Query 018497
Match_columns 355
No_of_seqs 171 out of 1550
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 3.2E-32 6.9E-37 236.3 25.4 200 98-319 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.1E-15 2.4E-20 125.1 18.2 147 186-341 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 2.1E-15 4.7E-20 118.3 14.8 110 186-301 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 7.6E-13 1.6E-17 119.4 24.4 288 3-327 2-356 (373)
5 PHA02713 hypothetical protein; 99.5 9.4E-13 2E-17 128.0 22.2 238 71-330 275-546 (557)
6 KOG4441 Proteins containing BT 99.5 3.8E-12 8.3E-17 123.5 22.8 230 71-326 304-555 (571)
7 KOG4441 Proteins containing BT 99.4 7.4E-11 1.6E-15 114.6 20.1 188 115-325 301-507 (571)
8 PHA02713 hypothetical protein; 99.4 1.2E-10 2.5E-15 113.5 21.2 188 116-325 273-497 (557)
9 PHA03098 kelch-like protein; P 99.3 3.2E-10 7E-15 110.7 23.8 190 115-325 311-519 (534)
10 PHA02790 Kelch-like protein; P 99.3 2.3E-10 5E-15 109.7 22.3 188 101-324 270-477 (480)
11 PLN02153 epithiospecifier prot 99.2 3E-08 6.4E-13 91.3 25.1 214 98-326 28-293 (341)
12 TIGR03547 muta_rot_YjhT mutatr 99.1 2.3E-08 5E-13 92.2 23.0 216 98-325 13-306 (346)
13 PLN02193 nitrile-specifier pro 99.1 5.9E-08 1.3E-12 92.9 26.3 192 115-326 193-419 (470)
14 TIGR03548 mutarot_permut cycli 99.1 3E-08 6.6E-13 90.5 23.2 188 116-325 40-287 (323)
15 PRK14131 N-acetylneuraminic ac 99.0 1.1E-07 2.4E-12 88.6 23.8 216 98-325 34-328 (376)
16 PHA03098 kelch-like protein; P 99.0 1.4E-08 3.1E-13 99.1 17.5 188 116-325 265-472 (534)
17 PHA02790 Kelch-like protein; P 99.0 2.9E-08 6.2E-13 95.4 19.1 155 71-254 290-457 (480)
18 PF12937 F-box-like: F-box-lik 98.9 8.9E-10 1.9E-14 69.8 3.2 41 5-45 1-41 (47)
19 PLN02153 epithiospecifier prot 98.9 8.9E-07 1.9E-11 81.5 23.4 234 71-317 53-339 (341)
20 PRK14131 N-acetylneuraminic ac 98.8 6.9E-06 1.5E-10 76.6 27.0 156 158-323 194-374 (376)
21 PLN02193 nitrile-specifier pro 98.8 9.5E-07 2.1E-11 84.7 20.8 153 158-326 198-360 (470)
22 PF00646 F-box: F-box domain; 98.7 1.1E-08 2.4E-13 65.2 3.4 44 5-48 3-46 (48)
23 smart00256 FBOX A Receptor for 98.7 6E-09 1.3E-13 63.9 1.8 39 8-46 1-39 (41)
24 TIGR03547 muta_rot_YjhT mutatr 98.6 3E-05 6.5E-10 71.5 24.9 130 158-301 173-327 (346)
25 TIGR03548 mutarot_permut cycli 98.6 2.2E-06 4.9E-11 78.2 15.3 143 164-325 52-202 (323)
26 KOG4693 Uncharacterized conser 98.4 3.8E-06 8.3E-11 71.2 10.7 203 113-330 42-289 (392)
27 KOG1230 Protein containing rep 98.0 0.0003 6.5E-09 63.5 14.9 210 114-329 97-352 (521)
28 KOG2120 SCF ubiquitin ligase, 97.4 8.4E-05 1.8E-09 64.7 1.7 39 5-43 98-136 (419)
29 KOG0379 Kelch repeat-containin 97.3 0.028 6.2E-07 54.1 18.0 200 116-328 89-312 (482)
30 KOG0379 Kelch repeat-containin 97.2 0.013 2.7E-07 56.6 15.4 158 158-328 93-260 (482)
31 KOG1230 Protein containing rep 97.2 0.017 3.6E-07 52.7 14.4 152 158-318 103-276 (521)
32 KOG4693 Uncharacterized conser 97.2 0.011 2.5E-07 50.6 12.5 175 116-301 106-308 (392)
33 PF08450 SGL: SMP-30/Gluconola 97.1 0.16 3.5E-06 44.2 21.6 199 99-328 8-224 (246)
34 PF02191 OLF: Olfactomedin-lik 96.9 0.082 1.8E-06 46.1 15.7 127 186-327 74-213 (250)
35 smart00284 OLF Olfactomedin-li 96.9 0.044 9.4E-07 47.6 13.7 135 171-327 69-218 (255)
36 PF13964 Kelch_6: Kelch motif 96.8 0.004 8.6E-08 39.6 5.0 40 186-227 7-47 (50)
37 PF01344 Kelch_1: Kelch motif; 96.5 0.0096 2.1E-07 37.1 5.5 40 186-227 7-47 (47)
38 KOG2997 F-box protein FBX9 [Ge 96.3 0.0017 3.8E-08 56.8 1.7 44 6-49 108-156 (366)
39 KOG0274 Cdc4 and related F-box 96.2 1.1 2.5E-05 43.7 20.2 276 5-319 108-402 (537)
40 KOG0281 Beta-TrCP (transducin 96.1 0.0044 9.5E-08 54.9 2.7 41 6-46 76-120 (499)
41 COG4257 Vgb Streptogramin lyas 95.2 0.35 7.7E-06 42.1 11.0 119 92-230 189-317 (353)
42 COG3055 Uncharacterized protei 95.2 2.2 4.8E-05 38.6 16.2 129 158-301 201-355 (381)
43 PF07646 Kelch_2: Kelch motif; 95.2 0.066 1.4E-06 33.7 5.1 40 186-225 7-46 (49)
44 PF13964 Kelch_6: Kelch motif 95.0 0.095 2.1E-06 33.1 5.6 38 99-136 8-49 (50)
45 PF07893 DUF1668: Protein of u 95.0 1.1 2.5E-05 41.1 14.7 123 95-231 69-224 (342)
46 KOG3545 Olfactomedin and relat 94.8 2.4 5.2E-05 36.5 15.4 182 116-327 11-212 (249)
47 PF07762 DUF1618: Protein of u 94.2 0.43 9.2E-06 37.1 8.6 76 209-285 6-101 (131)
48 PF07893 DUF1668: Protein of u 93.4 3.3 7.1E-05 38.1 14.2 107 210-324 87-214 (342)
49 PRK11138 outer membrane biogen 93.4 6.9 0.00015 36.7 17.7 106 186-323 252-359 (394)
50 PRK11138 outer membrane biogen 93.3 7.3 0.00016 36.5 18.7 183 100-321 118-316 (394)
51 TIGR01640 F_box_assoc_1 F-box 93.0 3 6.4E-05 35.8 12.7 124 188-327 3-137 (230)
52 PF13418 Kelch_4: Galactose ox 92.8 0.25 5.4E-06 30.9 4.2 40 186-227 7-48 (49)
53 PF07250 Glyoxal_oxid_N: Glyox 92.5 2.9 6.3E-05 36.3 11.7 165 154-343 47-222 (243)
54 KOG0310 Conserved WD40 repeat- 91.9 4 8.7E-05 38.2 12.3 133 187-353 76-213 (487)
55 PF13360 PQQ_2: PQQ-like domai 91.8 7.4 0.00016 33.2 19.5 182 101-323 35-236 (238)
56 PF06433 Me-amine-dh_H: Methyl 91.1 2.7 5.8E-05 38.2 10.2 121 186-323 189-326 (342)
57 COG3055 Uncharacterized protei 91.1 0.72 1.6E-05 41.6 6.5 118 158-283 118-268 (381)
58 smart00612 Kelch Kelch domain. 91.1 0.69 1.5E-05 28.1 4.8 23 208-231 14-37 (47)
59 PF08450 SGL: SMP-30/Gluconola 89.8 12 0.00027 32.2 16.3 111 186-324 5-129 (246)
60 TIGR03300 assembly_YfgL outer 89.4 18 0.00039 33.5 20.4 181 101-321 104-301 (377)
61 PF01344 Kelch_1: Kelch motif; 89.1 3.5 7.6E-05 25.1 6.9 44 236-281 4-47 (47)
62 PF14583 Pectate_lyase22: Olig 88.5 21 0.00045 33.2 16.2 210 100-324 44-279 (386)
63 PF13360 PQQ_2: PQQ-like domai 88.2 15 0.00033 31.2 16.6 113 186-323 32-146 (238)
64 TIGR03300 assembly_YfgL outer 86.9 15 0.00032 34.1 12.7 106 186-322 61-168 (377)
65 KOG4152 Host cell transcriptio 86.8 28 0.00061 33.4 13.7 195 115-326 57-311 (830)
66 PLN02772 guanylate kinase 85.9 5.3 0.00011 37.2 8.7 74 186-267 30-107 (398)
67 PF13418 Kelch_4: Galactose ox 85.9 1.9 4E-05 26.8 4.2 31 293-324 10-44 (49)
68 PF07646 Kelch_2: Kelch motif; 85.3 2.1 4.4E-05 26.7 4.2 42 237-280 5-48 (49)
69 KOG0294 WD40 repeat-containing 85.2 28 0.0006 31.2 12.3 113 186-324 48-164 (362)
70 KOG4341 F-box protein containi 84.4 0.52 1.1E-05 43.6 1.5 38 5-42 72-109 (483)
71 COG4257 Vgb Streptogramin lyas 84.1 29 0.00064 30.6 17.2 121 186-327 195-315 (353)
72 KOG2437 Muskelin [Signal trans 83.7 4.4 9.5E-05 38.5 7.1 127 117-252 231-394 (723)
73 PF10282 Lactonase: Lactonase, 83.3 37 0.0008 31.2 14.3 118 190-326 154-286 (345)
74 KOG1963 WD40 repeat protein [G 83.0 58 0.0012 33.2 18.5 63 258-324 479-546 (792)
75 PRK11028 6-phosphogluconolacto 82.8 31 0.00066 31.3 12.5 96 209-318 12-111 (330)
76 PF05096 Glu_cyclase_2: Glutam 82.7 33 0.00071 30.2 14.9 110 186-324 95-210 (264)
77 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.3 23 0.0005 34.8 12.0 117 186-324 65-196 (527)
78 KOG0316 Conserved WD40 repeat- 82.2 32 0.00069 29.6 17.8 109 99-227 25-141 (307)
79 KOG2055 WD40 repeat protein [G 81.1 49 0.0011 31.2 12.6 101 209-325 280-382 (514)
80 COG3386 Gluconolactonase [Carb 80.7 38 0.00082 30.6 11.9 111 190-324 36-158 (307)
81 PF13415 Kelch_3: Galactose ox 80.3 4.1 8.9E-05 25.3 4.1 39 191-231 2-41 (49)
82 PF13415 Kelch_3: Galactose ox 80.2 6.7 0.00015 24.3 5.1 24 114-137 18-41 (49)
83 COG2706 3-carboxymuconate cycl 79.6 49 0.0011 30.1 15.7 110 208-327 166-286 (346)
84 smart00612 Kelch Kelch domain. 79.3 1.6 3.4E-05 26.4 2.0 19 116-134 16-34 (47)
85 cd01206 Homer Homer type EVH1 79.2 6.6 0.00014 29.1 5.3 37 115-157 11-48 (111)
86 PF12458 DUF3686: ATPase invol 79.1 26 0.00056 32.8 10.2 136 99-266 235-384 (448)
87 PTZ00420 coronin; Provisional 77.9 77 0.0017 31.5 16.1 120 189-324 177-300 (568)
88 COG1520 FOG: WD40-like repeat 75.5 58 0.0013 30.2 12.1 113 186-324 64-178 (370)
89 KOG0299 U3 snoRNP-associated p 75.3 75 0.0016 30.0 17.6 35 94-130 205-239 (479)
90 PRK11028 6-phosphogluconolacto 75.2 64 0.0014 29.2 19.5 116 190-324 90-214 (330)
91 COG4946 Uncharacterized protei 75.2 79 0.0017 30.2 13.0 162 40-224 262-438 (668)
92 PF05096 Glu_cyclase_2: Glutam 74.9 59 0.0013 28.6 13.1 113 189-327 54-168 (264)
93 PF10282 Lactonase: Lactonase, 74.6 70 0.0015 29.3 25.9 120 190-325 202-332 (345)
94 PLN02919 haloacid dehalogenase 74.6 1.3E+02 0.0028 32.5 23.4 112 190-321 750-892 (1057)
95 cd01207 Ena-Vasp Enabled-VASP- 72.4 16 0.00034 27.4 6.0 40 115-157 9-48 (111)
96 TIGR03074 PQQ_membr_DH membran 72.4 65 0.0014 33.2 12.2 29 186-223 190-220 (764)
97 PF03088 Str_synth: Strictosid 71.4 11 0.00023 27.1 4.7 34 290-324 3-52 (89)
98 PLN02919 haloacid dehalogenase 71.2 1.6E+02 0.0034 31.9 24.0 203 97-325 574-841 (1057)
99 KOG4152 Host cell transcriptio 70.9 99 0.0021 29.9 11.9 101 158-267 235-362 (830)
100 PF13570 PQQ_3: PQQ-like domai 67.9 8.5 0.00018 22.6 3.1 24 186-218 17-40 (40)
101 KOG0647 mRNA export protein (c 67.7 79 0.0017 28.3 10.0 75 244-329 40-114 (347)
102 KOG0266 WD40 repeat-containing 66.9 1.2E+02 0.0027 29.0 13.1 115 186-324 166-283 (456)
103 smart00564 PQQ beta-propeller 66.8 19 0.00042 19.7 4.4 26 294-323 5-30 (33)
104 KOG1274 WD40 repeat protein [G 66.3 1.7E+02 0.0036 30.4 17.4 76 186-277 103-179 (933)
105 TIGR03866 PQQ_ABC_repeats PQQ- 66.0 89 0.0019 27.1 22.5 113 189-323 124-243 (300)
106 PTZ00421 coronin; Provisional 65.9 1.4E+02 0.003 29.2 13.6 64 245-321 139-202 (493)
107 PF03088 Str_synth: Strictosid 65.0 19 0.0004 25.9 4.9 38 187-224 5-52 (89)
108 KOG2055 WD40 repeat protein [G 62.5 31 0.00067 32.5 6.9 71 245-326 226-297 (514)
109 TIGR02658 TTQ_MADH_Hv methylam 61.7 1.4E+02 0.0029 27.7 23.6 226 70-324 79-338 (352)
110 KOG2502 Tub family proteins [G 60.6 6.5 0.00014 35.5 2.2 39 3-41 43-89 (355)
111 PF07250 Glyoxal_oxid_N: Glyox 60.5 63 0.0014 28.1 8.2 85 211-301 48-134 (243)
112 KOG0289 mRNA splicing factor [ 58.9 1.6E+02 0.0035 27.8 12.2 115 188-326 356-471 (506)
113 PF01011 PQQ: PQQ enzyme repea 58.3 23 0.0005 20.5 3.7 24 297-324 2-25 (38)
114 TIGR03866 PQQ_ABC_repeats PQQ- 58.0 1.3E+02 0.0027 26.1 23.4 110 209-330 179-293 (300)
115 COG3490 Uncharacterized protei 56.6 1.5E+02 0.0032 26.6 11.1 134 186-327 119-271 (366)
116 PF08268 FBA_3: F-box associat 55.7 42 0.00091 25.7 5.9 54 292-345 2-60 (129)
117 PLN00181 protein SPA1-RELATED; 54.5 2.7E+02 0.0058 28.9 23.5 101 209-319 640-740 (793)
118 KOG0286 G-protein beta subunit 52.7 1.7E+02 0.0037 26.1 16.9 97 209-320 166-262 (343)
119 KOG0292 Vesicle coat complex C 51.8 74 0.0016 32.9 8.0 68 258-332 228-296 (1202)
120 PF13013 F-box-like_2: F-box-l 51.7 8.7 0.00019 28.8 1.3 29 5-33 22-50 (109)
121 KOG2096 WD40 repeat protein [G 51.4 36 0.00077 30.7 5.2 15 258-272 108-122 (420)
122 KOG0266 WD40 repeat-containing 50.6 2.4E+02 0.0051 27.1 12.3 98 208-322 224-323 (456)
123 KOG2096 WD40 repeat protein [G 49.9 2E+02 0.0044 26.1 11.7 36 289-327 192-227 (420)
124 KOG0301 Phospholipase A2-activ 49.5 2.9E+02 0.0063 27.8 12.4 86 209-315 200-286 (745)
125 PF09910 DUF2139: Uncharacteri 49.1 1.9E+02 0.0041 26.0 9.2 107 209-326 78-192 (339)
126 PF13088 BNR_2: BNR repeat-lik 49.0 1.8E+02 0.0039 25.3 14.9 132 152-300 131-275 (275)
127 PF14870 PSII_BNR: Photosynthe 47.2 2.2E+02 0.0047 25.7 19.9 171 124-326 5-183 (302)
128 KOG0291 WD40-repeat-containing 47.1 3.3E+02 0.0072 27.8 18.9 109 186-319 440-552 (893)
129 KOG1446 Histone H3 (Lys4) meth 46.9 2.2E+02 0.0047 25.6 19.3 30 290-322 238-267 (311)
130 PRK04792 tolB translocation pr 46.8 2.7E+02 0.0058 26.7 14.5 116 189-326 227-347 (448)
131 PF13854 Kelch_5: Kelch motif 46.2 62 0.0013 19.1 4.4 31 236-266 7-38 (42)
132 PF02897 Peptidase_S9_N: Proly 45.8 2.6E+02 0.0056 26.2 19.5 122 188-325 285-412 (414)
133 KOG0282 mRNA splicing factor [ 43.8 3E+02 0.0065 26.4 12.6 183 103-321 227-466 (503)
134 KOG0295 WD40 repeat-containing 43.6 2E+02 0.0043 26.5 8.7 69 243-324 303-371 (406)
135 KOG0321 WD40 repeat-containing 42.8 1.2E+02 0.0025 30.2 7.5 101 209-322 74-180 (720)
136 PF02191 OLF: Olfactomedin-lik 42.6 1.5E+02 0.0032 26.0 7.7 76 243-328 30-109 (250)
137 KOG0265 U5 snRNP-specific prot 41.6 1.7E+02 0.0036 26.3 7.7 67 243-321 58-124 (338)
138 PF00568 WH1: WH1 domain; Int 41.3 89 0.0019 23.3 5.5 45 115-166 16-64 (111)
139 KOG0639 Transducin-like enhanc 40.9 1.3E+02 0.0028 29.0 7.3 101 209-321 440-543 (705)
140 KOG0315 G-protein beta subunit 40.3 2.6E+02 0.0056 24.6 14.1 102 208-319 145-247 (311)
141 KOG0649 WD40 repeat protein [G 40.0 2.2E+02 0.0047 24.9 7.9 112 226-355 56-175 (325)
142 PRK04043 tolB translocation pr 39.2 3.4E+02 0.0075 25.7 12.2 102 209-326 213-318 (419)
143 KOG0319 WD40-repeat-containing 39.1 2.2E+02 0.0047 28.9 8.8 66 210-281 41-107 (775)
144 PF13859 BNR_3: BNR repeat-lik 38.9 3E+02 0.0065 25.0 9.7 81 186-276 126-211 (310)
145 TIGR03032 conserved hypothetic 37.0 1.3E+02 0.0029 27.2 6.6 53 186-253 208-261 (335)
146 KOG0271 Notchless-like WD40 re 36.8 3.6E+02 0.0078 25.2 12.2 35 113-147 177-211 (480)
147 KOG1310 WD40 repeat protein [G 36.4 1.9E+02 0.0041 28.3 7.7 106 100-218 59-179 (758)
148 PF03178 CPSF_A: CPSF A subuni 36.2 3.2E+02 0.007 24.5 15.8 104 209-329 62-171 (321)
149 PF02239 Cytochrom_D1: Cytochr 35.7 3.7E+02 0.0079 25.0 19.1 181 113-324 14-209 (369)
150 PRK04043 tolB translocation pr 35.0 4E+02 0.0087 25.3 21.1 182 114-326 212-409 (419)
151 KOG0300 WD40 repeat-containing 34.8 2.6E+02 0.0055 25.4 7.9 59 258-325 378-436 (481)
152 KOG1539 WD repeat protein [Gen 33.3 5.7E+02 0.012 26.5 11.6 120 186-323 455-612 (910)
153 KOG3545 Olfactomedin and relat 33.1 3.3E+02 0.0072 23.7 9.4 89 210-321 11-100 (249)
154 KOG2321 WD40 repeat protein [G 33.0 4.4E+02 0.0095 26.1 9.6 113 190-324 145-265 (703)
155 PRK00178 tolB translocation pr 32.4 4.3E+02 0.0093 24.8 12.8 115 190-324 210-326 (430)
156 KOG0772 Uncharacterized conser 31.8 2.2E+02 0.0047 27.7 7.3 79 241-328 373-457 (641)
157 PF15408 PH_7: Pleckstrin homo 31.3 20 0.00044 25.2 0.5 24 23-46 77-100 (104)
158 PF00400 WD40: WD domain, G-be 29.9 1.1E+02 0.0023 17.1 6.4 39 274-315 1-39 (39)
159 PF07569 Hira: TUP1-like enhan 29.8 3.3E+02 0.0071 23.2 7.8 80 236-325 14-103 (219)
160 PF01436 NHL: NHL repeat; Int 29.2 98 0.0021 16.4 3.3 12 290-301 7-18 (28)
161 COG0823 TolB Periplasmic compo 28.0 4.4E+02 0.0095 25.1 9.0 102 209-328 218-325 (425)
162 PF14157 YmzC: YmzC-like prote 27.6 1E+02 0.0022 20.4 3.2 16 310-325 42-57 (63)
163 PF13018 ESPR: Extended Signal 27.0 54 0.0012 17.1 1.5 16 118-133 7-22 (24)
164 PLN02772 guanylate kinase 26.8 3.9E+02 0.0085 25.2 8.1 81 237-322 28-113 (398)
165 PTZ00334 trans-sialidase; Prov 26.3 7.4E+02 0.016 25.8 10.5 81 186-276 265-348 (780)
166 KOG2445 Nuclear pore complex c 25.9 5E+02 0.011 23.5 8.6 44 235-281 116-159 (361)
167 cd00837 EVH1 EVH1 (Enabled, Va 25.3 2.8E+02 0.006 20.3 5.9 43 115-163 9-52 (104)
168 KOG0647 mRNA export protein (c 25.1 5.2E+02 0.011 23.4 9.8 64 209-284 94-157 (347)
169 PF07433 DUF1513: Protein of u 25.1 5.2E+02 0.011 23.4 20.0 200 105-324 20-254 (305)
170 PF15232 DUF4585: Domain of un 24.9 1.3E+02 0.0029 20.6 3.5 12 158-169 34-45 (75)
171 PRK04792 tolB translocation pr 24.9 6.1E+02 0.013 24.2 21.8 180 113-325 240-433 (448)
172 KOG1063 RNA polymerase II elon 24.8 7.4E+02 0.016 25.1 12.0 65 209-277 169-235 (764)
173 KOG0639 Transducin-like enhanc 24.7 3E+02 0.0065 26.7 6.9 52 209-267 487-540 (705)
174 smart00135 LY Low-density lipo 24.0 1.3E+02 0.0028 17.1 3.2 23 188-218 18-40 (43)
175 PF02239 Cytochrom_D1: Cytochr 23.9 5.9E+02 0.013 23.6 12.7 100 209-326 16-118 (369)
176 KOG3926 F-box proteins [Amino 23.8 65 0.0014 28.3 2.3 36 6-41 203-239 (332)
177 cd00216 PQQ_DH Dehydrogenases 23.5 3E+02 0.0064 26.7 7.2 73 240-323 58-134 (488)
178 COG2706 3-carboxymuconate cycl 23.4 5.9E+02 0.013 23.4 25.9 110 209-326 213-332 (346)
179 COG4946 Uncharacterized protei 22.6 7.1E+02 0.015 24.1 15.4 142 158-326 292-440 (668)
180 PF07370 DUF1489: Protein of u 22.5 57 0.0012 25.4 1.6 28 186-217 43-70 (137)
181 smart00284 OLF Olfactomedin-li 22.2 5.4E+02 0.012 22.6 8.0 48 272-324 62-109 (255)
182 KOG4499 Ca2+-binding protein R 22.1 4.2E+02 0.009 23.2 6.7 46 186-245 218-264 (310)
183 KOG0306 WD40-repeat-containing 21.8 8.9E+02 0.019 25.0 9.9 106 190-320 33-140 (888)
184 PTZ00420 coronin; Provisional 21.6 8.1E+02 0.018 24.4 13.6 55 258-322 148-202 (568)
185 PF06058 DCP1: Dcp1-like decap 21.6 1.3E+02 0.0029 22.9 3.5 20 310-329 30-49 (122)
186 cd00200 WD40 WD40 domain, foun 21.3 4.7E+02 0.01 21.6 14.3 95 209-321 31-127 (289)
187 KOG0271 Notchless-like WD40 re 21.2 2.6E+02 0.0056 26.1 5.6 55 258-321 137-191 (480)
188 PF14339 DUF4394: Domain of un 21.1 3.3E+02 0.0071 23.6 6.0 51 101-157 37-91 (236)
189 KOG2437 Muskelin [Signal trans 21.1 1.7E+02 0.0037 28.3 4.6 132 186-324 266-419 (723)
190 KOG4378 Nuclear protein COP1 [ 21.0 2.7E+02 0.0059 26.9 5.9 99 209-322 143-244 (673)
191 PF11932 DUF3450: Protein of u 20.9 66 0.0014 28.1 1.9 20 113-132 200-219 (251)
192 KOG0283 WD40 repeat-containing 20.6 3.9E+02 0.0084 27.3 7.2 56 258-323 432-487 (712)
193 PF12768 Rax2: Cortical protei 20.4 2.2E+02 0.0048 25.4 5.1 57 158-225 21-80 (281)
194 PF00958 GMP_synt_C: GMP synth 20.1 37 0.00079 24.6 0.1 21 1-21 50-70 (93)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=3.2e-32 Score=236.30 Aligned_cols=200 Identities=29% Similarity=0.557 Sum_probs=154.1
Q ss_pred EeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC---Cc--eeEEEEecCCCCCCcEEEE---------------
Q 018497 98 VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---PR--YLGFGVNSVSGHLDDFKVV--------------- 157 (355)
Q Consensus 98 ~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~---~~--~~~~g~d~~~~~~~~ykvv--------------- 157 (355)
+++||||||+.. ...++||||+||+++.||+++.. .. .++||||+. +++||||
T Consensus 1 ~~sCnGLlc~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~---~~~YKVv~~~~~~~~~~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSY----GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPI---EKQYKVLCFSDRSGNRNQSEHQ 73 (230)
T ss_pred CcccceEEEEec----CCcEEEECCCCCCEEecCCCCCcccccccceEEEeeccc---CCcEEEEEEEeecCCCCCccEE
Confidence 479999999886 26899999999999999987652 11 289999998 9999999
Q ss_pred -EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCC-C
Q 018497 158 -YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTD-D 234 (355)
Q Consensus 158 -yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~-~ 234 (355)
|++++++||.+. ..+.... .... +|++||.+||++... . ......|++||+++|+|+ .+++| ..... .
T Consensus 74 Vys~~~~~Wr~~~-~~~~~~~-~~~~---~v~~~G~lyw~~~~~--~-~~~~~~IvsFDl~~E~f~~~i~~P-~~~~~~~ 144 (230)
T TIGR01640 74 VYTLGSNSWRTIE-CSPPHHP-LKSR---GVCINGVLYYLAYTL--K-TNPDYFIVSFDVSSERFKEFIPLP-CGNSDSV 144 (230)
T ss_pred EEEeCCCCccccc-cCCCCcc-ccCC---eEEECCEEEEEEEEC--C-CCCcEEEEEEEcccceEeeeeecC-ccccccc
Confidence 999999999988 3332221 1222 899999999998764 0 112238999999999999 58999 55432 2
Q ss_pred CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCcEEEEEEeeCC--
Q 018497 235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGKIFIRGECRHG-- 307 (355)
Q Consensus 235 ~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~-- 307 (355)
....|++++|+|+++...... .+++||+|+++++ .+|+++++|+.... ...|.++..+|+|++. . ..
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~--~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~--~-~~~~ 218 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDT--NNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLC--C-EDEN 218 (230)
T ss_pred cceEEEEECCEEEEEEecCCC--CcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEE--e-CCCC
Confidence 356899999999999886431 4699999998875 45999999986332 2347888999999998 5 32
Q ss_pred ceEEEEEeCCCC
Q 018497 308 GYGLLVYNPHSD 319 (355)
Q Consensus 308 ~~~l~~yd~~t~ 319 (355)
+..++.||++++
T Consensus 219 ~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 PFYIFYYNVGEN 230 (230)
T ss_pred ceEEEEEeccCC
Confidence 324999999986
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.71 E-value=1.1e-15 Score=125.11 Aligned_cols=147 Identities=31% Similarity=0.513 Sum_probs=103.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCC-CCCceEEEEE-CCeEEEEEecCCCCccEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLST-DDADKYLNVF-DGYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~-~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~i 262 (355)
+|++||.+||++... .......|++||+.+|+| ..+++| .... ......|++. +|+||++..... ...++|
T Consensus 1 gV~vnG~~hW~~~~~---~~~~~~~IlsFDl~~E~F~~~~~lP-~~~~~~~~~~~L~~v~~~~L~~~~~~~~--~~~~~I 74 (164)
T PF07734_consen 1 GVFVNGALHWLAYDE---NNDEKDFILSFDLSTEKFGRSLPLP-FCNDDDDDSVSLSVVRGDCLCVLYQCDE--TSKIEI 74 (164)
T ss_pred CEEECCEEEeeEEec---CCCCceEEEEEeccccccCCEECCC-CccCccCCEEEEEEecCCEEEEEEeccC--CccEEE
Confidence 689999999999886 111222899999999999 888999 5554 3355677555 679999976443 146999
Q ss_pred EEeccCC-CCCCeEEEEEecCCCc---e----eEeEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCCCeEEEEEEecC
Q 018497 263 WVMKEYG-LTESWTKLYTIEKPQR---I----WWPLGFTERGKIFIRGECRHGG-----YGLLVYNPHSDTFKCIGVHLP 329 (355)
Q Consensus 263 W~l~~~~-~~~~W~~~~~i~~~~~---~----~~~~~~~~~g~i~~~~~~~~~~-----~~l~~yd~~t~~~~~v~~~~~ 329 (355)
|+|++++ ++.+|+|..+|+.... . ...+.+..++++++. ..... ..++.|+ +.+..+++.+...
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~--~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~ 151 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVC--CDKETQREEKNKIYIVG-EDGKFIEVDIEDK 151 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEE--EcCCCCccceeEEEEEc-CCCEEEEcccccC
Confidence 9999765 3789999999986654 1 122333444567776 31111 3578888 7788888887432
Q ss_pred -cceeEEeeeecc
Q 018497 330 -YYAIQVLNFVES 341 (355)
Q Consensus 330 -~~~~~~~~y~~S 341 (355)
..+..++.|+||
T Consensus 152 ~~~~~~~~~YvpS 164 (164)
T PF07734_consen 152 SSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCEEEECCC
Confidence 345678899997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=2.1e-15 Score=118.31 Aligned_cols=110 Identities=25% Similarity=0.485 Sum_probs=86.2
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
|+++||.+||++... ......|++||+++|+|+.|++| ... .......|++++|+|+++..........++||+
T Consensus 1 gicinGvly~~a~~~----~~~~~~IvsFDv~~E~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 1 GICINGVLYWLAWSE----DSDNNVIVSFDVRSEKFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred CEEECcEEEeEEEEC----CCCCcEEEEEEcCCceEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 689999999999873 45678999999999999999998 332 233678999999999999887652234699999
Q ss_pred eccCCCCCCeEEEEEecCCC-c------eeEeEEEeeCCcEEEE
Q 018497 265 MKEYGLTESWTKLYTIEKPQ-R------IWWPLGFTERGKIFIR 301 (355)
Q Consensus 265 l~~~~~~~~W~~~~~i~~~~-~------~~~~~~~~~~g~i~~~ 301 (355)
|+|++ +++|++.+.+-... . ...+.+++++|+|++.
T Consensus 76 LeD~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 76 LEDYE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred eeccc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 99986 47899886643221 1 4677888888888887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.59 E-value=7.6e-13 Score=119.36 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=156.7
Q ss_pred CCCCCCCHHHHHHHHhcCC-cccchhhcccchhhHhhhCChHHHHHHHhcCCCCCCcEEEeec-CCCCceeeeccCCccc
Q 018497 3 CSSFRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTSKTFVEIHLNQSMRNPRPLLFRHG-ISPSYLGFYSTKCKEF 80 (355)
Q Consensus 3 ~~~~~LP~dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (355)
..+++||+||+..|..||| ..+++|||+|||+||+.+.... + ....++.|+ +++... +... +-+++. ..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~-~~~~~~~~~~~---~~~~~~-~~ 72 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPL-ILFNPINPSET---LTDDRS-YI 72 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccc-cccCcccCCCC---cccccc-cc
Confidence 4688999999999999997 5899999999999999876411 0 000111122 111110 0000 000000 00
Q ss_pred ccCCCCCCCCCCCCeEE---EeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCC-ce--------eEE-EEecC
Q 018497 81 EDLCDPPFRTQLADLDV---VGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RY--------LGF-GVNSV 147 (355)
Q Consensus 81 ~~~~~p~~~~~~~~~~~---~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~--------~~~-g~d~~ 147 (355)
......+.. ...+.+ .++..|+|.-.......+.+.+.||+++....+|+-.... .+ +.+ +.+..
T Consensus 73 ~~~~~~ls~--~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~ 150 (373)
T PLN03215 73 SRPGAFLSR--AAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR 150 (373)
T ss_pred ccccceeee--eEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence 000000000 000111 1345788877653224578899999999987777532221 00 212 11101
Q ss_pred ---------------C-CCCCcEEEE---------EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeecc
Q 018497 148 ---------------S-GHLDDFKVV---------YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCY 202 (355)
Q Consensus 148 ---------------~-~~~~~ykvv---------yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~ 202 (355)
+ +...+|-|+ | -..++|..++ ...... .. .++.+|++|.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~-w~~~~Wt~l~-~~~~~~---~D----Ii~~kGkfYAvD~~G-- 219 (373)
T PLN03215 151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINY-WDGNVLKALK-QMGYHF---SD----IIVHKGQTYALDSIG-- 219 (373)
T ss_pred cccccceeEEEEEEeecCCCcceEEEEEeecCcEee-ecCCeeeEcc-CCCcee---eE----EEEECCEEEEEcCCC--
Confidence 0 001122233 2 2257888887 422221 22 899999999996654
Q ss_pred CCCCCCcEEEEEEcCCceeeEecCCCC-CCCC---CCceEEEEECCeEEEEEecCCC-------------CccEEEEEEe
Q 018497 203 HDNSCPWLIVSFDFAKEIFQTVMMPYD-LSTD---DADKYLNVFDGYLCVFATIPNN-------------TFRSYELWVM 265 (355)
Q Consensus 203 ~~~~~~~~Il~fD~~~~~~~~i~lP~~-~~~~---~~~~~L~~~~G~L~~v~~~~~~-------------~~~~l~iW~l 265 (355)
.+.++|..- +.+.+..++. ...+ .....|+++.|+|++|...... ....++|+++
T Consensus 220 -------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 220 -------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred -------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 677777432 2223211101 1111 1346899999999999874211 1246889998
Q ss_pred ccCCCCCCeEEEEEecCCCcee---EeEEEe-------eCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497 266 KEYGLTESWTKLYTIEKPQRIW---WPLGFT-------ERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 327 (355)
Q Consensus 266 ~~~~~~~~W~~~~~i~~~~~~~---~~~~~~-------~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~ 327 (355)
+.. ..+|+++..++...++. ....+. ..+-|||. . +. ...+||++.++...+...
T Consensus 292 D~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt--d--d~-~~~v~~~~dg~~~~~~~~ 356 (373)
T PLN03215 292 DDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT--E--DT-MPKVFKLDNGNGSSIETT 356 (373)
T ss_pred cCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE--C--CC-cceEEECCCCCccceEee
Confidence 753 46899999887554411 111111 12368888 4 54 378999999998777554
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.55 E-value=9.4e-13 Score=128.02 Aligned_cols=238 Identities=12% Similarity=0.092 Sum_probs=150.6
Q ss_pred eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCC----CCceEEEEcCCcccEEecCCCCCCCce-------
Q 018497 71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRY------- 139 (355)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~------- 139 (355)
..|++....|..++....+ . ...-++..+|-|.+.++.. ....+..+||.+++|..+|+++..+..
T Consensus 275 ~~yd~~~~~W~~l~~mp~~--r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNH--I-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred EEEeCCCCeEEECCCCCcc--c-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 4577777777766522111 1 1223455677766555311 134678999999999999998866432
Q ss_pred ---eEEEEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccC-----------
Q 018497 140 ---LGFGVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYH----------- 203 (355)
Q Consensus 140 ---~~~g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~----------- 203 (355)
+.+|-... ....+-+ ||.++++|+.++ .+|....... .+.++|++|.+++.....
T Consensus 352 g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~-----~~~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 352 DTIYAIGGQNG---TNVERTIECYTMGDDKWKMLP-DMPIALSSYG-----MCVLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred CEEEEECCcCC---CCCCceEEEEECCCCeEEECC-CCCccccccc-----EEEECCEEEEEeCCCcccccccccccccc
Confidence 33332111 1111223 999999999999 7776654332 788999999998753100
Q ss_pred ----CCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCC-CCeEEE
Q 018497 204 ----DNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLT-ESWTKL 277 (355)
Q Consensus 204 ----~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~-~~W~~~ 277 (355)
+......+.+||+.+++|+.+ ++| ..+ ....+++.+|+||++++..+.....-.+...+. .+ .+|+.+
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~~~~~W~~~ 496 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGT---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--NTYNGWELI 496 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCC-ccc---ccCcEEEECCEEEEEeCCCCCCccceeEEEecC--CCCCCeeEc
Confidence 000135799999999999988 666 444 345688999999999876431101111223322 23 479998
Q ss_pred EEecCCCceeEeEEEeeCCcEEEEEEeeCCc-eEEEEEeCCCCeEEEEEEecCc
Q 018497 278 YTIEKPQRIWWPLGFTERGKIFIRGECRHGG-YGLLVYNPHSDTFKCIGVHLPY 330 (355)
Q Consensus 278 ~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~l~~yd~~t~~~~~v~~~~~~ 330 (355)
..++.... ..-.+.-+|+||+. ++.++ ..+-.||++|++|..+.-+...
T Consensus 497 ~~m~~~r~--~~~~~~~~~~iyv~--Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 497 TTTESRLS--ALHTILHDNTIMML--HCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cccCcccc--cceeEEECCEEEEE--eeecceeehhhcCcccccccchhhhcCC
Confidence 88876542 22223346799999 42333 2588999999999999766543
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.51 E-value=3.8e-12 Score=123.47 Aligned_cols=230 Identities=16% Similarity=0.192 Sum_probs=154.8
Q ss_pred eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCC----CCceEEEEcCCcccEEecCCCCCCCce-------
Q 018497 71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGS----DRSLIYLWNPLIKKYMTLPRPSLNPRY------- 139 (355)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~------- 139 (355)
..|++..+.|..+.....+ ....-++..+|.|...++.. .......+||.+++|..+|++...+..
