Query 018505
Match_columns 355
No_of_seqs 235 out of 1105
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 16:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.6E-41 5.4E-46 298.1 13.4 126 1-127 8-134 (149)
2 2p57_A GTPase-activating prote 100.0 8.8E-41 3E-45 291.5 10.0 124 1-125 16-140 (144)
3 2owa_A Arfgap-like finger doma 100.0 2.1E-40 7.1E-45 287.8 9.5 117 6-122 20-137 (138)
4 3dwd_A ADP-ribosylation factor 100.0 2E-39 6.7E-44 283.4 9.7 116 8-123 24-140 (147)
5 3sub_A ADP-ribosylation factor 100.0 5.4E-38 1.8E-42 278.1 10.8 115 7-122 6-121 (163)
6 2crr_A Stromal membrane-associ 100.0 8.1E-36 2.8E-40 260.0 5.2 89 6-94 13-101 (141)
7 2iqj_A Stromal membrane-associ 100.0 5.1E-36 1.7E-40 259.2 3.7 88 6-93 11-98 (134)
8 2olm_A Nucleoporin-like protei 100.0 5.8E-34 2E-38 248.0 6.2 84 9-93 12-95 (140)
9 3o47_A ADP-ribosylation factor 100.0 1.9E-31 6.4E-36 257.7 9.4 112 8-119 23-135 (329)
10 3jue_A Arfgap with coiled-coil 100.0 1.4E-30 4.9E-35 256.0 4.5 84 10-93 33-116 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 1.1E-29 3.6E-34 252.3 6.2 87 7-94 19-105 (386)
12 1dcq_A PYK2-associated protein 99.9 5.5E-27 1.9E-31 219.9 6.9 87 7-93 2-88 (278)
13 2b0o_E UPLC1; arfgap, structur 99.9 1.1E-26 3.6E-31 220.5 8.4 85 9-93 29-113 (301)
14 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-26 7.1E-31 231.7 6.2 102 7-108 8-123 (497)
15 1gnf_A Transcription factor GA 88.8 0.24 8.2E-06 34.9 2.5 39 20-58 2-41 (46)
16 3dfx_A Trans-acting T-cell-spe 86.0 0.32 1.1E-05 36.5 1.8 39 19-57 4-43 (63)
17 2vut_I AREA, nitrogen regulato 82.8 0.52 1.8E-05 32.7 1.7 35 23-57 2-37 (43)
18 4gat_A Nitrogen regulatory pro 80.4 0.84 2.9E-05 34.5 2.2 38 20-57 7-45 (66)
19 4hc9_A Trans-acting T-cell-spe 78.4 0.78 2.7E-05 38.1 1.6 36 22-57 5-41 (115)
20 1u5k_A Hypothetical protein; O 74.9 0.81 2.8E-05 41.6 0.9 47 19-81 147-193 (244)
21 2kae_A GATA-type transcription 70.2 1.1 3.8E-05 34.3 0.5 38 20-58 6-46 (71)
22 1d4u_A Nucleotide excision rep 51.6 3.2 0.00011 34.4 0.0 32 21-52 4-36 (111)
23 4hc9_A Trans-acting T-cell-spe 49.8 7.8 0.00027 32.0 2.2 39 20-58 57-96 (115)
24 1tjl_A DNAK suppressor protein 46.7 8.9 0.0003 33.1 2.1 34 20-53 109-143 (151)
25 3g9m_A Glucocorticoid receptor 45.3 8.1 0.00028 30.4 1.5 30 21-53 1-30 (90)
26 1ffk_W Ribosomal protein L37AE 44.7 16 0.00053 28.1 3.0 37 13-51 17-54 (73)
27 2ebl_A COUP transcription fact 42.9 12 0.00041 29.5 2.1 33 19-54 4-36 (89)
28 2nll_B Protein (thyroid hormon 41.9 11 0.00037 30.5 1.8 29 23-54 2-30 (103)
29 1hcq_A Protein (estrogen recep 40.1 12 0.00042 29.1 1.8 32 20-54 2-33 (84)
30 1r4i_A Androgen receptor; AR, 39.2 11 0.00037 30.7 1.4 33 19-54 4-36 (105)
31 3k7a_M Transcription initiatio 38.7 13 0.00044 35.7 2.1 51 1-53 1-53 (345)
