BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018505
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 2 ASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISF 61
A N T+ +F++L+A NK CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF
Sbjct: 17 AEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSF 76
Query: 62 VRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQ 115
+RST LDS W+ QL+ M GGN A FF+QHG T KY SRAA++Y++
Sbjct: 77 IRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYRE 130
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 84/119 (70%), Gaps = 7/119 (5%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-W 70
+F++L++ NK+CFDC AKNP+WAS+TYG+FLCIDCS HRSLGVH+SF+RST LDS W
Sbjct: 19 IFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNW 78
Query: 71 SAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEA 129
S QL+ M GGN A FF QHG AKY SRAA+LY +E K++A +A
Sbjct: 79 SWFQLRCMQVGGNASASSFFHQHG-CSTNDTNAKYNSRAAQLY-----REKIKSLASQA 131
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 3/118 (2%)
Query: 15 KLKAKSE-NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAE 73
+LK + E N CFDC NP W SV +GIFLCI+CS VHRSLGVHIS VRS +D ++ E
Sbjct: 14 RLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDE 73
Query: 74 QLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAEEAGL 131
QLK + GGN + Q + + +G +D E KY ++AA+ Y++IL + + N+ A L
Sbjct: 74 QLKYIDKGGNKKCQTYLENYGISDFIP-ERKYRTKAADHYRKIL-RSIVHNVDPPAPL 129
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 80/124 (64%), Gaps = 3/124 (2%)
Query: 1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
SD L D F+ ++ + EN+ CFDC ++NPTW S+++ +F+C++CS+ HR +GVHIS
Sbjct: 17 FVSDKLRDN--FFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHIS 74
Query: 61 FVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQ-HGWTDGGKIEAKYTSRAAELYKQILAK 119
FVRS++LD ++ QL M GGN RA+ +FKQ G K + +S YKQIL
Sbjct: 75 FVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDS 134
Query: 120 EVAK 123
E+++
Sbjct: 135 EISE 138
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V ++++ + EN +CF+C A NP W SVTYGI++C++CS HR LGVH+SFVRS +D W
Sbjct: 27 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWK 86
Query: 72 AEQLKMMVYGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAAELYK 114
+L+ M GGN + + F + Q + ++ KY SRAA L++
Sbjct: 87 DIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFR 130
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V ++++ + EN +CF+C A NP W SVTYGI++C++CS HR LGVH+SFVRS +D W
Sbjct: 28 VLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWK 87
Query: 72 AEQLKMMVYGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAAELYK 114
+L+ M GGN + + F + Q + ++ KY SRAA L++
Sbjct: 88 DIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFR 131
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 57/81 (70%)
Query: 11 LVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
L+ KL + +NK C DC AK P WAS G+F+CI C+ +HR+LGVHIS V+S NLD W
Sbjct: 18 LILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 77
Query: 71 SAEQLKMMVYGGNNRAQVFFK 91
+AEQ++ M GN +A++ ++
Sbjct: 78 TAEQIQCMQDMGNTKARLLYE 98
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V L + +NK C DC +K P WAS G+F+CI C+ +HR+LGVHIS V+S NLD W+
Sbjct: 17 VLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 76
Query: 72 AEQLKMMVYGGNNRAQVFFKQH 93
EQ++ M GN +A ++ +
Sbjct: 77 QEQIQCMQEMGNGKANRLYEAY 98
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V ++++ N C DC P WAS+ G+ LCI CS +HRSLGVH S VRS LDSW
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWE 94
Query: 72 AEQLKMMVYGGN 83
E +K+M GN
Sbjct: 95 PELVKLMCELGN 106
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V ++++ N C DC P WAS+ G+ LCI CS +HRSLGVH S VRS LDSW
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWE 94
Query: 72 AEQLKMMVYGGN 83
E +K+M GN
Sbjct: 95 PELVKLMCELGN 106
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
V ++++ N C DC P WAS+ G+ LCI CS +HRSLGVH S VRS LDSW
Sbjct: 35 VVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWE 94
Query: 72 AEQLKMMVYGGN 83
E +K+M GN
Sbjct: 95 PELVKLMCELGN 106
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 KLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQ 74
+L + N C DC A +P WAS T G+F+C+ CS +HR++ +S V+S LD+W Q
Sbjct: 29 ELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQ 87
Query: 75 LKMMVYGGNNRAQVFFK 91
++ M GN+ A+ F+
Sbjct: 88 VEFMASHGNDAARARFE 104
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 15 KLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQ 74