T Consensus 304 e~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred EEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 3677777777665533222 12344667778777665422 235789999999999999999888643
Q ss_pred ---eEE-EEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEE
Q 018497 140 ---LGF-GVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVS 213 (355)
Q Consensus 140 ---~~~-g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~ 213 (355)
+++ |+|. .+.++-+ ||.++++|..++ .++....... ++.++|.+|.+++.. ........+.+
T Consensus 381 g~iYavGG~dg----~~~l~svE~YDp~~~~W~~va-~m~~~r~~~g-----v~~~~g~iYi~GG~~--~~~~~l~sve~ 448 (571)
T KOG4441|consen 381 GKLYAVGGFDG----EKSLNSVECYDPVTNKWTPVA-PMLTRRSGHG-----VAVLGGKLYIIGGGD--GSSNCLNSVEC 448 (571)
T ss_pred CEEEEEecccc----ccccccEEEecCCCCcccccC-CCCcceeeeE-----EEEECCEEEEEcCcC--CCccccceEEE
Confidence 222 2332 2233333 999999999999 7776443332 789999999999865 11124578999
Q ss_pred EEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEE
Q 018497 214 FDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGF 292 (355)
Q Consensus 214 fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 292 (355)
||+.+++|+.+ +++ ..+ ....+++.+|+||++++.++. ...-.|=..+ .....|+.+..+.... ...-.+
T Consensus 449 YDP~t~~W~~~~~M~-~~R---~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~yd--p~~~~W~~v~~m~~~r--s~~g~~ 519 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMN-TRR---SGFGVAVLNGKIYVVGGFDGT-SALSSVERYD--PETNQWTMVAPMTSPR--SAVGVV 519 (571)
T ss_pred EcCCCCceeecCCcc-ccc---ccceEEEECCEEEEECCccCC-CccceEEEEc--CCCCceeEcccCcccc--ccccEE
Confidence 99999999998 777 555 456699999999999998751 1111122222 2357899996666554 222223
Q ss_pred eeCCcEEEEEEeeCCce----EEEEEeCCCCeEEEEEE
Q 018497 293 TERGKIFIRGECRHGGY----GLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 293 ~~~g~i~~~~~~~~~~~----~l~~yd~~t~~~~~v~~ 326 (355)
..++++|++ .+.++. .+-.||+++++|+...-
T Consensus 520 ~~~~~ly~v--GG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 520 VLGGKLYAV--GGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EECCEEEEE--ecccCccccceeEEcCCCCCceeeCCC
Confidence 446789998 433332 79999999999998743
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.36 E-value=7.4e-11 Score=114.59 Aligned_cols=188 Identities=17% Similarity=0.254 Sum_probs=134.0
Q ss_pred ceEEEEcCCcccEEecCCCCCCCce----------eEE-EEecCCCCCCcEEEE--EEcCCCceeEeccCCCceeeeccc
Q 018497 115 SLIYLWNPLIKKYMTLPRPSLNPRY----------LGF-GVNSVSGHLDDFKVV--YSLRSNSWKNIAYGFPRSIEINRS 181 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~-g~d~~~~~~~~ykvv--yss~t~~W~~~~~~~p~~~~~~~~ 181 (355)
..+..+||.+++|..+.+++..+.. +.. |+|.. ....+-+ ||+.+++|..++ .|+.......
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~---~~~l~~ve~YD~~~~~W~~~a-~M~~~R~~~~- 375 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSG---SDRLSSVERYDPRTNQWTPVA-PMNTKRSDFG- 375 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCC---CcccceEEEecCCCCceeccC-CccCccccce-
Confidence 4566889999999999999876532 222 23411 1122222 999999999988 7776655443
Q ss_pred cccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEE
Q 018497 182 HINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSY 260 (355)
Q Consensus 182 ~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l 260 (355)
.+.++|.+|.+++.. +......+..||+.+++|+.+ +++ ..+ .....++.+|+||++++.++. .-
T Consensus 376 ----v~~l~g~iYavGG~d---g~~~l~svE~YDp~~~~W~~va~m~-~~r---~~~gv~~~~g~iYi~GG~~~~---~~ 441 (571)
T KOG4441|consen 376 ----VAVLDGKLYAVGGFD---GEKSLNSVECYDPVTNKWTPVAPML-TRR---SGHGVAVLGGKLYIIGGGDGS---SN 441 (571)
T ss_pred ----eEEECCEEEEEeccc---cccccccEEEecCCCCcccccCCCC-cce---eeeEEEEECCEEEEEcCcCCC---cc
Confidence 789999999999876 345566899999999999998 677 543 567889999999999997662 11
Q ss_pred EEEEeccC-CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc----eEEEEEeCCCCeEEEEE
Q 018497 261 ELWVMKEY-GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG----YGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 261 ~iW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~----~~l~~yd~~t~~~~~v~ 325 (355)
.+=..+-| .....|+.+..|..... ...++ .-+|.||++ .+.++ ..+-.||+++++|..+.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a-~~~~~iYvv--GG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRS-GFGVA-VLNGKIYVV--GGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccc-cceEE-EECCEEEEE--CCccCCCccceEEEEcCCCCceeEcc
Confidence 22233333 23578999999887763 22233 346789999 42222 26889999999999995
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.35 E-value=1.2e-10 Score=113.53 Aligned_cols=188 Identities=11% Similarity=0.151 Sum_probs=124.2
Q ss_pred eEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEE-EE-EEcCCCceeEeccCCCceeeecccc
Q 018497 116 LIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFK-VV-YSLRSNSWKNIAYGFPRSIEINRSH 182 (355)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~yk-vv-yss~t~~W~~~~~~~p~~~~~~~~~ 182 (355)
.+..+||.+++|..+++++..+.. +.+| ++.. ....+ |. ||..++.|..++ .+|.......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~---~~~~~~v~~Yd~~~n~W~~~~-~m~~~R~~~~-- 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFN---NPSLNKVYKINIENKIHVELP-PMIKNRCRFS-- 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCC---CCccceEEEEECCCCeEeeCC-CCcchhhcee--
Confidence 467889999999999988766422 2222 2211 11112 22 999999999998 7776543322
Q ss_pred ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCc----
Q 018497 183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF---- 257 (355)
Q Consensus 183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~---- 257 (355)
.+.++|++|.+++.. +......+.+||+.+++|+.+ ++| ..+ .....++++|+|+++++..+...
T Consensus 347 ---~~~~~g~IYviGG~~---~~~~~~sve~Ydp~~~~W~~~~~mp-~~r---~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 347 ---LAVIDDTIYAIGGQN---GTNVERTIECYTMGDDKWKMLPDMP-IAL---SSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ---EEEECCEEEEECCcC---CCCCCceEEEEECCCCeEEECCCCC-ccc---ccccEEEECCEEEEEeCCCcccccccc
Confidence 789999999998864 122345799999999999998 777 544 34567789999999987643100
Q ss_pred -------------cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCC-
Q 018497 258 -------------RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG-----YGLLVYNPHS- 318 (355)
Q Consensus 258 -------------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~l~~yd~~t- 318 (355)
..-.+...+- ....|+.+..++... ..+-++..+|+||+. ++.++ ..+..||+++
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r--~~~~~~~~~~~IYv~--GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGT--IRPGVVSHKDDIYVV--CDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccceEEEECC--CCCeEeecCCCCccc--ccCcEEEECCEEEEE--eCCCCCCccceeEEEecCCCC
Confidence 0112333332 346899887776554 223334456899999 42211 2467999999
Q ss_pred CeEEEEE
Q 018497 319 DTFKCIG 325 (355)
Q Consensus 319 ~~~~~v~ 325 (355)
++|+.+.
T Consensus 491 ~~W~~~~ 497 (557)
T PHA02713 491 NGWELIT 497 (557)
T ss_pred CCeeEcc
Confidence 8999874
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.34 E-value=3.2e-10 Score=110.67 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=123.4
Q ss_pred ceEEEEcCCcccEEecCCCCCCCce----------eEEEEecCCCCCCcEE-EE-EEcCCCceeEeccCCCceeeecccc
Q 018497 115 SLIYLWNPLIKKYMTLPRPSLNPRY----------LGFGVNSVSGHLDDFK-VV-YSLRSNSWKNIAYGFPRSIEINRSH 182 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g~d~~~~~~~~yk-vv-yss~t~~W~~~~~~~p~~~~~~~~~ 182 (355)
..++.+||.|++|..+|+++..+.. +.+|=... ..... +. |+..+++|+..+ .+|.......
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~-~lp~~r~~~~-- 384 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYN---SISLNTVESWKPGESKWREEP-PLIFPRYNPC-- 384 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCC---CEecceEEEEcCCCCceeeCC-CcCcCCccce--
Confidence 3688999999999999988755422 22221111 11111 11 999999999988 6775443221
Q ss_pred ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCc--cE
Q 018497 183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTF--RS 259 (355)
Q Consensus 183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~--~~ 259 (355)
++.++|.+|.+++.. .+......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++...... ..
T Consensus 385 ---~~~~~~~iYv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~ 455 (534)
T PHA03098 385 ---VVNVNNLIYVIGGIS--KNDELLKTVECFSLNTNKWSKGSPLP-ISH---YGGCAIYHDGKIYVIGGISYIDNIKVY 455 (534)
T ss_pred ---EEEECCEEEEECCcC--CCCcccceEEEEeCCCCeeeecCCCC-ccc---cCceEEEECCEEEEECCccCCCCCccc
Confidence 778999999998743 1122346799999999999988 666 444 23456788999999987543110 01
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEE
Q 018497 260 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 260 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~ 325 (355)
-.+|..+. .+..|+.+..++.+. .....+..+|+||+. .+.. ...+..||+++++|+.+.
T Consensus 456 ~~v~~yd~--~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 456 NIVESYNP--VTNKWTELSSLNFPR--INASLCIFNNKIYVV--GGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ceEEEecC--CCCceeeCCCCCccc--ccceEEEECCEEEEE--cCCcCCcccceeEEEeCCCCEEEecC
Confidence 22566654 246899876655443 112223346789888 3221 126999999999998874
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.34 E-value=2.3e-10 Score=109.70 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=124.4
Q ss_pred eCceEEEeecC---CCCceEEEEcCCcccEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEE-EEcCCCce
Q 018497 101 CNGVLCFCSNG---SDRSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVV-YSLRSNSW 165 (355)
Q Consensus 101 ~~GLl~l~~~~---~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvv-yss~t~~W 165 (355)
.++.|.+.++. ........+||.+++|..+|+++..+.. +.+| .+. ... +- |+..+++|
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~s--ve~ydp~~n~W 343 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTS--VERWFHGDAAW 343 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCc--eEEEECCCCeE
Confidence 45555554431 1224567889999999999998766532 2222 111 111 12 99999999
Q ss_pred eEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECC
Q 018497 166 KNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG 244 (355)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G 244 (355)
..++ .+|....... ++.++|.+|.+++.. .....+.+||+.+++|+.+ ++| ..+ .....++.+|
T Consensus 344 ~~~~-~l~~~r~~~~-----~~~~~g~IYviGG~~-----~~~~~ve~ydp~~~~W~~~~~m~-~~r---~~~~~~~~~~ 408 (480)
T PHA02790 344 VNMP-SLLKPRCNPA-----VASINNVIYVIGGHS-----ETDTTTEYLLPNHDQWQFGPSTY-YPH---YKSCALVFGR 408 (480)
T ss_pred EECC-CCCCCCcccE-----EEEECCEEEEecCcC-----CCCccEEEEeCCCCEEEeCCCCC-Ccc---ccceEEEECC
Confidence 9998 7776554322 789999999998754 1225688999999999998 555 433 3456778999
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC--c--eEEEEEeCCCCe
Q 018497 245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG--G--YGLLVYNPHSDT 320 (355)
Q Consensus 245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~--~--~~l~~yd~~t~~ 320 (355)
+|+++++. .+++-. ....|+....++.+. ...-++.-+|+||+. ++.+ . ..+..||+++++
T Consensus 409 ~IYv~GG~-------~e~ydp----~~~~W~~~~~m~~~r--~~~~~~v~~~~IYvi--GG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 409 RLFLVGRN-------AEFYCE----SSNTWTLIDDPIYPR--DNPELIIVDNKLLLI--GGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEEECCc-------eEEecC----CCCcEeEcCCCCCCc--cccEEEEECCEEEEE--CCcCCCcccceEEEEECCCCe
Confidence 99999842 223322 246899887776543 222333457799999 4221 1 268999999999
Q ss_pred EEEE
Q 018497 321 FKCI 324 (355)
Q Consensus 321 ~~~v 324 (355)
|...
T Consensus 474 W~~~ 477 (480)
T PHA02790 474 WNIW 477 (480)
T ss_pred EEec
Confidence 9753
No 11
>PLN02153 epithiospecifier protein
Probab=99.16 E-value=3e-08 Score=91.26 Aligned_cols=214 Identities=12% Similarity=0.088 Sum_probs=122.5
Q ss_pred EeeeCceEEEeecCC-----CCceEEEEcCCcccEEecCCCCCC-C----ce---------eEEE-EecCCCCCCcEEEE
Q 018497 98 VGSCNGVLCFCSNGS-----DRSLIYLWNPLIKKYMTLPRPSLN-P----RY---------LGFG-VNSVSGHLDDFKVV 157 (355)
Q Consensus 98 ~~s~~GLl~l~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~-~----~~---------~~~g-~d~~~~~~~~ykvv 157 (355)
++..++.|.+..+.. ....++++||.+++|..+|+.... + .. +.|| ++.. ..+.-+
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~----~~~~~v 103 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK----REFSDF 103 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC----CccCcE
Confidence 344566665554311 124689999999999998865321 1 11 2232 2211 112212
Q ss_pred --EEcCCCceeEeccCC-----CceeeeccccccceeEeCceEEEEEeeecc-C-C-CCCCcEEEEEEcCCceeeEecCC
Q 018497 158 --YSLRSNSWKNIAYGF-----PRSIEINRSHINSSVFLNGSVHWCARFSCY-H-D-NSCPWLIVSFDFAKEIFQTVMMP 227 (355)
Q Consensus 158 --yss~t~~W~~~~~~~-----p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-~-~-~~~~~~Il~fD~~~~~~~~i~lP 227 (355)
||.++++|+.++ .+ |...... . .+..+|++|.+++.... . . ......+.+||+.+++|+.++.+
T Consensus 104 ~~yd~~t~~W~~~~-~~~~~~~p~~R~~~-~----~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 104 YSYDTVKNEWTFLT-KLDEEGGPEARTFH-S----MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred EEEECCCCEEEEec-cCCCCCCCCCceee-E----EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 999999999887 54 3322222 1 67899999999875410 0 0 01124689999999999987432
Q ss_pred CCC-CCCCCceEEEEECCeEEEEEecCCC------C-ccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcE
Q 018497 228 YDL-STDDADKYLNVFDGYLCVFATIPNN------T-FRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKI 298 (355)
Q Consensus 228 ~~~-~~~~~~~~L~~~~G~L~~v~~~~~~------~-~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i 298 (355)
.. ........++..+|+|++++..... . ...-.++.++- ...+|+++......+. .....++.-++.|
T Consensus 178 -~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i 254 (341)
T PLN02153 178 -GENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHAVVGKYI 254 (341)
T ss_pred -CCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence 21 1112334567899999998764310 0 01123555553 2467999765421111 1112223345688
Q ss_pred EEEEEeeCC-------------ceEEEEEeCCCCeEEEEEE
Q 018497 299 FIRGECRHG-------------GYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 299 ~~~~~~~~~-------------~~~l~~yd~~t~~~~~v~~ 326 (355)
|+. .... .+.++.||+++++|+.+..
T Consensus 255 yv~--GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 255 IIF--GGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred EEE--CcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 888 3110 0158999999999998854
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.13 E-value=2.3e-08 Score=92.18 Aligned_cols=216 Identities=16% Similarity=0.182 Sum_probs=127.1
Q ss_pred EeeeCceEEEeecCCCCceEEEEc--CCcccEEecCCCCC-CCce----------eEEE-EecCCCCCCc---EEEE--E
Q 018497 98 VGSCNGVLCFCSNGSDRSLIYLWN--PLIKKYMTLPRPSL-NPRY----------LGFG-VNSVSGHLDD---FKVV--Y 158 (355)
Q Consensus 98 ~~s~~GLl~l~~~~~~~~~~~V~N--P~T~~~~~LP~~~~-~~~~----------~~~g-~d~~~~~~~~---ykvv--y 158 (355)
.+..++-|.+..+. ....+++.+ |.+++|..+|+++. .+.. +.+| ++.... ... ..-+ |
T Consensus 13 ~~~~~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~-~~~~~~~~~v~~Y 90 (346)
T TIGR03547 13 GAIIGDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS-EGSPQVFDDVYRY 90 (346)
T ss_pred EEEECCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC-CCcceecccEEEE
Confidence 33556666555431 235677777 47889999998873 3321 3333 221100 011 1112 9
Q ss_pred EcCCCceeEeccCCCceeeecccccccee-EeCceEEEEEeeeccC-----------CC--------------------C
Q 018497 159 SLRSNSWKNIAYGFPRSIEINRSHINSSV-FLNGSVHWCARFSCYH-----------DN--------------------S 206 (355)
Q Consensus 159 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~~-----------~~--------------------~ 206 (355)
|..+++|+.++..+|...... . ++ .++|+||.+++..... +. .
T Consensus 91 d~~~~~W~~~~~~~p~~~~~~-~----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 91 DPKKNSWQKLDTRSPVGLLGA-S----GFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred ECCCCEEecCCCCCCCcccce-e----EEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 999999999872233322211 1 33 6899999998753100 00 0
Q ss_pred CCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497 207 CPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 285 (355)
Q Consensus 207 ~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 285 (355)
....+.+||+.+++|+.+ ++| .... ....++..+|+|+++++.........++|..+-..++..|.++..++....
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~~p-~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~ 242 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGENP-FLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS 242 (346)
T ss_pred ccceEEEEECCCCceeECccCC-CCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence 125799999999999998 666 3211 345677889999999886432223345666542223468998887764321
Q ss_pred -----eeEeEEEeeCCcEEEEEEeeCC---------------------ceEEEEEeCCCCeEEEEE
Q 018497 286 -----IWWPLGFTERGKIFIRGECRHG---------------------GYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 286 -----~~~~~~~~~~g~i~~~~~~~~~---------------------~~~l~~yd~~t~~~~~v~ 325 (355)
.....++..+|+||+.| +.. ...+.+||+++++|+.+.
T Consensus 243 ~~~~~~~~~~a~~~~~~Iyv~G--G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 243 SSQEGLAGAFAGISNGVLLVAG--GANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CccccccEEeeeEECCEEEEee--cCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 01122334578999983 111 014678999999998874
No 13
>PLN02193 nitrile-specifier protein
Probab=99.12 E-value=5.9e-08 Score=92.94 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=118.3
Q ss_pred ceEEEEcCCcccEEecCCCC---CC-C-ce---------eEEE-EecCCCCCCcEEEE--EEcCCCceeEeccCC---Cc
Q 018497 115 SLIYLWNPLIKKYMTLPRPS---LN-P-RY---------LGFG-VNSVSGHLDDFKVV--YSLRSNSWKNIAYGF---PR 174 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~---~~-~-~~---------~~~g-~d~~~~~~~~ykvv--yss~t~~W~~~~~~~---p~ 174 (355)
..++++||.+++|..+|+.. .. + .. +.|| ++. ...+.-+ ||+.+++|+.++ .+ |.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~-~~~~~P~ 267 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA----SRQYNGFYSFDTTTNEWKLLT-PVEEGPT 267 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC----CCCCccEEEEECCCCEEEEcC-cCCCCCC
Confidence 35889999999999887532 11 1 11 2222 221 1112212 999999999987 44 32
Q ss_pred eeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecC
Q 018497 175 SIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIP 253 (355)
Q Consensus 175 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~ 253 (355)
..... . .+.+++++|.+++.. .......+.+||+.+++|+.++.| ... .......++..+|+++++....
T Consensus 268 ~R~~h-~----~~~~~~~iYv~GG~~---~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~~gkiyviGG~~ 338 (470)
T PLN02193 268 PRSFH-S----MAADEENVYVFGGVS---ATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVVQGKVWVVYGFN 338 (470)
T ss_pred Cccce-E----EEEECCEEEEECCCC---CCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEECCcEEEEECCC
Confidence 22222 1 677899999998754 122335688999999999988654 322 1123456778899999998765
Q ss_pred CCCccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCC----------c---eEEEEEeCCCC
Q 018497 254 NNTFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHG----------G---YGLLVYNPHSD 319 (355)
Q Consensus 254 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~----------~---~~l~~yd~~t~ 319 (355)
.. ..-.+|+++-. +.+|+++..+...+. .....++..+++||+. .... + ..++.||++|+
T Consensus 339 g~--~~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 339 GC--EVDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIF--GGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CC--ccCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEE--CCccCCccccccCccceeccEEEEEcCcC
Confidence 32 23457777642 467999876521111 1222233445688887 3111 0 14899999999
Q ss_pred eEEEEEE
Q 018497 320 TFKCIGV 326 (355)
Q Consensus 320 ~~~~v~~ 326 (355)
+|+.+..
T Consensus 413 ~W~~~~~ 419 (470)
T PLN02193 413 QWERLDK 419 (470)
T ss_pred EEEEccc
Confidence 9998864
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.12 E-value=3e-08 Score=90.48 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=116.0
Q ss_pred eEEEE-cCCcc-cEEecCCCCCCCce----------eEEE-EecCCCCCCcEEEE--EEcCCCce----eEeccCCCcee
Q 018497 116 LIYLW-NPLIK-KYMTLPRPSLNPRY----------LGFG-VNSVSGHLDDFKVV--YSLRSNSW----KNIAYGFPRSI 176 (355)
Q Consensus 116 ~~~V~-NP~T~-~~~~LP~~~~~~~~----------~~~g-~d~~~~~~~~ykvv--yss~t~~W----~~~~~~~p~~~ 176 (355)
.+++. +|..+ +|..+++++..+.+ +.+| ++. ...++-+ |+..+++| +.++ .+|...
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~----~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~ 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNS----SERFSSVYRITLDESKEELICETIG-NLPFTF 114 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCC----CCCceeEEEEEEcCCceeeeeeEcC-CCCcCc
Confidence 45555 45433 79998877765432 2222 221 1122223 89999888 5666 666554
Q ss_pred eeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCC
Q 018497 177 EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNN 255 (355)
Q Consensus 177 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~ 255 (355)
.... +++++|++|.+++.. +......+.+||+.+++|+.+ ++| ... ......+..+|+|+++++....
T Consensus 115 ~~~~-----~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p-~~~--r~~~~~~~~~~~iYv~GG~~~~ 183 (323)
T TIGR03548 115 ENGS-----ACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFP-GEP--RVQPVCVKLQNELYVFGGGSNI 183 (323)
T ss_pred cCce-----EEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCC-CCC--CCcceEEEECCEEEEEcCCCCc
Confidence 3222 788999999998753 122346799999999999998 477 422 1334567889999999986542
Q ss_pred CccEEEEEEeccCCCCCCeEEEEEecCCCc---e-eEeEEEeeCCcEEEEEEeeCC------------------------
Q 018497 256 TFRSYELWVMKEYGLTESWTKLYTIEKPQR---I-WWPLGFTERGKIFIRGECRHG------------------------ 307 (355)
Q Consensus 256 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~---~-~~~~~~~~~g~i~~~~~~~~~------------------------ 307 (355)
...+++..+- .+..|+++..+..... . .....+..++.||+. ...+
T Consensus 184 --~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 184 --AYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI--GGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred --cccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE--CCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 2234566553 2467998765532111 1 111222345688888 3221
Q ss_pred ------------ceEEEEEeCCCCeEEEEE
Q 018497 308 ------------GYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 308 ------------~~~l~~yd~~t~~~~~v~ 325 (355)
.+.+..||+++++|..+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 125999999999999885
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.04 E-value=1.1e-07 Score=88.62 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=125.7
Q ss_pred EeeeCceEEEeecCCCCceEEEEcCC--cccEEecCCCCC-CCce----------eEEE-EecCCCCCCcEEE----E-E
Q 018497 98 VGSCNGVLCFCSNGSDRSLIYLWNPL--IKKYMTLPRPSL-NPRY----------LGFG-VNSVSGHLDDFKV----V-Y 158 (355)
Q Consensus 98 ~~s~~GLl~l~~~~~~~~~~~V~NP~--T~~~~~LP~~~~-~~~~----------~~~g-~d~~~~~~~~ykv----v-y 158 (355)
.+..++-|.+..+ .....+++.++. +++|..+|+++. .+.. +.+| ++... .....+. . |
T Consensus 34 ~~~~~~~iyv~gG-~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~-~~~~~~~~~~v~~Y 111 (376)
T PRK14131 34 GAIDNNTVYVGLG-SAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN-SEGSPQVFDDVYKY 111 (376)
T ss_pred EEEECCEEEEEeC-CCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC-CCCceeEcccEEEE
Confidence 4556777665442 133457777764 588999998753 2211 3333 22100 0111122 2 9
Q ss_pred EcCCCceeEeccCCCceeeeccccccceeE-eCceEEEEEeeecc-CCC------------------------------C
Q 018497 159 SLRSNSWKNIAYGFPRSIEINRSHINSSVF-LNGSVHWCARFSCY-HDN------------------------------S 206 (355)
Q Consensus 159 ss~t~~W~~~~~~~p~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~-~~~------------------------------~ 206 (355)
|..+++|+.++...|...... . .+. .+|+||.+++.... ... .
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~-~----~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGH-V----AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred eCCCCEEEeCCCCCCCcccce-E----EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 999999999872223332211 1 344 79999999875310 000 0
Q ss_pred CCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497 207 CPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 285 (355)
Q Consensus 207 ~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 285 (355)
....+.+||+.+++|+.+ ++|.... ....++..+++|+++++.........++|..+-...+..|.++..++....
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred cCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 125699999999999998 5662122 234567889999999985432223556776653233468999887764321
Q ss_pred ------eeEeEEEeeCCcEEEEEEeeCC-------------------c--eEEEEEeCCCCeEEEEE
Q 018497 286 ------IWWPLGFTERGKIFIRGECRHG-------------------G--YGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 286 ------~~~~~~~~~~g~i~~~~~~~~~-------------------~--~~l~~yd~~t~~~~~v~ 325 (355)
.....++..+|+||+.| +.+ . ..+-.||+++++|+.+.
T Consensus 264 ~~~~~~~~~~~a~~~~~~iyv~G--G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGVLLVAG--GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCcCCccceEeceeECCEEEEee--ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 11122334567899883 111 0 02457999999998774
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.02 E-value=1.4e-08 Score=99.12 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=120.3
Q ss_pred eEEEEcCCcccEEecCCCCCCCce---------eEEE-EecCCCCCCcE-EEE-EEcCCCceeEeccCCCceeeeccccc
Q 018497 116 LIYLWNPLIKKYMTLPRPSLNPRY---------LGFG-VNSVSGHLDDF-KVV-YSLRSNSWKNIAYGFPRSIEINRSHI 183 (355)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~---------~~~g-~d~~~~~~~~y-kvv-yss~t~~W~~~~~~~p~~~~~~~~~~ 183 (355)
.+.-+|+.+++|..++..+....+ +.+| ++.. .... .+. |+..+++|..++ .+|.......
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~~~--- 337 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKN---NLSVNSVVSYDTKTKSWNKVP-ELIYPRKNPG--- 337 (534)
T ss_pred eeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCC---CCeeccEEEEeCCCCeeeECC-CCCcccccce---
Confidence 345578899999988766533221 2222 2221 1111 233 999999999988 6765443222
Q ss_pred cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEE
Q 018497 184 NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 184 ~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~i 262 (355)
.+.++|.+|.+++.. +......+..||+.+++|+.+ ++| ..+ .....+..+|+|+++++........-.+
T Consensus 338 --~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp-~~r---~~~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 338 --VTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLI-FPR---YNPCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred --EEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcC-cCC---ccceEEEECCEEEEECCcCCCCcccceE
Confidence 788999999998754 122345688999999999988 677 444 3456678899999998854311112234
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCC-------ceEEEEEeCCCCeEEEEE
Q 018497 263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHG-------GYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~-------~~~l~~yd~~t~~~~~v~ 325 (355)
+..+- .+.+|.....++... ....++..++.||+. .+.. ...+..||+++++|+.+.
T Consensus 409 ~~yd~--~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 409 ECFSL--NTNKWSKGSPLPISH--YGGCAIYHDGKIYVI--GGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EEEeC--CCCeeeecCCCCccc--cCceEEEECCEEEEE--CCccCCCCCcccceEEEecCCCCceeeCC
Confidence 55543 236799877665443 222334456789888 3111 114899999999999884
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.02 E-value=2.9e-08 Score=95.37 Aligned_cols=155 Identities=6% Similarity=-0.065 Sum_probs=105.3
Q ss_pred eeeccCCcccccCCCCCCCCCCCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce----------e
Q 018497 71 GFYSTKCKEFEDLCDPPFRTQLADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY----------L 140 (355)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~ 140 (355)
..|++..+.|..++....+ ......++.+|-|.+.++.........++|.+++|..+|+++..+.. +
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSP---RLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred EEEECCCCEEEECCCCCch---hhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 3577777777766532222 12233456788887666422234577889999999999998866422 3
Q ss_pred EEE-EecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC
Q 018497 141 GFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK 218 (355)
Q Consensus 141 ~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~ 218 (355)
.+| .+.. . ..+- ||.++++|+.++ .++....... .+.++|++|.+++. ..+||+++
T Consensus 367 viGG~~~~---~--~~ve~ydp~~~~W~~~~-~m~~~r~~~~-----~~~~~~~IYv~GG~-----------~e~ydp~~ 424 (480)
T PHA02790 367 VIGGHSET---D--TTTEYLLPNHDQWQFGP-STYYPHYKSC-----ALVFGRRLFLVGRN-----------AEFYCESS 424 (480)
T ss_pred EecCcCCC---C--ccEEEEeCCCCEEEeCC-CCCCccccce-----EEEECCEEEEECCc-----------eEEecCCC
Confidence 332 2211 1 1222 999999999998 6765544321 77899999998752 56799999
Q ss_pred ceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCC
Q 018497 219 EIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPN 254 (355)
Q Consensus 219 ~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~ 254 (355)
++|+.+ ++| ..+ ....+++.+|+|+++++...
T Consensus 425 ~~W~~~~~m~-~~r---~~~~~~v~~~~IYviGG~~~ 457 (480)
T PHA02790 425 NTWTLIDDPI-YPR---DNPELIIVDNKLLLIGGFYR 457 (480)
T ss_pred CcEeEcCCCC-CCc---cccEEEEECCEEEEECCcCC
Confidence 999998 566 433 45678899999999998653
No 18
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.92 E-value=8.9e-10 Score=69.84 Aligned_cols=41 Identities=27% Similarity=0.702 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHH
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFV 45 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~ 45 (355)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 46899999999999999999999999999999999887543
No 19
>PLN02153 epithiospecifier protein
Probab=98.89 E-value=8.9e-07 Score=81.47 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=127.4
Q ss_pred eeeccCCcccccCCCCCCCCCCC-CeEEEeeeCceEEEeecC---CCCceEEEEcCCcccEEecCCC-----CCCCce--
Q 018497 71 GFYSTKCKEFEDLCDPPFRTQLA-DLDVVGSCNGVLCFCSNG---SDRSLIYLWNPLIKKYMTLPRP-----SLNPRY-- 139 (355)
Q Consensus 71 ~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~s~~GLl~l~~~~---~~~~~~~V~NP~T~~~~~LP~~-----~~~~~~-- 139 (355)
..|+.....|..++.....+... ....+++.+|.|.+..+. .....+.++||.|++|..++++ +..+..
T Consensus 53 ~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~ 132 (341)
T PLN02153 53 YVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHS 132 (341)
T ss_pred EEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeE
Confidence 46777777777654221111111 123345556666555431 1224688999999999998765 222211
Q ss_pred --------eEEE-EecCCC-C-CCcEE-EE-EEcCCCceeEeccCCCcee--eeccccccceeEeCceEEEEEeeecc--
Q 018497 140 --------LGFG-VNSVSG-H-LDDFK-VV-YSLRSNSWKNIAYGFPRSI--EINRSHINSSVFLNGSVHWCARFSCY-- 202 (355)
Q Consensus 140 --------~~~g-~d~~~~-~-~~~yk-vv-yss~t~~W~~~~~~~p~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-- 202 (355)
+.+| ++.... . ...+. |. ||.++++|+.++ .+.... ..... .+.++|++|.+.+....
T Consensus 133 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~-~~~~~~~~r~~~~----~~~~~~~iyv~GG~~~~~~ 207 (341)
T PLN02153 133 MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP-DPGENFEKRGGAG----FAVVQGKIWVVYGFATSIL 207 (341)
T ss_pred EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC-CCCCCCCCCCcce----EEEECCeEEEEeccccccc
Confidence 2332 222100 0 01122 22 999999999887 432111 11111 57899999998654210
Q ss_pred ---CCCCCCcEEEEEEcCCceeeEec----CCCCCCCCCCceEEEEECCeEEEEEecCCC--------CccEEEEEEecc
Q 018497 203 ---HDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDDADKYLNVFDGYLCVFATIPNN--------TFRSYELWVMKE 267 (355)
Q Consensus 203 ---~~~~~~~~Il~fD~~~~~~~~i~----lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~--------~~~~l~iW~l~~ 267 (355)
........+.+||+.+++|+.++ +| ..+ .....+..+++|+++++.... ....-++|.++-
T Consensus 208 ~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~ 283 (341)
T PLN02153 208 PGGKSDYESNAVQFFDPASGKWTEVETTGAKP-SAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT 283 (341)
T ss_pred cCCccceecCceEEEEcCCCcEEeccccCCCC-CCc---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEc
Confidence 00112356999999999999884 35 333 334567889999999985310 001126888885
Q ss_pred CCCCCCeEEEEEecCCCc---e--eEeEEEeeCCcEEEEEEeeC-Cc----eEEEEEeCC
Q 018497 268 YGLTESWTKLYTIEKPQR---I--WWPLGFTERGKIFIRGECRH-GG----YGLLVYNPH 317 (355)
Q Consensus 268 ~~~~~~W~~~~~i~~~~~---~--~~~~~~~~~g~i~~~~~~~~-~~----~~l~~yd~~ 317 (355)
. +..|+++.......+ . .....+..+++||+. ... +. .+++.|+..
T Consensus 284 ~--~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~--gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 284 E--TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMH--GGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred C--ccEEEeccCCCCCCCCCccccccccccCCcceEEEE--cCcCCCCccccceEEEecc
Confidence 3 468998764322211 1 122333344578877 311 11 157777654
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.82 E-value=6.9e-06 Score=76.61 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=92.6
Q ss_pred EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCC--CCCcEEEEEEcCCceeeEe-cCCCCCCCC-
Q 018497 158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTV-MMPYDLSTD- 233 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--~~~~~Il~fD~~~~~~~~i-~lP~~~~~~- 233 (355)
||.++++|+.++ .+|........ .+.++++||.+++.. ... ........||+++++|..+ ++| .....
T Consensus 194 YD~~t~~W~~~~-~~p~~~~~~~a----~v~~~~~iYv~GG~~--~~~~~~~~~~~~~~~~~~~~W~~~~~~p-~~~~~~ 265 (376)
T PRK14131 194 YDPSTNQWKNAG-ESPFLGTAGSA----VVIKGNKLWLINGEI--KPGLRTDAVKQGKFTGNNLKWQKLPDLP-PAPGGS 265 (376)
T ss_pred EECCCCeeeECC-cCCCCCCCcce----EEEECCEEEEEeeeE--CCCcCChhheEEEecCCCcceeecCCCC-CCCcCC
Confidence 999999999988 67753322222 678899999998764 111 1223345667899999988 677 43311
Q ss_pred ---C-CceEEEEECCeEEEEEecCCCCc------cE-------EEEEEeccC-CCCCCeEEEEEecCCCceeEeEEEeeC
Q 018497 234 ---D-ADKYLNVFDGYLCVFATIPNNTF------RS-------YELWVMKEY-GLTESWTKLYTIEKPQRIWWPLGFTER 295 (355)
Q Consensus 234 ---~-~~~~L~~~~G~L~~v~~~~~~~~------~~-------l~iW~l~~~-~~~~~W~~~~~i~~~~~~~~~~~~~~~ 295 (355)
. .....+..+|+|+++++...... .. -.+|..+-| .....|+....++.... ...++.-+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~~~av~~~ 343 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--YGVSVSWN 343 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--ceEEEEeC
Confidence 1 11235678999999987542100 00 012333322 12367998877765432 22344456
Q ss_pred CcEEEEEEeeCCc---eEEEEEeCCCCeEEE
Q 018497 296 GKIFIRGECRHGG---YGLLVYNPHSDTFKC 323 (355)
Q Consensus 296 g~i~~~~~~~~~~---~~l~~yd~~t~~~~~ 323 (355)
|+||+.|-....+ .++..|+++++++..
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 7899983110111 168888888877653
No 21
>PLN02193 nitrile-specifier protein
Probab=98.80 E-value=9.5e-07 Score=84.69 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=94.0
Q ss_pred EEcCCCceeEecc--CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cC---CCCCC
Q 018497 158 YSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MM---PYDLS 231 (355)
Q Consensus 158 yss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~l---P~~~~ 231 (355)
||.++++|+.++. ..|....... . .+.++++||.+++.. .......+.+||+.+++|+.+ ++ | ..+
T Consensus 198 yD~~~~~W~~~~~~g~~P~~~~~~~-~---~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R 269 (470)
T PLN02193 198 FDLETRTWSISPATGDVPHLSCLGV-R---MVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGP-TPR 269 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCcccce-E---EEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCC-CCc
Confidence 9999999997762 1222111111 1 678999999998754 112335689999999999988 44 3 222
Q ss_pred CCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec-CCCceeEeEEEeeCCcEEEEEEeeCCc--
Q 018497 232 TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGG-- 308 (355)
Q Consensus 232 ~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~-- 308 (355)
....++..+++|++++..... ...-.++.++- ...+|+.+.... ..........+..+++||+. ...++
T Consensus 270 ---~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi--GG~~g~~ 341 (470)
T PLN02193 270 ---SFHSMAADEENVYVFGGVSAT-ARLKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV--YGFNGCE 341 (470)
T ss_pred ---cceEEEEECCEEEEECCCCCC-CCcceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE--ECCCCCc
Confidence 344567789999999886431 11223555543 236798764321 11111112222346788887 32221
Q ss_pred -eEEEEEeCCCCeEEEEEE
Q 018497 309 -YGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 309 -~~l~~yd~~t~~~~~v~~ 326 (355)
..+..||+++++|+.+..
T Consensus 342 ~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred cCceEEEECCCCEEEEecc
Confidence 269999999999999864
No 22
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=1.1e-08 Score=65.17 Aligned_cols=44 Identities=30% Similarity=0.506 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHH
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH 48 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~ 48 (355)
..+||+|++.+||.+|+++++++++.|||+|++++.+..+-..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 45799999999999999999999999999999999998876654
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.71 E-value=6e-09 Score=63.92 Aligned_cols=39 Identities=36% Similarity=0.702 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHH
Q 018497 8 LPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE 46 (355)
Q Consensus 8 LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 46 (355)
||+|++.+||.+|+++++.++++|||+|+.++.++.+.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887644
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.64 E-value=3e-05 Score=71.51 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=80.9
Q ss_pred EEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEE--cCCceeeEe-cCCCCCCC--
Q 018497 158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFD--FAKEIFQTV-MMPYDLST-- 232 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD--~~~~~~~~i-~lP~~~~~-- 232 (355)
||..+++|+.++ .+|........ .+.++|+||.+++.. ........+..|| +++++|+.+ ++| ....
T Consensus 173 YDp~t~~W~~~~-~~p~~~r~~~~----~~~~~~~iyv~GG~~--~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~~r~~~ 244 (346)
T TIGR03547 173 YDPSTNQWRNLG-ENPFLGTAGSA----IVHKGNKLLLINGEI--KPGLRTAEVKQYLFTGGKLEWNKLPPLP-PPKSSS 244 (346)
T ss_pred EECCCCceeECc-cCCCCcCCCce----EEEECCEEEEEeeee--CCCccchheEEEEecCCCceeeecCCCC-CCCCCc
Confidence 999999999998 77753222221 678899999998764 1111123344454 577799988 676 4321
Q ss_pred -CC-CceEEEEECCeEEEEEecCCCC------------------ccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEE
Q 018497 233 -DD-ADKYLNVFDGYLCVFATIPNNT------------------FRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGF 292 (355)
Q Consensus 233 -~~-~~~~L~~~~G~L~~v~~~~~~~------------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 292 (355)
.. .....+..+|+|+++++..... ....++|..+ ...|+.+..++... ....++
T Consensus 245 ~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~--~~~~~~ 318 (346)
T TIGR03547 245 QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGL--AYGVSV 318 (346)
T ss_pred cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCc--eeeEEE
Confidence 11 1233678899999998753100 0134555554 35799988777654 222334
Q ss_pred eeCCcEEEE
Q 018497 293 TERGKIFIR 301 (355)
Q Consensus 293 ~~~g~i~~~ 301 (355)
..+|+||+.
T Consensus 319 ~~~~~iyv~ 327 (346)
T TIGR03547 319 SWNNGVLLI 327 (346)
T ss_pred EcCCEEEEE
Confidence 456789998
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.57 E-value=2.2e-06 Score=78.20 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=94.8
Q ss_pred ceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee----eEe-cCCCCCCCCCCceE
Q 018497 164 SWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF----QTV-MMPYDLSTDDADKY 238 (355)
Q Consensus 164 ~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~----~~i-~lP~~~~~~~~~~~ 238 (355)
+|..++ .+|....... ++.+++.||.+++.. +......+..||+.+++| ..+ ++| ..+ ....