32 2han_B Ecdysone receptor; tran 38.6 13 0.00045 30.8 1.9 32 20-54 6-37 (119)
33 2a66_A Orphan nuclear receptor 36.5 11 0.00039 31.0 1.1 34 18-54 5-38 (113)
34 2han_A Protein ultraspiracle; 35.9 14 0.00048 29.3 1.5 31 21-54 9-39 (93)
35 1dsz_A RAR-alpha, retinoic aci 35.8 16 0.00055 28.5 1.9 29 23-54 5-33 (86)
36 3dzy_D Peroxisome proliferator 35.3 16 0.00056 35.9 2.3 32 20-54 48-79 (419)
37 1dl6_A Transcription factor II 34.8 14 0.00049 26.6 1.3 29 23-52 12-40 (58)
38 1kb2_A Vitamin D3 receptor; VD 34.5 16 0.00054 29.9 1.7 31 21-54 5-35 (110)
39 2kgo_A Uncharacterized protein 34.2 5.9 0.0002 32.6 -1.0 33 21-53 55-88 (108)
40 1ynw_B Retinoic acid receptor 33.4 15 0.0005 29.5 1.3 30 22-54 3-32 (99)
41 1a6y_A Orphan nuclear receptor 31.7 17 0.00057 28.9 1.3 32 20-54 5-36 (94)
42 1dsz_B RXR-alpha, retinoic aci 30.9 14 0.00047 28.8 0.7 31 21-54 4-34 (85)
43 1lo1_A Steroid hormone recepto 28.6 13 0.00045 29.8 0.2 30 22-54 4-33 (98)
44 1cit_A NGFI-B, protein (orphan 28.4 26 0.00089 27.5 1.9 28 24-54 2-29 (89)
45 2uzg_A Ubiquitin carboxyl-term 27.4 21 0.00071 28.3 1.2 28 20-47 23-53 (97)
46 3j21_g 50S ribosomal protein L 25.8 17 0.00059 26.0 0.4 26 20-51 12-37 (51)
47 4hn5_A Glucocorticoid receptor 25.8 21 0.00073 29.5 1.1 34 17-53 24-57 (117)
48 3cbb_A HNF-4-alpha, hepatocyte 25.5 27 0.00092 26.7 1.5 28 24-54 2-29 (78)
49 3dzy_A Retinoic acid receptor 25.1 17 0.00059 36.4 0.4 30 21-53 136-165 (467)
50 1vq8_Z 50S ribosomal protein L 24.6 28 0.00095 27.1 1.4 34 17-52 22-55 (83)
51 3cc2_Z 50S ribosomal protein L 23.6 19 0.00064 30.0 0.3 33 17-51 55-87 (116)
52 3c5k_A HD6, histone deacetylas 23.0 36 0.0012 27.6 1.8 25 22-46 24-48 (109)
53 3iz6_N 40S ribosomal protein S 22.4 52 0.0018 23.9 2.4 39 20-63 16-54 (56)
54 3j21_d 50S ribosomal protein L 20.7 37 0.0013 26.9 1.5 30 20-50 31-77 (89)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=298.09 Aligned_cols=126 Identities=52% Similarity=0.935 Sum_probs=120.9
Q ss_pred CCCcchhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCC-CCHHHHHHHh
Q 018505 1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMV 79 (355)
Q Consensus 1 M~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~-W~~~~l~~m~ 79 (355)
|+++..++.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||+ |+++||++|+
T Consensus 8 m~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~ 87 (149)
T 2crw_A 8 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ 87 (149)
T ss_dssp SCCCCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred cCChHHHHHHHhhcCCCCCCccccccccHHHHHHHHHHHHHHHHHhhh
Q 018505 80 YGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNMAE 127 (355)
Q Consensus 80 ~gGN~~an~~~e~~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~k~~~~ 127 (355)
.+||.++|+||++++... .+|++||.++++.+||++|.+.+++....
