Query 018500
Match_columns 355
No_of_seqs 127 out of 150
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018500.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018500hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e29a1 d.58.7.5 (A:8-92) ATP- 28.6 5.9 0.00043 30.0 0.1 12 71-83 71-82 (85)
2 d2oa5a1 d.362.1.1 (A:7-102) Un 12.6 68 0.005 24.4 3.1 28 323-353 42-69 (96)
3 d2f66c1 a.2.17.3 (C:142-206) V 7.7 1E+02 0.0073 22.0 2.2 16 334-349 8-23 (65)
4 d1k78a1 a.4.1.5 (A:19-81) Pax- 7.4 65 0.0048 22.5 1.0 9 63-71 8-16 (63)
5 d1r5sa_ f.50.1.1 (A:) Gap junc 6.6 1.4E+02 0.01 23.3 2.8 12 224-235 99-110 (132)
6 d2hrkb1 a.45.1.2 (B:4-121) GU4 6.2 97 0.007 23.5 1.5 31 322-352 21-52 (118)
7 d1g2ra_ d.192.1.1 (A:) Hypothe 5.9 1.9E+02 0.014 20.9 3.1 41 307-348 51-91 (94)
8 d1tz7a1 c.1.8.1 (A:1-485) Amyl 5.8 1.1E+02 0.0077 28.5 1.9 16 112-127 45-60 (485)
9 d1eswa_ c.1.8.1 (A:) Amylomalt 5.7 1E+02 0.0075 28.6 1.7 48 59-128 8-62 (500)
10 d1ig4a_ d.10.1.3 (A:) Methylat 5.5 82 0.006 22.6 0.7 46 33-81 8-53 (75)
No 1
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.59 E-value=5.9 Score=29.95 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=9.8
Q ss_pred CCCccccccceec
Q 018500 71 PSKWEDAERWICS 83 (355)
Q Consensus 71 PSKWEDAERWI~S 83 (355)
=.+|+|+ ||++|
T Consensus 71 ~~~W~ds-r~~ls 82 (85)
T d2e29a1 71 QAEWHDS-DWILS 82 (85)
T ss_dssp HHHCCSS-SCEEE
T ss_pred HHHhccc-ceEEe
Confidence 3479999 89986
No 2
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=12.63 E-value=68 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred hhHhHHHHHHHhHHHHHHHHHHHHHHhhccc
Q 018500 323 REEAKITAWENLQRAKAEAAIRKLEVSNFYS 353 (355)
Q Consensus 323 rEEakI~AWEn~qKAKaEA~mrKlE~Kl~~~ 353 (355)
.+|+.|.+|-|-=-++| ++|||.|+.+.
T Consensus 42 qke~~I~s~~~~lts~A---~kKIe~kV~~~ 69 (96)
T d2oa5a1 42 KRESIIVSSSRALGAVA---MRKIEAKVRSR 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56899999998766654 56777666543
No 3
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.74 E-value=1e+02 Score=21.96 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHh
Q 018500 334 LQRAKAEAAIRKLEVS 349 (355)
Q Consensus 334 ~qKAKaEA~mrKlE~K 349 (355)
.-|+|.|++|++++++
T Consensus 8 ~Lk~kL~~~~~~ld~~ 23 (65)
T d2f66c1 8 ALKKKLEQNTKKLDEE 23 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3477888888888765
No 4
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.41 E-value=65 Score=22.48 Aligned_cols=9 Identities=56% Similarity=1.043 Sum_probs=4.5
Q ss_pred ccCCCCCCC
Q 018500 63 PFYSGRALP 71 (355)
Q Consensus 63 Pfn~GRtlP 71 (355)
+|.|||+||
T Consensus 8 ~~~~GrPls 16 (63)
T d1k78a1 8 VFVNGRPLP 16 (63)
T ss_dssp BCCTTSCCC
T ss_pred cccCCCcCC
Confidence 455555554
No 5
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.63 E-value=1.4e+02 Score=23.31 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=8.4
Q ss_pred cccccCCCCCCC
Q 018500 224 MATQMSPESSTN 235 (355)
Q Consensus 224 mGTEMTP~~S~e 235 (355)
.|-||-|.+=..
T Consensus 99 ~~hElqPla~~d 110 (132)
T d1r5sa_ 99 AGHELQPLAIVD 110 (132)
T ss_dssp TTTTSCSCSSCS
T ss_pred cccccCchhhhc
Confidence 477888876544
No 6
>d2hrkb1 a.45.1.2 (B:4-121) GU4 nucleic-binding protein 1, Arc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.18 E-value=97 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=23.9
Q ss_pred hhhHhHHHHHHHh-HHHHHHHHHHHHHHhhcc
Q 018500 322 QREEAKITAWENL-QRAKAEAAIRKLEVSNFY 352 (355)
Q Consensus 322 ~rEEakI~AWEn~-qKAKaEA~mrKlE~Kl~~ 352 (355)
+.+.+-+..|+.+ ++.+.++.|..|+..|..
