BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018506
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 156/299 (52%), Positives = 195/299 (65%), Gaps = 12/299 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 63 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 113
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 114 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 170
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 171 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 230
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 231 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 289
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 294 bits (752), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 156/299 (52%), Positives = 195/299 (65%), Gaps = 12/299 (4%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
MLP+S + ++ Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 85 MLPTSINAIEAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA- 135
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AAK
Sbjct: 136 ---VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAK 192
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPA 287
ICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP+
Sbjct: 193 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 252
Query: 288 SRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
+ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 253 ANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 311
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 167/300 (55%), Gaps = 14/300 (4%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ + FIGLG+ G A+NL+KAGY + V D+ + + G + + + +DVV
Sbjct: 4 KQIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 63
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
I+ LP+S HV +Y +GLL + P L+++ STI P ++R I AA L
Sbjct: 64 ISXLPASQHVEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL---- 116
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G
Sbjct: 117 ------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQ 170
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E
Sbjct: 171 VAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXEN 230
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 231 APASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 290
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 167/300 (55%), Gaps = 14/300 (4%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ + FIGLG+ G A+NL+KAGY + V D+ + + G + + + +DVV
Sbjct: 3 KQIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 62
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
I+ LP+S HV +Y +GLL + P L+++ STI P ++R I AA L
Sbjct: 63 ISXLPASQHVEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL---- 115
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G
Sbjct: 116 ------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQ 169
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E
Sbjct: 170 VAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXEN 229
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+ +DFS V
Sbjct: 230 APASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVV 289
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 157/302 (51%), Gaps = 20/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GFIGLG MG MA NL+K G + D+ + G E +VA ASD++ T
Sbjct: 7 IGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFT 66
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
LP++ V V NGP G+L + +++D S++ P ++ LK K +
Sbjct: 67 SLPNAGIVETVMNGPGGVLSACKA--GTVIVDMSSVSPSST-----------LKMAKVAA 113
Query: 168 ENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
E + +DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A
Sbjct: 114 EKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAV 173
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
KI NNL + +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME
Sbjct: 174 KIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFI 227
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
S ++ GGFA L KDL LAL + KE V P+T+ A I+ G +D S V +
Sbjct: 228 MSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIK 287
Query: 347 HY 348
+
Sbjct: 288 VW 289
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 144/303 (47%), Gaps = 19/303 (6%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ GFIGLG MG MA NL+KAG + + + + + + +G TP EV E+ V
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVT 61
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
ML + +V G +G+L+G R +D ST+DP TS+ I AV + K +
