Query 018502
Match_columns 355
No_of_seqs 345 out of 2355
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:33:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0788 PurU Formyltetrahydrof 100.0 2.7E-78 5.8E-83 569.2 30.3 281 36-355 1-286 (287)
2 TIGR00655 PurU formyltetrahydr 100.0 5.5E-73 1.2E-77 544.5 35.9 274 43-355 1-280 (280)
3 PRK13010 purU formyltetrahydro 100.0 1.5E-71 3.3E-76 536.6 35.4 278 39-355 6-289 (289)
4 PLN02828 formyltetrahydrofolat 100.0 3.9E-70 8.5E-75 521.3 33.9 267 59-355 1-268 (268)
5 PRK13011 formyltetrahydrofolat 100.0 3.8E-68 8.3E-73 512.4 36.5 280 36-355 1-285 (286)
6 PRK06027 purU formyltetrahydro 100.0 7.7E-67 1.7E-71 503.2 36.1 276 41-355 5-285 (286)
7 COG0299 PurN Folate-dependent 100.0 5.2E-47 1.1E-51 344.9 22.9 192 129-354 1-198 (200)
8 KOG3076 5'-phosphoribosylglyci 100.0 1.1E-44 2.5E-49 326.7 20.7 194 127-353 5-206 (206)
9 PLN02331 phosphoribosylglycina 100.0 7.6E-44 1.7E-48 329.4 25.1 191 130-354 1-202 (207)
10 TIGR00639 PurN phosphoribosylg 100.0 1.4E-43 3E-48 323.6 24.2 183 129-344 1-189 (190)
11 PRK05647 purN phosphoribosylgl 100.0 1.1E-42 2.5E-47 319.8 23.8 188 128-348 1-194 (200)
12 PLN02285 methionyl-tRNA formyl 100.0 8.5E-40 1.8E-44 321.5 22.4 189 125-343 3-202 (334)
13 PF00551 Formyl_trans_N: Formy 100.0 6.1E-39 1.3E-43 289.3 19.6 175 129-336 1-181 (181)
14 COG0223 Fmt Methionyl-tRNA for 100.0 2.1E-37 4.7E-42 300.6 20.1 184 128-350 1-195 (307)
15 PRK06988 putative formyltransf 100.0 4.7E-36 1E-40 292.3 21.7 182 128-348 2-191 (312)
16 PRK00005 fmt methionyl-tRNA fo 100.0 9.1E-36 2E-40 289.5 21.7 183 129-350 1-194 (309)
17 TIGR00460 fmt methionyl-tRNA f 100.0 1.2E-35 2.5E-40 289.5 21.7 182 129-349 1-193 (313)
18 PRK08125 bifunctional UDP-gluc 100.0 4.7E-33 1E-37 293.9 22.2 183 129-350 1-191 (660)
19 PRK07579 hypothetical protein; 100.0 2.6E-32 5.7E-37 258.0 19.9 173 128-348 1-176 (245)
20 KOG3082 Methionyl-tRNA formylt 99.8 5.1E-20 1.1E-24 177.2 8.6 138 171-342 51-190 (338)
21 KOG2452 Formyltetrahydrofolate 99.8 3.3E-19 7.2E-24 179.5 9.5 180 129-343 1-187 (881)
22 cd04893 ACT_GcvR_1 ACT domains 99.8 1.3E-18 2.8E-23 136.9 9.6 70 42-115 1-70 (77)
23 COG3830 ACT domain-containing 99.7 4E-18 8.8E-23 138.2 5.9 74 41-116 2-75 (90)
24 cd04875 ACT_F4HF-DF N-terminal 99.7 4.1E-16 8.9E-21 120.9 9.5 72 44-115 1-72 (74)
25 cd04872 ACT_1ZPV ACT domain pr 99.6 5.6E-16 1.2E-20 124.3 9.1 72 42-115 1-72 (88)
26 PF13740 ACT_6: ACT domain; PD 99.6 1.5E-15 3.2E-20 119.1 7.4 72 41-116 1-72 (76)
27 PRK00194 hypothetical protein; 99.6 2.3E-15 5E-20 120.7 7.9 74 41-116 2-75 (90)
28 cd04870 ACT_PSP_1 CT domains f 99.6 4E-15 8.7E-20 116.0 8.4 69 44-115 1-69 (75)
29 PRK11589 gcvR glycine cleavage 99.6 1.3E-14 2.9E-19 133.1 11.1 73 40-116 6-78 (190)
30 cd04869 ACT_GcvR_2 ACT domains 99.6 2E-14 4.3E-19 112.4 9.4 71 44-115 1-75 (81)
31 PRK11589 gcvR glycine cleavage 99.1 2.4E-10 5.3E-15 105.0 8.7 74 42-116 95-172 (190)
32 cd04871 ACT_PSP_2 ACT domains 99.0 2.1E-10 4.4E-15 92.2 4.3 69 44-116 1-79 (84)
33 COG2716 GcvR Glycine cleavage 98.7 3.1E-08 6.6E-13 89.5 8.1 72 41-116 3-75 (176)
34 PF01842 ACT: ACT domain; Int 98.7 8.5E-08 1.8E-12 71.0 7.5 65 43-110 1-65 (66)
35 cd04925 ACT_ACR_2 ACT domain-c 98.3 1.9E-06 4.2E-11 67.2 7.6 47 44-92 2-48 (74)
36 COG2716 GcvR Glycine cleavage 98.1 5.2E-06 1.1E-10 75.2 6.4 75 41-116 91-169 (176)
37 PF13291 ACT_4: ACT domain; PD 98.1 1.6E-05 3.4E-10 62.2 8.1 69 39-111 3-71 (80)
38 CHL00100 ilvH acetohydroxyacid 98.0 8.6E-05 1.9E-09 67.7 11.8 74 41-116 1-74 (174)
39 cd04873 ACT_UUR-ACR-like ACT d 98.0 5.8E-05 1.3E-09 56.3 8.4 49 44-94 2-50 (70)
40 PRK08577 hypothetical protein; 97.9 7.7E-05 1.7E-09 64.7 9.2 72 38-109 52-123 (136)
41 PRK04435 hypothetical protein; 97.8 9.9E-05 2.1E-09 65.3 8.6 57 37-94 64-120 (147)
42 cd04886 ACT_ThrD-II-like C-ter 97.8 7.7E-05 1.7E-09 55.3 6.8 61 45-109 1-64 (73)
43 cd04899 ACT_ACR-UUR-like_2 C-t 97.8 0.0002 4.4E-09 53.9 9.1 48 44-93 2-49 (70)
44 cd04888 ACT_PheB-BS C-terminal 97.8 8.6E-05 1.9E-09 56.7 7.1 50 44-94 2-51 (76)
45 cd04874 ACT_Af1403 N-terminal 97.7 0.00018 3.9E-09 53.4 7.8 61 44-108 2-62 (72)
46 PRK03381 PII uridylyl-transfer 97.7 0.00084 1.8E-08 73.6 14.8 70 40-111 597-667 (774)
47 cd04909 ACT_PDH-BS C-terminal 97.7 0.00016 3.4E-09 54.6 6.5 63 43-108 2-64 (69)
48 cd04902 ACT_3PGDH-xct C-termin 97.7 0.00015 3.2E-09 54.7 6.4 60 45-108 2-61 (73)
49 cd04928 ACT_TyrKc Uncharacteri 97.6 0.00045 9.7E-09 53.9 9.0 64 43-108 2-65 (68)
50 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.0004 8.7E-09 52.9 8.4 65 45-114 2-66 (74)
51 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.6 0.00055 1.2E-08 51.4 8.4 65 43-111 1-65 (79)
52 cd04927 ACT_ACR-like_2 Second 97.5 0.0011 2.3E-08 52.2 9.5 35 43-77 1-35 (76)
53 cd04878 ACT_AHAS N-terminal AC 97.5 0.00049 1.1E-08 50.8 7.2 62 44-107 2-63 (72)
54 cd04876 ACT_RelA-SpoT ACT dom 97.5 0.00042 9E-09 49.4 6.3 49 45-94 1-49 (71)
55 cd04900 ACT_UUR-like_1 ACT dom 97.4 0.001 2.2E-08 51.3 8.5 34 44-77 3-36 (73)
56 cd04879 ACT_3PGDH-like ACT_3PG 97.4 0.0009 2E-08 49.1 7.7 61 45-109 2-62 (71)
57 PRK06737 acetolactate synthase 97.3 0.00087 1.9E-08 53.4 6.9 67 41-109 1-67 (76)
58 cd04903 ACT_LSD C-terminal ACT 97.2 0.0017 3.6E-08 47.9 7.4 61 45-109 2-62 (71)
59 cd04883 ACT_AcuB C-terminal AC 97.2 0.0028 6.1E-08 47.8 8.4 61 44-108 3-63 (72)
60 cd04926 ACT_ACR_4 C-terminal 97.2 0.0035 7.5E-08 48.5 9.0 34 44-77 3-36 (72)
61 PRK11895 ilvH acetolactate syn 97.1 0.0018 4E-08 58.4 7.7 67 41-109 1-67 (161)
62 cd04897 ACT_ACR_3 ACT domain-c 97.1 0.00099 2.1E-08 52.9 5.3 44 43-86 2-47 (75)
63 cd04889 ACT_PDH-BS-like C-term 97.1 0.0016 3.4E-08 47.3 5.7 46 45-91 1-46 (56)
64 cd04901 ACT_3PGDH C-terminal A 97.0 0.001 2.2E-08 49.8 4.6 58 45-108 2-59 (69)
65 cd04877 ACT_TyrR N-terminal AC 97.0 0.0036 7.8E-08 48.4 7.8 62 45-115 3-64 (74)
66 cd02116 ACT ACT domains are co 97.0 0.0036 7.8E-08 42.1 6.9 34 45-78 1-34 (60)
67 PRK11152 ilvM acetolactate syn 97.0 0.0033 7.1E-08 50.1 7.5 66 41-109 2-67 (76)
68 TIGR01693 UTase_glnD [Protein- 97.0 0.0014 3E-08 72.5 7.3 60 32-91 769-830 (850)
69 cd04884 ACT_CBS C-terminal ACT 97.0 0.0038 8.2E-08 47.7 7.6 33 45-77 2-34 (72)
70 cd04895 ACT_ACR_1 ACT domain-c 97.0 0.0031 6.8E-08 49.7 7.0 35 43-77 2-36 (72)
71 cd04882 ACT_Bt0572_2 C-termina 96.9 0.0034 7.4E-08 46.1 6.4 59 44-108 1-59 (65)
72 PRK13562 acetolactate synthase 96.9 0.0036 7.7E-08 50.9 6.8 68 41-109 1-68 (84)
73 TIGR00119 acolac_sm acetolacta 96.8 0.0042 9.2E-08 55.8 7.6 66 42-109 1-66 (157)
74 TIGR00719 sda_beta L-serine de 96.8 0.004 8.7E-08 58.0 7.3 67 23-93 133-199 (208)
75 cd04905 ACT_CM-PDT C-terminal 96.7 0.014 3.1E-07 45.6 8.9 64 45-111 4-68 (80)
76 PRK08178 acetolactate synthase 96.7 0.0083 1.8E-07 49.9 7.6 66 41-109 7-72 (96)
77 cd04908 ACT_Bt0572_1 N-termina 96.7 0.012 2.6E-07 44.3 7.9 57 44-108 3-59 (66)
78 cd04894 ACT_ACR-like_1 ACT dom 96.5 0.013 2.8E-07 45.3 7.1 63 44-109 2-67 (69)
79 cd04880 ACT_AAAH-PDT-like ACT 96.5 0.015 3.2E-07 44.8 7.6 63 46-111 3-66 (75)
80 cd04896 ACT_ACR-like_3 ACT dom 96.4 0.028 6.2E-07 44.6 8.8 33 44-76 2-34 (75)
81 PF13840 ACT_7: ACT domain ; P 96.2 0.02 4.4E-07 43.6 6.8 33 42-74 6-42 (65)
82 COG4492 PheB ACT domain-contai 96.1 0.021 4.5E-07 50.3 7.2 80 22-107 57-136 (150)
83 PRK05092 PII uridylyl-transfer 95.8 0.16 3.5E-06 57.0 14.6 75 34-110 724-804 (931)
84 PF13710 ACT_5: ACT domain; PD 95.8 0.032 7E-07 42.5 6.3 57 51-109 1-57 (63)
85 PRK03381 PII uridylyl-transfer 95.6 0.057 1.2E-06 59.5 9.8 56 23-78 687-743 (774)
86 PRK07334 threonine dehydratase 95.6 0.075 1.6E-06 53.9 9.8 69 37-109 321-392 (403)
87 PRK10872 relA (p)ppGpp synthet 95.5 0.061 1.3E-06 59.1 9.5 72 40-115 664-735 (743)
88 cd04885 ACT_ThrD-I Tandem C-te 95.4 0.067 1.4E-06 40.7 6.6 30 46-76 2-31 (68)
89 PRK13581 D-3-phosphoglycerate 95.2 0.034 7.4E-07 58.6 6.1 77 25-109 439-515 (526)
90 PRK11790 D-3-phosphoglycerate 95.2 0.045 9.7E-07 56.0 6.7 70 34-109 330-399 (409)
91 COG1707 ACT domain-containing 95.1 0.062 1.3E-06 49.2 6.6 62 44-109 4-66 (218)
92 TIGR01327 PGDH D-3-phosphoglyc 95.0 0.019 4.1E-07 60.4 3.5 79 22-108 435-513 (525)
93 cd04913 ACT_AKii-LysC-BS-like_ 95.0 0.13 2.8E-06 38.1 7.1 65 45-114 4-69 (75)
94 PRK05092 PII uridylyl-transfer 94.9 0.1 2.2E-06 58.6 9.1 47 32-78 833-879 (931)
95 TIGR00691 spoT_relA (p)ppGpp s 94.7 0.14 3E-06 55.9 9.3 71 40-115 608-678 (683)
96 PRK11092 bifunctional (p)ppGpp 94.5 0.16 3.5E-06 55.5 9.2 71 40-115 624-694 (702)
97 PRK05007 PII uridylyl-transfer 94.5 0.071 1.5E-06 59.6 6.5 55 32-86 798-854 (884)
98 PRK03059 PII uridylyl-transfer 94.4 0.27 5.9E-06 54.9 10.7 56 23-78 766-822 (856)
99 PF00185 OTCace: Aspartate/orn 94.1 0.11 2.4E-06 46.2 5.8 118 128-272 2-125 (158)
100 TIGR01127 ilvA_1Cterm threonin 94.1 0.19 4.1E-06 50.4 8.1 73 35-108 298-373 (380)
101 PRK01759 glnD PII uridylyl-tra 94.1 0.099 2.2E-06 58.3 6.6 46 32-77 773-818 (854)
102 PRK04374 PII uridylyl-transfer 94.0 0.33 7.2E-06 54.3 10.3 58 21-78 774-832 (869)
103 COG4747 ACT domain-containing 94.0 1.6 3.4E-05 38.1 12.1 122 43-185 4-134 (142)
104 cd04931 ACT_PAH ACT domain of 93.9 0.67 1.5E-05 37.9 9.5 70 42-115 14-84 (90)
105 PRK08198 threonine dehydratase 93.7 0.13 2.7E-06 52.1 5.9 42 35-76 320-361 (404)
106 cd04892 ACT_AK-like_2 ACT doma 93.6 0.62 1.3E-05 33.1 8.0 34 44-77 2-38 (65)
107 PRK01759 glnD PII uridylyl-tra 93.2 0.43 9.3E-06 53.3 9.6 56 34-90 669-724 (854)
108 PRK05007 PII uridylyl-transfer 92.8 0.53 1.1E-05 52.8 9.6 49 35-84 694-742 (884)
109 PRK09436 thrA bifunctional asp 92.7 1.3 2.8E-05 49.4 12.4 102 41-162 395-504 (819)
110 cd04922 ACT_AKi-HSDH-ThrA_2 AC 92.7 1.2 2.6E-05 32.5 8.5 34 43-76 2-38 (66)
111 cd04904 ACT_AAAH ACT domain of 92.6 1 2.3E-05 34.9 8.4 62 46-111 4-65 (74)
112 PRK00275 glnD PII uridylyl-tra 92.3 0.52 1.1E-05 53.0 8.7 45 34-78 806-850 (895)
113 COG0440 IlvH Acetolactate synt 92.2 1.2 2.6E-05 40.5 9.3 74 40-115 2-75 (163)
114 cd04937 ACT_AKi-DapG-BS_2 ACT 92.1 1.2 2.5E-05 33.3 7.9 59 43-114 2-63 (64)
115 PRK04374 PII uridylyl-transfer 92.0 0.58 1.2E-05 52.5 8.7 55 28-83 674-730 (869)
116 PRK00275 glnD PII uridylyl-tra 92.0 0.59 1.3E-05 52.5 8.7 49 41-90 703-751 (895)
117 TIGR01693 UTase_glnD [Protein- 91.9 0.87 1.9E-05 50.7 9.9 43 40-83 666-708 (850)
118 COG0317 SpoT Guanosine polypho 91.9 0.78 1.7E-05 50.2 9.2 72 39-115 624-695 (701)
119 PLN02342 ornithine carbamoyltr 91.9 1.1 2.3E-05 45.4 9.6 61 198-273 253-313 (348)
120 PRK08818 prephenate dehydrogen 91.9 0.72 1.6E-05 46.9 8.5 58 45-106 298-356 (370)
121 COG2150 Predicted regulator of 91.8 0.37 8.1E-06 43.7 5.5 57 36-92 87-145 (167)
122 PRK06382 threonine dehydratase 91.4 0.72 1.6E-05 47.0 7.9 72 36-108 324-398 (406)
123 cd04924 ACT_AK-Arch_2 ACT doma 91.1 1.9 4E-05 31.4 7.9 60 43-113 2-64 (66)
124 cd04919 ACT_AK-Hom3_2 ACT doma 91.0 1.9 4.2E-05 31.6 8.0 59 43-112 2-63 (66)
125 cd04932 ACT_AKiii-LysC-EC_1 AC 90.6 1.4 3E-05 34.6 7.2 33 44-76 3-38 (75)
126 cd04929 ACT_TPH ACT domain of 90.4 2.7 5.9E-05 32.9 8.7 61 48-112 6-66 (74)
127 KOG2663 Acetolactate synthase, 90.3 0.43 9.4E-06 46.3 4.8 68 40-109 75-142 (309)
128 PRK03059 PII uridylyl-transfer 90.0 1.9 4.2E-05 48.3 10.3 45 38-83 674-718 (856)
129 cd04906 ACT_ThrD-I_1 First of 90.0 1.2 2.6E-05 35.3 6.5 32 43-76 2-33 (85)
130 cd04912 ACT_AKiii-LysC-EC-like 89.9 1.3 2.8E-05 34.3 6.4 34 43-76 2-38 (75)
131 PRK06545 prephenate dehydrogen 89.8 0.82 1.8E-05 45.7 6.6 35 41-75 289-323 (359)
132 COG2844 GlnD UTP:GlnB (protein 89.7 0.79 1.7E-05 50.8 6.7 54 24-77 772-826 (867)
133 cd04918 ACT_AK1-AT_2 ACT domai 89.4 3.4 7.4E-05 31.0 8.3 61 42-113 1-63 (65)
134 PRK02255 putrescine carbamoylt 89.3 2.3 5E-05 42.7 9.4 61 198-272 216-277 (338)
135 cd04868 ACT_AK-like ACT domain 89.1 3.1 6.6E-05 28.7 7.4 34 44-77 2-38 (60)
136 PRK10696 tRNA 2-thiocytidine b 88.9 3.3 7.1E-05 39.5 9.7 79 101-188 11-94 (258)
137 PRK06349 homoserine dehydrogen 88.5 2.4 5.1E-05 43.7 9.0 68 39-111 345-412 (426)
138 cd04930 ACT_TH ACT domain of t 88.4 3.4 7.3E-05 35.3 8.5 64 43-111 42-106 (115)
139 PRK11899 prephenate dehydratas 87.6 3.9 8.6E-05 40.0 9.5 68 42-111 194-261 (279)
140 cd04916 ACT_AKiii-YclM-BS_2 AC 87.5 5.3 0.00011 29.0 8.1 35 43-77 2-39 (66)
141 PRK10820 DNA-binding transcrip 87.5 1 2.2E-05 47.4 5.8 90 44-152 2-92 (520)
142 PRK08526 threonine dehydratase 87.4 2 4.3E-05 44.0 7.6 43 35-77 319-361 (403)
143 PRK00779 ornithine carbamoyltr 87.2 3.9 8.4E-05 40.4 9.3 61 198-273 211-271 (304)
144 PRK09466 metL bifunctional asp 87.2 7.9 0.00017 43.3 12.6 101 41-163 390-499 (810)
145 cd04936 ACT_AKii-LysC-BS-like_ 87.1 6 0.00013 28.2 8.1 33 44-76 2-37 (63)
146 COG2102 Predicted ATPases of P 86.9 4.6 0.0001 38.5 9.2 79 129-210 1-92 (223)
147 cd04933 ACT_AK1-AT_1 ACT domai 86.4 3 6.5E-05 33.2 6.6 28 49-76 11-38 (78)
148 PRK04284 ornithine carbamoyltr 85.9 6 0.00013 39.6 10.0 62 199-274 219-281 (332)
149 cd04915 ACT_AK-Ectoine_2 ACT d 85.9 7.4 0.00016 29.4 8.3 60 43-113 3-64 (66)
150 cd04891 ACT_AK-LysC-DapG-like_ 85.9 4.5 9.8E-05 28.3 6.8 28 50-77 9-36 (61)
151 cd04923 ACT_AK-LysC-DapG-like_ 84.9 9.1 0.0002 27.2 8.1 33 44-76 2-37 (63)
152 cd04935 ACT_AKiii-DAPDC_1 ACT 84.8 3 6.4E-05 32.6 5.8 28 49-76 11-38 (75)
153 PRK08192 aspartate carbamoyltr 84.6 10 0.00022 38.1 10.9 28 243-272 251-279 (338)
154 PRK13814 pyrB aspartate carbam 84.4 4.6 9.9E-05 40.1 8.3 118 139-273 136-270 (310)
155 COG3978 Acetolactate synthase 84.4 7 0.00015 31.8 7.7 66 41-109 2-67 (86)
156 TIGR01761 thiaz-red thiazoliny 84.1 1.9 4E-05 43.4 5.4 51 127-184 2-52 (343)
157 COG2061 ACT-domain-containing 83.9 20 0.00042 32.7 11.1 103 41-150 4-109 (170)
158 cd04921 ACT_AKi-HSDH-ThrA-like 83.6 11 0.00025 28.6 8.6 34 43-76 2-38 (80)
159 PRK06291 aspartate kinase; Pro 82.6 24 0.00051 36.8 13.0 85 42-138 321-408 (465)
160 TIGR00670 asp_carb_tr aspartat 82.5 9.5 0.00021 37.7 9.6 73 172-266 192-264 (301)
161 COG0482 TrmU Predicted tRNA(5- 82.4 8.3 0.00018 39.2 9.2 119 127-254 2-161 (356)
162 COG2844 GlnD UTP:GlnB (protein 82.2 6.7 0.00014 43.8 9.1 84 29-113 670-755 (867)
163 PRK03515 ornithine carbamoyltr 81.9 9.5 0.00021 38.3 9.5 62 198-273 219-281 (336)
164 TIGR02079 THD1 threonine dehyd 81.8 3.3 7.1E-05 42.4 6.3 44 33-76 316-359 (409)
165 PRK06635 aspartate kinase; Rev 81.6 6.7 0.00015 39.6 8.4 61 41-114 339-402 (404)
166 PRK08639 threonine dehydratase 81.1 3.7 7.9E-05 42.1 6.4 44 33-76 327-370 (420)
167 cd01994 Alpha_ANH_like_IV This 80.8 12 0.00026 34.4 9.1 55 130-188 1-65 (194)
168 PRK10622 pheA bifunctional cho 80.3 9.5 0.00021 39.0 9.0 66 43-112 300-365 (386)
169 PF01902 ATP_bind_4: ATP-bindi 79.4 6.7 0.00015 37.1 7.0 78 129-210 1-91 (218)
170 TIGR00658 orni_carb_tr ornithi 79.3 15 0.00032 36.3 9.7 29 242-272 241-269 (304)
171 PRK04523 N-acetylornithine car 78.6 28 0.00061 34.9 11.6 61 198-272 238-299 (335)
172 PRK01713 ornithine carbamoyltr 78.6 15 0.00033 36.7 9.7 62 198-273 219-281 (334)
173 TIGR00290 MJ0570_dom MJ0570-re 78.4 15 0.00032 34.9 9.0 78 129-210 1-91 (223)
174 COG0078 ArgF Ornithine carbamo 78.3 30 0.00065 34.6 11.4 119 127-272 152-275 (310)
175 COG3603 Uncharacterized conser 78.1 7.5 0.00016 33.9 6.3 35 43-77 64-101 (128)
176 TIGR00289 conserved hypothetic 77.9 18 0.00038 34.4 9.4 78 129-210 1-91 (222)
177 cd04920 ACT_AKiii-DAPDC_2 ACT 77.1 16 0.00036 27.2 7.3 32 43-74 1-35 (63)
178 PRK13376 pyrB bifunctional asp 77.0 13 0.00028 39.7 9.0 29 243-273 271-299 (525)
179 PLN02551 aspartokinase 76.6 41 0.00088 35.9 12.6 86 42-137 366-454 (521)
180 cd04890 ACT_AK-like_1 ACT doma 76.3 8.7 0.00019 27.9 5.5 27 50-76 11-37 (62)
181 COG0077 PheA Prephenate dehydr 76.2 12 0.00027 36.8 8.1 68 39-111 193-261 (279)
182 PRK08841 aspartate kinase; Val 75.9 12 0.00027 38.2 8.3 63 40-115 316-378 (392)
183 PRK02102 ornithine carbamoyltr 75.4 22 0.00047 35.8 9.7 56 199-269 219-275 (331)
184 PRK09181 aspartate kinase; Val 75.2 50 0.0011 34.8 12.7 83 41-139 328-413 (475)
185 PRK14665 mnmA tRNA-specific 2- 74.9 15 0.00033 37.2 8.6 119 127-255 4-159 (360)
186 PLN02527 aspartate carbamoyltr 74.4 27 0.00059 34.5 10.1 76 172-272 194-269 (306)
187 PRK06635 aspartate kinase; Rev 74.2 45 0.00098 33.6 11.8 36 43-78 263-299 (404)
188 PRK07431 aspartate kinase; Pro 73.4 28 0.00062 37.1 10.6 99 44-150 441-544 (587)
189 TIGR00656 asp_kin_monofn aspar 72.9 16 0.00034 36.9 8.2 61 41-114 336-399 (401)
190 TIGR03316 ygeW probable carbam 72.2 69 0.0015 32.5 12.5 87 176-273 225-320 (357)
191 PRK11891 aspartate carbamoyltr 72.1 32 0.00069 35.9 10.2 74 172-270 284-358 (429)
192 PRK15385 magnesium transport p 72.0 37 0.00081 32.5 9.9 81 41-123 141-223 (225)
193 TIGR00656 asp_kin_monofn aspar 71.7 68 0.0015 32.3 12.5 35 42-76 260-297 (401)
194 PRK08210 aspartate kinase I; R 71.5 19 0.00041 36.5 8.4 62 41-115 338-402 (403)
195 PF01171 ATP_bind_3: PP-loop f 69.2 15 0.00033 32.8 6.4 58 130-188 1-65 (182)
196 cd04934 ACT_AK-Hom3_1 CT domai 69.1 23 0.00049 27.5 6.6 25 52-76 14-38 (73)
197 PRK12562 ornithine carbamoyltr 68.9 40 0.00087 33.9 9.9 61 198-272 219-280 (334)
198 PRK10660 tilS tRNA(Ile)-lysidi 68.5 18 0.00038 37.5 7.5 61 128-188 15-82 (436)
199 COG3283 TyrR Transcriptional r 67.5 13 0.00028 38.6 6.0 89 45-152 3-92 (511)
200 PRK14805 ornithine carbamoyltr 67.5 34 0.00073 33.9 9.0 57 201-273 211-267 (302)
201 PRK11898 prephenate dehydratas 67.1 34 0.00075 33.4 8.9 67 42-111 196-264 (283)
202 PRK09034 aspartate kinase; Rev 67.0 51 0.0011 34.2 10.6 32 43-74 309-343 (454)
203 PF01408 GFO_IDH_MocA: Oxidore 66.8 10 0.00022 30.8 4.5 70 129-214 1-72 (120)
204 PRK08300 acetaldehyde dehydrog 66.7 25 0.00054 35.0 7.9 73 127-212 3-78 (302)
205 PLN02317 arogenate dehydratase 66.7 37 0.0008 35.0 9.2 66 43-111 286-364 (382)
206 cd04914 ACT_AKi-DapG-BS_1 ACT 65.6 43 0.00093 25.3 7.4 34 43-76 2-36 (67)
207 cd01992 PP-ATPase N-terminal d 65.0 41 0.00088 29.6 8.3 85 130-215 1-107 (185)
208 PRK12483 threonine dehydratase 63.9 18 0.00038 38.6 6.6 43 33-77 336-378 (521)
209 PRK14449 acylphosphatase; Prov 63.6 30 0.00065 28.0 6.5 59 102-164 18-76 (90)
210 PRK09436 thrA bifunctional asp 63.5 1E+02 0.0023 34.6 12.8 37 41-77 314-353 (819)
211 PRK06552 keto-hydroxyglutarate 63.5 1.3E+02 0.0029 28.2 12.1 119 45-210 16-135 (213)
212 PF03054 tRNA_Me_trans: tRNA m 62.3 17 0.00037 36.9 5.9 119 129-254 1-163 (356)
213 PRK09181 aspartate kinase; Val 62.3 36 0.00079 35.8 8.5 64 40-114 400-465 (475)
214 PRK09034 aspartate kinase; Rev 62.2 40 0.00086 35.1 8.7 63 41-114 384-449 (454)
215 TIGR03215 ac_ald_DH_ac acetald 62.2 52 0.0011 32.4 9.1 51 128-186 1-53 (285)
216 COG1570 XseA Exonuclease VII, 61.5 1.9E+02 0.0041 30.5 13.3 184 22-215 23-234 (440)
217 PRK06291 aspartate kinase; Pro 61.2 42 0.00091 34.9 8.7 64 41-115 397-463 (465)
218 PLN02696 1-deoxy-D-xylulose-5- 61.2 35 0.00075 35.9 8.0 79 127-211 56-156 (454)
219 PRK07431 aspartate kinase; Pro 60.6 30 0.00064 37.0 7.7 62 41-115 518-582 (587)
220 TIGR00657 asp_kinases aspartat 60.3 34 0.00075 35.1 7.8 35 41-75 377-414 (441)
221 PRK02047 hypothetical protein; 60.0 54 0.0012 26.8 7.4 66 42-112 16-84 (91)
222 PRK05447 1-deoxy-D-xylulose 5- 59.8 69 0.0015 33.0 9.8 55 128-188 1-57 (385)
223 TIGR02432 lysidine_TilS_N tRNA 59.6 20 0.00043 31.9 5.3 58 130-188 1-65 (189)
224 COG0527 LysC Aspartokinases [A 59.3 2.2E+02 0.0048 29.9 13.6 121 27-162 282-418 (447)
225 PF00708 Acylphosphatase: Acyl 59.3 31 0.00068 27.5 5.9 59 101-163 18-76 (91)
226 TIGR03590 PseG pseudaminic aci 59.1 55 0.0012 31.4 8.6 72 137-214 13-90 (279)
227 PLN02550 threonine dehydratase 58.3 20 0.00042 38.9 5.8 43 33-77 408-450 (591)
228 cd04917 ACT_AKiii-LysC-EC_2 AC 58.3 70 0.0015 23.3 8.3 32 43-76 2-36 (64)
229 PLN02551 aspartokinase 57.9 48 0.001 35.4 8.6 63 40-113 443-507 (521)
230 PRK00856 pyrB aspartate carbam 57.4 41 0.00089 33.3 7.5 119 139-272 135-267 (305)
231 TIGR03759 conj_TIGR03759 integ 57.3 78 0.0017 29.9 8.8 58 127-188 108-166 (200)
232 TIGR00657 asp_kinases aspartat 57.1 1.9E+02 0.004 29.7 12.6 37 41-77 301-339 (441)
233 PRK00341 hypothetical protein; 56.9 69 0.0015 26.2 7.6 65 43-112 18-84 (91)
234 PRK09224 threonine dehydratase 56.6 29 0.00064 36.6 6.7 71 34-108 320-391 (504)
235 COG0673 MviM Predicted dehydro 56.5 43 0.00093 32.2 7.4 72 127-212 2-75 (342)
236 PRK14447 acylphosphatase; Prov 56.2 38 0.00083 27.7 6.0 60 102-164 19-78 (95)
237 TIGR01124 ilvA_2Cterm threonin 56.0 20 0.00044 37.8 5.4 43 32-76 315-357 (499)
238 PRK00227 glnD PII uridylyl-tra 55.9 63 0.0014 35.8 9.3 63 43-108 547-611 (693)
239 PRK14664 tRNA-specific 2-thiou 55.9 34 0.00074 34.8 6.8 57 127-188 4-62 (362)
240 PRK14423 acylphosphatase; Prov 55.0 40 0.00086 27.4 5.9 58 102-163 20-77 (92)
241 PRK14433 acylphosphatase; Prov 54.8 33 0.00072 27.7 5.3 59 102-164 16-74 (87)
242 PF03807 F420_oxidored: NADP o 54.3 51 0.0011 25.7 6.3 71 130-215 1-72 (96)
243 COG4569 MhpF Acetaldehyde dehy 53.2 55 0.0012 31.5 7.2 54 127-186 3-57 (310)
244 PRK14436 acylphosphatase; Prov 53.1 51 0.0011 26.8 6.2 60 101-164 18-77 (91)
245 PRK00143 mnmA tRNA-specific 2- 53.0 93 0.002 31.2 9.4 55 129-188 1-70 (346)
246 PRK14422 acylphosphatase; Prov 52.8 54 0.0012 26.8 6.4 58 102-163 21-78 (93)
247 TIGR01270 Trp_5_monoox tryptop 52.4 80 0.0017 33.4 8.9 67 42-112 31-98 (464)
248 COG4747 ACT domain-containing 51.7 53 0.0011 28.9 6.3 62 42-110 69-130 (142)
249 COG0037 MesJ tRNA(Ile)-lysidin 51.6 1E+02 0.0022 29.3 9.1 75 100-188 4-85 (298)
250 COG0394 Wzb Protein-tyrosine-p 51.6 40 0.00086 29.5 5.7 82 128-215 2-87 (139)
251 PRK00907 hypothetical protein; 50.9 82 0.0018 26.0 7.1 66 42-111 17-84 (92)
252 PRK14431 acylphosphatase; Prov 50.3 51 0.0011 26.7 5.8 58 102-164 17-75 (89)
253 PF00448 SRP54: SRP54-type pro 50.3 88 0.0019 28.7 8.1 84 130-215 2-94 (196)
254 PRK14426 acylphosphatase; Prov 50.3 59 0.0013 26.4 6.2 60 101-164 18-78 (92)
255 cd05017 SIS_PGI_PMI_1 The memb 49.6 87 0.0019 25.9 7.3 55 128-190 43-99 (119)
256 PRK14440 acylphosphatase; Prov 49.5 60 0.0013 26.3 6.1 59 102-164 18-76 (90)
257 PRK14430 acylphosphatase; Prov 49.2 59 0.0013 26.5 6.0 59 102-164 19-77 (92)
258 PRK14429 acylphosphatase; Prov 49.0 65 0.0014 26.0 6.2 59 102-164 17-75 (90)
259 PLN02819 lysine-ketoglutarate 48.3 4.8E+02 0.01 30.6 14.9 81 126-212 567-656 (1042)
260 TIGR01268 Phe4hydrox_tetr phen 48.3 1.1E+02 0.0025 32.0 9.3 66 44-113 18-84 (436)
261 PRK14427 acylphosphatase; Prov 48.1 58 0.0013 26.6 5.8 59 102-164 21-79 (94)
262 COG1254 AcyP Acylphosphatases 47.7 84 0.0018 25.9 6.7 59 101-163 18-76 (92)
263 PRK14441 acylphosphatase; Prov 47.3 60 0.0013 26.5 5.8 58 102-163 20-77 (93)
264 PRK08306 dipicolinate synthase 47.0 61 0.0013 31.7 6.8 66 128-211 152-217 (296)
265 cd01988 Na_H_Antiporter_C The 46.7 1.5E+02 0.0032 23.7 9.0 43 173-215 61-105 (132)
266 PRK04998 hypothetical protein; 46.7 1.3E+02 0.0027 24.3 7.5 66 42-114 15-83 (88)
267 TIGR03693 ocin_ThiF_like putat 46.1 77 0.0017 34.8 7.8 78 127-213 128-213 (637)
268 PRK09084 aspartate kinase III; 45.9 1.1E+02 0.0024 31.8 8.9 35 42-76 306-343 (448)
269 PRK07200 aspartate/ornithine c 45.8 1.9E+02 0.0041 29.9 10.4 71 198-271 256-334 (395)
270 PF10686 DUF2493: Protein of u 45.7 43 0.00093 26.1 4.5 59 128-189 3-65 (71)
271 PRK14437 acylphosphatase; Prov 45.3 67 0.0014 27.2 5.9 59 101-163 37-95 (109)
272 PRK13600 putative ribosomal pr 45.0 34 0.00075 27.8 4.0 45 143-189 19-63 (84)
273 cd01998 tRNA_Me_trans tRNA met 44.8 57 0.0012 32.7 6.4 54 130-188 1-67 (349)
274 PRK14445 acylphosphatase; Prov 44.6 66 0.0014 26.0 5.6 59 102-164 19-77 (91)
275 PRK14451 acylphosphatase; Prov 44.0 77 0.0017 25.7 5.9 59 102-164 18-76 (89)
276 PRK14450 acylphosphatase; Prov 43.9 77 0.0017 25.6 5.9 60 102-164 17-76 (91)
277 PRK14438 acylphosphatase; Prov 43.5 70 0.0015 25.9 5.6 59 102-164 18-76 (91)
278 PF01784 NIF3: NIF3 (NGG1p int 43.3 60 0.0013 30.7 6.0 83 89-189 135-220 (241)
279 PRK00726 murG undecaprenyldiph 43.2 1.5E+02 0.0033 28.6 8.9 79 129-214 2-101 (357)
280 PRK08210 aspartate kinase I; R 43.1 48 0.001 33.6 5.6 35 42-76 271-306 (403)
281 cd01993 Alpha_ANH_like_II This 42.9 67 0.0015 28.0 5.9 58 130-188 1-67 (185)
282 PRK14561 hypothetical protein; 42.9 44 0.00096 30.6 4.9 54 129-188 1-57 (194)
283 PRK14425 acylphosphatase; Prov 42.6 90 0.0019 25.5 6.2 59 102-164 21-79 (94)
284 PRK11133 serB phosphoserine ph 41.9 1.5E+02 0.0033 29.5 8.8 93 26-134 15-115 (322)
285 PRK14444 acylphosphatase; Prov 41.6 95 0.0021 25.2 6.1 58 102-163 19-76 (92)
286 COG1921 SelA Selenocysteine sy 41.6 1.2E+02 0.0026 31.5 8.1 81 130-213 134-222 (395)
287 PRK13820 argininosuccinate syn 41.6 75 0.0016 32.8 6.7 58 128-189 2-64 (394)
288 PRK14452 acylphosphatase; Prov 41.5 97 0.0021 26.2 6.3 61 100-164 33-93 (107)
289 TIGR01278 DPOR_BchB light-inde 41.3 2.3E+02 0.005 29.9 10.5 22 52-73 173-194 (511)
290 PRK13304 L-aspartate dehydroge 41.2 98 0.0021 29.6 7.2 69 129-213 2-70 (265)
291 PRK14420 acylphosphatase; Prov 41.2 80 0.0017 25.4 5.6 59 102-164 17-75 (91)
292 PRK14804 ornithine carbamoyltr 41.1 1.3E+02 0.0027 29.9 8.1 62 199-273 213-276 (311)
293 PRK03868 glucose-6-phosphate i 40.1 68 0.0015 33.1 6.2 59 127-189 110-174 (410)
294 PF06057 VirJ: Bacterial virul 39.8 63 0.0014 30.3 5.3 80 41-143 2-82 (192)
295 cd01976 Nitrogenase_MoFe_alpha 39.7 4.4E+02 0.0095 27.1 12.2 192 45-281 175-416 (421)
296 TIGR01284 alt_nitrog_alph nitr 39.7 2.4E+02 0.0052 29.3 10.2 195 42-282 199-442 (457)
297 PRK14428 acylphosphatase; Prov 39.6 1.1E+02 0.0023 25.4 6.2 59 102-164 23-81 (97)
298 PF02670 DXP_reductoisom: 1-de 39.2 1.1E+02 0.0023 26.8 6.4 75 131-211 1-97 (129)
299 PF10087 DUF2325: Uncharacteri 39.0 1E+02 0.0022 24.8 6.0 51 160-211 3-55 (97)
300 COG4693 PchG Oxidoreductase (N 38.9 48 0.001 33.2 4.6 50 129-186 5-55 (361)
301 PRK02910 light-independent pro 38.9 3.1E+02 0.0066 29.1 11.0 32 42-73 158-194 (519)
302 PRK05234 mgsA methylglyoxal sy 38.3 2.6E+02 0.0056 24.6 8.8 33 38-71 2-36 (142)
303 PRK14442 acylphosphatase; Prov 38.0 96 0.0021 25.2 5.6 59 102-164 19-77 (91)
304 PRK14435 acylphosphatase; Prov 38.0 99 0.0021 25.0 5.7 59 102-164 17-75 (90)
305 PRK13602 putative ribosomal pr 37.9 52 0.0011 26.3 3.9 44 144-189 18-61 (82)
306 TIGR00243 Dxr 1-deoxy-D-xylulo 37.0 1.6E+02 0.0034 30.6 8.1 54 129-188 2-57 (389)
307 PRK14432 acylphosphatase; Prov 37.0 1.2E+02 0.0026 24.7 6.1 59 102-164 17-76 (93)
308 TIGR01921 DAP-DH diaminopimela 36.6 2E+02 0.0043 29.0 8.6 35 128-166 3-38 (324)
309 PRK13302 putative L-aspartate 36.2 1.6E+02 0.0035 28.3 7.8 71 127-213 5-76 (271)
310 PRK07634 pyrroline-5-carboxyla 36.1 1.1E+02 0.0024 28.1 6.5 70 128-212 4-74 (245)
311 PRK00973 glucose-6-phosphate i 36.0 85 0.0018 32.9 6.2 57 129-189 133-197 (446)
312 PRK14446 acylphosphatase; Prov 35.8 92 0.002 25.3 5.1 59 102-164 17-75 (88)
313 PRK10124 putative UDP-glucose 35.7 3E+02 0.0064 28.7 10.2 60 127-188 142-210 (463)
314 PF00205 TPP_enzyme_M: Thiamin 35.7 42 0.00091 28.3 3.3 44 171-214 29-87 (137)
315 TIGR03679 arCOG00187 arCOG0018 35.5 2E+02 0.0043 26.8 8.1 53 133-189 2-64 (218)
316 PRK10126 tyrosine phosphatase; 35.4 1.2E+02 0.0025 26.4 6.2 81 129-215 3-86 (147)
317 PRK14421 acylphosphatase; Prov 35.3 1.5E+02 0.0033 24.6 6.5 59 102-164 19-77 (99)
318 PRK08961 bifunctional aspartat 35.0 3.7E+02 0.0081 30.4 11.4 34 43-76 323-359 (861)
319 PRK06683 hypothetical protein; 34.9 53 0.0011 26.3 3.6 50 134-189 12-61 (82)
320 TIGR01282 nifD nitrogenase mol 34.9 2.1E+02 0.0045 30.0 8.9 112 128-283 335-453 (466)
321 smart00226 LMWPc Low molecular 33.7 1.3E+02 0.0029 25.4 6.1 77 133-215 2-82 (140)
322 PRK14448 acylphosphatase; Prov 33.6 1.7E+02 0.0037 23.7 6.4 60 101-164 16-75 (90)
323 PF01250 Ribosomal_S6: Ribosom 33.1 1.2E+02 0.0026 24.1 5.4 53 52-107 18-79 (92)
324 TIGR00268 conserved hypothetic 33.1 1.1E+02 0.0024 29.0 6.0 56 128-188 12-72 (252)
325 TIGR00512 salvage_mtnA S-methy 33.0 3.7E+02 0.0081 27.1 10.0 80 122-211 140-232 (331)
326 PF04359 DUF493: Protein of un 32.7 94 0.002 24.6 4.7 64 42-112 10-78 (85)
327 PF04592 SelP_N: Selenoprotein 32.6 1.3E+02 0.0029 29.1 6.4 91 119-215 12-121 (238)
328 PRK14443 acylphosphatase; Prov 32.4 1.6E+02 0.0036 24.1 6.1 59 102-164 19-78 (93)
329 TIGR01182 eda Entner-Doudoroff 32.4 4.3E+02 0.0092 24.8 11.4 117 43-210 10-127 (204)
330 PF10741 T2SM_b: Type II secre 32.2 2.2E+02 0.0048 23.4 7.0 56 54-112 17-73 (110)
331 TIGR02853 spore_dpaA dipicolin 31.7 2.7E+02 0.0058 27.1 8.6 108 128-286 151-258 (287)
332 PF05088 Bac_GDH: Bacterial NA 31.5 1.1E+02 0.0023 37.2 6.6 37 41-77 16-52 (1528)
333 TIGR01133 murG undecaprenyldip 31.4 1.8E+02 0.0039 27.6 7.3 77 129-212 1-98 (348)
334 TIGR00166 S6 ribosomal protein 31.4 2.6E+02 0.0056 22.4 7.2 40 53-93 18-66 (93)
335 PF14257 DUF4349: Domain of un 31.0 1.5E+02 0.0033 28.1 6.6 64 43-108 52-116 (262)
336 cd01965 Nitrogenase_MoFe_beta_ 30.7 2.8E+02 0.0062 28.3 9.0 111 97-215 255-382 (428)
337 TIGR01861 ANFD nitrogenase iro 30.6 4.7E+02 0.01 27.9 10.8 162 44-215 204-409 (513)
338 PRK00453 rpsF 30S ribosomal pr 30.3 1.8E+02 0.0038 24.1 6.1 42 52-94 19-69 (108)
339 COG0527 LysC Aspartokinases [A 30.2 2.2E+02 0.0047 29.9 8.1 36 40-75 381-419 (447)
340 KOG2805 tRNA (5-methylaminomet 29.9 1.7E+02 0.0038 29.8 6.9 58 127-188 4-74 (377)
341 TIGR00420 trmU tRNA (5-methyla 29.9 99 0.0021 31.2 5.4 55 129-188 1-70 (352)
342 CHL00123 rps6 ribosomal protei 29.8 3.1E+02 0.0068 22.4 9.7 50 44-94 10-73 (97)
343 PF09419 PGP_phosphatase: Mito 29.8 1.5E+02 0.0033 27.0 6.1 71 141-212 63-143 (168)
344 PRK13601 putative L7Ae-like ri 29.8 75 0.0016 25.6 3.6 49 134-188 9-57 (82)
345 PRK06079 enoyl-(acyl carrier p 29.6 1.7E+02 0.0037 26.9 6.6 38 36-73 1-39 (252)
346 PRK00286 xseA exodeoxyribonucl 29.6 6.3E+02 0.014 25.9 14.4 186 22-215 23-233 (438)
347 COG1184 GCD2 Translation initi 28.8 2.7E+02 0.0058 27.9 8.0 69 137-213 127-196 (301)
348 COG3007 Uncharacterized paraqu 28.7 4.2E+02 0.0092 27.0 9.3 96 124-221 37-150 (398)
349 PRK06015 keto-hydroxyglutarate 28.5 4.9E+02 0.011 24.3 11.6 117 43-210 6-123 (201)
350 TIGR00237 xseA exodeoxyribonuc 28.5 6.8E+02 0.015 25.9 14.5 184 22-215 17-228 (432)
351 cd03109 DTBS Dethiobiotin synt 28.3 3.7E+02 0.008 22.8 8.7 116 49-186 9-131 (134)
352 PF06877 RraB: Regulator of ri 27.6 1.1E+02 0.0025 24.6 4.5 70 46-116 29-98 (104)
353 COG3453 Uncharacterized protei 27.6 1.2E+02 0.0027 26.7 4.8 56 158-213 29-94 (130)
354 TIGR03646 YtoQ_fam YtoQ family 27.4 3.2E+02 0.007 24.4 7.4 108 133-266 3-113 (144)
355 PLN02891 IMP cyclohydrolase 27.3 90 0.0019 33.7 4.7 43 27-73 10-52 (547)
356 PRK09536 btuD corrinoid ABC tr 27.2 3.2E+02 0.007 28.1 8.6 75 134-214 271-348 (402)
357 cd00293 USP_Like Usp: Universa 27.2 2.9E+02 0.0064 21.3 10.2 37 178-215 66-104 (130)
358 PF04007 DUF354: Protein of un 27.0 4.5E+02 0.0098 26.4 9.4 77 129-212 1-91 (335)
359 TIGR03590 PseG pseudaminic aci 27.0 3.2E+02 0.0068 26.2 8.1 79 128-213 170-250 (279)
360 cd06281 PBP1_LacI_like_5 Ligan 26.9 3.4E+02 0.0074 24.6 8.1 73 98-188 13-86 (269)
361 PRK05925 aspartate kinase; Pro 26.8 2.5E+02 0.0054 29.3 7.8 61 41-114 371-433 (440)
362 COG2179 Predicted hydrolase of 26.6 2E+02 0.0043 26.7 6.1 64 141-212 50-117 (175)
363 TIGR03022 WbaP_sugtrans Undeca 26.6 4.7E+02 0.01 26.7 9.8 36 128-165 125-161 (456)
364 PF01081 Aldolase: KDPG and KH 26.3 5.3E+02 0.012 24.0 11.2 117 44-210 10-127 (196)
365 PF08660 Alg14: Oligosaccharid 26.3 3E+02 0.0064 24.8 7.3 86 132-218 2-106 (170)
366 cd03466 Nitrogenase_NifN_2 Nit 26.2 6.1E+02 0.013 26.0 10.5 80 128-214 300-382 (429)
367 PRK07114 keto-hydroxyglutarate 26.2 5.7E+02 0.012 24.3 11.7 121 44-210 17-138 (222)
368 PF01408 GFO_IDH_MocA: Oxidore 25.8 87 0.0019 25.2 3.5 64 142-213 54-120 (120)
369 TIGR00511 ribulose_e2b2 ribose 25.6 3.7E+02 0.0079 26.5 8.4 70 133-210 119-189 (301)
370 PRK13980 NAD synthetase; Provi 25.3 3.1E+02 0.0068 26.1 7.7 58 128-188 30-92 (265)
371 PRK09977 putative Mg(2+) trans 25.3 4.3E+02 0.0094 25.0 8.5 61 42-107 144-204 (215)
372 KOG3076 5'-phosphoribosylglyci 24.9 4.3E+02 0.0094 25.0 8.1 61 123-188 30-94 (206)
373 PRK08293 3-hydroxybutyryl-CoA 24.7 6.1E+02 0.013 24.1 9.8 69 198-270 78-148 (287)
374 PRK01018 50S ribosomal protein 24.6 93 0.002 25.6 3.4 47 134-188 17-65 (99)
375 PRK13015 3-dehydroquinate dehy 24.4 3.2E+02 0.0069 24.6 6.9 100 96-215 25-129 (146)
376 PHA00159 endonuclease I 24.2 1.4E+02 0.0031 26.8 4.6 40 145-186 79-122 (148)
377 PRK12326 preprotein translocas 24.1 1.2E+02 0.0025 34.2 4.9 87 108-201 378-471 (764)
378 PRK05395 3-dehydroquinate dehy 24.1 3.1E+02 0.0067 24.7 6.8 99 97-215 26-129 (146)
379 PF02441 Flavoprotein: Flavopr 24.1 1.1E+02 0.0024 25.7 4.0 35 129-165 1-37 (129)
380 PRK14434 acylphosphatase; Prov 23.8 2.9E+02 0.0064 22.4 6.2 59 102-164 17-78 (92)
381 PRK15469 ghrA bifunctional gly 23.7 4.5E+02 0.0097 25.9 8.6 114 197-345 183-302 (312)
382 COG0351 ThiD Hydroxymethylpyri 23.6 6.9E+02 0.015 24.5 9.7 65 41-115 3-73 (263)
383 PRK14478 nitrogenase molybdenu 23.5 8E+02 0.017 25.7 10.9 78 128-215 324-404 (475)
384 PRK12904 preprotein translocas 23.5 1.2E+02 0.0026 34.4 5.1 130 64-201 340-474 (830)
385 PTZ00345 glycerol-3-phosphate 23.5 2.1E+02 0.0046 29.1 6.4 82 127-211 10-100 (365)
386 PRK07714 hypothetical protein; 23.4 1.1E+02 0.0024 25.1 3.6 59 134-203 19-77 (100)
387 COG0313 Predicted methyltransf 23.4 5.5E+02 0.012 25.5 8.9 74 134-215 55-139 (275)
388 PRK09466 metL bifunctional asp 23.2 9.1E+02 0.02 27.4 11.8 82 42-138 317-401 (810)
389 PRK14424 acylphosphatase; Prov 23.2 3E+02 0.0065 22.6 6.1 60 101-164 21-80 (94)
390 PRK11391 etp phosphotyrosine-p 23.1 2E+02 0.0043 25.0 5.4 81 129-215 3-86 (144)
391 PRK14477 bifunctional nitrogen 23.0 6.9E+02 0.015 28.6 11.0 110 127-281 319-435 (917)
392 smart00851 MGS MGS-like domain 22.9 1.8E+02 0.0039 22.8 4.7 38 144-185 46-89 (90)
393 cd00553 NAD_synthase NAD+ synt 22.8 4E+02 0.0086 25.1 7.8 58 128-188 23-85 (248)
394 cd01424 MGS_CPS_II Methylglyox 22.7 1.6E+02 0.0034 24.0 4.5 39 144-186 58-100 (110)
395 TIGR00963 secA preprotein tran 22.6 1.1E+02 0.0023 34.3 4.4 138 64-209 315-458 (745)
396 PRK11175 universal stress prot 22.5 2E+02 0.0044 27.1 5.8 71 173-264 228-300 (305)
397 PF04273 DUF442: Putative phos 22.5 2.7E+02 0.0059 23.4 5.9 31 158-188 28-64 (110)
398 cd00532 MGS-like MGS-like doma 22.3 2.5E+02 0.0055 23.1 5.7 29 43-72 2-30 (112)
399 PRK06372 translation initiatio 22.2 3.9E+02 0.0084 26.0 7.7 69 132-210 89-157 (253)
400 PF01890 CbiG_C: Cobalamin syn 22.2 3.1E+02 0.0068 23.3 6.3 55 134-188 6-65 (121)
401 PF02603 Hpr_kinase_N: HPr Ser 22.1 65 0.0014 27.5 2.1 56 129-188 49-112 (127)
402 cd01997 GMP_synthase_C The C-t 22.1 2.3E+02 0.0049 28.0 6.2 56 130-189 1-62 (295)
403 COG3961 Pyruvate decarboxylase 22.0 2.6E+02 0.0057 30.2 6.8 60 155-215 212-287 (557)
404 cd01977 Nitrogenase_VFe_alpha 22.0 7.7E+02 0.017 25.0 10.2 29 43-71 163-192 (415)
405 PRK09084 aspartate kinase III; 21.9 3.2E+02 0.0069 28.4 7.5 60 41-113 383-445 (448)
406 cd01713 PAPS_reductase This do 21.8 2.5E+02 0.0055 23.4 5.8 58 130-189 1-63 (173)
407 cd01814 NTGP5 Ubiquitin-like N 21.6 33 0.00073 29.5 0.2 54 292-353 9-68 (113)
408 PTZ00347 phosphomethylpyrimidi 21.5 8.7E+02 0.019 25.4 10.7 72 31-114 223-299 (504)
409 COG2243 CobF Precorrin-2 methy 21.5 7.4E+02 0.016 23.9 10.6 101 99-215 69-177 (234)
410 PRK14439 acylphosphatase; Prov 21.4 2.8E+02 0.006 25.4 6.0 60 101-164 89-149 (163)
411 TIGR03677 rpl7ae 50S ribosomal 21.3 1.6E+02 0.0035 25.0 4.4 28 171-203 59-86 (117)
412 PF11071 DUF2872: Protein of u 21.2 2.7E+02 0.0059 24.8 5.7 97 144-266 13-110 (141)
413 PF01206 TusA: Sulfurtransfera 21.2 1.9E+02 0.0042 21.4 4.4 40 44-88 29-68 (70)
414 PF01008 IF-2B: Initiation fac 21.2 2.2E+02 0.0048 27.1 5.8 75 131-213 109-185 (282)
415 cd03710 BipA_TypA_C BipA_TypA_ 21.1 3E+02 0.0065 21.2 5.6 63 44-115 5-67 (79)
416 TIGR01088 aroQ 3-dehydroquinat 21.1 4.2E+02 0.009 23.7 7.0 100 96-215 23-127 (141)
417 cd00466 DHQase_II Dehydroquina 21.0 3.8E+02 0.0083 23.9 6.7 100 96-215 23-127 (140)
418 PRK10799 metal-binding protein 20.9 6E+02 0.013 24.0 8.7 134 53-203 76-231 (247)
419 cd05565 PTS_IIB_lactose PTS_II 20.9 1.6E+02 0.0034 24.5 4.1 36 172-211 19-54 (99)
420 TIGR00486 YbgI_SA1388 dinuclea 20.9 6.6E+02 0.014 23.8 8.9 92 96-203 138-233 (249)
421 TIGR01283 nifE nitrogenase mol 20.8 9.3E+02 0.02 24.9 10.6 30 43-72 198-228 (456)
422 COG2403 Predicted GTPase [Gene 20.7 2.6E+02 0.0057 29.2 6.4 77 126-211 4-89 (449)
423 COG0345 ProC Pyrroline-5-carbo 20.7 4E+02 0.0087 26.0 7.5 70 129-214 2-72 (266)
424 TIGR00552 nadE NAD+ synthetase 20.5 5.2E+02 0.011 24.3 8.1 57 128-188 22-84 (250)
425 PRK05948 precorrin-2 methyltra 20.4 5.7E+02 0.012 24.3 8.4 102 98-215 70-181 (238)
426 PF01210 NAD_Gly3P_dh_N: NAD-d 20.3 69 0.0015 28.0 1.9 75 130-215 1-80 (157)
427 PF02540 NAD_synthase: NAD syn 20.3 3.4E+02 0.0074 25.8 6.8 58 129-188 19-80 (242)
428 PF02576 DUF150: Uncharacteris 20.3 4E+02 0.0086 23.0 6.7 54 59-115 2-55 (141)
429 PF02601 Exonuc_VII_L: Exonucl 20.1 8.1E+02 0.017 23.8 9.9 92 123-215 9-116 (319)
430 PRK02797 4-alpha-L-fucosyltran 20.0 4.4E+02 0.0096 26.7 7.7 93 129-230 145-246 (322)
431 KOG0081 GTPase Rab27, small G 20.0 2E+02 0.0043 26.8 4.8 19 171-189 145-163 (219)
No 1
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.7e-78 Score=569.23 Aligned_cols=281 Identities=45% Similarity=0.711 Sum_probs=268.9
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 36 ~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
|++.+++++||++|||++||||+||++|+++||||++++||.|..+|+||||++|..+....+.++|+++|++++++|||
T Consensus 1 m~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m 80 (287)
T COG0788 1 MSNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGM 80 (287)
T ss_pred CCCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCc
Confidence 56777999999999999999999999999999999999999998899999999999988778899999999999999997
Q ss_pred ccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC-CCCChh
Q 018502 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER 194 (355)
Q Consensus 116 ~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~-~~~~~~ 194 (355)
.|++++.+.++||++|+|+.+|||.|||++|+.|+|+++|++|||||++ +...++++||||++++ +++++.