T Consensus 88 ~~GN~~an~~~e~~~~~~-~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~ 134 (149)
T 2crw_A 88 VGGNASASSFFHQHGCST-NDTNAKYNSRAAQLYREKIKSLASQATRK 134 (149)
T ss_dssp TTCHHHHHHHHHHHCCCC-CCHHHHTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHhcCCCC-cchhhCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 78999999999999999999998888754
No 2
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-41 Score=291.51 Aligned_cols=124 Identities=53% Similarity=0.959 Sum_probs=117.3
Q ss_pred CCCcchhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCC-CCHHHHHHHh
Q 018505 1 MASDNLTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMV 79 (355)
Q Consensus 1 M~~~~~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~-W~~~~l~~m~ 79 (355)
|++++..+.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+|||++||. |+++||++|+
T Consensus 16 ~~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~ 95 (144)
T 2p57_A 16 SAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQ 95 (144)
T ss_dssp --CCCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHH
Confidence 677888999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred cCChHHHHHHHhhcCCCCCCccccccccHHHHHHHHHHHHHHHHHh
Q 018505 80 YGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKNM 125 (355)
Q Consensus 80 ~gGN~~an~~~e~~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~k~~ 125 (355)
.+||.++|+||+++|+.. .+|+.||.++++.+||++|.+.+++.+
T Consensus 96 ~~GN~~an~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~~~~ 140 (144)
T 2p57_A 96 VGGNANATAFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGSAAL 140 (144)
T ss_dssp HCCHHHHHHHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHHHTC
T ss_pred HhCHHHHHHHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 589999999999999999999888765
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.1e-40 Score=287.84 Aligned_cols=117 Identities=42% Similarity=0.789 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHH
Q 018505 6 LTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (355)
Q Consensus 6 ~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~ 85 (355)
..+++++++.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.+
T Consensus 20 ~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~ 99 (138)
T 2owa_A 20 DKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGR 99 (138)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-cCCCCCCccccccccHHHHHHHHHHHHHHH
Q 018505 86 AQVFFKQ-HGWTDGGKIEAKYTSRAAELYKQILAKEVA 122 (355)
Q Consensus 86 an~~~e~-~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~ 122 (355)
+|+||++ +|+.....+++||.++++.+|+++|.++|+
T Consensus 100 an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 100 ARNYFKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999999 898877899999999999999999998764
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=283.42 Aligned_cols=116 Identities=39% Similarity=0.814 Sum_probs=106.5
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHH
Q 018505 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (355)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an 87 (355)
+.+++|+.|++.|+|++|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.++|
T Consensus 24 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an 103 (147)
T 3dwd_A 24 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFR 103 (147)
T ss_dssp HHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC-CCCCCccccccccHHHHHHHHHHHHHHHH
Q 018505 88 VFFKQHG-WTDGGKIEAKYTSRAAELYKQILAKEVAK 123 (355)
Q Consensus 88 ~~~e~~g-~~~~~~i~~KY~~raa~~Yr~~l~~~v~k 123 (355)
+||++++ +++...|++||.+++|.+||++|+..++.
T Consensus 104 ~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg 140 (147)
T 3dwd_A 104 EFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEG 140 (147)
T ss_dssp HHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcC
Confidence 9999985 45557899999999999999999987653
No 5
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5.4e-38 Score=278.08 Aligned_cols=115 Identities=46% Similarity=0.806 Sum_probs=106.7
Q ss_pred hhHHHHHHHHHcC-CCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHH
Q 018505 7 TDKNLVFRKLKAK-SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (355)
Q Consensus 7 ~~~~~i~~~L~~~-p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~ 85 (355)
+...++|++|++. |+|++|+|||+++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||.+
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHH
Confidence 3456789999875 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCccccccccHHHHHHHHHHHHHHH
Q 018505 86 AQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVA 122 (355)
Q Consensus 86 an~~~e~~g~~~~~~i~~KY~~raa~~Yr~~l~~~v~ 122 (355)
+|+||+++|+.+ ..+..||.++++.+||++|++.|+
T Consensus 86 an~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~ 121 (163)
T 3sub_A 86 CQTYLENYGISD-FIPERKYRTKAADHYRKILRSIVH 121 (163)
T ss_dssp HHHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHc
Confidence 999999999876 345789999999999999998764
No 6
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=259.99 Aligned_cols=89 Identities=45% Similarity=0.876 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHH
Q 018505 6 LTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (355)
Q Consensus 6 ~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~ 85 (355)
.++.+++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.||+|||+||||+||.|+++||++|+.+||..
T Consensus 13 ~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~ 92 (141)
T 2crr_A 13 NEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTK 92 (141)
T ss_dssp TTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC
Q 018505 86 AQVFFKQHG 94 (355)
Q Consensus 86 an~~~e~~g 94 (355)
+|+||+++.