Sbjct: 62 FAMLADPAAAEEVCFGKHGVLEGIGEGRG--YVDMSTVDPATSQRIGVAV---VAKGGR- 115
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 225
L+APVSG AE GTL + G + Y A P F MGK I+ G G GA
Sbjct: 116 ------FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAE 169
Query: 226 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285
K+ N+ M M E L LG+ G++ + ++ + + NP+ + G+
Sbjct: 170 MKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA-------MANPMFALKGGL 222
Query: 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 345
RN+ F K M KDL LA+A VG ++ A +++ G +DFS +F
Sbjct: 223 IRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIF 282
Query: 346 QHY 348
+ Y
Sbjct: 283 KTY 285
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 146/302 (48%), Gaps = 21/302 (6%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
VGFIGLG G + NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 8 VGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 67
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
LP+S HV +V G NG+++G +P +LID S+I P SR IS A+ K
Sbjct: 68 XLPNSPHVKEVALGENGIIEG---AKPGTVLIDXSSIAPLASREISDAL-------KAKG 117
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
E LDAPVSGG A GTL+ VGG + + L + + ++ G G G
Sbjct: 118 VE---XLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVT 174
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N + +A+++ SEALTL G++ + + + A D+ P
Sbjct: 175 KLANQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------XV 227
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
RN+ GF L KDL AL ++ VG PLT+ + L +GH + D S +
Sbjct: 228 XDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALAC 287
Query: 347 HY 348
+Y
Sbjct: 288 YY 289
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 147/301 (48%), Gaps = 24/301 (7%)
Query: 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 107
+GFIGLG G A NL +AG+++ V + ++ S +G ET +V E +D++
Sbjct: 6 LGFIGLGIXGSPXAINLARAGHQLHVTTIGPVADELLS-LGAVNVETARQVTEFADIIFI 64
Query: 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167
+P + V DV G +G + S++ + ++D S+I P ++ + V+ E +
Sbjct: 65 XVPDTPQVEDVLFGEHGCAK--TSLQGKTIVDXSSISPIETKRFAQRVN-----EXGADY 117
Query: 168 ENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227
LDAPVSGG + A GTL+ VGG + + KPLF +GKN GG G+G K
Sbjct: 118 -----LDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCK 172
Query: 228 ICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS--SSARCWSSDSYNPVPGVMEGV 285
+ N + +A+++ VSEAL G + + L +S+R +
Sbjct: 173 VANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXI------- 225
Query: 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 345
+R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S
Sbjct: 226 --NRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAXV 283
Query: 346 Q 346
Q
Sbjct: 284 Q 284
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 142/300 (47%), Gaps = 19/300 (6%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+ GF+GLG MG MA+NL++AG+ + V + N +G +P EV A D+ I
Sbjct: 3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITI 62
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
ML + +V G NG+L+G R ID ST+D +TS I AAV+
Sbjct: 63 AMLADPAAAREVCFGANGVLEGIGGGRG--YIDMSTVDDETSTAIGAAVTA--------- 111
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
L+APVSG AE GTL + G + + A P F ++GK ++ G G GA
Sbjct: 112 -RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARM 170
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ M M + E + LG++ G+ L ++L++ + NP+ +
Sbjct: 171 KLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA-------MANPMFKGKGQML 223
Query: 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 346
S + F K M KDL LA+ +G + A + + + GH +DF+ VF+
Sbjct: 224 LSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFR 283
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 139/284 (48%), Gaps = 24/284 (8%)
Query: 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDV 104
E V FIGLG MG+ MA +L + + + ++ + G ++ P E + V
Sbjct: 1 MEKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARV 58
Query: 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
+ T LP++ V +V L+ G +D+++ +P+ SR ++ L+EK
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKG 108
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
++ LDAPVSGG AEAGTLT M+GG E+A + +P FL+ K ++ G G G
Sbjct: 109 VTY-----LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGH 162
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
A K NN +AV++ E L G+SA +++N+SS R ++++ P +
Sbjct: 163 AVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRA 222
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328