T Consensus 81 ---~~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~ 152 (287)
T COG0788 81 ---DWRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKA 152 (287)
T ss_pred ---eeEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcch
Confidence 6999999999999999999999999999999999999999999999974 7999999999999999 566543
Q ss_pred --HHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCC
Q 018502 195 --EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (355)
Q Consensus 195 --~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~y 270 (355)
+++++++++ ++|++|||+||| |||++|++++++++|||||||||+|
T Consensus 153 e~E~~~~~ll~~~~~DlvVLARYMq------------------------------ILS~d~~~~~~g~iINIHHSFLPaF 202 (287)
T COG0788 153 EAEARLLELLEEYGADLVVLARYMQ------------------------------ILSPDFVERFPGKIINIHHSFLPAF 202 (287)
T ss_pred HHHHHHHHHHHHhCCCEEeehhhHh------------------------------hCCHHHHHhccCcEEEecccccccC
Confidence 467888887 799999999999 9999999999999999999999999
Q ss_pred CCchHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502 271 KGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 350 (355)
Q Consensus 271 rG~~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~ 350 (355)
.|++||++|+++|+|.+|+|+|||++++|+||||.|+.++|+|.+|.++|..+.+++|++.|.+|+++++++|++.++ |
T Consensus 203 ~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~Rv~v~g-n 281 (287)
T COG0788 203 IGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDRVFVNG-N 281 (287)
T ss_pred CCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcceEEEeC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred ceeeC
Q 018502 351 KTVVF 355 (355)
Q Consensus 351 ~tvvf 355 (355)
|||||
T Consensus 282 kTVVf 286 (287)
T COG0788 282 KTVVF 286 (287)
T ss_pred eEEec
Confidence 99998
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=5.5e-73 Score=544.55 Aligned_cols=274 Identities=45% Similarity=0.771 Sum_probs=257.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH-HHhhhhhccceee
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~-la~~lg~~~~~~~ 121 (355)
+||||+|||||||||+||++|+++||||+|++|+++..+|+||||++|+.++...+.++|+++|++ +++++|| .|+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l---~i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEM---TWE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCC---EEE
Confidence 489999999999999999999999999999999998788999999999998755789999999999 9999998 689
Q ss_pred eCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC-C--hhHHHH
Q 018502 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEEL 198 (355)
Q Consensus 122 ~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~~~~~ 198 (355)
+++.++++|||||+||.||||++|+++++.|+++++|++|+|||++ +..+|+++|||+++++.+. + ..++++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHED-----LRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChh-----HHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 9999999999999999999999999999999999999999999963 5668999999999887432 2 124567
Q ss_pred HHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHH
Q 018502 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (355)
Q Consensus 199 ~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~ 276 (355)
.++++ ++|++|+||||+ |||+++++.|++++||+||||||+|||++|+
T Consensus 153 ~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iINiHpSLLP~f~G~~p~ 202 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQ------------------------------ILSPDFVKRYPNKIINIHHSFLPAFIGANPY 202 (280)
T ss_pred HHHHHHhCCCEEEEeCchh------------------------------hCCHHHHhhccCCEEEecCCcCCCCCCcCHH
Confidence 88776 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceeeC
Q 018502 277 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355 (355)
Q Consensus 277 ~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvvf 355 (355)
+||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||+++|.+|++++|+++++++++.++++++.+++ +|||||
T Consensus 203 ~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~vf 280 (280)
T TIGR00655 203 QRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYE-NKTVVF 280 (280)
T ss_pred HHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-CeeEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 999998
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=1.5e-71 Score=536.63 Aligned_cols=278 Identities=38% Similarity=0.638 Sum_probs=257.7
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCChHHHHHHHHHHHhhhhhcc
Q 018502 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFKLSKMFNAMR 117 (355)
Q Consensus 39 ~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~-~~~~~~~~L~~~l~~la~~lg~~~ 117 (355)
++.++||||+|||||||||+||++|+++||||+|++|+.+...|.||||+++... ....+.++|+++|+++++++||
T Consensus 6 ~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l-- 83 (289)
T PRK13010 6 RSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDM-- 83 (289)
T ss_pred cccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCC--
Confidence 4477999999999999999999999999999999999877778999999998833 2256899999999999999998
Q ss_pred ceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC-C--hh
Q 018502 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ER 194 (355)
Q Consensus 118 ~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~ 194 (355)
.|++...+.++|||||+||+||||++|++++++|+++++|++|+||+++ +.++|+++|||+++++.+. + ..
T Consensus 84 -~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~-----~~~~A~~~gIp~~~~~~~~~~~~~~ 157 (289)
T PRK13010 84 -QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD-----LQPLAVQHDIPFHHLPVTPDTKAQQ 157 (289)
T ss_pred -eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChh-----HHHHHHHcCCCEEEeCCCcccccch
Confidence 5888888889999999999999999999999999999999999999963 5799999999999987432 2 22
Q ss_pred HHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 195 EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 195 ~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
++++.++++ ++|++|+||||+ |||+++++.|++++||+||||||+|||
T Consensus 158 ~~~~~~~l~~~~~Dlivlagym~------------------------------il~~~~l~~~~~~iiNiHpSlLP~f~G 207 (289)
T PRK13010 158 EAQILDLIETSGAELVVLARYMQ------------------------------VLSDDLSRKLSGRAINIHHSFLPGFKG 207 (289)
T ss_pred HHHHHHHHHHhCCCEEEEehhhh------------------------------hCCHHHHhhccCCceeeCcccCCCCCC
Confidence 456788777 899999999999 999999999999999999999999999
Q ss_pred chHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCce
Q 018502 273 GKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKT 352 (355)
Q Consensus 273 ~~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~t 352 (355)
++|++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||.++|.+|++++|++++++++++++++++..++ +||
T Consensus 208 ~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~~~~~~~~-~~~ 286 (289)
T PRK13010 208 ARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFING-DRT 286 (289)
T ss_pred CCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEeC-CEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 999
Q ss_pred eeC
Q 018502 353 VVF 355 (355)
Q Consensus 353 vvf 355 (355)
|||
T Consensus 287 ~vf 289 (289)
T PRK13010 287 VVF 289 (289)
T ss_pred EEC
Confidence 998
No 4
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=3.9e-70 Score=521.28 Aligned_cols=267 Identities=83% Similarity=1.366 Sum_probs=251.9
Q ss_pred HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCC
Q 018502 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (355)
Q Consensus 59 VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~ 138 (355)
||++|+++||||++++||.|..+|+||||++|+.++...+.++|+++|++++++|+|.+|+|++++.++++|||||+||.
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~ 80 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ 80 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence 58899999999999999999999999999999987544678999999999999999877789999999999999999999
Q ss_pred chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC-CCChhHHHHHHHhcCCCEEEEEeecccc
Q 018502 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQNTDFLVLARYMQPV 217 (355)
Q Consensus 139 g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~-~~~~~~~~~~~~l~~~Dlivla~y~~~~ 217 (355)
||||++|++++++|+|+++|++|+|||++++.+++.++|+++|||+++++. +.+.++++++++++++|++|+|||||
T Consensus 81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~-- 158 (268)
T PLN02828 81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQ-- 158 (268)
T ss_pred ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehH--
Confidence 999999999999999999999999999876678999999999999998884 33455667788777899999999999
Q ss_pred chhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHhCCcEeEEEEEEecCc
Q 018502 218 PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTEE 297 (355)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~G~~~~G~T~H~v~~~ 297 (355)
|||+++++.|++++|||||||||+|||++|++||+.+|++.+|+|+|+|+++
T Consensus 159 ----------------------------IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~ 210 (268)
T PLN02828 159 ----------------------------ILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEE 210 (268)
T ss_pred ----------------------------hCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceeeC
Q 018502 298 LDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355 (355)
Q Consensus 298 ~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvvf 355 (355)
+|+||||.|+.+||.++||.++|.+|++++|++++++++++++++++++++.||||||
T Consensus 211 lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~~~~~~~~~~~tvvf 268 (268)
T PLN02828 211 LDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELRVLPYGTNKTVVF 268 (268)
T ss_pred CCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcCCCcEEeC
Confidence 9999999999999999999999999999999999999999999999999944999998
No 5
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.8e-68 Score=512.39 Aligned_cols=280 Identities=39% Similarity=0.644 Sum_probs=260.3
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 36 ~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
||..++++++||+|+||||||++||++|+++|+||+|++|+.+...+.|+|+++++.|+ ..+.++|+++|+++++++++
T Consensus 1 ~~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK13011 1 MSRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGM 79 (286)
T ss_pred CCCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCc
Confidence 67778999999999999999999999999999999999999777899999999999886 56799999999999999998
Q ss_pred ccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC-Ch-
Q 018502 116 MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NE- 193 (355)
Q Consensus 116 ~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~~- 193 (355)
.|++...++++|||||+||.|+||++|++++++|+++++|++|+||+++ +..+|+++|||+++++.+. +.
T Consensus 80 ---~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~-----~~~lA~~~gIp~~~~~~~~~~~~ 151 (286)
T PRK13011 80 ---QWELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPD-----LEPLAAWHGIPFHHFPITPDTKP 151 (286)
T ss_pred ---EEEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCcc-----HHHHHHHhCCCEEEeCCCcCchh
Confidence 5778888889999999999999999999999999999999999999853 6777999999999886432 21
Q ss_pred -hHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCC
Q 018502 194 -REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSF 270 (355)
Q Consensus 194 -~~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~y 270 (355)
.++++.++++ ++|++|++|||+ |||+++++.|++++||+||||||+|
T Consensus 152 ~~~~~~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~~ 201 (286)
T PRK13011 152 QQEAQVLDVVEESGAELVVLARYMQ------------------------------VLSPELCRKLAGRAINIHHSFLPGF 201 (286)
T ss_pred hhHHHHHHHHHHhCcCEEEEeChhh------------------------------hCCHHHHhhccCCeEEeccccCCCC
Confidence 2346777776 899999999999 9999999999999999999999999
Q ss_pred CCchHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502 271 KGGKPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 350 (355)
Q Consensus 271 rG~~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~ 350 (355)
||++|++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||.++|.+|++++|++++++++++++++++..++ +
T Consensus 202 rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~~~~~~~~-~ 280 (286)
T PRK13011 202 KGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRVFLNG-N 280 (286)
T ss_pred CCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeC
Q 018502 351 KTVVF 355 (355)
Q Consensus 351 ~tvvf 355 (355)
||+||
T Consensus 281 ~~~~~ 285 (286)
T PRK13011 281 RTVVF 285 (286)
T ss_pred EEEeC
Confidence 99998
No 6
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=7.7e-67 Score=503.24 Aligned_cols=276 Identities=48% Similarity=0.783 Sum_probs=256.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhcccee
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVV 120 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~ 120 (355)
+++++||+|+||||||++||++|+++||||+|++|+.+..+|.|+|++.++++....+.++|+++|+++++++++ +|
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l---~i 81 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEM---DW 81 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCC---EE
Confidence 689999999999999999999999999999999999855689999999999943355799999999999999998 57
Q ss_pred eeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC-C--hhHHH
Q 018502 121 RVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--EREEE 197 (355)
Q Consensus 121 ~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~-~--~~~~~ 197 (355)
++++..+++|||||+||.|+||++|+++++.|+++++|++|+||++ .+..+|+++|||+++++.+. + ..+.+
T Consensus 82 ~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~-----~~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK06027 82 RLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-----DLRSLVERFGIPFHHVPVTKETKAEAEAR 156 (286)
T ss_pred EEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh-----hHHHHHHHhCCCEEEeccCccccchhHHH
Confidence 8899999999999999999999999999999999999999999985 35677999999999877432 2 22456
Q ss_pred HHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchH
Q 018502 198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKP 275 (355)
Q Consensus 198 ~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p 275 (355)
+.++++ ++|++|++|||+ |||+++++.|++++||+||||||+|||++|
T Consensus 157 ~~~~l~~~~~Dlivlagy~~------------------------------il~~~~l~~~~~~iiNiHpSLLP~yrG~~~ 206 (286)
T PRK06027 157 LLELIDEYQPDLVVLARYMQ------------------------------ILSPDFVARFPGRIINIHHSFLPAFKGAKP 206 (286)
T ss_pred HHHHHHHhCCCEEEEecchh------------------------------hcCHHHHhhccCCceecCcccCCCCCCCCH
Confidence 778776 899999999999 999999999999999999999999999999
Q ss_pred HHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceeeC
Q 018502 276 AKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVVF 355 (355)
Q Consensus 276 ~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvvf 355 (355)
++||+.+|++.+|+|+|+|++++|+||||.|+.+||.++||.++|.+|++++|++++++++++++++++...+ +|++||
T Consensus 207 ~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~~~~~-~~~~~~ 285 (286)
T PRK06027 207 YHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYG-NKTVVF 285 (286)
T ss_pred HHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEcC-CEEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 899987
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-47 Score=344.91 Aligned_cols=192 Identities=35% Similarity=0.496 Sum_probs=179.6
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC-h---hHHHHHHHhc-
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ- 203 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~---~~~~~~~~l~- 203 (355)
+||+||+||+||||++++++++.|.++++|++|+||++ +++++++|+++|||++.+.+++. . .++++.+.+.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~---~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKA---DAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999994 68999999999999998886543 2 2467888876
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHh
Q 018502 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (355)
Q Consensus 204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~ 282 (355)
++|++||||||+ ||++.|+++|++++|||||||||.|+|.+.+.+|+++
T Consensus 78 ~~~dlvvLAGyMr------------------------------IL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~a 127 (200)
T COG0299 78 YGPDLVVLAGYMR------------------------------ILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEA 127 (200)
T ss_pred cCCCEEEEcchHH------------------------------HcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceee
Q 018502 283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 354 (355)
Q Consensus 283 G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvv 354 (355)
|++.+|+|+|||++++|+||||.|..+||.++||.++|.+|+++.|+++++++++++.+|++...+ |++++
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~~~-~~~~~ 198 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKIEG-GRVIL 198 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcceecC-ceEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999875 77654
No 8
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=326.70 Aligned_cols=194 Identities=43% Similarity=0.630 Sum_probs=181.1
Q ss_pred CCceEEEEEeCCchhHHHHHhhhhcCCC--CeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC-hh---HHHHHH
Q 018502 127 PKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-ER---EEELLE 200 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~~~l--~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~---~~~~~~ 200 (355)
++.|++|++||.|+||++|+++.++|.+ +++|+.|+||. .++..+++|+++|||+.+++++.- .| +.++.+
T Consensus 5 ~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~ 81 (206)
T KOG3076|consen 5 RRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELAE 81 (206)
T ss_pred cceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHHH
Confidence 5789999999999999999999999999 79999999998 467899999999999999986421 12 346666
Q ss_pred Hhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHH
Q 018502 201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQ 278 (355)
Q Consensus 201 ~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~ 278 (355)
.+. ++|++++||||+ |||++|++.|+.++|||||||||+|+|.+++.+
T Consensus 82 ~l~e~~~d~v~lAG~M~------------------------------iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~ 131 (206)
T KOG3076|consen 82 VLLELGTDLVCLAGYMR------------------------------ILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQ 131 (206)
T ss_pred HHHHhCCCEEEehhhHH------------------------------HcCHHHHhhcccceEecccccccccCCchHHHH
Confidence 655 899999999999 999999999999999999999999999999999
Q ss_pred HHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCcee
Q 018502 279 AFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTV 353 (355)
Q Consensus 279 A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tv 353 (355)
|++.|++.+|+|+|||++++|+|+||.|+.+||.++||++++.+|+++.|+.++++|++.++++++++++.+||+
T Consensus 132 Aleagv~~~GctvHfV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~~~~~~~~~~ 206 (206)
T KOG3076|consen 132 ALEAGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRVLPYETGRTV 206 (206)
T ss_pred HHHhccccccceEEEehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcceeCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885
No 9
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=7.6e-44 Score=329.44 Aligned_cols=191 Identities=25% Similarity=0.443 Sum_probs=174.2
Q ss_pred eEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC----ChhHHHHHHHhc--
Q 018502 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ-- 203 (355)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~-- 203 (355)
||+||+||+|+||++|++++++|+++++|++|+||++ .+.++++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~---~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKP---GCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCC---CChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 7999999999999999999999999999999999984 5688999999999999877432 123567777776
Q ss_pred CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc----hHHHHH
Q 018502 204 NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG----KPAKQA 279 (355)
Q Consensus 204 ~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~----~p~~~A 279 (355)
++|++|+++||+ +||+++++.++.++||+|||+||+|||+ .|++|+
T Consensus 78 ~~Dliv~agy~~------------------------------il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a 127 (207)
T PLN02331 78 GVDFVLLAGYLK------------------------------LIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKA 127 (207)
T ss_pred CCCEEEEeCcch------------------------------hCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHH
Confidence 899999999999 9999999999999999999999999995 688887
Q ss_pred H-HhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCceee
Q 018502 280 F-DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMNKTVV 354 (355)
Q Consensus 280 ~-~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~~tvv 354 (355)
+ .+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|.+|+.++|++++.++++.+++|++...+ .+|++
T Consensus 128 ~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~-~~~~~ 202 (207)
T PLN02331 128 VIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWRE-DGVPL 202 (207)
T ss_pred HHHcCCCeEEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCC-CeeEE
Confidence 5 58999999999999999999999999999999999999999999999999999999999999988775 66654
No 10
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=1.4e-43 Score=323.63 Aligned_cols=183 Identities=33% Similarity=0.519 Sum_probs=170.1
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC----ChhHHHHHHHhc-
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~- 203 (355)
+|||||+||+|||++.++++++++.++++|++|++|++ .+.+.++|+++|||++.++.+. +..++++.+.++
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~---~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKP---DAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCc---cchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 58999999999999999999999999999999999985 3678999999999999866321 122567888886
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHh
Q 018502 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (355)
Q Consensus 204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~ 282 (355)
++|++|+++||+ |+|+++++.++.++||+|||+||+|||++|++||+.+
T Consensus 78 ~~~D~iv~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (190)
T TIGR00639 78 HEVDLVVLAGFMR------------------------------ILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEA 127 (190)
T ss_pred cCCCEEEEeCcch------------------------------hCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHc
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Q 018502 283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRV 344 (355)
Q Consensus 283 G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~ 344 (355)
|++.+|+|+|+|++++|+||||.|+.++|+++||.++|++|+.+++++++.++++.+++|++
T Consensus 128 g~~~tGvTih~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~ 189 (190)
T TIGR00639 128 GVKESGCTVHYVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189 (190)
T ss_pred CCCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 11
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=1.1e-42 Score=319.81 Aligned_cols=188 Identities=35% Similarity=0.485 Sum_probs=172.5
Q ss_pred CceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCC-CC---hhHHHHHHHhc
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ 203 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---~~~~~~~~~l~ 203 (355)
++|||||+||.|+|+++++++++++.++++|++||||++ ++.+.++|+++|||++.++.. .. ..++++.+.++
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~---~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP---DAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc---cchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 379999999999999999999999999999999999984 467899999999999886632 11 12456777775
Q ss_pred --CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHH
Q 018502 204 --NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFD 281 (355)
Q Consensus 204 --~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~ 281 (355)
++|++|+++|++ |+|+++++.++.++||+|||+||+|||++|++||+.
T Consensus 78 ~~~~D~iv~~~~~~------------------------------ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~ 127 (200)
T PRK05647 78 AYQPDLVVLAGFMR------------------------------ILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALE 127 (200)
T ss_pred HhCcCEEEhHHhhh------------------------------hCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHH
Confidence 899999999999 999999999999999999999999999999999999
Q ss_pred hCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 018502 282 AGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 348 (355)
Q Consensus 282 ~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~ 348 (355)
+|++.+|+|+|+|++++|+||||.|+.++|.++||.++|+.|+.+++.+++.++++.+.+|++...+
T Consensus 128 ~g~~~tG~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~ 194 (200)
T PRK05647 128 AGVKVHGCTVHFVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKLEG 194 (200)
T ss_pred cCCCeEEEEEEEEcCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999987653
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=8.5e-40 Score=321.49 Aligned_cols=189 Identities=24% Similarity=0.361 Sum_probs=169.9
Q ss_pred CCCCceEEEEEeCC--chhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-------CchHHHHHHHCCCCeEEeCCCCChhH
Q 018502 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENERE 195 (355)
Q Consensus 125 ~~~~~riavl~S~~--g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~ 195 (355)
.++++||++|+|+. -+||++|+++.+++..+++|++|+|++++.. .+++.++|+++|||++++..+.+.++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 46889999999987 4799999999888888899999999987642 24799999999999654432223344
Q ss_pred HHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 196 EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 196 ~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
+++++.++ ++|++|+++||+ |||+++++.++++|||+||||||+|||+
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~------------------------------ilp~~~l~~~~~g~iNiHpSLLP~yRG~ 132 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN------------------------------ILPQKFLDIPKLGTVNIHPSLLPLYRGA 132 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh------------------------------hcCHHHHhhccCCEEEEecccccCCCCc
Confidence 56666665 899999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018502 274 KPAKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELR 343 (355)
Q Consensus 274 ~p~~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~ 343 (355)
+|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||..+|.+|+.+++++++.+++..+.+|.
T Consensus 133 ~pi~~ai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~ 202 (334)
T PLN02285 133 APVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGS 202 (334)
T ss_pred CHHHHHHHcCCCcEEEEEEEECCCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875
No 13
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=6.1e-39 Score=289.34 Aligned_cols=175 Identities=34% Similarity=0.494 Sum_probs=150.6
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC----ChhHHHHHHHhc-
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NEREEELLELVQ- 203 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~~~~~~~~~l~- 203 (355)
+||+||+||.++|+..+|++++.+..++++++|+|++++ ......+.+.++|...+.... +..++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDK---PRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTT---THHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccc---cccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 699999999999999999999888777899999999875 356789999999998776321 123567888886
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHh
Q 018502 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (355)
Q Consensus 204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~ 282 (355)
++|++|+++|++ ++|+++++.++.++||+|||+||+|||++|++||+.+
T Consensus 78 ~~~Dl~v~~~~~~------------------------------il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~ 127 (181)
T PF00551_consen 78 LNPDLIVVAGYGR------------------------------ILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILN 127 (181)
T ss_dssp TT-SEEEESS-SS---------------------------------HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHH
T ss_pred hccceeehhhhHH------------------------------HhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcC
Confidence 899999999999 9999999999999999999999999999999999999
Q ss_pred CCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018502 283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAI 336 (355)
Q Consensus 283 G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i 336 (355)
|++.+|+|+|++++++|+||||.|+.++|.++||.++|.+|+.+++.+++.+++
T Consensus 128 g~~~~G~Tvh~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 128 GEKETGVTVHFMDEGLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp TSSEEEEEEEEE-SSTTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeEEEEecccCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999986
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-37 Score=300.59 Aligned_cols=184 Identities=24% Similarity=0.333 Sum_probs=164.8
Q ss_pred CceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-------CchHHHHHHHCCCCeEEeCCCCChhHHHH
Q 018502 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (355)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~ 198 (355)
++||+||++... .||++|++. +++|++|+|.+|++. .+++.++|.++|||++. |.+ .+.+++
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~--l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEK--LNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-ccc--CCcHHH
Confidence 479999998875 478888873 389999999998764 37899999999999764 433 333466
Q ss_pred HHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHH
Q 018502 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPA 276 (355)
Q Consensus 199 ~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~ 276 (355)
.+.++ ++|++|++.|++ |||+++|+.+++||||+||||||+|||++|+
T Consensus 72 ~~~l~~l~~D~ivvvayG~------------------------------ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPI 121 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQ------------------------------ILPKEILDLPPYGCINLHPSLLPRYRGAAPI 121 (307)
T ss_pred HHHHhccCCCEEEEEehhh------------------------------hCCHHHHhcCcCCeEEecCccCccccCccHH
Confidence 66665 899999999999 9999999999999999999999999999999
Q ss_pred HHHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502 277 KQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 350 (355)
Q Consensus 277 ~~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~ 350 (355)
+|||++|++++|+|+|+|++++|+|||+.|+.++|.++||..+|..|+.+.+.++|.+++..+..|.+.+..++
T Consensus 122 q~aI~~Gd~~TGvTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~~~~~Q~ 195 (307)
T COG0223 122 QWAILNGDTETGVTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTLTPIPQD 195 (307)
T ss_pred HHHHHcCCcccceEEEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765543
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=4.7e-36 Score=292.32 Aligned_cols=182 Identities=24% Similarity=0.321 Sum_probs=160.5
Q ss_pred CceEEEEEeCC-c-hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC----CchHHHHHHHCCCCeEEeCCCCChhHHHHHHH
Q 018502 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (355)
Q Consensus 128 ~~riavl~S~~-g-~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (355)
++||++|+|+. + .||+.|++. ..+|++|+|+++++. ..++.++|+++|||++... +.+++++.+.
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~---~~~~~~~~~~ 72 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPA---DPNDPELRAA 72 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccc---cCCCHHHHHH
Confidence 47999999887 3 588888763 378999999986542 3589999999999997522 2234456666
Q ss_pred hc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHH
Q 018502 202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQA 279 (355)
Q Consensus 202 l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A 279 (355)
++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++||
T Consensus 73 l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~a 122 (312)
T PRK06988 73 VAAAAPDFIFSFYYRH------------------------------MIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWA 122 (312)
T ss_pred HHhcCCCEEEEehhcc------------------------------ccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHH
Confidence 66 899999999999 9999999999999999999999999999999999
Q ss_pred HHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 018502 280 FDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 348 (355)
Q Consensus 280 ~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~ 348 (355)
+.+|++++|+|+|+|++++|+|||+.|+.++|.++||..+|++|+.+++.+++.+++..+.+|++.+.+
T Consensus 123 i~~g~~~tGvTih~~~~~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~ 191 (312)
T PRK06988 123 VLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEAPHLP 191 (312)
T ss_pred HHcCCCceEEEEEEECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999888765444
No 16
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=9.1e-36 Score=289.49 Aligned_cols=183 Identities=25% Similarity=0.355 Sum_probs=160.7
Q ss_pred ceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-------CchHHHHHHHCCCCeEEeCCCCChhHHHHH
Q 018502 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (355)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~ 199 (355)
+||++|+|..- .||+.|++. .++|++|+|.++++. .+++.++|+++|||++... + .+++++.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~-~--~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPE-K--LRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcC-C--CCCHHHH
Confidence 59999998764 578888763 378999999876431 3579999999999997533 2 2244566
Q ss_pred HHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHH
Q 018502 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (355)
Q Consensus 200 ~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~ 277 (355)
+.++ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpslLP~yRG~~pi~ 121 (309)
T PRK00005 72 AELAALNADVIVVVAYGQ------------------------------ILPKAVLDIPRLGCINLHASLLPRWRGAAPIQ 121 (309)
T ss_pred HHHHhcCcCEEEEehhhc------------------------------ccCHHHHhcCCCCEEEEeCcccccCCCccHHH
Confidence 6665 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 350 (355)
Q Consensus 278 ~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~ 350 (355)
||+.+|++.+|+|+|+|++++|+|||+.|+.++|.++||..+|++|+.+++.+++.+++..+.+|.+.+.+++
T Consensus 122 wai~~g~~~~GvTih~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~~~Q~ 194 (309)
T PRK00005 122 RAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTLTPIPQD 194 (309)
T ss_pred HHHHcCCCeEEEEEEEECCcccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987765543
No 17
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=1.2e-35 Score=289.48 Aligned_cols=182 Identities=26% Similarity=0.383 Sum_probs=159.1
Q ss_pred ceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-------CchHHHHHHHCCCCeEEeCCCCChhHHHHH
Q 018502 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------NSHVIRFLERHGIPYHYLCAKENEREEELL 199 (355)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-------~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~ 199 (355)
+||++|+|..- .||+.|++. +++|++|+|++++.. ..++.++|+++|||++.... .+.++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~---~~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEK---QRQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCC---CCcHHHH
Confidence 59999998764 477777653 379999999886532 35799999999999986432 1223455
Q ss_pred HHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHH
Q 018502 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAK 277 (355)
Q Consensus 200 ~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~ 277 (355)
+.++ ++|++|+++|++ |||+++++.+++++||+|||+||+|||++|++
T Consensus 72 ~~l~~~~~Dliv~~~~~~------------------------------iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~ 121 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGK------------------------------ILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQ 121 (313)
T ss_pred HHHHhhCCCEEEEccchh------------------------------hCCHHHHhhccCCEEEecCccccCCCCccHHH
Confidence 5555 899999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecC
Q 018502 278 QAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEM 349 (355)
Q Consensus 278 ~A~~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~ 349 (355)
||+.+|++++|+|+|+|++++|+|||+.|+.++|.+++|..+|++|+.+++.+++.+++..+.+|...+.++
T Consensus 122 wai~~G~~~tGvTih~~~~~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~~~~~Q 193 (313)
T TIGR00460 122 RAILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKNKPEPQ 193 (313)
T ss_pred HHHHCCCCeEEEEEEEEccccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999988765443
No 18
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=4.7e-33 Score=293.88 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=160.7
Q ss_pred ceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC----CchHHHHHHHCCCCeEEeCCCCChhHHHHHHHh
Q 018502 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP----NSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (355)
Q Consensus 129 ~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~----~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (355)
+||+||+|..- .+|+.|++. .++|++|+|.++++. .+++.++|+++|||++.... .+++++++.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~---~~~~~~~~~l 71 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPED---VNHPLWVERI 71 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCC---CCcHHHHHHH
Confidence 58999987764 477777752 378999999887532 34799999999999986432 2334556666
Q ss_pred c--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHH
Q 018502 203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAF 280 (355)
Q Consensus 203 ~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~ 280 (355)
+ ++|++|+++|++ |||+++++.++.++||+|||+||+|||++|++||+
T Consensus 72 ~~~~~D~iv~~~~~~------------------------------ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai 121 (660)
T PRK08125 72 RELAPDVIFSFYYRN------------------------------LLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVL 121 (660)
T ss_pred HhcCCCEEEEccccc------------------------------cCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHH
Confidence 5 899999999999 99999999999999999999999999999999999
Q ss_pred HhCCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCC
Q 018502 281 DAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYEMN 350 (355)
Q Consensus 281 ~~G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~~~ 350 (355)
.+|++.+|+|+|+|++++|+||||.|+.++|.++||..+|++|+.+++.+++.+++..+.+|.+.+.+|+
T Consensus 122 ~~g~~~~GvTi~~~~~~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~~~~~Q~ 191 (660)
T PRK08125 122 VNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNIPEIPQD 191 (660)
T ss_pred HcCCCcEEEEEEEECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988765554
No 19
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=257.95 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=147.7
Q ss_pred CceEEEEEeCC-c-hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHH-HCCCCeEEeCCCCChhHHHHHHHhcC
Q 018502 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (355)
Q Consensus 128 ~~riavl~S~~-g-~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~-~~gIP~~~~~~~~~~~~~~~~~~l~~ 204 (355)
++||.|++++. + .|+++|+.+. ++++.++.||.++++. +++ -+++|.+.++ -.+.+.+++.+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARK--NDMDVDYFCSFKSQTS--------FAKEIYQSPIKQLD-----VAERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhc--cCcceEEEEeccCCcc--------cccccccccccCcc-----hhhhHHhhhcC
Confidence 47999999876 3 6999999874 4668999999998752 332 3455544332 11346666778
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHhCC
Q 018502 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGV 284 (355)
Q Consensus 205 ~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~G~ 284 (355)
+|++|+++|+| |||+++++.+ +|||+|||+||+|||++|++||+.+|+
T Consensus 66 ~DliVvvayg~------------------------------ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe 113 (245)
T PRK07579 66 YDLVLSFHCKQ------------------------------RFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL 113 (245)
T ss_pred CCEEEEchhhc------------------------------cCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC
Confidence 99999999999 9999999976 599999999999999999999999998
Q ss_pred cEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec
Q 018502 285 KLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVLPYE 348 (355)
Q Consensus 285 ~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~~~~ 348 (355)
+ +|+|+|+|++++|+||||.|+.++|.++||.++|++|+.+++.+++.+++..+.+|++.+.+
T Consensus 114 ~-tGvTih~mde~lDtGdIi~Q~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~~~~~ 176 (245)
T PRK07579 114 K-IGATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLEHFDAIRDGSYTAKK 176 (245)
T ss_pred e-EEEEEEEEcCCCCCCCeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 5 99999999999999999999999999999999999999999999999999999999865443
No 20
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.1e-20 Score=177.17 Aligned_cols=138 Identities=21% Similarity=0.340 Sum_probs=118.5
Q ss_pred chHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc-CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCCh
Q 018502 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG 249 (355)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~ 249 (355)
+++...|...|.++..+-... +.-. ++.. +.|+.|.|.|++ ++|.
T Consensus 51 sP~a~~a~~k~la~~kl~p~~-k~~~---d~~~~~~~l~ItaSfGr------------------------------llp~ 96 (338)
T KOG3082|consen 51 SPAAMEANAKGLAYIKLQPGW-KNFH---DLMRPDDQLAITASFGR------------------------------LLPF 96 (338)
T ss_pred CccccccccccceeeeccChh-hccc---cccCCCcceEEEeehhc------------------------------cCcH
Confidence 456667777777776543110 0001 2233 689999999999 9999
Q ss_pred HHHhhcCCCeEEecCCCCCCCCCchHHHHHHHhCCcEeEEEEEEecC-cCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHH
Q 018502 250 KFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKLIGATSHFVTE-ELDAGPIIEQMVERVSHRDNLRTFVQKSEDVE 328 (355)
Q Consensus 250 ~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~G~~~~G~T~H~v~~-~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~ 328 (355)
+++..+++++||+|||+||+|||+.|+++|+.+|+..+|||+..++. .+|.|||++|+.++|++..|..+|..-+...+
T Consensus 97 kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~~Ls~~g 176 (338)
T KOG3082|consen 97 KLLNQLPYGGINVHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTIDPKRFDKGPILAQEYLAVNPKETAPELTASLSSLG 176 (338)
T ss_pred HHHhhCCcceeecChhhcccccCcchHHHHHhcCCcccceEEEEecccccccccceecceeccCccccchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 018502 329 KQCLAKAIKSYCEL 342 (355)
Q Consensus 329 ~~~l~~~i~~~~~~ 342 (355)
+.+|.+.+..+-++
T Consensus 177 a~lLir~l~~l~dq 190 (338)
T KOG3082|consen 177 ANLLIRSLYNLNDQ 190 (338)
T ss_pred chhhHHhhccchhh
Confidence 99999999887653
No 21
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.78 E-value=3.3e-19 Score=179.50 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=149.4
Q ss_pred ceEEEEE-eCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-CchHHHHHHHCCCCeEEeCC--CCChhHHHHHHHhc-
Q 018502 129 YKVAVLA-SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCA--KENEREEELLELVQ- 203 (355)
Q Consensus 129 ~riavl~-S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~~--~~~~~~~~~~~~l~- 203 (355)
+||||++ |-.| +++...++.+ .+||++|+|-+++.. ..++.--|++-|+|++.... +.+..-++++++.+
T Consensus 1 mkiaiigqs~fg---~~vy~~lrk~--gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y~~ 75 (881)
T KOG2452|consen 1 MKIAVIGQSLFG---QEVYCHLRKE--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKYQA 75 (881)
T ss_pred CeeEEechhhhh---HHHHHHHHhc--CceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHHHh
Confidence 5899887 3334 3444333322 489999999886543 45666678899999986542 22222356777666
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHh
Q 018502 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDA 282 (355)
Q Consensus 204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~ 282 (355)
.++|-|+--+.| ++|-++.+.+.++.|-.|||+||+.||++++.|.++.
T Consensus 76 ~gaelnvlpfcsq------------------------------fip~ei~~ap~~~siiyhps~lp~hrgasainwtli~ 125 (881)
T KOG2452|consen 76 LGAELNVLPFCSQ------------------------------FIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIH 125 (881)
T ss_pred hcccccccchhhh------------------------------ccchhhcccccCCceeeccccCccccCccccceEEEe
Confidence 789999988888 9999999999999999999999999999999999999
Q ss_pred CCcEeEEEEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhCC
Q 018502 283 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKS-EDVEKQCLAKAIKSYCELR 343 (355)
Q Consensus 283 G~~~~G~T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~-~~~~~~~l~~~i~~~~~~~ 343 (355)
|+++.|.++++.++++|+|||+.|+.+.+.++||..+|+.|. ...+.....++++++.+|.
T Consensus 126 gd~~~g~sifwaddgldtg~~llqk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gk 187 (881)
T KOG2452|consen 126 GDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGK 187 (881)
T ss_pred ccccCceEEEeecCCccccchhhhhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999995 5788899999999999985
No 22
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.77 E-value=1.3e-18 Score=136.92 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
++|||++|||||||||+||++|+++||||+|++|+.. +|.|+||++++.+. .+.++|+++|+++++++|+
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l 70 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEGSW--DAIAKLEAALPGLARRLDL 70 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCC
Confidence 4799999999999999999999999999999999975 99999999999884 4789999999999999998
No 23
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.73 E-value=4e-18 Score=138.18 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=71.3
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
+++++||+|+|||||||+||+.||++|+||+|++|+++ +|+|+|.|.+++++...+.++++++|++.++++|++
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcE
Confidence 78999999999999999999999999999999999988 999999999999988889999999999999999983
No 24
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=4.1e-16 Score=120.92 Aligned_cols=72 Identities=35% Similarity=0.644 Sum_probs=67.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
|||+.|+||||||++||++|+++||||++++|+.+...+.|+|++++++|..+.+.++|+++|+++++++++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 72 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDM 72 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999877789999999999996446799999999999999986
No 25
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=5.6e-16 Score=124.27 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=67.2
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
+++++++|+||||||++||++|+++||||++++|+.. +|.|+|++.++.|....+.++|+++|+++++++|+
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l 72 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999974 89999999999986346789999999999999998
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.61 E-value=1.5e-15 Score=119.12 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=63.2
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
++++||+.|+||||||++||+.|+++||||+|++|... +|.|.|.+.++.++. +.++|+++|+++++++|+.
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~~--~~~~l~~~L~~l~~~~~l~ 72 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPED--SLERLESALEELAEELGLD 72 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESHH--HHHHHHHHHHHHHHHTT-E
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCcc--cHHHHHHHHHHHHHHCCcE
Confidence 36899999999999999999999999999999999966 899999999999953 7899999999999999983
No 27
>PRK00194 hypothetical protein; Validated
Probab=99.60 E-value=2.3e-15 Score=120.70 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=68.4
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
+++++|+.|+||||||++||++|+++||||++++|+.. .|.|+|++.++.+..+.+.++|+++|+++++++|+.
T Consensus 2 ~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 2 MKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 68999999999999999999999999999999999974 899999999999864557899999999999999983
No 28
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=4e-15 Score=116.04 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=64.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
++||.|+||||||++||++|+++||||+|++|.+. .|.|.|.+.+++|. ..+.++|+++|+.+++++|+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGL 69 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCc
Confidence 58999999999999999999999999999999876 79999999999987 46799999999999999987
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.57 E-value=1.3e-14 Score=133.09 Aligned_cols=73 Identities=12% Similarity=0.006 Sum_probs=66.6
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
++++|||++|+||||||++||+.|+++||||+|++|+.. +|.|+|+|.++.+.. ..++|+++|..+++++|+.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~--~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWN--AITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChh--HHHHHHHHHHhhhhhcCeE
Confidence 367999999999999999999999999999999999965 999999999987753 7899999999999888874
No 30
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.56 E-value=2e-14 Score=112.38 Aligned_cols=71 Identities=17% Similarity=0.196 Sum_probs=65.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~----~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
++++.|+||||||++||++|+++||||.+++++.++ ..+.|+|++++++|+ ..+.++|+++|+++++++|+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~ 75 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNV 75 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999998775 348999999999996 57899999999999999997
No 31
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.11 E-value=2.4e-10 Score=105.05 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=65.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~----~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
.+.++|+|+||||||++||++|+++|+||.+.+....+ ....|.|++++++|. ..+.++|+++|+++|++++++
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ 172 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence 49999999999999999999999999999998876543 223799999999997 567999999999999999974
No 32
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=99.03 E-value=2.1e-10 Score=92.20 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=59.0
Q ss_pred EEEEEcCC-ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE---------EEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPEKKNVF---------YSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 44 ILTV~GpD-r~GIVA~VS~~La~~g~NIld~~q~id~~~g~F---------~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
|+|+.|.| +.|+||+||+.||++|+||.++++- +|+| .|.|+++++....+.++|+++|.++++++
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l----~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~el 76 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL----SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASEL 76 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh----hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhccc
Confidence 68999999 9999999999999999999999994 5555 45666665554568999999999999999
Q ss_pred hhc
Q 018502 114 NAM 116 (355)
Q Consensus 114 g~~ 116 (355)
|++
T Consensus 77 gvD 79 (84)
T cd04871 77 NVD 79 (84)
T ss_pred Cce
Confidence 983
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.74 E-value=3.1e-08 Score=89.47 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=64.6
Q ss_pred cc-EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 TH-GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~-~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
++ +|||++|+||||+|..+++.++++||||+|++.... ++.|+.+|.++.+-. ..+.|++.|..++++.|+.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~--g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAML--GEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHh--hcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeE
Confidence 44 899999999999999999999999999999998844 889999999988764 5799999999999998873
No 34
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.67 E-value=8.5e-08 Score=70.99 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=47.1
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la 110 (355)
+.++|.|+||||++++|++.|+++|+||..+.++.+... ...+.+....+. ...+++.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDE--EDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEG--HGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCC--CCHHHHHHHHHccc
Confidence 578999999999999999999999999999999976432 222222232222 24567777776653
No 35
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=1.9e-06 Score=67.16 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=42.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~ 92 (355)
+|.|.|+||||+++.|++.|+++||||.+.+.+.. +|++...+.+.-
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d 48 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRD 48 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEc
Confidence 78999999999999999999999999999998854 888888887753
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.12 E-value=5.2e-06 Score=75.21 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=63.1
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc----CCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP----EKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id----~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
..+.+.|.+.||||||..+|+++.+||+||.+.+...- .....|..-+...+|. +.+.+.++++|++++.++.+.