T Consensus 93 an~~~e~~l 101 (141)
T 2crr_A 93 ARLLYEANL 101 (141)
T ss_dssp HHHHGGGSC
T ss_pred HHHHHHhcC
Confidence 999999863
No 7
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=259.24 Aligned_cols=88 Identities=42% Similarity=0.836 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHH
Q 018505 6 LTDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNR 85 (355)
Q Consensus 6 ~~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~ 85 (355)
.+..+++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.||+|||+||||+||.|+++||++|+.+||..
T Consensus 11 ~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~ 90 (134)
T 2iqj_A 11 VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGK 90 (134)
T ss_dssp --CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHH
Confidence 34446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 018505 86 AQVFFKQH 93 (355)
Q Consensus 86 an~~~e~~ 93 (355)
+|+||+++
T Consensus 91 an~~~e~~ 98 (134)
T 2iqj_A 91 ANRLYEAY 98 (134)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 99999976
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=5.8e-34 Score=248.05 Aligned_cols=84 Identities=24% Similarity=0.568 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHHH
Q 018505 9 KNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQV 88 (355)
Q Consensus 9 ~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an~ 88 (355)
..++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.||+| |+||||+||.|++++|++|+.+||..+|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 45799999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhhc
Q 018505 89 FFKQH 93 (355)
Q Consensus 89 ~~e~~ 93 (355)
||+++
T Consensus 91 ~~e~~ 95 (140)
T 2olm_A 91 IWLGL 95 (140)
T ss_dssp HHTTT
T ss_pred HHHhh
Confidence 99976
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=257.70 Aligned_cols=112 Identities=40% Similarity=0.827 Sum_probs=104.6
Q ss_pred hHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHH
Q 018505 8 DKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQ 87 (355)
Q Consensus 8 ~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an 87 (355)
..+++++.|++.|+|+.|+|||+++|+|||+|||||||++|+||||.||+|||+|||++||.|++++|++|+.+||.++|
T Consensus 23 ~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n 102 (329)
T 3o47_A 23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFR 102 (329)
T ss_dssp CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-CCCCccccccccHHHHHHHHHHHH
Q 018505 88 VFFKQHGW-TDGGKIEAKYTSRAAELYKQILAK 119 (355)
Q Consensus 88 ~~~e~~g~-~~~~~i~~KY~~raa~~Yr~~l~~ 119 (355)
+||++++. .....+..+|..+++.+|+..+..
T Consensus 103 ~~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~ 135 (329)
T 3o47_A 103 EFLESQEDYDPCWSLQEKYNSRAAALFRDKVVA 135 (329)
T ss_dssp HHHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCccccccchHHHHHhhhccc
Confidence 99999854 445778999999999999998865
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.96 E-value=1.4e-30 Score=256.01 Aligned_cols=84 Identities=42% Similarity=0.777 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHHHH
Q 018505 10 NLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVF 89 (355)
Q Consensus 10 ~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an~~ 89 (355)
+.+++.|++.|+|++|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|+.+||..+|+|
T Consensus 33 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~ 112 (368)
T 3jue_A 33 GHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQI 112 (368)
T ss_dssp CCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 018505 90 FKQH 93 (355)
Q Consensus 90 ~e~~ 93 (355)
|++.
T Consensus 113 ~e~~ 116 (368)
T 3jue_A 113 YEAR 116 (368)
T ss_dssp HTTT
T ss_pred HHhh
Confidence 9976
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.95 E-value=1.1e-29 Score=252.28 Aligned_cols=87 Identities=34% Similarity=0.740 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHH
Q 018505 7 TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 86 (355)
Q Consensus 7 ~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~a 86 (355)
++...+|++|++.|+|+.|+|||+++|+|||+|||||||++||||||+| +|||+||||+||.|++++|++|+.+||..+
T Consensus 19 ~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~ 97 (386)
T 3lju_X 19 KERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAA 97 (386)
T ss_dssp HHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHH
T ss_pred hHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHH
Confidence 3445799999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhhcC
Q 018505 87 QVFFKQHG 94 (355)
Q Consensus 87 n~~~e~~g 94 (355)
|+||+++.
T Consensus 98 ~~~~e~~~ 105 (386)
T 3lju_X 98 RARFESKV 105 (386)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccC
Confidence 99999863
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.93 E-value=5.5e-27 Score=219.88 Aligned_cols=87 Identities=32% Similarity=0.601 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHH
Q 018505 7 TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 86 (355)
Q Consensus 7 ~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~a 86 (355)
+..+++++.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||.||+|||+|||++||.|++.++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 018505 87 QVFFKQH 93 (355)
Q Consensus 87 n~~~e~~ 93 (355)
|+||++.