T Consensus 52 ~W~~~~-~lp~~r~~~~-----~~~~~~~lyviGG~~---~~~~~~~v~~~d~~~~~w~~~~~~~~~lp-~~~---~~~~ 118 (323)
T TIGR03548 52 KWVKDG-QLPYEAAYGA-----SVSVENGIYYIGGSN---SSERFSSVYRITLDESKEELICETIGNLP-FTF---ENGS 118 (323)
T ss_pred eEEEcc-cCCccccceE-----EEEECCEEEEEcCCC---CCCCceeEEEEEEcCCceeeeeeEcCCCC-cCc---cCce
Confidence 699888 7776553322 788899999998754 122345788999999988 444 566 433 3456
Q ss_pred EEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCc---eEEEEEe
Q 018497 239 LNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGG---YGLLVYN 315 (355)
Q Consensus 239 L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~---~~l~~yd 315 (355)
.++.+|+|+++++.... ...-.+|.++-. +.+|+++..++... .....++..+++||+. ...+. ..+..||
T Consensus 119 ~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~--GG~~~~~~~~~~~yd 192 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNG-KPSNKSYLFNLE--TQEWFELPDFPGEP-RVQPVCVKLQNELYVF--GGGSNIAYTDGYKYS 192 (323)
T ss_pred EEEECCEEEEEeCcCCC-ccCceEEEEcCC--CCCeeECCCCCCCC-CCcceEEEECCEEEEE--cCCCCccccceEEEe
Confidence 77889999999886331 122346666642 46799877665432 1233444556789998 42221 1478999
Q ss_pred CCCCeEEEEE
Q 018497 316 PHSDTFKCIG 325 (355)
Q Consensus 316 ~~t~~~~~v~ 325 (355)
+++++|+.+.
T Consensus 193 ~~~~~W~~~~ 202 (323)
T TIGR03548 193 PKKNQWQKVA 202 (323)
T ss_pred cCCCeeEECC
Confidence 9999999885
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.39 E-value=3.8e-06 Score=71.22 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=118.9
Q ss_pred CCceEEEEcCCcccEEecCCCCCCC------------ce--eEEEEecCC---CC-C---CcEEEE--EEcCCCceeEec
Q 018497 113 DRSLIYLWNPLIKKYMTLPRPSLNP------------RY--LGFGVNSVS---GH-L---DDFKVV--YSLRSNSWKNIA 169 (355)
Q Consensus 113 ~~~~~~V~NP~T~~~~~LP~~~~~~------------~~--~~~g~d~~~---~~-~---~~ykvv--yss~t~~W~~~~ 169 (355)
+...+.|.|-.+-+|.++|+.-... +| ....|+... +. . +-..++ ||.+++.|+...
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccc
Confidence 4567899999999999999832211 11 111222110 00 1 112222 999999998655
Q ss_pred c--CCCceeeeccccccceeEeCceEEEEEeeeccCCC--CCCcEEEEEEcCCceeeEec---CCCCCCCCCCceEEEEE
Q 018497 170 Y--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDN--SCPWLIVSFDFAKEIFQTVM---MPYDLSTDDADKYLNVF 242 (355)
Q Consensus 170 ~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--~~~~~Il~fD~~~~~~~~i~---lP~~~~~~~~~~~L~~~ 242 (355)
. .+|....... ++++++.+|-+++.. ++ .-..-+.++|+.|.+|+.+. .|+.-++ .-.-.+.
T Consensus 122 v~G~vPgaRDGHs-----AcV~gn~MyiFGGye---~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD---FH~a~~~ 190 (392)
T KOG4693|consen 122 VEGFVPGARDGHS-----ACVWGNQMYIFGGYE---EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD---FHTASVI 190 (392)
T ss_pred eeeecCCccCCce-----eeEECcEEEEecChH---HHHHhhhccceeEeccceeeeehhccCCCchhhh---hhhhhhc
Confidence 2 3444443332 778888899887653 11 11245899999999999983 4412221 1223456
Q ss_pred CCeEEEEEecCCC--------CccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCc-----
Q 018497 243 DGYLCVFATIPNN--------TFRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGG----- 308 (355)
Q Consensus 243 ~G~L~~v~~~~~~--------~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~----- 308 (355)
+|..+++++..+. +...-+|=.|+- ..+.|..-.+-.+.+. ...--.+.-+|++|+. ..+.+
T Consensus 191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~F--GGYng~ln~H 266 (392)
T KOG4693|consen 191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMF--GGYNGTLNVH 266 (392)
T ss_pred cceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCcCCCcccccceEEEcceEEEe--cccchhhhhh
Confidence 6888888876431 111223333432 2367888644443332 1222334457889988 32222
Q ss_pred -eEEEEEeCCCCeEEEEEEecCc
Q 018497 309 -YGLLVYNPHSDTFKCIGVHLPY 330 (355)
Q Consensus 309 -~~l~~yd~~t~~~~~v~~~~~~ 330 (355)
+.|+.||++|..|+.|..+|+.
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hcceeecccccchheeeeccCCC
Confidence 1699999999999999998764
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.00 E-value=0.0003 Score=63.52 Aligned_cols=210 Identities=14% Similarity=0.211 Sum_probs=124.0
Q ss_pred CceEEEEcCCcccEEecCCCCC--CCce-----------eEEEEecCCCCCC---cEEEE--EEcCCCceeEecc-CCCc
Q 018497 114 RSLIYLWNPLIKKYMTLPRPSL--NPRY-----------LGFGVNSVSGHLD---DFKVV--YSLRSNSWKNIAY-GFPR 174 (355)
Q Consensus 114 ~~~~~V~NP~T~~~~~LP~~~~--~~~~-----------~~~g~d~~~~~~~---~ykvv--yss~t~~W~~~~~-~~p~ 174 (355)
.+.+|++|--+.+|+.+-.+.. .++. ..||-.-.+++.. +||=+ |+..+++|+.+.. ..|.
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 3468999999999987644322 2211 2222211111122 34433 9999999998872 2222
Q ss_pred eeeeccccccceeEeCceEEEEEeeeccC-CCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEE-CCeEEEEEe
Q 018497 175 SIEINRSHINSSVFLNGSVHWCARFSCYH-DNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVF-DGYLCVFAT 251 (355)
Q Consensus 175 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~-~G~L~~v~~ 251 (355)
....+ . .|.....|.-+++.+-.+ +...-+-+.+||+++=+|+.+.-+ ... +.+...++.+. +|.++|.++
T Consensus 177 ~RSGH-R----MvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kleps-ga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 177 PRSGH-R----MVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPS-GAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred CCccc-e----eEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCC-CCCCCCCCcceEEecCCCcEEEEcc
Confidence 22222 2 566666666655544000 001124589999999999998545 322 22245666676 799988887
Q ss_pred cCC--------CCccEEEEEEeccC---CCCCCeEEEEEecCCCc--eeEeEEEeeCCc-EEEEEEee---C-------C
Q 018497 252 IPN--------NTFRSYELWVMKEY---GLTESWTKLYTIEKPQR--IWWPLGFTERGK-IFIRGECR---H-------G 307 (355)
Q Consensus 252 ~~~--------~~~~~l~iW~l~~~---~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~-i~~~~~~~---~-------~ 307 (355)
... .....-++|.|+.. +.+..|.++..+.+++- ....++++.+++ ++|-|-+. . -
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F 330 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEF 330 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhh
Confidence 632 13345679999742 24678999888766554 233466777764 44432120 0 0
Q ss_pred ceEEEEEeCCCCeEEEEEEecC
Q 018497 308 GYGLLVYNPHSDTFKCIGVHLP 329 (355)
Q Consensus 308 ~~~l~~yd~~t~~~~~v~~~~~ 329 (355)
.+.|+.||+..++|...++++.
T Consensus 331 ~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 331 FNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred hhhhhheecccchhhHhhhccC
Confidence 1169999999999988877654
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8.4e-05 Score=64.68 Aligned_cols=39 Identities=28% Similarity=0.517 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChH
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKT 43 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~ 43 (355)
+..||||+++.||+.||.++|++...|||||+++.++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 568999999999999999999999999999999988754
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.26 E-value=0.028 Score=54.14 Aligned_cols=200 Identities=11% Similarity=0.084 Sum_probs=117.2
Q ss_pred eEEEEcCCcccEEecCCCCCCC--ce-----------eEEE-EecCCCCCCcEEEE-EEcCCCceeEecc--CCCceeee
Q 018497 116 LIYLWNPLIKKYMTLPRPSLNP--RY-----------LGFG-VNSVSGHLDDFKVV-YSLRSNSWKNIAY--GFPRSIEI 178 (355)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~--~~-----------~~~g-~d~~~~~~~~ykvv-yss~t~~W~~~~~--~~p~~~~~ 178 (355)
.++++|--++.|.........+ .+ +.|| .+... ..-..+. ||..|++|+.+.. .+|.....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~ 166 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAG 166 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC--CChhheEeccCCCCcEEEecCcCCCCCCccc
Confidence 4999999998887655432221 11 2232 12110 1111222 9999999998763 22322222
Q ss_pred ccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecCCCCc
Q 018497 179 NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTF 257 (355)
Q Consensus 179 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~ 257 (355)
+ . .+.++.++|..++.. ......+.+.+||+.+.+|..+... ... .......++..+++++++.+......
T Consensus 167 H-s----~~~~g~~l~vfGG~~--~~~~~~ndl~i~d~~~~~W~~~~~~-g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~ 238 (482)
T KOG0379|consen 167 H-S----ATVVGTKLVVFGGIG--GTGDSLNDLHIYDLETSTWSELDTQ-GEAPSPRYGHAMVVVGNKLLVFGGGDDGDV 238 (482)
T ss_pred c-e----EEEECCEEEEECCcc--CcccceeeeeeeccccccceecccC-CCCCCCCCCceEEEECCeEEEEeccccCCc
Confidence 2 1 677778888887765 2223567899999999999998544 322 22355678888999999987653223
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeCC----ceEEEEEeCCCCeEEEEEEec
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHG----GYGLLVYNPHSDTFKCIGVHL 328 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~----~~~l~~yd~~t~~~~~v~~~~ 328 (355)
.-=++|.|+-. ..+|.+........- ......+. +..+++.|-.... -..++.+|++++.|.++....
T Consensus 239 ~l~D~~~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 239 YLNDVHILDLS--TWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eecceEeeecc--cceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 44468999863 267875443322111 23333333 3345555211111 115899999999999886544
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.24 E-value=0.013 Score=56.56 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=100.2
Q ss_pred EEcCCCceeEecc--CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCC-CCCC
Q 018497 158 YSLRSNSWKNIAY--GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL-STDD 234 (355)
Q Consensus 158 yss~t~~W~~~~~--~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~-~~~~ 234 (355)
++.++..|..... ..|.... ... .+.++..||.+++.. ........|..||+.+.+|..+..- .. ....
T Consensus 93 ~d~~~~~w~~~~~~g~~p~~r~-g~~----~~~~~~~l~lfGG~~--~~~~~~~~l~~~d~~t~~W~~l~~~-~~~P~~r 164 (482)
T KOG0379|consen 93 LDLESQLWTKPAATGDEPSPRY-GHS----LSAVGDKLYLFGGTD--KKYRNLNELHSLDLSTRTWSLLSPT-GDPPPPR 164 (482)
T ss_pred eecCCcccccccccCCCCCccc-cee----EEEECCeEEEEcccc--CCCCChhheEeccCCCCcEEEecCc-CCCCCCc
Confidence 8888889976552 2232221 222 688899999998876 1122345899999999999987321 11 1112
Q ss_pred CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeCC-c---
Q 018497 235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRHG-G--- 308 (355)
Q Consensus 235 ~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~~-~--- 308 (355)
..-.++..+.+|+++++........-++|+++-. ...|.++.+....+- ....+.+. ++++++.+ . .+ +
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~g-G-~~~~~~~ 239 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFG-G-GDDGDVY 239 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEE-CCeEEEEe-c-cccCCce
Confidence 4456777778999998876532245678888853 356999888765543 33334444 44455541 1 22 1
Q ss_pred -eEEEEEeCCCCeEEEEEEec
Q 018497 309 -YGLLVYNPHSDTFKCIGVHL 328 (355)
Q Consensus 309 -~~l~~yd~~t~~~~~v~~~~ 328 (355)
..+..+|+.+.+|+.+...+
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ecceEeeecccceeeeccccC
Confidence 16999999999999765444
No 31
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.20 E-value=0.017 Score=52.66 Aligned_cols=152 Identities=13% Similarity=0.224 Sum_probs=94.7
Q ss_pred EEcCCCceeEecc-CCCceeeeccccccceeEe-CceEEEEEeeeccCC---CCCCcEEEEEEcCCceeeEecCCCCCCC
Q 018497 158 YSLRSNSWKNIAY-GFPRSIEINRSHINSSVFL-NGSVHWCARFSCYHD---NSCPWLIVSFDFAKEIFQTVMMPYDLST 232 (355)
Q Consensus 158 yss~t~~W~~~~~-~~p~~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~---~~~~~~Il~fD~~~~~~~~i~lP~~~~~ 232 (355)
|+.+++.|+.+.. +.|......+ .|.+ .|.+|.+++..-++. ...-.-+-.||+.+.+|..+.++ ....
T Consensus 103 Yn~k~~eWkk~~spn~P~pRsshq-----~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS 176 (521)
T KOG1230|consen 103 YNTKKNEWKKVVSPNAPPPRSSHQ-----AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPS 176 (521)
T ss_pred EeccccceeEeccCCCcCCCccce-----eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCC
Confidence 9999999998872 2233333333 4444 476666665542211 12223478899999999999888 6655
Q ss_pred CCCceEEEEECCeEEEEEecCCCC---ccEEEEEEeccCCCCCCeEEEEEecCC---CceeEeEEEeeCCcEEEEE-Eee
Q 018497 233 DDADKYLNVFDGYLCVFATIPNNT---FRSYELWVMKEYGLTESWTKLYTIEKP---QRIWWPLGFTERGKIFIRG-ECR 305 (355)
Q Consensus 233 ~~~~~~L~~~~G~L~~v~~~~~~~---~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~g~i~~~~-~~~ 305 (355)
.+..-+++.++.+|.++++..+.. ..-=+||.++-. ...|.+... +-. +.....+.++.+|.||+.| .++
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep-sga~PtpRSGcq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC-CCCCCCCCCcceEEecCCCcEEEEcchhH
Confidence 556678999999999998765521 111257777642 367999876 321 1123346667678788873 110
Q ss_pred -----C-C----ceEEEEEeCCC
Q 018497 306 -----H-G----GYGLLVYNPHS 318 (355)
Q Consensus 306 -----~-~----~~~l~~yd~~t 318 (355)
. + ...++..++++
T Consensus 254 ~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 254 QRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhhhhhhhcCceeeeeeeecCCc
Confidence 0 0 11688899888
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.17 E-value=0.011 Score=50.62 Aligned_cols=175 Identities=16% Similarity=0.261 Sum_probs=102.0
Q ss_pred eEEEEcCCcccEEe------cCCCCCCCce-------eEEE-EecC-CCCCCcEEEEEEcCCCceeEecc-CCCceeeec
Q 018497 116 LIYLWNPLIKKYMT------LPRPSLNPRY-------LGFG-VNSV-SGHLDDFKVVYSLRSNSWKNIAY-GFPRSIEIN 179 (355)
Q Consensus 116 ~~~V~NP~T~~~~~------LP~~~~~~~~-------~~~g-~d~~-~~~~~~ykvvyss~t~~W~~~~~-~~p~~~~~~ 179 (355)
-++-++|-|.+|++ +|+....... +.|| |... ...+.+-.+ +|..|-+||.+.. ..|..+...
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~-ld~~TmtWr~~~Tkg~PprwRDF 184 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHV-LDFATMTWREMHTKGDPPRWRDF 184 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhcccee-EeccceeeeehhccCCCchhhhh
Confidence 46778999999986 3443333211 2232 3222 000222222 7888999998863 333333333
Q ss_pred cccccceeEeCceEEEEEeeec----cC--CCCCCcEEEEEEcCCceeeEe----cCCCCCCCCCCceEEEEECCeEEEE
Q 018497 180 RSHINSSVFLNGSVHWCARFSC----YH--DNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVF 249 (355)
Q Consensus 180 ~~~~~~~v~~~G~lyw~~~~~~----~~--~~~~~~~Il~fD~~~~~~~~i----~lP~~~~~~~~~~~L~~~~G~L~~v 249 (355)
.. ++.++|.+|-+++..- ++ +....+.|+++|+.|+.|..- .+| ..+ ..-..-+.+|+++++
T Consensus 185 H~----a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P-~GR---RSHS~fvYng~~Y~F 256 (392)
T KOG4693|consen 185 HT----ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP-GGR---RSHSTFVYNGKMYMF 256 (392)
T ss_pred hh----hhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC-Ccc---cccceEEEcceEEEe
Confidence 33 7888999999976541 11 123347799999999999765 123 222 233456889999999
Q ss_pred EecCCCC-ccEEEEEEeccCCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEE
Q 018497 250 ATIPNNT-FRSYELWVMKEYGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIR 301 (355)
Q Consensus 250 ~~~~~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~ 301 (355)
++..+.. ..--++|.++.. ..-|.++..-...+. ..+-.++..+++||+.
T Consensus 257 GGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF 308 (392)
T KOG4693|consen 257 GGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKVYLF 308 (392)
T ss_pred cccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence 9876521 123468888753 467888655433322 2222334445677776
No 33
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.10 E-value=0.16 Score=44.16 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=110.6
Q ss_pred eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-------EEcCCCceeEeccC
Q 018497 99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-------YSLRSNSWKNIAYG 171 (355)
Q Consensus 99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-------yss~t~~W~~~~~~ 171 (355)
...+|-|++.+. ..++++.++|.+++...+..+. ..++.++.. .+.+-|. ++..++.++.+. .
T Consensus 8 d~~~g~l~~~D~--~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~---~g~l~v~~~~~~~~~d~~~g~~~~~~-~ 77 (246)
T PF08450_consen 8 DPRDGRLYWVDI--PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP---DGRLYVADSGGIAVVDPDTGKVTVLA-D 77 (246)
T ss_dssp ETTTTEEEEEET--TTTEEEEEETTTTEEEEEESSS----EEEEEEECT---TSEEEEEETTCEEEEETTTTEEEEEE-E
T ss_pred ECCCCEEEEEEc--CCCEEEEEECCCCeEEEEecCC----CceEEEEcc---CCEEEEEEcCceEEEecCCCcEEEEe-e
Confidence 334666766664 6789999999999886554443 235666633 3333322 799999998777 3
Q ss_pred CCce---eeeccccccceeEeCceEEEEEeeeccCCCCCC--cEEEEEEcCCceeeEe--cCCCCCCCCCCceEEEEECC
Q 018497 172 FPRS---IEINRSHINSSVFLNGSVHWCARFSCYHDNSCP--WLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFDG 244 (355)
Q Consensus 172 ~p~~---~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~--~~Il~fD~~~~~~~~i--~lP~~~~~~~~~~~L~~~~G 244 (355)
.+.. ......- .+--+|.+|+-.... ...... ..|..+|.. .+.+.+ .+. . .......-+|
T Consensus 78 ~~~~~~~~~~~ND~---~vd~~G~ly~t~~~~--~~~~~~~~g~v~~~~~~-~~~~~~~~~~~--~----pNGi~~s~dg 145 (246)
T PF08450_consen 78 LPDGGVPFNRPNDV---AVDPDGNLYVTDSGG--GGASGIDPGSVYRIDPD-GKVTVVADGLG--F----PNGIAFSPDG 145 (246)
T ss_dssp EETTCSCTEEEEEE---EE-TTS-EEEEEECC--BCTTCGGSEEEEEEETT-SEEEEEEEEES--S----EEEEEEETTS
T ss_pred ccCCCcccCCCceE---EEcCCCCEEEEecCC--CccccccccceEEECCC-CeEEEEecCcc--c----ccceEECCcc
Confidence 3211 1111111 445688987765543 111112 679999999 555544 221 0 0112223345
Q ss_pred e-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe-cCCCc--eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497 245 Y-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI-EKPQR--IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320 (355)
Q Consensus 245 ~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~ 320 (355)
+ |+++....+ . ||.++-......+.....+ ..... ...-+++..+|.|++. ....+ .+..||++.+.
T Consensus 146 ~~lyv~ds~~~----~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~-~I~~~~p~G~~ 216 (246)
T PF08450_consen 146 KTLYVADSFNG----R--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGG-RIVVFDPDGKL 216 (246)
T ss_dssp SEEEEEETTTT----E--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTT-EEEEEETTSCE
T ss_pred hheeecccccc----e--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCC-EEEEECCCccE
Confidence 4 666555443 4 6666643223346654443 33322 2334666678899998 63455 59999999877
Q ss_pred EEEEEEec
Q 018497 321 FKCIGVHL 328 (355)
Q Consensus 321 ~~~v~~~~ 328 (355)
+..+....
T Consensus 217 ~~~i~~p~ 224 (246)
T PF08450_consen 217 LREIELPV 224 (246)
T ss_dssp EEEEE-SS
T ss_pred EEEEcCCC
Confidence 88888773
No 34
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.89 E-value=0.082 Score=46.10 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=83.3
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCCC---------CceEEEEECCeEEEEEecCCC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDD---------ADKYLNVFDGYLCVFATIPNN 255 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~~---------~~~~L~~~~G~L~~v~~~~~~ 255 (355)
-|+.||.+|+-.... ..|+.||+.+++.. ...|| ...-.+ ..+.+++-+..|.++....+.
T Consensus 74 ~vVYngslYY~~~~s--------~~IvkydL~t~~v~~~~~L~-~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 74 HVVYNGSLYYNKYNS--------RNIVKYDLTTRSVVARRELP-GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred eEEECCcEEEEecCC--------ceEEEEECcCCcEEEEEECC-ccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 688999999987754 68999999999998 67888 554221 346788888889999877652
Q ss_pred CccEEEEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee-CCceEEEEEeCCCCeEEEEEEe
Q 018497 256 TFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGYGLLVYNPHSDTFKCIGVH 327 (355)
Q Consensus 256 ~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~~l~~yd~~t~~~~~v~~~ 327 (355)
...+.|-.|+.. ..+..|.-- ++.... --++-..|.+|.+.... .+.+-.+.||..+++-+.+.+.
T Consensus 145 -~g~ivvskld~~tL~v~~tw~T~--~~k~~~---~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 145 -NGNIVVSKLDPETLSVEQTWNTS--YPKRSA---GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred -CCcEEEEeeCcccCceEEEEEec--cCchhh---cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 236888888753 234556542 222111 11222346677762110 1133567899999998887664
No 35
>smart00284 OLF Olfactomedin-like domains.
Probab=96.87 E-value=0.044 Score=47.58 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=85.9
Q ss_pred CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCC-C--------CCCceEEE
Q 018497 171 GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS-T--------DDADKYLN 240 (355)
Q Consensus 171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~-~--------~~~~~~L~ 240 (355)
.+|..+.... -|+.||.+|+..... ..|+.||+.+++.... .+| ... . ....+.|+
T Consensus 69 ~Lp~~~~GtG-----~VVYngslYY~~~~s--------~~iiKydL~t~~v~~~~~Lp-~a~y~~~~~Y~~~~~sdiDlA 134 (255)
T smart00284 69 PLPHAGQGTG-----VVVYNGSLYFNKFNS--------HDICRFDLTTETYQKEPLLN-GAGYNNRFPYAWGGFSDIDLA 134 (255)
T ss_pred ECCCcccccc-----EEEECceEEEEecCC--------ccEEEEECCCCcEEEEEecC-ccccccccccccCCCccEEEE
Confidence 4666544332 799999999965543 6799999999999644 677 432 1 11457899
Q ss_pred EECCeEEEEEecCCCCccEEEEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee---CCceEEEEEe
Q 018497 241 VFDGYLCVFATIPNNTFRSYELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR---HGGYGLLVYN 315 (355)
Q Consensus 241 ~~~G~L~~v~~~~~~~~~~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~---~~~~~l~~yd 315 (355)
+-+..|.++....+ ....+.|-.|+.. ..+..|.. .++.... --++-..|.+|.+ .. .+.+-.+.||
T Consensus 135 vDE~GLWvIYat~~-~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa---~naFmvCGvLY~~--~s~~~~~~~I~yayD 206 (255)
T smart00284 135 VDENGLWVIYATEQ-NAGKIVISKLNPATLTIENTWIT--TYNKRSA---SNAFMICGILYVT--RSLGSKGEKVFYAYD 206 (255)
T ss_pred EcCCceEEEEeccC-CCCCEEEEeeCcccceEEEEEEc--CCCcccc---cccEEEeeEEEEE--ccCCCCCcEEEEEEE
Confidence 99999999987654 2367888888864 23345655 2222111 1222234667776 31 1233577899
Q ss_pred CCCCeEEEEEEe
Q 018497 316 PHSDTFKCIGVH 327 (355)
Q Consensus 316 ~~t~~~~~v~~~ 327 (355)
..|++-+.+.+.
T Consensus 207 t~t~~~~~~~i~ 218 (255)
T smart00284 207 TNTGKEGHLDIP 218 (255)
T ss_pred CCCCccceeeee
Confidence 999988777664
No 36
>PF13964 Kelch_6: Kelch motif
Probab=96.77 E-value=0.004 Score=39.56 Aligned_cols=40 Identities=13% Similarity=0.290 Sum_probs=33.2
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 227 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP 227 (355)
.|.++|.||.+++.. ........+..||+++++|+.+ ++|
T Consensus 7 ~v~~~~~iyv~GG~~--~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYD--NSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEECCEEEEECCCC--CCCCccccEEEEcCCCCcEEECCCCC
Confidence 789999999999876 1134567899999999999998 666
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.50 E-value=0.0096 Score=37.08 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=33.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 227 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP 227 (355)
.+.++|.+|.+++.. ........+..||+.+++|+.+ +||
T Consensus 7 ~~~~~~~iyv~GG~~--~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYD--GNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBE--STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeec--ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 789999999999887 2245567899999999999988 555
No 38
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.35 E-value=0.0017 Score=56.84 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHhcCC-----cccchhhcccchhhHhhhCChHHHHHHH
Q 018497 6 FRLPEDVMIDIFLRLE-----VKNLARLRCVCKSWNTLLTSKTFVEIHL 49 (355)
Q Consensus 6 ~~LP~dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~~~F~~~~~ 49 (355)
..||||++.+||.++= ..+|.++.+|||.|+-...+|.|-+...
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 5799999999999874 4899999999999999999998866643
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.21 E-value=1.1 Score=43.68 Aligned_cols=276 Identities=16% Similarity=0.178 Sum_probs=133.4
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHHHH-HhcCCCCCC----cEEEeec-CCCCceeeeccC--
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVEIH-LNQSMRNPR----PLLFRHG-ISPSYLGFYSTK-- 76 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~~~-~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~-- 76 (355)
...||.|+...||..|+.+++++++.||+.|+.++.+...-... .......+. ..-.... .......+|...
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~ 187 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFR 187 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhh
Confidence 35799999999999999999999999999999999876554432 222211110 0000000 000000111111
Q ss_pred -CcccccCCCCCCCC--C-CCCeEEEee-eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCC
Q 018497 77 -CKEFEDLCDPPFRT--Q-LADLDVVGS-CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHL 151 (355)
Q Consensus 77 -~~~~~~~~~p~~~~--~-~~~~~~~~s-~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~ 151 (355)
...+.....+.... . .....+..- .+|.+ .... ....+.+|+..++.....+........-++.+. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~s--~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~-----~ 259 (537)
T KOG0274|consen 188 LSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFF-KSGS--DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFP-----S 259 (537)
T ss_pred ccccccccccccceeecccCcchhhhheeecCeE-EecC--CCceeEEeecccceEEEeeccCCCCCceeEEEe-----c
Confidence 11121111111000 0 001111111 13333 3331 455667999999988766333222222334443 2
Q ss_pred CcEEEE---EEcCCCceeEeccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-c
Q 018497 152 DDFKVV---YSLRSNSWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-M 225 (355)
Q Consensus 152 ~~ykvv---yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~ 225 (355)
++.+++ .|-...-|.......-........ .+. -.+..+-.. +...+.|.++|+.+.....+ .
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s----tv~~~~~~~~~~~s-------gs~D~tVkVW~v~n~~~l~l~~ 328 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS----SVRCLTIDPFLLVS-------GSRDNTVKVWDVTNGACLNLLR 328 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCc----eEEEEEccCceEee-------ccCCceEEEEeccCcceEEEec
Confidence 223444 333334565222111111111111 111 111222222 12357899999998777555 2
Q ss_pred CCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee
Q 018497 226 MPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR 305 (355)
Q Consensus 226 lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~ 305 (355)
-+ . ..+.-+.+++.+.+.+..++ .+.||..... .-++.+......+..+.+..+ ..++.| .
T Consensus 329 ~h-~-----~~V~~v~~~~~~lvsgs~d~----~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~-~~~~Sg-s- 389 (537)
T KOG0274|consen 329 GH-T-----GPVNCVQLDEPLLVSGSYDG----TVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE-NRLLSG-S- 389 (537)
T ss_pred cc-c-----ccEEEEEecCCEEEEEecCc----eEEEEEhhhc------eeeeeecCCcceEEEEEecCc-ceEEee-e-
Confidence 12 1 23555666677777777764 8999987721 223344332212333333322 556652 2
Q ss_pred CCceEEEEEeCCCC
Q 018497 306 HGGYGLLVYNPHSD 319 (355)
Q Consensus 306 ~~~~~l~~yd~~t~ 319 (355)
.++ .+-++|++++
T Consensus 390 ~D~-~IkvWdl~~~ 402 (537)
T KOG0274|consen 390 LDT-TIKVWDLRTK 402 (537)
T ss_pred ecc-ceEeecCCch
Confidence 454 4888888888
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.06 E-value=0.0044 Score=54.87 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=37.2
Q ss_pred CCCC----HHHHHHHHhcCCcccchhhcccchhhHhhhCChHHHH
Q 018497 6 FRLP----EDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSKTFVE 46 (355)
Q Consensus 6 ~~LP----~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 46 (355)
..|| +++.+.||+.|-..+|+.+..|||+|+++++++..-+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 4689 9999999999999999999999999999999876533
No 41
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.23 E-value=0.35 Score=42.06 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=78.0
Q ss_pred CCCeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCC-ceeEEEEecCCCCCCcE-------EEE-EEcCC
Q 018497 92 LADLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNP-RYLGFGVNSVSGHLDDF-------KVV-YSLRS 162 (355)
Q Consensus 92 ~~~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~~~g~d~~~~~~~~y-------kvv-yss~t 162 (355)
.....+++.-+|-|-.... ..+.+.-.||.++.-..+|++.... ..-.+..|+. ..-+ .+- |+..+
T Consensus 189 ~gpyGi~atpdGsvwyasl--agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 189 GGPYGICATPDGSVWYASL--AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---GRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CCCcceEECCCCcEEEEec--cccceEEcccccCCcceecCCCcccccccccccCcc---CcEEEeccCCceeeEeCccc
Confidence 4456688888888876653 3566778899999888898887632 2234455554 2111 111 89999
Q ss_pred CceeEeccCCCceeeeccccccceeEeCc-eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCC
Q 018497 163 NSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL 230 (355)
Q Consensus 163 ~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~ 230 (355)
.+|++.+ +|..-.... ++++|. -.-|+..-. ...|..||+++++|++++.| ..
T Consensus 264 ~sW~eyp--LPgs~arpy-----s~rVD~~grVW~sea~-------agai~rfdpeta~ftv~p~p-r~ 317 (353)
T COG4257 264 TSWIEYP--LPGSKARPY-----SMRVDRHGRVWLSEAD-------AGAIGRFDPETARFTVLPIP-RP 317 (353)
T ss_pred ccceeee--CCCCCCCcc-----eeeeccCCcEEeeccc-------cCceeecCcccceEEEecCC-CC
Confidence 9999877 554322111 555544 345554332 47899999999999999888 44
No 42
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=2.2 Score=38.61 Aligned_cols=129 Identities=12% Similarity=0.189 Sum_probs=73.5
Q ss_pred EEcCCCceeEeccCCCceeeeccccccceeEeCce-EEEEEeeeccCCCCCCcEE--EEEEcCCceeeEe-cCCCCCCCC
Q 018497 158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGS-VHWCARFSCYHDNSCPWLI--VSFDFAKEIFQTV-MMPYDLSTD 233 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~~~I--l~fD~~~~~~~~i-~lP~~~~~~ 233 (355)
|+..++.|+... ..|+...... ++...|. +-.+.++- ........+ .-|.-...+|..+ ++| .....
T Consensus 201 y~p~~n~W~~~G-~~pf~~~aGs-----a~~~~~n~~~lInGEi--KpGLRt~~~k~~~~~~~~~~w~~l~~lp-~~~~~ 271 (381)
T COG3055 201 YDPSTNQWRNLG-ENPFYGNAGS-----AVVIKGNKLTLINGEI--KPGLRTAEVKQADFGGDNLKWLKLSDLP-APIGS 271 (381)
T ss_pred cccccchhhhcC-cCcccCccCc-----ceeecCCeEEEEccee--cCCccccceeEEEeccCceeeeeccCCC-CCCCC
Confidence 999999999998 7777655442 4554444 54454432 222233334 4445567899888 777 44433
Q ss_pred CC----ceEEEEECCeEEEEEecCC------------------CCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEE
Q 018497 234 DA----DKYLNVFDGYLCVFATIPN------------------NTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLG 291 (355)
Q Consensus 234 ~~----~~~L~~~~G~L~~v~~~~~------------------~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 291 (355)
+. ...-..++|.+.+...... ...-+-+||.+++ .+|..+..++... ... +.
T Consensus 272 ~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l-~YG-~s 345 (381)
T COG3055 272 NKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL-AYG-VS 345 (381)
T ss_pred CccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-cce-EE
Confidence 21 2233445556655554311 0112446788774 6799999988743 222 33
Q ss_pred EeeCCcEEEE
Q 018497 292 FTERGKIFIR 301 (355)
Q Consensus 292 ~~~~g~i~~~ 301 (355)
+.-++.|+++
T Consensus 346 ~~~nn~vl~I 355 (381)
T COG3055 346 LSYNNKVLLI 355 (381)
T ss_pred EecCCcEEEE
Confidence 3445567777
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=95.17 E-value=0.066 Score=33.69 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.5
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 225 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~ 225 (355)
.++++|+||.+++............+..||+++++|+.++
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 7899999999988710023556678999999999999884
No 44
>PF13964 Kelch_6: Kelch motif
Probab=95.05 E-value=0.095 Score=33.06 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=26.8
Q ss_pred eeeCceEEEeecC----CCCceEEEEcCCcccEEecCCCCCC
Q 018497 99 GSCNGVLCFCSNG----SDRSLIYLWNPLIKKYMTLPRPSLN 136 (355)
Q Consensus 99 ~s~~GLl~l~~~~----~~~~~~~V~NP~T~~~~~LP~~~~~ 136 (355)
.+.+|-|.+.++. .....+.++||.|++|..+|+++..
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 4455555444422 1246899999999999999998754
No 45
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.02 E-value=1.1 Score=41.12 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred eEEEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCce----------eEEEEecCCCCCC-----cEEEE-E
Q 018497 95 LDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRY----------LGFGVNSVSGHLD-----DFKVV-Y 158 (355)
Q Consensus 95 ~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~----------~~~g~d~~~~~~~-----~ykvv-y 158 (355)
..+.+..+.-|+..+ ...+..|+++.|+....+|.+...... ++|...+...... .|.++ |
T Consensus 69 ~~F~al~gskIv~~d---~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 69 MDFFALHGSKIVAVD---QSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred eEEEEecCCeEEEEc---CCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 344444344444444 356799999999999999987654321 3333222210011 56766 6
Q ss_pred E--------cCCCceeEeccCCCceeee------ccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe
Q 018497 159 S--------LRSNSWKNIAYGFPRSIEI------NRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV 224 (355)
Q Consensus 159 s--------s~t~~W~~~~~~~p~~~~~------~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i 224 (355)
+ .++.+|+.++ .+|+.... .... +|+ +|.--|+.... ....-.+||+.+.+|+..
T Consensus 146 ~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sY---avv-~g~~I~vS~~~------~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSY---AVV-DGRTIFVSVNG------RRWGTYSFDTESHEWRKH 214 (342)
T ss_pred ccccccccCCCcceEEcCC-CCCccccCCcccceEEEE---EEe-cCCeEEEEecC------CceEEEEEEcCCcceeec
Confidence 5 2345888888 66654432 1222 445 88888886654 013689999999999998
Q ss_pred ---cCCCCCC
Q 018497 225 ---MMPYDLS 231 (355)
Q Consensus 225 ---~lP~~~~ 231 (355)
.|||...
T Consensus 215 GdW~LPF~G~ 224 (342)
T PF07893_consen 215 GDWMLPFHGQ 224 (342)
T ss_pred cceecCcCCc
Confidence 7886443
No 46
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=94.78 E-value=2.4 Score=36.48 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=106.2
Q ss_pred eEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-EEcC----CCceeEeccCCCceeeeccccccceeEeC
Q 018497 116 LIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-YSLR----SNSWKNIAYGFPRSIEINRSHINSSVFLN 190 (355)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-yss~----t~~W~~~~~~~p~~~~~~~~~~~~~v~~~ 190 (355)
.....++-.|.|.+=|.+...+.+.--.++. ..++ |.+. .+.|...- .+|..+.... -|+.|
T Consensus 11 ~~~~~~~~~GsWmrDpl~~~~r~~~~~~~~~-------~~l~E~~~~~~~~~~~~~~~~-~lp~~~~gTg-----~VVyn 77 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPADDRIYVMNYFDG-------LMLTEYTNLEDFKRGRKAEKY-RLPYSWDGTG-----HVVYN 77 (249)
T ss_pred EEEeeccccceeecCCCcccCceEEeccccC-------ceEEEeccHHHhhccCcceEE-eCCCCccccc-----eEEEc
Confidence 3444555668888777666443332222222 2333 4442 35666666 6777776554 79999
Q ss_pred ceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCC---------CCceEEEEECCeEEEEEecCCCCccEE
Q 018497 191 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTD---------DADKYLNVFDGYLCVFATIPNNTFRSY 260 (355)
Q Consensus 191 G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~---------~~~~~L~~~~G~L~~v~~~~~~~~~~l 260 (355)
|.+|+-.... ..|+.||++++.- ....+| ..... ...+.+++-+..|.++....+ ....+
T Consensus 78 Gs~yynk~~t--------~~ivky~l~~~~~~~~~~lp-~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~-~~g~i 147 (249)
T KOG3545|consen 78 GSLYYNKAGT--------RNIIKYDLETRTVAGSAALP-YAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPE-NAGTI 147 (249)
T ss_pred ceEEeeccCC--------cceEEEEeecceeeeeeecc-ccccCCCcccccCCCccccceecccceeEEecccc-cCCcE
Confidence 9999987654 6899999998543 333566 43311 134678888888988887655 23567
Q ss_pred EEEEeccC--CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee-CCce-EE-EEEeCCCCeEEEEEEe
Q 018497 261 ELWVMKEY--GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR-HGGY-GL-LVYNPHSDTFKCIGVH 327 (355)
Q Consensus 261 ~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~-~~~~-~l-~~yd~~t~~~~~v~~~ 327 (355)
.|-.|+.. ..+..|.--. +... .--++...|.+|.+ .. .... .+ +.||..+++-+.+.+.
T Consensus 148 v~skLdp~tl~~e~tW~T~~--~k~~---~~~aF~iCGvLY~v--~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTL--PKRS---AGNAFMICGVLYVV--HSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EeeccCHHHhheeeeecccc--CCCC---cCceEEEeeeeEEE--eccccCCceEEEEEEcCCCceeccccc
Confidence 67788763 2335564321 1111 01223334666666 31 1111 23 6899999999887654
No 47
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=94.21 E-value=0.43 Score=37.15 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=54.1
Q ss_pred cEEEEEEcCCc--eeeEecCCCCCCCC-----------CCceEEEEECCeEEEEEecCC------CCccEEEEEEeccC-
Q 018497 209 WLIVSFDFAKE--IFQTVMMPYDLSTD-----------DADKYLNVFDGYLCVFATIPN------NTFRSYELWVMKEY- 268 (355)
Q Consensus 209 ~~Il~fD~~~~--~~~~i~lP~~~~~~-----------~~~~~L~~~~G~L~~v~~~~~------~~~~~l~iW~l~~~- 268 (355)
.+|+.+|+-.+ .++.|+|| ..... ...-.++..+|+|.+|..... ....++.+|.|...