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v~ 169 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNVD 169 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcce
Confidence 45899999999999999999999999999999655331 2344588888888886 678999999999999999873
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.11 E-value=1.6e-05 Score=62.18 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=53.1
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 39 ~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
..-.+-|.+.|.||+|+++.|++.++++|+||.+++.......|.+.+.+.+++.+ .++|..-++++-+
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKLRQ 71 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHHCT
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHHHC
Confidence 34567899999999999999999999999999999998642378899999999874 5677666665543
No 38
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.99 E-value=8.6e-05 Score=67.71 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=58.1
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
|+.++++.+.|+||+++.||++++++|.||.+++.......|.- ++.+.+++.....+++.++|+++++-+.+.
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~ieqL~kQL~KLidVl~V~ 74 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRTIEQLTKQLYKLVNILKVQ 74 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHHHHHHHHHHHHHhHhhEEE
Confidence 47899999999999999999999999999999888653334544 444445543223789999999999887663
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.96 E-value=5.8e-05 Score=56.27 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=40.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~ 94 (355)
.|+|.|+|++|+++.+++.|+++|+||.++..+.. .+.....+.++.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEECCC
Confidence 57899999999999999999999999999998754 34555666666544
No 40
>PRK08577 hypothetical protein; Provisional
Probab=97.89 E-value=7.7e-05 Score=64.68 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=55.5
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 38 ~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
+....+-|++.+.|++|+++.|++.++++|+||.++++.....++.+.+.+.+++++.....+++.+.|+++
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l 123 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKL 123 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcC
Confidence 334578999999999999999999999999999998776543456677888898886323455666655544
No 41
>PRK04435 hypothetical protein; Provisional
Probab=97.81 E-value=9.9e-05 Score=65.29 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 018502 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (355)
Q Consensus 37 ~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~ 94 (355)
...+.++.|++.++|++|+.+.|.+.++++|+||+.++|.+. .+|...+.+.++..+
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~ 120 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSS 120 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCC
Confidence 356788999999999999999999999999999999999763 467777888887765
No 42
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=7.7e-05 Score=55.32 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=43.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC---CCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~---~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
+.|.++|+||.++.|++.++++|+||.++.+.... ..+...+.+.++..+ .+++.+-++.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~----~~~l~~l~~~l 64 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG----AEHIEEIIAAL 64 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC----HHHHHHHHHHH
Confidence 36788999999999999999999999998876432 135555566666542 34444444443
No 43
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.0002 Score=53.87 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~ 93 (355)
+++|.|+||+|+++.+++.++++|+||.+++.... .+.....+.+..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence 57899999999999999999999999999998744 4555555555543
No 44
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=8.6e-05 Score=56.69 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=42.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~ 94 (355)
-|.+.++|++|+.+.|++.|+++|+||..++|... ..|.+.+.+.++..+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCc
Confidence 46889999999999999999999999999998643 257788888887764
No 45
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=0.00018 Score=53.43 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=44.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
.|++.++|++|+++++++.|+++|+||.++.+.... .+.+.+.+.++-. ...+++.++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEecc---ccHHHHHHHHhC
Confidence 578999999999999999999999999998887432 4555555544422 134455555554
No 46
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.66 E-value=0.00084 Score=73.63 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=56.3
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CChHHHHHHHHHHHh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSK 111 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~-~~~~~L~~~l~~la~ 111 (355)
.....++|.|+||||++|.|++.|+.+|+||++.+.+. .+|.+...+.|.-+... ...+.++++|.+...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 45578999999999999999999999999999999996 58998888887754322 335677777776543
No 47
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00016 Score=54.64 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=42.9
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+.+++..+|+||.++++++.++++|+||.++.+...+.++.-.+++.++.++ +.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 5678999999999999999999999999998766432111222344444321 34555555554
No 48
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.65 E-value=0.00015 Score=54.75 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=44.2
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+++.++|++|++++|++.|+++|+||.++.-.....++...|++.++.+ ...++.+++.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC----CCHHHHHHHHc
Confidence 5779999999999999999999999988765432245666677766553 23456665654
No 49
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00045 Score=53.89 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=45.6
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+-++|.++||||+.+++++.|+.+|.||.+.+-+.. .+|+=.=...|. +....+.++|++++.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~-d~~~~~~~~~~~~~~~ 65 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVT-GWKRGETAALGHALQK 65 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEe-cCCccchHHHHHHHHH
Confidence 357899999999999999999999999999888754 244411122222 2223456778887764
No 50
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.0004 Score=52.89 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=50.4
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
|.+.++||+|.++.|++.+++.|+||.+++.... ..|...+.+.+++.+ .++|.+-++.+.+--|
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~~i~g 66 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVRALPE 66 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHhcCCC
Confidence 6789999999999999999999999999887543 257777777777764 5677776666554444
No 51
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00055 Score=51.42 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=48.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
+.|.+.+.|++|+++.+++.++++|+||..+.+......|...+.+.+... +.+++++.++.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~~ 65 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIEA 65 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHHc
Confidence 357899999999999999999999999999987533222555566666543 45777776666654
No 52
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0011 Score=52.16 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.2
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+++.|.|+||||+.+.+++.|+++|+||.+..-+.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 36899999999999999999999999999987764
No 53
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.50 E-value=0.00049 Score=50.78 Aligned_cols=62 Identities=21% Similarity=0.088 Sum_probs=45.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~ 107 (355)
.|.+.+.|++|+++.+++.++++|+||..+.+...+.++...+.+.++.++ ...+++.++|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHh
Confidence 367889999999999999999999999999886432356666777776531 23344444444
No 54
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.46 E-value=0.00042 Score=49.39 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~ 94 (355)
|.+.|+|++|+++.+++.++++++||.++.+... ..+...+.+.+..++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence 4688999999999999999999999999887643 135556777777664
No 55
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.43 E-value=0.001 Score=51.35 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
.+.|.|+||||+.+++++.|+++|+||.+..-+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T 36 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFT 36 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE
Confidence 5789999999999999999999999999988654
No 56
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.41 E-value=0.0009 Score=49.07 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=44.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
+.+.++|++|+++.+++.|+++|+||..+........|...+.+.+ +. . ..+++.++|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHHcC
Confidence 5788999999999999999999999999988643223555555555 33 2 345566655543
No 57
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.31 E-value=0.00087 Score=53.38 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=50.3
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|++.|++.-.++||+.++|++.++.+|.||..++.......|..-|.+.+..++ ...+++.+.|+++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~--~~i~qi~kQL~KL 67 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE--NEATLLVSQLKKL 67 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH--HHHHHHHHHHhCC
Confidence 468899999999999999999999999999998876544556666666654332 2455555555543
No 58
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0017 Score=47.90 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=42.5
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|++.++|++|+++++++.|+++|+||..+.+.....++.-.+. +.+++. ..+++.++|+++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~--~~~~~i~~l~~~ 62 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP--IDEEVIEEIKKI 62 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC--CCHHHHHHHHcC
Confidence 5788999999999999999999999999887631123343333 555542 445555555543
No 59
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.19 E-value=0.0028 Score=47.80 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=43.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
.+++..+|+||..+++++.++++|+||..+........+.=.+++.++.+ +.+.+.+.|++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 46788899999999999999999999999876543223333344444432 34567777665
No 60
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0035 Score=48.46 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
-++|..+||+|+.+++++.|+++|+||.....+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t 36 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST 36 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec
Confidence 4688999999999999999999999999988764
No 61
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.10 E-value=0.0018 Score=58.38 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=50.3
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|+.+|++.-+|+||..++|++.++++|+||..+........|..-|.+.++.++ ...+++...|+++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~--~~i~qi~kQl~KL 67 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE--QVIEQITKQLNKL 67 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH--HHHHHHHHHHhcc
Confidence 467899999999999999999999999999998876433345555666665432 2456666666654
No 62
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.00099 Score=52.90 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=34.5
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec--cCCCCeEEE
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV--PEKKNVFYS 86 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i--d~~~g~F~M 86 (355)
-|+.|.|+||||+.+.|+..|+++|.+|....-.. +.-.+.|+.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV 47 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYI 47 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEE
Confidence 37899999999999999999999999999855433 222334654
No 63
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.07 E-value=0.0016 Score=47.34 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEE
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~ 91 (355)
+++..+|+||.++++++.|+++|+||..+.-.... ++.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 35788999999999999999999999998766432 45666666664
No 64
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.04 E-value=0.001 Score=49.78 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=42.9
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+++.+.|++|..+.+++.++++|+||..++.... .|...|++.++.+ ..+++.+++.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~--~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR--GEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC--CCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 5778999999999999999999999988765422 4666677666554 33455555543
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.03 E-value=0.0036 Score=48.35 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=46.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
|.+.|.||+|+.+.|++.+++.|+||..++...+ |. +.+.+++.+ .++|..-++++-+--|+
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~----~~~L~~li~~L~~i~gV 64 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIE----FEKLQTLMPEIRRIDGV 64 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecC----HHHHHHHHHHHhCCCCc
Confidence 6788999999999999999999999999998632 33 666676653 45665555555443333
No 66
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.02 E-value=0.0036 Score=42.07 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=31.0
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
+++.|+|++|+.+++++.++++|+||..+.+...
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4788999999999999999999999999988653
No 67
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.01 E-value=0.0033 Score=50.07 Aligned_cols=66 Identities=8% Similarity=0.096 Sum_probs=51.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|++.|++.-.++||+.+.|++.+..+|.||..++.......+.--|.+.++ + ....+++.+.|+++
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL 67 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKL 67 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcC
Confidence 789999999999999999999999999999999887543345444555553 2 34567777777654
No 68
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.01 E-value=0.0014 Score=72.50 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=47.3
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC--CCCeEEEEEEEE
Q 018502 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYSRSEFI 91 (355)
Q Consensus 32 ~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~--~~g~F~Mr~~v~ 91 (355)
|++...+.....++.|.|+||||+++.|+++|+++|+||....-.+.. ....|++.....
T Consensus 769 V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g 830 (850)
T TIGR01693 769 VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830 (850)
T ss_pred EEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC
Confidence 677777777889999999999999999999999999999997665532 223466554443
No 69
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0038 Score=47.75 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.2
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+++.=+|+||..+++++.++++|+||+.+.+.-
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 456669999999999999999999999987763
No 70
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0031 Score=49.67 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=31.4
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
.||.|.++||||+.+.|++.|+++|++|....-..
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT 36 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS 36 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee
Confidence 47899999999999999999999999999865543
No 71
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0034 Score=46.13 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=41.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
++++.=+||||..+++++.|+++|+||..+.++.....|. .++.+.++. .+.+.+.|++
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~--~~v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK--ALLIFRTED----IEKAIEVLQE 59 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe--EEEEEEeCC----HHHHHHHHHH
Confidence 3567779999999999999999999999988764322233 234455442 4555555554
No 72
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.90 E-value=0.0036 Score=50.89 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=50.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|+.+|++.-.++||+.++||..++.+|.||..++-......|.--|.+.++..+ ....+++.+.|+++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~Kl 68 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQ 68 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCC
Confidence 467899999999999999999999999999998876555566666666665322 22345555555544
No 73
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.84 E-value=0.0042 Score=55.81 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=49.7
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
+.+|++.-+|+||..++|++.++++|+||..+...-....|..-|.+.++.++ ...+++.+.|+++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~--~~i~qi~kQl~Kl 66 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD--KVLEQITKQLNKL 66 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH--HHHHHHHHHHhcC
Confidence 36889999999999999999999999999998776443356666666666532 2456666666654
No 74
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.79 E-value=0.004 Score=57.96 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=53.2
Q ss_pred cccCCCCccccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 018502 23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~ 93 (355)
+-..+.+-++++++ ....|-+...||||+|++|++.|.++|+||-.++..-...+|.=.|.+.+|-+
T Consensus 133 riv~idg~~vd~~~----~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 133 EITEINGFAIEFRG----EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN 199 (208)
T ss_pred EEEEECCEEEEecC----CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence 44566777888888 66677888899999999999999999999999888765556665566666543
No 75
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.72 E-value=0.014 Score=45.60 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=44.5
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~-~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
+++.-+|++|..+.+.+.++++|+||+.+...-.. ..+.+..++.++.. .+.+.+.+.++.+.+
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 45566899999999999999999999998665321 13334455555532 345677777776654
No 76
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.68 E-value=0.0083 Score=49.91 Aligned_cols=66 Identities=15% Similarity=0.028 Sum_probs=46.8
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
.+.+|++.-.|+||+.++||..++.+|.||..++---....|.=-|.+.+. + ....+++.+.|+++
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCC
Confidence 458999999999999999999999999999998765433334333444443 2 22456666655554
No 77
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.012 Score=44.34 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=40.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
.+++.-+|+||..++|++.|+++|+||..+-.+.. .+.=.+|+ ..+ +.+...+.|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~--~~~~~~rl--~~~----~~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADT--SEFGILRL--IVS----DPDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec--CCCCEEEE--EEC----CHHHHHHHHHH
Confidence 46777899999999999999999999999876533 23323344 332 24556666654
No 78
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.013 Score=45.29 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=50.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCC---CCChHHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPI---KWPREQMDEDFFKL 109 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~---~~~~~~L~~~l~~l 109 (355)
++||.|||+.|+=..+++.+.+.|.+|+.-+... +|+..-++.+-++.. ...-+-|+..|.+.
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT---DGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDST---DGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEeccccc---CCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 7899999999999999999999999999988765 477776776666643 45567777776643
No 79
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.51 E-value=0.015 Score=44.78 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=39.3
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 46 TV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~-~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
.+.-+|+||..+.|-+.++++|+||+.+...-... .+.|...+.++.. .+...+++.++.+.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~---~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGH---IDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 45558999999999999999999999995542211 2333333333322 123455555555433
No 80
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.028 Score=44.61 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=30.1
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
++-|.|+||||+.+.|++.++++|++|....-.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 688999999999999999999999999986554
No 81
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=96.22 E-value=0.02 Score=43.60 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=29.7
Q ss_pred cEEEEEEcC----CccchHHHHHHHHHhcCCeEeEee
Q 018502 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAAD 74 (355)
Q Consensus 42 ~~ILTV~Gp----Dr~GIVA~VS~~La~~g~NIld~~ 74 (355)
-..|++.|+ |.+|+++++++.|+++|+||..++
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 367899999 899999999999999999999998
No 82
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.14 E-value=0.021 Score=50.28 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=60.0
Q ss_pred ccccCCCCccccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHH
Q 018502 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~ 101 (355)
+|..-|||-- | -....+-|.+.=.||.|+.++|=..+|+.+|||+-++|++ +.+|+=...+.++......+.+.
T Consensus 57 YkD~vfpf~~----m-~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ 130 (150)
T COG4492 57 YKDFVFPFYD----M-LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDK 130 (150)
T ss_pred hccceeehhh----c-ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHH
Confidence 3445566543 3 2224477788889999999999999999999999999997 68999888888887765444555
Q ss_pred HHHHHH
Q 018502 102 MDEDFF 107 (355)
Q Consensus 102 L~~~l~ 107 (355)
+-+++.
T Consensus 131 ii~kl~ 136 (150)
T COG4492 131 IIEKLR 136 (150)
T ss_pred HHHHHh
Confidence 555444
No 83
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.84 E-value=0.16 Score=57.02 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=51.6
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEE-EEEEeCCC-C-C---ChHHHHHHHH
Q 018502 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSR-SEFIFDPI-K-W---PREQMDEDFF 107 (355)
Q Consensus 34 ~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr-~~v~~~~~-~-~---~~~~L~~~l~ 107 (355)
++..+......|+|.|+||+|+.+.|++.|+.+|+||++++.+.. .+-|.+- +.|..+.. . . ..+.+++.|.
T Consensus 724 ~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~--~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~ 801 (931)
T PRK05092 724 VRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT--TDGRALDTFWIQDAFGRDEDEPRRLARLAKAIE 801 (931)
T ss_pred EEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe--cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 344455567899999999999999999999999999999998754 3444433 33432221 1 1 2455677776
Q ss_pred HHH
Q 018502 108 KLS 110 (355)
Q Consensus 108 ~la 110 (355)
...
T Consensus 802 ~~l 804 (931)
T PRK05092 802 DAL 804 (931)
T ss_pred HHH
Confidence 553
No 84
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.82 E-value=0.032 Score=42.46 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=43.5
Q ss_pred CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 51 Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|+||++..|++.+...|.||..++.......|..-|.+.++.++ ...+.|...|+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhcc
Confidence 68999999999999999999999888655677777777777643 3567777777654
No 85
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.62 E-value=0.057 Score=59.51 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=42.6
Q ss_pred cccCCCCccc-cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 23 KSLKFPGEPI-ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
+.-.|+..|. ++.-.+.....+|+|.|+||||++++||+.|+++|+||.+..-+..
T Consensus 687 ~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 687 PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 3334444332 3444444566899999999999999999999999999999887754
No 86
>PRK07334 threonine dehydratase; Provisional
Probab=95.58 E-value=0.075 Score=53.95 Aligned_cols=69 Identities=13% Similarity=0.010 Sum_probs=53.1
Q ss_pred CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 37 ~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id---~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
..++...-|.|.+.||+|+++.|++.|++.++||.+++...+ ...+...+.+.+++.+ .++|.+-++.+
T Consensus 321 ~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L 392 (403)
T PRK07334 321 VRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL 392 (403)
T ss_pred HhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence 344556788999999999999999999999999999987532 0357777888888764 56666655554
No 87
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.54 E-value=0.061 Score=59.09 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=57.2
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
.-.+-|.|.+.||+|+++.|++.+++.++||.+++...+..++.+.|.+.+++.+ .++|..-+..+-+--|+
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~~i~~V 735 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLNQVPDV 735 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHhcCCCc
Confidence 3456899999999999999999999999999999876443357888999998875 57777766666544444
No 88
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.37 E-value=0.067 Score=40.66 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=27.1
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 46 VFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 46 TV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
+|.=|||||-.+++.+.+++ |.||+++++.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~ 31 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR 31 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE
Confidence 56669999999999999999 9999999775
No 89
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.23 E-value=0.034 Score=58.56 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred cCCCCccccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHH
Q 018502 25 LKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDE 104 (355)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~ 104 (355)
.++.|-++++++ ....|-+...|+||+|++|++.|+++|+||-..+..-...+|.-.|.+++|-+ .+ +++-+
T Consensus 439 ~~ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~---v~-~~~l~ 510 (526)
T PRK13581 439 VEIDGYRVDAKP----EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP---VP-EEVLE 510 (526)
T ss_pred EEECCEEEEeeC----CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC---CC-HHHHH
Confidence 355666777777 56667777899999999999999999999999877644445666666666533 23 44555
Q ss_pred HHHHH
Q 018502 105 DFFKL 109 (355)
Q Consensus 105 ~l~~l 109 (355)
++.++
T Consensus 511 ~i~~~ 515 (526)
T PRK13581 511 ELRAL 515 (526)
T ss_pred HHhcC
Confidence 55543
No 90
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.20 E-value=0.045 Score=55.99 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 34 ~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
.+++.....+.|++.-.|+||++++|++.|+++|+||-.++-.. .++.=.|.+++ ++ . ..+++.+.++++
T Consensus 330 ~~~~~~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~A~~iie~--D~-~-~~~~~~~~i~~i 399 (409)
T PRK11790 330 VSLPEHPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEIGYVVIDV--DA-D-YAEEALDALKAI 399 (409)
T ss_pred cccCCCCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCEEEEEEEe--CC-C-CcHHHHHHHHcC
Confidence 34443446678888999999999999999999999998877753 24443444444 43 1 235666666653
No 91
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.13 E-value=0.062 Score=49.24 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=46.6
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCC-eEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN-VFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g-~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
-|++....+||...++|..++++|+||+..+|+... +| .=+.-|+++ + -.+++.|.+.++..
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~-~g~~~~iYmEiE--g-i~d~e~l~~~lks~ 66 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEK-DGEKALIYMEIE--G-IDDFEKLLERLKSF 66 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhc-cCceEEEEEEee--C-CCCHHHHHHHhhcc
Confidence 467888999999999999999999999999999854 44 333344443 3 22677887777654
No 92
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.01 E-value=0.019 Score=60.42 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred ccccCCCCccccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHH
Q 018502 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~ 101 (355)
.+=.+..|-++++++ ....|-+...|+||+|+.|++.|+++++||-.++..-...+|.-.|.+.+|-+ .+ ++
T Consensus 435 ~~I~~ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~---v~-~~ 506 (525)
T TIGR01327 435 PRIVEIDGFHVDLEP----EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP---VP-DE 506 (525)
T ss_pred EEEEEECCEEEEEec----CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC---CC-HH
Confidence 344456677788877 55666777799999999999999999999988776644445676667766543 23 44
Q ss_pred HHHHHHH
Q 018502 102 MDEDFFK 108 (355)
Q Consensus 102 L~~~l~~ 108 (355)
+.+++.+
T Consensus 507 ~l~~i~~ 513 (525)
T TIGR01327 507 VLEEIKA 513 (525)
T ss_pred HHHHHhc
Confidence 4444543
No 93
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.97 E-value=0.13 Score=38.09 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=42.9
Q ss_pred EEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 45 HVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 45 LTV~G-pDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+|+.| +|++|+.+++.+.|+++|+||.-+.|.... .+ -+.+.|.++.. +.+...+.+.+..++++
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~~--d~~~~~~~l~~~~~~~~ 69 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPKS--DLKKALAVLEKLKKELG 69 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecHH--HHHHHHHHHHHHHHHcC
Confidence 44443 689999999999999999999988886432 22 24455555532 34555555665554554
No 94
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.90 E-value=0.1 Score=58.62 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=39.7
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 32 ~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
|+++..+.....++.|.|+||||+++.|+++|+++|+||.+..-.+.
T Consensus 833 V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~ 879 (931)
T PRK05092 833 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879 (931)
T ss_pred EEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence 44555555566899999999999999999999999999999877653
No 95
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.74 E-value=0.14 Score=55.89 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=56.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
.-.+-|.|.+.||+|+++.|++.+++.++||.+++.... .++.+.|.+.+++.+ .++|..-+..+-.--|+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~~i~~V 678 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIKTKNDV 678 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCCc
Confidence 345789999999999999999999999999999987643 257778888888874 57777777766544443
No 96
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.53 E-value=0.16 Score=55.54 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=56.0
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
.-.+.|.+.+.||+|+++.|++.+++.++||.+++.... .++.+.|.+.+++.+ .++|..-+..+-+--|+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr~i~~V 694 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIRVMPDV 694 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHhCCCCc
Confidence 345689999999999999999999999999999996543 356778888888874 57777766666544444
No 97
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.50 E-value=0.071 Score=59.62 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec--cCCCCeEEE
Q 018502 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV--PEKKNVFYS 86 (355)
Q Consensus 32 ~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i--d~~~g~F~M 86 (355)
|++.-..+.+..+|-|.++||||+.+.|++.|+++|+||....-.+ ++..+.|+.
T Consensus 798 V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 798 VSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 5565556677889999999999999999999999999999855443 333344653
No 98
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.37 E-value=0.27 Score=54.89 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=43.1
Q ss_pred cccCCCCcc-ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 23 KSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
+.-.|+..| +.+.-.+.....+|.|.++||||+.+.|++.|+++|+||.+..-++.
T Consensus 766 ~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 766 QVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred cccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 333455444 33444555667899999999999999999999999999999776643
No 99
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.12 E-value=0.11 Score=46.23 Aligned_cols=118 Identities=15% Similarity=0.257 Sum_probs=68.0
Q ss_pred CceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCC--CCCchHH----HHHHHCCCCeEEeCCCCChhHHHHHHH
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPNSHVI----RFLERHGIPYHYLCAKENEREEELLEL 201 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~--~~~~~v~----~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (355)
..||++.+-+.+.....++..+. .++.++. +++...- +.+..+. +.++++|-.+.... .+.+.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~--~~g~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e~ 70 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLA--KFGMEVV-LIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEEA 70 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHH--HTTSEEE-EESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHH--HcCCEEE-EECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHHh
Confidence 46888887644545555555432 2456743 4444320 1112344 45566676665542 24456
Q ss_pred hcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 202 VQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 202 l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
++++|++..-+|.. +.+ .+..-+.--|.+|.+..++++..+..++=+|| ||.+||
T Consensus 71 l~~aDvvy~~~~~s-------------~~~-~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 71 LKGADVVYTDRWQS-------------MGD-KERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp HTT-SEEEEESSSC-------------TTS-GGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred cCCCCEEEEcCccc-------------ccc-hHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 66899999999873 000 11123333455679999999998889999999 599998
No 100
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.11 E-value=0.19 Score=50.36 Aligned_cols=73 Identities=15% Similarity=-0.011 Sum_probs=46.9
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee---ccCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF---VPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 35 ~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~---id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
.+..++..+.+++.=|||||..+++++.++++|+||+++... .....+.-...+.++..+ ....+++.++|++
T Consensus 298 gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 298 GLVKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred HHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 334455656778888999999999999999999999998654 111123333444444432 1233455555554
No 101
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.11 E-value=0.099 Score=58.27 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=39.1
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 32 ~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
|++.-..+....+|.|.++||||+.+.|++.|+++|+||....-++
T Consensus 773 V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T 818 (854)
T PRK01759 773 VRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT 818 (854)
T ss_pred EEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 5555556667799999999999999999999999999999865543
No 102
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.96 E-value=0.33 Score=54.34 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=45.2
Q ss_pred cccccCCCCcc-ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 21 SFKSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
+.+.-.|+..| |++.-.+.....+|.|.++||||+.+.|++.|+++|+||.+..-++.
T Consensus 774 ~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 774 PRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred cccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 34444555555 44444555677899999999999999999999999999999877654
No 103
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=93.95 E-value=1.6 Score=38.11 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=75.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceee
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~ 121 (355)
--|++.-..|||-.+++++.|.++|+||-..+-. .+|.|- .||.|+-| ++-.+.|++ -|. +.|
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiA---dt~dFGIiRmvV~~~------d~A~~~Lee----~gF---~Vr 67 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIA---DTGDFGIIRMVVDRP------DEAHSVLEE----AGF---TVR 67 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEec---cccCcceEEEEcCCh------HHHHHHHHH----CCc---EEE
Confidence 3578888999999999999999999999987663 367775 67777533 333445553 233 444
Q ss_pred eCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC--------CchHHHHHHHCCCCeE
Q 018502 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYH 185 (355)
Q Consensus 122 ~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~--------~~~v~~~a~~~gIP~~ 185 (355)
+++ =+||=+-.....|..++..+.+..++.+-..-++...... -....+..+++|||+.
T Consensus 68 ~~d-----VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~~ 134 (142)
T COG4747 68 ETD-----VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKLI 134 (142)
T ss_pred eee-----EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCeec
Confidence 433 3555554445556666666555555544433333332110 1235666778888875
No 104
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.89 E-value=0.67 Score=37.87 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=48.1
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~-~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
+.-|.+..+|+||-.+.+=+.++++|+|++.+...-... .+.|.--+.++.. ..+.++++++.+.+.+|+
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~----~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK----SAPALDPIIKSLRNDIGA 84 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----CCHHHHHHHHHHHHHhCC
Confidence 334455559999999999999999999999987763211 1222222333322 237888999998888876
No 105
>PRK08198 threonine dehydratase; Provisional
Probab=93.68 E-value=0.13 Score=52.14 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=36.1
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 35 ~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
++......+.+.|.=+||||..+++.+.++++|+||+++++.
T Consensus 320 gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 320 GLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred hhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 444455667788888999999999999999999999999986
No 106
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.62 E-value=0.62 Score=33.10 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.7
Q ss_pred EEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 44 ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+++++|. +++|+++++.+.|+++++|+.-+.|..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5788887 889999999999999999999999864
No 107
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.18 E-value=0.43 Score=53.34 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 018502 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (355)
Q Consensus 34 ~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v 90 (355)
++-.+......|+|.++||||+.+.|++.|+.+|+||.+..-++. .+|+-.=.+.|
T Consensus 669 i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V 724 (854)
T PRK01759 669 ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIV 724 (854)
T ss_pred EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEE
Confidence 333444456799999999999999999999999999999886542 25554433444
No 108
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.79 E-value=0.53 Score=52.82 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=39.3
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeE
Q 018502 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF 84 (355)
Q Consensus 35 ~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F 84 (355)
+-.+......|+|.|+||||+.+.|++.|+.+|.||.+..-+.. .+|+.
T Consensus 694 ~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~a 742 (884)
T PRK05007 694 SKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMA 742 (884)
T ss_pred EecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeE
Confidence 33444456799999999999999999999999999999875543 24554
No 109
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.71 E-value=1.3 Score=49.39 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=73.5
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhcc
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~ 117 (355)
+-.+++++|. +++|+.+++-+.|++.|+||.-++|... +-... +-++ .++..++++.+-++|-.
T Consensus 395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS--e~~Is----~vV~-----~~d~~~al~~LH~~f~~-- 461 (819)
T PRK09436 395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS--ERSIS----VVID-----NDDATKALRACHQSFFL-- 461 (819)
T ss_pred CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc--cceEE----EEEc-----HHHHHHHHHHHHHHHhc--
Confidence 6689999997 7899999999999999999999998632 22222 2222 35567788888777743
Q ss_pred ceeeeCCCCCCceEEEEEeCC-chhHHHHHhhhh----cCCCCeEEEEEE
Q 018502 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI 162 (355)
Q Consensus 118 ~~~~~~~~~~~~riavl~S~~-g~~L~~ll~~~~----~~~l~~eI~~Vi 162 (355)
..++.+|++++-|. |.++..+|...+ ...++.+|++|.
T Consensus 462 -------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 462 -------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred -------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 23678999998877 788888775422 113567788864
No 110
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=92.69 E-value=1.2 Score=32.53 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=30.1
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+++++| ++.+|+.+++.+.|+++|+|+.-++|.
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~ 38 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG 38 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 4678888 488999999999999999999988885
No 111
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.59 E-value=1 Score=34.85 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=40.5
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 46 TV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
.+.-+|+||-.+.|=+.++++|+|++.+...-.+ ++.+-...-+|++. ..+.++++++.+.+
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~-~~~~~y~Ffvd~~~---~~~~~~~~l~~L~~ 65 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSR-RNGSEYEFFVDCEV---DRGDLDQLISSLRR 65 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCC-CCCceEEEEEEEEc---ChHHHHHHHHHHHH
Confidence 3444899999999999999999999998876322 12222222233332 23457777777654
No 112
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.28 E-value=0.52 Score=52.96 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 34 ~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
+.-.+.....+|.|.++||||+.+.|++.|+++|+||.+..-++.
T Consensus 806 i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~ 850 (895)
T PRK00275 806 ISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL 850 (895)
T ss_pred EEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence 333344456799999999999999999999999999999877654
No 113
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=92.21 E-value=1.2 Score=40.55 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=55.1
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
.|+-++++.=.|.||..+.|++.++..|.||..+.--.....+ .-||.+-.....-..+++.+.+..+-.-+++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 3778888889999999999999999999999997765433344 3355555444334578888888887665554
No 114
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=92.12 E-value=1.2 Score=33.27 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=40.9
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
.+++++|. +.+|+.+++.+.|+++|+|+..+++. +- .+.+-++ .++..+++..+-++|+
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~S----e~----~is~~v~-----~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADS----HT----TISCLVS-----EDDVKEAVNALHEAFE 63 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcC----cc----EEEEEEc-----HHHHHHHHHHHHHHhc
Confidence 46889996 88999999999999999999765542 11 2222222 3556666776666653
No 115
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.03 E-value=0.58 Score=52.48 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCccccCCC--CCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 018502 28 PGEPIESSV--SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (355)
Q Consensus 28 ~~~~~~~~~--~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~ 83 (355)
...|+..+. .+.....-++|.|+||+|+-|.+++.|+.+|+||++.+-+.. .+|+
T Consensus 674 ~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~ 730 (869)
T PRK04374 674 IGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDA 730 (869)
T ss_pred CCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCE
Confidence 445554432 344455788999999999999999999999999999888763 2555
No 116
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.98 E-value=0.59 Score=52.51 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=38.4
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEE
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v 90 (355)
.-..++|.|+||||+-+.+++.|+.+|+||++.+-+.. .+|+..=...|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V 751 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIV 751 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEE
Confidence 45688999999999999999999999999999886543 24553333334
No 117
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=91.94 E-value=0.87 Score=50.71 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=36.4
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~ 83 (355)
.....|+|.++||||+.+.|++.|+.+|+||.+.+-+.. .+|+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g~ 708 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDGV 708 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCCE
Confidence 455789999999999999999999999999999877743 2553
No 118
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.92 E-value=0.78 Score=50.23 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=58.1
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 39 ~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
..-.+-|.|.+.||+|+.+.|++.|++.++||+.++...+ ..+.+.|.+.+.+.+ ..+|..-++.+-+--++
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~~~~~V 695 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLKQLPDV 695 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHhcCCCe
Confidence 3456789999999999999999999999999999998865 466777999998875 56777766666544444
No 119
>PLN02342 ornithine carbamoyltransferase
Probab=91.91 E-value=1.1 Score=45.37 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=40.5
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
+.+.++++|++.+-.|.... |+|.+- -....+-+|.+..++++..+..++=+|| ||++||.
T Consensus 253 ~~eav~~aDVvy~~~W~s~~--~~e~~~-----------~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 253 PAEAVKGADVVYTDVWASMG--QKEEAE-----------KRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred HHHHhCCCCEEEECCccccc--cchhhH-----------HHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 34555589999888775311 222211 1112345688999999998888999999 6988763
No 120
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.90 E-value=0.72 Score=46.86 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=39.1
Q ss_pred EEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHH
Q 018502 45 HVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106 (355)
Q Consensus 45 LTV~Gp-Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l 106 (355)
|.+.=+ |+||.++.|.+.|+++|+||.++.-.-.+ .+.|..++.|...+ +.+.|..+-
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~~~---~~~~~~~~~ 356 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEPGS---DRAALARAA 356 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEeccc---cHHHHHHHH
Confidence 333336 99999999999999999999998774333 34444566665433 445444433
No 121
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=91.75 E-value=0.37 Score=43.70 Aligned_cols=57 Identities=25% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCCcccEEEEEEc--CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEe
Q 018502 36 VSPTLTHGIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (355)
Q Consensus 36 ~~~~~~~~ILTV~G--pDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~ 92 (355)
.+|.+---||++.- .+.|||+|+|++.+|++||+|.++-...+..++.=+.++.++-
T Consensus 87 vA~~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~ 145 (167)
T COG2150 87 VAPLLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER 145 (167)
T ss_pred HHHhcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec
Confidence 34455555666665 6679999999999999999999987765546666566666653
No 122
>PRK06382 threonine dehydratase; Provisional
Probab=91.37 E-value=0.72 Score=46.95 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=46.3
Q ss_pred CCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 36 ~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i---d~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+........++|.=+|+||..+++++.++++|+||+++.+.. ....+.-...+.++..+ ....+++.+.|++
T Consensus 324 ~~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~ 398 (406)
T PRK06382 324 LENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE 398 (406)
T ss_pred HHhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 334455667888889999999999999999999999887641 11233323344444431 1123356666654
No 123
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=1.9 Score=31.39 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=42.1
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
.+++++|. +++|+.+++-+.|+++|+|+.-++|... . +.+.|-++. ++..++.+.+-++|
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s--~----~~isf~i~~-----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS--E----YNISFVVAE-----DDGWAAVKAVHDEF 64 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--c----ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence 46788885 7889999999999999999999988632 2 344454443 44455555554444
No 124
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.03 E-value=1.9 Score=31.60 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
.+++++|. +++|+.+++.+.|+++|+|+.-++|... + ..+.|-+++ +...++++.+-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s--~----~~isf~v~~-----~~~~~a~~~lh~~ 63 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS--E----INISCVIDE-----KDAVKALNIIHTN 63 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc--c----ceEEEEEeH-----HHHHHHHHHHHHH
Confidence 46788887 6899999999999999999999888532 2 344444443 3345555554443
No 125
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.61 E-value=1.4 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=28.3
Q ss_pred EEEE--E-cCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 44 ILTV--~-GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+|+ . .++++|..++|-+.|+++|+||.-+.|.
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s 38 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTS 38 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeec
Confidence 4565 2 4788999999999999999999999883
No 126
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.36 E-value=2.7 Score=32.95 Aligned_cols=61 Identities=16% Similarity=0.072 Sum_probs=40.3
Q ss_pred EcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 48 HCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 48 ~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
.-+|+||-.+.+=+.++++|+|+..+...-... ..+-...-++++. ..+.++++++++.+.
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~-~~~~y~F~id~e~---~~~~i~~~l~~l~~~ 66 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKR-RSSEFEIFVDCEC---DQRRLDELVQLLKRE 66 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCC-CCceEEEEEEEEc---CHHHHHHHHHHHHHh
Confidence 338999999999999999999999988763221 2111222233332 234777777777553
No 127
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.34 E-value=0.43 Score=46.33 Aligned_cols=68 Identities=21% Similarity=0.144 Sum_probs=51.1
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
..+-+|.+.-.|.+|++..||+.||..|.||...---..+....|-|.+.+.-.+. -.++.++.++.+
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~--VveQa~rQiedl 142 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG--VVEQARRQIEDL 142 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHH--HHHHHHHHHHHh
Confidence 45678999999999999999999999999998876655455777888888765431 244555555544
No 128
>PRK03059 PII uridylyl-transferase; Provisional
Probab=89.99 E-value=1.9 Score=48.27 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe
Q 018502 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV 83 (355)
Q Consensus 38 ~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~ 83 (355)
+.....-++|.|+||||+-|.+++.|+.+|.||++.+-+.. .+|.
T Consensus 674 ~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~ 718 (856)
T PRK03059 674 PAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGY 718 (856)
T ss_pred CCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCe
Confidence 33445688999999999999999999999999999887653 2454
No 129
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.97 E-value=1.2 Score=35.33 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.2
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.++.|.=|||||-.+++.+.|+ ++||.+....
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 4677778999999999999999 7888887664
No 130
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=89.93 E-value=1.3 Score=34.26 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.3
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
..+++.| ++.+|+++++-+.|+++|+|+.-+.+.
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 3567755 577999999999999999999888763
No 131
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.76 E-value=0.82 Score=45.70 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.4
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeee
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADV 75 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q 75 (355)
.-+-|.|.=|||||.++.|++.|++.|+||.|+.-
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i 323 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRI 323 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeeccee
Confidence 44778888899999999999999999999999775
No 132
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=0.79 Score=50.82 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=44.5
Q ss_pred ccCCCCcc-ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 24 SLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 24 ~~~~~~~~-~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+--||..| ++++..-.....++-|.|.||||+.|+|++.++++|.+|....-++
T Consensus 772 ~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT 826 (867)
T COG2844 772 LRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT 826 (867)
T ss_pred cceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc
Confidence 33466544 6777766777899999999999999999999999999999866654
No 133
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.44 E-value=3.4 Score=30.95 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=42.1
Q ss_pred cEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 42 HGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 42 ~~ILTV~Gp--Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
+.+++++|. ..+|+.+++-+.|+++|+||.-++|... +-.. .+-++ .++..+++..+-++|
T Consensus 1 ~a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s--~~si----s~~v~-----~~~~~~av~~Lh~~f 63 (65)
T cd04918 1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS--KVNI----SLIVN-----DSEAEGCVQALHKSF 63 (65)
T ss_pred CcEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc--cceE----EEEEe-----HHHHHHHHHHHHHHH
Confidence 357889997 3679999999999999999999888532 2122 22222 355666666665554
No 134
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=89.32 E-value=2.3 Score=42.68 Aligned_cols=61 Identities=16% Similarity=0.328 Sum_probs=38.6
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCccccccc-ccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN-MILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~-~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
+.+.++++|+|.+-.|.... +.|.+ ..-++..|.+ |.+.+++++..+.+++=+|| ||.+||
T Consensus 216 ~~eav~~aDvvy~~~w~~~~--~~~~~----------~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 216 VDEAVKDADFVYTDVWYGLY--DAELS----------EEERMAIFYPKYQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred HHHHhCCCCEEEEcccHhhc--cchhh----------HHHHHHhhCCCceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 34556689999887764100 00110 0111223444 89999999998889999999 488876
No 135
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=89.12 E-value=3.1 Score=28.70 Aligned_cols=34 Identities=18% Similarity=0.071 Sum_probs=30.4
Q ss_pred EEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 44 ILTV~GpD---r~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
++++.|.+ .+|+.+++.+.|+++++||.-+.|..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57888887 89999999999999999999998864
No 136
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=88.92 E-value=3.3 Score=39.50 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCc--hhHHHHHhhhhc-CCCCeEEEEEEeCCCCCC--CchHHH
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRGP--NSHVIR 175 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g--~~L~~ll~~~~~-~~l~~eI~~Vis~~~~~~--~~~v~~ 175 (355)
.+.+.+....++++| + .+..||+|.+||.. .+|-.++..++. ...+.++.+|-.++.... ...+.+
T Consensus 11 ~~~~~v~~~i~~~~l------i---~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~ 81 (258)
T PRK10696 11 RLRRQVGQAIADFNM------I---EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE 81 (258)
T ss_pred HHHHHHHHHHHHcCC------C---CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence 455556666666665 1 23558999999874 356666655432 333568888877763211 234689
Q ss_pred HHHHCCCCeEEeC
Q 018502 176 FLERHGIPYHYLC 188 (355)
Q Consensus 176 ~a~~~gIP~~~~~ 188 (355)
+|+++|||++.+.
T Consensus 82 ~~~~lgI~~~v~~ 94 (258)
T PRK10696 82 YLESLGVPYHIEE 94 (258)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999998754
No 137
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.50 E-value=2.4 Score=43.65 Aligned_cols=68 Identities=10% Similarity=-0.061 Sum_probs=47.1
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 39 ~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
...+|-|.+...|+||+.++|++.++++|+||..+.|... ..+.--+.+.... .+..++++.++++.+
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~----~~e~~l~~~i~~L~~ 412 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHE----TSEAALRAALAAIEA 412 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence 3467999999999999999999999999999999988632 1122222222221 234666666666543
No 138
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.43 E-value=3.4 Score=35.26 Aligned_cols=64 Identities=6% Similarity=0.034 Sum_probs=40.9
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~-~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
.-+.+.-+|+||-.+.|=+.++++|+|++.+...-.. ..+.|.--+.++.. .+.+..+++.+.+
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~-----~~~~~~aL~~L~~ 106 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH-----RSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC-----HHHHHHHHHHHHH
Confidence 3334444999999999999999999999998876321 12222223333322 2356777766643
No 139
>PRK11899 prephenate dehydratase; Provisional
Probab=87.61 E-value=3.9 Score=40.00 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=44.4
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
+.-|.+.-+|+||..+.+=+.++++|+|++.+...-.. .+.+--+.-+|+++ ..+-+.++++|+++.+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~-~~~~~Y~F~id~eg-~~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVG-GSFTATQFYADIEG-HPEDRNVALALEELRF 261 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecC-CCCceEEEEEEEEC-CCCCHHHHHHHHHHHH
Confidence 43333334899999999999999999999998776321 22222233344443 2234678888888754
No 140
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.51 E-value=5.3 Score=29.00 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=30.4
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
.+++++|. +++|+.+++.+.|+++|+|+.-++|..
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35788885 789999999999999999999988854
No 141
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=87.45 E-value=1 Score=47.40 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~ 123 (355)
-|-|+|.||.||+..|...|+.+++|+..+... +. |. +.+..+. .+++.+..-++++..--|+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~--~~-~~----~~~~~~~--~~~~~~~~~~~~~~~~~gv-------- 64 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID--PI-GR----IYLNFAE--LEFESFSSLMAEIRRIAGV-------- 64 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc--CC-Ce----EEEeCCC--cChhhHHHHHHHHhcCCCc--------
Confidence 367999999999999999999999999998874 32 33 4445553 3455554444433222222
Q ss_pred CCCCCceEEEEEeCCch-hHHHHHhhhhcC
Q 018502 124 DIDPKYKVAVLASKQEH-CLVDFLYGWQEG 152 (355)
Q Consensus 124 ~~~~~~riavl~S~~g~-~L~~ll~~~~~~ 152 (355)
...++|.++-+-..+ -|..+|+.+.+|
T Consensus 65 --~~~~~~~~~~~e~e~~~L~aIL~sm~eG 92 (520)
T PRK10820 65 --TDVRTVPFMPSEREHRALSALLEALPEP 92 (520)
T ss_pred --cchhhhccChHHHHHHHHHHHHHhCCCc
Confidence 223445555443332 355666655444
No 142
>PRK08526 threonine dehydratase; Provisional
Probab=87.40 E-value=2 Score=43.98 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=36.4
Q ss_pred CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 35 ~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
.+-.+...+.+.+.=|||||-.+++++.+++.|.||+++++.-
T Consensus 319 ~l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 319 GLIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred HHHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 3444566678888889999999999999999999999998853
No 143
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=87.23 E-value=3.9 Score=40.41 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=38.5
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
+.+.++++|++.+-+|.. .. +.+. ..-...-+-+|.+..++++..+.+++=+||. |.+||.
T Consensus 211 ~~~a~~~aDvvy~~~w~~-~~-~~~~-----------~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl--P~~R~~ 271 (304)
T PRK00779 211 PKEAVKGADVVYTDVWVS-MG-QEAE-----------AEERLKAFAPYQVNEELMALAKPDAIFMHCL--PAHRGE 271 (304)
T ss_pred HHHHhCCCCEEEecCccc-cc-cchh-----------HHHHHHHhcccCCCHHHHHhcCCCeEEecCC--CccCCC
Confidence 345555899998877743 00 0000 0011233456789999999888889999984 877753
No 144
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=87.16 E-value=7.9 Score=43.32 Aligned_cols=101 Identities=3% Similarity=-0.020 Sum_probs=71.7
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhcc
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~ 117 (355)
.-.+++++|. .++|+.+++-+.|++.|+|++...+. +. .+.+.+ +.+...+++..+-++|-.
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s-----~~-sis~vV-------~~~d~~~av~~LH~~f~~-- 454 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSED-----GL-SLVAVL-------RQGPTESLIQGLHQSLFR-- 454 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeCC-----Cc-EEEEEE-------ehHHHHHHHHHHHHHHhC--
Confidence 6689999996 58899999999999999999876653 11 222333 236677888888777721
Q ss_pred ceeeeCCCCCCceEEEEEeCC-chhHHHHHhhhh-----cCCCCeEEEEEEe
Q 018502 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ-----EGKLPVEITCVIS 163 (355)
Q Consensus 118 ~~~~~~~~~~~~riavl~S~~-g~~L~~ll~~~~-----~~~l~~eI~~Vis 163 (355)
..+..+|++++-|. |..+..+|...+ ...++.+|++|..
T Consensus 455 -------~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 455 -------AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred -------cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 23568999998777 778888776532 1234677888864
No 145
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=87.08 E-value=6 Score=28.20 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=28.0
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 44 ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 467777 467899999999999999999888763
No 146
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=86.92 E-value=4.6 Score=38.49 Aligned_cols=79 Identities=27% Similarity=0.295 Sum_probs=50.5
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC--------Cc-hHHHHHHHCCCCeEEeCCCC-ChhH-HH
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NS-HVIRFLERHGIPYHYLCAKE-NERE-EE 197 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~--------~~-~v~~~a~~~gIP~~~~~~~~-~~~~-~~ 197 (355)
+|+++|.||.--...++..+++.| ++|.+.++-++... |. -+...|+..|||+..+.... .+++ ++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 477788887643345666667666 78887776554333 22 24567888999998877433 1222 56
Q ss_pred HHHHhc--CCCEEEE
Q 018502 198 LLELVQ--NTDFLVL 210 (355)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (355)
+.+.+. +.|.+|.
T Consensus 78 L~~~l~~l~~d~iv~ 92 (223)
T COG2102 78 LKEALRRLKVDGIVA 92 (223)
T ss_pred HHHHHHhCcccEEEE
Confidence 666666 7888875
No 147
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.36 E-value=3 Score=33.16 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=25.6
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 49 CPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 49 GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.++.+|..++|-+.|+++|+|+.-+.|.
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs 38 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATS 38 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEec
Confidence 4788999999999999999999999883
No 148
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=85.87 E-value=6 Score=39.62 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcC-CCeEEecCCCCCCCCCch
Q 018502 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYG-KDVINIHHGLLPSFKGGK 274 (355)
Q Consensus 199 ~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~-~~~INiHpslLP~yrG~~ 274 (355)
.+.++++|+|.+-.|.. .. + +. +. ++-....+-+|.+.+++++..+ ..++=+|| ||++||..
T Consensus 219 ~ea~~~aDvvy~~~w~~-~~-~-~~--~~-------~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~e 281 (332)
T PRK04284 219 DEGVKGSDVIYTDVWVS-MG-E-PD--EV-------WEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDLD 281 (332)
T ss_pred HHHhCCCCEEEECCccc-Cc-c-ch--hh-------HHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCcc
Confidence 34556899998877743 00 0 00 00 0011234457889999999875 37999999 59998754
No 149
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=85.86 E-value=7.4 Score=29.40 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred EEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 43 GIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 43 ~ILTV~GpD--r~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
.+++++|.. ++|+.+++.+.|++.|+|+.-++|... +- .+.+-++ .++..+++..+-++|
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s--~~----~is~~V~-----~~~~~~av~~Lh~~f 64 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMR--NV----DVQFVVD-----RDDYDNAIKALHAAL 64 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCC--ee----EEEEEEE-----HHHHHHHHHHHHHHH
Confidence 578888863 589999999999999999999988632 11 2222222 355566666665544
No 150
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.86 E-value=4.5 Score=28.25 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 50 PDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 50 pDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+|.+|+.+++.+.|+++|+||.-++|..