T Consensus 82 n~i~e~~ 88 (278)
T 1dcq_A 82 NEIMECC 88 (278)
T ss_dssp HHHHTTT
T ss_pred HHHHHhh
Confidence 9999975
No 13
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=1.1e-26 Score=220.54 Aligned_cols=85 Identities=34% Similarity=0.674 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHHHH
Q 018505 9 KNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQV 88 (355)
Q Consensus 9 ~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~an~ 88 (355)
.+++++.|++.|+|+.|+|||+++|+|+|+|||||||++|+|+||.||+|||+|||++||.|++++|.+|..+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 018505 89 FFKQH 93 (355)
Q Consensus 89 ~~e~~ 93 (355)
+|+..
T Consensus 109 i~E~~ 113 (301)
T 2b0o_E 109 VMEAQ 113 (301)
T ss_dssp HHTTT
T ss_pred HHHHh
Confidence 99865
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=2.1e-26 Score=231.66 Aligned_cols=102 Identities=32% Similarity=0.568 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcCChHHH
Q 018505 7 TDKNLVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRA 86 (355)
Q Consensus 7 ~~~~~i~~~L~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~a 86 (355)
+..+++++.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+|||++||.|+++++++|+.+||..+
T Consensus 8 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~a 87 (497)
T 3lvq_E 8 DLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSF 87 (497)
T ss_dssp CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------------CCccccccccH
Q 018505 87 QVFFKQHGWTD--------------GGKIEAKYTSR 108 (355)
Q Consensus 87 n~~~e~~g~~~--------------~~~i~~KY~~r 108 (355)
|.+|+...... ..||++||..+
T Consensus 88 n~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~ 123 (497)
T 3lvq_E 88 NEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEH 123 (497)
T ss_dssp HHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcc
Confidence 99999753211 14788888765
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=88.84 E-value=0.24 Score=34.94 Aligned_cols=39 Identities=33% Similarity=0.777 Sum_probs=33.1
Q ss_pred CCCCCCcCCCCCC-CCeeEeccccccchhchhhhccCCCc
Q 018505 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (355)
Q Consensus 20 p~Nk~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (355)
...+.|.+|+... |.|=.-..|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 4578999999875 89999999999999999888776654
No 16
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=85.98 E-value=0.32 Score=36.55 Aligned_cols=39 Identities=15% Similarity=0.466 Sum_probs=33.2
Q ss_pred CCCCCCCcCCCCCC-CCeeEeccccccchhchhhhccCCC
Q 018505 19 KSENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGV 57 (355)
Q Consensus 19 ~p~Nk~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~ 57 (355)
......|++|+... |.|=.-..|-.||-.|.-.++..|+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 45678999999875 8999999999999999987776554
No 17
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=82.80 E-value=0.52 Score=32.72 Aligned_cols=35 Identities=29% Similarity=0.646 Sum_probs=29.7
Q ss_pred CCCcCCCCCC-CCeeEeccccccchhchhhhccCCC
Q 018505 23 KMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGV 57 (355)
Q Consensus 23 k~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~ 57 (355)
+.|.+|+... |.|=.-..|-.||-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 5799999875 8999999999999999987766554
No 18
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=80.40 E-value=0.84 Score=34.49 Aligned_cols=38 Identities=26% Similarity=0.588 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCCC-CCeeEeccccccchhchhhhccCCC
Q 018505 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGV 57 (355)
Q Consensus 20 p~Nk~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~ 57 (355)
.....|+.|+... |.|-.-..|-.||-.|.-..+..|+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 4568999999865 8999999999999999887776554
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=78.39 E-value=0.78 Score=38.09 Aligned_cols=36 Identities=31% Similarity=0.786 Sum_probs=29.8
Q ss_pred CCCCcCCCCCC-CCeeEeccccccchhchhhhccCCC
Q 018505 22 NKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGV 57 (355)
Q Consensus 22 Nk~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~ 57 (355)
.+.|++||+.. |.|-.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 57899999875 9999999999999999877765444
No 20
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=74.93 E-value=0.81 Score=41.64 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=35.9
Q ss_pred CCCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceeeeccCCCCCHHHHHHHhcC
Q 018505 19 KSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYG 81 (355)
Q Consensus 19 ~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~VkS~~lD~W~~~~l~~m~~g 81 (355)
.|.-..|+.||.+...|.++..|.++|..|...+ .++.+.+..|+..