P + FA L+ KDL +A+ PL A+++Y
Sbjct: 223 FPKT------FALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVY 260
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 131/304 (43%), Gaps = 21/304 (6%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ +GF+GLG MG + SNL+K G+ + V + +F G TP EV D+
Sbjct: 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKK 164
+ D+ GP+G+LQG +RP + +D ST+D T ++ + +
Sbjct: 91 FACVSDPKAAKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQVIVS------- 140
Query: 165 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 224
L+APVSG + G L + G Y+ F +MGK + + G GN A
Sbjct: 141 ---RGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAA 197
Query: 225 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284
+ N+ M ++E LTL Q G S TL ILN D +++G
Sbjct: 198 KMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNILQG 255
Query: 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 344
N+ F K + KDL LA+A V P+ + A ++Y + D S V
Sbjct: 256 -----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAV 310
Query: 345 FQHY 348
++ Y
Sbjct: 311 YRAY 314
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 135/283 (47%), Gaps = 24/283 (8%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
E V FIGLG G+ A +L + + + ++ + G ++ P E + V+
Sbjct: 2 EKVAFIGLGAXGYPXAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVI 59
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
T LP++ V +V L+ G +D+++ +P+ SR ++ L+EK
Sbjct: 60 FTCLPTTREVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKGV 109
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 225
++ LDAPVSGG AEAGTLT +GG E+A + +P FL+ K ++ G G G A
Sbjct: 110 TY-----LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGHA 163
Query: 226 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285
K NN +AV++ E L G+SA +++N+SS R ++++ P +
Sbjct: 164 VKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAF 223
Query: 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328
P + FA L+ KDL +A PL A+++Y
Sbjct: 224 PKT------FALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVY 260
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 135/303 (44%), Gaps = 25/303 (8%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
VGF+GLG MG M+ NL+K G+K+ V + + + G E+P EV + I
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
ML L V G+L+ + ID ST+D +TS I+ A++
Sbjct: 83 AMLSDPCAALSVVFDKGGVLE--QICEGKGYIDMSTVDAETSLKINEAITG--------- 131
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+ ++ PVSG AE G L + G + ++ + P F +GK + Y G GNGA
Sbjct: 132 -KGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKM 190
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ M M SE L L G+S+ TL IL+ + NP + +G
Sbjct: 191 KLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT-------NP---MFKGKG 240
Query: 287 ASRN---YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 343
S N Y F K KD+ LALA E V P+ + A + + K G DFS
Sbjct: 241 PSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSA 300
Query: 344 VFQ 346
V +
Sbjct: 301 VIE 303
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 138/316 (43%), Gaps = 30/316 (9%)
Query: 35 FFSSQVPSCQF-ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE 93
F S V S + + F+G G+ G A L +AGY + V + + +G E
Sbjct: 20 FQSXTVESDPYARKITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHE 79
Query: 94 TPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQG-GNSVRP-QLLIDSSTIDPQTSRNI 151
A +D+V++ L + + V DV QG + +P L +D ++I P+ +R+
Sbjct: 80 QARAAARDADIVVSXLENGAVVQDVL-----FAQGVAAAXKPGSLFLDXASITPREARDH 134
Query: 152 SAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMG 211
+A + + LD PVSGG + AE GTL GG ++ + PL G
Sbjct: 135 AARLGALGIAH----------LDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFG 184
Query: 212 KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS--SSARC 269
+ T + G G+G K+ N + +++ V+EAL G + + + + + +R
Sbjct: 185 RAT-HVGPHGSGQLTKLANQXIVGITIGAVAEALLFATKGGADXAKVKEAITGGFADSRV 243
Query: 270 WSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329
V R++ + KD ALA+A+E+G D P+T + +YA
Sbjct: 244 LQLHGQRXV---------ERDFAPRARLSIQLKDXRNALATAQEIGFDAPITGLFEQLYA 294
Query: 330 KLCENGHDSKDFSCVF 345
+ E+G D S +F
Sbjct: 295 EGVEHGLTDLDQSGLF 310
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 43/311 (13%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
E + F+GLGN+G +A L++AGY++ V + + + + +G E + +V
Sbjct: 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIV 65
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
++L + V ++++ G + V + STI P+TSR ++ +