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP-~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~ 84 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLP-PPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPE 84 (131)
T ss_pred CCEEEEECCCCCccEEEEeCC-CccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCC
Confidence 37899998765 66778888 54311 123457778999999987643 13468999999974
Q ss_pred CCCCCeEEEEEecCCCc
Q 018497 269 GLTESWTKLYTIEKPQR 285 (355)
Q Consensus 269 ~~~~~W~~~~~i~~~~~ 285 (355)
....+|.+-++++...+
T Consensus 85 ~~~~~W~~d~~v~~~di 101 (131)
T PF07762_consen 85 GSSWEWKKDCEVDLSDI 101 (131)
T ss_pred CCCCCEEEeEEEEhhhc
Confidence 23578999999887664
No 48
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.41 E-value=3.3 Score=38.11 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=61.4
Q ss_pred EEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCcc------EEEEEEecc----CCCCCCeEEEEE
Q 018497 210 LIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFR------SYELWVMKE----YGLTESWTKLYT 279 (355)
Q Consensus 210 ~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~------~l~iW~l~~----~~~~~~W~~~~~ 279 (355)
.++.||+++...... | ...........+..+|+||+.......... .+++-.... ......|.-..
T Consensus 87 ~t~vyDt~t~av~~~--P-~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--P-RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CeEEEECCCCeEecc--C-CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 589999999887754 4 322222334555668889999876431111 555443331 11223444332
Q ss_pred ecCCCc---e------eEeEEEeeCC-cEEEEEEeeCCc-eEEEEEeCCCCeEEEE
Q 018497 280 IEKPQR---I------WWPLGFTERG-KIFIRGECRHGG-YGLLVYNPHSDTFKCI 324 (355)
Q Consensus 280 i~~~~~---~------~~~~~~~~~g-~i~~~~~~~~~~-~~l~~yd~~t~~~~~v 324 (355)
++.+++ . +..-++. +| .|++. . .+. ...+.||.++.+|+++
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS--~-~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVS--V-NGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEE--e-cCCceEEEEEEcCCcceeec
Confidence 444444 1 4445555 56 67775 3 322 1389999999999988
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.40 E-value=6.9 Score=36.67 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=58.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 263 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW 263 (355)
++..+|.+|.....+ .+.++|+.+. .|+. ++. .. ..++..+|+|++..... .+.
T Consensus 252 P~v~~~~vy~~~~~g---------~l~ald~~tG~~~W~~-~~~-~~------~~~~~~~~~vy~~~~~g-----~l~-- 307 (394)
T PRK11138 252 PVVVGGVVYALAYNG---------NLVALDLRSGQIVWKR-EYG-SV------NDFAVDGGRIYLVDQND-----RVY-- 307 (394)
T ss_pred cEEECCEEEEEEcCC---------eEEEEECCCCCEEEee-cCC-Cc------cCcEEECCEEEEEcCCC-----eEE--
Confidence 788899999877654 8999999865 4543 222 11 12344566776655332 222
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.++....+..|.... ..... ...|+. .+|.||+. . .++ .++.+|.++++...
T Consensus 308 ald~~tG~~~W~~~~-~~~~~-~~sp~v--~~g~l~v~--~-~~G-~l~~ld~~tG~~~~ 359 (394)
T PRK11138 308 ALDTRGGVELWSQSD-LLHRL-LTAPVL--YNGYLVVG--D-SEG-YLHWINREDGRFVA 359 (394)
T ss_pred EEECCCCcEEEcccc-cCCCc-ccCCEE--ECCEEEEE--e-CCC-EEEEEECCCCCEEE
Confidence 222211223454311 00000 122332 35678777 5 667 49999999988643
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.26 E-value=7.3 Score=36.52 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=91.7
Q ss_pred eeCceEEEeecCCCCceEEEEcCCcccEEe---cCCCCCC-Cce-eEEEEecCCCCCCcEEEE-EEcCCC--ceeEeccC
Q 018497 100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMT---LPRPSLN-PRY-LGFGVNSVSGHLDDFKVV-YSLRSN--SWKNIAYG 171 (355)
Q Consensus 100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~---LP~~~~~-~~~-~~~g~d~~~~~~~~ykvv-yss~t~--~W~~~~~~ 171 (355)
..+|.|.+.. ..+.++.+|+.|++.+. ++..... +.. -+..+-. +.+-++. +|.+++ .|+.-. .
T Consensus 118 v~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~----~~~g~l~ald~~tG~~~W~~~~-~ 189 (394)
T PRK11138 118 VAGGKVYIGS---EKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVH----TSNGMLQALNESDGAVKWTVNL-D 189 (394)
T ss_pred EECCEEEEEc---CCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEE----CCCCEEEEEEccCCCEeeeecC-C
Confidence 3466766655 45678888999876543 2221111 100 0001111 1111333 787776 688654 2
Q ss_pred CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeE-ecCCCCCCCC-----CCceEEEEEC
Q 018497 172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQT-VMMPYDLSTD-----DADKYLNVFD 243 (355)
Q Consensus 172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~-i~lP~~~~~~-----~~~~~L~~~~ 243 (355)
.|......... ++..+|.+|+...++ .+.++|..+.+ |+. +..| ..... .....-+..+
T Consensus 190 ~~~~~~~~~~s---P~v~~~~v~~~~~~g---------~v~a~d~~~G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 190 VPSLTLRGESA---PATAFGGAIVGGDNG---------RVSAVLMEQGQLIWQQRISQP-TGATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred CCcccccCCCC---CEEECCEEEEEcCCC---------EEEEEEccCChhhheeccccC-CCccchhcccccCCCcEEEC
Confidence 22111111122 677888888866554 79999988664 543 2223 21100 0011223457
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
|.|++..... .+ ..++-...+..|.... ... ..+ +..+|.||+. . .++ .++.+|.++++.
T Consensus 257 ~~vy~~~~~g-----~l--~ald~~tG~~~W~~~~--~~~---~~~--~~~~~~vy~~--~-~~g-~l~ald~~tG~~ 316 (394)
T PRK11138 257 GVVYALAYNG-----NL--VALDLRSGQIVWKREY--GSV---NDF--AVDGGRIYLV--D-QND-RVYALDTRGGVE 316 (394)
T ss_pred CEEEEEEcCC-----eE--EEEECCCCCEEEeecC--CCc---cCc--EEECCEEEEE--c-CCC-eEEEEECCCCcE
Confidence 7777765422 33 3343222245676532 110 112 2245678887 6 566 499999998864
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.04 E-value=3 Score=35.82 Aligned_cols=124 Identities=11% Similarity=0.128 Sum_probs=67.3
Q ss_pred EeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCC---CCCCceEEEE--ECCeEEEEEecC---CCCccE
Q 018497 188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLS---TDDADKYLNV--FDGYLCVFATIP---NNTFRS 259 (355)
Q Consensus 188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~---~~~~~~~L~~--~~G~L~~v~~~~---~~~~~~ 259 (355)
.+||.+ .+... ..+..+|+.|.++..++.| ... .......++- ..+.--++.... ......
T Consensus 3 sCnGLl-c~~~~---------~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~ 71 (230)
T TIGR01640 3 PCDGLI-CFSYG---------KRLVVWNPSTGQSRWLPTP-KSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE 71 (230)
T ss_pred ccceEE-EEecC---------CcEEEECCCCCCEEecCCC-CCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence 468888 33322 3799999999999998765 331 1111122221 113222222211 111246
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeC-Cce-EEEEEeCCCCeEEE-EEEe
Q 018497 260 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRH-GGY-GLLVYNPHSDTFKC-IGVH 327 (355)
Q Consensus 260 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~-~l~~yd~~t~~~~~-v~~~ 327 (355)
.+|..+.. .+|......+........ ++.-+|.++....... ... .++.||+++++++. +..+
T Consensus 72 ~~Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 72 HQVYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEEEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 67777764 479987632221111222 5556788888732111 111 59999999999995 6554
No 52
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.78 E-value=0.25 Score=30.88 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=24.2
Q ss_pred eeEe-CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCC
Q 018497 186 SVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMP 227 (355)
Q Consensus 186 ~v~~-~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP 227 (355)
++.+ ++.+|.+++.. ........+..||+.+++|+.+ ++|
T Consensus 7 ~~~~~~~~i~v~GG~~--~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRD--SSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEE-TTEEEEE--EE--E-TEE---EEEEETTTTEEEE--SS-
T ss_pred EEEEeCCeEEEECCCC--CCCcccCCEEEEECCCCEEEECCCCC
Confidence 5555 68999988776 1122345689999999999998 555
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.52 E-value=2.9 Score=36.27 Aligned_cols=165 Identities=14% Similarity=0.164 Sum_probs=90.4
Q ss_pred EEEEEEcCCCceeEeccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC----ceeeEecCCCC
Q 018497 154 FKVVYSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK----EIFQTVMMPYD 229 (355)
Q Consensus 154 ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~----~~~~~i~lP~~ 229 (355)
+.++||..++++|.+. +.....+... .+.-||.+.-.++.. .....|-.|++.+ ..|.+. + .
T Consensus 47 ~s~~yD~~tn~~rpl~--v~td~FCSgg----~~L~dG~ll~tGG~~-----~G~~~ir~~~p~~~~~~~~w~e~--~-~ 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT--VQTDTFCSGG----AFLPDGRLLQTGGDN-----DGNKAIRIFTPCTSDGTCDWTES--P-N 112 (243)
T ss_pred EEEEEecCCCcEEecc--CCCCCcccCc----CCCCCCCEEEeCCCC-----ccccceEEEecCCCCCCCCceEC--c-c
Confidence 5566999999999877 2332222221 556688887665553 2345677888765 556543 2 2
Q ss_pred CCC-CCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCC-CCCCeEEEEEec-CCCc-eeEeEEEeeCCcEEEEEEe
Q 018497 230 LST-DDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYG-LTESWTKLYTIE-KPQR-IWWPLGFTERGKIFIRGEC 304 (355)
Q Consensus 230 ~~~-~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~-~~~~-~~~~~~~~~~g~i~~~~~~ 304 (355)
.+. .++......+ +|++.++++... ...+.|=-+... ....|....... .... .+-.+.+..+|+||+. .
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~---~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~--a 187 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNN---PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF--A 187 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCC---CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE--E
Confidence 222 1244444444 599999998765 466655432211 111222111111 1111 3444666789999998 5
Q ss_pred eCCceEEEEEeCCCCeE-EEE-EEecCcceeEEeeeeccee
Q 018497 305 RHGGYGLLVYNPHSDTF-KCI-GVHLPYYAIQVLNFVESII 343 (355)
Q Consensus 305 ~~~~~~l~~yd~~t~~~-~~v-~~~~~~~~~~~~~y~~Slv 343 (355)
... -..||.+++++ +.+ .+.+. ...++...|-|
T Consensus 188 -n~~--s~i~d~~~n~v~~~lP~lPg~---~R~YP~sgssv 222 (243)
T PF07250_consen 188 -NRG--SIIYDYKTNTVVRTLPDLPGG---PRNYPASGSSV 222 (243)
T ss_pred -cCC--cEEEeCCCCeEEeeCCCCCCC---ceecCCCcceE
Confidence 333 57889999976 444 33332 33444444443
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.90 E-value=4 Score=38.25 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=80.8
Q ss_pred eEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEe---cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEE
Q 018497 187 VFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 187 v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i---~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~i 262 (355)
+..||.|...+... ..+-.||..+... +.+ ..| . .......-++.+.+.+.++ ....+
T Consensus 76 fR~DG~LlaaGD~s--------G~V~vfD~k~r~iLR~~~ah~ap-v-----~~~~f~~~d~t~l~s~sDd----~v~k~ 137 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES--------GHVKVFDMKSRVILRQLYAHQAP-V-----HVTKFSPQDNTMLVSGSDD----KVVKY 137 (487)
T ss_pred eecCCeEEEccCCc--------CcEEEeccccHHHHHHHhhccCc-e-----eEEEecccCCeEEEecCCC----ceEEE
Confidence 34579999887665 6789999655222 222 122 1 2233444566776666655 48899
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEeEEEeeC-CcEEEEEEeeCCceEEEEEeCCCCeEEEEEEecCcceeEEeeeecc
Q 018497 263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTER-GKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVES 341 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~S 341 (355)
|.+... . . +..+.-...+.+...+... +-|++. ..+|+ .+-.||.++.+-+.++++.. .-+|+
T Consensus 138 ~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvt--GsYDg-~vrl~DtR~~~~~v~elnhg-------~pVe~ 201 (487)
T KOG0310|consen 138 WDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVT--GSYDG-KVRLWDTRSLTSRVVELNHG-------CPVES 201 (487)
T ss_pred EEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEe--cCCCc-eEEEEEeccCCceeEEecCC-------Cceee
Confidence 999862 2 3 4555544446666666543 458888 54788 49999999997444455421 23566
Q ss_pred eeccCCCCcccc
Q 018497 342 IIEPVSQSLILS 353 (355)
Q Consensus 342 lv~~~~~~~~~~ 353 (355)
.+-++++++|.+
T Consensus 202 vl~lpsgs~ias 213 (487)
T KOG0310|consen 202 VLALPSGSLIAS 213 (487)
T ss_pred EEEcCCCCEEEE
Confidence 666666666543
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.82 E-value=7.4 Score=33.15 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=91.6
Q ss_pred eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC---C-ce----eEEEEecCCCCCCcEEEE-EEcCCC--ceeE-e
Q 018497 101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN---P-RY----LGFGVNSVSGHLDDFKVV-YSLRSN--SWKN-I 168 (355)
Q Consensus 101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~---~-~~----~~~g~d~~~~~~~~ykvv-yss~t~--~W~~-~ 168 (355)
.+|.++... ....++.+|+.|++...--..+.. . .. +.++. . .+ .+. ++.+++ .|+. .
T Consensus 35 ~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~---~~--~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--S---DG--SLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--T---TS--EEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--c---ee--eeEecccCCcceeeeecc
Confidence 788887775 578899999999887532222221 1 00 11111 1 22 333 786665 8984 4
Q ss_pred ccCCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee--eE-ecCCCCCCC-----CCCceEEE
Q 018497 169 AYGFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF--QT-VMMPYDLST-----DDADKYLN 240 (355)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~--~~-i~lP~~~~~-----~~~~~~L~ 240 (355)
. ..+......... ..+.++.+|...... .|.++|+++++- .. +..| .... ......+.
T Consensus 105 ~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g---------~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 105 T-SSPPAGVRSSSS---PAVDGDRLYVGTSSG---------KLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPV 170 (238)
T ss_dssp --SSCTCSTB--SE---EEEETTEEEEEETCS---------EEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEE
T ss_pred c-cccccccccccC---ceEecCEEEEEeccC---------cEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceE
Confidence 4 222221111111 344466777766444 899999987755 33 2333 2111 00123444
Q ss_pred EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497 241 VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320 (355)
Q Consensus 241 ~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~ 320 (355)
..+|.+++..... ..+.+ -++. .+..|... +. . ........++.+|+. . .++ .++.+|++|++
T Consensus 171 ~~~~~v~~~~~~g----~~~~~-d~~t--g~~~w~~~--~~--~--~~~~~~~~~~~l~~~--~-~~~-~l~~~d~~tG~ 233 (238)
T PF13360_consen 171 ISDGRVYVSSGDG----RVVAV-DLAT--GEKLWSKP--IS--G--IYSLPSVDGGTLYVT--S-SDG-RLYALDLKTGK 233 (238)
T ss_dssp CCTTEEEEECCTS----SEEEE-ETTT--TEEEEEEC--SS-----ECECEECCCTEEEEE--E-TTT-EEEEEETTTTE
T ss_pred EECCEEEEEcCCC----eEEEE-ECCC--CCEEEEec--CC--C--ccCCceeeCCEEEEE--e-CCC-EEEEEECCCCC
Confidence 4567665544432 22333 3322 12236221 21 1 111122344556666 4 566 49999999999
Q ss_pred EEE
Q 018497 321 FKC 323 (355)
Q Consensus 321 ~~~ 323 (355)
...
T Consensus 234 ~~W 236 (238)
T PF13360_consen 234 VVW 236 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 56
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.15 E-value=2.7 Score=38.18 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=70.1
Q ss_pred eeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCC-CC--CCCCC---ceEEEEE---CCeEEEEEecC
Q 018497 186 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPY-DL--STDDA---DKYLNVF---DGYLCVFATIP 253 (355)
Q Consensus 186 ~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~-~~--~~~~~---~~~L~~~---~G~L~~v~~~~ 253 (355)
+++. +|.+||+..++ .|...|+..+.-... +.++ .. ..+++ ...+... .|+||+.....
T Consensus 189 ~~~~~~~~~~~F~Sy~G---------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g 259 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEG---------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG 259 (342)
T ss_dssp -EEETTTTEEEEEBTTS---------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE-
T ss_pred cceECCCCeEEEEecCC---------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC
Confidence 4444 36899988877 899999988865544 2221 11 11221 1223332 47999876543
Q ss_pred CC---CccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc--EEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 254 NN---TFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK--IFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 254 ~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~--i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.. ....-+||+++-. .=.++.+|++.. ....++++.+++ +|-. ...++ .|++||..|++...
T Consensus 260 ~~gsHKdpgteVWv~D~~----t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~--~~~~~-~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 260 GEGSHKDPGTEVWVYDLK----THKRVARIPLEH-PIDSIAVSQDDKPLLYAL--SAGDG-TLDVYDAATGKLVR 326 (342)
T ss_dssp -TT-TTS-EEEEEEEETT----TTEEEEEEEEEE-EESEEEEESSSS-EEEEE--ETTTT-EEEEEETTT--EEE
T ss_pred CCCCccCCceEEEEEECC----CCeEEEEEeCCC-ccceEEEccCCCcEEEEE--cCCCC-eEEEEeCcCCcEEe
Confidence 21 3467899999862 226677887654 233577887774 4444 42345 59999999997643
No 57
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=0.72 Score=41.63 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=76.8
Q ss_pred EEcCCCceeEeccCCCceeeeccccccceeEeCc-eEEEEEeeecc-----------CC--------------------C
Q 018497 158 YSLRSNSWKNIAYGFPRSIEINRSHINSSVFLNG-SVHWCARFSCY-----------HD--------------------N 205 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~-----------~~--------------------~ 205 (355)
|+..+++|..++...|....... ++..++ .+|+..+-... .+ -
T Consensus 118 y~p~~nsW~kl~t~sP~gl~G~~-----~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy 192 (381)
T COG3055 118 YDPSTNSWHKLDTRSPTGLVGAS-----TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDY 192 (381)
T ss_pred ecCCCChhheeccccccccccce-----eEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHh
Confidence 99999999999877777643322 566666 88887654320 00 1
Q ss_pred CCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 018497 206 SCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 283 (355)
Q Consensus 206 ~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 283 (355)
..-..+++||+.+++|+.. ..|+-.. .....+.-+++|.++...-...-.+.++|+.+-.+++..|.+.-.++.+
T Consensus 193 ~~n~ev~sy~p~~n~W~~~G~~pf~~~---aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 193 FFNKEVLSYDPSTNQWRNLGENPFYGN---AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred cccccccccccccchhhhcCcCcccCc---cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 1124589999999999998 5774222 1223444456788888765433456677777655456789998666544
No 58
>smart00612 Kelch Kelch domain.
Probab=91.06 E-value=0.69 Score=28.10 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.2
Q ss_pred CcEEEEEEcCCceeeEe-cCCCCCC
Q 018497 208 PWLIVSFDFAKEIFQTV-MMPYDLS 231 (355)
Q Consensus 208 ~~~Il~fD~~~~~~~~i-~lP~~~~ 231 (355)
...+..||+.+++|+.+ ++| ..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~-~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMP-TPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCC-Ccc
Confidence 45789999999999988 666 443
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.78 E-value=12 Score=32.24 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred eeEe--CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEE-ECCeEEEEEecCCCCccEEEE
Q 018497 186 SVFL--NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNV-FDGYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 186 ~v~~--~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~l~i 262 (355)
+++. +|.|||..... ..|..+|+.+++.+.+.+| . . ...... -+|+|+++... .+.+
T Consensus 5 p~~d~~~g~l~~~D~~~--------~~i~~~~~~~~~~~~~~~~-~-~----~G~~~~~~~g~l~v~~~~------~~~~ 64 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPG--------GRIYRVDPDTGEVEVIDLP-G-P----NGMAFDRPDGRLYVADSG------GIAV 64 (246)
T ss_dssp EEEETTTTEEEEEETTT--------TEEEEEETTTTEEEEEESS-S-E----EEEEEECTTSEEEEEETT------CEEE
T ss_pred eEEECCCCEEEEEEcCC--------CEEEEEECCCCeEEEEecC-C-C----ceEEEEccCCEEEEEEcC------ceEE
Confidence 4555 69999997665 6999999999999998888 4 1 122223 35777776542 2222
Q ss_pred EEeccCCCCCCeEEEEEecCC--Cc-eeEeEEEeeCCcEEEEEEeeCC--------ceEEEEEeCCCCeEEEE
Q 018497 263 WVMKEYGLTESWTKLYTIEKP--QR-IWWPLGFTERGKIFIRGECRHG--------GYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~--~~-~~~~~~~~~~g~i~~~~~~~~~--------~~~l~~yd~~t~~~~~v 324 (355)
. +. ...+++........ .. ...-+++..+|.+|+. .... + .++.+++. ++.+.+
T Consensus 65 ~--d~--~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t--~~~~~~~~~~~~g-~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 65 V--DP--DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVT--DSGGGGASGIDPG-SVYRIDPD-GKVTVV 129 (246)
T ss_dssp E--ET--TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEE--EECCBCTTCGGSE-EEEEEETT-SEEEEE
T ss_pred E--ec--CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEE--ecCCCcccccccc-ceEEECCC-CeEEEE
Confidence 2 21 13567777776422 21 2333667778888887 3111 3 48999999 666555
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.36 E-value=18 Score=33.53 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=88.3
Q ss_pred eCceEEEeecCCCCceEEEEcCCcccEEecCCCCCC----Cce--eEEEEecCCCCCCcEEEE-EEcCCC--ceeEeccC
Q 018497 101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLN----PRY--LGFGVNSVSGHLDDFKVV-YSLRSN--SWKNIAYG 171 (355)
Q Consensus 101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~----~~~--~~~g~d~~~~~~~~ykvv-yss~t~--~W~~~~~~ 171 (355)
.+|.+.+.. .+..++.+|+.|++.+.--..... +.. -.+..... .+ ++. +|.+++ .|+.-. .
T Consensus 104 ~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~---~g--~l~a~d~~tG~~~W~~~~-~ 174 (377)
T TIGR03300 104 DGGLVFVGT---EKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTN---DG--RLTALDAATGERLWTYSR-V 174 (377)
T ss_pred cCCEEEEEc---CCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECC---CC--eEEEEEcCCCceeeEEcc-C
Confidence 466666655 456788888888765431111111 000 00001111 11 222 777665 687544 2
Q ss_pred CCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeE-ecCCCCCCCC-----CCceEEEEEC
Q 018497 172 FPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQT-VMMPYDLSTD-----DADKYLNVFD 243 (355)
Q Consensus 172 ~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~-i~lP~~~~~~-----~~~~~L~~~~ 243 (355)
.+......... ++..+|.+|.-... ..+.++|+.++ .|+. +..| ..... .........+
T Consensus 175 ~~~~~~~~~~s---p~~~~~~v~~~~~~---------g~v~ald~~tG~~~W~~~~~~~-~g~~~~~~~~~~~~~p~~~~ 241 (377)
T TIGR03300 175 TPALTLRGSAS---PVIADGGVLVGFAG---------GKLVALDLQTGQPLWEQRVALP-KGRTELERLVDVDGDPVVDG 241 (377)
T ss_pred CCceeecCCCC---CEEECCEEEEECCC---------CEEEEEEccCCCEeeeeccccC-CCCCchhhhhccCCccEEEC
Confidence 22111111122 67788887765443 37999998765 4543 2223 11100 0011223346
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
|.+++.... ..+..+.++. .+..|.... .. ...|. ..++.||+. . .++ .++.+|..+++.
T Consensus 242 ~~vy~~~~~-----g~l~a~d~~t--G~~~W~~~~----~~-~~~p~--~~~~~vyv~--~-~~G-~l~~~d~~tG~~ 301 (377)
T TIGR03300 242 GQVYAVSYQ-----GRVAALDLRS--GRVLWKRDA----SS-YQGPA--VDDNRLYVT--D-ADG-VVVALDRRSGSE 301 (377)
T ss_pred CEEEEEEcC-----CEEEEEECCC--CcEEEeecc----CC-ccCce--EeCCEEEEE--C-CCC-eEEEEECCCCcE
Confidence 777665542 2555555543 235576541 11 12222 235678777 5 566 499999988764
No 61
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.09 E-value=3.5 Score=25.11 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=32.2
Q ss_pred ceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 018497 236 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 281 (355)
Q Consensus 236 ~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 281 (355)
....+..+|+|+++++........-.+|.++-. +..|..+..++
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETT--TTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCC--CCEEEEcCCCC
Confidence 457889999999999876533355567777653 46899987764
No 62
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.50 E-value=21 Score=33.19 Aligned_cols=210 Identities=12% Similarity=0.086 Sum_probs=85.1
Q ss_pred eeCc-eEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCc-E------EEE-EEcCCCceeEecc
Q 018497 100 SCNG-VLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDD-F------KVV-YSLRSNSWKNIAY 170 (355)
Q Consensus 100 s~~G-Ll~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~-y------kvv-yss~t~~W~~~~~ 170 (355)
..+| .|++.........++..|-.|++..+|-..+....+ +....+. ++. | .|. .+++|..=+.+-
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~---~~~~~Yv~~~~~l~~vdL~T~e~~~vy- 118 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPD---DRALYYVKNGRSLRRVDLDTLEERVVY- 118 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TT---SSEEEEEETTTEEEEEETTT--EEEEE-
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecC---CCeEEEEECCCeEEEEECCcCcEEEEE-
Confidence 3445 355554334577899999999999999886543211 1111111 111 1 111 455555544444
Q ss_pred CCCceeeeccccccceeEeCceEEEEEeeec--c------------CCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCC
Q 018497 171 GFPRSIEINRSHINSSVFLNGSVHWCARFSC--Y------------HDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDA 235 (355)
Q Consensus 171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~------------~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~ 235 (355)
..|..+...... .+--++..+.-..... . ........|+..|+.+++...+ .-. .-. .
T Consensus 119 ~~p~~~~g~gt~---v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wl---g 191 (386)
T PF14583_consen 119 EVPDDWKGYGTW---VANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWL---G 191 (386)
T ss_dssp E--TTEEEEEEE---EE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-E---E
T ss_pred ECCcccccccce---eeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccc---c
Confidence 455444322111 2222344443221110 0 0134567899999999998887 322 111 1
Q ss_pred ceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCC-ceEEEE
Q 018497 236 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHG-GYGLLV 313 (355)
Q Consensus 236 ~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~-~~~l~~ 313 (355)
.+...-.+..|.+.+.......-.-+||.++..+. ..|......... ...--....+| .|++....+.+ ...+..
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e--~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGE--SVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTE--EEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCc--ccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 12222233455555544322112347899997653 334443333221 22222234566 45554222122 126888
Q ss_pred EeCCCCeEEEE
Q 018497 314 YNPHSDTFKCI 324 (355)
Q Consensus 314 yd~~t~~~~~v 324 (355)
||++|.+-+.+
T Consensus 269 ~d~~t~~~~~~ 279 (386)
T PF14583_consen 269 YDPDTGERRRL 279 (386)
T ss_dssp E-TTT--EEEE
T ss_pred eCCCCCCceEE
Confidence 99999877655
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=88.23 E-value=15 Score=31.20 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=61.6
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
.+.-+|.+|...... .|.++|..+++..- ..++ .... ......+|++++... + . .++.
T Consensus 32 ~~~~~~~v~~~~~~~---------~l~~~d~~tG~~~W~~~~~-~~~~----~~~~~~~~~v~v~~~--~---~--~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVASGDG---------NLYALDAKTGKVLWRFDLP-GPIS----GAPVVDGGRVYVGTS--D---G--SLYA 90 (238)
T ss_dssp EEEETTEEEEEETTS---------EEEEEETTTSEEEEEEECS-SCGG----SGEEEETTEEEEEET--T---S--EEEE
T ss_pred EEEeCCEEEEEcCCC---------EEEEEECCCCCEEEEeecc-cccc----ceeeecccccccccc--e---e--eeEe
Confidence 345788888885554 89999987665422 2445 4331 113677788877662 1 2 4555
Q ss_pred eccCCCCCCeEE-EEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 265 MKEYGLTESWTK-LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 265 l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
++....+..|.. ...-+.............++.+++. . ..+ .++.+|+++++...
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g-~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG--T-SSG-KLVALDPKTGKLLW 146 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE--E-TCS-EEEEEETTTTEEEE
T ss_pred cccCCcceeeeeccccccccccccccCceEecCEEEEE--e-ccC-cEEEEecCCCcEEE
Confidence 552223467874 3322222211111111223455555 4 466 49999999998744
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.94 E-value=15 Score=34.12 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=56.0
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 263 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW 263 (355)
+++.+|.+|...... .+.+||..+++ |+. .++ .... ...+..++.+++... + ..+ +
T Consensus 61 p~v~~~~v~v~~~~g---------~v~a~d~~tG~~~W~~-~~~-~~~~----~~p~v~~~~v~v~~~-~----g~l--~ 118 (377)
T TIGR03300 61 PAVAGGKVYAADADG---------TVVALDAETGKRLWRV-DLD-ERLS----GGVGADGGLVFVGTE-K----GEV--I 118 (377)
T ss_pred eEEECCEEEEECCCC---------eEEEEEccCCcEeeee-cCC-CCcc----cceEEcCCEEEEEcC-C----CEE--E
Confidence 678899999877654 79999987554 432 444 3221 123344566654332 2 133 3
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
.++....+..|.... +... ...|+ ..++.+++. . .++ .++.+|+++++..
T Consensus 119 ald~~tG~~~W~~~~--~~~~-~~~p~--v~~~~v~v~--~-~~g-~l~a~d~~tG~~~ 168 (377)
T TIGR03300 119 ALDAEDGKELWRAKL--SSEV-LSPPL--VANGLVVVR--T-NDG-RLTALDAATGERL 168 (377)
T ss_pred EEECCCCcEeeeecc--Ccee-ecCCE--EECCEEEEE--C-CCC-eEEEEEcCCCcee
Confidence 333211234565421 1110 11122 234566666 4 566 4999999887753
No 65
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.76 E-value=28 Score=33.41 Aligned_cols=195 Identities=14% Similarity=0.227 Sum_probs=94.2
Q ss_pred ceEEEEcCCcccEEecCCCCCC--Cce--eEEEEecCCCCCCcEEEE-------------EEcCCCc--eeEeccCCCce
Q 018497 115 SLIYLWNPLIKKYMTLPRPSLN--PRY--LGFGVNSVSGHLDDFKVV-------------YSLRSNS--WKNIAYGFPRS 175 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~--~~~--~~~g~d~~~~~~~~ykvv-------------yss~t~~--W~~~~~~~p~~ 175 (355)
.++.|+|-+|+||. +|..... +.. +||.+| +...-|+ |.+...+ |+.+....|..
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpgcAA~Gfvcd-----GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPGCAAFGFVCD-----GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCchhhcceEec-----CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence 47899999999997 3332221 222 444444 3333333 6666554 55554233321
Q ss_pred e-----eeccccccceeEeCceEEEEEeeec-cCC-------CCCCcEEEEEEcCCc--eeeEe----cCCCCCCCCCCc
Q 018497 176 I-----EINRSHINSSVFLNGSVHWCARFSC-YHD-------NSCPWLIVSFDFAKE--IFQTV----MMPYDLSTDDAD 236 (355)
Q Consensus 176 ~-----~~~~~~~~~~v~~~G~lyw~~~~~~-~~~-------~~~~~~Il~fD~~~~--~~~~i----~lP~~~~~~~~~ 236 (355)
- ....+ -+.++++.|.+++-.. +.+ -.+...|+-+-...+ -|... .+| ..+++..-
T Consensus 131 G~pPCPRlGHS----Fsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P-~pRESHTA 205 (830)
T KOG4152|consen 131 GPPPCPRLGHS----FSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLP-PPRESHTA 205 (830)
T ss_pred CCCCCCccCce----eEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCC-CCccccee
Confidence 1 11111 3456678888765431 000 112233444444333 23321 455 34433222
Q ss_pred eEEEEEC---CeEEEEEecCCCCccEE-EEEEeccCCCCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEE-Ee-----
Q 018497 237 KYLNVFD---GYLCVFATIPNNTFRSY-ELWVMKEYGLTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRG-EC----- 304 (355)
Q Consensus 237 ~~L~~~~---G~L~~v~~~~~~~~~~l-~iW~l~~~~~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~-~~----- 304 (355)
..-++-+ -++++.++..+ .++ ++|.|+-. .-.|.+-..-....+ ..+ .+....+++|+.| +.
T Consensus 206 ViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLH-sa~~IGnKMyvfGGWVPl~~~ 279 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLH-SATTIGNKMYVFGGWVPLVMD 279 (830)
T ss_pred EEEEeccCCcceEEEEccccc---ccccceeEEecc--eeecccccccCCCCCCcccc-cceeecceeEEecceeeeecc
Confidence 2222333 26777776655 344 69999863 467887432222221 111 1112223555541 10
Q ss_pred -----eC--Cce---EEEEEeCCCCeEEEEEE
Q 018497 305 -----RH--GGY---GLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 305 -----~~--~~~---~l~~yd~~t~~~~~v~~ 326 (355)
.+ +++ .+-+.|++|..|+.+..
T Consensus 280 ~~~~~~hekEWkCTssl~clNldt~~W~tl~~ 311 (830)
T KOG4152|consen 280 DVKVATHEKEWKCTSSLACLNLDTMAWETLLM 311 (830)
T ss_pred ccccccccceeeeccceeeeeecchheeeeee
Confidence 01 122 68888999999988854
No 66
>PLN02772 guanylate kinase
Probab=85.88 E-value=5.3 Score=37.24 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=51.6
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe----cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV----MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYE 261 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i----~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~ 261 (355)
.+.++.++|.+++.. -+......+.+||..+.+|..- .-| ..+. .+-.++.-+++|.++..... ..-+
T Consensus 30 av~igdk~yv~GG~~--d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-~~r~--GhSa~v~~~~rilv~~~~~~---~~~~ 101 (398)
T PLN02772 30 SVTIGDKTYVIGGNH--EGNTLSIGVQILDKITNNWVSPIVLGTGP-KPCK--GYSAVVLNKDRILVIKKGSA---PDDS 101 (398)
T ss_pred eEEECCEEEEEcccC--CCccccceEEEEECCCCcEecccccCCCC-CCCC--cceEEEECCceEEEEeCCCC---Cccc
Confidence 789999999998764 1112456899999999999763 333 3332 12344455689999987655 4678
Q ss_pred EEEecc
Q 018497 262 LWVMKE 267 (355)
Q Consensus 262 iW~l~~ 267 (355)
||.|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 999985
No 67
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.86 E-value=1.9 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=18.7
Q ss_pred eeCCcEEEEE-EeeCCc---eEEEEEeCCCCeEEEE
Q 018497 293 TERGKIFIRG-ECRHGG---YGLLVYNPHSDTFKCI 324 (355)
Q Consensus 293 ~~~g~i~~~~-~~~~~~---~~l~~yd~~t~~~~~v 324 (355)
..++.||+.| .. .++ +.++.||+++++|+++
T Consensus 10 ~~~~~i~v~GG~~-~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRD-SSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EE-E-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCC-CCCcccCCEEEEECCCCEEEEC
Confidence 3456777773 22 111 1699999999999988
No 68
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=85.30 E-value=2.1 Score=26.69 Aligned_cols=42 Identities=31% Similarity=0.549 Sum_probs=30.0
Q ss_pred eEEEEECCeEEEEEec--CCCCccEEEEEEeccCCCCCCeEEEEEe
Q 018497 237 KYLNVFDGYLCVFATI--PNNTFRSYELWVMKEYGLTESWTKLYTI 280 (355)
Q Consensus 237 ~~L~~~~G~L~~v~~~--~~~~~~~l~iW~l~~~~~~~~W~~~~~i 280 (355)
...++.+++|+++++. +......-++|+++.. +..|+++..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~--t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE--TNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECC--CCEEeecCCC
Confidence 4567889999999988 3333456678888863 4789886543
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.20 E-value=28 Score=31.23 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeE---EEEEecCCCCccEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYL---CVFATIPNNTFRSYE 261 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L---~~v~~~~~~~~~~l~ 261 (355)
+|-|+|-.-.-+. ..+.|..||+.+..= ..+-.| ... +.-....+.+ .++...++ ..+.
T Consensus 48 avAVs~~~~aSGs--------sDetI~IYDm~k~~qlg~ll~H-ags-----itaL~F~~~~S~shLlS~sdD---G~i~ 110 (362)
T KOG0294|consen 48 ALAVSGPYVASGS--------SDETIHIYDMRKRKQLGILLSH-AGS-----ITALKFYPPLSKSHLLSGSDD---GHII 110 (362)
T ss_pred EEEecceeEeccC--------CCCcEEEEeccchhhhcceecc-ccc-----eEEEEecCCcchhheeeecCC---CcEE
Confidence 6667775333333 358999999876543 333322 211 1222222222 44555544 5899
Q ss_pred EEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 262 LWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 262 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
||..+ +|..+..+....-.+.-+.++..|++-+. ...|+ .+-.+|+.+++.-.+
T Consensus 111 iw~~~------~W~~~~slK~H~~~Vt~lsiHPS~KLALs--Vg~D~-~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 111 IWRVG------SWELLKSLKAHKGQVTDLSIHPSGKLALS--VGGDQ-VLRTWNLVRGRVAFV 164 (362)
T ss_pred EEEcC------CeEEeeeecccccccceeEecCCCceEEE--EcCCc-eeeeehhhcCcccee
Confidence 99855 59888887544323555777777877776 43444 477777777665443
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.41 E-value=0.52 Score=43.56 Aligned_cols=38 Identities=32% Similarity=0.630 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccchhhHhhhCCh
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCKSWNTLLTSK 42 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~ 42 (355)
.-.||.|++..||+-|-.+++.|++.+|+.|+-+..|.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 34899999999999999999999999999999988764
No 71
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.12 E-value=29 Score=30.64 Aligned_cols=121 Identities=13% Similarity=0.204 Sum_probs=71.9
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEe
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVM 265 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l 265 (355)
.+.-||.+|+..... +.|...|+.+..-++++-| +....+....-....|++.+.+.... .+ -..
T Consensus 195 ~atpdGsvwyaslag--------naiaridp~~~~aev~p~P-~~~~~gsRriwsdpig~~wittwg~g----~l--~rf 259 (353)
T COG4257 195 CATPDGSVWYASLAG--------NAIARIDPFAGHAEVVPQP-NALKAGSRRIWSDPIGRAWITTWGTG----SL--HRF 259 (353)
T ss_pred EECCCCcEEEEeccc--------cceEEcccccCCcceecCC-CcccccccccccCccCcEEEeccCCc----ee--eEe
Confidence 345689999986655 6899999999988888888 76433222222333466655533221 22 233
Q ss_pred ccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497 266 KEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 327 (355)
Q Consensus 266 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~ 327 (355)
+- ...+|.. +.++-..-.-..+.+...|.|.+. .-..+ .+..||++|.++..+.+.
T Consensus 260 dP--s~~sW~e-ypLPgs~arpys~rVD~~grVW~s--ea~ag-ai~rfdpeta~ftv~p~p 315 (353)
T COG4257 260 DP--SVTSWIE-YPLPGSKARPYSMRVDRHGRVWLS--EADAG-AIGRFDPETARFTVLPIP 315 (353)
T ss_pred Cc--cccccee-eeCCCCCCCcceeeeccCCcEEee--ccccC-ceeecCcccceEEEecCC
Confidence 32 1245655 344332211223445556677775 31334 699999999999988664
No 72
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=83.71 E-value=4.4 Score=38.48 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=76.0
Q ss_pred EEEEcCCcccEEecCCCCCC-------C---ceeEEEEecCCCCCCcEEEE--------------EEcCCCceeEecc--
Q 018497 117 IYLWNPLIKKYMTLPRPSLN-------P---RYLGFGVNSVSGHLDDFKVV--------------YSLRSNSWKNIAY-- 170 (355)
Q Consensus 117 ~~V~NP~T~~~~~LP~~~~~-------~---~~~~~g~d~~~~~~~~ykvv--------------yss~t~~W~~~~~-- 170 (355)
+..--|.|-.|.++|+-... + +-..+.+++. ++...+. |+-+.+.|..+..
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~---~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t 307 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ---TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT 307 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCC---CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC
Confidence 34446778888888776522 1 1156667766 5544444 9999999998863
Q ss_pred CCCceeeeccccccceeEe--CceEEEEEeeecc---CCCCCCcEEEEEEcCCceeeEecCCCCCCCCC----CceEEEE
Q 018497 171 GFPRSIEINRSHINSSVFL--NGSVHWCARFSCY---HDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDD----ADKYLNV 241 (355)
Q Consensus 171 ~~p~~~~~~~~~~~~~v~~--~G~lyw~~~~~~~---~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~----~~~~L~~ 241 (355)
..|....+.+ .|.- ..+||-++..-.+ ...+.+.-+-.||.+++.|..+..- ...+.+ +.-.+++
T Consensus 308 ~~PG~RsCHR-----MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dGGP~~vfDHqM~V 381 (723)
T KOG2437|consen 308 EGPGARSCHR-----MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADGGPKLVFDHQMCV 381 (723)
T ss_pred CCCcchhhhh-----hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccCCcceeecceeeE
Confidence 3455444443 2332 3378877654321 1235566789999999999999665 443222 2223444
Q ss_pred EC--CeEEEEEec
Q 018497 242 FD--GYLCVFATI 252 (355)
Q Consensus 242 ~~--G~L~~v~~~ 252 (355)
.+ |-|||.++.