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l 193 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHA 193 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHH
Confidence 3566799999998777889999999999986432 3567777777543
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=70.23 E-value=1.1 Score=34.33 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=29.7
Q ss_pred CCCCCCcCCCCCC-CCeeE--eccccccchhchhhhccCCCc
Q 018505 20 SENKMCFDCNAKN-PTWAS--VTYGIFLCIDCSAVHRSLGVH 58 (355)
Q Consensus 20 p~Nk~C~DCga~~-P~WaS--v~~GiflC~~CsgiHR~LG~h 58 (355)
.....|..|+... |.|=. -.-| .||-.|.-.++..|++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 3567999999865 89998 6777 8999999888876653
No 22
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=51.63 E-value=3.2 Score=34.37 Aligned_cols=32 Identities=16% Similarity=0.482 Sum_probs=24.6
Q ss_pred CCCCCcCCCCCCC-CeeEeccccccchhchhhh
Q 018505 21 ENKMCFDCNAKNP-TWASVTYGIFLCIDCSAVH 52 (355)
Q Consensus 21 ~Nk~C~DCga~~P-~WaSv~~GiflC~~CsgiH 52 (355)
+.-.|.+||...- .|..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 4567999998643 3345689999999999753
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=49.76 E-value=7.8 Score=32.00 Aligned_cols=39 Identities=15% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCCCCCcCCCCCC-CCeeEeccccccchhchhhhccCCCc
Q 018505 20 SENKMCFDCNAKN-PTWASVTYGIFLCIDCSAVHRSLGVH 58 (355)
Q Consensus 20 p~Nk~C~DCga~~-P~WaSv~~GiflC~~CsgiHR~LG~h 58 (355)
.....|++|+... |.|-.-..|-.||-.|.-..+..|++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 4578999999865 99999999999999999877765554
No 24
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=46.73 E-value=8.9 Score=33.06 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCCCCcCCCCCCCC-eeEeccccccchhchhhhc
Q 018505 20 SENKMCFDCNAKNPT-WASVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 20 p~Nk~C~DCga~~P~-WaSv~~GiflC~~CsgiHR 53 (355)
..-.+|.+||.+=|. -.-.-=++-+|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 566799999987542 2222336789999998763
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=45.31 E-value=8.1 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.769 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCCCCeeEeccccccchhchhhhc
Q 018505 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 21 ~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR 53 (355)
|++.|.-||.+.- ...|||+.|..|.+..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997643 45899999999999876
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=44.67 E-value=16 Score=28.06 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHH-HcCCCCCCCcCCCCCCCCeeEeccccccchhchhh
Q 018505 13 FRKL-KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (355)
Q Consensus 13 ~~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~Csgi 51 (355)
+++| ........|.-||.....+.. .||+.|..|.-.
T Consensus 17 vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 17 VRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 3444 678889999999987777665 599999999754
No 27
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=42.92 E-value=12 Score=29.50 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=26.7
Q ss_pred CCCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 19 KSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 19 ~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.+.+..|.-||.+.- -..||++.|..|.+..|-
T Consensus 4 ~~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 4 GSSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CCSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 356778999997654 458999999999998874
No 28
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=41.94 E-value=11 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.658 Sum_probs=23.7
Q ss_pred CCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 23 k~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
..|.-||.+.- ...|||+.|..|.+..|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 57999997543 458999999999998873
No 29
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=40.13 E-value=12 Score=29.08 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=26.2
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.+...|.-||.+.- ...||++.|..|.+..|-
T Consensus 2 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 2 KETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 35678999997643 568999999999998873
No 30
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=39.20 E-value=11 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.600 Sum_probs=25.8
Q ss_pred CCCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 19 KSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 19 ~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.+.+..|.-||.+. ....||++.|..|.+..|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678999999743 3578999999999998874
No 31
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=38.73 E-value=13 Score=35.70 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCcchhhHHHH-HHHHHcCCCCCCCcCCCCCCCCee-Eeccccccchhchhhhc
Q 018505 1 MASDNLTDKNLV-FRKLKAKSENKMCFDCNAKNPTWA-SVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 1 M~~~~~~~~~~i-~~~L~~~p~Nk~C~DCga~~P~Wa-Sv~~GiflC~~CsgiHR 53 (355)
|+.+...|++.- +.. ....-..|-+||..+|.-+ .-.-|-.+|.+|.-|..