Sbjct: 66 FSVLADDAAVEELFSXELVEKLGKDGVH----VSXSTISPETSRQLA----------QVH 111
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG---GAGN 222
W + AP+ A A + G+ A + KP+ + K G GA N
Sbjct: 112 EWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAAN 171
Query: 223 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS---------SARCWSSD 273
K+ N +A S+ EA T + GIS ++ + L S+ + +S+
Sbjct: 172 --VIKLAGNFXIACSLEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASN 229
Query: 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333
+Y PV F L KD+NL L +A +V P ++ +
Sbjct: 230 TYEPV---------------AFRFPLGLKDINLTLQTASDVNAPXPFADIIRNRFISGLA 274
Query: 334 NGHDSKDFSCV 344
G ++ D+ +
Sbjct: 275 KGRENLDWGAL 285
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 124/281 (44%), Gaps = 17/281 (6%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+G+IGLGNMG MA+ + + + V+D+ M ++ G ++ +VA A + I
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 166
T+L + V +V G + G + I S T + +R++ A
Sbjct: 77 TVL-DDAQVREVVGELAGHAKPGTVIAIHSTI-SDTTAVELARDLKA------------- 121
Query: 167 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226
+ ++DAPVSGG AA G L MVG + Y+ KP F I+ G G G
Sbjct: 122 -RDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRM 180
Query: 227 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286
K+ N+ S EA+ L ++ G+ L +++ + A + + + P
Sbjct: 181 KLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEP 240
Query: 287 ASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQD 326
+ Y ++ L KDL+LALA + V VD PL A +
Sbjct: 241 DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 26/258 (10%)
Query: 97 EVAEASDVVITMLPSSSHVLDVYNGPNG---LLQGGNSVRPQLLIDSSTIDPQTSRNISA 153
E A D ++ ++ +++ V V G +G L + G++V SSTI ++ I+A
Sbjct: 60 EFAGVVDALVILVVNAAQVRQVLFGEDGVAHLXKPGSAVXV-----SSTISSADAQEIAA 114
Query: 154 AVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN 213
A++ L LDAPVSGG + A G T GSE A+ KP+ ++ N
Sbjct: 115 ALTALNLN----------XLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASN 164
Query: 214 TIYCGGA-GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS 272
G G+ KI + L V + +EA L GI ++ ++ W
Sbjct: 165 VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXF 224
Query: 273 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332
+ N V++G +Y A + KDL L +AK + PL S A + +
Sbjct: 225 E--NRXQHVVDG-----DYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSAS 277
Query: 333 ENGHDSKDFSCVFQHYYG 350
G+ +D S V + + G
Sbjct: 278 NAGYGKEDDSAVIKIFSG 295
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 32/232 (13%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+G IGL MG +A N+ GY +AV+ N ++ +D + A+ ++V
Sbjct: 6 HQIGVIGLAVMGKNLALNIESKGYSVAVY----NRLREKTD-------EFLQEAKGKNIV 54
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID---PQTSR-NISAAVSNCILK 161
T S ++ P +L + P +TI+ P + +I N K
Sbjct: 55 GTY--SIEEFVNALEKPRKILLMVKAGAPT----DATIEQLKPHLEKGDIVIDGGNTYFK 108
Query: 162 EKKDSWENPVMLDAPVSG-GVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN---- 213
+ + + L G GV E G L + M GG ++A++ +P+F ++
Sbjct: 109 DTQRRNKELAELGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGE 168
Query: 214 --TIYCGGAGNGAAAKICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 262
T Y G G G K+ +N M ++EA L LG+ A+ L ++
Sbjct: 169 PCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 32/232 (13%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+G IGL MG +A N+ GY +AV+ N ++ +D + A+ ++V
Sbjct: 5 HQIGVIGLAVMGKNLALNIESKGYSVAVY----NRLREKTD-------EFLQEAKGKNIV 53
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID---PQTSR-NISAAVSNCILK 161
T S ++ P +L + P +TI+ P + +I N K
Sbjct: 54 GTY--SIEEFVNALEKPRKILLMVKAGAPT----DATIEQLKPHLEKGDIVIDGGNTYFK 107
Query: 162 EKKDSWENPVMLDAPVSG-GVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN---- 213
+ + + L G GV E G L + M GG ++A++ +P+F ++
Sbjct: 108 DTQRRNKELAELGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDGE 167
Query: 214 --TIYCGGAGNGAAAKICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 262
T Y G G G K+ +N M ++EA L LG+ A+ L ++
Sbjct: 168 PCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 65 MKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS---SSHVLDVY-- 119
++ GYK+ V + +K+F D G+P + T ++ E +D+V+ P ++ ++Y
Sbjct: 45 VEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKP 104
Query: 120 NGPNGLLQGGNSVR 133
+ +LQGG +
Sbjct: 105 HKVKAILQGGEKAK 118
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 22/212 (10%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ +G +G+ MG +A N+ GY ++V + + + K P+ +
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE---F 72