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 7789999999999999999999998864
No 151
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.91 E-value=9.1 Score=27.22 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=28.3
Q ss_pred EEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 44 ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 467877 467899999999999999999888764
No 152
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.79 E-value=3 Score=32.61 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=25.4
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 49 CPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 49 GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.++.+|..++|-+.|+++|+|+.-+.|.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s 38 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTS 38 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 4688999999999999999999999873
No 153
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=84.64 E-value=10 Score=38.15 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=21.8
Q ss_pred ccccCChHHHh-hcCCCeEEecCCCCCCCCC
Q 018502 243 FNMILSGKFLR-SYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 243 ~~~il~~~~l~-~~~~~~INiHpslLP~yrG 272 (355)
-+|.+.+++++ ..+..++=+|| ||++||
T Consensus 251 ~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 251 GKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred hccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 34789999984 46778999999 588866
No 154
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=84.41 E-value=4.6 Score=40.13 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred chhHHHHHhhh----hcCCCCeEEEEEEeCCC-CCCCchHHHHHHHCCC-CeEEeCCCCChh----------HHHHHHHh
Q 018502 139 EHCLVDFLYGW----QEGKLPVEITCVISNHD-RGPNSHVIRFLERHGI-PYHYLCAKENER----------EEELLELV 202 (355)
Q Consensus 139 g~~L~~ll~~~----~~~~l~~eI~~Vis~~~-~~~~~~v~~~a~~~gI-P~~~~~~~~~~~----------~~~~~~~l 202 (355)
.|..|.|++.+ .-|.+..--++++.+.. ..-..++...+...|+ -+..+..+.-.. ..++.+.+
T Consensus 136 ~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~ 215 (310)
T PRK13814 136 QHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSL 215 (310)
T ss_pred CCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHh
Confidence 47777776652 13555432333444321 0012356778889998 565554321111 12344566
Q ss_pred cCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccc-cccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 203 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYF-NMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 203 ~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~-~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
+++|++..-+|.+ |- .++..+.-.|. +|.+.+++++..+.+++=+|| ||++||-
T Consensus 216 ~~aDvvy~~~~~~------er---------~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 216 LNSDVIVTLRLQK------ER---------HDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred CCCCEEEECcccc------cc---------ccchhHHHHhCCCcccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 6899998877743 10 11112223344 489999999988889999999 5999764
No 155
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=84.39 E-value=7 Score=31.80 Aligned_cols=66 Identities=9% Similarity=-0.025 Sum_probs=57.0
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
|.|-++++..++||.+..|=......|.-+-.++++.....|.-..-+.|+.+. +.+-|...|+++
T Consensus 2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R---~~~lL~~QLeKl 67 (86)
T COG3978 2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR---SVDLLTSQLEKL 67 (86)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC---ChHHHHHHHHHH
Confidence 889999999999999999999999999999998888766688877777776654 688999988865
No 156
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=84.07 E-value=1.9 Score=43.42 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCe
Q 018502 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~ 184 (355)
++.||+|++++.|... +..++.-.-.+++++|++... ....++|+++|||+
T Consensus 2 ~~~rVgViG~~~G~~h---~~al~~~~~~~eLvaV~d~~~----erA~~~A~~~gi~~ 52 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFY---LAAFAAAPERFELAGILAQGS----ERSRALAHRLGVPL 52 (343)
T ss_pred CCcEEEEEeHHHHHHH---HHHHHhCCCCcEEEEEEcCCH----HHHHHHHHHhCCCc
Confidence 4689999998665432 222222111489999987653 35688999999994
No 157
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=83.88 E-value=20 Score=32.69 Aligned_cols=103 Identities=14% Similarity=0.048 Sum_probs=69.4
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccce
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~-~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~ 119 (355)
|++-+.+-=+|+||-.-+|=+=|.+.|+||+.+...-+.. +++-...+.|+.+. .+..++-.+.+ ++.|+. .
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~--I 76 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGII--I 76 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcE--E
Confidence 6788888899999999999999999999999987765433 56666777777663 23444444444 666763 2
Q ss_pred eeeCCCCCCceEEEEEeCC--chhHHHHHhhhh
Q 018502 120 VRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQ 150 (355)
Q Consensus 120 ~~~~~~~~~~riavl~S~~--g~~L~~ll~~~~ 150 (355)
.++...+.+-+.-++.-|. .+.++|-+++..
T Consensus 77 ~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In 109 (170)
T COG2061 77 IRFDGARLREKTDVVLIGHIVHTDIQDTIDRIN 109 (170)
T ss_pred EEecCcCcceeEeEEEEEeeecCcHHHHHHHhh
Confidence 4444444444443333333 468999998863
No 158
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=83.57 E-value=11 Score=28.60 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.5
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+++++|. +.+|+.+++-+.|+++|+|+.-++|.
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 35778664 77899999999999999999999886
No 159
>PRK06291 aspartate kinase; Provisional
Probab=82.59 E-value=24 Score=36.77 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=51.6
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccc
Q 018502 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (355)
Q Consensus 42 ~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~ 118 (355)
-.++++.|. +.+|+.+++.+.|+++|+|+.-++|... . +.+.|-++. +.+.++++.+.+.|.-..
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~ss--e----~sIsf~V~~-----~d~~~av~~L~~~~~~~~- 388 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSS--E----SNISLVVDE-----ADLEKALKALRREFGEGL- 388 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC--C----ceEEEEEeH-----HHHHHHHHHHHHHHHHhc-
Confidence 368899886 6899999999999999999999988632 2 223333332 334455555555443100
Q ss_pred eeeeCCCCCCceEEEEEeCC
Q 018502 119 VVRVPDIDPKYKVAVLASKQ 138 (355)
Q Consensus 119 ~~~~~~~~~~~riavl~S~~ 138 (355)
...+...++.-+|.+.+.+.
T Consensus 389 ~~~i~~~~~~a~IsvvG~gm 408 (465)
T PRK06291 389 VRDVTFDKDVCVVAVVGAGM 408 (465)
T ss_pred CcceEEeCCEEEEEEEcCCc
Confidence 01122234455677666543
No 160
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=82.46 E-value=9.5 Score=37.68 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=42.6
Q ss_pred hHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHH
Q 018502 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKF 251 (355)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~ 251 (355)
.+.+.|+++|..+.... ++.+.++++|+|..-+| + .|.+.+. .-.....-+|.+..++
T Consensus 192 ~~~~~~~~~G~~v~~~~--------d~~~a~~~aDvvyt~~~-~-----~er~~~~--------~~~~~~~~~y~v~~el 249 (301)
T TIGR00670 192 EILEELKAKGIKVRETE--------SLEEVIDEADVLYVTRI-Q-----KERFPDP--------EEYEKYKGSYGITLER 249 (301)
T ss_pred HHHHHHHHcCCEEEEEC--------CHHHHhCCCCEEEECCc-c-----ccccCCH--------HHHHHHhcCCeECHHH
Confidence 34455555555544322 23455668999977655 2 2221110 0011123477899999
Q ss_pred HhhcCCCeEEecCCC
Q 018502 252 LRSYGKDVINIHHGL 266 (355)
Q Consensus 252 l~~~~~~~INiHpsl 266 (355)
++..+.+++=+||..
T Consensus 250 l~~a~~~ai~mHclP 264 (301)
T TIGR00670 250 LEAAKKGVIIMHPLP 264 (301)
T ss_pred HhhcCCCCEEECCCC
Confidence 998888899999963
No 161
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=82.35 E-value=8.3 Score=39.22 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=74.5
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCC-C-CCC-C-------chHHHHHHHCCCCeEEeC-CCC---
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH-D-RGP-N-------SHVIRFLERHGIPYHYLC-AKE--- 191 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~-~-~~~-~-------~~v~~~a~~~gIP~~~~~-~~~--- 191 (355)
.++||+|..||. .|.+.+.|-. +.| +||.+|.-+. + ++. . .++.+.|+..|||++.++ .++
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk-~QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~ 77 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLK-EQG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWN 77 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHH-HcC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHH
Confidence 468999999987 4666654432 124 8999986643 3 122 1 258899999999999886 220
Q ss_pred ----------------C----h-hH---HHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccc
Q 018502 192 ----------------N----E-RE---EELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNM 245 (355)
Q Consensus 192 ----------------~----~-~~---~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~ 245 (355)
| - ++ ..+++.+. ++|++.+..|-+.-+ -...+.++++...+=++| ||-+
T Consensus 78 ~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~----~~~~~~l~r~~D~~KDQs-YfL~ 152 (356)
T COG0482 78 KVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE----DEGIELLLRGVDLNKDQS-YFLY 152 (356)
T ss_pred HHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeec----CCcccccccCCCcccchh-heec
Confidence 0 0 11 23334333 789999999988332 222556666666665554 6666
Q ss_pred cCChHHHhh
Q 018502 246 ILSGKFLRS 254 (355)
Q Consensus 246 il~~~~l~~ 254 (355)
-++++-++.
T Consensus 153 ~~~~~ql~~ 161 (356)
T COG0482 153 ALSQEQLER 161 (356)
T ss_pred ccCHHHHhh
Confidence 677776664
No 162
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=6.7 Score=43.84 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=53.5
Q ss_pred CccccC-CCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCe-EEEEEEEEeCCCCCChHHHHHHH
Q 018502 29 GEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV-FYSRSEFIFDPIKWPREQMDEDF 106 (355)
Q Consensus 29 ~~~~~~-~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~-F~Mr~~v~~~~~~~~~~~L~~~l 106 (355)
+.|+-- |..++..-.=|+|.|||+|.+-+.|+..+..+|+||+|.+-++. .+|+ +--.+.-+..+..++.+...+..
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt-~dG~alDtfiv~~~~g~~~~~dr~~~~~ 748 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTT-RDGYALDTFIVLEPDGFPVEEDRRAALR 748 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEc-cCCceeeeEEEecCCCCccchhHHHHHH
Confidence 444433 55455555778999999999999999999999999999887764 4563 33333333344334433333333
Q ss_pred HHHHhhh
Q 018502 107 FKLSKMF 113 (355)
Q Consensus 107 ~~la~~l 113 (355)
.++.+.+
T Consensus 749 ~~l~~~l 755 (867)
T COG2844 749 GELIEAL 755 (867)
T ss_pred HHHHHHH
Confidence 3444443
No 163
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=81.89 E-value=9.5 Score=38.34 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhc-CCCeEEecCCCCCCCCCc
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~-~~~~INiHpslLP~yrG~ 273 (355)
+.+.++++|+|..-.|..-- +.+. .+.-+.....+|.+.+++++.. +.+++=+|| ||+++|.
T Consensus 219 ~~ea~~~aDvvytd~W~sm~--~~~~----------~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 219 IAEGVKGADFIYTDVWVSMG--EPKE----------VWAERIALLRPYQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred HHHHhCCCCEEEecCcccCc--chhH----------HHHHHHHhccCCccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 34556689999887765300 0000 0011123345788999999974 567999999 5999885
No 164
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=81.79 E-value=3.3 Score=42.39 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 33 ~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
+-++..+...+.+.|.=|||||-.+++.+.+...+.||++.+..
T Consensus 316 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 316 ERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 33445566778889999999999999999788888899998876
No 165
>PRK06635 aspartate kinase; Reviewed
Probab=81.61 E-value=6.7 Score=39.58 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=43.2
Q ss_pred ccEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 41 ~~~ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+-.+++++| +|++|+.+++.+.|+++|+||.-+++. .... .|-++ .+...++++.+-++|.
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss----~~~i----s~vv~-----~~d~~~a~~~Lh~~f~ 402 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS----EIKI----SVLID-----EKYLELAVRALHEAFG 402 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec----CCeE----EEEEc-----HHHHHHHHHHHHHHHC
Confidence 557899988 699999999999999999999988653 2222 22222 2445566666666664
No 166
>PRK08639 threonine dehydratase; Validated
Probab=81.14 E-value=3.7 Score=42.10 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=35.8
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 33 ~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
+-.+..+...+.+++.=|||||-.+++.+.+.+.+.||++++..
T Consensus 327 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 327 ERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 33445566677888888999999999999777777799999775
No 167
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=80.84 E-value=12 Score=34.43 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=35.0
Q ss_pred eEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC---------chHHHHHHHCCCCeEEeC
Q 018502 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 130 riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~---------~~v~~~a~~~gIP~~~~~ 188 (355)
|++++.||. .|++.. ....+.| .++.++++..+.... ..+...|+..|||...++
T Consensus 1 kv~v~~SGGkDS~~al-~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~ 65 (194)
T cd01994 1 KVVALISGGKDSCYAL-YRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIE 65 (194)
T ss_pred CEEEEecCCHHHHHHH-HHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEe
Confidence 678888876 355433 3333344 678877765432211 246788999999998876
No 168
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=80.27 E-value=9.5 Score=39.00 Aligned_cols=66 Identities=6% Similarity=-0.002 Sum_probs=43.9
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
+++++ +|+||-.+.+=+.++.+|+|.+.+...-.+ .+.|--+.-+|+.+ ....+.++++|+++.+.
T Consensus 300 l~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~-~~~~~Y~Ffid~eg-~~~d~~~~~aL~~l~~~ 365 (386)
T PRK10622 300 LLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIH-GNPWEEMFYLDVQA-NLRSAEMQKALKELGEI 365 (386)
T ss_pred EEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecC-CCCceEEEEEEEeC-CCCCHHHHHHHHHHHHh
Confidence 44444 799999999999999999999998776211 22222233344443 22346788888887553
No 169
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=79.43 E-value=6.7 Score=37.06 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=40.8
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC---------chHHHHHHHCCCCeEEeCCC--CChhHHH
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK--ENEREEE 197 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~---------~~v~~~a~~~gIP~~~~~~~--~~~~~~~ 197 (355)
+|++++-||.--|..++..+.+. .+|++.+|-.+...+ .-+...|+..|||...+..+ .....++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 58889988775344455555544 567666653322111 23677889999999877643 1222356
Q ss_pred HHHHhc--CCCEEEE
Q 018502 198 LLELVQ--NTDFLVL 210 (355)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (355)
+.+.++ ++|-+|.
T Consensus 77 l~~~l~~~~v~~vv~ 91 (218)
T PF01902_consen 77 LKEALKELKVEAVVF 91 (218)
T ss_dssp HHHHHCTC--SEEE-
T ss_pred HHHHHHHcCCCEEEE
Confidence 777776 6777753
No 170
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=79.28 E-value=15 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.7
Q ss_pred cccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 242 YFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 242 y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
+-+|.+.+++++..+.+++=+||. |+.||
T Consensus 241 ~~~y~l~~~~l~~~~~~~ivmHpl--P~~rg 269 (304)
T TIGR00658 241 FRPYQVNEELMELAKPEVIFMHCL--PAHRG 269 (304)
T ss_pred hcCCcCCHHHHhhcCCCCEEECCC--CCCCC
Confidence 456789999999998899999995 88875
No 171
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=78.62 E-value=28 Score=34.92 Aligned_cols=61 Identities=10% Similarity=-0.027 Sum_probs=36.8
Q ss_pred HHHHhcCCCEEEEEeecccc-chhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 198 LLELVQNTDFLVLARYMQPV-PLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~-~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
..+.++++|++..-+|..-- ..+.+.+- .....+-+|.+.+++++..+ .++=+||. |..||
T Consensus 238 ~~ea~~~aDvvy~~~w~~~~~~~~~~~~~-----------~~~~~~~~y~v~~~ll~~a~-~~i~mHcL--P~~Rg 299 (335)
T PRK04523 238 IDSAYAGADVVYAKSWGALPFFGNWEPEK-----------PIRDQYQHFIVDERKMALTN-NGVFSHCL--PLRRN 299 (335)
T ss_pred HHHHhCCCCEEEeceeeccccCCcccccH-----------HHHHhCcCCcCCHHHHhCCC-CCEEECCC--CCCCC
Confidence 34556689999998885300 00000000 00123456889999998765 78999994 88765
No 172
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=78.55 E-value=15 Score=36.74 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhc-CCCeEEecCCCCCCCCCc
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~-~~~~INiHpslLP~yrG~ 273 (355)
+.+.++++|+|.+-.|.. ...+.+.+.++ ...+-+|.+.+++++.. +..++=+|| ||+++|.
T Consensus 219 ~~~a~~~aDvVyt~~w~s-m~~~~~~~~~~-----------~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 219 IDKAVKGVDFVHTDVWVS-MGEPLETWGER-----------IKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred HHHHhCCCCEEEEcceee-cccchhhHHHH-----------HHhccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 345566899998877632 11111111111 11344678999999875 567999999 5999885
No 173
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=78.38 E-value=15 Score=34.94 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=46.3
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC--------C-chHHHHHHHCCCCeEEeCCC-CC-hhHHH
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAK-EN-EREEE 197 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~-~~-~~~~~ 197 (355)
+|++++.||.--+..+++.+.+. .+|+++++-.+... + .-+...|+..|||++.++.. .. ...++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 46778888765455566665544 46777665543321 1 23557889999998765422 11 12345
Q ss_pred HHHHhc--CCCEEEE
Q 018502 198 LLELVQ--NTDFLVL 210 (355)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (355)
+.+.++ ++|.+|.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 77 LKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHcCCCEEEE
Confidence 666665 6777764
No 174
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=78.28 E-value=30 Score=34.62 Aligned_cols=119 Identities=16% Similarity=0.243 Sum_probs=68.8
Q ss_pred CCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHH----CCCCeEEeCCCCChhHHHHHHHh
Q 018502 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER----HGIPYHYLCAKENEREEELLELV 202 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~----~gIP~~~~~~~~~~~~~~~~~~l 202 (355)
+..|+|+++-++ .-...|+.... .+..++. |.++..-.++..+.+.|++ .|--+.... +..+.+
T Consensus 152 ~g~k~a~vGDgN-Nv~nSl~~~~a--~~G~dv~-ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~--------d~~eAv 219 (310)
T COG0078 152 KGLKLAYVGDGN-NVANSLLLAAA--KLGMDVR-IATPKGYEPDPEVVEKAKENAKESGGKITLTE--------DPEEAV 219 (310)
T ss_pred cCcEEEEEcCcc-hHHHHHHHHHH--HhCCeEE-EECCCcCCcCHHHHHHHHHHHHhcCCeEEEec--------CHHHHh
Confidence 457899887662 22344444321 2335665 3444432234556555544 453333322 234456
Q ss_pred cCCCEEEEEeeccccchhhHhhhhhhhhhhhcccC-cccccccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 203 QNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKG-SLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 203 ~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~-~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
+++|+|..-.|.. ..+..+... ..-+.=+|-+.+++++..+...+=.|- ||++||
T Consensus 220 ~gADvvyTDvWvS-------------MGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC--LPA~rG 275 (310)
T COG0078 220 KGADVVYTDVWVS-------------MGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC--LPAHRG 275 (310)
T ss_pred CCCCEEEecCccc-------------CcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC--CCCCCC
Confidence 6888888777754 223333222 222334488999999999889999997 899997
No 175
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=78.06 E-value=7.5 Score=33.86 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.6
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
..+++.|| |-+||++.|++-|+++|+-|--++.|.
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 46677776 779999999999999999999999984
No 176
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=77.93 E-value=18 Score=34.41 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=46.0
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC--------C-chHHHHHHHCCCCeEEeCCCCC--hhHHH
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------N-SHVIRFLERHGIPYHYLCAKEN--EREEE 197 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~--------~-~~v~~~a~~~gIP~~~~~~~~~--~~~~~ 197 (355)
+|++++.||.--+..+++...+. .+|+++++..+... + .-+...|+..|||++.+..+.. ...++
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~~ 76 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVED 76 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHHH
Confidence 47888888764333444444432 47777777654321 1 2356789999999876653221 11245
Q ss_pred HHHHhc--CCCEEEE
Q 018502 198 LLELVQ--NTDFLVL 210 (355)
Q Consensus 198 ~~~~l~--~~Dlivl 210 (355)
+.+.+. ++|-+|.
T Consensus 77 l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 77 LAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHcCCCEEEE
Confidence 555554 6777764
No 177
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.08 E-value=16 Score=27.17 Aligned_cols=32 Identities=3% Similarity=-0.022 Sum_probs=26.1
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEee
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAAD 74 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~ 74 (355)
.+++++|. +.+|+.+++.+.|++.|+++....
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~ 35 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQA 35 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEe
Confidence 36889996 679999999999999887775433
No 178
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=77.04 E-value=13 Score=39.74 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.6
Q ss_pred ccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 243 FNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 243 ~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
-+|.+.+++++..+.+++=+|| ||++||.
T Consensus 271 ~~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 271 KAVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred cCcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 4788999999988888999999 5999994
No 179
>PLN02551 aspartokinase
Probab=76.57 E-value=41 Score=35.87 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=51.9
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccc
Q 018502 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (355)
Q Consensus 42 ~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~ 118 (355)
-..|++.|. +++|+.++|-+.|+++|+||.-+.|.- ...-+.++-+.. ...+.+++.++++.++++- .
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssSe------~sIs~~v~~~~~-~~~~~i~~~l~~l~~el~~-~- 436 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE------VSISLTLDPSKL-WSRELIQQELDHLVEELEK-I- 436 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEeccC------CEEEEEEehhHh-hhhhhHHHHHHHHHHHhhc-C-
Confidence 367888877 589999999999999999999997741 122223332221 1123455556555555541 1
Q ss_pred eeeeCCCCCCceEEEEEeC
Q 018502 119 VVRVPDIDPKYKVAVLASK 137 (355)
Q Consensus 119 ~~~~~~~~~~~riavl~S~ 137 (355)
.++.-.+..-+|++.+..
T Consensus 437 -~~V~v~~~vAiISvVG~~ 454 (521)
T PLN02551 437 -AVVNLLQGRSIISLIGNV 454 (521)
T ss_pred -CeEEEeCCEEEEEEEccC
Confidence 112223455677777663
No 180
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=76.33 E-value=8.7 Score=27.93 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 50 PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 50 pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
++++|..++|-+.|+++|+|+.-+.+.
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~ 37 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTS 37 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecC
Confidence 367899999999999999999999773
No 181
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=76.23 E-value=12 Score=36.76 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=44.2
Q ss_pred CcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 39 ~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~-~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
....+++++ +|+||-..++=+.++.+|+|...+...-.. .-|.|+.-+.+ ++ ..+-..++++|+++.+
T Consensus 193 ~kTsl~f~~--~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg-~~~~~~v~~AL~el~~ 261 (279)
T COG0077 193 EKTSLIFSV--PNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EG-HIDDPLVKEALEELKE 261 (279)
T ss_pred ceEEEEEEc--CCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ec-CcCcHhHHHHHHHHHh
Confidence 344455555 599999999999999999999876654211 11223334444 43 2234788888888754
No 182
>PRK08841 aspartate kinase; Validated
Probab=75.91 E-value=12 Score=38.18 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=49.1
Q ss_pred cccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 40 ~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
..-.+++++|...+|+.+++.+.|+++|+||..++|. + - .+.+-+ +.++..+++..+-++|..
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s-----~-~--~is~vv-----~~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE-----P-Q--SSMLVL-----DPANVDRAANILHKTYVT 378 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC-----C-c--EEEEEE-----eHHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999999999999888773 1 1 222222 346778888888888865
No 183
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=75.38 E-value=22 Score=35.75 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHh-hcCCCeEEecCCCCCC
Q 018502 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLR-SYGKDVINIHHGLLPS 269 (355)
Q Consensus 199 ~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~-~~~~~~INiHpslLP~ 269 (355)
.+.++++|++.+-.|.. .. +.. ++.-....+-+|.+.+++++ ..+..++=+||. |+
T Consensus 219 ~ea~~~aDvvyt~~w~~-~~-~~~-----------~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l--P~ 275 (331)
T PRK02102 219 EEAVKGADVIYTDVWVS-MG-EED-----------EWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL--PA 275 (331)
T ss_pred HHHhCCCCEEEEcCccc-Cc-ccc-----------chHHHHHhccCCcCCHHHHhhhcCCCCEEECCC--CC
Confidence 34555899998766632 00 000 00111223456789999998 467789999995 76
No 184
>PRK09181 aspartate kinase; Validated
Probab=75.17 E-value=50 Score=34.80 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=54.2
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhcc
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~ 117 (355)
+-..+++.|. +.+|+.++|-+.|+++|+||.-+.+.. . -+.+-++. +.+.+++.++++.++++..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~----~----sis~~v~~---~~~~~~~~~~~L~~~~~~~- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNA----N----TITHYLWG---SLKTLKRVIAELEKRYPNA- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecC----c----EEEEEEcC---ChHHHHHHHHHHHHhcCCc-
Confidence 3457788765 689999999999999999998655532 1 22233343 1345667777777777642
Q ss_pred ceeeeCCCCCCceEEEEEeCCc
Q 018502 118 SVVRVPDIDPKYKVAVLASKQE 139 (355)
Q Consensus 118 ~~~~~~~~~~~~riavl~S~~g 139 (355)
. +.. +..-+|++.+.+-.
T Consensus 396 -~--i~~-~~~a~VsvVG~gm~ 413 (475)
T PRK09181 396 -E--VTV-RKVAIVSAIGSNIA 413 (475)
T ss_pred -e--EEE-CCceEEEEeCCCCC
Confidence 1 222 45667888877653
No 185
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=74.86 E-value=15 Score=37.15 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=67.6
Q ss_pred CCceEEEEEeCC-ch-hHHHHHhhhhcCCCCeEEEEEEeCC-CCC-CC---chHHHHHHHCCCCeEEeCCC---------
Q 018502 127 PKYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNH-DRG-PN---SHVIRFLERHGIPYHYLCAK--------- 190 (355)
Q Consensus 127 ~~~riavl~S~~-g~-~L~~ll~~~~~~~l~~eI~~Vis~~-~~~-~~---~~v~~~a~~~gIP~~~~~~~--------- 190 (355)
+..||+|..||. .| .+..+|.. . ..++.+|..+. +.. +. ..+.++|+++|||++.++..
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~--~---G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~ 78 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE--A---GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIID 78 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH--c---CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHh
Confidence 456999999987 34 33444442 2 36788876653 211 11 23688999999999987631
Q ss_pred --------C---Ch-----h---HHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCCh
Q 018502 191 --------E---NE-----R---EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSG 249 (355)
Q Consensus 191 --------~---~~-----~---~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~ 249 (355)
. +. + -..+.++.+ ++|.++++.|.+. |.+ .+.|.|+++-...-++ +||-+.++.
T Consensus 79 ~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~---~~~-~~~~~l~~g~D~~kDQ-SyfL~~l~~ 153 (360)
T PRK14665 79 YFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRK---QWI-DGNYYITPAEDVDKDQ-SFFLWGLRQ 153 (360)
T ss_pred hhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccce---ecc-CCcEEEEeecCCCCCc-eEEecCCCH
Confidence 0 00 0 011222222 6999999999862 111 1334455444444444 455666777
Q ss_pred HHHhhc
Q 018502 250 KFLRSY 255 (355)
Q Consensus 250 ~~l~~~ 255 (355)
+.+++.
T Consensus 154 ~~l~~~ 159 (360)
T PRK14665 154 EILQRM 159 (360)
T ss_pred HHHhhe
Confidence 777644
No 186
>PLN02527 aspartate carbamoyltransferase
Probab=74.41 E-value=27 Score=34.53 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=44.6
Q ss_pred hHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHH
Q 018502 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKF 251 (355)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~ 251 (355)
.+.+.++++|..+.... ++.+.++++|+|.+-+ +| .|-+.+. .+.+ ...+-+|.+..++
T Consensus 194 ~~~~~~~~~g~~~~~~~--------d~~~a~~~aDvvyt~~-~q-----~e~~~~~--~~~~-----~~~~~~y~v~~~l 252 (306)
T PLN02527 194 DIKDYLTSKGVEWEESS--------DLMEVASKCDVLYQTR-IQ-----RERFGER--IDLY-----EAARGKYIVDKKV 252 (306)
T ss_pred HHHHHHHHcCCEEEEEc--------CHHHHhCCCCEEEECC-cc-----hhhhcch--HHHH-----HHhCCCceECHHH
Confidence 45555666665554432 2345666899997743 33 2222111 0000 1122458899999
Q ss_pred HhhcCCCeEEecCCCCCCCCC
Q 018502 252 LRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 252 l~~~~~~~INiHpslLP~yrG 272 (355)
++..+.+++=+||. | ||
T Consensus 253 l~~a~~~~ivmHcl--P--Rg 269 (306)
T PLN02527 253 MDVLPKHAVVMHPL--P--RL 269 (306)
T ss_pred HhccCCCCEEECCC--C--Cc
Confidence 99888889999996 5 66
No 187
>PRK06635 aspartate kinase; Reviewed
Probab=74.17 E-value=45 Score=33.64 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=30.3
Q ss_pred EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeecc
Q 018502 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVP 78 (355)
Q Consensus 43 ~ILTV~G-pDr~GIVA~VS~~La~~g~NIld~~q~id 78 (355)
..+++.| .+++|+.+++.+.|+++|+||.-++|...
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~ 299 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVS 299 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC
Confidence 4566665 56789999999999999999999999743
No 188
>PRK07431 aspartate kinase; Provisional
Probab=73.39 E-value=28 Score=37.13 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=60.6
Q ss_pred EEEEE-cCCccchHHHHHHHHHhcCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceee
Q 018502 44 IHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (355)
Q Consensus 44 ILTV~-GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~-g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~ 121 (355)
.+|+. -++++|+.+++.+.|+++|+||.-++|+....+ |.- .+.|.++.. +.+.+.+.++++.++++. .+
T Consensus 441 ~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~--~isf~v~~~--~~~~~~~~l~~l~~~~~~----~~ 512 (587)
T PRK07431 441 QLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTR--DISFTVPKE--DREAAQKVLRELAKQLPG----AE 512 (587)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCce--eEEEEEcHH--HHHHHHHHHHHHHHhcCC----ce
Confidence 44443 467899999999999999999999999643221 222 233444432 345556667766666653 12
Q ss_pred eCCCCCCceEEEEEeCCch---hHHHHHhhhh
Q 018502 122 VPDIDPKYKVAVLASKQEH---CLVDFLYGWQ 150 (355)
Q Consensus 122 ~~~~~~~~riavl~S~~g~---~L~~ll~~~~ 150 (355)
+...+..-+|.+.+.+-.. .+..++..+.
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~ 544 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALA 544 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHH
Confidence 2223456788888875532 3445555543
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=72.90 E-value=16 Score=36.87 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=43.4
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+-.+++++|. +++|+.+++.+.|++.|+||.-.... ..... +.+ +.++..++++.+-++|.
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s----~~~is--~vv-------~~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS----ETNIS--FLV-------DEKDAEKAVRKLHEVFE 399 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC----CCEEE--EEE-------eHHHHHHHHHHHHHHHc
Confidence 5688999996 68999999999999999999865421 22222 222 23566777777776664
No 190
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=72.23 E-value=69 Score=32.55 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEEeecccc----chhh---HhhhhhhhhhhhcccCcccccccccCC
Q 018502 176 FLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPV----PLQK---EAYLGYKLLESLSSKGSLTSYFNMILS 248 (355)
Q Consensus 176 ~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla~y~~~~----~~~~---~~~~~~~~~~~~~~~~~~s~y~~~il~ 248 (355)
+|+++|..+.... ++.+.++++|+|..-+|...- ..|+ +.+.+++.++.+... ....+.+|.+.
T Consensus 225 ~~~~~g~~~~~~~--------d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~vt 295 (357)
T TIGR03316 225 NAAENGGKFNIVN--------SMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLS-QNKKHKDWVCT 295 (357)
T ss_pred HHHHcCCeEEEEc--------CHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchh-HHHHhcCCeEC
Confidence 4556776665432 244556689999988875310 0011 011123333222221 22245778999
Q ss_pred hHHHhhcC-CCeEEecCCCCCCC-CCc
Q 018502 249 GKFLRSYG-KDVINIHHGLLPSF-KGG 273 (355)
Q Consensus 249 ~~~l~~~~-~~~INiHpslLP~y-rG~ 273 (355)
.++++..+ ..++=+|| ||++ ||.
T Consensus 296 ~e~l~~a~~~~~i~MHc--LP~~~Rg~ 320 (357)
T TIGR03316 296 EERMALTHDGEALYMHC--LPADIRGV 320 (357)
T ss_pred HHHHHhcCCCCcEEECC--CCCCccCc
Confidence 99999887 67999999 5888 874
No 191
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=72.05 E-value=32 Score=35.92 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=43.5
Q ss_pred hHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHH
Q 018502 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKF 251 (355)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~ 251 (355)
.+.+.++++|.-+.... ++.+.++++|+|.+.++ | .|.+-+ ......+-+|.+.+++
T Consensus 284 ~~~~~~~~~G~~v~~~~--------d~~eav~~ADVVYt~~~-q-----~er~~~---------~~~~~~~~~y~vt~el 340 (429)
T PRK11891 284 YIVEQISRNGHVIEQTD--------DLAAGLRGADVVYATRI-Q-----KERFAD---------ESFEGYTPDFQINQAL 340 (429)
T ss_pred HHHHHHHhcCCeEEEEc--------CHHHHhCCCCEEEEcCc-h-----hhcccC---------HHHHHhccCCcCCHHH
Confidence 44455555554443322 24455668999987543 2 222110 0012345568999999
Q ss_pred Hhh-cCCCeEEecCCCCCCC
Q 018502 252 LRS-YGKDVINIHHGLLPSF 270 (355)
Q Consensus 252 l~~-~~~~~INiHpslLP~y 270 (355)
++. .+..+|=+||. |+.
T Consensus 341 l~~~ak~dai~MHcL--Pr~ 358 (429)
T PRK11891 341 VDAVCKPDTLIMHPL--PRD 358 (429)
T ss_pred HhCccCCCcEEECCC--CCC
Confidence 998 77789999995 644
No 192
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=72.01 E-value=37 Score=32.46 Aligned_cols=81 Identities=10% Similarity=-0.012 Sum_probs=59.3
Q ss_pred ccEEEEEEcCCccc--hHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccc
Q 018502 41 THGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (355)
Q Consensus 41 ~~~ILTV~GpDr~G--IVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~ 118 (355)
..|.+++.|.+..+ +-+.+-+.|.+++..+.+++.......+..-+..++..... +..++++-.+++..+-|+..-
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~~~pgV~~v 218 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIGDNDNITAI 218 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHhCCCCeEEE
Confidence 46889999988765 57999999999999999988853333566677777776642 456777777777777776555
Q ss_pred eeeeC
Q 018502 119 VVRVP 123 (355)
Q Consensus 119 ~~~~~ 123 (355)
.|+..
T Consensus 219 ~W~~~ 223 (225)
T PRK15385 219 HWSID 223 (225)
T ss_pred EEEec
Confidence 67643
No 193
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=71.71 E-value=68 Score=32.30 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.9
Q ss_pred cEEEEEEc---CCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 42 ~~ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
-.+++|.| ++++|+.+++.+.|+++|+||.-++|.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 46788985 578999999999999999999999885
No 194
>PRK08210 aspartate kinase I; Reviewed
Probab=71.49 E-value=19 Score=36.47 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
+-.+++|+|. +++|+.+++.+.|+++|+||....+. +.... +-+ ..++..++++.+-++|.+
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s----~~~is----~vv-----~~~~~~~a~~~Lh~~f~~ 402 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADS----HTTIW----VLV-----KEEDMEKAVNALHDAFEL 402 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecC----CCEEE----EEE-----cHHHHHHHHHHHHHHhcC
Confidence 5688999996 78999999999999999999864442 22222 222 235566777777777643
No 195
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=69.24 E-value=15 Score=32.80 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=37.3
Q ss_pred eEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC-----chHHHHHHHCCCCeEEeC
Q 018502 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (355)
||+|-+||.. .+|-.+|..++. ..+.++.+|..+|.-... ..+.++|+++|||++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999753 356666665543 335688888888743332 358999999999998765
No 196
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=69.14 E-value=23 Score=27.55 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeee
Q 018502 52 EVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 52 r~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+|..++|-+.|+++|+|+.-+.|.
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~s 38 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLISTS 38 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEeC
Confidence 4899999999999999999999884
No 197
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=68.85 E-value=40 Score=33.91 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=38.8
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhc-CCCeEEecCCCCCCCCC
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY-GKDVINIHHGLLPSFKG 272 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~-~~~~INiHpslLP~yrG 272 (355)
+.+.++++|+|.+-+|.. -..|.|.+.++ ...+.+|.+..++++.. +..++=+|| ||++|+
T Consensus 219 ~~~a~~~aDvvyt~~w~s-m~~~~~~~~~~-----------~~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~~~ 280 (334)
T PRK12562 219 IAAGVKGADFIYTDVWVS-MGEPKEKWAER-----------IALLRGYQVNSKMMALTGNPQVKFLHC--LPAFHD 280 (334)
T ss_pred HHHHhCCCCEEEEcCccc-cccchhhHHHH-----------HHhccCCcCCHHHHHhhcCCCCEEECC--CCCCCc
Confidence 334556899999888732 00122211111 12345678999999875 567999999 599875
No 198
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=68.47 E-value=18 Score=37.52 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=42.5
Q ss_pred CceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC-----chHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~-----~~v~~~a~~~gIP~~~~~ 188 (355)
..||+|.+||.. .+|-.++..++....+.++.++..||.-.+. ..+.++|+++|||++...
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 468999999873 3666666655422335789889888853232 246788999999998754
No 199
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=67.47 E-value=13 Score=38.55 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=61.6
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCC
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~ 124 (355)
|.|+|.||.||.-.+=..|...|+|.-.+.. |+.. ++....|+. +++.+.+-..++-.--|+
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~-----~IYln~p~l--~~~~fs~L~aei~~I~GV--------- 64 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIG-----RIYLNFPEL--EFESFSSLMAEIRRIPGV--------- 64 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee--cCCC-----eEEEecccc--CHHHHHHHHHHHhcCCCc---------
Confidence 6899999999999999999999999877665 2222 555666753 556665544444322232
Q ss_pred CCCCceEEEEEeCCch-hHHHHHhhhhcC
Q 018502 125 IDPKYKVAVLASKQEH-CLVDFLYGWQEG 152 (355)
Q Consensus 125 ~~~~~riavl~S~~g~-~L~~ll~~~~~~ 152 (355)
...++|-+|-|...| .|.+||.++.+.
T Consensus 65 -~~vr~V~~mPseR~hl~L~aLL~al~~p 92 (511)
T COG3283 65 -TDVRTVPWMPSEREHLALSALLEALPEP 92 (511)
T ss_pred -cceeeecCCcchhHhHHHHHHHHhCCCc
Confidence 345688888776665 688888876443
No 200
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=67.46 E-value=34 Score=33.85 Aligned_cols=57 Identities=9% Similarity=0.223 Sum_probs=35.7
Q ss_pred HhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 201 LVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 201 ~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
.++++|+|.+-.|.+ .. +.-+..-....+-+|.+.+++++..+.. +=+|| ||.+||-
T Consensus 211 a~~~aDvvy~~~w~~-~~------------~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg~ 267 (302)
T PRK14805 211 AIEGHDAIYTDTWIS-MG------------DDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRGV 267 (302)
T ss_pred HHCCCCEEEeeceEe-CC------------CccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCCC
Confidence 345799998877754 00 0000111223445678999999987766 88999 4888763
No 201
>PRK11898 prephenate dehydratase; Provisional
Probab=67.15 E-value=34 Score=33.37 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=41.5
Q ss_pred cEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 42 ~~ILTV~Gp-Dr~GIVA~VS~~La~~g~NIld~~q~id~-~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
+.-|.+.-+ |+||-.+.+=+.++++|+|++.+...-.+ ..+.|.--++++.. .+.+.++++++.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHHHHHH
Confidence 433444444 46999999999999999999998776211 11222223333332 233467777777644
No 202
>PRK09034 aspartate kinase; Reviewed
Probab=66.96 E-value=51 Score=34.24 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=28.0
Q ss_pred EEEEEEc---CCccchHHHHHHHHHhcCCeEeEee
Q 018502 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAAD 74 (355)
Q Consensus 43 ~ILTV~G---pDr~GIVA~VS~~La~~g~NIld~~ 74 (355)
..||+.+ ++++|+.++|.+.|+++|+|+.-++
T Consensus 309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 5777876 6789999999999999999998874
No 203
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=66.84 E-value=10 Score=30.77 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=41.0
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--CCC
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTD 206 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~D 206 (355)
.||++++.|.. -...+..+....-..++++|+...+ ....++++++|+|.+ .. +.+++. ++|
T Consensus 1 i~v~iiG~G~~--g~~~~~~~~~~~~~~~v~~v~d~~~----~~~~~~~~~~~~~~~--~~--------~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSI--GRRHLRALLRSSPDFEVVAVCDPDP----ERAEAFAEKYGIPVY--TD--------LEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHH--HHHHHHHHHHTTTTEEEEEEECSSH----HHHHHHHHHTTSEEE--SS--------HHHHHHHTTES
T ss_pred CEEEEECCcHH--HHHHHHHHHhcCCCcEEEEEEeCCH----HHHHHHHHHhcccch--hH--------HHHHHHhhcCC
Confidence 47888876553 1222222222222478998876542 346777899999933 21 334444 799
Q ss_pred EEEEEeec
Q 018502 207 FLVLARYM 214 (355)
Q Consensus 207 livla~y~ 214 (355)
+++++.-.
T Consensus 65 ~V~I~tp~ 72 (120)
T PF01408_consen 65 AVIIATPP 72 (120)
T ss_dssp EEEEESSG
T ss_pred EEEEecCC
Confidence 99877443
No 204
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=66.67 E-value=25 Score=34.97 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHh--c
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV--Q 203 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l--~ 203 (355)
++.||+|+++|. |.. ++..+.. .-..++++|+...+ +...+++|+++|+|+.+-+ -+++++.- .
T Consensus 3 ~klrVAIIGtG~IGt~---hm~~l~~-~~~velvAVvdid~---es~gla~A~~~Gi~~~~~~------ie~LL~~~~~~ 69 (302)
T PRK08300 3 SKLKVAIIGSGNIGTD---LMIKILR-SEHLEPGAMVGIDP---ESDGLARARRLGVATSAEG------IDGLLAMPEFD 69 (302)
T ss_pred CCCeEEEEcCcHHHHH---HHHHHhc-CCCcEEEEEEeCCh---hhHHHHHHHHcCCCcccCC------HHHHHhCcCCC
Confidence 468999999877 443 2222222 12479998886542 2346678999999985411 23444421 2
Q ss_pred CCCEEEEEe
Q 018502 204 NTDFLVLAR 212 (355)
Q Consensus 204 ~~Dlivla~ 212 (355)
+.|+++.+.
T Consensus 70 dIDiVf~AT 78 (302)
T PRK08300 70 DIDIVFDAT 78 (302)
T ss_pred CCCEEEECC
Confidence 578887654
No 205
>PLN02317 arogenate dehydratase
Probab=66.66 E-value=37 Score=34.95 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=42.3
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCC-------------eEEEEEEEEeCCCCCChHHHHHHHHHH
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKN-------------VFYSRSEFIFDPIKWPREQMDEDFFKL 109 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g-------------~F~Mr~~v~~~~~~~~~~~L~~~l~~l 109 (355)
+++++ +|+||-..++=+.++.+|+|++.+...-.+... .|--.+.+|++. ....+.++++|+++
T Consensus 286 ivfsl--~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg-~~~d~~~~~aL~~L 362 (382)
T PLN02317 286 IVFSL--EEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA-SMADPRAQNALAHL 362 (382)
T ss_pred EEEEc--CCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc-CcCCHHHHHHHHHH
Confidence 44444 899999999999999999999998765322221 133333344433 22235677777776
Q ss_pred Hh
Q 018502 110 SK 111 (355)
Q Consensus 110 a~ 111 (355)
.+
T Consensus 363 ~~ 364 (382)
T PLN02317 363 QE 364 (382)
T ss_pred HH
Confidence 44
No 206
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=65.63 E-value=43 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.9
Q ss_pred EEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~GpDr-~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
..+||.+..- +|..+++-+.|+++|+||-=++++
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 4567887654 899999999999999999999765
No 207
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=64.99 E-value=41 Score=29.55 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=49.2
Q ss_pred eEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-----CchHHHHHHHCCCCeEEe--CCC--CChhH---
Q 018502 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYL--CAK--ENERE--- 195 (355)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~--~~~--~~~~~--- 195 (355)
||+|..||.. +.+..++..+... .+.++.+|..++.-.. ...+.++|+.+|||+..+ ... .....
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 6888999874 3445555443321 1356777776654222 235788999999999876 211 11110
Q ss_pred ------HHHHHHhc--CCCEEEEEeecc
Q 018502 196 ------EELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 196 ------~~~~~~l~--~~Dlivla~y~~ 215 (355)
..+.+... ++|.++++.+..
T Consensus 80 ~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 12333332 689998877654
No 208
>PRK12483 threonine dehydratase; Reviewed
Probab=63.87 E-value=18 Score=38.57 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=35.4
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 33 ~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+-++-.+...+.+.|.=|||||-.+++++.|++. ||++++...
T Consensus 336 ~r~l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 336 ERAELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 3444556677788888899999999999999988 999988764
No 209
>PRK14449 acylphosphatase; Provisional
Probab=63.56 E-value=30 Score=28.01 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..+. .|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~~ 76 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDG----SVEVVAEGDEENIKELINFIKTGLRWARVDNVEER 76 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 567777889999998776554432 78899999999999999999888656777776543
No 210
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=63.50 E-value=1e+02 Score=34.61 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=32.0
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+-.+++|.|. +++|+.+++.+.|+++|+||.-++|..
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss 353 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS 353 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3468999886 678999999999999999999998863
No 211
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.49 E-value=1.3e+02 Score=28.18 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=75.1
Q ss_pred EEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCC
Q 018502 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (355)
Q Consensus 45 LTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~ 124 (355)
+-|+=.+..--...+.+.|.+.|+..+|++.... . --+.++++.++++-
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~---------------~-------a~~~i~~l~~~~~~--------- 64 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEVTYTNP---------------F-------ASEVIKELVELYKD--------- 64 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCc---------------c-------HHHHHHHHHHHcCC---------
Confidence 3344444555667889999999999999876422 1 12345555554421
Q ss_pred CCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc-
Q 018502 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (355)
Q Consensus 125 ~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~- 203 (355)
+++ ++++.|.-.+.+++-.....| + .+++|.. .+..+.++|.++|||+..-. ....|+.+.++
T Consensus 65 ---~p~-~~vGaGTV~~~~~~~~a~~aG---A--~FivsP~---~~~~v~~~~~~~~i~~iPG~----~T~~E~~~A~~~ 128 (213)
T PRK06552 65 ---DPE-VLIGAGTVLDAVTARLAILAG---A--QFIVSPS---FNRETAKICNLYQIPYLPGC----MTVTEIVTALEA 128 (213)
T ss_pred ---CCC-eEEeeeeCCCHHHHHHHHHcC---C--CEEECCC---CCHHHHHHHHHcCCCEECCc----CCHHHHHHHHHc
Confidence 112 335556656666665555555 3 3577766 35689999999999997532 12346666666
Q ss_pred CCCEEEE
Q 018502 204 NTDFLVL 210 (355)
Q Consensus 204 ~~Dlivl 210 (355)
.+|++=+
T Consensus 129 Gad~vkl 135 (213)
T PRK06552 129 GSEIVKL 135 (213)
T ss_pred CCCEEEE
Confidence 8999865
No 212
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=62.34 E-value=17 Score=36.93 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=58.8
Q ss_pred ceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC------------chHHHHHHHCCCCeEEeCCCC----
Q 018502 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLCAKE---- 191 (355)
Q Consensus 129 ~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~------------~~v~~~a~~~gIP~~~~~~~~---- 191 (355)
+||+|..||. .|...+.|-. +.| ++|.+|....-+..+ ..+.+.|+..|||++.++-.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~ 76 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWE 76 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHH-hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 5999999987 4666554433 244 899998765432221 237889999999999887210
Q ss_pred ----------------Ch----h----HHHHHHHhc---CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCccccccc
Q 018502 192 ----------------NE----R----EEELLELVQ---NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN 244 (355)
Q Consensus 192 ----------------~~----~----~~~~~~~l~---~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~ 244 (355)
|. + -..+++... ++|.+.+..|-+.... +-...|.|+.+.-..=++| ||=
T Consensus 77 ~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~--~~~~~~~L~r~~D~~KDQS-YfL 153 (356)
T PF03054_consen 77 EVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD--EKNGRYRLLRGADPKKDQS-YFL 153 (356)
T ss_dssp HTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE--S-TTEEEEEE-SSTTC--G-GGG
T ss_pred HHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee--ccCCceEEEecCCCCCCce-EEE
Confidence 00 0 023444443 5899999999885432 1234455555555444554 444
Q ss_pred ccCChHHHhh
Q 018502 245 MILSGKFLRS 254 (355)
Q Consensus 245 ~il~~~~l~~ 254 (355)
+-|+++.|++
T Consensus 154 ~~l~~~~L~~ 163 (356)
T PF03054_consen 154 SRLPQEQLSR 163 (356)
T ss_dssp TT--HHHHCC
T ss_pred EecCHHHHHh
Confidence 4556666653
No 213
>PRK09181 aspartate kinase; Validated
Probab=62.29 E-value=36 Score=35.80 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=48.4
Q ss_pred cccEEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 40 LTHGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 40 ~~~~ILTV~GpD--r~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
..-.+++++|.. ++|+.+++.+.|++.|+||.-++|... . -.+.+.+ +.+..++++..+-++|.
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s---e-~~Is~vV-------~~~d~~~Av~~lH~~f~ 465 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR---Q-VNMQFVV-------DEDDYEKAICALHEALV 465 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC---c-ceEEEEE-------eHHHHHHHHHHHHHHHh
Confidence 356899999976 899999999999999999999999632 1 1122222 34677888888888874
No 214
>PRK09034 aspartate kinase; Reviewed
Probab=62.24 E-value=40 Score=35.06 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=46.3
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+-.+++++|. +++|+.+++-+.|+++|+||.-++|... . ..+.|-+++ ++..+++..+-++|-
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S--e----~~Is~vV~~-----~d~~~av~~LH~~f~ 449 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS--E----ISIMFGVKN-----EDAEKAVKAIYNAFF 449 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC--c----ceEEEEEcH-----HHHHHHHHHHHHHHh
Confidence 6689999885 7899999999999999999999988532 2 233344443 455666776666663
No 215
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=62.22 E-value=52 Score=32.36 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=32.9
Q ss_pred CceEEEEEeCC-chhH-HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEE
Q 018502 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (355)
Q Consensus 128 ~~riavl~S~~-g~~L-~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~ 186 (355)
|.||+|+++|. |..+ ..++. .. ..++++|+...+ ++...++|+++|+|+.+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d~---es~~la~A~~~Gi~~~~ 53 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGIDP---ESDGLARARELGVKTSA 53 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCCc---ccHHHHHHHHCCCCEEE
Confidence 46999999866 4332 33332 12 478888876432 22345789999999865
No 216
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=61.49 E-value=1.9e+02 Score=30.46 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=97.7
Q ss_pred ccccCCCCccccCCCCCCcccEEEEEEcCCcc---------chHHHHHHHHHhcCCeEe---EeeeeccCCCCeEEEEEE
Q 018502 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEV---------GIVAKLSECIASRGGNIL---AADVFVPEKKNVFYSRSE 89 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr~---------GIVA~VS~~La~~g~NIl---d~~q~id~~~g~F~Mr~~ 89 (355)
|......||==.+++++.+ +.-+|+ +|.. |...++. +-=+.|-.++ .++-| +..|.|..++.