+L + N C DC A +P WAS T G+F+C+ CS +HR++ +S V+S LD+W Q
Sbjct: 27 ELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWEEAQ 85
Query: 75 LKMMVYGGNNRAQVFFK 91
++ M GN+ A+ F+
Sbjct: 86 VEFMASHGNDAARARFE 102
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 11 LVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
L+ ++K++ N C DC A +PTW S G+ CI CS VHR LGV S ++S LD
Sbjct: 31 LLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLL 90
Query: 71 SAEQLKMMVYGGN 83
+L + + GN
Sbjct: 91 GPSELLLALNMGN 103
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 11 LVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSW 70
L+ ++K++ N C DC A +PTW S G+ CI CS VHR LGV S ++S LD
Sbjct: 12 LLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLL 71
Query: 71 SAEQLKMMVYGGN 83
+L + + GN
Sbjct: 72 GPSELLLALNMGN 84
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
+ +++ + N +C DC A +PTW S GI CI+CS +HR LGVH S ++S LD
Sbjct: 7 IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLG 66
Query: 72 AEQLKMMVYGGN 83
+L + GN
Sbjct: 67 TSELLLAKNIGN 78
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
+ R + N+ CFDC+ + PT+ ++T G F+C CS R L V+S ++ +++
Sbjct: 10 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHR-VKSISMTTFT 68
Query: 72 AEQLKMMVYGGN 83
++++ + GN
Sbjct: 69 QQEIEFLQKHGN 80
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 12 VFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
+ R + N+ CFDC+ + PT+ ++T G F+C CS R L V+S ++ +++
Sbjct: 15 MLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFT 73
Query: 72 AEQLKMMVYGGN 83
++++ + GN
Sbjct: 74 QQEIEFLQKHGN 85
>pdb|1E0V|A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme
Intermediate At 1.7 A
Length = 313
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 47 DCSAVHRSLGVHISFVRSTNLDSWSAEQLKMM 78
DC AV R LG+ + VR + DSW +EQ ++
Sbjct: 253 DCLAVSRCLGITVWGVRDS--DSWRSEQTPLL 282
>pdb|1E0W|A Chain A, Xylanase 10a From Sreptomyces Lividans. Native Structure
At 1.2 Angstrom Resolution
pdb|1E0X|A Chain A, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1E0X|B Chain B, Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme
Intermediate At 1.65 A
pdb|1OD8|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine Lactam
pdb|1V0K|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Deoxynojirimycin At Ph 5.8
pdb|1V0L|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-isofagomine At Ph 5.8
pdb|1V0M|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-deoxynojirimycin At Ph 7.5
pdb|1V0N|A Chain A, Xylanase Xyn10a From Streptomyces Lividans In Complex With
Xylobio-Isofagomine At Ph 7.5
Length = 313
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 47 DCSAVHRSLGVHISFVRSTNLDSWSAEQLKMM 78
DC AV R LG+ + VR + DSW +EQ ++
Sbjct: 253 DCLAVSRCLGITVWGVRDS--DSWRSEQTPLL 282
>pdb|1XAS|A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The
Streptomyces Lividans Xylanase A, A Member Of The F
Family Of Beta-1,4-D-Glycanses
Length = 299
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 47 DCSAVHRSLGVHISFVRSTNLDSWSAEQLKMM 78
DC AV R LG+ + VR + DSW +EQ ++
Sbjct: 253 DCLAVSRCLGITVWGVRDS--DSWRSEQTPLL 282
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 30 AKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYG 81
A + T+A+VT DC AV R LG+ + VR T DSW++ ++ G
Sbjct: 242 ASSSTYAAVTN------DCLAVSRCLGITVWGVRDT--DSWASGDTPLLFNG 285
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 41 GIFLCIDCSAVHRSLGVHISFVRSTN-LDSWSAEQLKMMVYGGNNRAQVFFKQH 93
G+ +CI S + G+++S N L S A K V GG+N+ Q+ K+H
Sbjct: 181 GVKVCITESDLENYPGLYLSASEGANRLSSMHAPYPKRTVQGGHNQLQMLVKEH 234
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 30 AKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYG 81
A + T+A+VT DC AV R LG+ + VR T DSW + ++ G
Sbjct: 242 ASSSTYAAVTN------DCLAVSRCLGITVWGVRDT--DSWRSGDTPLLFNG 285
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 30 AKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYG 81
A + T+A+VT DC AV R LG+ + VR T DSW + ++ G
Sbjct: 242 ASSSTYAAVTN------DCLAVSRCLGITVWGVRDT--DSWRSGDTPLLFNG 285
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 20 SENKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63
SE + C +C A P W G +LC C H+ G + +R
Sbjct: 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,108,669
Number of Sequences: 62578
Number of extensions: 319271
Number of successful extensions: 549
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 27
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)