T Consensus 382 d~~k~~iyVfGGr 394 (723)
T KOG2437|consen 382 DSEKHMIYVFGGR 394 (723)
T ss_pred ecCcceEEEecCe
Confidence 44 347887764
No 73
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=83.32 E-value=37 Score=31.16 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=65.3
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeE---ecCCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEE
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQT---VMMPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYEL 262 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~---i~lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~i 262 (355)
+|...|....+ .+.|..|+++.+. +.. +.+| .... ...++-. +|+ +|++.... +.+.+
T Consensus 154 dg~~v~v~dlG-------~D~v~~~~~~~~~~~l~~~~~~~~~-~G~G---PRh~~f~pdg~~~Yv~~e~s----~~v~v 218 (345)
T PF10282_consen 154 DGRFVYVPDLG-------ADRVYVYDIDDDTGKLTPVDSIKVP-PGSG---PRHLAFSPDGKYAYVVNELS----NTVSV 218 (345)
T ss_dssp TSSEEEEEETT-------TTEEEEEEE-TTS-TEEEEEEEECS-TTSS---EEEEEE-TTSSEEEEEETTT----TEEEE
T ss_pred CCCEEEEEecC-------CCEEEEEEEeCCCceEEEeeccccc-cCCC---CcEEEEcCCcCEEEEecCCC----CcEEE
Confidence 56555554333 4789999987766 533 3556 3331 2233333 354 55555443 58888
Q ss_pred EEeccCCCCCCeEEEEEecCCCc------eeEeEEEeeCCcEEEEEEeeCCceEEEEEeC--CCCeEEEEEE
Q 018497 263 WVMKEYGLTESWTKLYTIEKPQR------IWWPLGFTERGKIFIRGECRHGGYGLLVYNP--HSDTFKCIGV 326 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~~~------~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~--~t~~~~~v~~ 326 (355)
+.++.. +..++...+++.... ...-+.+..+|+.+++. .+... .|.+|++ ++++++.+..
T Consensus 219 ~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-nr~~~-sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 219 FDYDPS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-NRGSN-SISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEETT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-ECTTT-EEEEEEECTTTTTEEEEEE
T ss_pred Eeeccc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-eccCC-EEEEEEEecCCCceEEEEE
Confidence 888842 246777777654321 23446677788655541 32333 5777776 5678877643
No 74
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=82.98 E-value=58 Score=33.15 Aligned_cols=63 Identities=13% Similarity=0.344 Sum_probs=41.8
Q ss_pred cEEEEEEeccC----CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC-CeEEEE
Q 018497 258 RSYELWVMKEY----GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS-DTFKCI 324 (355)
Q Consensus 258 ~~l~iW~l~~~----~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t-~~~~~v 324 (355)
..+.||++.++ .....|+.+..=.+...-....++..+|.++.+ . .+. .+-.||..+ ++++..
T Consensus 479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~--s-~~~-~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV--S-FDD-TITIWDYDTKNELLCT 546 (792)
T ss_pred CeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE--e-cCC-EEEEecCCChhhhhcc
Confidence 59999999654 234689986554432212334556678888888 6 566 599999999 544443
No 75
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.77 E-value=31 Score=31.25 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=52.2
Q ss_pred cEEEEEEcCC-ceeeEec-CCCCCCCCCCceEEEEE-CCe-EEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497 209 WLIVSFDFAK-EIFQTVM-MPYDLSTDDADKYLNVF-DGY-LCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ 284 (355)
Q Consensus 209 ~~Il~fD~~~-~~~~~i~-lP~~~~~~~~~~~L~~~-~G~-L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 284 (355)
..|-.||+.+ .++..+. ++ ... ....++.. +|+ |++... .. ..+.+|.+++ +..+.....++...
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~-~~~---~~~~l~~spd~~~lyv~~~-~~---~~i~~~~~~~---~g~l~~~~~~~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD-VPG---QVQPMVISPDKRHLYVGVR-PE---FRVLSYRIAD---DGALTFAAESPLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe-cCC---CCccEEECCCCCEEEEEEC-CC---CcEEEEEECC---CCceEEeeeecCCC
Confidence 6789999864 4555552 22 111 11123322 455 555443 33 5788888874 24566666665432
Q ss_pred ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497 285 RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHS 318 (355)
Q Consensus 285 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t 318 (355)
....+++..+|+.++.. ...++ .+.+||+++
T Consensus 81 -~p~~i~~~~~g~~l~v~-~~~~~-~v~v~~~~~ 111 (330)
T PRK11028 81 -SPTHISTDHQGRFLFSA-SYNAN-CVSVSPLDK 111 (330)
T ss_pred -CceEEEECCCCCEEEEE-EcCCC-eEEEEEECC
Confidence 23346667778655541 31244 588898874
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=82.70 E-value=33 Score=30.16 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=60.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
.+.+++.+|-+.... ...+.||..+-+- ..++.| . + ..-|+.-+..|.+-.+.+ + ++.
T Consensus 95 it~~~d~l~qLTWk~--------~~~f~yd~~tl~~~~~~~y~-~---E--GWGLt~dg~~Li~SDGS~-----~--L~~ 153 (264)
T PF05096_consen 95 ITILGDKLYQLTWKE--------GTGFVYDPNTLKKIGTFPYP-G---E--GWGLTSDGKRLIMSDGSS-----R--LYF 153 (264)
T ss_dssp EEEETTEEEEEESSS--------SEEEEEETTTTEEEEEEE-S-S---S----EEEECSSCEEEE-SSS-----E--EEE
T ss_pred EEEECCEEEEEEecC--------CeEEEEccccceEEEEEecC-C---c--ceEEEcCCCEEEEECCcc-----c--eEE
Confidence 568899999999987 7899999975322 333444 2 2 345665555665544432 3 445
Q ss_pred eccCCCCCCeEEEEEecCCCceeEeEEE-----eeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 265 MKEYGLTESWTKLYTIEKPQRIWWPLGF-----TERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 265 l~~~~~~~~W~~~~~i~~~~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
++. .....+.+|..... ..|+.. ..+|.||-- . ...+.++..|++|+++...
T Consensus 154 ~dP----~~f~~~~~i~V~~~-g~pv~~LNELE~i~G~IyAN--V-W~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 154 LDP----ETFKEVRTIQVTDN-GRPVSNLNELEYINGKIYAN--V-WQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp E-T----TT-SEEEEEE-EET-TEE---EEEEEEETTEEEEE--E-TTSSEEEEEETTT-BEEEE
T ss_pred ECC----cccceEEEEEEEEC-CEECCCcEeEEEEcCEEEEE--e-CCCCeEEEEeCCCCeEEEE
Confidence 553 12344444443321 122211 136777776 5 4444699999999998654
No 77
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.28 E-value=23 Score=34.77 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=61.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC--ceeeEe-cCCCCCCCCC-----CceEEEEECCeEEEEEecCCCCc
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK--EIFQTV-MMPYDLSTDD-----ADKYLNVFDGYLCVFATIPNNTF 257 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~--~~~~~i-~lP~~~~~~~-----~~~~L~~~~G~L~~v~~~~~~~~ 257 (355)
+++.+|.+|...... .|.++|..+ +.|+.- ..| ...... ....++..+|++++.....
T Consensus 65 Pvv~~g~vyv~s~~g---------~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---- 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSYS---------RVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALYDGKVFFGTLDA---- 130 (527)
T ss_pred CEEECCEEEEECCCC---------cEEEEECCCCceeeEecCCCC-cccccccccccccccceEECCEEEEEcCCC----
Confidence 889999999976654 799999875 456543 333 221100 0112345567776644322
Q ss_pred cEEEEEEeccCCCCCCeEEEEE-ecCCC-ceeEeEEEeeCCcEEEEEEee-----CCceEEEEEeCCCCeEEEE
Q 018497 258 RSYELWVMKEYGLTESWTKLYT-IEKPQ-RIWWPLGFTERGKIFIRGECR-----HGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~-i~~~~-~~~~~~~~~~~g~i~~~~~~~-----~~~~~l~~yd~~t~~~~~v 324 (355)
.+..++....+..|..... ..... ....|+. .+|.||+. .. .++ .|+.||.+|++...-
T Consensus 131 ---~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~Vivg--~~~~~~~~~G-~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 ---RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGKVITG--ISGGEFGVRG-YVTAYDAKTGKLVWR 196 (527)
T ss_pred ---EEEEEECCCCCEEeecccccccccccccCCcEE--ECCEEEEe--ecccccCCCc-EEEEEECCCCceeEe
Confidence 2445543323455664321 00000 0122332 24566665 21 134 599999999986554
No 78
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.25 E-value=32 Score=29.64 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=58.3
Q ss_pred eeeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCc-eeEEEEecCC-CC-CCc-EEEEEEcCCC----ceeEecc
Q 018497 99 GSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPR-YLGFGVNSVS-GH-LDD-FKVVYSLRSN----SWKNIAY 170 (355)
Q Consensus 99 ~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~-~~~~g~d~~~-~~-~~~-ykvvyss~t~----~W~~~~~ 170 (355)
--.+|--|+..+ .+..+-+|||..+..+.-=......- ..+..+|..+ +. +++ .-.++|-+|+ +||....
T Consensus 25 yN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a 102 (307)
T KOG0316|consen 25 YNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA 102 (307)
T ss_pred EccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc
Confidence 334677787774 67889999999987764322211110 1555566542 11 223 2223788875 6765441
Q ss_pred CCCceeeeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCC
Q 018497 171 GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMP 227 (355)
Q Consensus 171 ~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP 227 (355)
.... ..+.... +|.+.|.+ ...+-++|-.+.++..|+.-
T Consensus 103 qVNt-V~fNees---SVv~Sgsf--------------D~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 103 QVNT-VRFNEES---SVVASGSF--------------DSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred eeeE-EEecCcc---eEEEeccc--------------cceeEEEEcccCCCCccchh
Confidence 2221 2222222 45544422 24677777777777776544
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.06 E-value=49 Score=31.24 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=57.4
Q ss_pred cEEEEEEcCCceeeEecCCCCCCCCC-Cc-eEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497 209 WLIVSFDFAKEIFQTVMMPYDLSTDD-AD-KYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 286 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i~lP~~~~~~~-~~-~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 286 (355)
..+.+||+.+-+.+.+..| ...... +. +.+.-. |...++.+.. ..+.+-..+ ..+|.--..|+- .
T Consensus 280 ky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd-~~fia~~G~~----G~I~lLhak----T~eli~s~KieG---~ 346 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHD-SNFIAIAGNN----GHIHLLHAK----TKELITSFKIEG---V 346 (514)
T ss_pred eEEEEeeccccccccccCC-CCcccchhheeEecCC-CCeEEEcccC----ceEEeehhh----hhhhhheeeecc---E
Confidence 6899999999999999877 555432 11 222222 3332222222 233333333 244555444442 2
Q ss_pred eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497 287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~ 325 (355)
..-+.+..+|+.++. +..+++ |+++|++++.....-
T Consensus 347 v~~~~fsSdsk~l~~--~~~~Ge-V~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLA--SGGTGE-VYVWNLRQNSCLHRF 382 (514)
T ss_pred EeeEEEecCCcEEEE--EcCCce-EEEEecCCcceEEEE
Confidence 444666677755555 425674 999999999765543
No 80
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=80.67 E-value=38 Score=30.65 Aligned_cols=111 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCC
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYG 269 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~ 269 (355)
.+.|||..... ..|+.+|+.+..-+.+..| ... ....+..-+|.|..+.. .+.++..+.
T Consensus 36 ~~~L~w~DI~~--------~~i~r~~~~~g~~~~~~~p-~~~---~~~~~~d~~g~Lv~~~~-------g~~~~~~~~-- 94 (307)
T COG3386 36 RGALLWVDILG--------GRIHRLDPETGKKRVFPSP-GGF---SSGALIDAGGRLIACEH-------GVRLLDPDT-- 94 (307)
T ss_pred CCEEEEEeCCC--------CeEEEecCCcCceEEEECC-CCc---ccceeecCCCeEEEEcc-------ccEEEeccC--
Q ss_pred CCCCeEEEEEecCCCc--eeEeEEEeeCCcEEEEEEeeC---Cce-------EEEEEeCCCCeEEEE
Q 018497 270 LTESWTKLYTIEKPQR--IWWPLGFTERGKIFIRGECRH---GGY-------GLLVYNPHSDTFKCI 324 (355)
Q Consensus 270 ~~~~W~~~~~i~~~~~--~~~~~~~~~~g~i~~~~~~~~---~~~-------~l~~yd~~t~~~~~v 324 (355)
...|++........- ..--..+..+|.++|. ... ... .|+.+|+.+.+.+.+
T Consensus 95 -~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfg--t~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 95 -GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG--DMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred -CceeEEeccccCCCCcCCCCceeEcCCCCEEEe--CCCccccCccccCCcceEEEEcCCCCEEEee
No 81
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.31 E-value=4.1 Score=25.28 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=24.6
Q ss_pred ceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCC
Q 018497 191 GSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLS 231 (355)
Q Consensus 191 G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~ 231 (355)
+.+|..++... ........+.+||+.+.+|+.+ ++| ..+
T Consensus 2 ~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P-~~R 41 (49)
T PF13415_consen 2 NKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLP-PPR 41 (49)
T ss_pred CEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCC-CCc
Confidence 45555554330 0123345689999999999998 666 443
No 82
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.17 E-value=6.7 Score=24.28 Aligned_cols=24 Identities=0% Similarity=0.026 Sum_probs=19.9
Q ss_pred CceEEEEcCCcccEEecCCCCCCC
Q 018497 114 RSLIYLWNPLIKKYMTLPRPSLNP 137 (355)
Q Consensus 114 ~~~~~V~NP~T~~~~~LP~~~~~~ 137 (355)
...++++||.|++|.+++.+|..+
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCc
Confidence 346899999999999998777654
No 83
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.61 E-value=49 Score=30.14 Aligned_cols=110 Identities=10% Similarity=0.153 Sum_probs=67.9
Q ss_pred CcEEEEEEcCCceeeEe---cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497 208 PWLIVSFDFAKEIFQTV---MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ 284 (355)
Q Consensus 208 ~~~Il~fD~~~~~~~~i---~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 284 (355)
.+.|..||++.+..+.. .++ .... ..-..---+|+++++...-. .++.+|..+.. ..+-..+.++...+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~-~G~G--PRHi~FHpn~k~aY~v~EL~---stV~v~~y~~~--~g~~~~lQ~i~tlP 237 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVK-PGAG--PRHIVFHPNGKYAYLVNELN---STVDVLEYNPA--VGKFEELQTIDTLP 237 (346)
T ss_pred CceEEEEEcccCccccccccccC-CCCC--cceEEEcCCCcEEEEEeccC---CEEEEEEEcCC--CceEEEeeeeccCc
Confidence 57788888887766554 233 2221 11122234588877666555 69999999874 24566666665332
Q ss_pred c------eeEeEEEeeCCcEEEEEEeeCCce--EEEEEeCCCCeEEEEEEe
Q 018497 285 R------IWWPLGFTERGKIFIRGECRHGGY--GLLVYNPHSDTFKCIGVH 327 (355)
Q Consensus 285 ~------~~~~~~~~~~g~i~~~~~~~~~~~--~l~~yd~~t~~~~~v~~~ 327 (355)
. +...+.++.+|+.++. +-+..+ .+|..|+.+++++-+...
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYa--sNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYA--SNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEE--ecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 2 4556777889977766 412222 677779999998887664
No 84
>smart00612 Kelch Kelch domain.
Probab=79.25 E-value=1.6 Score=26.39 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=9.8
Q ss_pred eEEEEcCCcccEEecCCCC
Q 018497 116 LIYLWNPLIKKYMTLPRPS 134 (355)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~ 134 (355)
.+.++||.+++|..+|+++
T Consensus 16 ~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 16 SVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eEEEECCCCCeEccCCCCC
Confidence 3445555555555555444
No 85
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=79.16 E-value=6.6 Score=29.13 Aligned_cols=37 Identities=8% Similarity=0.342 Sum_probs=27.3
Q ss_pred ceEEEEcCCcc-cEEecCCCCCCCceeEEEEecCCCCCCcEEEE
Q 018497 115 SLIYLWNPLIK-KYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV 157 (355)
Q Consensus 115 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv 157 (355)
..++++||.|+ .|+..-+ ....+.+.+|+. .+.|+||
T Consensus 11 A~V~~yd~~tKk~WvPs~~---~~~~V~~y~~~~---~ntfRIi 48 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASK---HAVTVSYFYDST---RNVYRII 48 (111)
T ss_pred eEEEEECCCCcceeEeCCC---CceeEEEEecCC---CcEEEEE
Confidence 46889999986 7874432 222477888998 8899988
No 86
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=79.14 E-value=26 Score=32.83 Aligned_cols=136 Identities=14% Similarity=0.213 Sum_probs=74.3
Q ss_pred eeeCceEEEeecCC--CCceEEEEcCCcccEEecCCCCCCC----ceeEE----EEecCCCCCCcEEEEEEcCCCceeEe
Q 018497 99 GSCNGVLCFCSNGS--DRSLIYLWNPLIKKYMTLPRPSLNP----RYLGF----GVNSVSGHLDDFKVVYSLRSNSWKNI 168 (355)
Q Consensus 99 ~s~~GLl~l~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~----~~~~~----g~d~~~~~~~~ykvvyss~t~~W~~~ 168 (355)
+--+.||++...+. ..-+++|+|..|++..++....... ...|+ ||-=. ++++|++ +-...
T Consensus 235 A~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLq---tGe~K~F-d~~~~----- 305 (448)
T PF12458_consen 235 ARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQ---TGEYKTF-DTDMD----- 305 (448)
T ss_pred eecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEec---cCCceee-cccCC-----
Confidence 33456777776542 2348999999999999887654331 11222 23223 5566653 22211
Q ss_pred ccCCCceeeeccccccceeEeCc--eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeE
Q 018497 169 AYGFPRSIEINRSHINSSVFLNG--SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYL 246 (355)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~v~~~G--~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L 246 (355)
...+.+. ..+=|| .||.+-... .....++.|++...+.. -|+ .+ ...-.--+|+|
T Consensus 306 ------~l~F~r~----vrSPNGEDvLYvF~~~~-----~g~~~Ll~YN~I~k~v~---tPi-~c----hG~alf~DG~l 362 (448)
T PF12458_consen 306 ------GLEFERK----VRSPNGEDVLYVFYARE-----EGRYLLLPYNLIRKEVA---TPI-IC----HGYALFEDGRL 362 (448)
T ss_pred ------CceEEEE----ecCCCCceEEEEEEECC-----CCcEEEEechhhhhhhc---CCe-ec----cceeEecCCEE
Confidence 1111110 112233 677764432 45678899998776553 341 11 22333446999
Q ss_pred EEEEecCC--CCccEEEEEEec
Q 018497 247 CVFATIPN--NTFRSYELWVMK 266 (355)
Q Consensus 247 ~~v~~~~~--~~~~~l~iW~l~ 266 (355)
+++..... ....-++||.--
T Consensus 363 ~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 363 VYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred EEEecCCCCcceeccceeecCC
Confidence 99887622 234567888764
No 87
>PTZ00420 coronin; Provisional
Probab=77.92 E-value=77 Score=31.46 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=63.0
Q ss_pred eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCC--ceEEEE--ECCeEEEEEecCCCCccEEEEEE
Q 018497 189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDA--DKYLNV--FDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~--~~~L~~--~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
-+|.+...+..+ ..|..+|+.+++-.. .++ .+..... ...+.. .++...+..+.++.....+.||-
T Consensus 177 pdG~lLat~s~D--------~~IrIwD~Rsg~~i~-tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 177 IKGNLLSGTCVG--------KHMHIIDPRKQEIAS-SFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred CCCCEEEEEecC--------CEEEEEECCCCcEEE-EEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 367766544433 479999998775422 222 2211101 111111 23444444443332234799999
Q ss_pred eccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 265 MKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 265 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
+..-+ .=.....++.......|..-..+|.+|+. .+.++ .+.+|+..++.+..+
T Consensus 247 lr~~~---~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~-tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 247 LKNTT---SALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDG-NCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCC---CceEEEEecCCccceEEeeeCCCCCEEEE--EECCC-eEEEEEccCCcEEee
Confidence 88532 12223333332212334444455778887 43566 599999998876666
No 88
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.45 E-value=58 Score=30.16 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=65.3
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce--eeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI--FQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELW 263 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~--~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW 263 (355)
++..+|++|.....+ .|.++|.++.+ |+.-... ... .....+...+|+|++-.... .++
T Consensus 64 ~~~~dg~v~~~~~~G---------~i~A~d~~~g~~~W~~~~~~-~~~--~~~~~~~~~~G~i~~g~~~g-------~~y 124 (370)
T COG1520 64 PADGDGTVYVGTRDG---------NIFALNPDTGLVKWSYPLLG-AVA--QLSGPILGSDGKIYVGSWDG-------KLY 124 (370)
T ss_pred cEeeCCeEEEecCCC---------cEEEEeCCCCcEEecccCcC-cce--eccCceEEeCCeEEEecccc-------eEE
Confidence 389999999985554 79999998776 6543221 000 01222333378865544322 567
Q ss_pred EeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 264 VMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 264 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
.++....+..|.....-. ..+..+ .+..++.|++. . .++ .++..|.+|++.+..
T Consensus 125 ~ld~~~G~~~W~~~~~~~--~~~~~~-~v~~~~~v~~~--s-~~g-~~~al~~~tG~~~W~ 178 (370)
T COG1520 125 ALDASTGTLVWSRNVGGS--PYYASP-PVVGDGTVYVG--T-DDG-HLYALNADTGTLKWT 178 (370)
T ss_pred EEECCCCcEEEEEecCCC--eEEecC-cEEcCcEEEEe--c-CCC-eEEEEEccCCcEEEE
Confidence 777632345677644331 101222 23345667776 5 456 499999998876554
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=75.31 E-value=75 Score=30.02 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.1
Q ss_pred CeEEEeeeCceEEEeecCCCCceEEEEcCCcccEEec
Q 018497 94 DLDVVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTL 130 (355)
Q Consensus 94 ~~~~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~L 130 (355)
...+..|++|-.+.... .+..+.||++-|.+.+..
T Consensus 205 il~~avS~Dgkylatgg--~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGG--RDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred eEEEEEcCCCcEEEecC--CCceEEEecCcccchhhc
Confidence 45567889999888774 567778999999998876
No 90
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.19 E-value=64 Score=29.15 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=54.8
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCce-e-eEec-CCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEec
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-F-QTVM-MPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMK 266 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~-~-~~i~-lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~ 266 (355)
+|...+.+... ...|.+||+.++. . ..+. ++ .... .......-+|+..++..... ..+.||.++
T Consensus 90 ~g~~l~v~~~~-------~~~v~v~~~~~~g~~~~~~~~~~-~~~~--~~~~~~~p~g~~l~v~~~~~---~~v~v~d~~ 156 (330)
T PRK11028 90 QGRFLFSASYN-------ANCVSVSPLDKDGIPVAPIQIIE-GLEG--CHSANIDPDNRTLWVPCLKE---DRIRLFTLS 156 (330)
T ss_pred CCCEEEEEEcC-------CCeEEEEEECCCCCCCCceeecc-CCCc--ccEeEeCCCCCEEEEeeCCC---CEEEEEEEC
Confidence 57644444332 3688899986431 1 1221 12 1110 11112233455544444443 589999987
Q ss_pred cCCCCCCeEE----EEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCC--CCeEEEE
Q 018497 267 EYGLTESWTK----LYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPH--SDTFKCI 324 (355)
Q Consensus 267 ~~~~~~~W~~----~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~--t~~~~~v 324 (355)
..+ .-.. ...++... ..+-+.++.+|+.+++. ...++ .+.+||.+ +++++.+
T Consensus 157 ~~g---~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~-~~~~~-~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 157 DDG---HLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCV-NELNS-SVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCC---cccccCCCceecCCCC-CCceEEECCCCCEEEEE-ecCCC-EEEEEEEeCCCCCEEEE
Confidence 522 1111 11222111 12336667888655551 31234 58888886 4565544
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.17 E-value=79 Score=30.21 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=87.4
Q ss_pred CChHHHHHHHhcCCCCCCcEEEeecCCCCceeeeccCCcccccCC--CCCCCC-CCC-------CeEEEeeeCce-EEEe
Q 018497 40 TSKTFVEIHLNQSMRNPRPLLFRHGISPSYLGFYSTKCKEFEDLC--DPPFRT-QLA-------DLDVVGSCNGV-LCFC 108 (355)
Q Consensus 40 ~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~-~~~-------~~~~~~s~~GL-l~l~ 108 (355)
....|...+.++....--.++|+....- .+|+|...+...+. +|.... ... ...-.+-.+|= +.+.
T Consensus 262 rHTnFtdYY~R~~nsDGkrIvFq~~GdI---ylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V 338 (668)
T COG4946 262 RHTNFTDYYPRNANSDGKRIVFQNAGDI---YLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV 338 (668)
T ss_pred hcCCchhccccccCCCCcEEEEecCCcE---EEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE
Confidence 3445555555555444445777763333 47888776655443 343321 100 01113444454 3333
Q ss_pred ecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCC----CCCCcEEEEEEcCCCceeEeccCCCceeeecccccc
Q 018497 109 SNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVS----GHLDDFKVVYSLRSNSWKNIAYGFPRSIEINRSHIN 184 (355)
Q Consensus 109 ~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~----~~~~~ykvvyss~t~~W~~~~~~~p~~~~~~~~~~~ 184 (355)
. .++.+|.||--+-.++++....- +|..++.|+.. ...++.-.||+.+++.=+.+. .+.+.... .
T Consensus 339 S----RGkaFi~~~~~~~~iqv~~~~~V-rY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~a--v-- 407 (668)
T COG4946 339 S----RGKAFIMRPWDGYSIQVGKKGGV-RYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEA--V-- 407 (668)
T ss_pred e----cCcEEEECCCCCeeEEcCCCCce-EEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceEE--E--
Confidence 3 46788899999998888876553 23333333220 004455555999998877666 23322211 1
Q ss_pred ceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe
Q 018497 185 SSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV 224 (355)
Q Consensus 185 ~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i 224 (355)
.+.-+|+.-.++.++ ..|+++|++++.-+.|
T Consensus 408 -~vs~dGK~~vvaNdr--------~el~vididngnv~~i 438 (668)
T COG4946 408 -KVSPDGKKVVVANDR--------FELWVIDIDNGNVRLI 438 (668)
T ss_pred -EEcCCCcEEEEEcCc--------eEEEEEEecCCCeeEe
Confidence 556677766665554 4666777766665554
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=74.90 E-value=59 Score=28.62 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=66.3
Q ss_pred eCceEEEEEeeeccCCCCCCcEEEEEEcCCceee-EecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEecc
Q 018497 189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQ-TVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267 (355)
Q Consensus 189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~-~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~ 267 (355)
-+|.+|=-++.. .+..|..+|+.+++.. ..++| ... +.--++..+++|+..+..++ ..-++-.+
T Consensus 54 ~~g~LyESTG~y------G~S~l~~~d~~tg~~~~~~~l~-~~~---FgEGit~~~d~l~qLTWk~~----~~f~yd~~- 118 (264)
T PF05096_consen 54 DDGTLYESTGLY------GQSSLRKVDLETGKVLQSVPLP-PRY---FGEGITILGDKLYQLTWKEG----TGFVYDPN- 118 (264)
T ss_dssp ETTEEEEEECST------TEEEEEEEETTTSSEEEEEE-T-TT-----EEEEEEETTEEEEEESSSS----EEEEEETT-
T ss_pred CCCEEEEeCCCC------CcEEEEEEECCCCcEEEEEECC-ccc---cceeEEEECCEEEEEEecCC----eEEEEccc-
Confidence 467777655443 4678999999998775 55898 543 34467888999999998775 54455443
Q ss_pred CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe-EEEEEEe
Q 018497 268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT-FKCIGVH 327 (355)
Q Consensus 268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~-~~~v~~~ 327 (355)
...++.+++....- =|++.+|+-++. + ++...+...|+++=+ .+.|.+.
T Consensus 119 -----tl~~~~~~~y~~EG---WGLt~dg~~Li~--S-DGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 119 -----TLKKIGTFPYPGEG---WGLTSDGKRLIM--S-DGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp -----TTEEEEEEE-SSS-----EEEECSSCEEE--E--SSSEEEEE-TTT-SEEEEEE-E
T ss_pred -----cceEEEEEecCCcc---eEEEcCCCEEEE--E-CCccceEEECCcccceEEEEEEE
Confidence 34555566554321 223355644444 3 333369999998754 3555543
No 93
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.61 E-value=70 Score=29.33 Aligned_cols=120 Identities=14% Similarity=0.257 Sum_probs=66.7
Q ss_pred Cc-eEEEEEeeeccCCCCCCcEEEEEEcC--CceeeEe----cCCCCCCCCC-CceEEEEE-CCeEEEEEecCCCCccEE
Q 018497 190 NG-SVHWCARFSCYHDNSCPWLIVSFDFA--KEIFQTV----MMPYDLSTDD-ADKYLNVF-DGYLCVFATIPNNTFRSY 260 (355)
Q Consensus 190 ~G-~lyw~~~~~~~~~~~~~~~Il~fD~~--~~~~~~i----~lP~~~~~~~-~~~~L~~~-~G~L~~v~~~~~~~~~~l 260 (355)
+| .+|.+.... ..|.+|+.. +.+++.+ .+| ...... ....+... +|+..++..... +.+
T Consensus 202 dg~~~Yv~~e~s--------~~v~v~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~ispdg~~lyvsnr~~---~sI 269 (345)
T PF10282_consen 202 DGKYAYVVNELS--------NTVSVFDYDPSDGSLTEIQTISTLP-EGFTGENAPAEIAISPDGRFLYVSNRGS---NSI 269 (345)
T ss_dssp TSSEEEEEETTT--------TEEEEEEEETTTTEEEEEEEEESCE-TTSCSSSSEEEEEE-TTSSEEEEEECTT---TEE
T ss_pred CcCEEEEecCCC--------CcEEEEeecccCCceeEEEEeeecc-ccccccCCceeEEEecCCCEEEEEeccC---CEE
Confidence 55 456655443 577777766 6666554 354 332221 33445544 465544444443 589
Q ss_pred EEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEE--eCCCCeEEEEE
Q 018497 261 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVY--NPHSDTFKCIG 325 (355)
Q Consensus 261 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~y--d~~t~~~~~v~ 325 (355)
.++.++... ..-+.+..++......+-+.+..+|+.+++. ....+ .+.+| |.++++++.+.
T Consensus 270 ~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~-~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 270 SVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSN-TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTT-EEEEEEEETTTTEEEEEE
T ss_pred EEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCC-eEEEEEEeCCCCcEEEec
Confidence 999996532 3455656665433234556677788655551 31333 35555 77899998875
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.59 E-value=1.3e+02 Score=32.47 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=60.8
Q ss_pred Cce-EEEEEeeeccCCCCCCcEEEEEEcCCceeeEec-----CCCCCC---C--CC--------CceEE-EEECCeEEEE
Q 018497 190 NGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM-----MPYDLS---T--DD--------ADKYL-NVFDGYLCVF 249 (355)
Q Consensus 190 ~G~-lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~-----lP~~~~---~--~~--------~~~~L-~~~~G~L~~v 249 (355)
+|. +|...... ..|..||+.+.....+- .| ... . ++ ....+ ...+|.|+++
T Consensus 750 dG~~LYVADs~n--------~~Irv~D~~tg~~~~~~gg~~~~~-~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 750 DLKELYIADSES--------SSIRALDLKTGGSRLLAGGDPTFS-DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CCCEEEEEECCC--------CeEEEEECCCCcEEEEEecccccC-cccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 454 88776554 68999999876543321 11 100 0 00 11122 3345888887
Q ss_pred EecCCCCccEEEEEEeccCCCCCCeEEEEEecC---------CCceeEe--EEEeeCCcEEEEEEeeCCceEEEEEeCCC
Q 018497 250 ATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK---------PQRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHS 318 (355)
Q Consensus 250 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---------~~~~~~~--~~~~~~g~i~~~~~~~~~~~~l~~yd~~t 318 (355)
.... +++.+|..+. ........... ......| +++..+|.+|+. ...++ .+..+|+++
T Consensus 821 Ds~N----~rIrviD~~t----g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn-~Irvid~~~ 889 (1057)
T PLN02919 821 DSYN----HKIKKLDPAT----KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNS-LIRYLDLNK 889 (1057)
T ss_pred ECCC----CEEEEEECCC----CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCC-EEEEEECCC
Confidence 7654 4888887653 11111111100 0001233 556678899888 53444 599999999
Q ss_pred CeE
Q 018497 319 DTF 321 (355)
Q Consensus 319 ~~~ 321 (355)
++.
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 875
No 95
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=72.40 E-value=16 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=28.1
Q ss_pred ceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE
Q 018497 115 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV 157 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv 157 (355)
..+.+.||.|+.|...-+.+.....+.+.+++. .+.|+|+
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~---~~~yrIv 48 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR---NNTFRVV 48 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC---CCEEEEE
Confidence 357889999999765433222333477778887 8899998
No 96
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.36 E-value=65 Score=33.25 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=23.7
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC--ceeeE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK--EIFQT 223 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~--~~~~~ 223 (355)
+++++|++|...... .++++|..+ +.|+.
T Consensus 190 Plvvgg~lYv~t~~~---------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 190 PLKVGDTLYLCTPHN---------KVIALDAATGKEKWKF 220 (764)
T ss_pred CEEECCEEEEECCCC---------eEEEEECCCCcEEEEE
Confidence 899999999987765 899999874 46665
No 97
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.37 E-value=11 Score=27.15 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=20.6
Q ss_pred EEEeeC-CcEEEEEEe---------------eCCceEEEEEeCCCCeEEEE
Q 018497 290 LGFTER-GKIFIRGEC---------------RHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 290 ~~~~~~-g~i~~~~~~---------------~~~~~~l~~yd~~t~~~~~v 324 (355)
+.+..+ |.|||...+ +..+ .++.||++|++.+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~G-Rll~ydp~t~~~~vl 52 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTG-RLLRYDPSTKETTVL 52 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---E-EEEEEETTTTEEEEE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCc-CEEEEECCCCeEEEe
Confidence 345566 788888211 1234 699999999999877
No 98
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.19 E-value=1.6e+02 Score=31.90 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=102.5
Q ss_pred EEeeeCceEEEeecCCCCceEEEEcCCcccEEecCCC-CCC-----------CceeEEEEecCCCCCCcEEEE-------
Q 018497 97 VVGSCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRP-SLN-----------PRYLGFGVNSVSGHLDDFKVV------- 157 (355)
Q Consensus 97 ~~~s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~-~~~-----------~~~~~~g~d~~~~~~~~ykvv------- 157 (355)
.++..+|.|.+.+. ...++.++++..+....+... ... ....++.+|+. .+...|.
T Consensus 574 avd~~~g~lyVaDs--~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~---gn~LYVaDt~n~~I 648 (1057)
T PLN02919 574 AIDLLNNRLFISDS--NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK---KNLLYVADTENHAL 648 (1057)
T ss_pred EEECCCCeEEEEEC--CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC---CCEEEEEeCCCceE
Confidence 35556888877774 678899999876555455431 110 01167777765 3332222
Q ss_pred --EEcCCCceeEeccC-C-----Cce-----eeeccccccceeEe---CceEEEEEeeeccCCCCCCcEEEEEEcCCcee
Q 018497 158 --YSLRSNSWKNIAYG-F-----PRS-----IEINRSHINSSVFL---NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF 221 (355)
Q Consensus 158 --yss~t~~W~~~~~~-~-----p~~-----~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~ 221 (355)
++..++.=+.+... . ... ....... ++.+ +|.+|+..... +.|..+|..+...
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~---gVa~dp~~g~LyVad~~~--------~~I~v~d~~~g~v 717 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW---DVCFEPVNEKVYIAMAGQ--------HQIWEYNISDGVT 717 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe---EEEEecCCCeEEEEECCC--------CeEEEEECCCCeE
Confidence 44444322222100 0 000 0001111 3443 67888876554 6899999988766
Q ss_pred eEecCCCCC---C--------CCCCceEEEEE-CC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEE---------EEE
Q 018497 222 QTVMMPYDL---S--------TDDADKYLNVF-DG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTK---------LYT 279 (355)
Q Consensus 222 ~~i~lP~~~---~--------~~~~~~~L~~~-~G-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~---------~~~ 279 (355)
..+.-. .. . .......++.. +| .|+++.... +.+.+|-++..+ ..+.- ...
T Consensus 718 ~~~~G~-G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n----~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 718 RVFSGD-GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES----SSIRALDLKTGG--SRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred EEEecC-CccccCCCCccccccccCccEEEEeCCCCEEEEEECCC----CeEEEEECCCCc--EEEEEecccccCccccc
Confidence 544110 00 0 00011123333 34 588776654 477777766421 11110 000
Q ss_pred ecCC------CceeEe--EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497 280 IEKP------QRIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 280 i~~~------~~~~~~--~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~ 325 (355)
+... .....| +++..+|.||+. ...++ ++..||++++.+..+.
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA--Ds~N~-rIrviD~~tg~v~tia 841 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAKDGQIYVA--DSYNH-KIKKLDPATKRVTTLA 841 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeCCCcEEEE--ECCCC-EEEEEECCCCeEEEEe
Confidence 0000 001223 445677889888 53444 6999999999887663
No 99
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=70.92 E-value=99 Score=29.90 Aligned_cols=101 Identities=15% Similarity=0.303 Sum_probs=62.2
Q ss_pred EEcCCCceeEecc----CCCceeeeccccccceeEeCceEEEEEeeeccCC------C-----CCCcEEEEEEcCCceee
Q 018497 158 YSLRSNSWKNIAY----GFPRSIEINRSHINSSVFLNGSVHWCARFSCYHD------N-----SCPWLIVSFDFAKEIFQ 222 (355)
Q Consensus 158 yss~t~~W~~~~~----~~p~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~------~-----~~~~~Il~fD~~~~~~~ 222 (355)
.|++|=+|.+... .+|.+.. . ++.+++++|.+++--...+ . .-...+-++++++..|.
T Consensus 235 Ldl~Tl~W~kp~~~G~~PlPRSLH---s----a~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 235 LDLDTLTWNKPSLSGVAPLPRSLH---S----ATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred EecceeecccccccCCCCCCcccc---c----ceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 7888889976542 2233322 1 7889999998876543210 0 11245889999999998
Q ss_pred EecCCCCCCCCC------CceEEEEECCeEEEEEecCC------CCccEEEEEEecc
Q 018497 223 TVMMPYDLSTDD------ADKYLNVFDGYLCVFATIPN------NTFRSYELWVMKE 267 (355)
Q Consensus 223 ~i~lP~~~~~~~------~~~~L~~~~G~L~~v~~~~~------~~~~~l~iW~l~~ 267 (355)
.+.+- ..+++ ..-+-+..+.+||+..+.++ +....-++|-|+-
T Consensus 308 tl~~d--~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 308 TLLMD--TLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eeeec--cccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 87432 22222 23355677789999888764 1233456777763
No 100
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=67.92 E-value=8.5 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=18.4
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAK 218 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~ 218 (355)
+++.+|.+|....++ .+.+||.++
T Consensus 17 ~~v~~g~vyv~~~dg---------~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDG---------NLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTS---------EEEEEETT-
T ss_pred CEEECCEEEEEcCCC---------EEEEEeCCC
Confidence 788899999988776 899999875
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=67.70 E-value=79 Score=28.29 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=43.9
Q ss_pred CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 244 GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 244 G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
+.|..++.-+ +++++|++++.+.-.. .-+..++-+. -.++..++|.-+|.+ . -++ .+-.||+.+++...
T Consensus 40 ~~~~~A~SWD----~tVR~wevq~~g~~~~-ka~~~~~~Pv---L~v~WsddgskVf~g-~-~Dk-~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 40 DNLLAAGSWD----GTVRIWEVQNSGQLVP-KAQQSHDGPV---LDVCWSDDGSKVFSG-G-CDK-QAKLWDLASGQVSQ 108 (347)
T ss_pred CceEEecccC----CceEEEEEecCCcccc-hhhhccCCCe---EEEEEccCCceEEee-c-cCC-ceEEEEccCCCeee
Confidence 4444455555 4999999998532111 1122333222 123444667545541 3 566 49999999999999
Q ss_pred EEEecC
Q 018497 324 IGVHLP 329 (355)
Q Consensus 324 v~~~~~ 329 (355)
|.....