T Consensus 23 ~~~V~v~GEISn~t~~~sg-H~YFtL--KD~~A~i~c~mf~~~~~~l~-f~p~eG~~V~v~G~is~Y--~~rG~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASG-HLYFTL--KDERAQIRCVMFKGNNRRLK-FRPEEGMQVLVRGKISLY--EPRGDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCc-cEEEEE--ccCCceEEEEEEcCcccccC-CCccCCCEEEEEEEEEEE--cCCCceEEEEe
Confidence 5556666666666666665 444443 2332 2222222 2223343333 25555 45788885554
Q ss_pred EEeCCCCCChHHHHHHHHHHHhhh---hhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCC
Q 018502 90 FIFDPIKWPREQMDEDFFKLSKMF---NAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166 (355)
Q Consensus 90 v~~~~~~~~~~~L~~~l~~la~~l---g~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~ 166 (355)
---|. ..-.|..+|+++-++| |+.+..++.+-...+++|+|..|..|..+.|++...+.....++|.. +...-
T Consensus 97 ~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~viv-~pt~V 172 (440)
T COG1570 97 SMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVIV-YPTLV 172 (440)
T ss_pred cCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEE-Eeccc
Confidence 33332 4566777776665544 33332343444455789999999999999999987655433356542 22222
Q ss_pred CCCCc-----hHHHHHHHCC-CCeEEeCCCCCh-------hHHHHHHHhcCCCEEEEEeecc
Q 018502 167 RGPNS-----HVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 167 ~~~~~-----~v~~~a~~~g-IP~~~~~~~~~~-------~~~~~~~~l~~~Dlivla~y~~ 215 (355)
.+.++ ..++.|.+.+ +-+..+..-..+ ++|.+.+.+.++..=|+.+-+|
T Consensus 173 QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGH 234 (440)
T COG1570 173 QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGH 234 (440)
T ss_pred cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeeccc
Confidence 22222 2345555555 666666542221 2456666665444444455555
No 217
>PRK06291 aspartate kinase; Provisional
Probab=61.25 E-value=42 Score=34.93 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=46.6
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
+-.+++++|. +++|+.+++.+.|++.|+||.-++|..- .-. +.+-++ .++..+++..+-++|.+
T Consensus 397 ~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS--e~~----Is~vV~-----~~d~~~av~~Lh~~f~~ 463 (465)
T PRK06291 397 DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS--EVN----ISFVVD-----EEDGERAVKVLHDEFIL 463 (465)
T ss_pred CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc--cCe----EEEEEe-----HHHHHHHHHHHHHHhcc
Confidence 5588999997 6899999999999999999999988632 212 222222 34567777777777653
No 218
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=61.18 E-value=35 Score=35.92 Aligned_cols=79 Identities=9% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCceEEEEEe-CC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCCh-----------
Q 018502 127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE----------- 193 (355)
Q Consensus 127 ~~~riavl~S-~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~----------- 193 (355)
..+||++|+| |+ |..-.+++.+..+ ..+++++-.++. -.-+.+.|+++.-.+..+......
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~N---i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGSN---VTLLADQVRKFKPKLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCC
Confidence 3479999998 55 5666666665322 378888766552 234677788888777665421100
Q ss_pred -------hHHHHHHHhc--CCCEEEEE
Q 018502 194 -------REEELLELVQ--NTDFLVLA 211 (355)
Q Consensus 194 -------~~~~~~~~l~--~~Dlivla 211 (355)
-++.+.+++. ++|++|.|
T Consensus 130 ~~~~vl~G~egl~~la~~~evDiVV~A 156 (454)
T PLN02696 130 DKPEIIPGEEGIVEVARHPEAVTVVTG 156 (454)
T ss_pred CCcEEEECHHHHHHHHcCCCCCEEEEe
Confidence 1245666665 57988866
No 219
>PRK07431 aspartate kinase; Provisional
Probab=60.63 E-value=30 Score=36.99 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=47.4
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
.-.+++++|. .++|+.+++.+.|+++|+|+.-++..- ..+.+-+ +.++.+++...+-++|++
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~--------~~Is~vV-----~~~~~~~av~~Lh~~f~~ 582 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSE--------IRTSCVV-----AEDDGVKALQAVHQAFGL 582 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccc--------eEEEEEE-----eHHHHHHHHHHHHHHhcc
Confidence 4578999996 789999999999999999998877421 1233323 347778888888888865
No 220
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=60.30 E-value=34 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=31.3
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeee
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q 75 (355)
.-.+++++|. +++|+.+++.+.|+++|+||.-+++
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 5578999875 7899999999999999999998875
No 221
>PRK02047 hypothetical protein; Provisional
Probab=60.04 E-value=54 Score=26.77 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=47.8
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeE--eeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILA--ADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld--~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
.+-+.|+|++.++..++|-..+..+.....+ ++.. ...+|.|. ..+.+.+. +.+++.+-+++|.+.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k-~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRAT----SREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEc-cCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 4778999999999999999999998766544 2221 24578887 55556555 468888888777553
No 222
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=59.79 E-value=69 Score=33.02 Aligned_cols=55 Identities=7% Similarity=0.106 Sum_probs=34.8
Q ss_pred CceEEEEEeCC--chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~--g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
++||+|++|.. |..-.+++.+..+ ..+|+++..++. -.-+.+.|++++-.+..+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~---~f~VvaLaa~~n---~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPD---RFRVVALSAGKN---VELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHhCCCEEEEc
Confidence 36999999643 3222233332221 479998876652 2357889999998776664
No 223
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=59.61 E-value=20 Score=31.88 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred eEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-----CchHHHHHHHCCCCeEEeC
Q 018502 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 130 riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (355)
||+|..||.. +.+..++..+... .+.++.+|..++.-.. ...+.++|+++|||++.+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~ 65 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKK 65 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 6888888874 4555555544221 2356777766653211 2467899999999998765
No 224
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=59.32 E-value=2.2e+02 Score=29.86 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCCccccCCCCC----------CcccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 018502 27 FPGEPIESSVSP----------TLTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (355)
Q Consensus 27 ~~~~~~~~~~~~----------~~~~~ILTV~GpD---r~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~ 93 (355)
.||-=|+.+..+ ..+...++|.|+. ++|..++|.+.|+++|+|+.-+.|...+.. +.+.++
T Consensus 282 ~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~------i~~~v~ 355 (447)
T COG0527 282 APGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS------ISFTVP 355 (447)
T ss_pred CCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe------EEEEEc
Confidence 355556555433 2355678888865 458999999999999999999999765322 445555
Q ss_pred CCCCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCch---hHHHHHhhhhcCCCCeEEEEEE
Q 018502 94 PIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVI 162 (355)
Q Consensus 94 ~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~---~L~~ll~~~~~~~l~~eI~~Vi 162 (355)
.. +.+...+.+.+...+..- .+.+ ...--+|++.+.|--+ -...+..++.+. +.+|.++-
T Consensus 356 ~~--~~~~a~~~l~~~~~~~~~---~v~~--~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~--~ini~~is 418 (447)
T COG0527 356 ES--DAPRALRALLEEKLELLA---EVEV--EEGLALVSIVGAGMRSNPGVAARIFQALAEE--NINIIMIS 418 (447)
T ss_pred hh--hHHHHHHHHHHHHhhhcc---eEEe--eCCeeEEEEEccccccCcCHHHHHHHHHHhC--CCcEEEEE
Confidence 42 233333334333221110 1222 2344577877766532 233344444333 34454443
No 225
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=59.26 E-value=31 Score=27.53 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
-++.-...+|.++|+.-|..+..|. +|-+.+.|....+..+++.++.|..++.|..+-.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg----~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDG----SVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTS----EEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred ChhHHHHHHHHHhCCceEEEECCCC----EEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 3677888899999998776554432 7888888888889999999988876688876644
No 226
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.07 E-value=55 Score=31.38 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=46.2
Q ss_pred CCchhHHH--HHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC--hhHHHHHHHhc--CCCEEEE
Q 018502 137 KQEHCLVD--FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ--NTDFLVL 210 (355)
Q Consensus 137 ~~g~~L~~--ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~--~~~~~~~~~l~--~~Dlivl 210 (355)
|.||.... |-+.++.. ..++..++..+. ..+.+..++.|.|+..++...+ ...+++.++++ ++|++|+
T Consensus 13 G~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~~----~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~ 86 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ--GAEVAFACKPLP----GDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIV 86 (279)
T ss_pred cccHHHHHHHHHHHHHHC--CCEEEEEeCCCC----HHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEE
Confidence 44774433 34444321 478888776542 2456788999999988763221 12246777776 7999999
Q ss_pred Eeec
Q 018502 211 ARYM 214 (355)
Q Consensus 211 a~y~ 214 (355)
-+|.
T Consensus 87 D~y~ 90 (279)
T TIGR03590 87 DHYG 90 (279)
T ss_pred cCCC
Confidence 9985
No 227
>PLN02550 threonine dehydratase
Probab=58.35 E-value=20 Score=38.92 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=35.2
Q ss_pred cCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 33 ~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+-++-.+...+.+.|.=|||||-.+++++.|++. ||++++..-
T Consensus 408 ~~~~~~~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 408 ELADVGRQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred HHHHhccCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 3445555666888999999999999999999986 999987753
No 228
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.28 E-value=70 Score=23.34 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=24.9
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.+++++|. +++|+.+++.+.|++ .||.=++|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~ 36 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICYG 36 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEe
Confidence 46889997 789999999999976 555555554
No 229
>PLN02551 aspartokinase
Probab=57.91 E-value=48 Score=35.36 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=45.9
Q ss_pred cccEEEEEEcC--CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 40 LTHGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 40 ~~~~ILTV~Gp--Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
....+|+++|. .++|+.+++-+.|+++|+||.-++|... . - .+.+-++ .++..+++..+-++|
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--e--i--nIS~vV~-----~~d~~~Av~aLH~~F 507 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--K--V--NISLIVN-----DDEAEQCVRALHSAF 507 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--C--c--EEEEEEe-----HHHHHHHHHHHHHHH
Confidence 36689999986 5789999999999999999999998532 1 1 2222222 355677777776766
No 230
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=57.43 E-value=41 Score=33.31 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=66.7
Q ss_pred chhHHHHHhh---hh-cCCCC-eEEEEEEeCCC-CCCCchHHHHHHHCCCCeEEeCCCCChh--------HHHHHHHhcC
Q 018502 139 EHCLVDFLYG---WQ-EGKLP-VEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCAKENER--------EEELLELVQN 204 (355)
Q Consensus 139 g~~L~~ll~~---~~-~~~l~-~eI~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~~~~~~~--------~~~~~~~l~~ 204 (355)
.|..|.|++. ++ .|.+. ..|+. +.+-. ..-..++...+...|+-+..+..+.-.. ..++.+.+++
T Consensus 135 ~HPtQ~LaDl~Ti~e~~G~l~g~kv~~-vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~ 213 (305)
T PRK00856 135 QHPTQALLDLLTIREEFGRLEGLKVAI-VGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIED 213 (305)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCCEEEE-ECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCC
Confidence 4666665554 22 35554 34543 32210 0012356778888998776655332111 1234456668
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCC
Q 018502 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKG 272 (355)
Q Consensus 205 ~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG 272 (355)
+|++..-+|. .|-+.+ . .+.-....+-+|.+..++++..+.+++=+|| ||.+||
T Consensus 214 aDvvyt~~~q------~e~~~~-~-----~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc--LPa~Rg 267 (305)
T PRK00856 214 ADVVMMLRVQ------KERMDG-G-----LLPSYEEYKRSYGLTAERLALAKPDAIVMHP--GPVNRG 267 (305)
T ss_pred CCEEEECCcc------cccccc-c-----chHHHHHHhccCccCHHHHhhcCCCCEEECC--CCCCCC
Confidence 9999776652 221111 0 0111122345789999999988888999999 688875
No 231
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=57.28 E-value=78 Score=29.86 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
..-|+++|+-.. ..|-. ++...+...-+.+|-.|=|.- .+..+..+|..|+||...+.
T Consensus 108 ~~~rlalFvkd~C~~C~~-~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDA-RVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCeEEEEeCCCChHHHH-HHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 457999999633 34533 444445555578888776543 34679999999999987665
No 232
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=57.08 E-value=1.9e+02 Score=29.75 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=31.5
Q ss_pred ccEEEEEEcCCc--cchHHHHHHHHHhcCCeEeEeeeec
Q 018502 41 THGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 41 ~~~ILTV~GpDr--~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
+...++|.|.+- +|+.+++.+.|+++|+||.-++|..
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 446789998665 5999999999999999999998853
No 233
>PRK00341 hypothetical protein; Provisional
Probab=56.87 E-value=69 Score=26.21 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=46.0
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee-ccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-VPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~-id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
+-+.|+|.+.+++.+.|-..+.+|. ...+.+.+ -...+|.|. ..+.+.+. +.+++.+-+++|.+.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRAT 84 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhhC
Confidence 5569999999999999999998776 55443221 234578887 55556555 468888888877543
No 234
>PRK09224 threonine dehydratase; Reviewed
Probab=56.55 E-value=29 Score=36.59 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=45.1
Q ss_pred CCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 34 ~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~-~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
-++-.+.....+.|.=|||||-..++.+.|. +.||++.+..-.. ..+.-++. +++++..-+.+++.++|++
T Consensus 320 r~~~~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vg--ie~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 320 RAELGEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVG--VQLSRGQEERAEIIAQLRA 391 (504)
T ss_pred HHHHhcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEE--EEeCChhhHHHHHHHHHHH
Confidence 3444455677888888999999999999998 7999998875321 11222222 3333311125666666654
No 235
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=56.51 E-value=43 Score=32.18 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--C
Q 018502 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (355)
+++||+|++.|... -...+..++...-..++++|+...+ ....++++++|+|..+ . .+.+++. +
T Consensus 2 ~~irvgiiG~G~~~-~~~~~~~~~~~~~~~~~vav~d~~~----~~a~~~a~~~~~~~~~-~--------~~~~ll~~~~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIA-GKAHLPALAALGGGLELVAVVDRDP----ERAEAFAEEFGIAKAY-T--------DLEELLADPD 67 (342)
T ss_pred CeeEEEEEcccHHH-HHHhHHHHHhCCCceEEEEEecCCH----HHHHHHHHHcCCCccc-C--------CHHHHhcCCC
Confidence 46899999977321 1112222222110157888776543 3578899999999222 2 1344554 4
Q ss_pred CCEEEEEe
Q 018502 205 TDFLVLAR 212 (355)
Q Consensus 205 ~Dlivla~ 212 (355)
+|+|+.+.
T Consensus 68 iD~V~Iat 75 (342)
T COG0673 68 IDAVYIAT 75 (342)
T ss_pred CCEEEEcC
Confidence 78877764
No 236
>PRK14447 acylphosphatase; Provisional
Probab=56.17 E-value=38 Score=27.73 Aligned_cols=60 Identities=8% Similarity=-0.006 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|.++..|- .+|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG---~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~~ 78 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSDG---RTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEVK 78 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCCC---CEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 567777889999998876655431 247788888889999999998887666888776543
No 237
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=56.01 E-value=20 Score=37.80 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=35.8
Q ss_pred ccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee
Q 018502 32 IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 32 ~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
++-++-.+...+.+.|.=|||||-..++.+.|++ .||++.+..
T Consensus 315 ~~r~~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr 357 (499)
T TIGR01124 315 SERCELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYR 357 (499)
T ss_pred HHHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEE
Confidence 3445556677789999999999999999999997 699998775
No 238
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=55.94 E-value=63 Score=35.77 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=48.1
Q ss_pred EEEEEEc-CCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeC-CCCCChHHHHHHHHH
Q 018502 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD-PIKWPREQMDEDFFK 108 (355)
Q Consensus 43 ~ILTV~G-pDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~-~~~~~~~~L~~~l~~ 108 (355)
..+||.. ||++|.+.++...||-+|.+|...+... +|.....+.|... +...+...|++++..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 611 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQDFDPQEFLQAYKS 611 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCCCCChHHHHHHHHH
Confidence 5778887 9999999999999999999999988864 5666544444421 334567888888864
No 239
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=55.87 E-value=34 Score=34.80 Aligned_cols=57 Identities=19% Similarity=0.029 Sum_probs=38.4
Q ss_pred CCceEEEEEeCC-chhH-HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 127 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L-~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
++.||+|..||. .|.+ ..+|.. . ..++.+|..+........+.++|+++|||++.++
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~---G~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd 62 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--Q---GYEIVGVTMRVWGDEPQDARELAARMGIEHYVAD 62 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--c---CCcEEEEEecCcchhHHHHHHHHHHhCCCEEEEe
Confidence 456999999986 3433 334432 2 4678887766422222468899999999998876
No 240
>PRK14423 acylphosphatase; Provisional
Probab=55.00 E-value=40 Score=27.43 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
++.-...+|.++|+.-|.+++.| -+|-+.+.|+...+..+++.+++|...+.|..|-.
T Consensus 20 FR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 20 YRASTRDTARELGVDGWVRNLDD----GRVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred ehHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 56777788999999887665543 36778888888899999999887755577777654
No 241
>PRK14433 acylphosphatase; Provisional
Probab=54.81 E-value=33 Score=27.67 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+.+| -.|-+.+.|+...+++++..+++|...++|..|-..
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSD----GRVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 56777888999999876544433 257888888888999999998877655888776554
No 242
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=54.33 E-value=51 Score=25.71 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=38.0
Q ss_pred eEEEEEeCCchhHHHHHhhhh-cCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEE
Q 018502 130 KVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (355)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~-~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dli 208 (355)
||+|++ .|+--.+|+..+. .|.-+.+|..+.+.+ .....++++++++.+...+ ..+.++++|++
T Consensus 1 kI~iIG--~G~mg~al~~~l~~~g~~~~~v~~~~~r~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~advv 65 (96)
T PF03807_consen 1 KIGIIG--AGNMGSALARGLLASGIKPHEVIIVSSRS----PEKAAELAKEYGVQATADD---------NEEAAQEADVV 65 (96)
T ss_dssp EEEEES--TSHHHHHHHHHHHHTTS-GGEEEEEEESS----HHHHHHHHHHCTTEEESEE---------HHHHHHHTSEE
T ss_pred CEEEEC--CCHHHHHHHHHHHHCCCCceeEEeeccCc----HHHHHHHHHhhccccccCC---------hHHhhccCCEE
Confidence 688885 4444444555543 332346776543433 2357788888885554311 12333379999
Q ss_pred EEEeecc
Q 018502 209 VLARYMQ 215 (355)
Q Consensus 209 vla~y~~ 215 (355)
+++=-.+
T Consensus 66 ilav~p~ 72 (96)
T PF03807_consen 66 ILAVKPQ 72 (96)
T ss_dssp EE-S-GG
T ss_pred EEEECHH
Confidence 9874443
No 243
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.22 E-value=55 Score=31.49 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCceEEEEEeCCchhHHHHHhh-hhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEE
Q 018502 127 PKYKVAVLASKQEHCLVDFLYG-WQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~-~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~ 186 (355)
.|.||++.+||+-+. ||+.+ ++.|+ +.|....+.-. +.++.+.+|.+.|+|...
T Consensus 3 sk~kvaiigsgni~t--dlm~k~lr~g~-~le~~~mvgid---p~sdglaraarlgv~tt~ 57 (310)
T COG4569 3 SKRKVAIIGSGNIGT--DLMIKILRHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH 57 (310)
T ss_pred CcceEEEEccCcccH--HHHHHHHhcCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence 578999999988432 44443 33443 34554444322 346788999999999753
No 244
>PRK14436 acylphosphatase; Provisional
Probab=53.10 E-value=51 Score=26.82 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
-++.-...+|.++|+.-|.++..| -+|-+.+.|+...+.+++..+++|...+.|..|-..
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPD----GSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVK 77 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 357777888999999877665433 368888888888999999988777555777776543
No 245
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=53.05 E-value=93 Score=31.18 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=35.6
Q ss_pred ceEEEEEeCCc-h-hHHHHHhhhhcCCCCeEEEEEEeCCCCC----------C---CchHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG----------P---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~g-~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~----------~---~~~v~~~a~~~gIP~~~~~ 188 (355)
+||+|..||.- | .+..+|.. . ..++.++..++... . ...+.++|+++|||++.++
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~---G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd 70 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--Q---GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVD 70 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEe
Confidence 48999999873 4 33334432 2 35677776654211 0 1257889999999998876
No 246
>PRK14422 acylphosphatase; Provisional
Probab=52.84 E-value=54 Score=26.77 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
++.-...+|.++|+.-|..+.+| -+|-+.+.|....+.+++..++.|...+.|..|-.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 21 FRWWTRSRALELGLTGYAANLAD----GRVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred cHHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 57777888999999876544333 35888889999999999999988855577777654
No 247
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=52.43 E-value=80 Score=33.38 Aligned_cols=67 Identities=15% Similarity=0.001 Sum_probs=42.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
+.-|.+.-+|++|-.+.+=+.++++|+|++.+...-.. .+.+- ..+.++++. ....+.++++.+.+.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk-~~~~e~Y~FfVD~Eg---~~~~l~~aL~~Lk~~ 98 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSK-DGTSKTMDVLVDVEL---FHYGLQEAMDLLKSG 98 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCC-CCCCccEEEEEEEEc---CHHHHHHHHHHHHHh
Confidence 33344444899999999999999999999998775321 12121 222333332 235677777777554
No 248
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=51.73 E-value=53 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=45.5
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHH
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la 110 (355)
+-|+.|--+|+||=...|...|-++++|+--+-.|+... .. ..+.+..+ +.++..++|++.+
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~K--Alli~r~e----d~d~~~~aLed~g 130 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QK--ALLIVRVE----DIDRAIKALEDAG 130 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ce--EEEEEEhh----HHHHHHHHHHHcC
Confidence 357788889999999999999999999999998887543 22 23333333 4566777777654
No 249
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=51.56 E-value=1e+02 Score=29.28 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC-----ch
Q 018502 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SH 172 (355)
Q Consensus 100 ~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~-----~~ 172 (355)
+.+...+....+++++ + ..||+|-+||.. ..|-.+|..+... .++.+|-.||.-... ..
T Consensus 4 ~~~~~~v~~~i~~~~~------~-----~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~ 69 (298)
T COG0037 4 EKLERKVKRAIREFNL------I-----EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAEL 69 (298)
T ss_pred HHHHHHHHHHHHhccc------c-----CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHH
Confidence 3455556655555554 1 579999999873 4555566554322 678788777753321 35
Q ss_pred HHHHHHHCCCCeEEeC
Q 018502 173 VIRFLERHGIPYHYLC 188 (355)
Q Consensus 173 v~~~a~~~gIP~~~~~ 188 (355)
+..+|+..|+|.....
T Consensus 70 ~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 70 VEKLCEKLGIPLIVER 85 (298)
T ss_pred HHHHHHHhCCceEEEE
Confidence 7889999999987654
No 250
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=51.56 E-value=40 Score=29.54 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=45.5
Q ss_pred CceEEEEEeCCc--hhHHH-HHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHh-c
Q 018502 128 KYKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV-Q 203 (355)
Q Consensus 128 ~~riavl~S~~g--~~L~~-ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l-~ 203 (355)
++||.|+..|+. |.+.+ ++.........+.-.++-.++..+.+....+.++++||++--...+ .+.+.. .
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k------~i~~~~~~ 75 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSK------QLTEEDFD 75 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCc------cCchhhhh
Confidence 578988887774 55544 5554433222233234322222223557889999999998632211 122222 3
Q ss_pred CCCEEEEEeecc
Q 018502 204 NTDFLVLARYMQ 215 (355)
Q Consensus 204 ~~Dlivla~y~~ 215 (355)
++|+||...-..
T Consensus 76 ~~DlIitmd~~~ 87 (139)
T COG0394 76 EFDLIITMDESN 87 (139)
T ss_pred hCCEEEEeChHH
Confidence 799999776443
No 251
>PRK00907 hypothetical protein; Provisional
Probab=50.93 E-value=82 Score=25.99 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=46.9
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeee-ccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF-VPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~-id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~ 111 (355)
.+-+.|+|.+++++.++|-..+..|..+.-+.+.. -....|.|. ..+.+... +.++|.+-.++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 47889999999999999999999987654332221 124477876 55556555 46777777777654
No 252
>PRK14431 acylphosphatase; Provisional
Probab=50.33 E-value=51 Score=26.74 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCC-CCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~-l~~eI~~Vis~ 164 (355)
++.....+|.++|+.-|.++.. + .|-+.+.|....+.+++..+++|. ..++|..|...
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~--d---gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNVD--D---YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEECC--C---cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 4566677889999987765432 2 399999999999999999998886 35888776543
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=50.33 E-value=88 Score=28.71 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=44.2
Q ss_pred eEEEEEe--CCc--hhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-CchHHHHHHHCCCCeEEeCCCCChhH--HHHHHHh
Q 018502 130 KVAVLAS--KQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENERE--EELLELV 202 (355)
Q Consensus 130 riavl~S--~~g--~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~~~~~~~~--~~~~~~l 202 (355)
||.+|+- |.| +++.-|-.+.+.. +..|..|-++.-|.. -..+..+|+..|+|++......+..+ .+.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 5555654 444 3555555444333 456666655554422 24688999999999987542211111 1222222
Q ss_pred c--CCCEEEEEeecc
Q 018502 203 Q--NTDFLVLARYMQ 215 (355)
Q Consensus 203 ~--~~Dlivla~y~~ 215 (355)
. +.|+|++-.-++
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 2 589988766654
No 254
>PRK14426 acylphosphatase; Provisional
Probab=50.26 E-value=59 Score=26.40 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcC-CCCeEEEEEEeC
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG-KLPVEITCVISN 164 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~-~l~~eI~~Vis~ 164 (355)
-++.-...+|.++|+.-|..+.+|. .|-+.+.|....+.+++..+++| ...+.|..|-..
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 18 GFRYHTQHEALKLGLTGYAKNLDDG----SVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCC----cEEEEEEeCHHHHHHHHHHHhcCCCCCeEEEEEEEE
Confidence 3577788889999998776544432 58888899888999999998887 334777766543
No 255
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=49.62 E-value=87 Score=25.88 Aligned_cols=55 Identities=13% Similarity=0.220 Sum_probs=36.2
Q ss_pred CceEEEEEeCCchh--HHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCC
Q 018502 128 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK 190 (355)
Q Consensus 128 ~~riavl~S~~g~~--L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~ 190 (355)
+.=+++++|.+|.. +.+.++..++. .+.+.. +|+. .++.++|.++|++...++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~-IT~~-----~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVA-ITSG-----GKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEE-EeCC-----chHHHHHHHcCCcEEECCCC
Confidence 34588899988853 44444444433 366654 4532 24889999999999988743
No 256
>PRK14440 acylphosphatase; Provisional
Probab=49.52 E-value=60 Score=26.33 Aligned_cols=59 Identities=19% Similarity=0.119 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-....|.++|+.-|..+..+ -+|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~~ 76 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPD----GSVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDFS 76 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 57777888999999876443332 278888888888999999998887655777766443
No 257
>PRK14430 acylphosphatase; Provisional
Probab=49.20 E-value=59 Score=26.51 Aligned_cols=59 Identities=17% Similarity=0.016 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -+|-+++.|....+..++..+++|...++|..|-..
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~d----GsVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRAD----GTVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEVG 77 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 46667778899999876544332 368899999999999999998887655888777543
No 258
>PRK14429 acylphosphatase; Provisional
Probab=48.95 E-value=65 Score=26.04 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -+|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCED----GSVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCC----CeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 56777788999999876544332 378888989888899999998887545777776543
No 259
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=48.32 E-value=4.8e+02 Score=30.57 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCCceEEEEEeCC-chhHHHHHhhhhc-------CCCCeEEEEEEeCCCCCCCchHHHHHHHC-CCCeEEeCCCCChhHH
Q 018502 126 DPKYKVAVLASKQ-EHCLVDFLYGWQE-------GKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREE 196 (355)
Q Consensus 126 ~~~~riavl~S~~-g~~L~~ll~~~~~-------~~l~~eI~~Vis~~~~~~~~~v~~~a~~~-gIP~~~~~~~~~~~~~ 196 (355)
.+++||+|+++|. |+...+.|.+... ++-+..+..+|++.. .....++++.+ ++....++- .+.+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~---~~~a~~la~~~~~~~~v~lDv---~D~e 640 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY---LKDAKETVEGIENAEAVQLDV---SDSE 640 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC---HHHHHHHHHhcCCCceEEeec---CCHH
Confidence 3578999999876 5544444433111 010111222344432 12355666665 655444431 1235
Q ss_pred HHHHHhcCCCEEEEEe
Q 018502 197 ELLELVQNTDFLVLAR 212 (355)
Q Consensus 197 ~~~~~l~~~Dlivla~ 212 (355)
++.+++.++|+||.+-
T Consensus 641 ~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 641 SLLKYVSQVDVVISLL 656 (1042)
T ss_pred HHHHhhcCCCEEEECC
Confidence 6777666788877653
No 260
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=48.28 E-value=1.1e+02 Score=32.03 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=41.5
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~-~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
-|.+.-+|++|-.+.|=+.++++|+|++.+...-... .+.|. +-++++... + +.+.+.++++.+..
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~--FFVD~eg~~-~-~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYE--FFVEFDEAS-D-RKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEE--EEEEEecCc-c-HHHHHHHHHHHHhc
Confidence 3344449999999999999999999999987753211 12222 223333211 2 66677777765433
No 261
>PRK14427 acylphosphatase; Provisional
Probab=48.09 E-value=58 Score=26.64 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|.++..+ -.|-+.+.|....+.+++..++.+..++.|..|-..
T Consensus 21 FR~fv~~~A~~lgl~G~V~N~~d----GsVei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 79 (94)
T PRK14427 21 FRYWTMRKAEELGLTGTVRNLDD----GSVALVAEGTGEQVEKLLDWLNSDRAPGRVERVDHT 79 (94)
T ss_pred ChHHHHHHHHHcCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 46667778899999877655433 368888888888999999999887556777776543
No 262
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=47.70 E-value=84 Score=25.89 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
-++......|.++|+.-|.+++.|. +|=+++.|....++.+++.++.|...+.|.-|-.
T Consensus 18 GFR~~~~~~A~~lgl~G~V~N~~DG----sVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 18 GFRYFTRSEALRLGLTGWVKNLDDG----SVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred cHHHHHHHHHHHCCCEEEEEECCCC----eEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 4688888899999999887776653 7888888888779999998888854488877765
No 263
>PRK14441 acylphosphatase; Provisional
Probab=47.33 E-value=60 Score=26.45 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
++.-...+|.++|+.-|+.+.. .-+|-+.+.|....+..++..+++|...++|..+-.
T Consensus 20 FR~~v~~~A~~lgL~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (93)
T PRK14441 20 FRQSAADEARRLGVEGWVRNLP----DGRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEV 77 (93)
T ss_pred chHHHHHHHhhcCcEEEEEECC----CCEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 5667778889999987654433 247888899988899999998887765677777644
No 264
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=46.98 E-value=61 Score=31.68 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=35.7
Q ss_pred CceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCE
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dl 207 (355)
..|++|++.|. +-..+...++. +.++|.. + ++. ..-.+.+++.|..+.. .+++.+.+.++|+
T Consensus 152 g~kvlViG~G~--iG~~~a~~L~~--~Ga~V~v-~-~r~----~~~~~~~~~~G~~~~~--------~~~l~~~l~~aDi 213 (296)
T PRK08306 152 GSNVLVLGFGR--TGMTLARTLKA--LGANVTV-G-ARK----SAHLARITEMGLSPFH--------LSELAEEVGKIDI 213 (296)
T ss_pred CCEEEEECCcH--HHHHHHHHHHH--CCCEEEE-E-ECC----HHHHHHHHHcCCeeec--------HHHHHHHhCCCCE
Confidence 46999998654 33333333321 2466543 3 332 1235667777754322 1245556668999
Q ss_pred EEEE
Q 018502 208 LVLA 211 (355)
Q Consensus 208 ivla 211 (355)
++.+
T Consensus 214 VI~t 217 (296)
T PRK08306 214 IFNT 217 (296)
T ss_pred EEEC
Confidence 9875
No 265
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=46.69 E-value=1.5e+02 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeecc
Q 018502 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~ 215 (355)
..+.+.+.|+++...........+++.+..+ ++|++|+..-.+
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4556677899876543211223356777665 799998876654
No 266
>PRK04998 hypothetical protein; Provisional
Probab=46.68 E-value=1.3e+02 Score=24.30 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=46.0
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeE--eEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNI--LAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NI--ld~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
.+-+.++|+...+.+++|-..+.++...- +.++. ..+|.|. ..+.+.+. +.+++.+-++++.+.-+
T Consensus 15 ~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~---S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~~~ 83 (88)
T PRK04998 15 SFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKP---SSKGNYHSVSITITAT----SIEQVETLYEELAKIEG 83 (88)
T ss_pred CceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEcc---CCCCEEEEEEEEEEEC----CHHHHHHHHHHHhcCCC
Confidence 46679999999999999999998874432 22233 4578887 45555554 46788887777765433
No 267
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=46.09 E-value=77 Score=34.78 Aligned_cols=78 Identities=9% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCceEEEEEeCC-c-hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCc----hHHHHHHHC--CCCeEEeCCCCChhHHHH
Q 018502 127 PKYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERH--GIPYHYLCAKENEREEEL 198 (355)
Q Consensus 127 ~~~riavl~S~~-g-~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~----~v~~~a~~~--gIP~~~~~~~~~~~~~~~ 198 (355)
+..||+|+++|. + +++..|+. .| -.+|.+|+++.. .++. .+.+.|++. +|++..++. ...+.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG--~~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SG--FPRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cC--CCcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 567999999988 4 45555554 35 367878877765 2321 346777774 477776653 234578
Q ss_pred HHHhcCCCEEEEEee
Q 018502 199 LELVQNTDFLVLARY 213 (355)
Q Consensus 199 ~~~l~~~Dlivla~y 213 (355)
.+.++..|+|+++.=
T Consensus 199 ~ev~~~~DiVi~vsD 213 (637)
T TIGR03693 199 HEAFEPADWVLYVSD 213 (637)
T ss_pred HHhhcCCcEEEEECC
Confidence 888888999987754
No 268
>PRK09084 aspartate kinase III; Validated
Probab=45.87 E-value=1.1e+02 Score=31.76 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=30.6
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 018502 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 42 ~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
-..++|.|. +.+|+.++|-+.|+++|+||.-++|.
T Consensus 306 i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss 343 (448)
T PRK09084 306 QTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS 343 (448)
T ss_pred EEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc
Confidence 357889876 68899999999999999999999874
No 269
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=45.82 E-value=1.9e+02 Score=29.93 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhh-----c--ccCcccccccccCChHHHhhcCCC-eEEecCCCCCC
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESL-----S--SKGSLTSYFNMILSGKFLRSYGKD-VINIHHGLLPS 269 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~-----~--~~~~~s~y~~~il~~~~l~~~~~~-~INiHpslLP~ 269 (355)
+.+.+.++|+|.+-.|.. ...|.|-+-+|...+.. + .......+-+|-+..++++..+.+ ++=+|| ||+
T Consensus 256 ~~eav~~aDvVYtd~W~s-m~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHc--LPa 332 (395)
T PRK07200 256 MEEAFKDADIVYPKSWAP-YKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHC--LPA 332 (395)
T ss_pred HHHHhCCCCEEEEcCeee-cccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECC--CCC
Confidence 345566899998887752 11122222122111100 0 001133456678999999987764 999999 488
Q ss_pred CC
Q 018502 270 FK 271 (355)
Q Consensus 270 yr 271 (355)
+|
T Consensus 333 ~r 334 (395)
T PRK07200 333 DI 334 (395)
T ss_pred CC
Confidence 86
No 270
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=45.69 E-value=43 Score=26.14 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=37.5
Q ss_pred CceEEEEEeCCch---hHHHHHhhhhcCCCCeEEEEEEeCCC-CCCCchHHHHHHHCCCCeEEeCC
Q 018502 128 KYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 128 ~~riavl~S~~g~---~L~~ll~~~~~~~l~~eI~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
.+||+|-+|..-. -+.+-|+...... + +++ +|+.-. ++.+.-..++|+++|||+..++.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~-~-~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~a 65 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH-P-DMV-LVHGGAPKGADRIAARWARERGVPVIRFPA 65 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC-C-CEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCc
Confidence 4688888876643 3455555544432 2 233 555443 55455678999999999988763
No 271
>PRK14437 acylphosphatase; Provisional
Probab=45.27 E-value=67 Score=27.21 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
-++.....+|.++|+.-|+.+..| -+|-+.+.|....+.+++..+++|...++|..|-.
T Consensus 37 GFR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~qG~~~~ie~f~~~L~~gP~~a~V~~i~~ 95 (109)
T PRK14437 37 FFRESVRKKAEELQLTGWVKNLSH----GDVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 95 (109)
T ss_pred CchHHHHHHHHHhCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 357777888999999877654433 36888998888899999999887765577776643
No 272
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.01 E-value=34 Score=27.78 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC
Q 018502 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 143 ~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
...+.+++.|+ +..+.|-.+-+..--.++...|+++|||+.++++
T Consensus 19 kqt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 19 KETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45566666664 3333332222211124789999999999999985
No 273
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=44.81 E-value=57 Score=32.72 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=34.4
Q ss_pred eEEEEEeCCc-h-hHHHHHhhhhcCCCCeEEEEEEeCCCCC--------C---CchHHHHHHHCCCCeEEeC
Q 018502 130 KVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRG--------P---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 130 riavl~S~~g-~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~--------~---~~~v~~~a~~~gIP~~~~~ 188 (355)
||++..||.- | .+..+|.. . ..++.+|..++... . ...+.++|+++|||++.++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~---g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--Q---GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--c---CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6889999873 4 34444433 2 35777776544211 0 1257889999999998876
No 274
>PRK14445 acylphosphatase; Provisional
Probab=44.60 E-value=66 Score=26.05 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -+|-+.+.|....+++++..+++|...+.|..|-..
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 19 FRMFIDRAASELNLSGWVRNLPD----GTVEIEAQGSSGMIDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred ChHHHHHHHhhCCCEEEEEECCC----CeEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 56677788899999877554432 368888889889999999998877555788776554
No 275
>PRK14451 acylphosphatase; Provisional
Probab=44.00 E-value=77 Score=25.67 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|.++..| -+|-+.+.|+...+++++..+++|...+.|.-|-..
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (89)
T PRK14451 18 FRASAKKLAEQLMISGWARNLAD----GRVEVFACGKEDKLEEFYTWLQKGPLNARVDVCTRE 76 (89)
T ss_pred chHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 56677788899999877665443 368888888888899999998877555777776543
No 276
>PRK14450 acylphosphatase; Provisional
Probab=43.92 E-value=77 Score=25.60 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -..|-+.+.|....+..++..+++|...+.|.-|-..
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~d---G~~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLAN---GNEVEVVAEGDKDSLLEFLDLLRSGPPRAEVKEVETS 76 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 56777888999999877554433 1237788888888999999988877555777766543
No 277
>PRK14438 acylphosphatase; Provisional
Probab=43.55 E-value=70 Score=25.91 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -.|-+.+.|+...+.+++..+++|...+.|..|...
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14438 18 FRHHTQQTAQRLNVSGWVKNLPN----GSVQGCFEGEETDVAALIDWCHHGPSRARVSGVIVE 76 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCC----CEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 46667788899999877554432 367888888888999999998877655777776543
No 278
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=43.33 E-value=60 Score=30.68 Aligned_cols=83 Identities=16% Similarity=0.030 Sum_probs=43.9
Q ss_pred EEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeC--CCCCCceEEEEEeCCch-hHHHHHhhhhcCCCCeEEEEEEeCC
Q 018502 89 EFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP--DIDPKYKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNH 165 (355)
Q Consensus 89 ~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~--~~~~~~riavl~S~~g~-~L~~ll~~~~~~~l~~eI~~Vis~~ 165 (355)
..+++. +.+.++|.+.++ +.+++. ..|+. ..++-+|||++ +|+|. .+...+. .| ++ ++||..
T Consensus 135 i~~l~~-~~s~~el~~~vk---~~l~~~--~vr~~g~~~~~v~rVav~-~GsG~~~i~~a~~---~g---~D--~~ITGd 199 (241)
T PF01784_consen 135 IGELPE-PMSLEELAERVK---EKLGLP--GVRVVGDPDKKVKRVAVC-GGSGGSFIEEAAE---AG---AD--VYITGD 199 (241)
T ss_dssp EEEEEE-EEEHHHHHHHHH---HHTTSS---EEEESCTTSEEEEEEEE-CSSSGGGHHHHHH---TT---SS--EEEESS
T ss_pred EeecCC-CCCHHHHHHHHH---HHcCCC--cEEecCCCCCcccEEEEE-cccCccHHHHHHh---CC---Ce--EEEEcc
Confidence 344443 245677766665 456653 24543 33445778855 46654 3332222 22 33 355654
Q ss_pred CCCCCchHHHHHHHCCCCeEEeCC
Q 018502 166 DRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 166 ~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
- ..+-...|.++|+.+..+.+
T Consensus 200 ~---~~h~~~~a~~~g~~lI~~gH 220 (241)
T PF01784_consen 200 I---KYHDAQDAKENGINLIDAGH 220 (241)
T ss_dssp -----HHHHHHHHHCTSEEEE--H
T ss_pred C---cHHHHHHHHHCCCEEEEcCC
Confidence 2 24567788999999887765
No 279
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=43.25 E-value=1.5e+02 Score=28.59 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=43.9
Q ss_pred ceEEEEEeCCc-hh--HHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC----Ch-----hH-
Q 018502 129 YKVAVLASKQE-HC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NE-----RE- 195 (355)
Q Consensus 129 ~riavl~S~~g-~~--L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~-----~~- 195 (355)
+||.+.+.+.| |- ..+|...++.. .+++..+..+. . ...+..+++|++++.++... +. ..
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTAR-G----MEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCC-c----hhhhccccCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 68888876565 32 33566655432 47876554432 1 12345556899998876311 10 00
Q ss_pred ------HHHHHHhc--CCCEEEEEeec
Q 018502 196 ------EELLELVQ--NTDFLVLARYM 214 (355)
Q Consensus 196 ------~~~~~~l~--~~Dlivla~y~ 214 (355)
..+.++++ ++|+++..++.
T Consensus 75 ~~~~~~~~~~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 75 KLLKGVLQARKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 13344554 69999987643
No 280
>PRK08210 aspartate kinase I; Reviewed
Probab=43.09 E-value=48 Score=33.57 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.8
Q ss_pred cEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeee
Q 018502 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 42 ~~ILTV~GpDr-~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
-..++|.+... +|+.++|.+.|+++|+||.-++|.
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 35778887666 999999999999999999999887
No 281
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=42.88 E-value=67 Score=27.97 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=36.2
Q ss_pred eEEEEEeCCc-h-hHHHHHhhhhcCCC--CeEEEEEEeCCCCCC-----CchHHHHHHHCCCCeEEeC
Q 018502 130 KVAVLASKQE-H-CLVDFLYGWQEGKL--PVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 130 riavl~S~~g-~-~L~~ll~~~~~~~l--~~eI~~Vis~~~~~~-----~~~v~~~a~~~gIP~~~~~ 188 (355)
||+|..||.. | .+..++..+.. .. +.++.++..++.... ...+.++|+++|+|+..+.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQR-RYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHh-hcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6889999874 3 34444444322 22 357777766653211 1357788999999998765
No 282
>PRK14561 hypothetical protein; Provisional
Probab=42.87 E-value=44 Score=30.58 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=32.0
Q ss_pred ceEEEEEeCC-chh-HHHHHhhhhcCCCCeEEEEEEeCCC-CCCCchHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHD-RGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~-g~~-L~~ll~~~~~~~l~~eI~~Vis~~~-~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
+||+|+.||. .|. +..++... .++.++-.+.. ......+.+.|++.|+|.+.+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 5899999987 343 33333321 23333322221 1112357889999999998876
No 283
>PRK14425 acylphosphatase; Provisional
Probab=42.64 E-value=90 Score=25.53 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.....+|.++|+.-|+.+..| -.|-+.+.|....+.+++..+++|...+.|.-+-..
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~d----GsVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~~ 79 (94)
T PRK14425 21 FRDWTRDEAERLGLTGWVRNESD----GSVTALIAGPDSAISAMIERFRRGPPGASVSGVETE 79 (94)
T ss_pred chHHHHHHHHHhCCEEEEEECCC----CeEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 56777788899999877554432 378888999888999999998877555777766443
No 284
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=41.88 E-value=1.5e+02 Score=29.45 Aligned_cols=93 Identities=9% Similarity=-0.047 Sum_probs=56.7
Q ss_pred CCCCccccCCCCC------CcccEEEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC
Q 018502 26 KFPGEPIESSVSP------TLTHGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP 98 (355)
Q Consensus 26 ~~~~~~~~~~~~~------~~~~~ILTV~Gp-Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~ 98 (355)
++|++|+..|-.. ...+..+.+.|. -.+..++.+.+.++..+.||-. ... ..+...++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~---------- 79 (322)
T PRK11133 15 LWPGLPLSLSGDEVMPLDYRAGRSGWLLYGRGLDKQRLTDFQRKLGAAMVIVAA-WCV----EDYQVVRL---------- 79 (322)
T ss_pred ccCCCCcccccccccccccccccceEEEECCCCCHHHHHHHHHHHhhccceeee-eec----cccceeec----------
Confidence 5788887555422 233455666765 4668899999999999888822 111 11222121
Q ss_pred hHHHHHHHHHHHhhhhhccceeee-CCCCCCceEEEE
Q 018502 99 REQMDEDFFKLSKMFNAMRSVVRV-PDIDPKYKVAVL 134 (355)
Q Consensus 99 ~~~L~~~l~~la~~lg~~~~~~~~-~~~~~~~riavl 134 (355)
..+|+.++..++.+++++. .+.- ....+++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~Lvvf 115 (322)
T PRK11133 80 AGSLTPRATRLAHELGLDV-APLGKIPHLRTPGLLVM 115 (322)
T ss_pred hhhHHHHHHHHHhhcCCcE-EEecCcccccCCCEEEE
Confidence 1469999999999999853 3322 122245677776
No 285
>PRK14444 acylphosphatase; Provisional
Probab=41.62 E-value=95 Score=25.25 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEe
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis 163 (355)
++.....+|.++|+.-|.-+..| -.|-+.+.|....+..+++.+++|...++|..+-.
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 76 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLSD----GRVEAVFEGSRPAVQKMISWCYSGPSHARVERVEV 76 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 57777788999999776433322 35888999999999999999887765678877643
No 286
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=41.59 E-value=1.2e+02 Score=31.52 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=48.2
Q ss_pred eEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCC----CCCCCchHHHHHHHCCCCeEEeC-CCCCh--hHHHHHHHh
Q 018502 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH----DRGPNSHVIRFLERHGIPYHYLC-AKENE--REEELLELV 202 (355)
Q Consensus 130 riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~----~~~~~~~v~~~a~~~gIP~~~~~-~~~~~--~~~~~~~~l 202 (355)
|+.=.++-+-..++++=.++.++ .+-+.-|.++| ..-+-..+.++|+++|+|+.+ + ..... ++..+.+.+
T Consensus 134 ~l~EvG~tn~t~~~d~~~AIne~--ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpviv-D~aSg~~v~~e~~l~~~l 210 (395)
T COG1921 134 KLVEVGTTNRTHLKDYELAINEN--TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIV-DLASGALVDKEPDLREAL 210 (395)
T ss_pred EEEEecccCcCCHHHHHHHhccC--CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEE-ecCCccccccccchhHHH
Confidence 34444433334556654454444 35666777775 112234689999999999986 4 22110 245566777
Q ss_pred c-CCCEEEEEee
Q 018502 203 Q-NTDFLVLARY 213 (355)
Q Consensus 203 ~-~~Dlivla~y 213 (355)
. ++|+++..|=
T Consensus 211 a~GaDLV~~Sgd 222 (395)
T COG1921 211 ALGADLVSFSGD 222 (395)
T ss_pred hcCCCEEEEecc
Confidence 6 8999986653
No 287
>PRK13820 argininosuccinate synthase; Provisional
Probab=41.56 E-value=75 Score=32.80 Aligned_cols=58 Identities=17% Similarity=0.010 Sum_probs=38.8
Q ss_pred CceEEEEEeCCc-h-hHHHHHhhhhcCCCCe-EEEEEEeCCCCCC--CchHHHHHHHCCCCeEEeCC
Q 018502 128 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPV-EITCVISNHDRGP--NSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 128 ~~riavl~S~~g-~-~L~~ll~~~~~~~l~~-eI~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~~ 189 (355)
..||++..||.- | .+..++.. .++. ++.+|..++.... -..+.++|++.|||++.++.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~ 64 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDA 64 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 468999999863 3 44444432 2344 7888877764211 13588999999999998774
No 288
>PRK14452 acylphosphatase; Provisional
Probab=41.45 E-value=97 Score=26.18 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 100 ~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
--++.-...+|.++|+.-|+++..| -.|-+.+.|....++++++.+.+|...+.|..|-..
