BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018500
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34261|YKAA_CAEEL Uncharacterized amino-acid permease B0303.11 OS=Caenorhabditis
elegans GN=B0303.11/B0303.12 PE=3 SV=5
Length = 903
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 89 GLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMH-NSIYS-----PSTGMQVLD-GGRVKN 141
L L++ + ++Q R S ++P PP ++I++ G+ +L+ G +++N
Sbjct: 180 ALQLSSVMFRYGEYQLRRVSDRNAMIPSPPNEEISTIFAQLFPAAMCGLTILNIGSKLQN 239
Query: 142 FVAGSPFSTGVLVADRISGNFYGQGFLLHNGSYAARSRTSNVPGSG 187
+P G L+A +S FYG +L + AR+ TSN GS
Sbjct: 240 ---TAP--RGALIAIAVSACFYGAAAMLDYVEFFARTSTSNSTGSA 280
>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha
OS=Gallus gallus PE=2 SV=1
Length = 645
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 435 CEAGLLVELVLKLQPQVYSPGDYICRKGDIGREMYIIKEGKLA-VVADDGVTQFVVLSD- 492
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+A++
Sbjct: 493 --GSYFGEISILNIKGSKAGNRRTANIRSIGYSDLFC--LSKDDLMEALTEYPDAKAML 547
>sp|Q28279|CNGA1_CANFA cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2
SV=1
Length = 691
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 482 CEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLA-VVADDGITQFVVLSD- 539
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+ ++
Sbjct: 540 --GSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFC--LSKDDLMEALTEYPDAKTML 594
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha-1 OS=Mus musculus GN=Cnga1 PE=2
SV=2
Length = 684
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 475 CEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLA-VVADDGITQFVVLSD- 532
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+ ++
Sbjct: 533 --GSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFC--LSKDDLMEALTEYPDAKTML 587
>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1
PE=2 SV=1
Length = 683
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 474 CEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLA-VVADDGITQFVVLSD- 531
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+ ++
Sbjct: 532 --GSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFC--LSKDDLMEALTEYPDAKTML 586
>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1
Length = 690
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 481 CEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLA-VVADDGITQFVVLSD- 538
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+ ++
Sbjct: 539 --GSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFC--LSKDDLMEALTEYPDAKGML 593
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1
SV=3
Length = 690
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 108 SKSGPIVPPPPRMHNSIYSPST----------GMQVLDGGRVKNFVAGSPFSTGVLVADR 157
++G +V ++ +YSP M ++ G++ VA + V+++D
Sbjct: 483 CEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYIIKEGKLA-VVADDGVTQFVVLSD- 540
Query: 158 ISGNFYGQGFLLH-NGSYAARSRTSNVPGSGWSDLASDDSSPSSQDEKLDDIPDAEAVV 215
G+++G+ +L+ GS A RT+N+ G+SDL S E L + PDA+ ++
Sbjct: 541 --GSYFGEISILNIKGSKAGNRRTANIKSIGYSDLFC--LSKDDLMEALTEYPDAKTML 595
>sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1 OS=Homo sapiens GN=ING1 PE=1 SV=2
Length = 422
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 38 KGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSK 73
+G SS+R+P P +RR AASL GRA P K
Sbjct: 153 RGCSSDRLPRPAGPARRQFQAASLLTRGWGRAWPWK 188
>sp|P32927|IL3RB_HUMAN Cytokine receptor common subunit beta OS=Homo sapiens GN=CSF2RB
PE=1 SV=2
Length = 897
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 13/138 (9%)
Query: 164 GQGFLLHNGSYAARSRTSNVPG-------SGWSDLASDDSSPS--SQDEKLDDIPDAEAV 214
G L+ + +Y AR RT PG S WS DS P +Q + L+ D AV
Sbjct: 198 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAV 257
Query: 215 VSRVVS-RRDMATQMSPESSTNSSP-RGKSSFSPAVR-SVAELQNDHPAKLEVREVQIDK 271
+S R+++A+ +S SP G+ SP +R + L H ++ V +
Sbjct: 258 LSCSWEVRKEVASSVSFGLFYKPSPDAGEEECSPVLREGLGSLHTRHHCQIPVPD-PATH 316
Query: 272 GSTTISWSKRHRSRRIKS 289
G +S R + IKS
Sbjct: 317 GQYIVSVQPRRAEKHIKS 334
>sp|O28062|Y2221_ARCFU Uncharacterized protein AF_2221 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2221 PE=4 SV=1
Length = 340
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 215 VSRVVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAELQNDHPAKLEVREVQID--KG 272
V +V+ R + E T R SS+ P V + + + ND + E+ +D G
Sbjct: 98 VEKVIYYRKDRRKRQQEKKTIEFLRHLSSYFPYVAAWSAIFNDEAISFDNIEIHLDSFDG 157
Query: 273 STTISWS--KRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKL 321
T +W K + S +IK+ FP D+ C P + S++ S+ ++
Sbjct: 158 EVTYAWEILKNNISAKIKT-FPKGDQ--------CNPFISASDIVLSLVEI 199
>sp|Q0TM79|CARB_CLOP1 Carbamoyl-phosphate synthase large chain OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=carB PE=3
SV=1
Length = 1067
Score = 31.6 bits (70), Expect = 9.8, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 218 VVSRRDMATQMSPESSTNSSPRGKSSFSPAVRSVAEL--------QNDHPAKLEVREVQI 269
V D+ + P ST P + S P +RS E+ + + +
Sbjct: 877 VYKEPDLVSVKVPVFSTQKLPNVEVSLGPEMRSTGEVLGVGRNVFEALYKGFVGASMYTG 936
Query: 270 DKGSTTISWSKRHRSRRIKSGFPDVDKFYQNVTGTCAPSLDLSEVAASISKLQR 323
DKG T ++ K+H + D+DK N T + +L E +++R
Sbjct: 937 DKGKTILATIKKHDKKEFMELAKDLDKLGYNFIATTGTAKELREAGIDAKEVRR 990
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,593,279
Number of Sequences: 539616
Number of extensions: 6175343
Number of successful extensions: 59589
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 55356
Number of HSP's gapped (non-prelim): 3994
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)