T Consensus 109 v~~Hd~ 114 (347)
T KOG0647|consen 109 VAAHDA 114 (347)
T ss_pred eeeccc
Confidence 976543
No 102
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.93 E-value=1.2e+02 Score=29.04 Aligned_cols=115 Identities=12% Similarity=0.201 Sum_probs=62.8
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELW 263 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW 263 (355)
.+..+|..-+.+... ..|..+++.+.+-... .++ .+.. ....+. ..+|+ +++....+ .+++||
T Consensus 166 ~fs~~g~~l~~~~~~--------~~i~~~~~~~~~~~~~~~l~-~h~~--~v~~~~fs~d~~-~l~s~s~D---~tiriw 230 (456)
T KOG0266|consen 166 DFSPDGRALAAASSD--------GLIRIWKLEGIKSNLLRELS-GHTR--GVSDVAFSPDGS-YLLSGSDD---KTLRIW 230 (456)
T ss_pred EEcCCCCeEEEccCC--------CcEEEeecccccchhhcccc-cccc--ceeeeEECCCCc-EEEEecCC---ceEEEe
Confidence 445677764433332 4667777744442222 222 2111 112233 33355 56666555 699999
Q ss_pred EeccCCCCCCeEEEEEec-CCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 264 VMKEYGLTESWTKLYTIE-KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 264 ~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
.+++.+ ..+.++. ... ....+++...|++++. ...|+ .+.++|.++.+....
T Consensus 231 d~~~~~-----~~~~~l~gH~~-~v~~~~f~p~g~~i~S--gs~D~-tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 231 DLKDDG-----RNLKTLKGHST-YVTSVAFSPDGNLLVS--GSDDG-TVRIWDVRTGECVRK 283 (456)
T ss_pred eccCCC-----eEEEEecCCCC-ceEEEEecCCCCEEEE--ecCCC-cEEEEeccCCeEEEe
Confidence 995421 2233333 222 4566777788877776 43566 599999999665443
No 103
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.80 E-value=19 Score=19.70 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=18.4
Q ss_pred eCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 294 ERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 294 ~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.+|.+|+. . .++ .++.+|.++++...
T Consensus 5 ~~~~v~~~--~-~~g-~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVG--S-TDG-TLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEE--c-CCC-EEEEEEcccCcEEE
Confidence 35566666 4 566 49999999887654
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.31 E-value=1.7e+02 Score=30.38 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=38.1
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
.|..+|..-..+.++ ..|-..++.+..-...--+ ... ....|. .-+|.+..+...++ .+.||.
T Consensus 103 ~v~g~g~~iaagsdD--------~~vK~~~~~D~s~~~~lrg-h~a---pVl~l~~~p~~~fLAvss~dG----~v~iw~ 166 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDD--------TAVKLLNLDDSSQEKVLRG-HDA---PVLQLSYDPKGNFLAVSSCDG----KVQIWD 166 (933)
T ss_pred EEecCCcEEEeecCc--------eeEEEEeccccchheeecc-cCC---ceeeeeEcCCCCEEEEEecCc----eEEEEE
Confidence 445555565555554 5677777665544333211 111 011111 22355555555553 889999
Q ss_pred eccCCCCCCeEEE
Q 018497 265 MKEYGLTESWTKL 277 (355)
Q Consensus 265 l~~~~~~~~W~~~ 277 (355)
+++......|..+
T Consensus 167 ~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 167 LQDGILSKTLTGV 179 (933)
T ss_pred cccchhhhhcccC
Confidence 9875333445543
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=65.96 E-value=89 Score=27.09 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=53.9
Q ss_pred eCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEEEec
Q 018497 189 LNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELWVMK 266 (355)
Q Consensus 189 ~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~ 266 (355)
-+|.+.+.+... ...+..+|..+.+... +..+ .. ...+. .-+|+..++..... ..+.+|-++
T Consensus 124 ~dg~~l~~~~~~-------~~~~~~~d~~~~~~~~~~~~~--~~----~~~~~~s~dg~~l~~~~~~~---~~v~i~d~~ 187 (300)
T TIGR03866 124 PDGKIVVNTSET-------TNMAHFIDTKTYEIVDNVLVD--QR----PRFAEFTADGKELWVSSEIG---GTVSVIDVA 187 (300)
T ss_pred CCCCEEEEEecC-------CCeEEEEeCCCCeEEEEEEcC--CC----ccEEEECCCCCEEEEEcCCC---CEEEEEEcC
Confidence 467666655432 2356677887655432 2222 11 11122 23465544444333 488999887
Q ss_pred cCCCCCCeEEEEEecCCC---ceeEe--EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 267 EYGLTESWTKLYTIEKPQ---RIWWP--LGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 267 ~~~~~~~W~~~~~i~~~~---~~~~~--~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.. +-.......... ....+ +.+..+|+.++.. ...+. .+.+||.++.+...
T Consensus 188 ~~----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-~~~~~-~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 188 TR----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-LGPAN-RVAVVDAKTYEVLD 243 (300)
T ss_pred cc----eeeeeeeecccccccccCCccceEECCCCCEEEEE-cCCCC-eEEEEECCCCcEEE
Confidence 42 111111111110 01122 4456677554331 31234 59999999877654
No 106
>PTZ00421 coronin; Provisional
Probab=65.85 E-value=1.4e+02 Score=29.16 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=38.8
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
.+.+.+..+ ..+.||-++.. .....+.........+.+..+|.+++. ...++ .+.+||+++++.
T Consensus 139 ~iLaSgs~D----gtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG~lLat--gs~Dg-~IrIwD~rsg~~ 202 (493)
T PTZ00421 139 NVLASAGAD----MVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDGSLLCT--TSKDK-KLNIIDPRDGTI 202 (493)
T ss_pred CEEEEEeCC----CEEEEEECCCC------eEEEEEcCCCCceEEEEEECCCCEEEE--ecCCC-EEEEEECCCCcE
Confidence 454445544 48999998752 223344322213445666677877776 43566 599999998764
No 107
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.96 E-value=19 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=22.1
Q ss_pred eEeC-ceEEEEEeeecc---------CCCCCCcEEEEEEcCCceeeEe
Q 018497 187 VFLN-GSVHWCARFSCY---------HDNSCPWLIVSFDFAKEIFQTV 224 (355)
Q Consensus 187 v~~~-G~lyw~~~~~~~---------~~~~~~~~Il~fD~~~~~~~~i 224 (355)
|.-+ |.+|+-.....+ .+......++.||+.+++.+.+
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe
Confidence 3345 888887665421 1245567899999999999776
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=62.47 E-value=31 Score=32.52 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=44.7
Q ss_pred eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 245 YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 245 ~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.|.++.+.++ .++|..++..- . .++..|.+..+-.....+..+|. .++. . .-.+.++.||+++.++.+
T Consensus 226 plllvaG~d~----~lrifqvDGk~--N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~--s-~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 226 PLLLVAGLDG----TLRIFQVDGKV--N--PKLQSIHLEKFPIQKAEFAPNGHSVIFT--S-GRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ceEEEecCCC----cEEEEEecCcc--C--hhheeeeeccCccceeeecCCCceEEEe--c-ccceEEEEeecccccccc
Confidence 4556666554 88888887522 1 25555655443233455666785 6666 4 233379999999999998
Q ss_pred EEE
Q 018497 324 IGV 326 (355)
Q Consensus 324 v~~ 326 (355)
+.-
T Consensus 295 ~~~ 297 (514)
T KOG2055|consen 295 LKP 297 (514)
T ss_pred ccC
Confidence 844
No 109
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.73 E-value=1.4e+02 Score=27.72 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=114.9
Q ss_pred eeeeccCC-cccccCCCCCCCC---CCCCeEEEeeeCce-EEEeecCCCCceEEEEcCCcccEEe-cCCCCCCCce----
Q 018497 70 LGFYSTKC-KEFEDLCDPPFRT---QLADLDVVGSCNGV-LCFCSNGSDRSLIYLWNPLIKKYMT-LPRPSLNPRY---- 139 (355)
Q Consensus 70 ~~~~~~~~-~~~~~~~~p~~~~---~~~~~~~~~s~~GL-l~l~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~---- 139 (355)
..+|+... ....+++.|..+. ......+.-+.+|- |++... .....+.|.|-.+++... +|.+....-|
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 44566443 3344555553321 22233455566665 444442 246789999999998875 6654432111
Q ss_pred ---eEEEEecCCCCCCcEEEEEEcCCCceeEeccCCCc--e-eeeccccccce--eEeCceEEEEEeeeccCCCCCCcEE
Q 018497 140 ---LGFGVNSVSGHLDDFKVVYSLRSNSWKNIAYGFPR--S-IEINRSHINSS--VFLNGSVHWCARFSCYHDNSCPWLI 211 (355)
Q Consensus 140 ---~~~g~d~~~~~~~~ykvvyss~t~~W~~~~~~~p~--~-~~~~~~~~~~~--v~~~G~lyw~~~~~~~~~~~~~~~I 211 (355)
..+.-|.. ..++.++... + .... ..+. . ......+ + .-.+|..+|...++ .|
T Consensus 158 ~~~~~~~~Dg~-----~~~v~~d~~g-~-~~~~-~~~vf~~~~~~v~~r---P~~~~~dg~~~~vs~eG---------~V 217 (352)
T TIGR02658 158 DTFFMHCRDGS-----LAKVGYGTKG-N-PKIK-PTEVFHPEDEYLINH---PAYSNKSGRLVWPTYTG---------KI 217 (352)
T ss_pred CccEEEeecCc-----eEEEEecCCC-c-eEEe-eeeeecCCccccccC---CceEcCCCcEEEEecCC---------eE
Confidence 22222211 1222122222 2 2222 2221 0 0000111 3 33479999998876 89
Q ss_pred EEEEcCCc------eeeEecCC-C-CC-CCCCCceEEEEE--CCeEEEEEecCC--C-CccEEEEEEeccCCCCCCeEEE
Q 018497 212 VSFDFAKE------IFQTVMMP-Y-DL-STDDADKYLNVF--DGYLCVFATIPN--N-TFRSYELWVMKEYGLTESWTKL 277 (355)
Q Consensus 212 l~fD~~~~------~~~~i~lP-~-~~-~~~~~~~~L~~~--~G~L~~v~~~~~--~-~~~~l~iW~l~~~~~~~~W~~~ 277 (355)
...|+... .|..+..- . .. ...+... ++.. +++|++...... . ....=+||+++- ..+..+
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi 292 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRL 292 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEE
Confidence 99996543 23333110 0 01 1111222 3333 467877443111 0 012237899885 568888
Q ss_pred EEecCCCceeEeEEEeeCCc-EEEEEEeeCCceEEEEEeCCCCeE-EEE
Q 018497 278 YTIEKPQRIWWPLGFTERGK-IFIRGECRHGGYGLLVYNPHSDTF-KCI 324 (355)
Q Consensus 278 ~~i~~~~~~~~~~~~~~~g~-i~~~~~~~~~~~~l~~yd~~t~~~-~~v 324 (355)
.+|+... ....++++.+|+ .++.. ....+ .+.++|..+.+. +.+
T Consensus 293 ~~i~vG~-~~~~iavS~Dgkp~lyvt-n~~s~-~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 293 RKIELGH-EIDSINVSQDAKPLLYAL-STGDK-TLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCC-ceeeEEECCCCCeEEEEe-CCCCC-cEEEEECcCCeEEeee
Confidence 9988765 355678888887 66651 21234 599999999864 556
No 110
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=60.59 E-value=6.5 Score=35.52 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHhcCCc--------ccchhhcccchhhHhhhCC
Q 018497 3 CSSFRLPEDVMIDIFLRLEV--------KNLARLRCVCKSWNTLLTS 41 (355)
Q Consensus 3 ~~~~~LP~dll~eIL~rLP~--------~~l~r~r~VcK~W~~li~~ 41 (355)
..++.||.+++.+|+.|+.- ++++.+..|||.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 45679999999999999852 4788899999999997654
No 111
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.49 E-value=63 Score=28.10 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=50.9
Q ss_pred EEEEEcCCceeeEecCCCCCC-CCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEE-EecCCCceeE
Q 018497 211 IVSFDFAKEIFQTVMMPYDLS-TDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLY-TIEKPQRIWW 288 (355)
Q Consensus 211 Il~fD~~~~~~~~i~lP~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~~ 288 (355)
-..||+.+++++.+.++ ... .. ....--+|+|..+++... ....+++.....+.....|.+.. .+.... ++.
T Consensus 48 s~~yD~~tn~~rpl~v~-td~FCS---gg~~L~dG~ll~tGG~~~-G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-WYp 121 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ-TDTFCS---GGAFLPDGRLLQTGGDND-GNKAIRIFTPCTSDGTCDWTESPNDMQSGR-WYP 121 (243)
T ss_pred EEEEecCCCcEEeccCC-CCCccc---CcCCCCCCCEEEeCCCCc-cccceEEEecCCCCCCCCceECcccccCCC-ccc
Confidence 45699999999988776 332 21 112234688887777644 23455555544322345688764 344444 343
Q ss_pred eEEEeeCCcEEEE
Q 018497 289 PLGFTERGKIFIR 301 (355)
Q Consensus 289 ~~~~~~~g~i~~~ 301 (355)
-...-.||+|+++
T Consensus 122 T~~~L~DG~vlIv 134 (243)
T PF07250_consen 122 TATTLPDGRVLIV 134 (243)
T ss_pred cceECCCCCEEEE
Confidence 3444578899988
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=58.92 E-value=1.6e+02 Score=27.77 Aligned_cols=115 Identities=11% Similarity=0.167 Sum_probs=67.4
Q ss_pred EeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEecc
Q 018497 188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267 (355)
Q Consensus 188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~ 267 (355)
.=||.++-.+..+ ..+-.||+.+.. ..-.+| .+.. ..-.+.-.++.-+++...++ ..+.+|-|..
T Consensus 356 HpDgLifgtgt~d--------~~vkiwdlks~~-~~a~Fp-ght~--~vk~i~FsENGY~Lat~add---~~V~lwDLRK 420 (506)
T KOG0289|consen 356 HPDGLIFGTGTPD--------GVVKIWDLKSQT-NVAKFP-GHTG--PVKAISFSENGYWLATAADD---GSVKLWDLRK 420 (506)
T ss_pred cCCceEEeccCCC--------ceEEEEEcCCcc-ccccCC-CCCC--ceeEEEeccCceEEEEEecC---CeEEEEEehh
Confidence 3466666654443 678889999887 444777 5432 12233333444445544444 4699999986
Q ss_pred CCCCCCeEEEEEecCCCc-eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 018497 268 YGLTESWTKLYTIEKPQR-IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 268 ~~~~~~W~~~~~i~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~ 326 (355)
.. ...++.+... ....+.+...|..+.. ...+- +++.|+-.++.|.++..
T Consensus 421 l~------n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~l-~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 421 LK------NFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSDL-QVYICKKKTKSWTEIKE 471 (506)
T ss_pred hc------ccceeeccccccceeEEEcCCCCeEEe--eccee-EEEEEecccccceeeeh
Confidence 32 2233433331 2334556667766655 31333 58888999999988843
No 113
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=58.30 E-value=23 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=17.6
Q ss_pred cEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 297 KIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 297 ~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
.||+. . .++ .++.+|.+|++...-
T Consensus 2 ~v~~~--~-~~g-~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVG--T-PDG-YLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEE--T-TTS-EEEEEETTTTSEEEE
T ss_pred EEEEe--C-CCC-EEEEEECCCCCEEEe
Confidence 35555 4 667 599999999997654
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=58.00 E-value=1.3e+02 Score=26.13 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=57.6
Q ss_pred cEEEEEEcCCcee-eEecCCC-CCCCCC-CceEEE-EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497 209 WLIVSFDFAKEIF-QTVMMPY-DLSTDD-ADKYLN-VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ 284 (355)
Q Consensus 209 ~~Il~fD~~~~~~-~~i~lP~-~~~~~~-~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 284 (355)
..|..||+.+.+. ..+.... ...... ....+. .-+|+..++..... ..+.+|.++. |.....+....
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~~------~~~~~~~~~~~ 249 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAKT------YEVLDYLLVGQ 249 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECCC------CcEEEEEEeCC
Confidence 4788999987754 3332210 111111 111232 23465544443333 4788886543 44443332222
Q ss_pred ceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEecCc
Q 018497 285 RIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVHLPY 330 (355)
Q Consensus 285 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~~~~ 330 (355)
....+.+..+|+.++.+ ...++ .+.+||+++.+. +.+.+...+
T Consensus 250 -~~~~~~~~~~g~~l~~~-~~~~~-~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 250 -RVWQLAFTPDEKYLLTT-NGVSN-DVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred -CcceEEECCCCCEEEEE-cCCCC-eEEEEECCCCcEEEEEEccccc
Confidence 23346667788655551 22355 599999999985 667765433
No 115
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.57 E-value=1.5e+02 Score=26.57 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=74.2
Q ss_pred ee-EeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEec----C-CCCcc
Q 018497 186 SV-FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATI----P-NNTFR 258 (355)
Q Consensus 186 ~v-~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~----~-~~~~~ 258 (355)
+| .-+|.+.+...++ .+.++..|-.||.. +.++.+ +.| ... .+.+-.+..-+|++.++..- + .-...
T Consensus 119 Gvfs~dG~~LYATEnd---fd~~rGViGvYd~r-~~fqrvgE~~-t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~ 192 (366)
T COG3490 119 GVFSPDGRLLYATEND---FDPNRGVIGVYDAR-EGFQRVGEFS-THG-IGPHEVTLMADGRTLVVANGGIETHPDFGRT 192 (366)
T ss_pred cccCCCCcEEEeecCC---CCCCCceEEEEecc-cccceecccc-cCC-cCcceeEEecCCcEEEEeCCceecccccCcc
Confidence 44 4577766666554 25667889999999 788887 777 443 11222333445666555432 1 00112
Q ss_pred EEEEEEeccC-----CCCCCeEEEEEec--CCCceeEeEEEeeCCcEEEEEEeeCCc-----eEEEEEeCCCCeEEEEEE
Q 018497 259 SYELWVMKEY-----GLTESWTKLYTIE--KPQRIWWPLGFTERGKIFIRGECRHGG-----YGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 259 ~l~iW~l~~~-----~~~~~W~~~~~i~--~~~~~~~~~~~~~~g~i~~~~~~~~~~-----~~l~~yd~~t~~~~~v~~ 326 (355)
.+.+=.|+.. ..+..=.++++++ ...+..+-+.+..+|.|++- +.+.+ .-|+-.--+++.++-+..
T Consensus 193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg--cQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG--CQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE--EEeeCCCccCCcceeeccCCCcCcccCC
Confidence 3333333321 0123445566666 33335677888888888887 52222 146666666666666655
Q ss_pred e
Q 018497 327 H 327 (355)
Q Consensus 327 ~ 327 (355)
.
T Consensus 271 p 271 (366)
T COG3490 271 P 271 (366)
T ss_pred C
Confidence 4
No 116
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=55.75 E-value=42 Score=25.68 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=32.9
Q ss_pred EeeCCcEEEEEEe-eCCceEEEEEeCCCCeEEEEEEe--c--CcceeEEeeeecceecc
Q 018497 292 FTERGKIFIRGEC-RHGGYGLLVYNPHSDTFKCIGVH--L--PYYAIQVLNFVESIIEP 345 (355)
Q Consensus 292 ~~~~g~i~~~~~~-~~~~~~l~~yd~~t~~~~~v~~~--~--~~~~~~~~~y~~Slv~~ 345 (355)
+.-+|-+|..... ......++.||+++++++.+..+ . .........|...|.-+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 4457877776211 01122799999999999999885 1 11234455666666443
No 117
>PLN00181 protein SPA1-RELATED; Provisional
Probab=54.53 E-value=2.7e+02 Score=28.92 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=55.2
Q ss_pred cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeE
Q 018497 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWW 288 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 288 (355)
..|..||+.+..-....+. .... ....+.-.+|...+....+ ..+.||.+........|..+..+........
T Consensus 640 g~I~iwD~~~~~~~~~~~~-~h~~--~V~~v~f~~~~~lvs~s~D----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMI-GHSK--TVSYVRFVDSSTLVSSSTD----NTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred CeEEEEECCCCCccceEec-CCCC--CEEEEEEeCCCEEEEEECC----CEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 5899999976532111111 1111 1122333456665555554 4899999875322234665555543221234
Q ss_pred eEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497 289 PLGFTERGKIFIRGECRHGGYGLLVYNPHSD 319 (355)
Q Consensus 289 ~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~ 319 (355)
.+++..+|..++. ...++ .+.+||..+.
T Consensus 713 ~v~~s~~~~~las--gs~D~-~v~iw~~~~~ 740 (793)
T PLN00181 713 FVGLSVSDGYIAT--GSETN-EVFVYHKAFP 740 (793)
T ss_pred EEEEcCCCCEEEE--EeCCC-EEEEEECCCC
Confidence 4666666766666 42566 4899987765
No 118
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=52.67 E-value=1.7e+02 Score=26.15 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=57.6
Q ss_pred cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeE
Q 018497 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWW 288 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 288 (355)
....-.|+++.+-... +- .+..+.....|..+++..++-+..+. .-.+|-+.+. .-+.++.-......
T Consensus 166 ~TCalWDie~g~~~~~-f~-GH~gDV~slsl~p~~~ntFvSg~cD~----~aklWD~R~~------~c~qtF~ghesDIN 233 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQV-FH-GHTGDVMSLSLSPSDGNTFVSGGCDK----SAKLWDVRSG------QCVQTFEGHESDIN 233 (343)
T ss_pred ceEEEEEcccceEEEE-ec-CCcccEEEEecCCCCCCeEEeccccc----ceeeeeccCc------ceeEeecccccccc
Confidence 4566688887765432 11 33333344556666788988888775 7889998862 11223322222345
Q ss_pred eEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497 289 PLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320 (355)
Q Consensus 289 ~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~ 320 (355)
.+.++++|.=|.. ...+. ..-.||++...
T Consensus 234 sv~ffP~G~afat--GSDD~-tcRlyDlRaD~ 262 (343)
T KOG0286|consen 234 SVRFFPSGDAFAT--GSDDA-TCRLYDLRADQ 262 (343)
T ss_pred eEEEccCCCeeee--cCCCc-eeEEEeecCCc
Confidence 5777777766666 42444 47778888754
No 119
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.80 E-value=74 Score=32.91 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=41.1
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEEecCcce
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGVHLPYYA 332 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~~~~~~~ 332 (355)
..+.+|+|.+. ..|+.--.-.... ....+-++...++++. ...|+ .+-+||+...+- +..+-.+.++|
T Consensus 228 RqVKlWrmnet---KaWEvDtcrgH~n-nVssvlfhp~q~lIlS--nsEDk-sirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 228 RQVKLWRMNET---KAWEVDTCRGHYN-NVSSVLFHPHQDLILS--NSEDK-SIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred ceeeEEEeccc---cceeehhhhcccC-CcceEEecCccceeEe--cCCCc-cEEEEecccccceeeeeccCCeEE
Confidence 58999999983 5788742222211 2444555665567777 53455 699999998774 44433344333
No 120
>PF13013 F-box-like_2: F-box-like domain
Probab=51.75 E-value=8.7 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHhcCCcccchhhcccch
Q 018497 5 SFRLPEDVMIDIFLRLEVKNLARLRCVCK 33 (355)
Q Consensus 5 ~~~LP~dll~eIL~rLP~~~l~r~r~VcK 33 (355)
..+||+||+..|+..-....+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 45799999999999998877766555554
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=51.42 E-value=36 Score=30.66 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.6
Q ss_pred cEEEEEEeccCCCCC
Q 018497 258 RSYELWVMKEYGLTE 272 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~ 272 (355)
..++||.++|...++
T Consensus 108 r~Ir~w~~~DF~~~e 122 (420)
T KOG2096|consen 108 RSIRLWDVRDFENKE 122 (420)
T ss_pred ceEEEEecchhhhhh
Confidence 599999999875433
No 122
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=50.61 E-value=2.4e+02 Score=27.10 Aligned_cols=98 Identities=14% Similarity=0.147 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCc-ee-eEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497 208 PWLIVSFDFAKE-IF-QTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 285 (355)
Q Consensus 208 ~~~Il~fD~~~~-~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 285 (355)
...|-.+|.... .- ..+. .+....+ .....-.|++.+.+..+ .+++||.++.. +.+..+.....
T Consensus 224 D~tiriwd~~~~~~~~~~l~---gH~~~v~-~~~f~p~g~~i~Sgs~D----~tvriWd~~~~------~~~~~l~~hs~ 289 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLK---GHSTYVT-SVAFSPDGNLLVSGSDD----GTVRIWDVRTG------ECVRKLKGHSD 289 (456)
T ss_pred CceEEEeeccCCCeEEEEec---CCCCceE-EEEecCCCCEEEEecCC----CcEEEEeccCC------eEEEeeeccCC
Confidence 468889999443 22 3332 1221111 12223346676666666 49999999862 12223332222
Q ss_pred eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 286 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 286 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
....+.+..+|..+.. ...++ .+.+||..++...
T Consensus 290 ~is~~~f~~d~~~l~s--~s~d~-~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVS--ASYDG-TIRVWDLETGSKL 323 (456)
T ss_pred ceEEEEECCCCCEEEE--cCCCc-cEEEEECCCCcee
Confidence 3455667778877777 42566 5999999999953
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=49.94 E-value=2e+02 Score=26.11 Aligned_cols=36 Identities=8% Similarity=0.268 Sum_probs=26.5
Q ss_pred eEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEe
Q 018497 289 PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVH 327 (355)
Q Consensus 289 ~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~ 327 (355)
-+|+.++++.++. ...+. +++.||++.+.+..|+.+
T Consensus 192 ~iGiA~~~k~ims--as~dt-~i~lw~lkGq~L~~idtn 227 (420)
T KOG2096|consen 192 NIGIAGNAKYIMS--ASLDT-KICLWDLKGQLLQSIDTN 227 (420)
T ss_pred EEeecCCceEEEE--ecCCC-cEEEEecCCceeeeeccc
Confidence 3677666666666 53455 599999999999998664
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.48 E-value=2.9e+02 Score=27.82 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=47.2
Q ss_pred cEEEEEEcCCceeeEecCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCcee
Q 018497 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIW 287 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 287 (355)
..|.-.|+..|...++.-. . ++...+. ..++.+.+.++.+ .+++||.-+ +....|.++.-..
T Consensus 200 g~Ir~w~~~ge~l~~~~gh-t----n~vYsis~~~~~~~Ivs~gED----rtlriW~~~--------e~~q~I~lPttsi 262 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGH-T----NFVYSISMALSDGLIVSTGED----RTLRIWKKD--------ECVQVITLPTTSI 262 (745)
T ss_pred ceEEEEeccCceeeeeecc-c----eEEEEEEecCCCCeEEEecCC----ceEEEeecC--------ceEEEEecCccce
Confidence 4566666666655554311 1 1222333 3446676666655 499999866 3334555444324
Q ss_pred EeEEEeeCCcEEEEEEeeCCceEEEEEe
Q 018497 288 WPLGFTERGKIFIRGECRHGGYGLLVYN 315 (355)
Q Consensus 288 ~~~~~~~~g~i~~~~~~~~~~~~l~~yd 315 (355)
..+.+..+|+|+.. + .|+. +.+|-
T Consensus 263 Wsa~~L~NgDIvvg--~-SDG~-VrVfT 286 (745)
T KOG0301|consen 263 WSAKVLLNGDIVVG--G-SDGR-VRVFT 286 (745)
T ss_pred EEEEEeeCCCEEEe--c-cCce-EEEEE
Confidence 44555667788887 6 6664 44443
No 125
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.10 E-value=1.9e+02 Score=26.02 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=56.8
Q ss_pred cEEEEEEcCCceeeEe-cCCCCCCC----CCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCC
Q 018497 209 WLIVSFDFAKEIFQTV-MMPYDLST----DDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKP 283 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i-~lP~~~~~----~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 283 (355)
.-|..||+++++.+.+ .--+.+.. +.....--..+++|.++..+.. .++-||.++....+-+|....+-...
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh---~nLGvy~ldr~~g~~~~L~~~ps~KG 154 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH---ANLGVYSLDRRTGKAEKLSSNPSLKG 154 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc---ceeeeEEEcccCCceeeccCCCCcCc
Confidence 3589999999988887 21101111 1122222345689999888776 79999999964322223221111111
Q ss_pred CceeEeEEEeeCCcEEEEEEe-eCCceEEEEEeCCCCeE--EEEEE
Q 018497 284 QRIWWPLGFTERGKIFIRGEC-RHGGYGLLVYNPHSDTF--KCIGV 326 (355)
Q Consensus 284 ~~~~~~~~~~~~g~i~~~~~~-~~~~~~l~~yd~~t~~~--~~v~~ 326 (355)
.. .. +..+|.... ..+-..+.+||+.+++| +....
T Consensus 155 ~~-~~-------D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~ 192 (339)
T PF09910_consen 155 TL-VH-------DYACFGINNFHKGVSGIHCLDLISGKWVIESFDV 192 (339)
T ss_pred eE-ee-------eeEEEeccccccCCceEEEEEccCCeEEEEeccc
Confidence 10 11 122222000 01222599999999999 54433
No 126
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=48.96 E-value=1.8e+02 Score=25.26 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=74.6
Q ss_pred CcEEEE--EEcCCC-ceeEeccCCCceeeeccccccceeE--eCceEEEEEeeeccCCCCCCcEEEEEEcC-CceeeEe-
Q 018497 152 DDFKVV--YSLRSN-SWKNIAYGFPRSIEINRSHINSSVF--LNGSVHWCARFSCYHDNSCPWLIVSFDFA-KEIFQTV- 224 (355)
Q Consensus 152 ~~ykvv--yss~t~-~W~~~~~~~p~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~~~Il~fD~~-~~~~~~i- 224 (355)
..+... |+...+ +|+... ..+......+. .+. -+|.+|.+.... ......++.-.+ ..+|+..
T Consensus 131 ~~~~~~~~~S~D~G~tW~~~~-~~~~~~~~~e~----~~~~~~dG~l~~~~R~~-----~~~~~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 131 GSFSAFVYYSDDGGKTWSSGS-PIPDGQGECEP----SIVELPDGRLLAVFRTE-----GNDDIYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp CEEEEEEEEESSTTSSEEEEE-ECECSEEEEEE----EEEEETTSEEEEEEEEC-----SSTEEEEEEESSTTSS-EEEE
T ss_pred cCcceEEEEeCCCCceeeccc-cccccCCccee----EEEECCCCcEEEEEEcc-----CCCcEEEEEECCCCCcCCCce
Confidence 334444 565544 798887 33211111121 232 588999887662 112455666655 5578764
Q ss_pred --cCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC---ceeEeEEEeeCCcE
Q 018497 225 --MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ---RIWWPLGFTERGKI 298 (355)
Q Consensus 225 --~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~---~~~~~~~~~~~g~i 298 (355)
.+| ... ....+... +|++.++..... ....+.|+.-++. ...|.....|.... ..+..+....+|+|
T Consensus 201 ~~~~~-~~~---~~~~~~~~~~g~~~~~~~~~~-~r~~l~l~~S~D~--g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l 273 (275)
T PF13088_consen 201 PTNLP-NPN---SSISLVRLSDGRLLLVYNNPD-GRSNLSLYVSEDG--GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKL 273 (275)
T ss_dssp EEECS-SCC---EEEEEEECTTSEEEEEEECSS-TSEEEEEEEECTT--CEEEEEEEEEEEEE-CCEEEEEEEEEETTEE
T ss_pred ecccC-ccc---CCceEEEcCCCCEEEEEECCC-CCCceEEEEEeCC--CCcCCccEEEeCCCCCcEECCeeEEeCCCcC
Confidence 455 332 33445554 489988888421 2367888886664 46899888886543 23444555667777
Q ss_pred EE
Q 018497 299 FI 300 (355)
Q Consensus 299 ~~ 300 (355)
++
T Consensus 274 ~i 275 (275)
T PF13088_consen 274 YI 275 (275)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 127
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=47.22 E-value=2.2e+02 Score=25.73 Aligned_cols=171 Identities=9% Similarity=0.165 Sum_probs=67.1
Q ss_pred cccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-----EEcCC--CceeEeccCCCceeeeccccccceeEeCceEEEE
Q 018497 124 IKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-----YSLRS--NSWKNIAYGFPRSIEINRSHINSSVFLNGSVHWC 196 (355)
Q Consensus 124 T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-----yss~t--~~W~~~~~~~p~~~~~~~~~~~~~v~~~G~lyw~ 196 (355)
...|..+..+... ....+.|... ..-|-|- |-..+ .+|.......+...... -. .|..++.--|+
T Consensus 5 ~~~W~~v~l~t~~-~l~dV~F~d~---~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~-l~---~I~f~~~~g~i 76 (302)
T PF14870_consen 5 GNSWQQVSLPTDK-PLLDVAFVDP---NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYH-LN---SISFDGNEGWI 76 (302)
T ss_dssp S--EEEEE-S-SS--EEEEEESSS---S-EEEEETTTEEEEESSTTSS-EE-----S-----E-EE---EEEEETTEEEE
T ss_pred CCCcEEeecCCCC-ceEEEEEecC---CEEEEEecCCEEEEECCCCccccccccCCCccceee-EE---EEEecCCceEE
Confidence 3566666544333 2234444432 3333332 44443 48998762222211111 11 45444444456
Q ss_pred EeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeE
Q 018497 197 ARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWT 275 (355)
Q Consensus 197 ~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~ 275 (355)
.+.. ..|+.-.=..++|+.++++ ..... ....+...+ +...++.... .|+.-.|.+ ..|.
T Consensus 77 vG~~--------g~ll~T~DgG~tW~~v~l~-~~lpg-s~~~i~~l~~~~~~l~~~~G-------~iy~T~DgG--~tW~ 137 (302)
T PF14870_consen 77 VGEP--------GLLLHTTDGGKTWERVPLS-SKLPG-SPFGITALGDGSAELAGDRG-------AIYRTTDGG--KTWQ 137 (302)
T ss_dssp EEET--------TEEEEESSTTSS-EE-----TT-SS--EEEEEEEETTEEEEEETT---------EEEESSTT--SSEE
T ss_pred EcCC--------ceEEEecCCCCCcEEeecC-CCCCC-CeeEEEEcCCCcEEEEcCCC-------cEEEeCCCC--CCee
Confidence 5554 3455555578899999766 33321 223334434 5555554322 367777744 6898
Q ss_pred EEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEE
Q 018497 276 KLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 276 ~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~ 326 (355)
.+..-.... ..-+....+|.++.+ . ..++-+...|+....|+....
T Consensus 138 ~~~~~~~gs--~~~~~r~~dG~~vav--s-~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 138 AVVSETSGS--INDITRSSDGRYVAV--S-SRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp EEE-S------EEEEEE-TTS-EEEE--E-TTSSEEEEE-TT-SS-EEEE-
T ss_pred EcccCCcce--eEeEEECCCCcEEEE--E-CcccEEEEecCCCccceEEcc
Confidence 765422222 222223456666666 4 344334456666666666543
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.12 E-value=3.3e+02 Score=27.84 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=63.9
Q ss_pred eeEeC--ceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEE-EEECCeEEEEEecCCCCccEEEE
Q 018497 186 SVFLN--GSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYL-NVFDGYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 186 ~v~~~--G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L-~~~~G~L~~v~~~~~~~~~~l~i 262 (355)
.|.+| |-+-..+..+ ...|.+.++.|++.-.+-- .+- +.-..| ....|.+.+-..-+ .++++
T Consensus 440 cvavD~sGelV~AG~~d-------~F~IfvWS~qTGqllDiLs--GHE--gPVs~l~f~~~~~~LaS~SWD----kTVRi 504 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQD-------SFEIFVWSVQTGQLLDILS--GHE--GPVSGLSFSPDGSLLASGSWD----KTVRI 504 (893)
T ss_pred EEEEcCCCCEEEeeccc-------eEEEEEEEeecCeeeehhc--CCC--CcceeeEEccccCeEEecccc----ceEEE
Confidence 66677 8887776654 4679999999998866511 111 111222 23446655545555 49999
Q ss_pred EEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCC
Q 018497 263 WVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSD 319 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~ 319 (355)
|.+-+ +|..+.++..... .-.+.+.++| +|.+. . -++. +-.||.+.+
T Consensus 505 W~if~-----s~~~vEtl~i~sd-vl~vsfrPdG~elaVa--T-ldgq-Itf~d~~~~ 552 (893)
T KOG0291|consen 505 WDIFS-----SSGTVETLEIRSD-VLAVSFRPDGKELAVA--T-LDGQ-ITFFDIKEA 552 (893)
T ss_pred EEeec-----cCceeeeEeeccc-eeEEEEcCCCCeEEEE--E-ecce-EEEEEhhhc
Confidence 99875 4677777766543 2234444555 55555 4 4553 666666543
No 129
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=46.94 E-value=2.2e+02 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=21.7
Q ss_pred EEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 290 LGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 290 ~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
..++.+++.++. +-.++ ++.+||++++.-.
T Consensus 238 a~ftPds~Fvl~--gs~dg-~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 238 ATFTPDSKFVLS--GSDDG-TIHVWNLETGKKV 267 (311)
T ss_pred EEECCCCcEEEE--ecCCC-cEEEEEcCCCcEe
Confidence 445688888888 53556 5999999887643
No 130
>PRK04792 tolB translocation protein TolB; Provisional
Probab=46.84 E-value=2.7e+02 Score=26.65 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=59.7
Q ss_pred eCc-eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECC-eEEEEEecCCCCccEEEEEEe
Q 018497 189 LNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG-YLCVFATIPNNTFRSYELWVM 265 (355)
Q Consensus 189 ~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~l~iW~l 265 (355)
-|| .+.|..... ....|..+|+.+.+-..+ ..+ ... ..+... -+| +|+++...+ ...+||.+
T Consensus 227 PDG~~La~~s~~~------g~~~L~~~dl~tg~~~~lt~~~-g~~---~~~~wS-PDG~~La~~~~~~----g~~~Iy~~ 291 (448)
T PRK04792 227 PDGRKLAYVSFEN------RKAEIFVQDIYTQVREKVTSFP-GIN---GAPRFS-PDGKKLALVLSKD----GQPEIYVV 291 (448)
T ss_pred CCCCEEEEEEecC------CCcEEEEEECCCCCeEEecCCC-CCc---CCeeEC-CCCCEEEEEEeCC----CCeEEEEE
Confidence 355 455554332 235799999988776655 334 221 122222 234 465554433 35677777
Q ss_pred ccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCC-ceEEEEEeCCCCeEEEEEE
Q 018497 266 KEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHG-GYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 266 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~-~~~l~~yd~~t~~~~~v~~ 326 (355)
+-.+ ....++.. .........+..+| .|++. ...+ ...++.+|+++++.+.+-.
T Consensus 292 dl~t--g~~~~lt~---~~~~~~~p~wSpDG~~I~f~--s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 292 DIAT--KALTRITR---HRAIDTEPSWHPDGKSLIFT--SERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred ECCC--CCeEECcc---CCCCccceEECCCCCEEEEE--ECCCCCceEEEEECCCCCEEEEec
Confidence 6432 23333211 11111223345566 56666 3122 2269999999998887743
No 131
>PF13854 Kelch_5: Kelch motif
Probab=46.25 E-value=62 Score=19.13 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=20.9
Q ss_pred ceEEEEECCeEEEEEecCC-CCccEEEEEEec
Q 018497 236 DKYLNVFDGYLCVFATIPN-NTFRSYELWVMK 266 (355)
Q Consensus 236 ~~~L~~~~G~L~~v~~~~~-~~~~~l~iW~l~ 266 (355)
....+..+++|+++++... .....=++|+++
T Consensus 7 ~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred ceEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 4556677899999998762 222344678776
No 132
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=45.80 E-value=2.6e+02 Score=26.17 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=64.2
Q ss_pred EeCceEEEEEeeeccCCCCCCcEEEEEEcCCce---eeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEE
Q 018497 188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI---FQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWV 264 (355)
Q Consensus 188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~---~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~ 264 (355)
..++.+|.+... +.....|++.|+.+-. |..+-.| . ..+.....+...+++|.+....+. ...+.++.