T Consensus 33 VGFR~~v~~~A~~lgL~G~V~N~~d----GsVeI~~qG~~~~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 33 VGFRASCCRRALDLGLSGWVRNLSD----GSVEVQAEGPPLALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred cChhHHHHHHHHHhCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence 3467777888999999888765543 258888888888999997777777556888776543
No 289
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=41.31 E-value=2.3e+02 Score=29.93 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=17.4
Q ss_pred ccchHHHHHHHHHhcCCeEeEe
Q 018502 52 EVGIVAKLSECIASRGGNILAA 73 (355)
Q Consensus 52 r~GIVA~VS~~La~~g~NIld~ 73 (355)
.+|=+..+.+.|.+.|+.+.-+
T Consensus 173 ~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 173 HRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred CHHHHHHHHHHHHHCCCeEEEE
Confidence 4567788999999999888654
No 290
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=41.24 E-value=98 Score=29.60 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=37.2
Q ss_pred ceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEE
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dli 208 (355)
+||++++.|. --..+...+..+....++++|+.... ....++++.++++.+. ..+++ +.++|++
T Consensus 2 mrIgIIG~G~--iG~~ia~~l~~~~~~~elv~v~d~~~----~~a~~~a~~~~~~~~~-------~~~el---l~~~DvV 65 (265)
T PRK13304 2 LKIGIVGCGA--IASLITKAILSGRINAELYAFYDRNL----EKAENLASKTGAKACL-------SIDEL---VEDVDLV 65 (265)
T ss_pred CEEEEECccH--HHHHHHHHHHcCCCCeEEEEEECCCH----HHHHHHHHhcCCeeEC-------CHHHH---hcCCCEE
Confidence 6899998754 22223333333322578877664331 2355667777765431 11223 2468888
Q ss_pred EEEee
Q 018502 209 VLARY 213 (355)
Q Consensus 209 vla~y 213 (355)
+.+..
T Consensus 66 vi~a~ 70 (265)
T PRK13304 66 VECAS 70 (265)
T ss_pred EEcCC
Confidence 77653
No 291
>PRK14420 acylphosphatase; Provisional
Probab=41.20 E-value=80 Score=25.42 Aligned_cols=59 Identities=17% Similarity=-0.018 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+.. .-+|-+.+.|....+++++..+++|...+.|..+-..
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 75 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRD----DGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTDVHIE 75 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECC----CCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 4666778889999987654332 3478888888888999999999888545777766443
No 292
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=41.06 E-value=1.3e+02 Score=29.94 Aligned_cols=62 Identities=13% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhc--ccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc
Q 018502 199 LELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLS--SKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG 273 (355)
Q Consensus 199 ~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~--~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~ 273 (355)
.+.+.++|++.+-.|.+. +-+ .. ++.+ ...+...+.+|.+.+++++.. +.+=+|| ||++||.
T Consensus 213 ~~av~~aDvvy~d~w~~~-----~~~---~~-~~~~~~~~~r~~~~~~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 213 HKAVSHADYVYTDTWLDM-----EFF---ND-PSYADKKKQRMELMMPYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred HHHhCCCCEEEeeeeEEC-----ccc---Cc-cchHHHHHHHHHhccCCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 344557999988677651 000 00 0000 112334455788999999853 5788899 5999875
No 293
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=40.06 E-value=68 Score=33.12 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=36.5
Q ss_pred CCceEEEEEeCCchhHHHHHh------hhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC
Q 018502 127 PKYKVAVLASKQEHCLVDFLY------GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~------~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
++.-++|.+|++|++.+.+.. .++.+.-......++|.+. .++.++|+++|++++.++.
T Consensus 110 ~~~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~~----s~L~~~a~~~g~~~f~ip~ 174 (410)
T PRK03868 110 LENTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDPD----SKLEQFAKENNIKCFNIPK 174 (410)
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecCC----chHHHhHHhcCCcEEecCC
Confidence 345677888999976554432 1111100233344566543 4699999999999988774
No 294
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=39.81 E-value=63 Score=30.25 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=58.1
Q ss_pred ccEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccce
Q 018502 41 THGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSV 119 (355)
Q Consensus 41 ~~~ILTV~GpDr-~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~ 119 (355)
..+++-++|.-- .++-..+++.|+++|++++-++.- +||. . .-+.++..++++.+.+.+.- .
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl------~Yfw------~--~rtP~~~a~Dl~~~i~~y~~---~ 64 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSL------RYFW------S--ERTPEQTAADLARIIRHYRA---R 64 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechH------HHHh------h--hCCHHHHHHHHHHHHHHHHH---H
Confidence 345566665421 378889999999999999997663 3442 1 33789999999999998864 3
Q ss_pred eeeCCCCCCceEEEEEeCCchhHH
Q 018502 120 VRVPDIDPKYKVAVLASKQEHCLV 143 (355)
Q Consensus 120 ~~~~~~~~~~riavl~S~~g~~L~ 143 (355)
| .+.||++.+...|....
T Consensus 65 w------~~~~vvLiGYSFGADvl 82 (192)
T PF06057_consen 65 W------GRKRVVLIGYSFGADVL 82 (192)
T ss_pred h------CCceEEEEeecCCchhH
Confidence 5 36799999988886433
No 295
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.70 E-value=4.4e+02 Score=27.06 Aligned_cols=192 Identities=11% Similarity=-0.003 Sum_probs=95.0
Q ss_pred EEEEc-CCccchHHHHHHHHHhcCCeEeE-eeee--c----cCCCCeEEEEEE--------------EEeC---CCCCCh
Q 018502 45 HVFHC-PDEVGIVAKLSECIASRGGNILA-ADVF--V----PEKKNVFYSRSE--------------FIFD---PIKWPR 99 (355)
Q Consensus 45 LTV~G-pDr~GIVA~VS~~La~~g~NIld-~~q~--i----d~~~g~F~Mr~~--------------v~~~---~~~~~~ 99 (355)
+-++| ..-+|=+..+.+.|.+.|+++.- .... . ....-.+...+- +.+| ......
T Consensus 175 VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi 254 (421)
T cd01976 175 VNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGP 254 (421)
T ss_pred EEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCH
Confidence 33444 34456677888999999998873 2110 0 000111221110 0110 013567
Q ss_pred HHHHHHHHHHHhhhhhccce-----ee------------eCCCCCCceEEEEEeCCc-hhHHHHHhhhhcCCCCeEEEEE
Q 018502 100 EQMDEDFFKLSKMFNAMRSV-----VR------------VPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCV 161 (355)
Q Consensus 100 ~~L~~~l~~la~~lg~~~~~-----~~------------~~~~~~~~riavl~S~~g-~~L~~ll~~~~~~~l~~eI~~V 161 (355)
+...+-|.++++-+|..... +. .+..=..+|+++++.+.. ..+..++. +|..+|+.+
T Consensus 255 ~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGmevv~~ 329 (421)
T cd01976 255 TKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGMEVVGT 329 (421)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCEEEEE
Confidence 77777777777777641000 00 011113478888863321 22222322 577898876
Q ss_pred EeCCCCCCCchHHHHHHHCC-CCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCc
Q 018502 162 ISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGS 238 (355)
Q Consensus 162 is~~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (355)
-+.... +....+..+..+ -++. +. +.+..++.++++ +||+++-..+.+
T Consensus 330 g~~~~~--~~~~~~~~~~~~~~~~i-~~---~~d~~e~~~~i~~~~pDliig~~~~~----------------------- 380 (421)
T cd01976 330 GYEFAH--RDDYERTEVIPKEGTLL-YD---DVTHYELEEFVKRLKPDLIGSGIKEK----------------------- 380 (421)
T ss_pred EeecCC--HHHHhhHHhhcCCceEE-Ec---CCCHHHHHHHHHHhCCCEEEecCcch-----------------------
Confidence 453111 111222222211 1222 22 123356667765 899997554443
Q ss_pred ccccccccCChHHHhhcCCCeEEecCCCC--C--CCCCchHHHHHHH
Q 018502 239 LTSYFNMILSGKFLRSYGKDVINIHHGLL--P--SFKGGKPAKQAFD 281 (355)
Q Consensus 239 ~s~y~~~il~~~~l~~~~~~~INiHpslL--P--~yrG~~p~~~A~~ 281 (355)
.+-.+...+++.+|+.-+ | .|+|+.-+...+.
T Consensus 381 -----------~~a~k~giP~~~~~~~~~~~~~~Gy~G~~~~~~~i~ 416 (421)
T cd01976 381 -----------YVFQKMGIPFRQMHSWDYSGPYHGFDGFAIFARDMD 416 (421)
T ss_pred -----------hhhhhcCCCeEeCCccccCCCccchhhHHHHHHHHH
Confidence 234456677888887654 6 6888776555544
No 296
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=39.66 E-value=2.4e+02 Score=29.34 Aligned_cols=195 Identities=15% Similarity=0.083 Sum_probs=96.5
Q ss_pred cEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEeeeec------cCCC-CeEEEEE-------------------EEEeCC
Q 018502 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVFV------PEKK-NVFYSRS-------------------EFIFDP 94 (355)
Q Consensus 42 ~~ILTV~GpDr-~GIVA~VS~~La~~g~NIld~~q~i------d~~~-g~F~Mr~-------------------~v~~~~ 94 (355)
+.-+.++|.-. +|=+..+-..|.+.|+++.-.-.-. .... -.+.+.+ .+..+
T Consensus 199 ~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~- 277 (457)
T TIGR01284 199 EYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRLDID- 277 (457)
T ss_pred CCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecc-
Confidence 34455556333 4777888899999999887321100 0000 0111111 00111
Q ss_pred CCCChHHHHHHHHHHHhhhhhccce-------ee--------eCCCCCCceEEEEEeCCc-hhHHHHHhhhhcCCCCeEE
Q 018502 95 IKWPREQMDEDFFKLSKMFNAMRSV-------VR--------VPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEI 158 (355)
Q Consensus 95 ~~~~~~~L~~~l~~la~~lg~~~~~-------~~--------~~~~~~~~riavl~S~~g-~~L~~ll~~~~~~~l~~eI 158 (355)
....++-.+-|.++++-+|+.... .+ ....=..+|+++++.+.- ..+..+|. .++..++
T Consensus 278 -~~G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~----~ElGmev 352 (457)
T TIGR01284 278 -FFGFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLE----DELGMEV 352 (457)
T ss_pred -cCCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHH----HhCCCEE
Confidence 245566666677777776653210 00 111123469988753321 12333332 3567899
Q ss_pred EEEEeCCCCCCCchHHHHHHHCC-CCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcc
Q 018502 159 TCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSS 235 (355)
Q Consensus 159 ~~Vis~~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~ 235 (355)
+.+.+.... .....+..++.. -.+ .++. ....++.+.+. +||+++...+.+
T Consensus 353 v~~~~~~~~--~~~~~~~~~~~~~~~~-~i~d---~~~~e~~~~i~~~~pDllig~~~~~-------------------- 406 (457)
T TIGR01284 353 VAVSTKFGH--EDDYEKIIARVREGTV-IIDD---PNELELEEIIEKYKPDIILTGIREG-------------------- 406 (457)
T ss_pred EEEEEEeCC--HHHHHHHHHhcCCCeE-EEeC---CCHHHHHHHHHhcCCCEEEecCCcc--------------------
Confidence 888764311 123344444432 112 2221 22345666655 899987655554
Q ss_pred cCcccccccccCChHHHhhcCCCeEEecCCC-CC--CCCCchHHHHHHHh
Q 018502 236 KGSLTSYFNMILSGKFLRSYGKDVINIHHGL-LP--SFKGGKPAKQAFDA 282 (355)
Q Consensus 236 ~~~~s~y~~~il~~~~l~~~~~~~INiHpsl-LP--~yrG~~p~~~A~~~ 282 (355)
.+-.+.+.+++++|+.. -| .|+|.--+..-+.+
T Consensus 407 --------------~~a~k~gip~~~~~~~~~~~~~Gy~G~~~l~~~i~n 442 (457)
T TIGR01284 407 --------------ELAKKLGVPYINIHSYHNGPYIGFEGFVNLARDMYN 442 (457)
T ss_pred --------------hhhhhcCCCEEEccccccCCccchhhHHHHHHHHHH
Confidence 23344566778877653 33 57886655444433
No 297
>PRK14428 acylphosphatase; Provisional
Probab=39.60 E-value=1.1e+02 Score=25.39 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|+.+..| -+|-+.+.|....+..++..+++|...+.|..|...
T Consensus 23 FR~fv~~~A~~lgL~G~V~N~~d----GsVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~~~ 81 (97)
T PRK14428 23 FRYFTVTQARRLGVQGWVRNCRD----GSVELEAQGSSDAVQALVEQLAIGPRWSEVSHVAVH 81 (97)
T ss_pred chHHHHHHHHHcCCEEEEEECCC----CEEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEEEE
Confidence 56667778899999877554332 368888999999999999998877555888776554
No 298
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=39.16 E-value=1.1e+02 Score=26.82 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=38.5
Q ss_pred EEEEEeCC--chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCCh---------------
Q 018502 131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--------------- 193 (355)
Q Consensus 131 iavl~S~~--g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~--------------- 193 (355)
|++|+|-. |..--+++.+.. -..+|+++..++. -..+.+.|++++.++..+......
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~---d~f~v~~Lsa~~n---~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~ 74 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP---DKFEVVALSAGSN---IEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIE 74 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT---TTEEEEEEEESST---HHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSE
T ss_pred CEEEcCCcHHHHHHHHHHHhCC---CceEEEEEEcCCC---HHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCE
Confidence 45666432 334444454432 1377777766542 235667777777777665421100
Q ss_pred ---hHHHHHHHhc--CCCEEEEE
Q 018502 194 ---REEELLELVQ--NTDFLVLA 211 (355)
Q Consensus 194 ---~~~~~~~~l~--~~Dlivla 211 (355)
-++.+.++.. ++|++|.|
T Consensus 75 v~~G~~~l~~~~~~~~~D~vv~A 97 (129)
T PF02670_consen 75 VLSGPEGLEELAEEPEVDIVVNA 97 (129)
T ss_dssp EEESHHHHHHHHTHTT-SEEEE-
T ss_pred EEeChHHHHHHhcCCCCCEEEEe
Confidence 0234556665 68988876
No 299
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.02 E-value=1e+02 Score=24.75 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=31.2
Q ss_pred EEEeCCCCCCCchHHHHHHHCCCCeEEeC--CCCChhHHHHHHHhcCCCEEEEE
Q 018502 160 CVISNHDRGPNSHVIRFLERHGIPYHYLC--AKENEREEELLELVQNTDFLVLA 211 (355)
Q Consensus 160 ~Vis~~~~~~~~~v~~~a~~~gIP~~~~~--~~~~~~~~~~~~~l~~~Dlivla 211 (355)
+||..+++ ......+.++++|.-+.... .........+...+.++|+||+.
T Consensus 3 liVGG~~~-~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 3 LIVGGRED-RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred EEEcCCcc-cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 35555432 23467888899998877662 11122223477777799998754
No 300
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.91 E-value=48 Score=33.23 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=34.3
Q ss_pred ceEEEEEeCCch-hHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEE
Q 018502 129 YKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (355)
Q Consensus 129 ~riavl~S~~g~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~ 186 (355)
+||+|.++..|. -|.++.. .--..+..+++..-.+ .-.++|+++|||.+.
T Consensus 5 ksVvV~GtrFGq~Ylaaf~~----~~~~~eLaGiLaqGSe----RSRaLAh~~GVply~ 55 (361)
T COG4693 5 KSVVVCGTRFGQFYLAAFAA----APPRFELAGILAQGSE----RSRALAHRLGVPLYC 55 (361)
T ss_pred ceEEEecchHHHHHHHHhcc----CCCCceeehhhhcccH----HHHHHHHHhCCcccc
Confidence 499999999883 3444332 2123788888876432 347899999999875
No 301
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=38.91 E-value=3.1e+02 Score=29.10 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=22.6
Q ss_pred cEEEEEEcC-----CccchHHHHHHHHHhcCCeEeEe
Q 018502 42 HGIHVFHCP-----DEVGIVAKLSECIASRGGNILAA 73 (355)
Q Consensus 42 ~~ILTV~Gp-----Dr~GIVA~VS~~La~~g~NIld~ 73 (355)
+--+-++|+ .-+|=+..+.+.|.+.|+++.-+
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 334566665 23577888999999999888653
No 302
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=38.35 E-value=2.6e+02 Score=24.58 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=21.3
Q ss_pred CCcccEEEEEEcCCccchHHHHHHHHHhc--CCeEe
Q 018502 38 PTLTHGIHVFHCPDEVGIVAKLSECIASR--GGNIL 71 (355)
Q Consensus 38 ~~~~~~ILTV~GpDr~GIVA~VS~~La~~--g~NIl 71 (355)
+..|+..|++.=.||.=++ .+.+.+.+. |..|.
T Consensus 2 ~~~~~v~lsv~d~dK~~l~-~~a~~l~~ll~Gf~l~ 36 (142)
T PRK05234 2 PARKRIALIAHDHKKDDLV-AWVKAHKDLLEQHELY 36 (142)
T ss_pred CcCcEEEEEEeccchHHHH-HHHHHHHHHhcCCEEE
Confidence 3457778888877777666 445556666 65554
No 303
>PRK14442 acylphosphatase; Provisional
Probab=37.96 E-value=96 Score=25.15 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..| -.|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 19 FRQATREEADRLELDGWVRNLDD----GRVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 56667788899999877655443 268888888888999999988877555788776543
No 304
>PRK14435 acylphosphatase; Provisional
Probab=37.95 E-value=99 Score=25.04 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+.+| -.|-+.+.|....+.+++..+++|...+.|..|-..
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDD----GSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSVE 75 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 56677788999999876543332 357888888888899999988877656778776554
No 305
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=37.89 E-value=52 Score=26.25 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC
Q 018502 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 144 ~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
..+.+++.|+ +..+.+-.|-+..--..+..+|++++||+..+++
T Consensus 18 ~v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 18 QTVKALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3444445563 4544333333211123578899999999998873
No 306
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=37.04 E-value=1.6e+02 Score=30.59 Aligned_cols=54 Identities=6% Similarity=0.119 Sum_probs=35.0
Q ss_pred ceEEEEEeCC--chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~--g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
+||+||+|-. |..-.+++.+..+ ..+|+++..++. -.-+.+.|++++-.+..+.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~n---~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGKN---VALMVEQILEFRPKFVAID 57 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCCC---HHHHHHHHHHcCCCEEEEc
Confidence 6899999744 4444445554322 478888877652 2357788888887776654
No 307
>PRK14432 acylphosphatase; Provisional
Probab=36.98 E-value=1.2e+02 Score=24.73 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEe-CCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S-~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|.++..| -.|-+.+. |....+.+++..+++|...+.|..|-..
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLND----GRVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEKK 76 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECCHHHHHHHHHHHHhCCCccEEEEEEEE
Confidence 56677788999999877655443 25777886 8888899999998888444787776543
No 308
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=36.58 E-value=2e+02 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=22.2
Q ss_pred CceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCC
Q 018502 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 166 (355)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~ 166 (355)
+.||++.+.|. |... +..++. .-..++++|++.++
T Consensus 3 kIRVgIVG~GnIGr~~---a~al~~-~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSV---EKAIQQ-QPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHH---HHHHHh-CCCcEEEEEEcCCc
Confidence 58999999876 4322 222222 12489999988763
No 309
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=36.17 E-value=1.6e+02 Score=28.32 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCC
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (355)
+++||++++.|. |.. +...+..+..++++++|....+ ....++++++|++..+ . ..+++ +.++
T Consensus 5 ~~irIGIIG~G~IG~~---~a~~L~~~~~~~el~aV~dr~~----~~a~~~a~~~g~~~~~-~-----~~eel---l~~~ 68 (271)
T PRK13302 5 PELRVAIAGLGAIGKA---IAQALDRGLPGLTLSAVAVRDP----QRHADFIWGLRRPPPV-V-----PLDQL---ATHA 68 (271)
T ss_pred CeeEEEEECccHHHHH---HHHHHHhcCCCeEEEEEECCCH----HHHHHHHHhcCCCccc-C-----CHHHH---hcCC
Confidence 358999998775 333 2333332222478887765432 2356778888864322 1 11223 3468
Q ss_pred CEEEEEee
Q 018502 206 DFLVLARY 213 (355)
Q Consensus 206 Dlivla~y 213 (355)
|+++.+.-
T Consensus 69 D~Vvi~tp 76 (271)
T PRK13302 69 DIVVEAAP 76 (271)
T ss_pred CEEEECCC
Confidence 88877643
No 310
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=36.09 E-value=1.1e+02 Score=28.11 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=34.5
Q ss_pred CceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCC
Q 018502 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (355)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~D 206 (355)
.+||+|+++|. |+.+..-+. ..+..+.+. .+++++.. .....++++++++... .. ..+.+.++|
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~--~~~~~~~~~-i~~~~~~~--~~~~~~~~~~~~~~~~--~~--------~~~~~~~~D 68 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLL--KTSKEYIEE-IIVSNRSN--VEKLDQLQARYNVSTT--TD--------WKQHVTSVD 68 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHH--hCCCCCcCe-EEEECCCC--HHHHHHHHHHcCcEEe--CC--------hHHHHhcCC
Confidence 47899998766 333322221 123222221 22344421 1245666777776432 11 122345789
Q ss_pred EEEEEe
Q 018502 207 FLVLAR 212 (355)
Q Consensus 207 livla~ 212 (355)
+++++-
T Consensus 69 iViiav 74 (245)
T PRK07634 69 TIVLAM 74 (245)
T ss_pred EEEEec
Confidence 988873
No 311
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=35.96 E-value=85 Score=32.90 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=34.6
Q ss_pred ceEEEEEeCCchhHHHHH------hhhh-cC-CCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC
Q 018502 129 YKVAVLASKQEHCLVDFL------YGWQ-EG-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll------~~~~-~~-~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
.-..+.+|++|++++.+. +.++ .| .....++ ++|+++. ..+.++|+++|++++.++.
T Consensus 133 ~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~v-aiTd~~~---g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 133 KTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLV-FTTDPEK---GKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEE-EEcCCCc---cchHHHHHHcCCcEEeeCC
Confidence 345677899997654432 2121 11 1123443 5676532 2489999999999988774
No 312
>PRK14446 acylphosphatase; Provisional
Probab=35.82 E-value=92 Score=25.29 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.--..+|.++|+.-|.++.+| -.|-+.+.|+...+..++..+++|...++|..|...
T Consensus 17 FR~fv~~~A~~lgl~G~V~N~~d----GsVei~~qG~~~~l~~f~~~l~~gP~~a~V~~v~~~ 75 (88)
T PRK14446 17 YRASTRERAVALGLVGHARNQAD----GSVEVVAAGSAAALEALEAWLWQGPPAATVAAVTRT 75 (88)
T ss_pred EhHHHHHHHeeCCeEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 35556678899999877665443 367788888888999999998877656888877654
No 313
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=35.75 E-value=3e+02 Score=28.72 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=34.1
Q ss_pred CCceEEEEEeCCchhHHHHHhhhh-cCCCCeEEEEEEeCCCCC--------CCchHHHHHHHCCCCeEEeC
Q 018502 127 PKYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRG--------PNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 127 ~~~riavl~S~~g~~L~~ll~~~~-~~~l~~eI~~Vis~~~~~--------~~~~v~~~a~~~gIP~~~~~ 188 (355)
.++|++|+++++. -+.+...++ ++....++++++...+.. ....+.+++++++|....+.
T Consensus 142 ~~rrVLIvGaG~~--g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIA 210 (463)
T PRK10124 142 NKRMVAVAGDLPA--GQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIA 210 (463)
T ss_pred CCCcEEEEECCHH--HHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEe
Confidence 3467888876653 233444433 334568999988654211 01235566677777765554
No 314
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=35.71 E-value=42 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=30.7
Q ss_pred chHHHHHHHCCCCeEEeC-CCCC-----h---------hHHHHHHHhcCCCEEEEEeec
Q 018502 171 SHVIRFLERHGIPYHYLC-AKEN-----E---------REEELLELVQNTDFLVLARYM 214 (355)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~-~~~~-----~---------~~~~~~~~l~~~Dlivla~y~ 214 (355)
..+.++|++.|+|+.... .+.. . ..+...++++++|++++.|..
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 468889999999997655 2210 0 124566777789999999964
No 315
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=35.53 E-value=2e+02 Score=26.83 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=29.5
Q ss_pred EEEeCC-chhHHHHHhhhhcCCCCeEEEEEEe-CCCC--------CCCchHHHHHHHCCCCeEEeCC
Q 018502 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVIS-NHDR--------GPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 133 vl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis-~~~~--------~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
++.||. .|++.. ....+.| .++.++++ ...+ ..-..+...|+..|||...++.
T Consensus 2 vl~SGGkDS~~al-~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~ 64 (218)
T TIGR03679 2 ALYSGGKDSNYAL-YKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIET 64 (218)
T ss_pred eeecCcHHHHHHH-HHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEEC
Confidence 455654 466543 3333444 57754444 2111 0113467889999999887763
No 316
>PRK10126 tyrosine phosphatase; Provisional
Probab=35.36 E-value=1.2e+02 Score=26.38 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=42.1
Q ss_pred ceEEEEEeCCc--hhHHH-HHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCC
Q 018502 129 YKVAVLASKQE--HCLVD-FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (355)
Q Consensus 129 ~riavl~S~~g--~~L~~-ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (355)
+||.|+..|+- |.+.+ ++.... +.+.+.-.++......+.+....+.++++||+......+ .. ++ +.+.++
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr-~l-t~---~~~~~~ 76 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR-QI-SR---RLCRNY 76 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccc-cC-CH---HHhccC
Confidence 57766555542 33433 554432 233344455432222234567889999999997421111 01 11 133479
Q ss_pred CEEEEEeecc
Q 018502 206 DFLVLARYMQ 215 (355)
Q Consensus 206 Dlivla~y~~ 215 (355)
|+|+...-.+
T Consensus 77 DlIl~Md~~~ 86 (147)
T PRK10126 77 DLILTMEKRH 86 (147)
T ss_pred CEEEECCHHH
Confidence 9999765443
No 317
>PRK14421 acylphosphatase; Provisional
Probab=35.35 E-value=1.5e+02 Score=24.61 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..+..+ -.|-+.+.|....+..++..+++|...+.|..|-..
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRD----GSVEALFAGPADAVAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCC----CEEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 56667788899999876544332 378888889888899999888777555788776544
No 318
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=35.03 E-value=3.7e+02 Score=30.38 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=28.9
Q ss_pred EEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeee
Q 018502 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (355)
Q Consensus 43 ~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~ 76 (355)
.++++.|. +++|+.++|-+.|+++|+||.-+++.
T Consensus 323 ~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~ss 359 (861)
T PRK08961 323 VLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSS 359 (861)
T ss_pred EEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcC
Confidence 57788654 58999999999999999999888764
No 319
>PRK06683 hypothetical protein; Provisional
Probab=34.90 E-value=53 Score=26.31 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=29.0
Q ss_pred EEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC
Q 018502 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 134 l~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~ 189 (355)
+++|....+. +++.|+ +..+.|-.+-+..-...+..+|+.++||+..+++
T Consensus 12 ~v~G~~~v~k----aik~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 12 VVVGHKRTLE----AIKNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred EEEcHHHHHH----HHHcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 3445444444 444563 4555444443221124678899999999998763
No 320
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=34.89 E-value=2.1e+02 Score=30.00 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=58.0
Q ss_pred CceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--C
Q 018502 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (355)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (355)
.+|+++++.+. ...+..++. +|..+++++-+.-. ......+..+..+=-...++. .+..++.+++. +
T Consensus 335 GKrv~i~~g~~~~~~~~~~l~-----ELGmevv~~g~~~~--~~~~~~~~~~~~~~~~~i~~~---~d~~el~~~i~~~~ 404 (466)
T TIGR01282 335 GKTVMLYVGGLRPRHVIGAFE-----DLGMEVIGTGYEFA--HNDDYERTTKYMKDGTLIYDD---VTHYEFEEFVEKLK 404 (466)
T ss_pred CCEEEEECCCCcHHHHHHHHH-----HCCCEEEEEeeecC--CHHHHHHHHHhcCCCeEEeeC---CCHHHHHHHHHHhC
Confidence 47888887443 223333332 56788875544210 011233333332211222221 23346666665 8
Q ss_pred CCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCC--C--CCCCchHHHHHH
Q 018502 205 TDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLL--P--SFKGGKPAKQAF 280 (355)
Q Consensus 205 ~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslL--P--~yrG~~p~~~A~ 280 (355)
||+++-....+ .+ -.+...+++++|..-+ | .|+|+--+...+
T Consensus 405 pDl~ig~~~~~------------------------------~~----a~k~gIP~~~~~~~~~~~~~~Gy~G~~~l~~~i 450 (466)
T TIGR01282 405 PDLVGSGIKEK------------------------------YV----FQKMGVPFRQMHSWDYSGPYHGYDGFAIFARDM 450 (466)
T ss_pred CCEEEecCCcc------------------------------ce----eeecCCCccccccccccCcchhHhHHHHHHHHH
Confidence 99998766655 21 2334555667765544 4 688877766666
Q ss_pred HhC
Q 018502 281 DAG 283 (355)
Q Consensus 281 ~~G 283 (355)
.+.
T Consensus 451 ~~~ 453 (466)
T TIGR01282 451 DMA 453 (466)
T ss_pred HHH
Confidence 554
No 321
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=33.68 E-value=1.3e+02 Score=25.36 Aligned_cols=77 Identities=10% Similarity=0.211 Sum_probs=40.9
Q ss_pred EEEeCCchh---H-HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEE
Q 018502 133 VLASKQEHC---L-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (355)
Q Consensus 133 vl~S~~g~~---L-~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dli 208 (355)
+|++....| + +.++.....+++.+.-.++......+.+....+.++++||+...... ... + +.+.+.|+|
T Consensus 2 LFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~--~l~-~---~~~~~~DlI 75 (140)
T smart00226 2 LFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHAS--QLT-S---SDFKNADLV 75 (140)
T ss_pred EEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceec--cCC-H---HHHHhCCEE
Confidence 466655544 3 34554443333333334443222223456788999999999743221 111 1 123479999
Q ss_pred EEEeecc
Q 018502 209 VLARYMQ 215 (355)
Q Consensus 209 vla~y~~ 215 (355)
|...-.+
T Consensus 76 v~m~~~~ 82 (140)
T smart00226 76 LAMDHSH 82 (140)
T ss_pred EEeCHHH
Confidence 9875543
No 322
>PRK14448 acylphosphatase; Provisional
Probab=33.64 E-value=1.7e+02 Score=23.67 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
-++.-...+|.++|+.-|.-+.+| -.|-+.+.|....+.++++.+++|...+.|..|-..
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPD----GSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVIEQ 75 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 367778888999999776433322 357788888888899999998877555777776443
No 323
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=33.14 E-value=1.2e+02 Score=24.08 Aligned_cols=53 Identities=11% Similarity=0.295 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 018502 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (355)
Q Consensus 52 r~GIVA~VS~~La~~g~NIld~~q~i---------d~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~ 107 (355)
...++..+.+.+.++||.|..++.-. ....|.|+ .+.|+.+.. ...+|++.|.
T Consensus 18 ~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~-~~~f~~~~~--~i~el~~~l~ 79 (92)
T PF01250_consen 18 IKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYF-LFNFDASPS--AIKELERKLR 79 (92)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEE-EEEEEESTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEE-EEEEEeCHH--HHHHHHHHhc
Confidence 45778999999999999999987743 12356666 556776642 3455555444
No 324
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=33.07 E-value=1.1e+02 Score=29.02 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=36.2
Q ss_pred CceEEEEEeCC-ch-hHHHHHhhhhcCCCCeEEEEEEeCCCCCC---CchHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~-g~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~~---~~~v~~~a~~~gIP~~~~~ 188 (355)
..||+|..||. .| .+..++... | .++.+|..+++..+ ...+.++|++.|||++.++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~--g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA--G---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh--C---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 35899999987 34 344444332 3 46777766653212 1357889999999998876
No 325
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=33.01 E-value=3.7e+02 Score=27.11 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=42.4
Q ss_pred eCCCCCCceEEEEE---------eCCchhHHHHHhhhhcCCCCeEEEEEEe-CCCCCCCchH-HHHHHHCCCCeEEeCCC
Q 018502 122 VPDIDPKYKVAVLA---------SKQEHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHV-IRFLERHGIPYHYLCAK 190 (355)
Q Consensus 122 ~~~~~~~~riavl~---------S~~g~~L~~ll~~~~~~~l~~eI~~Vis-~~~~~~~~~v-~~~a~~~gIP~~~~~~~ 190 (355)
+++.+.+ |+.||. ++.|+-+.-|..+++.|+ .+..+++ .++...+..+ .....+.|||+.+++.
T Consensus 140 I~dg~~~-~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~---~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~D- 214 (331)
T TIGR00512 140 IKKGVAA-PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR---LEHVYADETRPRLQGARLTAWELVQEGIPATLITD- 214 (331)
T ss_pred hcCCCCC-CceEEeecCCccccccccchHHHHHHHHHHcCC---ceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcc-
Confidence 3444433 667777 233455665666666664 2333333 2322112212 3456788999998762
Q ss_pred CChhHHHHHHHhc--CCCEEEEE
Q 018502 191 ENEREEELLELVQ--NTDFLVLA 211 (355)
Q Consensus 191 ~~~~~~~~~~~l~--~~Dlivla 211 (355)
..+-.++. ++|.+++.
T Consensus 215 -----sav~~~m~~~~vd~VivG 232 (331)
T TIGR00512 215 -----SMAAHLMKHGEVDAVIVG 232 (331)
T ss_pred -----cHHHHHhcccCCCEEEEc
Confidence 12344454 68887653
No 326
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=32.68 E-value=94 Score=24.58 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=44.3
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCC----eEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGG----NILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~----NIld~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
.+-+.++|++..+.+++|...+.++-. .-+..+. ..+|.|. ..+.+.+. +.+++.+-++++.+.
T Consensus 10 ~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~---S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 10 DYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKP---SSKGKYVSVTVSVTVE----SAEQVDAIYRELKAH 78 (85)
T ss_dssp EEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECC---STTSSEEEEEEEEEES----SHHHHHHHHHHHTTS
T ss_pred cceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEec---CCCCeEEEEEEEEEEC----CHHHHHHHHHHhccC
Confidence 478899999999999999998888743 3333332 4578876 44555554 468888877777553
No 327
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=32.56 E-value=1.3e+02 Score=29.07 Aligned_cols=91 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred eeeeCCCCCC----ceEEEEEeCCch---h------HHHHHhhhhcCCCCeEEEEEEeCCCCCCCchH--HHHHHHCC--
Q 018502 119 VVRVPDIDPK----YKVAVLASKQEH---C------LVDFLYGWQEGKLPVEITCVISNHDRGPNSHV--IRFLERHG-- 181 (355)
Q Consensus 119 ~~~~~~~~~~----~riavl~S~~g~---~------L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v--~~~a~~~g-- 181 (355)
.|.+.+.+++ =+|.|++==..+ | |++|..++....+ .+|..+|.|+... .+.. .++..+..
T Consensus 12 ~W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~-~~I~f~vVN~~~~-~s~~~~~~l~~r~~~~ 89 (238)
T PF04592_consen 12 PWKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGL-SNISFMVVNHQGE-HSRLKYWELKRRVSEH 89 (238)
T ss_pred CceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCC-CceEEEEEcCCCc-chhHHHHHHHHhCCCC
Confidence 3666665543 345555533333 3 3344444443332 4888888887542 3333 34445554
Q ss_pred CCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeecc
Q 018502 182 IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 182 IP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~ 215 (355)
||++..+. .+.++-++|. +-|++|.-+.++
T Consensus 90 ipVyqq~~----~q~dvW~~L~G~kdD~~iyDRCGr 121 (238)
T PF04592_consen 90 IPVYQQDE----NQPDVWELLNGSKDDFLIYDRCGR 121 (238)
T ss_pred CceecCCc----cccCHHHHhCCCcCcEEEEeccCc
Confidence 99875432 2346788887 689999999988
No 328
>PRK14443 acylphosphatase; Provisional
Probab=32.41 E-value=1.6e+02 Score=24.13 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCC-CeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l-~~eI~~Vis~ 164 (355)
++.-...+|.++|+.-|..++.| -.|-+.+.|....+..++..++.|.. .++|..|...
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 78 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDD----GSVEIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIY 78 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCC----CEEEEEEECCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 46666778889999876543332 37888888988899999999988865 5888777654
No 329
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.36 E-value=4.3e+02 Score=24.77 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=71.6
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeee
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~ 122 (355)
.+--+.+. .+--...+.+.|.+.|+..+|++.+.+ . -.+.++++.++++
T Consensus 10 liaVlr~~-~~e~a~~~~~al~~~Gi~~iEit~~t~-------------------~---a~~~i~~l~~~~~-------- 58 (204)
T TIGR01182 10 IVPVIRID-DVDDALPLAKALIEGGLRVLEVTLRTP-------------------V---ALDAIRLLRKEVP-------- 58 (204)
T ss_pred EEEEEecC-CHHHHHHHHHHHHHcCCCEEEEeCCCc-------------------c---HHHHHHHHHHHCC--------
Confidence 33334444 445566889999999999999876432 1 1223444433331
Q ss_pred CCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHh
Q 018502 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (355)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (355)
+ +.++.|.-.+.++.-.....| ++ +++|.+- +..+.++|+++|+|+..-. ....|+.+.+
T Consensus 59 -------~-~~vGAGTVl~~~~a~~a~~aG---A~--FivsP~~---~~~v~~~~~~~~i~~iPG~----~TptEi~~A~ 118 (204)
T TIGR01182 59 -------D-ALIGAGTVLNPEQLRQAVDAG---AQ--FIVSPGL---TPELAKHAQDHGIPIIPGV----ATPSEIMLAL 118 (204)
T ss_pred -------C-CEEEEEeCCCHHHHHHHHHcC---CC--EEECCCC---CHHHHHHHHHcCCcEECCC----CCHHHHHHHH
Confidence 1 335555555566655555555 33 5688763 5689999999999987522 1224677777
Q ss_pred c-CCCEEEE
Q 018502 203 Q-NTDFLVL 210 (355)
Q Consensus 203 ~-~~Dlivl 210 (355)
+ .+|++=+
T Consensus 119 ~~Ga~~vKl 127 (204)
T TIGR01182 119 ELGITALKL 127 (204)
T ss_pred HCCCCEEEE
Confidence 6 8898854
No 330
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=32.20 E-value=2.2e+02 Score=23.40 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCChHHHHHHHHHHHhh
Q 018502 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (355)
Q Consensus 54 GIVA~VS~~La~~g~NIld~~q~id~~~g~F~-Mr~~v~~~~~~~~~~~L~~~l~~la~~ 112 (355)
.+...|...+.++|+++..++-.-....+.|. ..+.+++.. +.++|..-|..+...
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g---~~~~L~~~L~~LE~~ 73 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEG---DIEALQAFLYALESG 73 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEe---CHHHHHHHHHHHhcC
Confidence 56788899999999999998776544555555 444455544 689999999888654
No 331
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=31.70 E-value=2.7e+02 Score=27.14 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=54.8
Q ss_pred CceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCE
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dl 207 (355)
.+|++|++.|. +-..+...++. ..++|. +.++.. .-.+.+.+.|..... .+++.+.+.++|+
T Consensus 151 gk~v~IiG~G~--iG~avA~~L~~--~G~~V~--v~~R~~----~~~~~~~~~g~~~~~--------~~~l~~~l~~aDi 212 (287)
T TIGR02853 151 GSNVMVLGFGR--TGMTIARTFSA--LGARVF--VGARSS----ADLARITEMGLIPFP--------LNKLEEKVAEIDI 212 (287)
T ss_pred CCEEEEEcChH--HHHHHHHHHHH--CCCEEE--EEeCCH----HHHHHHHHCCCeeec--------HHHHHHHhccCCE
Confidence 36899988755 33333333322 135554 344421 112334444533211 1245556668999
Q ss_pred EEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCchHHHHHHHhCCcE
Q 018502 208 LVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGGKPAKQAFDAGVKL 286 (355)
Q Consensus 208 ivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~~p~~~A~~~G~~~ 286 (355)
++.+--.. +++.+.++.++.+.+=+=-+--| |..+..+|-..|.+.
T Consensus 213 Vint~P~~------------------------------ii~~~~l~~~k~~aliIDlas~P---g~tdf~~Ak~~G~~a 258 (287)
T TIGR02853 213 VINTIPAL------------------------------VLTADVLSKLPKHAVIIDLASKP---GGTDFEYAKKRGIKA 258 (287)
T ss_pred EEECCChH------------------------------HhCHHHHhcCCCCeEEEEeCcCC---CCCCHHHHHHCCCEE
Confidence 98753111 56667777666544333333323 666666666666543
No 332
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=31.52 E-value=1.1e+02 Score=37.17 Aligned_cols=37 Identities=16% Similarity=0.006 Sum_probs=32.9
Q ss_pred ccEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec
Q 018502 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (355)
Q Consensus 41 ~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i 77 (355)
..-+|.++++|.|=+|..|+..|.++|..|.-+.+-+
T Consensus 16 ~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPV 52 (1528)
T PF05088_consen 16 DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPV 52 (1528)
T ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCc
Confidence 4689999999999999999999999999998866543
No 333
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=31.40 E-value=1.8e+02 Score=27.64 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=43.0
Q ss_pred ceEEEEEeCCchhHH---HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCC----Ch-----h--
Q 018502 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE----NE-----R-- 194 (355)
Q Consensus 129 ~riavl~S~~g~~L~---~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~----~~-----~-- 194 (355)
+||.+.+.+.+..+. +|...+... .+++..+ +... + ...++.+++|++++.++... +. .
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~~~-~---~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GTKR-G---LEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eCCC-c---chhcccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 378888877764443 466665542 3787765 5422 1 12234456899998776311 10 0
Q ss_pred -----HHHHHHHhc--CCCEEEEEe
Q 018502 195 -----EEELLELVQ--NTDFLVLAR 212 (355)
Q Consensus 195 -----~~~~~~~l~--~~Dlivla~ 212 (355)
-..+.++++ ++|++++.+
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~ 98 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFG 98 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 013444454 699998864
No 334
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=31.36 E-value=2.6e+02 Score=22.37 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeC
Q 018502 53 VGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFD 93 (355)
Q Consensus 53 ~GIVA~VS~~La~~g~NIld~~q~id---------~~~g~F~Mr~~v~~~ 93 (355)
.+++..+.+.+.+.|+.|..++.-.. ...|.|+ .+.|+.+
T Consensus 18 ~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~-~~~f~~~ 66 (93)
T TIGR00166 18 KGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYV-LMNFSGE 66 (93)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEE-EEEEEeC
Confidence 57888899999999999998776431 2356555 5556655
No 335
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.00 E-value=1.5e+02 Score=28.15 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=45.9
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeec-cCCCCeEEEEEEEEeCCCCCChHHHHHHHHH
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~i-d~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~ 108 (355)
+-+++--.|=..-+.++.+.+.++||.|...++.. ...++.-.+.+.+.+|.. .++.+-+.|.+
T Consensus 52 ~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~--~~~~~l~~l~~ 116 (262)
T PF14257_consen 52 ADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPAD--KFDSFLDELSE 116 (262)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHH--HHHHHHHHHhc
Confidence 45778888988999999999999999999988851 122455566777888752 34444444443
No 336
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=30.72 E-value=2.8e+02 Score=28.26 Aligned_cols=111 Identities=19% Similarity=0.124 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHhhhhhccce----ee---------eCCCCCCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEE
Q 018502 97 WPREQMDEDFFKLSKMFNAMRSV----VR---------VPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVI 162 (355)
Q Consensus 97 ~~~~~L~~~l~~la~~lg~~~~~----~~---------~~~~~~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vi 162 (355)
...+...+-++++++-+|..... ++ .+..-..+|++|.+... ...+..+|. ++..+++.|+
T Consensus 255 ~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~-----e~G~~v~~v~ 329 (428)
T cd01965 255 IGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLL-----EMGAEPVAAV 329 (428)
T ss_pred cChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHH-----HcCCcceEEE
Confidence 45566666667777666643100 00 00112357888875222 122333443 2357888888
Q ss_pred eCCCCCCCc-hHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeecc
Q 018502 163 SNHDRGPNS-HVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 163 s~~~~~~~~-~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~ 215 (355)
+........ ......+..+++...+.. ....++.+.++ ++|+++-..+.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~d~~el~~~i~~~~pdliig~~~~~ 382 (428)
T cd01965 330 TGTDNPPFEKRMELLASLEGIPAEVVFV---GDLWDLESLAKEEPVDLLIGNSHGR 382 (428)
T ss_pred EcCCCchhHHHHHHhhhhcCCCceEEEC---CCHHHHHHHhhccCCCEEEECchhH
Confidence 866432211 111122234555433332 23456777776 699998665543
No 337
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.63 E-value=4.7e+02 Score=27.92 Aligned_cols=162 Identities=12% Similarity=0.080 Sum_probs=79.7
Q ss_pred EEEEEcC-CccchHHHHHHHHHhcCCeEeEeeeecc-------CCCCeEEEEE-------------------EEEeCCCC
Q 018502 44 IHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVP-------EKKNVFYSRS-------------------EFIFDPIK 96 (355)
Q Consensus 44 ILTV~Gp-Dr~GIVA~VS~~La~~g~NIld~~q~id-------~~~g~F~Mr~-------------------~v~~~~~~ 96 (355)
-+-++|. .-+|=+..+...|.+.|++++-.-.-.. ...-..++.+ .+..+ .
T Consensus 204 ~VNliG~~n~~gD~~eik~lLe~~Gl~v~~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~--~ 281 (513)
T TIGR01861 204 VINYVGEYNIQGDQEVMVDYFQRMGIQVLSTFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDID--G 281 (513)
T ss_pred eEEEeCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecC--c
Confidence 3344443 5567778888888888888873221100 0001111111 01111 2
Q ss_pred CChHHHHHHHHHHHhhhhhccc----------eee--e---CCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEE
Q 018502 97 WPREQMDEDFFKLSKMFNAMRS----------VVR--V---PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCV 161 (355)
Q Consensus 97 ~~~~~L~~~l~~la~~lg~~~~----------~~~--~---~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~V 161 (355)
...++..+-|.++++-+|+... .++ + +..=.-+|+++++.+. -+..+...++ .+|..+++++
T Consensus 282 ~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~--~~~~~~~~l~-~ElGmevv~~ 358 (513)
T TIGR01861 282 FGFEPLAASLRKVAMFFGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGS--KLWHWAHVIE-EEMGLKVVSV 358 (513)
T ss_pred CCHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCch--HHHHHHHHHH-HhCCCEEEEE
Confidence 3566667777777777764210 000 1 0111347888887443 2223332222 2567999999
Q ss_pred EeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeecc
Q 018502 162 ISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 162 is~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~ 215 (355)
.+.... .....+..+..+--...++.. .+-+..+.+. ++|+++..++.+
T Consensus 359 ~t~~~~--~~d~~~~~~~~~~~~~~i~D~---~~~e~~~~l~~~~~Dllig~s~~~ 409 (513)
T TIGR01861 359 YSKFGH--QGDMEKGVARCGEGALAIDDP---NELEGLEAMEMLKPDIILTGKRPG 409 (513)
T ss_pred eccCCC--HHHHHHHHHhCCCCcEEecCC---CHHHHHHHHHhcCCCEEEecCccc
Confidence 885421 112333444444333334321 2223444444 799998776655
No 338
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=30.28 E-value=1.8e+02 Score=24.05 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHhcCCeEeEeeeec---------cCCCCeEEEEEEEEeCC
Q 018502 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDP 94 (355)
Q Consensus 52 r~GIVA~VS~~La~~g~NIld~~q~i---------d~~~g~F~Mr~~v~~~~ 94 (355)
...++..+.+.|.+.||.|.+++.-. ....|.|+ .+.|+.++
T Consensus 19 ~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~-~~~f~~~~ 69 (108)
T PRK00453 19 VKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYV-LLNFEAPP 69 (108)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEE-EEEEEeCH
Confidence 55788999999999999999987643 12466665 56666653
No 339
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=30.20 E-value=2.2e+02 Score=29.89 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.8
Q ss_pred cccEEEEEEcCC---ccchHHHHHHHHHhcCCeEeEeee
Q 018502 40 LTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADV 75 (355)
Q Consensus 40 ~~~~ILTV~GpD---r~GIVA~VS~~La~~g~NIld~~q 75 (355)
.+-++++++|.. .+|+.+++.+.|+++|+||.-++.
T Consensus 381 ~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 381 EGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred CCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 366899999974 578999999999999999999884
No 340
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.93 E-value=1.7e+02 Score=29.76 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCC-----CC-------chHHHHHHHCCCCeEEeC
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-----PN-------SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~-----~~-------~~v~~~a~~~gIP~~~~~ 188 (355)
+..||+|..||. .|...+.|-+- .| .++.+|+...=+. +. .++.+.|+..+||++.+.
T Consensus 4 ~~~~VvvamSgGVDSsVaa~Ll~~-~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 4 KPDRVVVAMSGGVDSSVAARLLAA-RG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred ccceEEEEecCCchHHHHHHHHHh-cC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 457899999876 46555544331 23 6788887643110 11 357899999999999875
No 341
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=29.90 E-value=99 Score=31.16 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=34.7
Q ss_pred ceEEEEEeCCc-hh-HHHHHhhhhcCCCCeEEEEEEeCCC-C----C-----C---CchHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISNHD-R----G-----P---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~g-~~-L~~ll~~~~~~~l~~eI~~Vis~~~-~----~-----~---~~~v~~~a~~~gIP~~~~~ 188 (355)
+||+|..||.- |. +..+|.. .| .+|.+|..++. . . . -..+.++|+..|||++.++
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid 70 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVN 70 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 48999999763 43 3334433 23 58888876421 1 0 0 1245788999999999875
No 342
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.84 E-value=3.1e+02 Score=22.42 Aligned_cols=50 Identities=8% Similarity=0.140 Sum_probs=33.9
Q ss_pred EEEEEcCC-----ccchHHHHHHHHHhcCCeEeEeeeecc---------CCCCeEEEEEEEEeCC
Q 018502 44 IHVFHCPD-----EVGIVAKLSECIASRGGNILAADVFVP---------EKKNVFYSRSEFIFDP 94 (355)
Q Consensus 44 ILTV~GpD-----r~GIVA~VS~~La~~g~NIld~~q~id---------~~~g~F~Mr~~v~~~~ 94 (355)
.+.+.-|| ..+++..+.+.+.++||.|+.++.-.. ...|.|. .+.|+.++
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv-~~~f~~~~ 73 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYI-QMNYSGNG 73 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEE-EEEEEECH
Confidence 34444455 558899999999999999999876432 1244444 66776653
No 343
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.83 E-value=1.5e+02 Score=26.98 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=38.3
Q ss_pred hHHHHHhhhhcCCCCeEEEEEEeCCCCC----CCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc-C-----CCEEEE
Q 018502 141 CLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-N-----TDFLVL 210 (355)
Q Consensus 141 ~L~~ll~~~~~~~l~~eI~~Vis~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~-----~Dlivl 210 (355)
.+.+.++.++.-- +.+=++|+||.... ....+..+.+..|||+.....+.-..-+++++.+. + ++-+++
T Consensus 63 ~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiav 141 (168)
T PF09419_consen 63 EYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTSPSEIAV 141 (168)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCCchhEEE
Confidence 4555566554321 22235688986311 12357778889999987655321122245666664 2 555555
Q ss_pred Ee
Q 018502 211 AR 212 (355)
Q Consensus 211 a~ 212 (355)
.|
T Consensus 142 IG 143 (168)
T PF09419_consen 142 IG 143 (168)
T ss_pred Ec
Confidence 44
No 344
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=29.77 E-value=75 Score=25.56 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=28.0
Q ss_pred EEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 134 l~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
+++|....+.+ ++.|+ +..+.|-++-+..-...+..+|+.++||+.+..