T Consensus 21 ~~~~a~~~qw~~~~~~~~~~~~L~~Ln~~L~~ 52 (118)
T d2hrkb1 21 KEQSAQAAQWESVLKSGQIQPHLDQLNLVLRD 52 (118)
T ss_dssp HHHHHHHHHHHHHHHHTCTGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 4677889999986 556678888888887753
No 7
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=5.89 E-value=1.9e+02 Score=20.93 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=30.6
Q ss_pred CcchhhhhhhhhhHhhhhHhHHHHHHHhHHHHHHHHHHHHHH
Q 018500 307 PSLDLSEVAASISKLQREEAKITAWENLQRAKAEAAIRKLEV 348 (355)
Q Consensus 307 ~AWeeaEkaK~~~r~~rEEakI~AWEn~qKAKaEA~mrKlE~ 348 (355)
..|+.+.+.|..+|.=+....-.-+|++ .+.+|+++++-+.
T Consensus 51 ~c~~~a~kk~~l~ra~k~~v~~~~~~~L-~~~ve~~~~~r~l 91 (94)
T d1g2ra_ 51 AEALEAKKKKVFNRSFSMEVEESFYDEL-IAYVDHKVKRREL 91 (94)
T ss_dssp HHHHHHHHHTHHHHHHTSCCCHHHHHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHhChHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHc
Confidence 4788888888888877776666677887 6777777776544
No 8
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]}
Probab=5.82 E-value=1.1e+02 Score=28.50 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 018500 112 PIVPPPPRMHNSIYSP 127 (355)
Q Consensus 112 PlgpPg~~~y~s~ySp 127 (355)
||.|++..+.+|.|||
T Consensus 45 Pl~~t~~~~~~SPYsp 60 (485)
T d1tz7a1 45 PLNPTSLEAGNSPYSS 60 (485)
T ss_dssp CCSCCCGGGTTCTTSC
T ss_pred CCCCCCCCCCCCCcCc
Confidence 6788874433488888
No 9
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]}
Probab=5.67 E-value=1e+02 Score=28.60 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=27.7
Q ss_pred cccc-ccCCCCCCCCCc------cccccceeccccCCCCCCcccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018500 59 ASLT-PFYSGRALPSKW------EDAERWICSPVSGYGLGLTNKNSLHSQFQRRPKSKSGPIVPPPPRMHNSIYSPS 128 (355)
Q Consensus 59 a~l~-Pfn~GRtlPSKW------EDAERWI~SPvs~~~~~r~s~~~~~~~~~RRPKSKSGPlgpPg~~~y~s~ySp~ 128 (355)
+.|+ +|+ |||+| .||.+||-==... | .++ -| =-||+|++ +.+|.|||+
T Consensus 8 Gvllh~~S----Lp~~~GiGdfG~~a~~fid~l~~~-G---~~~-wQ-----------iLPl~pt~--~~~SPYs~~ 62 (500)
T d1eswa_ 8 GLLLHPTS----LPGPYGVGVLGREARDFLRFLKEA-G---GRY-WQ-----------VLPLGPTG--YGDSPYQSF 62 (500)
T ss_dssp EEECCGGG----SCCSSSSCCSSHHHHHHHHHHHHT-T---CCE-EE-----------CCCCSCBC--TTCCTTSBS
T ss_pred eeEeCccc----cCCCCCCcchhHHHHHHHHHHHHc-C---CCE-EE-----------ECCCCCCC--CCCCCcCcc
Confidence 4455 555 89988 6888887532111 1 121 11 13688887 445888883
No 10
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.54 E-value=82 Score=22.61 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCcccCCCCCCCcccccccccccCCCCCCCCCccccccce
Q 018500 33 SPGAPKGWSSERVPHPTSSSRRHISAASLTPFYSGRALPSKWEDAERWI 81 (355)
Q Consensus 33 SPGtpKGWsSERVp~~s~~~rR~~~~a~l~Pfn~GRtlPSKWEDAERWI 81 (355)
-|-.|+||--|-|.-.++.++-..-+-.+.| +|+.+=||.| ..|.+
T Consensus 8 ~p~LP~GW~re~~~Rk~g~~~gk~DvyY~sP--~Gkk~RS~~e-v~~yL 53 (75)
T d1ig4a_ 8 CPALGPGWKRREVFRKSGATCGRSDTYYQSP--TGDRIRSKVE-LTRYL 53 (75)
T ss_dssp CTTTCTTCEEEEECCCSSSSTTCCEEEEECS--SSCEECSHHH-HHHHH
T ss_pred CCCCCCCcEEEEEEEcCCCCCCceeEEEECC--CCCEEeCHHH-HHHHh
Confidence 3667899999988755443332211223346 6777777764 34454
Done!