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 1 MMTRESIDKRAGRRGP--NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ------------------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CccHHHHHhcccccCc--cccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 666666666532 222 2222347999999755322 34579999999988763
No 32
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=38.61 E-value=13 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.659 Sum_probs=26.1
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
..+..|.-||.+.- ...|||+.|..|.++.|-
T Consensus 6 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 6 VQEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CCSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 34678999997643 569999999999998873
No 33
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=36.50 E-value=11 Score=30.97 Aligned_cols=34 Identities=21% Similarity=0.616 Sum_probs=24.3
Q ss_pred cCCCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 18 AKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 18 ~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
+.+.+..|.-||.+. ....|||+.|..|.+..|-
T Consensus 5 ~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 5 DEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp -----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 345678899999653 2568999999999998873
No 34
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=35.95 E-value=14 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.711 Sum_probs=25.1
Q ss_pred CCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 21 ~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
....|.-||.+.- ...||++.|..|.+..|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 4678999997643 569999999999998873
No 35
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=35.79 E-value=16 Score=28.47 Aligned_cols=29 Identities=34% Similarity=0.813 Sum_probs=23.3
Q ss_pred CCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 23 k~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
..|.-||.+.- ...||++.|..|.+..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997654 358999999999998873
No 36
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=35.32 E-value=16 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=25.2
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
..+..|.-||.+.-. ..|||+-|..|.+..|-
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999987654 48999999999998763
No 37
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.80 E-value=14 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCCcCCCCCCCCeeEeccccccchhchhhh
Q 018505 23 KMCFDCNAKNPTWASVTYGIFLCIDCSAVH 52 (355)
Q Consensus 23 k~C~DCga~~P~WaSv~~GiflC~~CsgiH 52 (355)
..|.+|+.....+ .-.-|..+|..|.-+-
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCEE
Confidence 4799999866322 3456899999996654
No 38
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=34.53 E-value=16 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.545 Sum_probs=24.2
Q ss_pred CCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 21 ~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
....|.-||.+.- ...||++.|..|.++.|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 3467999997654 458999999999998873
No 39
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=34.16 E-value=5.9 Score=32.62 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=22.7
Q ss_pred CCCCCcCCCCCCC-CeeEeccccccchhchhhhc
Q 018505 21 ENKMCFDCNAKNP-TWASVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 21 ~Nk~C~DCga~~P-~WaSv~~GiflC~~CsgiHR 53 (355)
.-.+|.+||.+=| .-.-+-=++-+|++|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 3579999998754 22222336789999998654
No 40
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=33.40 E-value=15 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.748 Sum_probs=23.3
Q ss_pred CCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 22 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 22 Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
...|.-||.+.- ...||++.|..|.+..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 457999997653 458999999999998874
No 41
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=31.68 E-value=17 Score=28.90 Aligned_cols=32 Identities=22% Similarity=0.586 Sum_probs=24.3
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.....|.-||.+.- ...||++.|..|.+..|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 5 GMVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp ---CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 34568999997653 568999999999998873
No 42
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=30.86 E-value=14 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.723 Sum_probs=25.0
Q ss_pred CCCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 21 ~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.+..|.-||.+.- ...||++.|..|.+..|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4568999997543 358999999999998874
No 43
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=28.57 E-value=13 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.707 Sum_probs=24.6
Q ss_pred CCCCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 22 NKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 22 Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
...|.-||.+.- ...||++.|..|.+..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467999997543 568999999999998874
No 44
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.37 E-value=26 Score=27.47 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=22.9
Q ss_pred CCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 24 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 24 ~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.|.-||.+.- ...||++.|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997543 468999999999998874
No 45
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.37 E-value=21 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.650 Sum_probs=21.5
Q ss_pred CCCCCCcCCCCCCCC-eeEec--cccccchh
Q 018505 20 SENKMCFDCNAKNPT-WASVT--YGIFLCID 47 (355)
Q Consensus 20 p~Nk~C~DCga~~P~-WaSv~--~GiflC~~ 47 (355)
+....|.+|+..+.. |+++. -|-+.|-+
T Consensus 23 ~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 23 KSLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp HTTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 456789999976655 98888 88877743
No 46
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.81 E-value=17 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=20.9
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhh
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~Csgi 51 (355)
-...+|..|++.+ ..|+.-|..|...
