Query 018496
Match_columns 355
No_of_seqs 215 out of 2044
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 16:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018496.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018496hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 16.5 46 0.0034 16.4 2.0 20 305-324 3-23 (27)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 15.9 39 0.0028 22.6 2.3 14 311-324 32-45 (91)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 15.4 2.4E+02 0.018 22.2 7.7 62 89-154 4-65 (248)
4 d1iwga8 f.35.1.1 (A:513-566,A: 14.1 1.7E+02 0.012 22.5 6.3 29 285-313 95-123 (222)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 7.3 1.9E+02 0.014 21.7 4.1 44 269-312 61-104 (199)
6 d1kqfb2 f.23.22.1 (B:246-290) 6.9 1.8E+02 0.013 16.5 2.7 27 293-319 6-32 (45)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 4.5 2.2E+02 0.016 18.6 2.5 11 315-325 48-58 (100)
8 d2glia4 g.37.1.1 (A:198-228) F 4.2 1.7E+02 0.012 15.1 1.1 18 335-352 4-21 (31)
9 d2iuba2 f.17.3.1 (A:286-349) M 3.8 2E+02 0.014 17.2 1.5 6 318-323 58-63 (64)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 2.3 6.4E+02 0.047 16.3 3.2 8 312-319 50-57 (107)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.55 E-value=46 Score=16.42 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=13.2
Q ss_pred hhhhH-hhhhHHhhhhhcccc
Q 018496 305 IGSII-VFGALYTRSFFKKVS 324 (355)
Q Consensus 305 iG~~l-v~~Gi~~~~~~k~k~ 324 (355)
+|..+ .++|+++..+.+.|.
T Consensus 3 lgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred eeehHHHHHHHHHHHHHHhcC
Confidence 45555 457888888776544
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=15.89 E-value=39 Score=22.59 Aligned_cols=14 Identities=7% Similarity=-0.228 Sum_probs=6.8
Q ss_pred hhhHHhhhhhcccc
Q 018496 311 FGALYTRSFFKKVS 324 (355)
Q Consensus 311 ~~Gi~~~~~~k~k~ 324 (355)
..|++.+...|.|+
T Consensus 32 V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 32 AILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHHTTTTTTTT
T ss_pred HHHHHHhhheeeec
Confidence 34555555545443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=15.37 E-value=2.4e+02 Score=22.16 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhcCchhHHHHHhhhchHHHHHHHHHHhccccCchhhHHHHHHHHhh
Q 018496 89 KYCLVSMSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMIWGTLIMQKRYKGYDYFLALLVTLGC 154 (355)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~sl~~ls~~~~~i~ks~~pi~v~i~~~l~~~~k~s~~~~ls~~li~~Gv 154 (355)
++++++++..+..+.....+..=++....+ ..+.+.++.++++.+|.-+.||+-=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 356677776666655555555555443332 22344556777888888888877544444443
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.12 E-value=1.7e+02 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCchhhhhhhhHhhhh
Q 018496 285 LVSIVLSCVWFRHPLSWEQCIGSIIVFGA 313 (355)
Q Consensus 285 v~siils~~~fge~~t~~~~iG~~lv~~G 313 (355)
+...+.+..+.|.+++....+|..+.++.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34556677788999999999998887653
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.34 E-value=1.9e+02 Score=21.65 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=28.3
Q ss_pred hhhChHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhHhhh
Q 018496 269 RTFGALTFATIMTTRQLVSIVLSCVWFRHPLSWEQCIGSIIVFG 312 (355)
Q Consensus 269 ~~~~~~~~si~~~~~~v~siils~~~fge~~t~~~~iG~~lv~~ 312 (355)
+..-+.....+...-.+........++|.+++.....+..+.++
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 33333444444444445555566677899999988888888765
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.85 E-value=1.8e+02 Score=16.50 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=16.8
Q ss_pred HHcCCCCchhhhhhhhHhhhhHHhhhh
Q 018496 293 VWFRHPLSWEQCIGSIIVFGALYTRSF 319 (355)
Q Consensus 293 ~~fge~~t~~~~iG~~lv~~Gi~~~~~ 319 (355)
-++....-+...+|+...+++.++-..
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 345666667777788777655444333
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.52 E-value=2.2e+02 Score=18.63 Aligned_cols=11 Identities=0% Similarity=-0.215 Sum_probs=4.5
Q ss_pred HhhhhhccccC
Q 018496 315 YTRSFFKKVSE 325 (355)
Q Consensus 315 ~~~~~~k~k~~ 325 (355)
.+..+++|+++
T Consensus 48 ~~~~~~~r~~~ 58 (100)
T d3dtub2 48 LYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHBTTT
T ss_pred HHHhhhhhccC
Confidence 34344444333
No 8
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.23 E-value=1.7e+02 Score=15.10 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=13.0
Q ss_pred cccccccccccccCCCCC
Q 018496 335 ENMHNGASSLMKGSSPRG 352 (355)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~ 352 (355)
.++..+-.+.++-+|||.
T Consensus 4 ~C~~~gC~KafsNsSDra 21 (31)
T d2glia4 4 MCEHEGCSKAFSNASDRA 21 (31)
T ss_dssp ECCSTTCCCEESSSSTTH
T ss_pred cccCCChhhhhcchhhhh
Confidence 355666777888888884
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.80 E-value=2e+02 Score=17.20 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=2.4
Q ss_pred hhhccc
Q 018496 318 SFFKKV 323 (355)
Q Consensus 318 ~~~k~k 323 (355)
.+.|+|
T Consensus 58 ~~f~rk 63 (64)
T d2iuba2 58 VYFKKK 63 (64)
T ss_dssp TTTTSC
T ss_pred HHHhcc
Confidence 344443
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.33 E-value=6.4e+02 Score=16.35 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=3.2
Q ss_pred hhHHhhhh
Q 018496 312 GALYTRSF 319 (355)
Q Consensus 312 ~Gi~~~~~ 319 (355)
.|+..+..
T Consensus 50 ~~~~~~~~ 57 (107)
T d3ehbb2 50 CLLLLICI 57 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444333
Done!