T Consensus 285 ~~~~~~yi~Tn~-----~a~~~~l~~~~l~~~~~~~~~~~l~~-~-~~~~~l~~~~~~~~~Lvl~~~~~~--~~~l~v~~ 355 (414)
T PF02897_consen 285 HHGDRLYILTND-----DAPNGRLVAVDLADPSPAEWWTVLIP-E-DEDVSLEDVSLFKDYLVLSYRENG--SSRLRVYD 355 (414)
T ss_dssp EETTEEEEEE-T-----T-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETT--EEEEEEEE
T ss_pred ccCCEEEEeeCC-----CCCCcEEEEecccccccccceeEEcC-C-CCceeEEEEEEECCEEEEEEEECC--ccEEEEEE
Confidence 457778877664 3566789999998765 5543222 1 111122345566788888777654 24555555
Q ss_pred eccCCCCCCeEEEEEecCCCceeEeEEEe--e-CCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497 265 MKEYGLTESWTKLYTIEKPQRIWWPLGFT--E-RGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 265 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~-~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~ 325 (355)
++ ..|... .++.... ....+.. . ...++|.-.+-..-..++.||+++++.+.+.
T Consensus 356 ~~-----~~~~~~-~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 356 LD-----DGKESR-EIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TT------TEEEE-EEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CC-----CCcEEe-eecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 44 134443 3333221 2222222 1 2356665112011127999999999998875
No 133
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=43.77 E-value=3e+02 Score=26.37 Aligned_cols=183 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred ceEEEeecCCCCceEEEEcCCc-ccEEe-----------cCCCCCCCceeEEEEecCCCCCCcEEEEEEcCCCceeEecc
Q 018497 103 GVLCFCSNGSDRSLIYLWNPLI-KKYMT-----------LPRPSLNPRYLGFGVNSVSGHLDDFKVVYSLRSNSWKNIAY 170 (355)
Q Consensus 103 GLl~l~~~~~~~~~~~V~NP~T-~~~~~-----------LP~~~~~~~~~~~g~d~~~~~~~~ykvvyss~t~~W~~~~~ 170 (355)
|=|+++.+ .+..++|||-.. +..++ +-.......+..-+||.. .|+ +|.+||+=..--
T Consensus 227 ~hLlLS~g--mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~------lKl-wDtETG~~~~~f- 296 (503)
T KOG0282|consen 227 GHLLLSGG--MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF------LKL-WDTETGQVLSRF- 296 (503)
T ss_pred eeEEEecC--CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee------eee-eccccceEEEEE-
Q ss_pred CCCceeeeccccccceeEeCc-eEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCeEEE
Q 018497 171 GFPRSIEINRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGYLCV 248 (355)
Q Consensus 171 ~~p~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~L~~ 248 (355)
......... -..-++ .++..+..+ ..|+.+|.++.++ +++.-- -.. ..-..-.-+|+=++
T Consensus 297 ~~~~~~~cv------kf~pd~~n~fl~G~sd--------~ki~~wDiRs~kvvqeYd~h-Lg~---i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 297 HLDKVPTCV------KFHPDNQNIFLVGGSD--------KKIRQWDIRSGKVVQEYDRH-LGA---ILDITFVDEGRRFI 358 (503)
T ss_pred ecCCCceee------ecCCCCCcEEEEecCC--------CcEEEEeccchHHHHHHHhh-hhh---eeeeEEccCCceEe
Q ss_pred EEecCCCCccEEEEEEecc--------------------CCCCCCeEEEEEecCCCc-----------------------
Q 018497 249 FATIPNNTFRSYELWVMKE--------------------YGLTESWTKLYTIEKPQR----------------------- 285 (355)
Q Consensus 249 v~~~~~~~~~~l~iW~l~~--------------------~~~~~~W~~~~~i~~~~~----------------------- 285 (355)
...++. .+.||+.+. +. ...|..-..++..-.
T Consensus 359 ssSDdk----s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 359 SSSDDK----SVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eeccCc----cEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Q ss_pred eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 286 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 286 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
+-.-+.+..+|..++. ...+++ ++.||-+|-++
T Consensus 434 ys~~v~fSpDG~~l~S--GdsdG~-v~~wdwkt~kl 466 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCS--GDSDGK-VNFWDWKTTKL 466 (503)
T ss_pred ceeeEEEcCCCCeEEe--ecCCcc-EEEeechhhhh
No 134
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=43.64 E-value=2e+02 Score=26.54 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 243 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 243 ~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
+|..+.....+ .++++|.+.-. ..+.++.-...+.+-+++...|+-++. +.+++ .|-+||+++++-.
T Consensus 303 ~~~~l~s~SrD----ktIk~wdv~tg------~cL~tL~ghdnwVr~~af~p~Gkyi~S--caDDk-tlrvwdl~~~~cm 369 (406)
T KOG0295|consen 303 GGQVLGSGSRD----KTIKIWDVSTG------MCLFTLVGHDNWVRGVAFSPGGKYILS--CADDK-TLRVWDLKNLQCM 369 (406)
T ss_pred CccEEEeeccc----ceEEEEeccCC------eEEEEEecccceeeeeEEcCCCeEEEE--EecCC-cEEEEEeccceee
Confidence 34566655555 49999998741 333444332226777888888877776 63555 6999999998865
Q ss_pred EE
Q 018497 323 CI 324 (355)
Q Consensus 323 ~v 324 (355)
+.
T Consensus 370 k~ 371 (406)
T KOG0295|consen 370 KT 371 (406)
T ss_pred ec
Confidence 54
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=42.77 E-value=1.2e+02 Score=30.18 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=59.5
Q ss_pred cEEEEEEcCCceeeE----ecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497 209 WLIVSFDFAKEIFQT----VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ 284 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~----i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 284 (355)
..|.-||.....++. +.-| ....+..+.|.-..|+.++|....+ .+++.|.++...- .. .++.+.+
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGD---sT~r~Wdvk~s~l----~G-~~~~~GH 143 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGD---STIRPWDVKTSRL----VG-GRLNLGH 143 (720)
T ss_pred Cceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCC---ceeeeeeecccee----ec-ceeeccc
Confidence 489999999888871 1112 1122234556656699999998877 7999999986421 10 1122222
Q ss_pred c-eeEeEEEeeCC-cEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 285 R-IWWPLGFTERG-KIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 285 ~-~~~~~~~~~~g-~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
. -...+++...+ .+|.. ...|+. +.++|++.+.+.
T Consensus 144 ~~SvkS~cf~~~n~~vF~t--GgRDg~-illWD~R~n~~d 180 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCT--GGRDGE-ILLWDCRCNGVD 180 (720)
T ss_pred ccccchhhhccCCCcceee--ccCCCc-EEEEEEeccchh
Confidence 1 23335555555 44444 335664 888888887743
No 136
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=42.56 E-value=1.5e+02 Score=25.99 Aligned_cols=76 Identities=7% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCeEEEEEecCCCCccEEEEEEec---cCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497 243 DGYLCVFATIPNNTFRSYELWVMK---EYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 319 (355)
Q Consensus 243 ~G~L~~v~~~~~~~~~~l~iW~l~---~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~ 319 (355)
+++++++..... . .|.+.+ +.-......+.+.++... ...-.+.-+|.+|+. . .....++.||++++
T Consensus 30 ~~~iy~~~~~~~---~--~v~ey~~~~~f~~~~~~~~~~~Lp~~~--~GtG~vVYngslYY~--~-~~s~~IvkydL~t~ 99 (250)
T PF02191_consen 30 SEKIYVTSGFSG---N--TVYEYRNYEDFLRNGRSSRTYKLPYPW--QGTGHVVYNGSLYYN--K-YNSRNIVKYDLTTR 99 (250)
T ss_pred CCCEEEECccCC---C--EEEEEcCHhHHhhcCCCceEEEEecee--ccCCeEEECCcEEEE--e-cCCceEEEEECcCC
Confidence 456777666554 2 223332 220234566777777432 222223346778888 6 44446999999999
Q ss_pred eEE-EEEEec
Q 018497 320 TFK-CIGVHL 328 (355)
Q Consensus 320 ~~~-~v~~~~ 328 (355)
+.. ...+.+
T Consensus 100 ~v~~~~~L~~ 109 (250)
T PF02191_consen 100 SVVARRELPG 109 (250)
T ss_pred cEEEEEECCc
Confidence 998 666654
No 137
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=41.62 E-value=1.7e+02 Score=26.32 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=40.5
Q ss_pred CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 243 DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 243 ~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
+|..++-++.+ ..+-+|..-+.. +.-|..+ ...-...-+....++..++. +..|. ++..+|.+|++.
T Consensus 58 ~gs~~aSgG~D----r~I~LWnv~gdc-eN~~~lk----gHsgAVM~l~~~~d~s~i~S--~gtDk-~v~~wD~~tG~~ 124 (338)
T KOG0265|consen 58 DGSCFASGGSD----RAIVLWNVYGDC-ENFWVLK----GHSGAVMELHGMRDGSHILS--CGTDK-TVRGWDAETGKR 124 (338)
T ss_pred CCCeEeecCCc----ceEEEEeccccc-cceeeec----cccceeEeeeeccCCCEEEE--ecCCc-eEEEEeccccee
Confidence 46665555555 488899975543 3457765 11101222233456777777 64566 699999999875
No 138
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=41.29 E-value=89 Score=23.28 Aligned_cols=45 Identities=16% Similarity=0.380 Sum_probs=33.1
Q ss_pred ceEEEEcCCccc-EEecCCCCCCCceeEEEEecCCCCCCcEEEE-EEcCCC--cee
Q 018497 115 SLIYLWNPLIKK-YMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-YSLRSN--SWK 166 (355)
Q Consensus 115 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-yss~t~--~W~ 166 (355)
-+++..+|-+++ |... .....+.+..|.. .+.|.|. |+..++ .|.
T Consensus 16 A~v~~~~p~~~~~W~~~----~~~g~v~~v~d~~---~~~y~I~~~~~~~~~~v~e 64 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV----KGTGVVCFVKDNS---RRSYFIRLYDLQDGKVVWE 64 (111)
T ss_dssp EEEEEEETTTSESEEES----SSEEEEEEEEETT---TTEEEEEEEETTTTEEEEE
T ss_pred EEEEEEEcCCCCcEeeC----CeEEEEEEEEECC---CCEEEEEEEEccccEEEEE
Confidence 468899999988 9876 2222367778888 8899988 886665 554
No 139
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=40.91 E-value=1.3e+02 Score=29.04 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=57.0
Q ss_pred cEEEEEEcCCc--eeeEecCCCCCCCCC-CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497 209 WLIVSFDFAKE--IFQTVMMPYDLSTDD-ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 285 (355)
Q Consensus 209 ~~Il~fD~~~~--~~~~i~lP~~~~~~~-~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 285 (355)
.+|-+.|+..- ++-+-.|+ ---.++ ..-+..-.+|+-.++++.. .++.||-|..-. =..+..++....
T Consensus 440 gcVKVWdis~pg~k~PvsqLd-cl~rdnyiRSckL~pdgrtLivGGea----stlsiWDLAapT----prikaeltssap 510 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLD-CLNRDNYIRSCKLLPDGRTLIVGGEA----STLSIWDLAAPT----PRIKAELTSSAP 510 (705)
T ss_pred CeEEEeeccCCCCCCcccccc-ccCcccceeeeEecCCCceEEecccc----ceeeeeeccCCC----cchhhhcCCcch
Confidence 57888887633 22222444 111222 2334455668877877764 599999998521 111222322221
Q ss_pred eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 286 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 286 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
.+..+++..|.++.|. +-.++. +.+||+..+++
T Consensus 511 aCyALa~spDakvcFs--ccsdGn-I~vwDLhnq~~ 543 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFS--CCSDGN-IAVWDLHNQTL 543 (705)
T ss_pred hhhhhhcCCccceeee--eccCCc-EEEEEccccee
Confidence 2334555666678886 546674 88888887765
No 140
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=40.28 E-value=2.6e+02 Score=24.56 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=57.8
Q ss_pred CcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497 208 PWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 286 (355)
Q Consensus 208 ~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 286 (355)
...|-+.|+.++.+..-.+| +... ....|.+. +|+..++.... .+.-+|.|-.......-.-++.+....-.
T Consensus 145 sg~irvWDl~~~~c~~~liP-e~~~--~i~sl~v~~dgsml~a~nnk----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIP-EDDT--SIQSLTVMPDGSMLAAANNK----GNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CCcEEEEEccCCccccccCC-CCCc--ceeeEEEcCCCcEEEEecCC----ccEEEEEccCCCccccceEhhheecccce
Confidence 45799999999999888888 5543 22334443 46554444443 47889999753222222222333222211
Q ss_pred eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCC
Q 018497 287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSD 319 (355)
Q Consensus 287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~ 319 (355)
.--.-+..+++.+.. +..+. ++.+++.++-
T Consensus 218 il~C~lSPd~k~lat--~ssdk-tv~iwn~~~~ 247 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLAT--CSSDK-TVKIWNTDDF 247 (311)
T ss_pred EEEEEECCCCcEEEe--ecCCc-eEEEEecCCc
Confidence 111223556666666 53444 6888888887
No 141
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=39.96 E-value=2.2e+02 Score=24.88 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCC----CCCeEEEEEecCCCc---eeEeEEEe-eCCc
Q 018497 226 MPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGL----TESWTKLYTIEKPQR---IWWPLGFT-ERGK 297 (355)
Q Consensus 226 lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~----~~~W~~~~~i~~~~~---~~~~~~~~-~~g~ 297 (355)
+| ....++....++-.+..|...+. ..+.-|...+..+ ++.|+.+..+..... ....+.+. .++.
T Consensus 56 v~-eqahdgpiy~~~f~d~~Lls~gd------G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS 128 (325)
T KOG0649|consen 56 VP-EQAHDGPIYYLAFHDDFLLSGGD------GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS 128 (325)
T ss_pred ee-ccccCCCeeeeeeehhheeeccC------ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc
Q ss_pred EEEEEEeeCCceEEEEEeCCCCeEEEEEEecCcceeEEeeeecceeccCCCCcccccC
Q 018497 298 IFIRGECRHGGYGLLVYNPHSDTFKCIGVHLPYYAIQVLNFVESIIEPVSQSLILSRS 355 (355)
Q Consensus 298 i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~~~~~~~~~~~y~~Slv~~~~~~~~~~~~ 355 (355)
|++. . .|+. ++..|++++++++. +..-.-|+-++|.=.+..-+||-+
T Consensus 129 i~~A--g-GD~~-~y~~dlE~G~i~r~-------~rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 129 ILFA--G-GDGV-IYQVDLEDGRIQRE-------YRGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred EEEe--c-CCeE-EEEEEecCCEEEEE-------EcCCcceeeeeeecccCcceeecC
No 142
>PRK04043 tolB translocation protein TolB; Provisional
Probab=39.15 E-value=3.4e+02 Score=25.71 Aligned_cols=102 Identities=9% Similarity=0.079 Sum_probs=58.1
Q ss_pred cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497 209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 286 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 286 (355)
..|..+|+.+++-+.+ ..+ ... ..... .-+| +|.+..... ..-+||.++-.+ ..+.++...+...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~-g~~---~~~~~-SPDG~~la~~~~~~----g~~~Iy~~dl~~--g~~~~LT~~~~~d-- 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ-GML---VVSDV-SKDGSKLLLTMAPK----GQPDIYLYDTNT--KTLTQITNYPGID-- 279 (419)
T ss_pred CEEEEEECCCCcEEEEecCC-CcE---EeeEE-CCCCCEEEEEEccC----CCcEEEEEECCC--CcEEEcccCCCcc--
Confidence 4799999998877776 433 211 11222 2345 565554433 356788887532 3455543322111
Q ss_pred eEeEEEeeCC-cEEEEEEeeC-CceEEEEEeCCCCeEEEEEE
Q 018497 287 WWPLGFTERG-KIFIRGECRH-GGYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 287 ~~~~~~~~~g-~i~~~~~~~~-~~~~l~~yd~~t~~~~~v~~ 326 (355)
..| .+..+| .|+|. ... +...|+.+|+++++.+++-.
T Consensus 280 ~~p-~~SPDG~~I~F~--Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 280 VNG-NFVEDDKRIVFV--SDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred Ccc-EECCCCCEEEEE--ECCCCCceEEEEECCCCCeEeCcc
Confidence 222 345677 68888 422 22269999999999977744
No 143
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=39.10 E-value=2.2e+02 Score=28.85 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=35.8
Q ss_pred EEEEEEcCCceeeEecCCCCCCCC-CCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 018497 210 LIVSFDFAKEIFQTVMMPYDLSTD-DADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 281 (355)
Q Consensus 210 ~Il~fD~~~~~~~~i~lP~~~~~~-~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 281 (355)
.|...|+.+.+.. +|....++ ...-.++...+.-.++..... .-+++|.++...--++|.-.++-|
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRS---QLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeecc---ceEEEEEcccchHhHhHhhccCCC
Confidence 6899999998876 44111111 111223322222233333333 589999998753345787766544
No 144
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=38.92 E-value=3e+02 Score=24.95 Aligned_cols=81 Identities=12% Similarity=0.246 Sum_probs=44.8
Q ss_pred eeEe-CceEEEEEeeeccCCCCC-CcEEEEEEcC-CceeeEe-cCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEE
Q 018497 186 SVFL-NGSVHWCARFSCYHDNSC-PWLIVSFDFA-KEIFQTV-MMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSY 260 (355)
Q Consensus 186 ~v~~-~G~lyw~~~~~~~~~~~~-~~~Il~fD~~-~~~~~~i-~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l 260 (355)
+|.. ||.|-+-.... ..... ...++.|-.+ ...|..- -+|...+ ..+.+++. +|+|.|+...+. ..-
T Consensus 126 GV~m~dGTLVFPv~a~--~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC---~~psv~EWe~gkLlM~~~c~~---g~r 197 (310)
T PF13859_consen 126 GVVMEDGTLVFPVQAT--KKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGC---SDPSVVEWEDGKLLMMTACDD---GRR 197 (310)
T ss_dssp -EE-TTS-EEEEEEEE--ETT---EEEEEEEESSTTSS-EE-S----TT----EEEEEEEE-TTEEEEEEE-TT---S--
T ss_pred ceEEcCCCEEEEEeee--ccCccceEEEEEEECCCccceEeccccCCCCc---ceEEEEeccCCeeEEEEeccc---ceE
Confidence 5555 88888754332 12233 3678888877 7788865 3431222 57899999 799999998876 355
Q ss_pred EEEEeccCCCCCCeEE
Q 018497 261 ELWVMKEYGLTESWTK 276 (355)
Q Consensus 261 ~iW~l~~~~~~~~W~~ 276 (355)
+|.+=.|- ...|++
T Consensus 198 rVYeS~Dm--G~tWte 211 (310)
T PF13859_consen 198 RVYESGDM--GTTWTE 211 (310)
T ss_dssp -EEEESST--TSS-EE
T ss_pred EEEEEccc--ceehhh
Confidence 66666653 467997
No 145
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=36.99 E-value=1.3e+02 Score=27.21 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=40.0
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIP 253 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~ 253 (355)
+-..+|.||...... ..+..+|++++++..+ .+| .... -|+-. |.+.+|+...
T Consensus 208 PRWhdgrLwvldsgt--------Gev~~vD~~~G~~e~Va~vp-G~~r-----GL~f~-G~llvVgmSk 261 (335)
T TIGR03032 208 PRWYQGKLWLLNSGR--------GELGYVDPQAGKFQPVAFLP-GFTR-----GLAFA-GDFAFVGLSK 261 (335)
T ss_pred CcEeCCeEEEEECCC--------CEEEEEcCCCCcEEEEEECC-CCCc-----cccee-CCEEEEEecc
Confidence 668899999987665 6899999999999888 888 5431 12222 8888887754
No 146
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=36.77 E-value=3.6e+02 Score=25.22 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCceEEEEcCCcccEEecCCCCCCCceeEEEEecC
Q 018497 113 DRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSV 147 (355)
Q Consensus 113 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~ 147 (355)
-++.+.+|||-|++..-=|-........++.+.|.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 56789999999998875443333322356666554
No 147
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=36.37 E-value=1.9e+02 Score=28.34 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=54.5
Q ss_pred eeCceEEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE----------EEcCCCceeEec
Q 018497 100 SCNGVLCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV----------YSLRSNSWKNIA 169 (355)
Q Consensus 100 s~~GLl~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv----------yss~t~~W~~~~ 169 (355)
..+|-+++++. ++.++.||||..++...+-........+..-|-|. +++=.|+ ||...-+=+..+
T Consensus 59 n~dG~lL~SGS--DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~---tnnriv~sgAgDk~i~lfdl~~~~~~~~d 133 (758)
T KOG1310|consen 59 NADGELLASGS--DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY---TNNRIVLSGAGDKLIKLFDLDSSKEGGMD 133 (758)
T ss_pred cCCCCEEeecC--CcceEEeecchhcceeeeeecccccceeEEeeecc---CCCeEEEeccCcceEEEEecccccccccc
Confidence 35777888874 78899999999544433222111112255555565 5443333 665532222111
Q ss_pred cCC--Cce-eee-ccccccceeEeCc-eEEEEEeeeccCCCCCCcEEEEEEcCC
Q 018497 170 YGF--PRS-IEI-NRSHINSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAK 218 (355)
Q Consensus 170 ~~~--p~~-~~~-~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~ 218 (355)
..+ +.. +.+ ....++-++.=+| ..+|-+.++ ..|.-||+..
T Consensus 134 ~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED--------GtirQyDiRE 179 (758)
T KOG1310|consen 134 HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED--------GTIRQYDIRE 179 (758)
T ss_pred cCccchhhhhhhhhhhhhheecCCCCCceEEEecCC--------cceeeecccC
Confidence 001 100 000 1111111344455 788887776 6899999875
No 148
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=36.21 E-value=3.2e+02 Score=24.52 Aligned_cols=104 Identities=12% Similarity=0.169 Sum_probs=60.3
Q ss_pred cEEEEEEcCCc-----eeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecC
Q 018497 209 WLIVSFDFAKE-----IFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEK 282 (355)
Q Consensus 209 ~~Il~fD~~~~-----~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 282 (355)
..|+.|++.+. ++..+ ..+ . .+....+...+|+|.+... ..+.++.++.. ..+..+...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-~---~g~V~ai~~~~~~lv~~~g------~~l~v~~l~~~---~~l~~~~~~~~ 128 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-V---KGPVTAICSFNGRLVVAVG------NKLYVYDLDNS---KTLLKKAFYDS 128 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-E---SS-EEEEEEETTEEEEEET------TEEEEEEEETT---SSEEEEEEE-B
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-e---cCcceEhhhhCCEEEEeec------CEEEEEEccCc---ccchhhheecc
Confidence 67888998884 55555 222 1 1134678888999544442 49999999972 24788777765
Q ss_pred CCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEEEecC
Q 018497 283 PQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIGVHLP 329 (355)
Q Consensus 283 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~~~~~ 329 (355)
... . ..+...+..++++.. ..+-.++.|+.+.+++..+.-...
T Consensus 129 ~~~-i--~sl~~~~~~I~vgD~-~~sv~~~~~~~~~~~l~~va~d~~ 171 (321)
T PF03178_consen 129 PFY-I--TSLSVFKNYILVGDA-MKSVSLLRYDEENNKLILVARDYQ 171 (321)
T ss_dssp SSS-E--EEEEEETTEEEEEES-SSSEEEEEEETTTE-EEEEEEESS
T ss_pred eEE-E--EEEeccccEEEEEEc-ccCEEEEEEEccCCEEEEEEecCC
Confidence 532 2 222222334445222 233256677887777888765433
No 149
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.73 E-value=3.7e+02 Score=25.02 Aligned_cols=181 Identities=14% Similarity=0.154 Sum_probs=85.4
Q ss_pred CCceEEEEcCCcccEE-ecCCCCCCCceeEEEEecCCCCCCcEEEE---------EEcCCCceeEeccCCCceeeecccc
Q 018497 113 DRSLIYLWNPLIKKYM-TLPRPSLNPRYLGFGVNSVSGHLDDFKVV---------YSLRSNSWKNIAYGFPRSIEINRSH 182 (355)
Q Consensus 113 ~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~g~d~~~~~~~~ykvv---------yss~t~~W~~~~~~~p~~~~~~~~~ 182 (355)
..+.+.|.|..|++.+ .+|..... ..++.+.+. +.|-.+ +|..+++ .+. ..+.+.....-
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~D----gr~~yv~~rdg~vsviD~~~~~--~v~-~i~~G~~~~~i- 83 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP--HAGLKFSPD----GRYLYVANRDGTVSVIDLATGK--VVA-TIKVGGNPRGI- 83 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE--EEEEE-TT-----SSEEEEEETTSEEEEEETTSSS--EEE-EEE-SSEEEEE-
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc--eeEEEecCC----CCEEEEEcCCCeEEEEECCccc--EEE-EEecCCCcceE-
Confidence 4678899999987754 56543221 122333332 222222 5555544 333 22222221111
Q ss_pred ccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCce-eeEecCCCCCCC---CCCceEEEEEC-CeEEEEEecCCCCc
Q 018497 183 INSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEI-FQTVMMPYDLST---DDADKYLNVFD-GYLCVFATIPNNTF 257 (355)
Q Consensus 183 ~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~-~~~i~lP~~~~~---~~~~~~L~~~~-G~L~~v~~~~~~~~ 257 (355)
.+.-+|+.-+.+... ...+..+|.++.+ ...|+.. .... ......+.... +..+++...+.
T Consensus 84 ---~~s~DG~~~~v~n~~-------~~~v~v~D~~tle~v~~I~~~-~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~--- 149 (369)
T PF02239_consen 84 ---AVSPDGKYVYVANYE-------PGTVSVIDAETLEPVKTIPTG-GMPVDGPESRVAAIVASPGRPEFVVNLKDT--- 149 (369)
T ss_dssp ---EE--TTTEEEEEEEE-------TTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEETTT---
T ss_pred ---EEcCCCCEEEEEecC-------CCceeEeccccccceeecccc-cccccccCCCceeEEecCCCCEEEEEEccC---
Confidence 455688766655543 4789999987654 3555433 2111 11122344444 45566666543
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
-+||+++-...+. .+...+....+ ..-.++..+|+-++. .....+.+.+.|.++++...+
T Consensus 150 --~~I~vVdy~d~~~--~~~~~i~~g~~-~~D~~~dpdgry~~v--a~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 150 --GEIWVVDYSDPKN--LKVTTIKVGRF-PHDGGFDPDGRYFLV--AANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp --TEEEEEETTTSSC--EEEEEEE--TT-EEEEEE-TTSSEEEE--EEGGGTEEEEEETTTTEEEEE
T ss_pred --CeEEEEEeccccc--cceeeeccccc-ccccccCcccceeee--cccccceeEEEeeccceEEEE
Confidence 3679886322222 22234444332 333566777766665 313333699999999987553
No 150
>PRK04043 tolB translocation protein TolB; Provisional
Probab=35.03 E-value=4e+02 Score=25.26 Aligned_cols=182 Identities=10% Similarity=0.095 Sum_probs=96.5
Q ss_pred CceEEEEcCCcccEEecCCCCCCC---------ceeEEEEecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeeccccc
Q 018497 114 RSLIYLWNPLIKKYMTLPRPSLNP---------RYLGFGVNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSHI 183 (355)
Q Consensus 114 ~~~~~V~NP~T~~~~~LP~~~~~~---------~~~~~g~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~~ 183 (355)
...+++.|..|++-..|-..+... ....+..+. .++..+. ++..++.++.+. ..+... ...
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl~~g~~~~LT-~~~~~d--~~p-- 282 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDTNTKTLTQIT-NYPGID--VNG-- 282 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEECCCCcEEEcc-cCCCcc--Ccc--
Confidence 568999999999988876533221 013333332 2234444 788888888876 333211 110
Q ss_pred cceeEeCc-eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECC-eEEEEEecCCCC--ccE
Q 018497 184 NSSVFLNG-SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDG-YLCVFATIPNNT--FRS 259 (355)
Q Consensus 184 ~~~v~~~G-~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~--~~~ 259 (355)
...=|| .+|+..... ....|..+|+.+.+.+.+-.- .. ..... .-+| .|.++....... ...
T Consensus 283 --~~SPDG~~I~F~Sdr~------g~~~Iy~~dl~~g~~~rlt~~-g~----~~~~~-SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 283 --NFVEDDKRIVFVSDRL------GYPNIFMKKLNSGSVEQVVFH-GK----NNSSV-STYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred --EECCCCCEEEEEECCC------CCceEEEEECCCCCeEeCccC-CC----cCceE-CCCCCEEEEEEcCCCcccCCCC
Confidence 233356 577766443 235799999998888655211 11 11222 2244 455444332110 123
Q ss_pred EEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeC-CceEEEEEeCCCCeEEEEEE
Q 018497 260 YELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRH-GGYGLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 260 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~-~~~~l~~yd~~t~~~~~v~~ 326 (355)
.+|+.++-.+ ..+..+..- .....| .+..+| .|++. ... +...+..++++.+.-..+..
T Consensus 349 ~~I~v~d~~~--g~~~~LT~~---~~~~~p-~~SPDG~~I~f~--~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 349 FNLYLISTNS--DYIRRLTAN---GVNQFP-RFSSDGGSIMFI--KYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred cEEEEEECCC--CCeEECCCC---CCcCCe-EECCCCCEEEEE--EccCCcEEEEEEecCCCeeEEeec
Confidence 6788887432 334433221 111223 346677 46666 312 22268899999887776654
No 151
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.84 E-value=2.6e+02 Score=25.37 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=36.6
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEEE
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v~ 325 (355)
.++.||.|.+-. +-+.+|....- ..-+++...+.|+-. . .+.+.+-.||+..+++-++.
T Consensus 378 rTvKvWdLrNMR-----splATIRtdS~-~NRvavs~g~~iIAi--P-hDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 378 RTVKVWDLRNMR-----SPLATIRTDSP-ANRVAVSKGHPIIAI--P-HDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred ceEEEeeecccc-----CcceeeecCCc-cceeEeecCCceEEe--c-cCCceEEEEecCCCccccCC
Confidence 689999998621 23344433221 222555555667776 4 44445999999999987774
No 152
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=33.30 E-value=5.7e+02 Score=26.54 Aligned_cols=120 Identities=17% Similarity=0.116 Sum_probs=66.5
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe--cCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEE
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV--MMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i--~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~i 262 (355)
.+...|.+-+++... ..|-.|++.++.-+.- .-| ..- ..-..|+.-+ +++.+.+..++ -+..
T Consensus 455 ~vs~CGNF~~IG~S~--------G~Id~fNmQSGi~r~sf~~~~-ah~--~~V~gla~D~~n~~~vsa~~~G----ilkf 519 (910)
T KOG1539|consen 455 CVSFCGNFVFIGYSK--------GTIDRFNMQSGIHRKSFGDSP-AHK--GEVTGLAVDGTNRLLVSAGADG----ILKF 519 (910)
T ss_pred EEeccCceEEEeccC--------CeEEEEEcccCeeecccccCc-ccc--CceeEEEecCCCceEEEccCcc----eEEE
Confidence 455677777776665 6899999987755331 333 211 1112233333 57777666664 8888
Q ss_pred EEeccCCCCCCeEEEEEecCCCc-----------------------------------eeEeEEEeeCCcEEEEEEeeCC
Q 018497 263 WVMKEYGLTESWTKLYTIEKPQR-----------------------------------IWWPLGFTERGKIFIRGECRHG 307 (355)
Q Consensus 263 W~l~~~~~~~~W~~~~~i~~~~~-----------------------------------~~~~~~~~~~g~i~~~~~~~~~ 307 (355)
|.++...-...|..-..+..... ...-+.+..+|+=++. ...|
T Consensus 520 w~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis--asmD 597 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS--ASMD 597 (910)
T ss_pred EecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE--eecC
Confidence 98876322234444333322111 1233445566754444 3245
Q ss_pred ceEEEEEeCCCCeEEE
Q 018497 308 GYGLLVYNPHSDTFKC 323 (355)
Q Consensus 308 ~~~l~~yd~~t~~~~~ 323 (355)
+ ++.+||+-|..+-.
T Consensus 598 ~-tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 598 S-TIRTWDLPTGTLID 612 (910)
T ss_pred C-cEEEEeccCcceee
Confidence 5 59999999988744
No 153
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=33.14 E-value=3.3e+02 Score=23.74 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=49.5
Q ss_pred EEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEec-cCCCCCCeEEEEEecCCCceeE
Q 018497 210 LIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMK-EYGLTESWTKLYTIEKPQRIWW 288 (355)
Q Consensus 210 ~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~-~~~~~~~W~~~~~i~~~~~~~~ 288 (355)
.+.......+.|..=++| + +.+..+...... ..-+|... ++.....|..++.++.......
T Consensus 11 ~~~~~~~~~GsWmrDpl~-~-------------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg 72 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLP-A-------------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTG 72 (249)
T ss_pred EEEeeccccceeecCCCc-c-------------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccc
Confidence 555566666777776777 3 233334322221 11122222 1123467999999987652111
Q ss_pred eEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 289 PLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 289 ~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
.+.=+|.+++. . .+.+.++.||+++...
T Consensus 73 --~VVynGs~yyn--k-~~t~~ivky~l~~~~~ 100 (249)
T KOG3545|consen 73 --HVVYNGSLYYN--K-AGTRNIIKYDLETRTV 100 (249)
T ss_pred --eEEEcceEEee--c-cCCcceEEEEeeccee
Confidence 12235778887 5 4444699999999554
No 154
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=33.05 E-value=4.4e+02 Score=26.12 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccC
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 268 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~ 268 (355)
+--||..+... .+..|+++.++|-. +..- ...-+.+.+.++.| |..++..+ ..++.|-..+-
T Consensus 145 scDly~~gsg~---------evYRlNLEqGrfL~P~~~~---~~~lN~v~in~~hg-Lla~Gt~~----g~VEfwDpR~k 207 (703)
T KOG2321|consen 145 SCDLYLVGSGS---------EVYRLNLEQGRFLNPFETD---SGELNVVSINEEHG-LLACGTED----GVVEFWDPRDK 207 (703)
T ss_pred CccEEEeecCc---------ceEEEEccccccccccccc---cccceeeeecCccc-eEEecccC----ceEEEecchhh
Confidence 33466665554 78999999998842 2211 11113334444445 33444444 48899987652
Q ss_pred CCCCCeEEEE--EecCCCc-----eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 269 GLTESWTKLY--TIEKPQR-----IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 269 ~~~~~W~~~~--~i~~~~~-----~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
..-. ++-+ .++.... ....+.+.++|.-+-+|+ ..| .++.||+++.+=..+
T Consensus 208 srv~--~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt--s~G-~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 208 SRVG--TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT--STG-SVLIYDLRASKPLLV 265 (703)
T ss_pred hhhe--eeecccccCCCccccccCcceEEEecCCceeEEeec--cCC-cEEEEEcccCCceee
Confidence 1000 1111 1111111 233455555675555532 456 499999998765444
No 155
>PRK00178 tolB translocation protein TolB; Provisional
Probab=32.42 E-value=4.3e+02 Score=24.84 Aligned_cols=115 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccC
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEY 268 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~ 268 (355)
+..+.+..... ....|..+|+.+++-+.+ ..+ ... ..+....-+.+|++....++ ..+||.++-.
T Consensus 210 G~~la~~s~~~------~~~~l~~~~l~~g~~~~l~~~~-g~~---~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~ 275 (430)
T PRK00178 210 GKRIAYVSFEQ------KRPRIFVQNLDTGRREQITNFE-GLN---GAPAWSPDGSKLAFVLSKDG----NPEIYVMDLA 275 (430)
T ss_pred CCEEEEEEcCC------CCCEEEEEECCCCCEEEccCCC-CCc---CCeEECCCCCEEEEEEccCC----CceEEEEECC
Q ss_pred CCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCce-EEEEEeCCCCeEEEE
Q 018497 269 GLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGY-GLLVYNPHSDTFKCI 324 (355)
Q Consensus 269 ~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~-~l~~yd~~t~~~~~v 324 (355)
+ ....++..-.... ..|...-+...|++. ...++. .++.+|+.+++.+.+
T Consensus 276 ~--~~~~~lt~~~~~~--~~~~~spDg~~i~f~--s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 276 S--RQLSRVTNHPAID--TEPFWGKDGRTLYFT--SDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred C--CCeEEcccCCCCc--CCeEECCCCCEEEEE--ECCCCCceEEEEECCCCCEEEe
No 156
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=31.77 E-value=2.2e+02 Score=27.65 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=44.3
Q ss_pred EECCeEEEEEecCCCCccEEEEEEeccCCC-CCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEee----CCceEEEEEe
Q 018497 241 VFDGYLCVFATIPNNTFRSYELWVMKEYGL-TESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECR----HGGYGLLVYN 315 (355)
Q Consensus 241 ~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~----~~~~~l~~yd 315 (355)
..+|+..+-.+.+ ..+.+|-|..... -..|+-+.+.-. ..-.++..+.+|++.|+.- ..+ .|+.||
T Consensus 373 S~dg~~LlSRg~D----~tLKvWDLrq~kkpL~~~tgL~t~~~----~tdc~FSPd~kli~TGtS~~~~~~~g-~L~f~d 443 (641)
T KOG0772|consen 373 SYDGNYLLSRGFD----DTLKVWDLRQFKKPLNVRTGLPTPFP----GTDCCFSPDDKLILTGTSAPNGMTAG-TLFFFD 443 (641)
T ss_pred ccccchhhhccCC----CceeeeeccccccchhhhcCCCccCC----CCccccCCCceEEEecccccCCCCCc-eEEEEe
Confidence 3445555544444 5999999986421 123443322111 2235667778899985431 123 699999
Q ss_pred CCC-CeEEEEEEec
Q 018497 316 PHS-DTFKCIGVHL 328 (355)
Q Consensus 316 ~~t-~~~~~v~~~~ 328 (355)
..| +++.+|.+.+
T Consensus 444 ~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 444 RMTLDTVYKIDIST 457 (641)
T ss_pred ccceeeEEEecCCC
Confidence 877 3345665553
No 157
>PF15408 PH_7: Pleckstrin homology domain
Probab=31.32 E-value=20 Score=25.24 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.8
Q ss_pred ccchhhcccchhhHhhhCChHHHH
Q 018497 23 KNLARLRCVCKSWNTLLTSKTFVE 46 (355)
Q Consensus 23 ~~l~r~r~VcK~W~~li~~~~F~~ 46 (355)
+.....+-|||.|-..+.+|.|.-
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 344456779999999999999853
No 158
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=29.93 E-value=1.1e+02 Score=17.08 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=23.2
Q ss_pred eEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEe
Q 018497 274 WTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYN 315 (355)
Q Consensus 274 W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd 315 (355)
|+.+.++.........+.+..++..++. ...++ .+.+||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s--~~~D~-~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLAS--GSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEE--EETTS-EEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccccccee--eCCCC-EEEEEC
Confidence 4555555444334555667777777776 43566 477776
No 159
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.79 E-value=3.3e+02 Score=23.17 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=44.1
Q ss_pred ceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEE--EEE-ecC-------CCceeEeEEEeeCCcEEEEEEee
Q 018497 236 DKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTK--LYT-IEK-------PQRIWWPLGFTERGKIFIRGECR 305 (355)
Q Consensus 236 ~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~-i~~-------~~~~~~~~~~~~~g~i~~~~~~~ 305 (355)
.+...+++|...++-... ..+.+|-++... -.... +.. +.. ......-+.++.+|..++. .
T Consensus 14 ~~~~l~~~~~~Ll~iT~~----G~l~vWnl~~~k--~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~--l- 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSS----GLLYVWNLKKGK--AVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT--L- 84 (219)
T ss_pred ceEEEEeCCCEEEEEeCC----CeEEEEECCCCe--eccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE--E-
Confidence 344456666554444433 499999988621 10111 000 000 0002333555677866665 4
Q ss_pred CCceEEEEEeCCCCeEEEEE
Q 018497 306 HGGYGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 306 ~~~~~l~~yd~~t~~~~~v~ 325 (355)
.+++ .|.||.+-+.|.+|-
T Consensus 85 sng~-~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 85 SNGD-SYSYSPDLGCWIRVS 103 (219)
T ss_pred eCCC-EEEeccccceeEEec
Confidence 4564 899999999999884
No 160
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.18 E-value=98 Score=16.43 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=8.3
Q ss_pred EEEeeCCcEEEE
Q 018497 290 LGFTERGKIFIR 301 (355)
Q Consensus 290 ~~~~~~g~i~~~ 301 (355)
+++..+|.|++.