T Consensus 9 lv~G~~~vlka----Ik~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 9 RVVGAKQTLKA----ITNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred EEEchHHHHHH----HHcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 44555444444 44553 455444333321112468889999999997654
No 345
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.65 E-value=1.7e+02 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.7
Q ss_pred CCCCcccEEEEEEcCCc-cchHHHHHHHHHhcCCeEeEe
Q 018502 36 VSPTLTHGIHVFHCPDE-VGIVAKLSECIASRGGNILAA 73 (355)
Q Consensus 36 ~~~~~~~~ILTV~GpDr-~GIVA~VS~~La~~g~NIld~ 73 (355)
||...+.-++.|.|.-. .||=.+++..|++.|.+++-.
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 33444444566888876 799999999999999998743
No 346
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.64 E-value=6.3e+02 Score=25.88 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=91.5
Q ss_pred ccccCCCCccccCCCCCCcccEEEEEEcCCc-------cchHHHHHHHHHhcCCeEeE---eeeeccCCCCeEEEEEEEE
Q 018502 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDE-------VGIVAKLSECIASRGGNILA---ADVFVPEKKNVFYSRSEFI 91 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr-------~GIVA~VS~~La~~g~NIld---~~q~id~~~g~F~Mr~~v~ 91 (355)
|+.+...||=..++.++.+. +=+|+.-.+. .|-...+. +--+.|-.|+= ++-| +..|.|-+.+. +
T Consensus 23 ~~~v~v~gEis~~~~~~sGH-~Yf~Lkd~~a~i~~~~~~~~~~~~~-~~~~~G~~v~v~g~~~~y--~~~g~~ql~v~-~ 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGH-WYFTLKDEIAQIRCVMFKGSARRLK-FKPEEGMKVLVRGKVSLY--EPRGDYQLIVE-E 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCe-EEEEEEcCCcEEEEEEEcChhhcCC-CCCCCCCEEEEEEEEEEE--CCCCCEEEEEE-E
Confidence 77777777766665543333 3334422210 01111111 11233333332 3334 44777776553 2
Q ss_pred eCCCCCChHHHHHHHHHHHhhhh---hccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCC
Q 018502 92 FDPIKWPREQMDEDFFKLSKMFN---AMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168 (355)
Q Consensus 92 ~~~~~~~~~~L~~~l~~la~~lg---~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~ 168 (355)
+... ...+|..+++++-++|. +.+..-+.+-..-++||||..|..|..+.|++.........++|... ...-.|
T Consensus 98 i~~~--g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~-~~~vQG 174 (438)
T PRK00286 98 IEPA--GIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIY-PTLVQG 174 (438)
T ss_pred eeeC--CccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEe-cCcCcC
Confidence 3222 23566666666665543 32222223334457899999999999999999876544322555432 222222
Q ss_pred CCc--h---HHHHHHHCCCCeEEeCCCCCh-------hHHHHHHHhcCCCEEEEEeecc
Q 018502 169 PNS--H---VIRFLERHGIPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 169 ~~~--~---v~~~a~~~gIP~~~~~~~~~~-------~~~~~~~~l~~~Dlivla~y~~ 215 (355)
.++ . .++.+.+.+.-+..+..-++. +++++.+.+.++.+=|+.|-+|
T Consensus 175 ~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGH 233 (438)
T PRK00286 175 EGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGH 233 (438)
T ss_pred ccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccC
Confidence 221 1 233333333455555432221 2466777766444445555555
No 347
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.82 E-value=2.7e+02 Score=27.91 Aligned_cols=69 Identities=12% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCchhHHHHHhhhhcCCCCeEEEEEEeC-CCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEEee
Q 018502 137 KQEHCLVDFLYGWQEGKLPVEITCVISN-HDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (355)
Q Consensus 137 ~~g~~L~~ll~~~~~~~l~~eI~~Vis~-~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla~y 213 (355)
+..+.+..+|....+. ...+..+++. +++..+....+..+++|||+..+.. .++...+.++|.+++..=
T Consensus 127 ~~S~~v~~~l~~A~~~--~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~D------sa~~~~~~~vd~VivGad 196 (301)
T COG1184 127 SFSKTVLEVLKTAADR--GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVD------SAVGAFMSRVDKVLVGAD 196 (301)
T ss_pred cCcHHHHHHHHHhhhc--CCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEec------hHHHHHHHhCCEEEECcc
Confidence 3566666666554332 1235555653 3443345567777889999998762 245555557888866543
No 348
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=28.67 E-value=4.2e+02 Score=26.97 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=55.9
Q ss_pred CCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC----------CchHHHHHHHCCCCeEEeCC-CCC
Q 018502 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP----------NSHVIRFLERHGIPYHYLCA-KEN 192 (355)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~----------~~~v~~~a~~~gIP~~~~~~-~~~ 192 (355)
....++||.|+++.+|-.|.+=+... -| ..++-.+|+-.++... +....++|++.|.=-..+.. ..+
T Consensus 37 ~~ngPKkVLviGaSsGyGLa~RIsaa-FG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS 114 (398)
T COG3007 37 IKNGPKKVLVIGASSGYGLAARISAA-FG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFS 114 (398)
T ss_pred ccCCCceEEEEecCCcccHHHHHHHH-hC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhh
Confidence 34457899999988887776644431 23 2477778876654221 23567899998865443331 111
Q ss_pred -hhHHHHHHHhc----CCCEEEE--Eeeccccchhh
Q 018502 193 -EREEELLELVQ----NTDFLVL--ARYMQPVPLQK 221 (355)
Q Consensus 193 -~~~~~~~~~l~----~~Dlivl--a~y~~~~~~~~ 221 (355)
+-.+.+++.++ +.||+|- |.=+++-|+-+
T Consensus 115 ~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktg 150 (398)
T COG3007 115 DEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHPKTG 150 (398)
T ss_pred HHHHHHHHHHHHHhhccccEEEEeccCccccCCCcc
Confidence 11244566665 6999973 34444444443
No 349
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.49 E-value=4.9e+02 Score=24.31 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=72.3
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeee
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~ 122 (355)
.+-.+.+ +.+--...+++.|.+.|+..+|++.+.. . -.+.++++.++++
T Consensus 6 vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp---------------~-------a~~~I~~l~~~~~-------- 54 (201)
T PRK06015 6 VIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTP---------------A-------ALDAIRAVAAEVE-------- 54 (201)
T ss_pred EEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCc---------------c-------HHHHHHHHHHHCC--------
Confidence 3334444 4455567889999999999999877532 1 1223444433331
Q ss_pred CCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHh
Q 018502 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELV 202 (355)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l 202 (355)
+ +.++.|.-.+.+++-.....| + .+++|.+- +..+.++|+++|+|+..-. ....|+.+..
T Consensus 55 -------~-~~vGAGTVl~~e~a~~ai~aG---A--~FivSP~~---~~~vi~~a~~~~i~~iPG~----~TptEi~~A~ 114 (201)
T PRK06015 55 -------E-AIVGAGTILNAKQFEDAAKAG---S--RFIVSPGT---TQELLAAANDSDVPLLPGA----ATPSEVMALR 114 (201)
T ss_pred -------C-CEEeeEeCcCHHHHHHHHHcC---C--CEEECCCC---CHHHHHHHHHcCCCEeCCC----CCHHHHHHHH
Confidence 1 335555555666665555555 2 36788763 4589999999999997532 1223677777
Q ss_pred c-CCCEEEE
Q 018502 203 Q-NTDFLVL 210 (355)
Q Consensus 203 ~-~~Dlivl 210 (355)
+ .+|++=+
T Consensus 115 ~~Ga~~vK~ 123 (201)
T PRK06015 115 EEGYTVLKF 123 (201)
T ss_pred HCCCCEEEE
Confidence 6 7888843
No 350
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.46 E-value=6.8e+02 Score=25.91 Aligned_cols=184 Identities=13% Similarity=0.152 Sum_probs=96.2
Q ss_pred ccccCCCCccccCCCCCCcccEEEEEEcCCccchHH---------HHHHHHHhcCCeEeE---eeeeccCCCCeEEEEEE
Q 018502 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVA---------KLSECIASRGGNILA---ADVFVPEKKNVFYSRSE 89 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA---------~VS~~La~~g~NIld---~~q~id~~~g~F~Mr~~ 89 (355)
|+.+...||=-.++.++.+ ++=+|+ +|...-|. .+. +--+.|-.++= ++-| +..|.|-+.+.
T Consensus 17 ~~~v~V~GEisn~~~~~sG-H~YFtL--kD~~a~i~~vmf~~~~~~l~-f~~~~G~~V~v~g~v~~y--~~~G~~ql~v~ 90 (432)
T TIGR00237 17 FLQVWIQGEISNFTQPVSG-HWYFTL--KDENAQVRCVMFRGNNNRLK-FRPQNGQQVLVRGGISVY--EPRGDYQIICF 90 (432)
T ss_pred CCcEEEEEEecCCeeCCCc-eEEEEE--EcCCcEEEEEEEcChhhCCC-CCCCCCCEEEEEEEEEEE--CCCCcEEEEEE
Confidence 6677777777777655444 333343 23221110 100 11233444332 3444 44777775554
Q ss_pred EEeCCCCCChHHHHHHHHHHHhhhh---hccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCC
Q 018502 90 FIFDPIKWPREQMDEDFFKLSKMFN---AMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166 (355)
Q Consensus 90 v~~~~~~~~~~~L~~~l~~la~~lg---~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~ 166 (355)
++... ..-+|..+|+++-++|. +.+...+.+-..-++||+|..|..|..+.|++..++.....++|.. +.-.-
T Consensus 91 -~i~~~--G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~-~~~~v 166 (432)
T TIGR00237 91 -EMQPA--GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVI-YPTLV 166 (432)
T ss_pred -EeccC--ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEE-ecccc
Confidence 23322 46677777777766654 3222223344455789999999999999999987665433356653 22222
Q ss_pred CCCCc-----hHHHHHHHCC-CCeEEeCCCCCh-------hHHHHHHHhcCCCEEEEEeecc
Q 018502 167 RGPNS-----HVIRFLERHG-IPYHYLCAKENE-------REEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 167 ~~~~~-----~v~~~a~~~g-IP~~~~~~~~~~-------~~~~~~~~l~~~Dlivla~y~~ 215 (355)
.+..+ ..++.+...+ +-+..+..-+.. +++++.+.+.++-+=|+.|-+|
T Consensus 167 QG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGH 228 (432)
T TIGR00237 167 QGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGH 228 (432)
T ss_pred cCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCc
Confidence 22221 1233333322 555555532221 2456777776555555556666
No 351
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=28.34 E-value=3.7e+02 Score=22.76 Aligned_cols=116 Identities=11% Similarity=-0.030 Sum_probs=58.3
Q ss_pred cCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCCCCCC
Q 018502 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPK 128 (355)
Q Consensus 49 GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~ 128 (355)
|..|.-+.+.+.+.|.++|..+.-..-... + =.+.++-.+.-...-........++++++.
T Consensus 9 ~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-----~-d~vliEGaGg~~~p~~~~~~~~d~~~~~~~------------- 69 (134)
T cd03109 9 DIGKTVATAILARALKEKGYRVAPLKPVQT-----Y-DFVLVEGAGGLCVPLKEDFTNADVAKELNL------------- 69 (134)
T ss_pred CcCHHHHHHHHHHHHHHCCCeEEEEecCCC-----C-CEEEEECCCccccCCCCCCCHHHHHHHhCC-------------
Confidence 344555777888999999988877554322 1 134444332110000001113344444433
Q ss_pred ceEEEEEeCCchhHHHH---HhhhhcCCCCeEEEEEEeCCCCCCCc----hHHHHHHHCCCCeEE
Q 018502 129 YKVAVLASKQEHCLVDF---LYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERHGIPYHY 186 (355)
Q Consensus 129 ~riavl~S~~g~~L~~l---l~~~~~~~l~~eI~~Vis~~~~~~~~----~v~~~a~~~gIP~~~ 186 (355)
++.+.++.+..++.+- ++..+.. +..+.+++.|+...... ....+++..|+|+.-
T Consensus 70 -~vllV~~~~~g~i~~a~~~~~~l~~~--g~~i~gvi~N~~~~~~~~~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 70 -PAILVTSAGLGSINHAFLTIEAARIK--GIILNGVLGNVIVEKEGLATLNVETIERLTGIPVLG 131 (134)
T ss_pred -CEEEEEcCCCCcHhHHHHHHHHHHhc--CCceeEEEEccCCCccchhhhhHHHHHHhcCCCEEE
Confidence 3333333322255432 2223222 46788898887443222 267778888888763
No 352
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=27.63 E-value=1.1e+02 Score=24.63 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=38.6
Q ss_pred EEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhc
Q 018502 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (355)
Q Consensus 46 TV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~ 116 (355)
.+..+|..- ..+.+..+.+.|..|.......+...+.|...+.....-...+..++...|.++|+++|..
T Consensus 29 ~~~f~~~~~-~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 29 WFYFEDEED-AEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEFGGE 98 (104)
T ss_dssp EEEES-HHH-HHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHHT-E
T ss_pred EEEeCCHHH-HHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHhCcE
Confidence 455566554 4667778999999977755422223455666665554432335678888999999999863
No 353
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=1.2e+02 Score=26.65 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=36.0
Q ss_pred EEEEEeCCCCCC------CchHHHHHHHCCCCeEEeC-CCCChhH---HHHHHHhcCCCEEEEEee
Q 018502 158 ITCVISNHDRGP------NSHVIRFLERHGIPYHYLC-AKENERE---EELLELVQNTDFLVLARY 213 (355)
Q Consensus 158 I~~Vis~~~~~~------~~~v~~~a~~~gIP~~~~~-~~~~~~~---~~~~~~l~~~Dlivla~y 213 (355)
...||+|++++. +....+.|++.|++|.++| ......+ +.+.+.+...+-=|++.+
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayC 94 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYC 94 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeee
Confidence 456899987663 3568899999999999998 3323333 344455544555555543
No 354
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=27.43 E-value=3.2e+02 Score=24.45 Aligned_cols=108 Identities=15% Similarity=0.234 Sum_probs=57.8
Q ss_pred EEEeCCch-hHH-HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC-hhHHHHHHHhcCCCEEE
Q 018502 133 VLASKQEH-CLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-EREEELLELVQNTDFLV 209 (355)
Q Consensus 133 vl~S~~g~-~L~-~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~~~~~~~~l~~~Dliv 209 (355)
|..||+-| .-+ .+.+..+...||.+.++-+|+|++..++.+ +..-...=++.. +++.. .+.=....+++++|++
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~-~iLG~e~~~fw~-D~k~a~iNaiRT~~li~~aDvv- 79 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGE-DILGKQPSNFWR-DDAAASINNIRTRKLIEKADVV- 79 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhH-HHhCCCCccccc-cccccchhhHHHHHHHhhCCEE-
Confidence 45567755 333 366667777899999999999976333332 222222222221 22211 1111223445589988
Q ss_pred EEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCC
Q 018502 210 LARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 266 (355)
Q Consensus 210 la~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpsl 266 (355)
+++|+-+ |-. |.--+..-.....+...|-+||--
T Consensus 80 VvrFGek-------YKQ----------------WNaAfDAg~aaAlgKplI~lh~~~ 113 (144)
T TIGR03646 80 IALFGEK-------YKQ----------------WNAAFDAGYAAALGKPLIILRPEE 113 (144)
T ss_pred EEEechH-------HHH----------------HHHHhhHHHHHHcCCCeEEecchh
Confidence 4677641 111 111234455666777888888753
No 355
>PLN02891 IMP cyclohydrolase
Probab=27.31 E-value=90 Score=33.65 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCCccccCCCCCCcccEEEEEEcCCccchHHHHHHHHHhcCCeEeEe
Q 018502 27 FPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAA 73 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~ 73 (355)
-|-.| .+|+|...+++.|+| .||.||+. .++.|.++|..|+..
T Consensus 10 ~~~~~-~~~~~~~~krALISV--sDKtgi~~-fAk~L~~~gveIiST 52 (547)
T PLN02891 10 APAQP-QSSPSSGKKQALISL--SDKTDLAL-LANGLQELGYTIVST 52 (547)
T ss_pred ccccc-cCCCCccccEEEEEE--ecccCHHH-HHHHHHHCCCEEEEc
Confidence 34445 467777789999999 59999875 466677777777664
No 356
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=27.22 E-value=3.2e+02 Score=28.09 Aligned_cols=75 Identities=9% Similarity=-0.020 Sum_probs=43.7
Q ss_pred EEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC--CCCh-hHHHHHHHhcCCCEEEE
Q 018502 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA--KENE-REEELLELVQNTDFLVL 210 (355)
Q Consensus 134 l~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~--~~~~-~~~~~~~~l~~~Dlivl 210 (355)
.+.+.+.....++..+... .+.+++=+.+.. ..=.+.|+..|+++...+. +.+. .-++..++++++|.+|+
T Consensus 271 ~v~~~~~~~~~~~~~L~~~--g~~v~~g~l~~~----d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~ 344 (402)
T PRK09536 271 HVVGGGQPAARAVSRLVAA--GASVSVGPVPEG----DTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVA 344 (402)
T ss_pred EEECCCCcHHHHHHHHHHC--CCeEEEecCcCc----chhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEE
Confidence 3334444445555554333 366655455442 2346889999999986552 2221 12455566668999999
Q ss_pred Eeec
Q 018502 211 ARYM 214 (355)
Q Consensus 211 a~y~ 214 (355)
+++.
T Consensus 345 ~~~~ 348 (402)
T PRK09536 345 AGVA 348 (402)
T ss_pred CCCc
Confidence 8774
No 357
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=27.17 E-value=2.9e+02 Score=21.26 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=23.0
Q ss_pred HHCCCCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeecc
Q 018502 178 ERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (355)
Q Consensus 178 ~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~ 215 (355)
...|+|+...-...+ ...++.+..+ ++|++|+....+
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~dlvvig~~~~ 104 (130)
T cd00293 66 AEAGVKVETVVLEGD-PAEAILEAAEELGADLIVMGSRGR 104 (130)
T ss_pred hcCCCceEEEEecCC-CHHHHHHHHHHcCCCEEEEcCCCC
Confidence 346888765432222 2457777776 799998876544
No 358
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=27.03 E-value=4.5e+02 Score=26.43 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=47.7
Q ss_pred ceEEEEEeCC--chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCC-CC---------hhHH
Q 018502 129 YKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---------EREE 196 (355)
Q Consensus 129 ~riavl~S~~--g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~-~~---------~~~~ 196 (355)
|||.|=+... -|-+..++..++.. +++|. ||.++. ..+.++++.+|+++..+... .+ .|.-
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~--GheV~--it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKR--GHEVL--ITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhC--CCEEE--EEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3555555433 35667777776543 46764 455543 35789999999999988742 22 1233
Q ss_pred HHHHHhc--CCCEEEEEe
Q 018502 197 ELLELVQ--NTDFLVLAR 212 (355)
Q Consensus 197 ~~~~~l~--~~Dlivla~ 212 (355)
++.+++. +||+++..+
T Consensus 74 ~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 74 KLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHhhCCCEEEecC
Confidence 5555555 799998543
No 359
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.97 E-value=3.2e+02 Score=26.17 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred CceEEEEEeCCc-hhH-HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCC
Q 018502 128 KYKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (355)
Q Consensus 128 ~~riavl~S~~g-~~L-~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (355)
.++|.++..|.+ .++ ..+++.+..-..+.++..|+..... ....+.+.++.+. .+.... ..+++.+++..+
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNP-NLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCc-CHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 457777766554 343 3456655432224566665543321 1234556665543 233222 234677888899
Q ss_pred CEEEEEee
Q 018502 206 DFLVLARY 213 (355)
Q Consensus 206 Dlivla~y 213 (355)
|++|+++=
T Consensus 243 Dl~Is~~G 250 (279)
T TIGR03590 243 DLAIGAAG 250 (279)
T ss_pred CEEEECCc
Confidence 99998654
No 360
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.90 E-value=3.4e+02 Score=24.61 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCc-hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHH
Q 018502 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF 176 (355)
Q Consensus 98 ~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g-~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~ 176 (355)
-..++.+.+++.++++|. .+.+..+... ......++.+..+. +.+|+............+.
T Consensus 13 ~~~~~~~~i~~~a~~~g~--------------~~~~~~~~~~~~~~~~~i~~l~~~~----vdgii~~~~~~~~~~~~~~ 74 (269)
T cd06281 13 LLAQLFSGAEDRLRAAGY--------------SLLIANSLNDPERELEILRSFEQRR----MDGIIIAPGDERDPELVDA 74 (269)
T ss_pred cHHHHHHHHHHHHHHcCC--------------EEEEEeCCCChHHHHHHHHHHHHcC----CCEEEEecCCCCcHHHHHH
Confidence 367888888888888764 3444444432 22334444443332 3333322211112346677
Q ss_pred HHHCCCCeEEeC
Q 018502 177 LERHGIPYHYLC 188 (355)
Q Consensus 177 a~~~gIP~~~~~ 188 (355)
++++|||+..++
T Consensus 75 ~~~~~ipvV~i~ 86 (269)
T cd06281 75 LASLDLPIVLLD 86 (269)
T ss_pred HHhCCCCEEEEe
Confidence 888999998776
No 361
>PRK05925 aspartate kinase; Provisional
Probab=26.79 E-value=2.5e+02 Score=29.32 Aligned_cols=61 Identities=7% Similarity=-0.051 Sum_probs=44.3
Q ss_pred ccEEEEEEcCC--ccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 41 THGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 41 ~~~ILTV~GpD--r~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+-.+++++|.. ++|+.+++.+.|++.|+||.-+.|.. . .+.+-++ .++..+++..+-++|-
T Consensus 371 ~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~---~-----~is~vV~-----~~d~~~av~~LH~~f~ 433 (440)
T PRK05925 371 PLALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSD---M-----ALNLVVN-----EELAVAVTELLHNDYV 433 (440)
T ss_pred CEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCC---c-----eEEEEEe-----hHHHHHHHHHHHHHHh
Confidence 66899999973 37899999999999999999988842 1 1222222 3566777777777763
No 362
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.58 E-value=2e+02 Score=26.68 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=38.4
Q ss_pred hHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc----CCCEEEEEe
Q 018502 141 CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLAR 212 (355)
Q Consensus 141 ~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~----~~Dlivla~ 212 (355)
-+.+.+.-++... .. +.|+||. +.+.+..+++..|||+.+-..|-.. ..+.+.++ .++-+|+.|
T Consensus 50 e~~~W~~e~k~~g--i~-v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP~~--~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 50 ELRAWLAELKEAG--IK-VVVVSNN---KESRVARAAEKLGVPFIYRAKKPFG--RAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHhcC--CE-EEEEeCC---CHHHHHhhhhhcCCceeecccCccH--HHHHHHHHHcCCChhHEEEEc
Confidence 4667666554431 23 4477775 3467899999999999875544322 23444443 466666554
No 363
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=26.57 E-value=4.7e+02 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=21.9
Q ss_pred CceEEEEEeCCchhHHHHHhhhh-cCCCCeEEEEEEeCC
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNH 165 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~-~~~l~~eI~~Vis~~ 165 (355)
++|+++++++. ....+++.++ +...+.++++++...
T Consensus 125 ~rrvlIiGag~--~~~~l~~~l~~~~~~g~~vvGfidd~ 161 (456)
T TIGR03022 125 GRPAVIIGAGQ--NAAILYRALQSNPQLGLRPLAVVDTD 161 (456)
T ss_pred CceEEEEeCCH--HHHHHHHHHhhCccCCcEEEEEEeCC
Confidence 46788887654 3334444433 334568999998754
No 364
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.33 E-value=5.3e+02 Score=23.97 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=69.0
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~ 123 (355)
++-|+=.+.+--...+++.|.+.|+.++|++.... .. .+.++.+.+++.
T Consensus 10 iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~-------------------~a---~~~I~~l~~~~p--------- 58 (196)
T PF01081_consen 10 IIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTP-------------------NA---LEAIEALRKEFP--------- 58 (196)
T ss_dssp EEEEETTSSGGGHHHHHHHHHHTT--EEEEETTST-------------------TH---HHHHHHHHHHHT---------
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCc-------------------cH---HHHHHHHHHHCC---------
Confidence 34444455566778999999999999999877521 11 233444444431
Q ss_pred CCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc
Q 018502 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (355)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (355)
. .+++.|.-.+.++.-...+.| + .+++|.+ -+..+.++|.++|||+..-.. ...|+.+.++
T Consensus 59 ----~---~~vGAGTV~~~e~a~~a~~aG---A--~FivSP~---~~~~v~~~~~~~~i~~iPG~~----TptEi~~A~~ 119 (196)
T PF01081_consen 59 ----D---LLVGAGTVLTAEQAEAAIAAG---A--QFIVSPG---FDPEVIEYAREYGIPYIPGVM----TPTEIMQALE 119 (196)
T ss_dssp ----T---SEEEEES--SHHHHHHHHHHT------SEEEESS-----HHHHHHHHHHTSEEEEEES----SHHHHHHHHH
T ss_pred ----C---CeeEEEeccCHHHHHHHHHcC---C--CEEECCC---CCHHHHHHHHHcCCcccCCcC----CHHHHHHHHH
Confidence 1 124555555566665556566 2 3678876 356899999999999986331 1236666666
Q ss_pred -CCCEEEE
Q 018502 204 -NTDFLVL 210 (355)
Q Consensus 204 -~~Dlivl 210 (355)
.+|++=+
T Consensus 120 ~G~~~vK~ 127 (196)
T PF01081_consen 120 AGADIVKL 127 (196)
T ss_dssp TT-SEEEE
T ss_pred CCCCEEEE
Confidence 7888844
No 365
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=26.30 E-value=3e+02 Score=24.81 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=41.2
Q ss_pred EEEEeCCchh--HHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHH-------CCCCeEEeCCCCChhH--H----
Q 018502 132 AVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLER-------HGIPYHYLCAKENERE--E---- 196 (355)
Q Consensus 132 avl~S~~g~~--L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~-------~gIP~~~~~~~~~~~~--~---- 196 (355)
.++.|..||. |..|+..+.. +.......+++..+..+...+.++-+. ..+|-...-.....+. .
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~-~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~ 80 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDN-DRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRA 80 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhh-hcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHH
Confidence 4455555775 4445665522 223455678888765433333434333 2344332111000011 1
Q ss_pred --HHHHHh-c-CCCEEEEEeeccccc
Q 018502 197 --ELLELV-Q-NTDFLVLARYMQPVP 218 (355)
Q Consensus 197 --~~~~~l-~-~~Dlivla~y~~~~~ 218 (355)
..+.++ + +||++++-|-+-=+|
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~vp 106 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCVP 106 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeeH
Confidence 111222 2 799999998876444
No 366
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.24 E-value=6.1e+02 Score=26.00 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=40.4
Q ss_pred CceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-CchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--C
Q 018502 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (355)
Q Consensus 128 ~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (355)
.+|++|.+. ......+...+. ++..+++.|.+...... ...+.++..+++.....+.. .+..++.++++ +
T Consensus 300 gkrv~v~g~--~~~~~~l~~~L~--elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~---~d~~e~~~~l~~~~ 372 (429)
T cd03466 300 GRKAAIYGE--PDFVVAITRFVL--ENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDG---ADFFDIESYAKELK 372 (429)
T ss_pred CCEEEEEcC--HHHHHHHHHHHH--HCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeC---CCHHHHHHHHHhcC
Confidence 468877662 222222222222 35688887777553211 01122334444544444332 12356777766 7
Q ss_pred CCEEEEEeec
Q 018502 205 TDFLVLARYM 214 (355)
Q Consensus 205 ~Dlivla~y~ 214 (355)
+|+++-..+.
T Consensus 373 ~dliiG~s~~ 382 (429)
T cd03466 373 IDVLIGNSYG 382 (429)
T ss_pred CCEEEECchh
Confidence 9999755444
No 367
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.18 E-value=5.7e+02 Score=24.25 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=74.7
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeC
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~ 123 (355)
++-|+=.+.+--...+++.|.+.|+..+|++.... . .. +.++.+.++++-.
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp---------------~---a~----~~i~~l~~~~~~~------- 67 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGD---------------F---AH----EVFAELVKYAAKE------- 67 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---------------c---HH----HHHHHHHHHHHhh-------
Confidence 34444455666778899999999999999877532 1 12 2333333333210
Q ss_pred CCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc
Q 018502 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (355)
Q Consensus 124 ~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (355)
-+ + ++++.|.-.+.++.-.....| + .+++|.+- +..+.++|.++|||+..-. ....|+.+.++
T Consensus 68 --~p--~-~~vGaGTVl~~e~a~~a~~aG---A--~FiVsP~~---~~~v~~~~~~~~i~~iPG~----~TpsEi~~A~~ 130 (222)
T PRK07114 68 --LP--G-MILGVGSIVDAATAALYIQLG---A--NFIVTPLF---NPDIAKVCNRRKVPYSPGC----GSLSEIGYAEE 130 (222)
T ss_pred --CC--C-eEEeeEeCcCHHHHHHHHHcC---C--CEEECCCC---CHHHHHHHHHcCCCEeCCC----CCHHHHHHHHH
Confidence 01 2 235556555666665555555 3 35788763 4579999999999987522 12246777776
Q ss_pred -CCCEEEE
Q 018502 204 -NTDFLVL 210 (355)
Q Consensus 204 -~~Dlivl 210 (355)
++|++=+
T Consensus 131 ~Ga~~vKl 138 (222)
T PRK07114 131 LGCEIVKL 138 (222)
T ss_pred CCCCEEEE
Confidence 7888743
No 368
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=25.83 E-value=87 Score=25.22 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHH---HHHHHhcCCCEEEEEee
Q 018502 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREE---ELLELVQNTDFLVLARY 213 (355)
Q Consensus 142 L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~---~~~~~l~~~Dlivla~y 213 (355)
+.+++.. . +.+++.|.|++. ........|-++|++++. .++.....+ ++.++.++....+..||
T Consensus 54 ~~~ll~~---~--~~D~V~I~tp~~--~h~~~~~~~l~~g~~v~~-EKP~~~~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 54 LEELLAD---E--DVDAVIIATPPS--SHAEIAKKALEAGKHVLV-EKPLALTLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHH---T--TESEEEEESSGG--GHHHHHHHHHHTTSEEEE-ESSSSSSHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHh---h--cCCEEEEecCCc--chHHHHHHHHHcCCEEEE-EcCCcCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 6677764 2 477887777653 245678889999998764 433322333 44444443444445554
No 369
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=25.58 E-value=3.7e+02 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=35.5
Q ss_pred EEEeCCchhH-HHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEE
Q 018502 133 VLASKQEHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (355)
Q Consensus 133 vl~S~~g~~L-~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivl 210 (355)
||.-+..+.. .-|+.+.+.|+ +.+|. |.-+++...+........++|||+..++. ..+...+.++|.+++
T Consensus 119 ILT~~~S~tv~~~l~~a~~~~~-~f~V~-v~EsrP~~~G~~~a~~L~~~gI~vtlI~D------sa~~~~m~~vd~Viv 189 (301)
T TIGR00511 119 VMTHCNSEAALSVIKTAFEQGK-DIEVI-ATETRPRKQGHITAKELRDYGIPVTLIVD------SAVRYFMKEVDHVVV 189 (301)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-cEEEE-EecCCCcchHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 5554444444 44445555554 34443 22233322233455666778999998762 123334445666654
No 370
>PRK13980 NAD synthetase; Provisional
Probab=25.34 E-value=3.1e+02 Score=26.14 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=36.3
Q ss_pred CceEEEEEeCC-chh-HHHHHhhhhcCCCCeEEEEEEeCCCCCC---CchHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~-g~~-L~~ll~~~~~~~l~~eI~~Vis~~~~~~---~~~v~~~a~~~gIP~~~~~ 188 (355)
..+|+|..||. .|. +..++.... | +.++.+|..++...+ ...+.++|++.||+++.++
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~~-~--~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~ 92 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKAL-G--KENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIE 92 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHh-C--ccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 36899999987 343 333443321 2 246777766543211 2357889999999998876
No 371
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=25.27 E-value=4.3e+02 Score=24.99 Aligned_cols=61 Identities=7% Similarity=-0.079 Sum_probs=40.6
Q ss_pred cEEEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHH
Q 018502 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (355)
Q Consensus 42 ~~ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~ 107 (355)
++.+++.|.+.. +..+.+.+.+++..+.+++....... ..+.+++..++ ..+.+++-+++.
T Consensus 144 ~~~~~i~~~~~~--~~~i~~~l~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~L~ 204 (215)
T PRK09977 144 HYHLQLTLVNGN--VVSMLDWFKQQKIKTDLVSLQENEDH--EVVAIDITLHA-TTSIEDLYRLLK 204 (215)
T ss_pred cEEEEEEEcccc--HHHHHHHHHHcCceEEEEEEEecCCC--cEEEEEEEECC-CCCHHHHHHHHh
Confidence 456677776553 57888999999999999987643222 33666777764 345555554444
No 372
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=24.91 E-value=4.3e+02 Score=25.03 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCC---CC-CCchHHHHHHHCCCCeEEeC
Q 018502 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD---RG-PNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~---~~-~~~~v~~~a~~~gIP~~~~~ 188 (355)
+..++...|+.++|+. |...-|++++++.+|. +|++++. +. .++.+.+...++|..+..+.
T Consensus 30 ~~l~~~a~VvlviSnk--~~~~GL~rA~~~gIPt---~vip~k~~a~R~~~d~eL~~~l~e~~~d~v~lA 94 (206)
T KOG3076|consen 30 GSLGPNADVVLVISNK--KGVYGLERAADAGIPT---LVIPHKRFASREKYDNELAEVLLELGTDLVCLA 94 (206)
T ss_pred CCcCCCceEEEEEecc--ccchhhhHHHHCCCCE---EEeccccccccccCcHHHHHHHHHhCCCEEEeh
Confidence 4566789999999987 4445577888777774 7888842 11 13567788888999987764
No 373
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.75 E-value=6.1e+02 Score=24.14 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhc--CCCeEEecCCCCCCC
Q 018502 198 LLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSY--GKDVINIHHGLLPSF 270 (355)
Q Consensus 198 ~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~--~~~~INiHpslLP~y 270 (355)
+.+.+.++|+++.+-.-+ +..+.+.+-+ +.+......-+...-+.+.+.++.+.. +.+++++|+-- |.+
T Consensus 78 ~~~a~~~aDlVieavpe~-~~~k~~~~~~--l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~-p~~ 148 (287)
T PRK08293 78 LAEAVKDADLVIEAVPED-PEIKGDFYEE--LAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFAN-EIW 148 (287)
T ss_pred HHHHhcCCCEEEEeccCC-HHHHHHHHHH--HHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCC-CCC
Confidence 334456899999886532 1122222222 223333444444555666665666643 45789999853 444
No 374
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=24.57 E-value=93 Score=25.59 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=26.8
Q ss_pred EEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC--CchHHHHHHHCCCCeEEeC
Q 018502 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 134 l~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~--~~~v~~~a~~~gIP~~~~~ 188 (355)
+++|...++.+ ++.|+ +..+ |-..+-++ ...+..+|++++||++.+.
T Consensus 17 l~~G~~~v~ka----i~~gk--aklV--iiA~D~~~~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 17 VILGSKRTIKA----IKLGK--AKLV--IVASNCPKDIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred EEEcHHHHHHH----HHcCC--ceEE--EEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45555444444 44453 4443 33333222 2468899999999987653
No 375
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=24.45 E-value=3.2e+02 Score=24.59 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-C-chH
Q 018502 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-N-SHV 173 (355)
Q Consensus 96 ~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~-~~v 173 (355)
..+.+++.+.+.+.++++|+ .+.++=|....-|.|.|..... +..+||-|+-.-. . ..+
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~--------------~~~~~QSN~EGelId~i~~a~~-----~~dgiIINpga~THtSiAl 85 (146)
T PRK13015 25 HETLADVEALCRAAAEALGL--------------EVEFRQSNHEGELIDWIHEARG-----DVAGIVINPGAYTHTSVAI 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC--------------EEEEEeeCcHHHHHHHHHHhhh-----cCCEEEEcchHHhhhHHHH
Confidence 34789999999999998875 5778888888777777665321 2456888863211 1 245
Q ss_pred HHHHHHCCCCeEEeC-CCCChhHHHHHH--HhcCCCEEEEEeecc
Q 018502 174 IRFLERHGIPYHYLC-AKENEREEELLE--LVQNTDFLVLARYMQ 215 (355)
Q Consensus 174 ~~~a~~~gIP~~~~~-~~~~~~~~~~~~--~l~~~Dlivla~y~~ 215 (355)
.+..+..++|+..+- +....| |++++ .+...=..+.+|++-
T Consensus 86 ~DAl~~~~~P~VEVHiSNi~aR-E~fR~~S~is~~~~G~I~G~G~ 129 (146)
T PRK13015 86 RDALAALELPVIEVHISNVHAR-EAFRHHSYVSAIADGVICGLGT 129 (146)
T ss_pred HHHHHcCCCCEEEEEcCCcccc-ccccccccccCceeEEEeeCCH
Confidence 666788899997664 222233 23443 222334556678874
No 376
>PHA00159 endonuclease I
Probab=24.20 E-value=1.4e+02 Score=26.76 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=27.4
Q ss_pred HHhhhhcCCCCeEEEEEEeCCCC----CCCchHHHHHHHCCCCeEE
Q 018502 145 FLYGWQEGKLPVEITCVISNHDR----GPNSHVIRFLERHGIPYHY 186 (355)
Q Consensus 145 ll~~~~~~~l~~eI~~Vis~~~~----~~~~~v~~~a~~~gIP~~~ 186 (355)
++.+-+..+ .+|-.|+||... ++...-.++|++||+++..
T Consensus 79 lli~eQ~P~--ldiR~VFs~s~~klyKgSkTtYa~Wc~khG~~~ad 122 (148)
T PHA00159 79 LLIREQYPE--LDIRFVFSSSRTKLYKGSPTSYAEWCEKHGILFAD 122 (148)
T ss_pred HHHHHHCCC--ccEEEEEecCCchhhcCCCCcHHHHHHHcCcchhh
Confidence 344444454 478889998743 2345678999999999863
No 377
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=24.14 E-value=1.2e+02 Score=34.18 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=53.4
Q ss_pred HHHhhhhhccceeeeCCCCCCceE----EEEEeCCch---hHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHC
Q 018502 108 KLSKMFNAMRSVVRVPDIDPKYKV----AVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH 180 (355)
Q Consensus 108 ~la~~lg~~~~~~~~~~~~~~~ri----avl~S~~g~---~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~ 180 (355)
++.+-|++. +..+|...|..|. .|+.+.... -...+......| +.+.|.|..-. ....+.+...+.
T Consensus 378 Ef~~iY~l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~G----rPVLVgt~sI~-~SE~ls~~L~~~ 450 (764)
T PRK12326 378 QLRQFYDLG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETG----QPVLVGTHDVA-ESEELAERLRAA 450 (764)
T ss_pred HHHHHhCCc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcC----CCEEEEeCCHH-HHHHHHHHHHhC
Confidence 445568875 5678887777776 556554331 223333334455 46778775421 112467788899
Q ss_pred CCCeEEeCCCCChhHHHHHHH
Q 018502 181 GIPYHYLCAKENEREEELLEL 201 (355)
Q Consensus 181 gIP~~~~~~~~~~~~~~~~~~ 201 (355)
|||..++.++...+++++++.
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~ 471 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAE 471 (764)
T ss_pred CCcceeeccCchHhHHHHHHh
Confidence 999999887655566666544
No 378
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=24.13 E-value=3.1e+02 Score=24.66 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-C-chHH
Q 018502 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-N-SHVI 174 (355)
Q Consensus 97 ~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~-~~v~ 174 (355)
.+.+++.+.+.+.|+++|+ .+.++=|....-|.|.+..... +..+||-|+-.-. . ..+.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~--------------~v~~~QSN~EGelId~I~~a~~-----~~dgiiINpga~THtSiAl~ 86 (146)
T PRK05395 26 TTLADIEALLEEEAAELGV--------------ELEFFQSNHEGELIDRIHEARD-----GADGIIINPGAYTHTSVALR 86 (146)
T ss_pred CCHHHHHHHHHHHHHHcCC--------------EEEEEeeCcHHHHHHHHHhccc-----CCcEEEECchHHHHHHHHHH
Confidence 4789999999999988875 5778888888777776665321 3567888873211 1 2356
Q ss_pred HHHHHCCCCeEEeC-CCCChhHHHHHHH--hcCCCEEEEEeecc
Q 018502 175 RFLERHGIPYHYLC-AKENEREEELLEL--VQNTDFLVLARYMQ 215 (355)
Q Consensus 175 ~~a~~~gIP~~~~~-~~~~~~~~~~~~~--l~~~Dlivla~y~~ 215 (355)
+..+..++|+..+- +....|+ ++++. +...=..+.+|++-
T Consensus 87 DAl~~~~~P~VEVHiSNi~aRE-~fR~~S~is~~a~G~I~G~G~ 129 (146)
T PRK05395 87 DALAAVSIPVIEVHLSNIHARE-EFRHHSYISDVAVGVICGFGA 129 (146)
T ss_pred HHHHcCCCCEEEEecCCccccc-cccccccccccceEEEeeCCH
Confidence 66777899997664 2222332 33332 33344556788874
No 379
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=24.08 E-value=1.1e+02 Score=25.74 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=24.5
Q ss_pred ceEEEEEeCCchhHH--HHHhhhhcCCCCeEEEEEEeCC
Q 018502 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNH 165 (355)
Q Consensus 129 ~riavl~S~~g~~L~--~ll~~~~~~~l~~eI~~Vis~~ 165 (355)
+||++.+||...++. +++.++++. .+++..|+|..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc
Confidence 589999999976544 566666544 58898888864
No 380
>PRK14434 acylphosphatase; Provisional
Probab=23.81 E-value=2.9e+02 Score=22.41 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhh-hccceeeeCCCCCCceEEEEEeCCc-hhHHHHHhhhhcCCC-CeEEEEEEeC
Q 018502 102 MDEDFFKLSKMFN-AMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKL-PVEITCVISN 164 (355)
Q Consensus 102 L~~~l~~la~~lg-~~~~~~~~~~~~~~~riavl~S~~g-~~L~~ll~~~~~~~l-~~eI~~Vis~ 164 (355)
++.-...+|.++| +.-|+.+..| -+|-+.+.|.. ..+..++..++.|.. .+.|..|-..
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~d----GsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~~ 78 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDD----GTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDVT 78 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCC----CCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 4666677889999 9877654433 25778888876 589999999888864 4888776554
No 381
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=23.65 E-value=4.5e+02 Score=25.95 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=64.1
Q ss_pred HHHHHhcCCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCCCCCCCCc---
Q 018502 197 ELLELVQNTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGLLPSFKGG--- 273 (355)
Q Consensus 197 ~~~~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpslLP~yrG~--- 273 (355)
++.+++.++|++++.- |+ +---+.++..++++..+.+.+=+--| ||.
T Consensus 183 ~l~e~l~~aDvvv~~l-----Pl--------------------t~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVd 232 (312)
T PRK15469 183 ELSAFLSQTRVLINLL-----PN--------------------TPETVGIINQQLLEQLPDGAYLLNLA-----RGVHVV 232 (312)
T ss_pred cHHHHHhcCCEEEECC-----CC--------------------CHHHHHHhHHHHHhcCCCCcEEEECC-----CccccC
Confidence 4666777899998742 21 11122356677888777665444444 774
Q ss_pred -hHHHHHHHhCCcEeEE--EEEEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee
Q 018502 274 -KPAKQAFDAGVKLIGA--TSHFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEKQCLAKAIKSYCELRVL 345 (355)
Q Consensus 274 -~p~~~A~~~G~~~~G~--T~H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~~~l~~~i~~~~~~~~~ 345 (355)
..+..|+.+|. ..|+ -++.-+..-+..|++....+-+.|.....+-..+ ..+.+.+-++.+.+|+-.
T Consensus 233 e~aL~~aL~~g~-i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~~----~~~~~~~n~~~~~~g~~~ 302 (312)
T PRK15469 233 EDDLLAALDSGK-VKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPAE----AVEYISRTIAQLEKGERV 302 (312)
T ss_pred HHHHHHHHhcCC-eeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHHH----HHHHHHHHHHHHHcCCCC
Confidence 47788888884 3444 4444433333344444445555554332222222 345667888888887644
No 382
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=23.61 E-value=6.9e+02 Score=24.52 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=37.4
Q ss_pred ccEEEEEEcCCcc---chHHHHHHHHHhcCCe---EeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 41 THGIHVFHCPDEV---GIVAKLSECIASRGGN---ILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 41 ~~~ILTV~GpDr~---GIVA~VS~~La~~g~N---Ild~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
...+||+-|.|-. ||-|.+-++-+ +|+. .+-.=...+ ..|.+. + . ..+.+-+++.|++..+.++
T Consensus 3 ~~~~LtIAGsD~sGGAGIqADLKTf~a-~gvyg~saITaltaQN-t~gV~~----v--~--~v~~~~v~~Ql~av~~D~~ 72 (263)
T COG0351 3 LPVVLTIAGSDSSGGAGIQADLKTFQA-LGVYGMSAITALTAQN-TLGVHG----V--H--PVPPEFVEAQLDAVFSDIP 72 (263)
T ss_pred CceEEEEeccCCCccHHHHHHHHHHHh-cCCccceEEEEEEEee-cCceee----E--E--eCCHHHHHHHHHHHhhcCC
Confidence 4579999999997 69888877544 4432 222111111 122111 1 1 2356778888888766665
Q ss_pred h
Q 018502 115 A 115 (355)
Q Consensus 115 ~ 115 (355)
+
T Consensus 73 v 73 (263)
T COG0351 73 V 73 (263)
T ss_pred C
Confidence 4
No 383
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.53 E-value=8e+02 Score=25.67 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=38.3
Q ss_pred CceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--C
Q 018502 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (355)
Q Consensus 128 ~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~ 204 (355)
.+|++|++... ...+..++. ++..+|+.+.+.+... ..-..+....+--...+. +....++.+.+. +
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~-----ElGm~v~~~~~~~~~~--~~~~~l~~~~~~~~~v~~---d~~~~e~~~~i~~~~ 393 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQ-----ELGMEVVGTSVKKSTD--EDKERIKELMGPDAHMID---DANPRELYKMLKEAK 393 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHH-----HCCCEEEEEEEECCCH--HHHHHHHHHcCCCcEEEe---CCCHHHHHHHHhhcC
Confidence 46888875331 122333332 4678999888876321 111111111110112222 123456666665 7
Q ss_pred CCEEEEEeecc
Q 018502 205 TDFLVLARYMQ 215 (355)
Q Consensus 205 ~Dlivla~y~~ 215 (355)
+|+++-..+.+
T Consensus 394 pDliig~s~~~ 404 (475)
T PRK14478 394 ADIMLSGGRSQ 404 (475)
T ss_pred CCEEEecCchh
Confidence 99998654443
No 384
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=23.51 E-value=1.2e+02 Score=34.35 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=69.3
Q ss_pred HhcCCeEeEeeeeccCCCCe-EEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceE----EEEEeCC
Q 018502 64 ASRGGNILAADVFVPEKKNV-FYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV----AVLASKQ 138 (355)
Q Consensus 64 a~~g~NIld~~q~id~~~g~-F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~ri----avl~S~~ 138 (355)
+..|+.|..-+++....+-+ || ++-=.+.+..-+.. .+-+++.+-+++. +..+|...|..|+ .|+.+..
T Consensus 340 aKE~v~i~~e~~t~a~It~qn~F-r~Y~kl~GmTGTa~---te~~E~~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~ 413 (830)
T PRK12904 340 AKEGVKIQNENQTLASITFQNYF-RMYEKLAGMTGTAD---TEAEEFREIYNLD--VVVIPTNRPMIRIDHPDLIYKTEK 413 (830)
T ss_pred HhcCCCCCCCceeeeeeeHHHHH-HhcchhcccCCCcH---HHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEECHH
Confidence 56788888777764322222 33 22223333222222 2235566778875 5678887777664 3444433
Q ss_pred chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHH
Q 018502 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (355)
Q Consensus 139 g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~ 201 (355)
. -..++.+.+.+-.-..+.+.|+|+... ....+.+...+.|||...+..+...+++++.+.
T Consensus 414 ~-K~~aI~~~I~~~~~~grpVLIft~Si~-~se~Ls~~L~~~gi~~~vLnakq~eREa~Iia~ 474 (830)
T PRK12904 414 E-KFDAVVEDIKERHKKGQPVLVGTVSIE-KSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQ 474 (830)
T ss_pred H-HHHHHHHHHHHHHhcCCCEEEEeCcHH-HHHHHHHHHHHCCCceEeccCchHHHHHHHHHh
Confidence 2 233333332110012356788887632 122467778889999988876544555555543
No 385
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.49 E-value=2.1e+02 Score=29.06 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=40.1
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCC----CCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCC---CCCh-hHHH
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA---KENE-REEE 197 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~----l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~---~~~~-~~~~ 197 (355)
.++||+|+++|. |+.|..+|.. ++. ..++|..- ...+.-......+.-.+......+++. +.+. ...+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~lw-~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRMW-VLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEE-EecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 357999999988 5777776653 231 12455543 322210111233333332222222331 1121 1124
Q ss_pred HHHHhcCCCEEEEE
Q 018502 198 LLELVQNTDFLVLA 211 (355)
Q Consensus 198 ~~~~l~~~Dlivla 211 (355)
+.+.++++|++|++
T Consensus 87 l~eav~~aDiIvlA 100 (365)
T PTZ00345 87 LKEAVEDADLLIFV 100 (365)
T ss_pred HHHHHhcCCEEEEE
Confidence 44566689999887
No 386
>PRK07714 hypothetical protein; Provisional
Probab=23.43 E-value=1.1e+02 Score=25.07 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=32.0
Q ss_pred EEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc
Q 018502 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (355)
Q Consensus 134 l~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (355)
+++|...++. +++.|+ +..+.+-++-.......+..+|+.++||+..+.++ +|+=..+-
T Consensus 19 ~v~G~~~v~~----al~~g~--~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk-----~eLG~a~G 77 (100)
T PRK07714 19 VISGEELVLK----EVRSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR-----QQLGHAIG 77 (100)
T ss_pred eeecHHHHHH----HHHhCC--ceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH-----HHHHHHhC
Confidence 4555544444 444553 34433333322111246788899999999876532 35555553
No 387
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=23.37 E-value=5.5e+02 Score=25.46 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.8
Q ss_pred EEeCCchh----HHHHHhhhhcCCCCeEEEEEEeCCCCC----CCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--
Q 018502 134 LASKQEHC----LVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (355)
Q Consensus 134 l~S~~g~~----L~~ll~~~~~~~l~~eI~~Vis~~~~~----~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-- 203 (355)
++|...|+ +..|+..++.| +-+++||+---+ +++.+.+.|.++||++..+|-+ .+-+..++.