T Consensus 12 ~~k~iCpkC~a~~------~~gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCLRCGATN------PWGAKKCRKCGYK 37 (51)
T ss_dssp SSEEECTTTCCEE------CTTCSSCSSSSSC
T ss_pred hCCccCCCCCCcC------CCCceecCCCCCc
Confidence 3567999999984 4799999999654
No 47
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=25.81 E-value=21 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.700 Sum_probs=23.9
Q ss_pred HcCCCCCCCcCCCCCCCCeeEeccccccchhchhhhc
Q 018505 17 KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 17 ~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR 53 (355)
......+.|.-||.+.- ...|||+.|..|.+.-|
T Consensus 24 ~~~~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 24 ASNAPPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ------CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 34456788999998653 45899999999999876
No 48
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=25.53 E-value=27 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=22.5
Q ss_pred CCcCCCCCCCCeeEeccccccchhchhhhcc
Q 018505 24 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 54 (355)
Q Consensus 24 ~C~DCga~~P~WaSv~~GiflC~~CsgiHR~ 54 (355)
.|.-||.+.- ...||++.|..|.+..|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 4888886544 358999999999998873
No 49
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=25.06 E-value=17 Score=36.38 Aligned_cols=30 Identities=20% Similarity=0.732 Sum_probs=24.4
Q ss_pred CCCCCcCCCCCCCCeeEeccccccchhchhhhc
Q 018505 21 ENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53 (355)
Q Consensus 21 ~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR 53 (355)
.++.|.-||.+.-. ..|||.-|..|.+..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 45679999987544 4799999999999887
No 50
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.57 E-value=28 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=25.2
Q ss_pred HcCCCCCCCcCCCCCCCCeeEeccccccchhchhhh
Q 018505 17 KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVH 52 (355)
Q Consensus 17 ~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiH 52 (355)
......-.|..||....- ....|++.|..|-..-
T Consensus 22 ~~q~~~y~Cp~CG~~~v~--r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 22 SEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHHSCEECSSSCCEEEE--EEETTEEEETTTCCEE
T ss_pred HhccccCcCCCCCCccee--ccCCCeEECCCCCCEe
Confidence 556678899999974322 3457999999997653
No 51
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=23.62 E-value=19 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=25.1
Q ss_pred HcCCCCCCCcCCCCCCCCeeEeccccccchhchhh
Q 018505 17 KAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAV 51 (355)
Q Consensus 17 ~~~p~Nk~C~DCga~~P~WaSv~~GiflC~~Csgi 51 (355)
......-.|..||...... +..||+-|..|.-.
T Consensus 55 ~~q~akytCPfCGk~~vKR--~avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 55 SEMNEDHACPNCGEDRVDR--QGTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHSCEECSSSCCEEEEE--EETTEEEETTTCCE
T ss_pred HHhccCCcCCCCCCceeEe--cCceeEECCCCCCE
Confidence 5667788999999754443 34699999999754
No 52
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.96 E-value=36 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=20.0
Q ss_pred CCCCcCCCCCCCCeeEeccccccch
Q 018505 22 NKMCFDCNAKNPTWASVTYGIFLCI 46 (355)
Q Consensus 22 Nk~C~DCga~~P~WaSv~~GiflC~ 46 (355)
...|.+|+.....|+++.-|-+-|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 5689999999888987777766663
No 53
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=22.42 E-value=52 Score=23.86 Aligned_cols=39 Identities=26% Similarity=0.621 Sum_probs=26.9
Q ss_pred CCCCCCcCCCCCCCCeeEeccccccchhchhhhccCCCccceee
Q 018505 20 SENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63 (355)
Q Consensus 20 p~Nk~C~DCga~~P~WaSv~~GiflC~~CsgiHR~LG~hiS~Vk 63 (355)
++-+.|.-||.+.- .-=.||..+|-.|- |.+...|-|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 56789999998643 22389999998885 44445555554
No 54
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.75 E-value=37 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.6
Q ss_pred CCCCCCcCCCCCC-------CC----------eeEeccccccchhchh
Q 018505 20 SENKMCFDCNAKN-------PT----------WASVTYGIFLCIDCSA 50 (355)
Q Consensus 20 p~Nk~C~DCga~~-------P~----------WaSv~~GiflC~~Csg 50 (355)
+.--.|.|||.+- |. -++=.|| .+|-.|..
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 3444799999641 21 3456799 99999975
Done!