T Consensus 7 vav~~~g~i~Va 18 (28)
T PF01436_consen 7 VAVDSDGNIYVA 18 (28)
T ss_dssp EEEETTSEEEEE
T ss_pred EEEeCCCCEEEE
Confidence 455567788887
No 161
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.95 E-value=4.4e+02 Score=25.15 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=55.0
Q ss_pred cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEECC-eEEEEEecCCCCccEEEEEEeccCCCCCCeEE--EEEecCCC
Q 018497 209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFDG-YLCVFATIPNNTFRSYELWVMKEYGLTESWTK--LYTIEKPQ 284 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~--~~~i~~~~ 284 (355)
..|...|+.++.-..+ ..+ ... ..+.. .-+| +|.++...+ ....||+++-.+. ..+.+ -..++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~---~~P~f-spDG~~l~f~~~rd----g~~~iy~~dl~~~-~~~~Lt~~~gi~--- 284 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNN---GAPAF-SPDGSKLAFSSSRD----GSPDIYLMDLDGK-NLPRLTNGFGIN--- 284 (425)
T ss_pred ceEEEEeccCCccceeeccC-Ccc---CCccC-CCCCCEEEEEECCC----CCccEEEEcCCCC-cceecccCCccc---
Confidence 3577777776665544 433 211 11111 1234 444444433 4888999987642 22221 11111
Q ss_pred ceeEeEEEeeCC-cEEEEEEeeCCce-EEEEEeCCCCeEEEEEEec
Q 018497 285 RIWWPLGFTERG-KIFIRGECRHGGY-GLLVYNPHSDTFKCIGVHL 328 (355)
Q Consensus 285 ~~~~~~~~~~~g-~i~~~~~~~~~~~-~l~~yd~~t~~~~~v~~~~ 328 (355)
..|. ...+| .|+|. ....++ .++.||++++..+.+-..+
T Consensus 285 --~~Ps-~spdG~~ivf~--Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 285 --TSPS-WSPDGSKIVFT--SDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred --cCcc-CCCCCCEEEEE--eCCCCCcceEEECCCCCceeEeeccC
Confidence 2222 24566 78887 523333 7999999999998885543
No 162
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=27.56 E-value=1e+02 Score=20.38 Aligned_cols=16 Identities=6% Similarity=0.250 Sum_probs=13.9
Q ss_pred EEEEEeCCCCeEEEEE
Q 018497 310 GLLVYNPHSDTFKCIG 325 (355)
Q Consensus 310 ~l~~yd~~t~~~~~v~ 325 (355)
++|.||++|+++.-+.
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 6999999999987763
No 163
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=27.02 E-value=54 Score=17.13 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=13.0
Q ss_pred EEEcCCcccEEecCCC
Q 018497 118 YLWNPLIKKYMTLPRP 133 (355)
Q Consensus 118 ~V~NP~T~~~~~LP~~ 133 (355)
.|||.+++.|+..+..
T Consensus 7 ~iwn~~~~~~vvvsE~ 22 (24)
T PF13018_consen 7 LIWNKARGTWVVVSEL 22 (24)
T ss_pred EEEECCCCeEEEEeee
Confidence 6899999999877653
No 164
>PLN02772 guanylate kinase
Probab=26.81 E-value=3.9e+02 Score=25.20 Aligned_cols=81 Identities=9% Similarity=0.118 Sum_probs=49.5
Q ss_pred eEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe---cCCCceeEeEEEeeCCcEEEEEEeeCC--ceEE
Q 018497 237 KYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI---EKPQRIWWPLGFTERGKIFIRGECRHG--GYGL 311 (355)
Q Consensus 237 ~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i---~~~~~~~~~~~~~~~g~i~~~~~~~~~--~~~l 311 (355)
-..++.++++|++++..+.......+|.++.. ...|..-... |.+. .....++..+++|++. .+.. .+.+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~--t~~W~~P~V~G~~P~~r-~GhSa~v~~~~rilv~--~~~~~~~~~~ 102 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI--TNNWVSPIVLGTGPKPC-KGYSAVVLNKDRILVI--KKGSAPDDSI 102 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECC--CCcEecccccCCCCCCC-CcceEEEECCceEEEE--eCCCCCccce
Confidence 45678889999999765422246789999863 4679875433 3333 2334445566788888 4111 1246
Q ss_pred EEEeCCCCeEE
Q 018497 312 LVYNPHSDTFK 322 (355)
Q Consensus 312 ~~yd~~t~~~~ 322 (355)
....+.|.-++
T Consensus 103 w~l~~~t~~~~ 113 (398)
T PLN02772 103 WFLEVDTPFVR 113 (398)
T ss_pred EEEEcCCHHHH
Confidence 66677765443
No 165
>PTZ00334 trans-sialidase; Provisional
Probab=26.32 E-value=7.4e+02 Score=25.80 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=49.6
Q ss_pred eeEe-CceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEE
Q 018497 186 SVFL-NGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYEL 262 (355)
Q Consensus 186 ~v~~-~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~i 262 (355)
+|.. ||.|-+-.... ........++.|-.+++.|..- .+|...+ ..+.+++.+ |+|.|+...++ ..-+|
T Consensus 265 GI~medGTLVFPv~a~--~~~g~~vslIiYS~d~g~W~ls~g~s~~gC---~~P~I~EWe~gkLlM~t~C~d---G~RrV 336 (780)
T PTZ00334 265 GVQMKDGTLVFPVEGT--KKDGKAVSLIIYSSATESGNLSKGMSADGC---SDPSVVEWKEGKLMMMTACDD---GRRRV 336 (780)
T ss_pred eEEecCCeEEEEEEEE--cCCCCEEEEEEEecCCCCeEEcCCCCCCCC---CCCEEEEEcCCeEEEEEEeCC---CCEEE
Confidence 4444 77766643322 1123345677887777789654 2331222 567899997 99999888765 34456
Q ss_pred EEeccCCCCCCeEE
Q 018497 263 WVMKEYGLTESWTK 276 (355)
Q Consensus 263 W~l~~~~~~~~W~~ 276 (355)
++=.|- ...|++
T Consensus 337 YES~Dm--G~tWtE 348 (780)
T PTZ00334 337 YESGDK--GDSWTE 348 (780)
T ss_pred EEECCC--CCChhh
Confidence 666553 356876
No 166
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.88 E-value=5e+02 Score=23.54 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=29.2
Q ss_pred CceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec
Q 018497 235 ADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE 281 (355)
Q Consensus 235 ~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~ 281 (355)
..+..+...-.|-++..... ..++|++.-+-.+-..|.+++.|.
T Consensus 116 ~DV~FaP~hlGLklA~~~aD---G~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASAD---GILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eEEEecchhcceEEEEeccC---cEEEEEecCCccccccchhhhhhh
Confidence 44455555544555555444 589999988765557899998886
No 167
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.25 E-value=2.8e+02 Score=20.34 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=31.5
Q ss_pred ceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEEEE-EEcCCC
Q 018497 115 SLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFKVV-YSLRSN 163 (355)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~ykvv-yss~t~ 163 (355)
.++++.+|.+++|...- .....+.+..|+. .+.|.++ ++..++
T Consensus 9 a~v~~~~~~~~~W~~~~---~~~g~v~~~~d~~---~~~y~i~~~~~~~~ 52 (104)
T cd00837 9 AQVYTADPSTGKWVPAS---GGTGAVSLVKDST---RNTYRIRGVDIQDQ 52 (104)
T ss_pred EEEEEECCCCCceEECC---CCeEEEEEEEECC---CCEEEEEEEecCCC
Confidence 46889999999998642 2223377888888 8889888 777753
No 168
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=25.14 E-value=5.2e+02 Score=23.40 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=39.1
Q ss_pred cEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCC
Q 018497 209 WLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQ 284 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~ 284 (355)
..+-.+|+.+++-+.+.+. +... ...+.+...+.-|++++.-+ .+++.|-+... ..+.++.++.
T Consensus 94 k~~k~wDL~S~Q~~~v~~H-d~pv--kt~~wv~~~~~~cl~TGSWD---KTlKfWD~R~~------~pv~t~~LPe 157 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAH-DAPV--KTCHWVPGMNYQCLVTGSWD---KTLKFWDTRSS------NPVATLQLPE 157 (347)
T ss_pred CceEEEEccCCCeeeeeec-ccce--eEEEEecCCCcceeEecccc---cceeecccCCC------Ceeeeeeccc
Confidence 4788899999988887554 3221 12222333334477777654 58999988742 3456666554
No 169
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.05 E-value=5.2e+02 Score=23.40 Aligned_cols=200 Identities=14% Similarity=0.173 Sum_probs=99.0
Q ss_pred EEEeecCCCCceEEEEcCCcccEEecCCCCCCCceeEEEEecCCCCCCcEE------------EE--EEcCCCceeEecc
Q 018497 105 LCFCSNGSDRSLIYLWNPLIKKYMTLPRPSLNPRYLGFGVNSVSGHLDDFK------------VV--YSLRSNSWKNIAY 170 (355)
Q Consensus 105 l~l~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~g~d~~~~~~~~yk------------vv--yss~t~~W~~~~~ 170 (355)
|.+... ...-.+|+|+.|++....-..+..+.++|=|.-.. .+.+- +| ||.. +..+.+.
T Consensus 20 vafaRR--PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~---dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~- 92 (305)
T PF07433_consen 20 VAFARR--PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP---DGRLLYTTENDYETGRGVIGVYDAA-RGYRRIG- 92 (305)
T ss_pred EEEEeC--CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC---CCCEEEEeccccCCCcEEEEEEECc-CCcEEEe-
Confidence 455552 45567899999998875444455555533332111 11111 11 7766 4444444
Q ss_pred CCC------ceeeecc--ccccceeEeCceEEEEEee-e-ccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEE
Q 018497 171 GFP------RSIEINR--SHINSSVFLNGSVHWCARF-S-CYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYL 239 (355)
Q Consensus 171 ~~p------~~~~~~~--~~~~~~v~~~G~lyw~~~~-~-~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L 239 (355)
..+ +...... .. =|+-||=+.-.... + +.+=..-+-.+.-+|..+.+. ....+| ........-.|
T Consensus 93 E~~s~GIGPHel~l~pDG~t---LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lSiRHL 168 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGET---LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLSIRHL 168 (305)
T ss_pred EecCCCcChhhEEEcCCCCE---EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccceeeE
Confidence 222 2221111 11 24444444332111 0 000023345677788888876 444787 54433334566
Q ss_pred EEEC-CeEEEEEecCCC---CccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEeEEEeeCCc-EEEEEEeeCCce
Q 018497 240 NVFD-GYLCVFATIPNN---TFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTERGK-IFIRGECRHGGY 309 (355)
Q Consensus 240 ~~~~-G~L~~v~~~~~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~g~-i~~~~~~~~~~~ 309 (355)
+... |.+++.....+. ...-+-++.... . .....++.... +...+++..+|. |.+. +...+
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-----~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t--sPrGg- 239 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-----A-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT--SPRGG- 239 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC-----c-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEE--CCCCC-
Confidence 6555 666666655431 112233333222 1 11122221111 677888888875 5455 43455
Q ss_pred EEEEEeCCCCeEEEE
Q 018497 310 GLLVYNPHSDTFKCI 324 (355)
Q Consensus 310 ~l~~yd~~t~~~~~v 324 (355)
.+.++|..++++...
T Consensus 240 ~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 240 RVAVWDAATGRLLGS 254 (305)
T ss_pred EEEEEECCCCCEeec
Confidence 599999999998665
No 170
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=24.94 E-value=1.3e+02 Score=20.62 Aligned_cols=12 Identities=0% Similarity=0.307 Sum_probs=9.7
Q ss_pred EEcCCCceeEec
Q 018497 158 YSLRSNSWKNIA 169 (355)
Q Consensus 158 yss~t~~W~~~~ 169 (355)
||.+||+.-++.
T Consensus 34 fDPETGqYVeV~ 45 (75)
T PF15232_consen 34 FDPETGQYVEVL 45 (75)
T ss_pred ecCCCCcEEEEe
Confidence 888888887776
No 171
>PRK04792 tolB translocation protein TolB; Provisional
Probab=24.90 E-value=6.1e+02 Score=24.19 Aligned_cols=180 Identities=9% Similarity=0.020 Sum_probs=88.7
Q ss_pred CCceEEEEcCCcccEEecCCCCCCC---c------eeEEEEecCCCCCCcEEEE-EEcCCCceeEeccCCCceeeecccc
Q 018497 113 DRSLIYLWNPLIKKYMTLPRPSLNP---R------YLGFGVNSVSGHLDDFKVV-YSLRSNSWKNIAYGFPRSIEINRSH 182 (355)
Q Consensus 113 ~~~~~~V~NP~T~~~~~LP~~~~~~---~------~~~~g~d~~~~~~~~ykvv-yss~t~~W~~~~~~~p~~~~~~~~~ 182 (355)
....++++|..|++...+...+... . .+.+..+. .+...|. ++.+++..+.+. ...... ...
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~----~g~~~Iy~~dl~tg~~~~lt-~~~~~~--~~p- 311 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSK----DGQPEIYVVDIATKALTRIT-RHRAID--TEP- 311 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeC----CCCeEEEEEECCCCCeEECc-cCCCCc--cce-
Confidence 3457999999998877765433221 1 12222222 2233444 788888877665 211100 000
Q ss_pred ccceeEeCce-EEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCCCCCCCceEEEEECC-eEEEEEecCCCCccEE
Q 018497 183 INSSVFLNGS-VHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDLSTDDADKYLNVFDG-YLCVFATIPNNTFRSY 260 (355)
Q Consensus 183 ~~~~v~~~G~-lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~l 260 (355)
...-||. +++..... ....|..+|+.+.+...+... .... ..... .-+| .|++... .. ...
T Consensus 312 ---~wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~~~~Lt~~-g~~~--~~~~~-SpDG~~l~~~~~-~~---g~~ 374 (448)
T PRK04792 312 ---SWHPDGKSLIFTSERG------GKPQIYRVNLASGKVSRLTFE-GEQN--LGGSI-TPDGRSMIMVNR-TN---GKF 374 (448)
T ss_pred ---EECCCCCEEEEEECCC------CCceEEEEECCCCCEEEEecC-CCCC--cCeeE-CCCCCEEEEEEe-cC---Cce
Confidence 2223553 44443221 235789999988887766322 1111 11222 2245 4444443 33 467
Q ss_pred EEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCC-cEEEEEEeeCCc-eEEEEEeCCCCeEEEEE
Q 018497 261 ELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERG-KIFIRGECRHGG-YGLLVYNPHSDTFKCIG 325 (355)
Q Consensus 261 ~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~i~~~~~~~~~~-~~l~~yd~~t~~~~~v~ 325 (355)
.||.++-.+ .....+. .......| .+..+| .|++. ...++ ..++.+|.+.+..+.+.
T Consensus 375 ~I~~~dl~~--g~~~~lt---~~~~d~~p-s~spdG~~I~~~--~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 375 NIARQDLET--GAMQVLT---STRLDESP-SVAPNGTMVIYS--TTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred EEEEEECCC--CCeEEcc---CCCCCCCc-eECCCCCEEEEE--EecCCceEEEEEECCCCceEECc
Confidence 888887432 2222221 11111223 355667 45555 31222 25788888766656554
No 172
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=24.85 E-value=7.4e+02 Score=25.15 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=35.8
Q ss_pred cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEE
Q 018497 209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKL 277 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~ 277 (355)
..|..|--.+++|+.+ .+- .+.+--........+ +.++++....+ ..++||.+...+..++|...
T Consensus 169 ~~v~~~s~~~d~f~~v~el~-GH~DWIrsl~f~~~~~~~~~laS~SQD---~yIRiW~i~~~~~~~~~~~e 235 (764)
T KOG1063|consen 169 FVVDLYSSSADSFARVAELE-GHTDWIRSLAFARLGGDDLLLASSSQD---RYIRIWRIVLGDDEDSNERE 235 (764)
T ss_pred eEEEEeccCCcceeEEEEee-ccchhhhhhhhhccCCCcEEEEecCCc---eEEEEEEEEecCCccccccc
Confidence 3444455556677665 443 322110122233334 47888887766 69999999754433456653
No 173
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.73 E-value=3e+02 Score=26.72 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=34.7
Q ss_pred cEEEEEEcCCceeeEe-cCCCCCCCCCCceEEE-EECCeEEEEEecCCCCccEEEEEEecc
Q 018497 209 WLIVSFDFAKEIFQTV-MMPYDLSTDDADKYLN-VFDGYLCVFATIPNNTFRSYELWVMKE 267 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~i-~lP~~~~~~~~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~~ 267 (355)
..+-..|+.+.+-+.- +++ .... ....|+ .-+-+||+.+..++ ++.||-|.+
T Consensus 487 stlsiWDLAapTprikaelt-ssap--aCyALa~spDakvcFsccsdG----nI~vwDLhn 540 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELT-SSAP--ACYALAISPDAKVCFSCCSDG----NIAVWDLHN 540 (705)
T ss_pred ceeeeeeccCCCcchhhhcC-Ccch--hhhhhhcCCccceeeeeccCC----cEEEEEccc
Confidence 4677888888776654 454 2221 233444 44568999988875 899999986
No 174
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.02 E-value=1.3e+02 Score=17.08 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=16.6
Q ss_pred EeCceEEEEEeeeccCCCCCCcEEEEEEcCC
Q 018497 188 FLNGSVHWCARFSCYHDNSCPWLIVSFDFAK 218 (355)
Q Consensus 188 ~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~ 218 (355)
..++.+||..... ..|.+.+++.
T Consensus 18 ~~~~~lYw~D~~~--------~~I~~~~~~g 40 (43)
T smart00135 18 WIEGRLYWTDWGL--------DVIEVANLDG 40 (43)
T ss_pred ecCCEEEEEeCCC--------CEEEEEeCCC
Confidence 4567899987654 6788877754
No 175
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.91 E-value=5.9e+02 Score=23.64 Aligned_cols=100 Identities=14% Similarity=0.007 Sum_probs=52.5
Q ss_pred cEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEE-CCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497 209 WLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVF-DGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 286 (355)
Q Consensus 209 ~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 286 (355)
..+..+|..+.+. ..|+.. .. ....+... +|+..++...+ ..+.++-+.. ...+.+|.... .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~-~~----~h~~~~~s~Dgr~~yv~~rd----g~vsviD~~~------~~~v~~i~~G~-~ 79 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG-GA----PHAGLKFSPDGRYLYVANRD----GTVSVIDLAT------GKVVATIKVGG-N 79 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S-TT----EEEEEE-TT-SSEEEEEETT----SEEEEEETTS------SSEEEEEE-SS-E
T ss_pred CEEEEEECCCCeEEEEEcCC-CC----ceeEEEecCCCCEEEEEcCC----CeEEEEECCc------ccEEEEEecCC-C
Confidence 6889999887654 555544 21 12233333 36644444443 3777776654 23566666544 2
Q ss_pred eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE-EEEEE
Q 018497 287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF-KCIGV 326 (355)
Q Consensus 287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~-~~v~~ 326 (355)
..-++++.+|+.++++ ....+ .+.++|.+|.+. +.|..
T Consensus 80 ~~~i~~s~DG~~~~v~-n~~~~-~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVA-NYEPG-TVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEEEE--TTTEEEEE-EEETT-EEEEEETTT--EEEEEE-
T ss_pred cceEEEcCCCCEEEEE-ecCCC-ceeEeccccccceeeccc
Confidence 3446677888766652 21345 599999998765 44543
No 176
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.80 E-value=65 Score=28.32 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHhcCC-cccchhhcccchhhHhhhCC
Q 018497 6 FRLPEDVMIDIFLRLE-VKNLARLRCVCKSWNTLLTS 41 (355)
Q Consensus 6 ~~LP~dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~ 41 (355)
.+||.+++.+||.||| =.+|..+.-|-..-..++.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 5899999999999999 57888777765555555544
No 177
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.52 E-value=3e+02 Score=26.70 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEec----CCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEe
Q 018497 240 NVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIE----KPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYN 315 (355)
Q Consensus 240 ~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~----~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd 315 (355)
+..+|++++...... +..++....+..|....... .......++.+..++.||+. . .++. ++.+|
T Consensus 58 vv~~g~vy~~~~~g~-------l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~--~-~~g~-v~AlD 126 (488)
T cd00216 58 LVVDGDMYFTTSHSA-------LFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG--T-FDGR-LVALD 126 (488)
T ss_pred EEECCEEEEeCCCCc-------EEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe--c-CCCe-EEEEE
Q ss_pred CCCCeEEE
Q 018497 316 PHSDTFKC 323 (355)
Q Consensus 316 ~~t~~~~~ 323 (355)
.+|++...
T Consensus 127 ~~TG~~~W 134 (488)
T cd00216 127 AETGKQVW 134 (488)
T ss_pred CCCCCEee
No 178
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.37 E-value=5.9e+02 Score=23.43 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=59.8
Q ss_pred cEEEEE--EcCCceeeEe----cCCCCCCCCC-CceEEE-EECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEe
Q 018497 209 WLIVSF--DFAKEIFQTV----MMPYDLSTDD-ADKYLN-VFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTI 280 (355)
Q Consensus 209 ~~Il~f--D~~~~~~~~i----~lP~~~~~~~-~~~~L~-~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 280 (355)
..|.++ |....++..+ -+| ...... ....+- .-+|+..++..... ..+.+..+++.+ ..=..+...
T Consensus 213 stV~v~~y~~~~g~~~~lQ~i~tlP-~dF~g~~~~aaIhis~dGrFLYasNRg~---dsI~~f~V~~~~--g~L~~~~~~ 286 (346)
T COG2706 213 STVDVLEYNPAVGKFEELQTIDTLP-EDFTGTNWAAAIHISPDGRFLYASNRGH---DSIAVFSVDPDG--GKLELVGIT 286 (346)
T ss_pred CEEEEEEEcCCCceEEEeeeeccCc-cccCCCCceeEEEECCCCCEEEEecCCC---CeEEEEEEcCCC--CEEEEEEEe
Confidence 345555 4545777665 577 665432 333333 33466655554443 355555555543 223333344
Q ss_pred cCCCceeEeEEEeeCCcEEEEEEeeCCce--EEEEEeCCCCeEEEEEE
Q 018497 281 EKPQRIWWPLGFTERGKIFIRGECRHGGY--GLLVYNPHSDTFKCIGV 326 (355)
Q Consensus 281 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~--~l~~yd~~t~~~~~v~~ 326 (355)
+....+.+-+.+...|+++++ ...+.. .+|.-|.+|+++..+..
T Consensus 287 ~teg~~PR~F~i~~~g~~Lia--a~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIA--ANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ccCCcCCccceeCCCCCEEEE--EccCCCcEEEEEEcCCCceEEeccc
Confidence 433323445666677777766 412222 67777999999988754
No 179
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=22.64 E-value=7.1e+02 Score=24.14 Aligned_cols=142 Identities=11% Similarity=0.011 Sum_probs=75.0
Q ss_pred EEcCCCceeEeccCCCceeee-----ccccc--cceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEecCCCCC
Q 018497 158 YSLRSNSWKNIAYGFPRSIEI-----NRSHI--NSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVMMPYDL 230 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~~~-----~~~~~--~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~lP~~~ 230 (355)
|+.++++=+.+...+|..... ...++ ..-..++|-++.+...+ ....++.-.+-.-.+.-+
T Consensus 292 ydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG---------kaFi~~~~~~~~iqv~~~--- 359 (668)
T COG4946 292 YDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG---------KAFIMRPWDGYSIQVGKK--- 359 (668)
T ss_pred eCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC---------cEEEECCCCCeeEEcCCC---
Confidence 888888888887666654221 11000 01345788888887765 556666554433333222
Q ss_pred CCCCCceEEEEECCeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceE
Q 018497 231 STDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYG 310 (355)
Q Consensus 231 ~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~ 310 (355)
... ...++......+ +++..++ ..+.|.-.+.. =.++..-++. ....+++..+|+-+++ . ++.-.
T Consensus 360 ~~V-rY~r~~~~~e~~-vigt~dg---D~l~iyd~~~~-----e~kr~e~~lg--~I~av~vs~dGK~~vv--a-Ndr~e 424 (668)
T COG4946 360 GGV-RYRRIQVDPEGD-VIGTNDG---DKLGIYDKDGG-----EVKRIEKDLG--NIEAVKVSPDGKKVVV--A-NDRFE 424 (668)
T ss_pred Cce-EEEEEccCCcce-EEeccCC---ceEEEEecCCc-----eEEEeeCCcc--ceEEEEEcCCCcEEEE--E-cCceE
Confidence 211 112222222322 3333333 46776655431 1222222222 2555777888874444 3 33325
Q ss_pred EEEEeCCCCeEEEEEE
Q 018497 311 LLVYNPHSDTFKCIGV 326 (355)
Q Consensus 311 l~~yd~~t~~~~~v~~ 326 (355)
+.++|.++++.+.++-
T Consensus 425 l~vididngnv~~idk 440 (668)
T COG4946 425 LWVIDIDNGNVRLIDK 440 (668)
T ss_pred EEEEEecCCCeeEecc
Confidence 9999999999998853
No 180
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.48 E-value=57 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=17.2
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcC
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFA 217 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~ 217 (355)
-+.-+|.|||+.... ...+-.|+.||..
T Consensus 43 Ell~GGSlYWVikg~----i~~RQ~Il~i~~~ 70 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQ----IQCRQRILDIEEV 70 (137)
T ss_pred HhccCCcEEEEECCE----EEEeeeeeeeeEe
Confidence 455589999998664 1223346666644
No 181
>smart00284 OLF Olfactomedin-like domains.
Probab=22.24 E-value=5.4e+02 Score=22.60 Aligned_cols=48 Identities=4% Similarity=-0.005 Sum_probs=31.7
Q ss_pred CCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEEE
Q 018497 272 ESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKCI 324 (355)
Q Consensus 272 ~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~v 324 (355)
..+.+.+.++... ...-.+.-+|.+|+. . .....++.||+++++....
T Consensus 62 ~~~~~~~~Lp~~~--~GtG~VVYngslYY~--~-~~s~~iiKydL~t~~v~~~ 109 (255)
T smart00284 62 GKNPTDHPLPHAG--QGTGVVVYNGSLYFN--K-FNSHDICRFDLTTETYQKE 109 (255)
T ss_pred cCCceEEECCCcc--ccccEEEECceEEEE--e-cCCccEEEEECCCCcEEEE
Confidence 4577777777542 222233346778887 5 3434699999999999644
No 182
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.14 E-value=4.2e+02 Score=23.16 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=33.0
Q ss_pred eeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCcee-eEecCCCCCCCCCCceEEEEECCe
Q 018497 186 SVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIF-QTVMMPYDLSTDDADKYLNVFDGY 245 (355)
Q Consensus 186 ~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~-~~i~lP~~~~~~~~~~~L~~~~G~ 245 (355)
.+--.|.||....+. ..+..+|+.+++. .+|.+| ... ..-+..+|+
T Consensus 218 ~ID~eG~L~Va~~ng--------~~V~~~dp~tGK~L~eiklP-t~q-----itsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNG--------GTVQKVDPTTGKILLEIKLP-TPQ-----ITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecC--------cEEEEECCCCCcEEEEEEcC-CCc-----eEEEEecCC
Confidence 344578999988876 6899999999877 677888 432 334445554
No 183
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.80 E-value=8.9e+02 Score=24.97 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred CceEEEEEeeeccCCCCCCcEEEEEEcCCc--eeeEecCCCCCCCCCCceEEEEECCeEEEEEecCCCCccEEEEEEecc
Q 018497 190 NGSVHWCARFSCYHDNSCPWLIVSFDFAKE--IFQTVMMPYDLSTDDADKYLNVFDGYLCVFATIPNNTFRSYELWVMKE 267 (355)
Q Consensus 190 ~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~--~~~~i~lP~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~l~iW~l~~ 267 (355)
+|..-...... .+..+|+++. .-..+.+- ... ..-++..+++.+.++.++.+ ..++||.+..
T Consensus 33 ~Gr~va~~a~E---------~vn~WdlRtge~~~~l~~~~-~k~---evt~l~~~~d~l~lAVGYaD---GsVqif~~~s 96 (888)
T KOG0306|consen 33 KGRAVAVSALE---------QVNIWDLRTGEIEKKLILLK-KKA---EVTCLRSSDDILLLAVGYAD---GSVQIFSLES 96 (888)
T ss_pred CCcEEEEeccc---------cEeEEeeecchhhhhhhhhc-ccc---eEEEeeccCCcceEEEEecC---ceEEeeccCC
Q ss_pred CCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCe
Q 018497 268 YGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDT 320 (355)
Q Consensus 268 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~ 320 (355)
+ +...+++...-....+-+...|.-+.. +..|+. +++||+..++
T Consensus 97 ----~--~~~~tfngHK~AVt~l~fd~~G~rlaS--GskDt~-IIvwDlV~E~ 140 (888)
T KOG0306|consen 97 ----E--EILITFNGHKAAVTTLKFDKIGTRLAS--GSKDTD-IIVWDLVGEE 140 (888)
T ss_pred ----C--ceeeeecccccceEEEEEcccCceEee--cCCCcc-EEEEEeccce
No 184
>PTZ00420 coronin; Provisional
Probab=21.62 E-value=8.1e+02 Score=24.43 Aligned_cols=55 Identities=13% Similarity=0.349 Sum_probs=34.5
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
..+.||-++.. .....+.... ....+.+..+|.++.. ...++ .+.+||+++++..
T Consensus 148 gtIrIWDl~tg------~~~~~i~~~~-~V~SlswspdG~lLat--~s~D~-~IrIwD~Rsg~~i 202 (568)
T PTZ00420 148 SFVNIWDIENE------KRAFQINMPK-KLSSLKWNIKGNLLSG--TCVGK-HMHIIDPRKQEIA 202 (568)
T ss_pred CeEEEEECCCC------cEEEEEecCC-cEEEEEECCCCCEEEE--EecCC-EEEEEECCCCcEE
Confidence 49999998752 1223333222 2445666678877776 42566 4999999988653
No 185
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=21.57 E-value=1.3e+02 Score=22.94 Aligned_cols=20 Identities=0% Similarity=0.130 Sum_probs=17.4
Q ss_pred EEEEEeCCCCeEEEEEEecC
Q 018497 310 GLLVYNPHSDTFKCIGVHLP 329 (355)
Q Consensus 310 ~l~~yd~~t~~~~~v~~~~~ 329 (355)
.++.||..+++|++.++.|.
T Consensus 30 ~vY~f~~~~~~W~K~~iEG~ 49 (122)
T PF06058_consen 30 VVYKFDHETNEWEKTDIEGT 49 (122)
T ss_dssp EEEEEETTTTEEEEEEEEEE
T ss_pred EEEeecCCCCcEeecCcEee
Confidence 57888899999999999874
No 186
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.26 E-value=4.7e+02 Score=21.56 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=47.3
Q ss_pred cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEEC-CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCce
Q 018497 209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFD-GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQRI 286 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~-G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 286 (355)
..|..+|+.+++... +..+ .. ....+.-.. |+..++...+ ..+.+|.++... ....+......
T Consensus 31 g~i~i~~~~~~~~~~~~~~~-~~----~i~~~~~~~~~~~l~~~~~~----~~i~i~~~~~~~------~~~~~~~~~~~ 95 (289)
T cd00200 31 GTIKVWDLETGELLRTLKGH-TG----PVRDVAASADGTYLASGSSD----KTIRLWDLETGE------CVRTLTGHTSY 95 (289)
T ss_pred cEEEEEEeeCCCcEEEEecC-Cc----ceeEEEECCCCCEEEEEcCC----CeEEEEEcCccc------ceEEEeccCCc
Confidence 478888887665322 1211 11 111233333 4444444444 489999987521 11122211111
Q ss_pred eEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 287 WWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 287 ~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
...+.+..++.+++. ...++ .+..||+++++.
T Consensus 96 i~~~~~~~~~~~~~~--~~~~~-~i~~~~~~~~~~ 127 (289)
T cd00200 96 VSSVAFSPDGRILSS--SSRDK-TIKVWDVETGKC 127 (289)
T ss_pred EEEEEEcCCCCEEEE--ecCCC-eEEEEECCCcEE
Confidence 333444555667776 52366 499999986553
No 187
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=21.18 E-value=2.6e+02 Score=26.09 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=30.6
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeE
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTF 321 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~ 321 (355)
.++++|-++-. +..++..-...+...++...||+.+..| + .++ .+..||+++++-
T Consensus 137 ~TvR~WD~~Te------Tp~~t~KgH~~WVlcvawsPDgk~iASG-~-~dg-~I~lwdpktg~~ 191 (480)
T KOG0271|consen 137 TTVRLWDLDTE------TPLFTCKGHKNWVLCVAWSPDGKKIASG-S-KDG-SIRLWDPKTGQQ 191 (480)
T ss_pred ceEEeeccCCC------CcceeecCCccEEEEEEECCCcchhhcc-c-cCC-eEEEecCCCCCc
Confidence 69999988742 1112221111133445556677666662 2 455 488888887653
No 188
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=21.10 E-value=3.3e+02 Score=23.60 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=35.0
Q ss_pred eCceEEEeecCCCCceEEEEcCCcccEEec--CCCCCCC--ceeEEEEecCCCCCCcEEEE
Q 018497 101 CNGVLCFCSNGSDRSLIYLWNPLIKKYMTL--PRPSLNP--RYLGFGVNSVSGHLDDFKVV 157 (355)
Q Consensus 101 ~~GLl~l~~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~--~~~~~g~d~~~~~~~~ykvv 157 (355)
.+|.|.-.. ..+++|..||.|+.-..+ .++.... ..++|=|+|. -...+||
T Consensus 37 a~G~LYgl~---~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~---aDRlRvv 91 (236)
T PF14339_consen 37 ANGQLYGLG---STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPA---ADRLRVV 91 (236)
T ss_pred CCCCEEEEe---CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcc---cCcEEEE
Confidence 466665444 578999999999998777 3332221 2366667787 7788887
No 189
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=21.05 E-value=1.7e+02 Score=28.34 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=72.8
Q ss_pred eeEeCc--eEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec----CCCCCCCCCCceEEEEECCeEEEEEecCC-----
Q 018497 186 SVFLNG--SVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM----MPYDLSTDDADKYLNVFDGYLCVFATIPN----- 254 (355)
Q Consensus 186 ~v~~~G--~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~----lP~~~~~~~~~~~L~~~~G~L~~v~~~~~----- 254 (355)
.|.-.| ++|--++-++ ...-.---+|....+.|+.+. .| ..+.- ....+-++..+|++.+..-+
T Consensus 266 MV~~~~~~CiYLYGGWdG---~~~l~DFW~Y~v~e~~W~~iN~~t~~P-G~RsC-HRMVid~S~~KLYLlG~Y~~sS~r~ 340 (723)
T KOG2437|consen 266 MVIDVQTECVYLYGGWDG---TQDLADFWAYSVKENQWTCINRDTEGP-GARSC-HRMVIDISRRKLYLLGRYLDSSVRN 340 (723)
T ss_pred EEEeCCCcEEEEecCccc---chhHHHHHhhcCCcceeEEeecCCCCC-cchhh-hhhhhhhhHhHHhhhhhcccccccc
Confidence 567666 8888776651 111122457888999999983 44 33311 12233345568888765422
Q ss_pred CCccEEEEEEeccCCCCCCeEEEEEecCCCc-----eeEeEEEeeC-CcEEEEEEeeCCc-----eEEEEEeCCCCeEEE
Q 018497 255 NTFRSYELWVMKEYGLTESWTKLYTIEKPQR-----IWWPLGFTER-GKIFIRGECRHGG-----YGLLVYNPHSDTFKC 323 (355)
Q Consensus 255 ~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-----~~~~~~~~~~-g~i~~~~~~~~~~-----~~l~~yd~~t~~~~~ 323 (355)
....+-++|+++-. +..|..+..-.-+.- +-.-+.+..+ |.||+.|-...+. ..++.||.....|+.
T Consensus 341 ~~s~RsDfW~FDi~--~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 341 SKSLRSDFWRFDID--TNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred ccccccceEEEecC--CceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 12345679999863 467987643222110 2222333322 3466653110111 159999999999876
Q ss_pred E
Q 018497 324 I 324 (355)
Q Consensus 324 v 324 (355)
+
T Consensus 419 l 419 (723)
T KOG2437|consen 419 L 419 (723)
T ss_pred H
Confidence 6
No 190
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.98 E-value=2.7e+02 Score=26.91 Aligned_cols=99 Identities=8% Similarity=0.041 Sum_probs=56.5
Q ss_pred cEEEEEEcCCceeeE-ecCCCCCCCCCCceEEEEEC--CeEEEEEecCCCCccEEEEEEeccCCCCCCeEEEEEecCCCc
Q 018497 209 WLIVSFDFAKEIFQT-VMMPYDLSTDDADKYLNVFD--GYLCVFATIPNNTFRSYELWVMKEYGLTESWTKLYTIEKPQR 285 (355)
Q Consensus 209 ~~Il~fD~~~~~~~~-i~lP~~~~~~~~~~~L~~~~--G~L~~v~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 285 (355)
.-|+...+.++.-+. +..| . +...+|..+. .+..+....++ ..+.+|-.+.-.....|.+.|.-|...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~-s----gqsvRll~ys~skr~lL~~asd~---G~VtlwDv~g~sp~~~~~~~HsAP~~g- 213 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTID-S----GQSVRLLRYSPSKRFLLSIASDK---GAVTLWDVQGMSPIFHASEAHSAPCRG- 213 (673)
T ss_pred CcEEEEecccCccccceecC-C----CCeEEEeecccccceeeEeeccC---CeEEEEeccCCCcccchhhhccCCcCc-
Confidence 356667766654432 2222 1 1233444433 23333333333 589999988654457899999888665
Q ss_pred eeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEE
Q 018497 286 IWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFK 322 (355)
Q Consensus 286 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~ 322 (355)
+++....+.+++. .+.|. ++..||...++..
T Consensus 214 ----icfspsne~l~vs-VG~Dk-ki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 214 ----ICFSPSNEALLVS-VGYDK-KINIYDIRSQAST 244 (673)
T ss_pred ----ceecCCccceEEE-ecccc-eEEEeeccccccc
Confidence 5555444333331 33566 5999999887753
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.89 E-value=66 Score=28.06 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.1
Q ss_pred CCceEEEEcCCcccEEecCC
Q 018497 113 DRSLIYLWNPLIKKYMTLPR 132 (355)
Q Consensus 113 ~~~~~~V~NP~T~~~~~LP~ 132 (355)
++..+.+|||.+++|..||.
T Consensus 200 Dg~~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 200 DGSQAGVWDPATGQWQWLPD 219 (251)
T ss_pred CccceeeecCCCCCCeECCH
Confidence 56778999999999999987
No 192
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.62 E-value=3.9e+02 Score=27.29 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=40.0
Q ss_pred cEEEEEEeccCCCCCCeEEEEEecCCCceeEeEEEeeCCcEEEEEEeeCCceEEEEEeCCCCeEEE
Q 018497 258 RSYELWVMKEYGLTESWTKLYTIEKPQRIWWPLGFTERGKIFIRGECRHGGYGLLVYNPHSDTFKC 323 (355)
Q Consensus 258 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~yd~~t~~~~~ 323 (355)
.+++||-+.+..+ -.|..+.. .+..+++..+|+-.++|. ..| ....|+.+..++..
T Consensus 432 ~KvRiWsI~d~~V-v~W~Dl~~------lITAvcy~PdGk~avIGt--~~G-~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 432 GKVRLWSISDKKV-VDWNDLRD------LITAVCYSPDGKGAVIGT--FNG-YCRFYDTEGLKLVS 487 (712)
T ss_pred cceEEeecCcCee-Eeehhhhh------hheeEEeccCCceEEEEE--ecc-EEEEEEccCCeEEE
Confidence 5999999987543 34766542 355688888998777743 566 48899999988754
No 193
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.41 E-value=2.2e+02 Score=25.41 Aligned_cols=57 Identities=11% Similarity=0.382 Sum_probs=32.9
Q ss_pred EEcCCCceeEeccCCCcee---eeccccccceeEeCceEEEEEeeeccCCCCCCcEEEEEEcCCceeeEec
Q 018497 158 YSLRSNSWKNIAYGFPRSI---EINRSHINSSVFLNGSVHWCARFSCYHDNSCPWLIVSFDFAKEIFQTVM 225 (355)
Q Consensus 158 yss~t~~W~~~~~~~p~~~---~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~~~Il~fD~~~~~~~~i~ 225 (355)
|+..+.+|......+.... .+.... -+++.|.+-.-. .....+..||+.+.+|+.+.
T Consensus 21 yd~~~~qW~~~g~~i~G~V~~l~~~~~~---~Llv~G~ft~~~--------~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 21 YDTDNSQWSSPGNGISGTVTDLQWASNN---QLLVGGNFTLNG--------TNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EECCCCEeecCCCCceEEEEEEEEecCC---EEEEEEeeEECC--------CCceeEEEEecCCCeeeecC
Confidence 8888888887763321111 111111 344444333322 23568999999999998874
No 194
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=20.11 E-value=37 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.0
Q ss_pred CCCCCCCCCHHHHHHHHhcCC
Q 018497 1 MKCSSFRLPEDVMIDIFLRLE 21 (355)
Q Consensus 1 m~~~~~~LP~dll~eIL~rLP 21 (355)
|+.....||.|+|.+|-.|+.
T Consensus 50 MTa~~~~~p~~~L~~is~~I~ 70 (93)
T PF00958_consen 50 MTADWARLPWELLEEISSRIT 70 (93)
T ss_dssp SSEEE-TB-HHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHH
Confidence 778888999999998877764
Done!