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~----sA~~tAL~~SG 126 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGP----SALITALSASG 126 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCc----cHHHHHHHHcC
Confidence 66766654 44466666666 346778875322 3567899999999999998832 123334443
Q ss_pred -CCCEEEEEeecc
Q 018502 204 -NTDFLVLARYMQ 215 (355)
Q Consensus 204 -~~Dlivla~y~~ 215 (355)
..|=.+..||.-
T Consensus 127 l~~~~F~F~GFLP 139 (275)
T COG0313 127 LPSQRFLFEGFLP 139 (275)
T ss_pred CCCCCeeEeccCC
Confidence 355555677764
No 388
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=23.22 E-value=9.1e+02 Score=27.37 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=50.0
Q ss_pred cEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccc
Q 018502 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (355)
Q Consensus 42 ~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~ 118 (355)
-..+++.|. +.+|+.++|-+.|+++|+|+.-++|..+ .... .+.++.. +.+.+.+.++++. ++ .
T Consensus 317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s--~~si----s~~i~~~--~~~~~~~~l~~~~--~~-~-- 383 (810)
T PRK09466 317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD--RQLL----QLAYTSE--VADSALKLLDDAA--LP-G-- 383 (810)
T ss_pred EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC--CcEE----EEEEeHH--HHHHHHHHHHhhc--CC-C--
Confidence 357888886 7789999999999999999999987643 2212 2222221 2344444444432 11 1
Q ss_pred eeeeCCCCCCceEEEEEeCC
Q 018502 119 VVRVPDIDPKYKVAVLASKQ 138 (355)
Q Consensus 119 ~~~~~~~~~~~riavl~S~~ 138 (355)
.+ .-.+..-+|++.+++-
T Consensus 384 ~i--~v~~~~a~VsvVG~gm 401 (810)
T PRK09466 384 EL--KLREGLALVALVGAGV 401 (810)
T ss_pred cE--EEeCCeEEEEEeCCCc
Confidence 12 2224556788887765
No 389
>PRK14424 acylphosphatase; Provisional
Probab=23.22 E-value=3e+02 Score=22.58 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeC
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~ 164 (355)
-++.....+|.++|+.-|.-+++| -+|-+.+.|....+.+++..+++|...++|.-|...
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v~~~ 80 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLED----GTVEAMIQGPAAQIDRMLAWLRHGPPAARVTEVTFE 80 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCC----CCEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 467777888999999766432222 268888888888899999988877545777766543
No 390
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=23.13 E-value=2e+02 Score=25.04 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=40.7
Q ss_pred ceEEEEEeCCc--hhHH-HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCC
Q 018502 129 YKVAVLASKQE--HCLV-DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (355)
Q Consensus 129 ~riavl~S~~g--~~L~-~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~ 205 (355)
+||.|+..++- |.+. +++.... +.+.+.-.++......+.+....+.++++||+......+ .. +++ .+.++
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~-~l-t~~---~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGR-KL-TAE---MARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccC-cC-CHH---HHhhC
Confidence 47776655543 3343 3554322 223334344432222223457889999999997421111 01 111 23379
Q ss_pred CEEEEEeecc
Q 018502 206 DFLVLARYMQ 215 (355)
Q Consensus 206 Dlivla~y~~ 215 (355)
|+|+...-.+
T Consensus 77 DlIl~M~~~~ 86 (144)
T PRK11391 77 DLILAMESEH 86 (144)
T ss_pred CEEEECCHHH
Confidence 9999765433
No 391
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=23.03 E-value=6.9e+02 Score=28.63 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCC-CCeEEeCCCCChhHHHHHHHhc-
Q 018502 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQ- 203 (355)
Q Consensus 127 ~~~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~g-IP~~~~~~~~~~~~~~~~~~l~- 203 (355)
..+|+++++.+. ...+..+|. ++..+|+++-+.+.. ........+..+ -+.. +. +.+..++.+.++
T Consensus 319 ~GKrv~i~~g~~~~~~la~~l~-----elGmevv~~g~~~~~--~~d~~~~~~~~~~~~~v-i~---~~d~~el~~~i~~ 387 (917)
T PRK14477 319 EGKRVVLFTGGVKTWSMVNALR-----ELGVEVLAAGTQNST--LEDFARMKALMHKDAHI-IE---DTSTAGLLRVMRE 387 (917)
T ss_pred cCCEEEEECCCchHHHHHHHHH-----HCCCEEEEEcCCCCC--HHHHHHHHHhcCCCCEE-EE---CCCHHHHHHHHHh
Confidence 357888886332 122333332 467898876554321 111111111111 2222 22 123456777765
Q ss_pred -CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCC---CCCCCCCchHHHHH
Q 018502 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHG---LLPSFKGGKPAKQA 279 (355)
Q Consensus 204 -~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHps---lLP~yrG~~p~~~A 279 (355)
+||+++..+..+ .+-.+.+.+++.+|+. ..-.|+|.--+...
T Consensus 388 ~~pDLlig~~~~~----------------------------------~~a~k~giP~~~~~~~~~~p~~GY~G~~~l~~~ 433 (917)
T PRK14477 388 KMPDLIVAGGKTK----------------------------------FLALKTRTPFLDINHGRSHPYAGYEGMVTFARQ 433 (917)
T ss_pred cCCCEEEecCchh----------------------------------hHHHHcCCCeEEccCCccCCccchhhHHHHHHH
Confidence 899998665554 2334566778888763 34468886555444
Q ss_pred HH
Q 018502 280 FD 281 (355)
Q Consensus 280 ~~ 281 (355)
+.
T Consensus 434 l~ 435 (917)
T PRK14477 434 LD 435 (917)
T ss_pred HH
Confidence 44
No 392
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=22.85 E-value=1.8e+02 Score=22.82 Aligned_cols=38 Identities=29% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHhhhhcCCCCeEEEEEEeCCCC-CC-----CchHHHHHHHCCCCeE
Q 018502 144 DFLYGWQEGKLPVEITCVISNHDR-GP-----NSHVIRFLERHGIPYH 185 (355)
Q Consensus 144 ~ll~~~~~~~l~~eI~~Vis~~~~-~~-----~~~v~~~a~~~gIP~~ 185 (355)
++++.+++| +|.+||..... .. ...+.+.|.+++||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 456666666 45556554431 11 3468899999999985
No 393
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=22.81 E-value=4e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=36.3
Q ss_pred CceEEEEEeCC-chhHHH-HHhhhhcCCCCeEEEEEEeCCCCCC---CchHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~-g~~L~~-ll~~~~~~~l~~eI~~Vis~~~~~~---~~~v~~~a~~~gIP~~~~~ 188 (355)
..+|+|..||. .|.+.. ++... .+ +.++.++..+..... ...+.++|++.|||+..++
T Consensus 23 ~~~vvv~lSGGiDSs~~a~la~~~-~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~ 85 (248)
T cd00553 23 FKGVVLGLSGGIDSALVAALAVRA-LG--RENVLALFMPSRYSSEETREDAKELAEALGIEHVNID 85 (248)
T ss_pred CCCEEEeCCCcHHHHHHHHHHHHH-hC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEec
Confidence 46899999987 354433 33322 22 246777666543211 1357889999999998776
No 394
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=22.72 E-value=1.6e+02 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=24.0
Q ss_pred HHHhhhhcCCCCeEEEEEEeCCCCC----CCchHHHHHHHCCCCeEE
Q 018502 144 DFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHY 186 (355)
Q Consensus 144 ~ll~~~~~~~l~~eI~~Vis~~~~~----~~~~v~~~a~~~gIP~~~ 186 (355)
.+++.+++| ++..||...... .+..+++.|.++|||+..
T Consensus 58 ~i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHcC----CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 345555556 455555533211 134688999999999984
No 395
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=22.60 E-value=1.1e+02 Score=34.34 Aligned_cols=138 Identities=20% Similarity=0.215 Sum_probs=72.8
Q ss_pred HhcCCeEeEeeeeccCCCCe-EEEEEEEEeCCCCCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceE----EEEEeCC
Q 018502 64 ASRGGNILAADVFVPEKKNV-FYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV----AVLASKQ 138 (355)
Q Consensus 64 a~~g~NIld~~q~id~~~g~-F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~ri----avl~S~~ 138 (355)
+..|+.|..-+++....+-+ || ++-=.+.+..-+.. .+=+++.+-+|+. +..+|...|..|+ .|+.+..
T Consensus 315 aKE~v~i~~e~~t~a~It~qn~F-r~Y~kl~GmTGTa~---te~~E~~~iY~l~--vv~IPtnkp~~R~d~~d~i~~t~~ 388 (745)
T TIGR00963 315 AKEGVEIQNENQTLATITYQNFF-RLYEKLSGMTGTAK---TEEEEFEKIYNLE--VVVVPTNRPVIRKDLSDLVYKTEE 388 (745)
T ss_pred HhcCCCcCCCceeeeeeeHHHHH-hhCchhhccCCCcH---HHHHHHHHHhCCC--EEEeCCCCCeeeeeCCCeEEcCHH
Confidence 46788888877765322222 33 33223333222222 2234566778875 4667777776554 4455433
Q ss_pred chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc-CCCEEE
Q 018502 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLV 209 (355)
Q Consensus 139 g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~-~~Dliv 209 (355)
. -..++.+.+..-.-..+.+.|+|+.... ...+.+...++|||...+..+...+++++.+.-. ...+.|
T Consensus 389 ~-k~~ai~~~i~~~~~~grpvLV~t~si~~-se~ls~~L~~~gi~~~~Lna~q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 389 E-KWKAVVDEIKERHAKGQPVLVGTTSVEK-SELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred H-HHHHHHHHHHHHHhcCCCEEEEeCcHHH-HHHHHHHHHHcCCCeEEeeCChHHHHHHHHHhcCCCceEEE
Confidence 2 2334433321111124568888876321 2346777888999998876553345555555432 345444
No 396
>PRK11175 universal stress protein UspE; Provisional
Probab=22.53 E-value=2e+02 Score=27.12 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHCCCCeEEeCCCCChhHHHHHHHhc--CCCEEEEEeeccccchhhHhhhhhhhhhhhcccCcccccccccCChH
Q 018502 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMILSGK 250 (355)
Q Consensus 173 v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~--~~Dlivla~y~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~~~il~~~ 250 (355)
+.++++++++|....--..+...+++.+..+ ++|++|++...+. .+.-+|-.=...+
T Consensus 228 l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~---------------------~~~~~llGS~a~~ 286 (305)
T PRK11175 228 MKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRT---------------------GLSAAFLGNTAEH 286 (305)
T ss_pred HHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccC---------------------CCcceeecchHHH
Confidence 4566777888853211111233456777766 8999999877661 1111111224677
Q ss_pred HHhhcCCCeEEecC
Q 018502 251 FLRSYGKDVINIHH 264 (355)
Q Consensus 251 ~l~~~~~~~INiHp 264 (355)
++++.+..++=++|
T Consensus 287 v~~~~~~pVLvv~~ 300 (305)
T PRK11175 287 VIDHLNCDLLAIKP 300 (305)
T ss_pred HHhcCCCCEEEEcC
Confidence 78888888887775
No 397
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=22.50 E-value=2.7e+02 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCCC------chHHHHHHHCCCCeEEeC
Q 018502 158 ITCVISNHDRGPN------SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 158 I~~Vis~~~~~~~------~~v~~~a~~~gIP~~~~~ 188 (355)
+..||.+++++.. ....+.|+++|+-|+++|
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iP 64 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIP 64 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE--
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEee
Confidence 4568888865421 236789999999999988
No 398
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=22.32 E-value=2.5e+02 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=18.6
Q ss_pred EEEEEEcCCccchHHHHHHHHHhcCCeEeE
Q 018502 43 GIHVFHCPDEVGIVAKLSECIASRGGNILA 72 (355)
Q Consensus 43 ~ILTV~GpDr~GIVA~VS~~La~~g~NIld 72 (355)
..+++.-.|+..++ .++..+.++|..|..
T Consensus 2 i~isv~d~~K~~~~-~~a~~l~~~G~~i~A 30 (112)
T cd00532 2 VFLSVSDHVKAMLV-DLAPKLSSDGFPLFA 30 (112)
T ss_pred EEEEEEcccHHHHH-HHHHHHHHCCCEEEE
Confidence 34666666777776 445566677766654
No 399
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=22.20 E-value=3.9e+02 Score=25.98 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=36.2
Q ss_pred EEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEE
Q 018502 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVL 210 (355)
Q Consensus 132 avl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivl 210 (355)
+|+.-+..+.++.++...+. ...+ .|.-.++...+....+...++|||+.+++. ..+...+.++|.+++
T Consensus 89 vILT~s~S~~v~~~l~~~~~---~~~V-~v~ESrP~~eG~~~a~~L~~~GI~vtli~D------sa~~~~m~~vd~Vlv 157 (253)
T PRK06372 89 VIGTISSSQVLKAFISSSEK---IKSV-YILESRPMLEGIDMAKLLVKSGIDVVLLTD------ASMCEAVLNVDAVIV 157 (253)
T ss_pred EEEEeCCcHHHHHHHHhcCC---CCEE-EEecCCCchHHHHHHHHHHHCCCCEEEEeh------hHHHHHHHhCCEEEE
Confidence 34444467778887754221 1232 223333332233455556678999988762 123334446777655
No 400
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=22.18 E-value=3.1e+02 Score=23.25 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=31.2
Q ss_pred EEeCCchhHHHHHh----hhhcCCC-CeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 134 LASKQEHCLVDFLY----GWQEGKL-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 134 l~S~~g~~L~~ll~----~~~~~~l-~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
+++..+...+++.. .++...+ +..|..+.|-..+.....+.++|+++|+|+..++
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 44555543333332 2333344 3677777776544334578999999999999876
No 401
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=22.09 E-value=65 Score=27.54 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=28.6
Q ss_pred ceEEEEEeCCchhHH--------HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQEHCLV--------DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~g~~L~--------~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~ 188 (355)
.||-|++..+-+=|. ..++.+-. .++.|||-.+.-.....+.+.|+++++|+...+
T Consensus 49 ~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~----~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~ 112 (127)
T PF02603_consen 49 NRIQIIGNTESAYLNSLDEEERKERLEKLFS----YNPPCIIVTRGLEPPPELIELAEKYNIPLLRTP 112 (127)
T ss_dssp CSEEEE-HHHHHHHCCS-HHHHCCHHHHHCT----TT-S-EEEETTT---HHHHHHHHHCT--EEEES
T ss_pred CeEEEEcHHHHHHHHHCCHHHHHHHHHHHhC----CCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcC
Confidence 499999865532211 12232222 334444444433345679999999999999865
No 402
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=22.05 E-value=2.3e+02 Score=28.00 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=36.8
Q ss_pred eEEEEEeCC-ch-hHHHHHhhhhcCCCCeEEEEEEeCCCCCC---CchHHHHHHHCCC-CeEEeCC
Q 018502 130 KVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGI-PYHYLCA 189 (355)
Q Consensus 130 riavl~S~~-g~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~~---~~~v~~~a~~~gI-P~~~~~~ 189 (355)
||++..||. .| .+..++... .| .++.+|..++.-.. ...+.++|+++|+ |++.++.
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~ 62 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDA 62 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcC
Confidence 678888886 34 455555432 13 46888888774321 2357888988886 9988774
No 403
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=21.99 E-value=2.6e+02 Score=30.23 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=41.3
Q ss_pred CeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeC-CCC---------------ChhHHHHHHHhcCCCEEEEEeecc
Q 018502 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---------------NEREEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 155 ~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~-~~~---------------~~~~~~~~~~l~~~Dlivla~y~~ 215 (355)
|+-++....++-. -...+.+++.+-++|++..+ .|. ...++++.+.++.+|+++.+|-+-
T Consensus 212 p~ILad~~~~r~~-~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~l 287 (557)
T COG3961 212 PVILADALVSRFG-LEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLL 287 (557)
T ss_pred cEEecchhhhhhh-hHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEE
Confidence 4555555554421 12457889999999999887 331 112468888888999999998874
No 404
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=21.95 E-value=7.7e+02 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=19.8
Q ss_pred EEEEEEcC-CccchHHHHHHHHHhcCCeEe
Q 018502 43 GIHVFHCP-DEVGIVAKLSECIASRGGNIL 71 (355)
Q Consensus 43 ~ILTV~Gp-Dr~GIVA~VS~~La~~g~NIl 71 (355)
.-+.++|. .-+|=+..+.+.|.+.|+++.
T Consensus 163 ~~VNliG~~~~~~d~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 163 YTINYIGDYNIQGDTEVLQKYFERMGIQVL 192 (415)
T ss_pred CcEEEEccCCCcccHHHHHHHHHHcCCeEE
Confidence 33445553 335666778899999999886
No 405
>PRK09084 aspartate kinase III; Validated
Probab=21.88 E-value=3.2e+02 Score=28.43 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=39.1
Q ss_pred ccEEEEEEcC---CccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhh
Q 018502 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (355)
Q Consensus 41 ~~~ILTV~Gp---Dr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~l 113 (355)
+-.+++++|. +++|+.+++-+.|++. ||.=++|... . +.+.+-++ .++..++++.+-++|
T Consensus 383 ~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~I~qgsS--e----~sIS~vV~-----~~d~~~al~~LH~~f 445 (448)
T PRK09084 383 GLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICYGAS--S----HNLCFLVP-----ESDAEQVVQALHQNL 445 (448)
T ss_pred CeEEEEEECCCcccCcChHHHHHHHHHhC--CeEEEEEcCC--C----CcEEEEEc-----HHHHHHHHHHHHHHH
Confidence 6689999997 7899999999999875 5555555422 1 12222222 344566666665555
No 406
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=21.82 E-value=2.5e+02 Score=23.39 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=33.1
Q ss_pred eEEEEEeCCc-h-hHHHHHhhhhcCCCCeEEEEEEeCCCCCCC---chHHHHHHHCCCCeEEeCC
Q 018502 130 KVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 130 riavl~S~~g-~-~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~---~~v~~~a~~~gIP~~~~~~ 189 (355)
||+|..||.- | .+..++...... . .++..|..+..-..+ ..+.++|+++|+|+..+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~ 63 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRP 63 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECC
Confidence 4677777653 3 344444432211 0 256666666532111 3578888999999988763
No 407
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=21.63 E-value=33 Score=29.50 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=39.3
Q ss_pred EEecCcCCCCCeeeeEEEeCCCCCCHHHHHHHHHHHHH-H-----HHHHHHHHHHhCCeeeecCCcee
Q 018502 292 HFVTEELDAGPIIEQMVERVSHRDNLRTFVQKSEDVEK-Q-----CLAKAIKSYCELRVLPYEMNKTV 353 (355)
Q Consensus 292 H~v~~~~D~G~Ii~q~~~~I~~~dt~~~l~~k~~~~~~-~-----~l~~~i~~~~~~~~~~~~~~~tv 353 (355)
+++.++-|=|| +.+.+.+|..++.+++.+.-- . .-++.++++-.|+++- +++|+
T Consensus 9 frl~dg~digp------~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe--D~~TL 68 (113)
T cd01814 9 FRLYDGSDIGP------KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE--NSKTV 68 (113)
T ss_pred EEccCCCccCc------cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC--CCCcH
Confidence 45677788887 567899999999999974321 1 3367888888999874 36663
No 408
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=21.50 E-value=8.7e+02 Score=25.39 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred cccCCCCCCcccEEEEEEcCCcc---chHHHHHHHHHhcCCeEeEeeeec-cC-CCCeEEEEEEEEeCCCCCChHHHHHH
Q 018502 31 PIESSVSPTLTHGIHVFHCPDEV---GIVAKLSECIASRGGNILAADVFV-PE-KKNVFYSRSEFIFDPIKWPREQMDED 105 (355)
Q Consensus 31 ~~~~~~~~~~~~~ILTV~GpDr~---GIVA~VS~~La~~g~NIld~~q~i-d~-~~g~F~Mr~~v~~~~~~~~~~~L~~~ 105 (355)
|++-+|. +..||||.|.|-. ||-|.+-. +..+||.-..+-..+ .. ..|... + ..++.+.+.+.
T Consensus 223 ~~~~~~~---~~~vLtIag~D~sggaGi~aDi~t-~~~lg~~~~~~vta~t~qn~~~~~~----~----~~~~~~~~~~q 290 (504)
T PTZ00347 223 PVENPMK---IPTVLTVSGSDSGGGAGHQADLKT-LEALGVYSTSALTSLTAQNTKGVQQ----I----QVVNEDFFAAQ 290 (504)
T ss_pred cccCCCC---CCeEEEEeCcCCCChHHHHHHHHH-HHHcCCcccchheeEEeEcCcceee----E----EeCCHHHHHHH
Confidence 5777773 4589999999986 68888765 777887775322211 11 123221 1 13467888998
Q ss_pred HHHHHhhhh
Q 018502 106 FFKLSKMFN 114 (355)
Q Consensus 106 l~~la~~lg 114 (355)
++.+.+.+.
T Consensus 291 l~~l~~d~~ 299 (504)
T PTZ00347 291 IDSVMSDFN 299 (504)
T ss_pred HHHHHhCCC
Confidence 988876543
No 409
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=21.48 E-value=7.4e+02 Score=23.89 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCc---hhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHH
Q 018502 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (355)
Q Consensus 99 ~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g---~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~ 175 (355)
.+++++..++.+++.-- .-+.-+.||++.=|.. +....|++++....+..+++-=|| .+..
T Consensus 69 ~e~~~~~~~e~a~~va~--------~l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVs--------S~~a 132 (234)
T COG2243 69 REELEDAWEEAAAEVAA--------ELEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVS--------SFSA 132 (234)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcc--------hHHH
Confidence 57777777777766421 1123468888887765 455566666654334455443344 4688
Q ss_pred HHHHCCCCeEEeCCC-----CChhHHHHHHHhcCCCEEEEEeecc
Q 018502 176 FLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 176 ~a~~~gIP~~~~~~~-----~~~~~~~~~~~l~~~Dlivla~y~~ 215 (355)
.|..+|+|+..-+.. .+..++++.+.+.+.|.+|+.--.+
T Consensus 133 ~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~ 177 (234)
T COG2243 133 CAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGR 177 (234)
T ss_pred HHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCC
Confidence 999999999764421 1233455666676899888765544
No 410
>PRK14439 acylphosphatase; Provisional
Probab=21.37 E-value=2.8e+02 Score=25.43 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhc-CCCCeEEEEEEeC
Q 018502 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISN 164 (355)
Q Consensus 101 ~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~-~~l~~eI~~Vis~ 164 (355)
-++.-...+|.++|+.-|+.+..| -.|-+.+.|....++++++.+++ |...+.|..|-..
T Consensus 89 GFR~fv~~~A~qlGLtGwVrNl~D----GsVEI~aQG~ee~Ie~Fi~~L~~~gPp~A~Ve~I~v~ 149 (163)
T PRK14439 89 GFRYTTQYEAKKLGLTGYAKNLDD----GSVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSE 149 (163)
T ss_pred CchHHHHHHHHHhCCEEEEEECCC----CCEEEEEEcCHHHHHHHHHHHhhCCCCCeEEEEEEEE
Confidence 457777888999999876544332 36888889998999999999887 4334778777654
No 411
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=21.33 E-value=1.6e+02 Score=24.97 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=20.0
Q ss_pred chHHHHHHHCCCCeEEeCCCCChhHHHHHHHhc
Q 018502 171 SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (355)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~ 203 (355)
..+..+|++++||+.++.++ +++=+.+-
T Consensus 59 ~~i~~lc~~~~Ip~~~~~sk-----~eLG~a~G 86 (117)
T TIGR03677 59 AHLPALCEEKGIPYVYVKKK-----EDLGAAAG 86 (117)
T ss_pred HHHHHHHHHcCCCEEEeCCH-----HHHHHHhC
Confidence 46788999999998886532 34555553
No 412
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.20 E-value=2.7e+02 Score=24.85 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC-hhHHHHHHHhcCCCEEEEEeeccccchhhH
Q 018502 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-EREEELLELVQNTDFLVLARYMQPVPLQKE 222 (355)
Q Consensus 144 ~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~-~~~~~~~~~l~~~Dlivla~y~~~~~~~~~ 222 (355)
.+.+..+...||.+.++-+++|++..++.+ +..-...=++.. +++.+ .+.=....+++++|++ +++|+-+- ||
T Consensus 13 ~I~~ga~~~~L~v~F~~PvtdH~~SD~~G~-~iLG~e~~~fw~-D~k~a~iN~iRT~~li~~aDvV-VvrFGekY-KQ-- 86 (141)
T PF11071_consen 13 EIKEGAKAAGLPVEFTSPVTDHEASDDCGV-DILGEEPNKFWR-DHKGAKINAIRTRTLIEKADVV-VVRFGEKY-KQ-- 86 (141)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhhhhhhH-HHhCCCCccccc-cchhhhhhHHHHHHHHhhCCEE-EEEechHH-HH--
Confidence 355666667789888888999975322222 222111122221 22211 0111122344589988 46776411 11
Q ss_pred hhhhhhhhhhhcccCcccccccccCChHHHhhcCCCeEEecCCC
Q 018502 223 AYLGYKLLESLSSKGSLTSYFNMILSGKFLRSYGKDVINIHHGL 266 (355)
Q Consensus 223 ~~~~~~~~~~~~~~~~~s~y~~~il~~~~l~~~~~~~INiHpsl 266 (355)
|..-+..-.....+.+.|-+||--
T Consensus 87 --------------------WNaAfDAg~a~AlgKplI~lh~~~ 110 (141)
T PF11071_consen 87 --------------------WNAAFDAGYAAALGKPLITLHPEE 110 (141)
T ss_pred --------------------HHHHhhHHHHHHcCCCeEEecchh
Confidence 111234455666778889988753
No 413
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.17 E-value=1.9e+02 Score=21.44 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=30.3
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEE
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRS 88 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~ 88 (355)
+|.|...| ++-+..|..++.++|..+++..+. +|.|.+.+
T Consensus 29 ~l~v~~d~-~~~~~di~~~~~~~g~~~~~~~~~----~~~~~i~I 68 (70)
T PF01206_consen 29 VLEVLVDD-PAAVEDIPRWCEENGYEVVEVEEE----GGEYRILI 68 (70)
T ss_dssp EEEEEESS-TTHHHHHHHHHHHHTEEEEEEEES----SSSEEEEE
T ss_pred EEEEEECC-ccHHHHHHHHHHHCCCEEEEEEEe----CCEEEEEE
Confidence 45565444 556789999999999999999883 67776654
No 414
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.16 E-value=2.2e+02 Score=27.06 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=35.7
Q ss_pred EEEEEeCCchhHHHHH-hhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcC-CCEE
Q 018502 131 VAVLASKQEHCLVDFL-YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN-TDFL 208 (355)
Q Consensus 131 iavl~S~~g~~L~~ll-~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~-~Dli 208 (355)
-.||.-+..+....+| .+++.|+ ..+|. |+=.++...+...++...+.|||+.+++. ..+...+.+ +|.+
T Consensus 109 ~~ILT~~~S~~v~~~l~~a~~~~~-~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~~vd~V 180 (282)
T PF01008_consen 109 DTILTHGYSSTVERFLLSAKKKGK-KFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPRDVDKV 180 (282)
T ss_dssp EEEEEES--SHHHHHHHHHHHTTE-EEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHCTESEE
T ss_pred eEEEEeCCchHHHHHHHHHHHcCC-eEEEE-EccCCcchhhhhHHHHhhhcceeEEEEec------hHHHHHHHHhCCee
Confidence 3455545555555544 4455553 34443 22233221122345555678999998762 234455556 8888
Q ss_pred EEEee
Q 018502 209 VLARY 213 (355)
Q Consensus 209 vla~y 213 (355)
+++.-
T Consensus 181 liGad 185 (282)
T PF01008_consen 181 LIGAD 185 (282)
T ss_dssp EEE-S
T ss_pred EEeee
Confidence 66543
No 415
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=21.08 E-value=3e+02 Score=21.17 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=44.4
Q ss_pred EEEEEcCCccchHHHHHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 44 ILTV~GpDr~GIVA~VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
-++|.||+.- +.+|...|.++++.|++.++.. ++.+ ++...+|-. ..-.+..+|..+.+..+.
T Consensus 5 ~v~I~~P~~~--~g~V~~~l~~rrg~i~~~~~~~---~~~~--~i~~~~P~~--~~~~~~~~Lrs~T~G~a~ 67 (79)
T cd03710 5 ELTIDVPEEY--SGAVIEKLGKRKGEMVDMEPDG---NGRT--RLEFKIPSR--GLIGFRSEFLTDTRGTGI 67 (79)
T ss_pred EEEEEeCchh--hHHHHHHHHhCCCEEEccEECC---CCEE--EEEEEECHH--HHcCcHHHHHhhCCCeEE
Confidence 3566778754 5688889999999999988631 2333 466677753 346788888888777764
No 416
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=21.07 E-value=4.2e+02 Score=23.74 Aligned_cols=100 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-C-chH
Q 018502 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-N-SHV 173 (355)
Q Consensus 96 ~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~-~~v 173 (355)
..+.+++.+.+++.++++|+ .+.++=|....-|.|.+..... +..+||-|+-.-. . ..+
T Consensus 23 ~~tl~di~~~~~~~a~~~g~--------------~v~~~QSN~EGelId~i~~a~~-----~~dgiIINpga~THtSiAl 83 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNV--------------ELEFFQSNSEGQLIDKIHEAEG-----QYDGIIINPGALTHTSVAL 83 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCC--------------EEEEEeeCcHHHHHHHHHhccc-----cCCEEEEcChHHhhhHHHH
Confidence 34789999999999998875 5777888888777777765321 2456888863211 1 235
Q ss_pred HHHHHHCCCCeEEeC-CCCChhHHHHHH--HhcCCCEEEEEeecc
Q 018502 174 IRFLERHGIPYHYLC-AKENEREEELLE--LVQNTDFLVLARYMQ 215 (355)
Q Consensus 174 ~~~a~~~gIP~~~~~-~~~~~~~~~~~~--~l~~~Dlivla~y~~ 215 (355)
.+..+..++|+..+- +....|| ++++ .+...=..+.+|++-
T Consensus 84 ~DAl~~~~~P~vEVHiSNi~aRE-~fR~~S~is~~~~G~I~G~G~ 127 (141)
T TIGR01088 84 RDALAAVSLPVVEVHLSNVHARE-EFRHHSYTAPVAGGVIVGLGA 127 (141)
T ss_pred HHHHHcCCCCEEEEEcCCccccc-cccccccccccceEEEeecCH
Confidence 666677899997664 2222332 3432 222334456688874
No 417
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=20.96 E-value=3.8e+02 Score=23.92 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCC-C-chH
Q 018502 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP-N-SHV 173 (355)
Q Consensus 96 ~~~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~-~-~~v 173 (355)
..+.+++.+.+.+.++++|+ .+.++-|....-|.|.+..... +..+||-|+-.-. . ..+
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~--------------~v~~~QSN~Egelid~I~~a~~-----~~dgiIINpga~THtSvAi 83 (140)
T cd00466 23 TTTLADIEALLRELAAELGV--------------EVEFFQSNHEGELIDWIHEARD-----GADGIIINPGAYTHTSIAL 83 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCC--------------EEEEEeeCcHHHHHHHHHHhhc-----cCcEEEEcchHHHHHHHHH
Confidence 35789999999999998875 5778888888777777765322 3567888863211 1 235
Q ss_pred HHHHHHCCCCeEEeC-CCCChhHHHHHHH--hcCCCEEEEEeecc
Q 018502 174 IRFLERHGIPYHYLC-AKENEREEELLEL--VQNTDFLVLARYMQ 215 (355)
Q Consensus 174 ~~~a~~~gIP~~~~~-~~~~~~~~~~~~~--l~~~Dlivla~y~~ 215 (355)
.+..+..++|+..+- +....|| ++++. +...=..+.+||+-
T Consensus 84 ~DAl~~~~~P~VEVHiSNi~aRE-~fR~~S~is~~~~G~I~G~G~ 127 (140)
T cd00466 84 RDALAAVSIPVIEVHISNIHARE-EFRHHSVISPVATGVIAGLGA 127 (140)
T ss_pred HHHHHcCCCCEEEEecCCccccc-ccccccccccceeEEEEeCCH
Confidence 666778899997664 2222332 34332 32334455678774
No 418
>PRK10799 metal-binding protein; Provisional
Probab=20.92 E-value=6e+02 Score=24.02 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHhcCCeEeEeeeeccCCC--CeEE----------------EEEEEEeCCCCCChHHHHHHHHHHHhhhh
Q 018502 53 VGIVAKLSECIASRGGNILAADVFVPEKK--NVFY----------------SRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (355)
Q Consensus 53 ~GIVA~VS~~La~~g~NIld~~q~id~~~--g~F~----------------Mr~~v~~~~~~~~~~~L~~~l~~la~~lg 114 (355)
+|...+.-..|.++|+++.......|.-. |... +-..-.++. ..+.++|.+.++ +.|+
T Consensus 76 ~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l~~-~~s~~~l~~~vk---~~l~ 151 (247)
T PRK10799 76 RGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTM-PVPGLELASWIE---ARLG 151 (247)
T ss_pred cchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEECCC-CcCHHHHHHHHH---HHhC
Confidence 34555566667777777777655544211 2100 000012221 345666666555 4566
Q ss_pred hccceeeeCCC--CCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCC
Q 018502 115 AMRSVVRVPDI--DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN 192 (355)
Q Consensus 115 ~~~~~~~~~~~--~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~ 192 (355)
.. ...+.+. .+.+|||++ +|+|..+.. .+...| +++ .||..-+ .+-...|.+.|+.+..+.+-.+
T Consensus 152 ~~--~~~~~~~~~~~i~rVAi~-~GsG~~~i~--~a~~~g---aD~--~ITGd~k---~h~~~~A~~~gl~li~~GH~~s 218 (247)
T PRK10799 152 RK--PLWCGDTGPEVVQRVAWC-TGGGQSFID--SAARFG---VDA--FITGEVS---EQTIHSAREQGLHFYAAGHHAT 218 (247)
T ss_pred CC--eEEECCCCCCcccEEEEE-CCchHHHHH--HHHHcC---CCE--EEECCcc---hHHHHHHHHCCCeEEEcCchHH
Confidence 53 1222232 345889987 455543211 112223 333 4554321 2346778999999988776322
Q ss_pred hhH--HHHHHHhc
Q 018502 193 ERE--EELLELVQ 203 (355)
Q Consensus 193 ~~~--~~~~~~l~ 203 (355)
++- +.+.+.|+
T Consensus 219 E~~~~~~la~~L~ 231 (247)
T PRK10799 219 ERGGIRALSEWLN 231 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 221 34555554
No 419
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.90 E-value=1.6e+02 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=25.2
Q ss_pred hHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCEEEEE
Q 018502 172 HVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (355)
Q Consensus 172 ~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dlivla 211 (355)
.+.++|+++|+++..... ...++.+.+.+.|+++++
T Consensus 19 km~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 19 ALNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILA 54 (99)
T ss_pred HHHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEc
Confidence 468899999999876432 233455555588988876
No 420
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=20.85 E-value=6.6e+02 Score=23.79 Aligned_cols=92 Identities=20% Similarity=0.173 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHhhhhhccceeeeC-C-CCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchH
Q 018502 96 KWPREQMDEDFFKLSKMFNAMRSVVRVP-D-IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHV 173 (355)
Q Consensus 96 ~~~~~~L~~~l~~la~~lg~~~~~~~~~-~-~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v 173 (355)
..+.++|.+.++ +.|++. ..|+. + ..+-+|||++ +|.|..+ +-.+.+.| +++ .||..-+ .+.
T Consensus 138 ~~~~~~~~~~vk---~~l~~~--~vr~~~~~~~~i~rVAi~-~GsG~~~--~~~a~~~g---aD~--~ITGd~k---~h~ 201 (249)
T TIGR00486 138 PIESLEEVLEIK---KVLNVK--PLLVVKNGPEYVKKVAVV-SGSGLSF--IMKALREG---VDA--YITGDLS---HHT 201 (249)
T ss_pred CCCHHHHHHHHH---HHhCCC--CEEEeCCCCCceeEEEEE-cCchHHH--HHHHHHcC---CCE--EEecCCc---hHH
Confidence 346666655554 466653 24442 2 2456789987 4555432 11222233 333 4554321 234
Q ss_pred HHHHHHCCCCeEEeCCCCChhH--HHHHHHhc
Q 018502 174 IRFLERHGIPYHYLCAKENERE--EELLELVQ 203 (355)
Q Consensus 174 ~~~a~~~gIP~~~~~~~~~~~~--~~~~~~l~ 203 (355)
...|.++|+.+..+.+-.+++- +.+.+.++
T Consensus 202 ~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~ 233 (249)
T TIGR00486 202 AHLARELGLNVIDAGHYATERGGLRKLMEDLN 233 (249)
T ss_pred HHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHH
Confidence 6678999999988776432221 24455554
No 421
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=20.80 E-value=9.3e+02 Score=24.86 Aligned_cols=30 Identities=13% Similarity=-0.054 Sum_probs=19.5
Q ss_pred EEEEEEcCC-ccchHHHHHHHHHhcCCeEeE
Q 018502 43 GIHVFHCPD-EVGIVAKLSECIASRGGNILA 72 (355)
Q Consensus 43 ~ILTV~GpD-r~GIVA~VS~~La~~g~NIld 72 (355)
.-+-++|.- -.|=+..+.+.|.+.|+++.-
T Consensus 198 ~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~ 228 (456)
T TIGR01283 198 HDINLIGEFNVAGEFWHVKPLLEKLGIRVLA 228 (456)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHcCCeEEE
Confidence 344555532 245667788888888888764
No 422
>COG2403 Predicted GTPase [General function prediction only]
Probab=20.74 E-value=2.6e+02 Score=29.21 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=46.0
Q ss_pred CCCceEEEEEeCC--chhHHHHHhhhhcCCCCeEEEEE----Ee-CCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHH
Q 018502 126 DPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCV----IS-NHDRGPNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (355)
Q Consensus 126 ~~~~riavl~S~~--g~~L~~ll~~~~~~~l~~eI~~V----is-~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~ 198 (355)
..++||++++.+. .|+.+..+... . ..+++++ |- -.++.....+......+|||++... .-+++
T Consensus 4 ~a~kRviiLgaggrdfhv~n~a~r~~--~--~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k-----~~~~l 74 (449)
T COG2403 4 KARKRVIILGAGGRDFHVFNVALRDN--P--EYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEK-----DYDDL 74 (449)
T ss_pred CCceeEEEEeccCcccchhhHHhccC--C--cceEEEEEEEEecCCccccCCCCcccccccCCccccccc-----cHHHH
Confidence 4568999998765 36776666532 1 1344332 22 1222223446777788999998632 13566
Q ss_pred HHHhc--CCCEEEEE
Q 018502 199 LELVQ--NTDFLVLA 211 (355)
Q Consensus 199 ~~~l~--~~Dlivla 211 (355)
-++++ ..|++|++
T Consensus 75 ek~ire~~VD~~Vla 89 (449)
T COG2403 75 EKIIREKDVDIVVLA 89 (449)
T ss_pred HHHHHHcCCCeEEEE
Confidence 67776 68988765
No 423
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=20.72 E-value=4e+02 Score=26.05 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=39.2
Q ss_pred ceEEEEEeCCchhHHHHHhhhh-cCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCeEEeCCCCChhHHHHHHHhcCCCE
Q 018502 129 YKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (355)
Q Consensus 129 ~riavl~S~~g~~L~~ll~~~~-~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~~~~~~~~~~~~~~~~~~l~~~Dl 207 (355)
+||+|++.|+ --.+++..+. .|.++.+-. +++++. +....++++++|+.. ... ....+.++|+
T Consensus 2 ~~IgfIG~G~--Mg~Ai~~gl~~~g~~~~~~I-~v~~~~---~e~~~~l~~~~g~~~--~~~--------~~~~~~~adv 65 (266)
T COG0345 2 MKIGFIGAGN--MGEAILSGLLKSGALPPEEI-IVTNRS---EEKRAALAAEYGVVT--TTD--------NQEAVEEADV 65 (266)
T ss_pred ceEEEEccCH--HHHHHHHHHHhcCCCCcceE-EEeCCC---HHHHHHHHHHcCCcc--cCc--------HHHHHhhCCE
Confidence 6899997543 4455666654 443553333 456663 223446889999884 221 1122336888
Q ss_pred EEEEeec
Q 018502 208 LVLARYM 214 (355)
Q Consensus 208 ivla~y~ 214 (355)
++++==.
T Consensus 66 v~LavKP 72 (266)
T COG0345 66 VFLAVKP 72 (266)
T ss_pred EEEEeCh
Confidence 8877433
No 424
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=20.51 E-value=5.2e+02 Score=24.33 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=34.6
Q ss_pred CceEEEEEeCC-chh-HHHHHhhhhcCCCCeEEEEEEeCCCCC-C---CchHHHHHHHCCCCeEEeC
Q 018502 128 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRG-P---NSHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 128 ~~riavl~S~~-g~~-L~~ll~~~~~~~l~~eI~~Vis~~~~~-~---~~~v~~~a~~~gIP~~~~~ 188 (355)
..+|+|-.||. .|. +..++... .+ .++.++..++... + ...+.++|+++|||+..++
T Consensus 22 ~~~V~vglSGGiDSsvla~l~~~~-~~---~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~ 84 (250)
T TIGR00552 22 AKGVVLGLSGGIDSAVVAALCVEA-LG---EQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNID 84 (250)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHh-hC---CceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEc
Confidence 45888888887 344 33344332 12 2556665554211 1 2357899999999998875
No 425
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=20.39 E-value=5.7e+02 Score=24.25 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHhhhhhccceeeeCCCCCCceEEEEEeCCch---hHHHHHhhhhcC--CCCeEEEEEEeCCCCCCCch
Q 018502 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEH---CLVDFLYGWQEG--KLPVEITCVISNHDRGPNSH 172 (355)
Q Consensus 98 ~~~~L~~~l~~la~~lg~~~~~~~~~~~~~~~riavl~S~~g~---~L~~ll~~~~~~--~l~~eI~~Vis~~~~~~~~~ 172 (355)
+.+.+.++.++.++..-- ....-++|+++.+|... ....++..++.. ..+++|+-=| +.
T Consensus 70 ~~~~~~~~~~~~~~~i~~--------~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGI--------ss 133 (238)
T PRK05948 70 DEEQLEQAWQAAADQVWH--------YLEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGV--------CS 133 (238)
T ss_pred ChHHHHHHHHHHHHHHHH--------HHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECCh--------hH
Confidence 456666666666554311 01123689999998753 334444444431 2344443222 24
Q ss_pred HHHHHHHCCCCeEEeCCC-----CChhHHHHHHHhcCCCEEEEEeecc
Q 018502 173 VIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 173 v~~~a~~~gIP~~~~~~~-----~~~~~~~~~~~l~~~Dlivla~y~~ 215 (355)
+...|...|+|+..-... ...+.+++.+.+...|.+|+..-.+
T Consensus 134 ~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l~~~l~~~~~vVlmk~~~ 181 (238)
T PRK05948 134 PLAAAAALGIPLTLGSQRLAILPALYHLEELEQALTWADVVVLMKVSS 181 (238)
T ss_pred HHHHHHHhCCCeecCCCeEEEEcCCCCHHHHHHHHhCCCEEEEEECCc
Confidence 678889999998642210 0112244555555688888766443
No 426
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=20.32 E-value=69 Score=27.98 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=37.4
Q ss_pred eEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCchHHHHHHHCCCCe----EEeCCCCChhHHHHHHHhcC
Q 018502 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY----HYLCAKENEREEELLELVQN 204 (355)
Q Consensus 130 riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~~v~~~a~~~gIP~----~~~~~~~~~~~~~~~~~l~~ 204 (355)
||+|+++|. |+.+...|.. +| ++|. +.+.++ ..+.++-+.+..+. ..++.... -..++.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~-l~~~~~----~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVT-LWGRDE----EQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEE-EETSCH----HHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEE-EEeccH----HHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHhCc
Confidence 799999988 4666666653 33 5665 343321 23444444444222 11111100 11245556668
Q ss_pred CCEEEEEeecc
Q 018502 205 TDFLVLARYMQ 215 (355)
Q Consensus 205 ~Dlivla~y~~ 215 (355)
+|+++++--.+
T Consensus 70 ad~IiiavPs~ 80 (157)
T PF01210_consen 70 ADIIIIAVPSQ 80 (157)
T ss_dssp -SEEEE-S-GG
T ss_pred ccEEEecccHH
Confidence 99999874443
No 427
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=20.31 E-value=3.4e+02 Score=25.78 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=37.8
Q ss_pred ceEEEEEeCC-chhHHHHHhhhhcCCCCeEEEEEEeCCCCCCC---chHHHHHHHCCCCeEEeC
Q 018502 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (355)
Q Consensus 129 ~riavl~S~~-g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~---~~v~~~a~~~gIP~~~~~ 188 (355)
+++++-.||. .|.+.+.|-.-.-| +-++.+|+.+....+. .....+|++.||++..++
T Consensus 19 ~~vVvglSGGiDSav~A~La~~Alg--~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~ 80 (242)
T PF02540_consen 19 KGVVVGLSGGIDSAVVAALAVKALG--PDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVID 80 (242)
T ss_dssp SEEEEEETSSHHHHHHHHHHHHHHG--GGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhh--hccccccccccccCChHHHHHHHHHHHHhCCCeeccc
Confidence 5888888887 46655544332223 3578888775321111 357889999999999887
No 428
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=20.28 E-value=4e+02 Score=22.97 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=38.2
Q ss_pred HHHHHHhcCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCChHHHHHHHHHHHhhhhh
Q 018502 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (355)
Q Consensus 59 VS~~La~~g~NIld~~q~id~~~g~F~Mr~~v~~~~~~~~~~~L~~~l~~la~~lg~ 115 (355)
+...+.++|..++++.-... .+....++.++-++ .++.+++.+.=..+...++.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~--~~~~~l~V~id~~~-gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKE--GGNRILRVFIDKDG-GVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEE--TTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEEC--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHHHHHcc
Confidence 45678899999999999854 67778888888754 58888888877777777765
No 429
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.08 E-value=8.1e+02 Score=23.77 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCCCCceEEEEEeCCchhHHHHHhhhhcCCCCeEEEEEEeCCCCCCCc-----hHHHHHHHCC----CCeEEeCCCCCh
Q 018502 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHG----IPYHYLCAKENE 193 (355)
Q Consensus 123 ~~~~~~~riavl~S~~g~~L~~ll~~~~~~~l~~eI~~Vis~~~~~~~~-----~v~~~a~~~g----IP~~~~~~~~~~ 193 (355)
+-...++||||..|..|..+.|++.-++.....+++... ...-.|.++ ..++.+.+.+ +-+..+..-++.
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~-p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILY-PASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEE-eccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 334457899999999999999998876653323555432 222222221 2344444443 555555432222
Q ss_pred -------hHHHHHHHhcCCCEEEEEeecc
Q 018502 194 -------REEELLELVQNTDFLVLARYMQ 215 (355)
Q Consensus 194 -------~~~~~~~~l~~~Dlivla~y~~ 215 (355)
+++++.+.+.++.+=|+.|-+|
T Consensus 88 ~eDL~~FN~e~varai~~~~~PvisaIGH 116 (319)
T PF02601_consen 88 IEDLWAFNDEEVARAIAASPIPVISAIGH 116 (319)
T ss_pred hHHhcccChHHHHHHHHhCCCCEEEecCC
Confidence 3467777776655666777777
No 430
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=20.05 E-value=4.4e+02 Score=26.68 Aligned_cols=93 Identities=16% Similarity=0.039 Sum_probs=51.2
Q ss_pred ceEEEEEe--CCchh--HHHHHhhh-hcCCCCeEEEEEEeCCCCCC--CchHHHHHHHCCC--CeEEeCCCCChhHHHHH
Q 018502 129 YKVAVLAS--KQEHC--LVDFLYGW-QEGKLPVEITCVISNHDRGP--NSHVIRFLERHGI--PYHYLCAKENEREEELL 199 (355)
Q Consensus 129 ~riavl~S--~~g~~--L~~ll~~~-~~~~l~~eI~~Vis~~~~~~--~~~v~~~a~~~gI--P~~~~~~~~~~~~~~~~ 199 (355)
.++.|++. |..+| ++. |+.+ +...-+++|.+.++-+.... ...|.+.+++.-- -+..+ .+...-++-+
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~-L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L--~e~l~f~eYl 221 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEA-LRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQIL--TEKLPFDDYL 221 (322)
T ss_pred CceEEEEeCCCCCcccHHHH-HHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEeh--hhhCCHHHHH
Confidence 46788774 44454 333 3332 11122578888888753211 1245666665432 12221 1223346778
Q ss_pred HHhcCCCEEEEEeeccccchhhHhhhhhhhh
Q 018502 200 ELVQNTDFLVLARYMQPVPLQKEAYLGYKLL 230 (355)
Q Consensus 200 ~~l~~~Dlivla~y~~~~~~~~~~~~~~~~~ 230 (355)
++|..+|+.+....-| +|.|...+|
T Consensus 222 ~lL~~~Dl~~f~~~RQ------QgiGnl~lL 246 (322)
T PRK02797 222 ALLRQCDLGYFIFARQ------QGIGTLCLL 246 (322)
T ss_pred HHHHhCCEEEEeechh------hHHhHHHHH
Confidence 8888999999888877 455555444
No 431
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=2e+02 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.8
Q ss_pred chHHHHHHHCCCCeEEeCC
Q 018502 171 SHVIRFLERHGIPYHYLCA 189 (355)
Q Consensus 171 ~~v~~~a~~~gIP~~~~~~ 189 (355)
..++++|+++||||+...+
T Consensus 145 ~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 145 DQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHHHHhCCCeeeecc
Confidence 4578999999999998663
Done!