Query 018500
Match_columns 355
No_of_seqs 127 out of 150
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 66.2 4.9 0.00017 26.7 2.9 23 330-352 2-26 (31)
2 2qag_B Septin-6, protein NEDD5 20.8 21 0.00071 35.4 0.0 51 299-349 328-385 (427)
3 2qag_C Septin-7; cell cycle, c 20.6 21 0.00072 34.9 0.0 48 302-349 327-381 (418)
4 2zuo_A MVP, major vault protei 20.5 55 0.0019 35.8 3.1 52 301-352 708-759 (861)
5 1lq7_A Alpha3W; three helix bu 18.5 1.1E+02 0.0038 23.1 3.6 26 327-352 30-66 (67)
6 2a26_A Calcyclin-binding prote 15.6 1.6E+02 0.0054 21.3 3.7 33 315-349 17-49 (50)
7 2oa5_A Hypothetical protein BQ 13.6 1.3E+02 0.0044 25.3 3.1 28 323-353 48-75 (110)
8 1r5s_A GAP junction alpha-1 pr 11.1 1.3E+02 0.0044 26.0 2.4 17 111-127 1-24 (132)
9 2p2u_A HOST-nuclease inhibitor 10.0 3.7E+02 0.013 23.2 5.0 35 315-349 33-67 (171)
10 3iax_B Colicin-A; TOLB, TOLB B 8.3 93 0.0032 26.0 0.4 11 38-48 13-23 (115)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=66.15 E-value=4.9 Score=26.66 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=16.1
Q ss_pred HHHHhHH--HHHHHHHHHHHHhhcc
Q 018500 330 AWENLQR--AKAEAAIRKLEVSNFY 352 (355)
Q Consensus 330 AWEn~qK--AKaEA~mrKlE~Kl~~ 352 (355)
.||.++| |..|.+++-||.||+.
T Consensus 2 ewealekkcaalesklqalekklea 26 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777665 5567778888887763
No 2
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.79 E-value=21 Score=35.43 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=0.0
Q ss_pred cccccccCCcchhhhhhhhhhHhhhhHhHHHHHHH-------hHHHHHHHHHHHHHHh
Q 018500 299 QNVTGTCAPSLDLSEVAASISKLQREEAKITAWEN-------LQRAKAEAAIRKLEVS 349 (355)
Q Consensus 299 k~~~esra~AWeeaEkaK~~~r~~rEEakI~AWEn-------~qKAKaEA~mrKlE~K 349 (355)
+...+.+...=|+.-+..+..|.+.+|.++..||. ..|.+.+.++++||+|
T Consensus 328 ~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~ 385 (427)
T 2qag_B 328 RNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDK 385 (427)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555666666667778888999999986 2344555666666654
No 3
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.56 E-value=21 Score=34.92 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred ccccCCcchhhhhhhhhhHhhhhHhHHHHHHHh-------HHHHHHHHHHHHHHh
Q 018500 302 TGTCAPSLDLSEVAASISKLQREEAKITAWENL-------QRAKAEAAIRKLEVS 349 (355)
Q Consensus 302 ~esra~AWeeaEkaK~~~r~~rEEakI~AWEn~-------qKAKaEA~mrKlE~K 349 (355)
.+.+...=|+.=+..+..|.+.||.+++.||.. ++.+.+++.++||+|
T Consensus 327 ~~~~~~~~e~~~~~~f~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~ 381 (418)
T 2qag_C 327 HVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEK 381 (418)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444556677888888888888843 333445555555544
No 4
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=20.55 E-value=55 Score=35.77 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred cccccCCcchhhhhhhhhhHhhhhHhHHHHHHHhHHHHHHHHHHHHHHhhcc
Q 018500 301 VTGTCAPSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEVSNFY 352 (355)
Q Consensus 301 ~~esra~AWeeaEkaK~~~r~~rEEakI~AWEn~qKAKaEA~mrKlE~Kl~~ 352 (355)
++++..+|=|.+-.+|+.++.+-|.+.|.+=-+++.||++|+-.+||...++
T Consensus 708 el~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~~~ael 759 (861)
T 2zuo_A 708 ELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhhhHHHH
Confidence 4567778888888899999999999999999999999998888888765543
No 5
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=18.49 E-value=1.1e+02 Score=23.11 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=18.6
Q ss_pred HHHHHHHhHH-----------HHHHHHHHHHHHhhcc
Q 018500 327 KITAWENLQR-----------AKAEAAIRKLEVSNFY 352 (355)
Q Consensus 327 kI~AWEn~qK-----------AKaEA~mrKlE~Kl~~ 352 (355)
--..||.++| -|.|.+.+|||+..++
T Consensus 30 lkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 30 LKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 3356998876 3677888888877654
No 6
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=15.59 E-value=1.6e+02 Score=21.28 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=24.0
Q ss_pred hhhhhHhhhhHhHHHHHHHhHHHHHHHHHHHHHHh
Q 018500 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEVS 349 (355)
Q Consensus 315 aK~~~r~~rEEakI~AWEn~qKAKaEA~mrKlE~K 349 (355)
......++| ..++.+-+.+++++|.+|.++|.|
T Consensus 17 ~~Ll~~AkR--~rVk~~L~~ei~~lE~ei~~~~~~ 49 (50)
T 2a26_A 17 KVLLEKATR--KRVRDALTAEKSKIETEIKNKMQQ 49 (50)
T ss_dssp HHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444 457788899999999999988875
No 7
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=13.57 E-value=1.3e+02 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=19.5
Q ss_pred hhHhHHHHHHHhHHHHHHHHHHHHHHhhccc
Q 018500 323 REEAKITAWENLQRAKAEAAIRKLEVSNFYS 353 (355)
Q Consensus 323 rEEakI~AWEn~qKAKaEA~mrKlE~Kl~~~ 353 (355)
.+|+.|.+|-+-=-++| ++|||.|+.+.
T Consensus 48 qKea~I~s~~~~Lss~A---~~KIe~kVr~~ 75 (110)
T 2oa5_A 48 KRESIIVSSSRALGAVA---MRKIEAKVRSR 75 (110)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45899999998665554 56667666543
No 8
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=11.08 E-value=1.3e+02 Score=26.03 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=11.6
Q ss_pred CCCCCCC-------CCCCCCCCCC
Q 018500 111 GPIVPPP-------PRMHNSIYSP 127 (355)
Q Consensus 111 GPlgpPg-------~~~y~s~ySp 127 (355)
||||-|+ .+||++--||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (132)
T 1r5s_A 1 GPLGSPSKDCGSPKYAYFNGCSSP 24 (132)
T ss_dssp CCCSCTTTTSSCSSSCCCCCCCCS
T ss_pred CCCCCCccccCCcceeeecccCCC
Confidence 6777665 6888665566
No 9
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=10.01 E-value=3.7e+02 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=20.3
Q ss_pred hhhhhHhhhhHhHHHHHHHhHHHHHHHHHHHHHHh
Q 018500 315 AASISKLQREEAKITAWENLQRAKAEAAIRKLEVS 349 (355)
Q Consensus 315 aK~~~r~~rEEakI~AWEn~qKAKaEA~mrKlE~K 349 (355)
+.+.+-...|-+.|+.|..-+-+.+.+.++.||-.
T Consensus 33 ~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~ 67 (171)
T 2p2u_A 33 GEIEAQMNEAIDAAKARASQKSAPLLARRKELEDG 67 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666666666666643
No 10
>3iax_B Colicin-A; TOLB, TOLB BOX, complex, protein transport, trans antibiotic, antimicrobial, bacteriocin, cell membrane, MEMB transmembrane; 2.60A {Citrobacter freundii}
Probab=8.28 E-value=93 Score=25.98 Aligned_cols=11 Identities=64% Similarity=1.117 Sum_probs=8.4
Q ss_pred CCCCCCcccCC
Q 018500 38 KGWSSERVPHP 48 (355)
Q Consensus 38 KGWsSERVp~~ 48 (355)
.||||||=.-|
T Consensus 13 t~wsserg~gp 23 (115)
T 3iax_B 13 TGWSSERGSGP 23 (115)
T ss_pred CcccccCCCCC
Confidence 68999998433
Done!