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
+ L + +L + G +S++P L ID + + I + ++
Sbjct: 73 VESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNT-----FFQDTIRRNREL 127
Query: 166 SWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN-------TI 215
S E + VSGG E GTL + M GG ++AY+ P+ +
Sbjct: 128 SAEGFNFIGTGVSGG----EEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVT 183
Query: 216 YCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 247
Y G G G K+ +N M ++EA L
Sbjct: 184 YIGADGAGHYVKMVHNGIEYGDMQLIAEAYAL 215
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 127/334 (38%), Gaps = 85/334 (25%)
Query: 49 GFIGLGNMGFRMASNLMKAGYKMAVH---------------DVNCNVMKMFSDMGVPTKE 93
G +G+ MG +A N+ GY +A++ D N K + V + E
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF-VGSLE 66
Query: 94 TPFEV------AEASDVVI-TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 67 KPRRIMLMVQAGAATDATIKSLLP----LLDI---GDILIDGGNTHFPDTM--------- 110
Query: 147 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAA 203
RN A S + GV E G L + M GG ++AY
Sbjct: 111 -RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLV 153
Query: 204 KPLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGIS 254
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 154 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLS 213
Query: 255 ASTLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLNLALA- 309
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 214 NAEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGK 267
Query: 310 ----SAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339
SA ++GV PL +++ ++A+ D +
Sbjct: 268 WTSESALDLGVPLPLITES--VFARYISTYKDER 299
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 128/333 (38%), Gaps = 83/333 (24%)
Query: 49 GFIGLGNMGFRMASNLMKAGYKMAVHDVNC----NVMKMFSDMG-VPTK---------ET 94
G +G+ MG +A N+ GY +A+++ V K D V TK E
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEK 68
Query: 95 PFEV------AEASDVVI-TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 69 PRRIMLMVQAGAATDATIKSLLP----LLDI---GDILIDGGNTHFPDTM---------- 111
Query: 148 SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAK 204
RN A S + GV E G L + M GG ++AY
Sbjct: 112 RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLVA 155
Query: 205 PLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISA 255
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 156 PIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSN 215
Query: 256 STLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLNLALA-- 309
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 216 AEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKW 269
Query: 310 ---SAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339
SA ++GV PL +++ ++A+ D +
Sbjct: 270 TSESALDLGVPLPLITES--VFARYISTYKDER 300
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 127/334 (38%), Gaps = 85/334 (25%)
Query: 49 GFIGLGNMGFRMASNLMKAGYKMAVH---------------DVNCNVMKMFSDMGVPTKE 93
G +G+ MG +A N+ GY +A++ D N K + V + E
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF-VGSLE 65
Query: 94 TPFEV------AEASDVVI-TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 66 KPRRIMLMVQAGAATDATIKSLLP----LLDI---GDILIDGGNTHFPDTM--------- 109
Query: 147 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAA 203
RN A S + GV E G L + M GG ++AY
Sbjct: 110 -RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLV 152
Query: 204 KPLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGIS 254
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 153 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLS 212
Query: 255 ASTLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLNLALA- 309
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 213 NAEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGK 266
Query: 310 ----SAKEVGVDCPLTSQAQDIYAKLCENGHDSK 339
SA ++GV PL +++ ++A+ D +
Sbjct: 267 WTSESALDLGVPLPLITES--VFARYISTYKDER 298
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 16/209 (7%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ +G +G+ MG +A N+ GY +++ + + + K P+ +
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---F 72
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
+ L + +L + G +S++P L ID + + I + ++
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNT-----FFQDTIRRNREL 127
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN-------TIYCG 218
S E + VSGG A G + M GG ++AY+ P+ + Y G
Sbjct: 128 SAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG 186
Query: 219 GAGNGAAAKICNNLTMAVSMLGVSEALTL 247
G G K+ +N M ++EA +L
Sbjct: 187 ADGAGHYVKMVHNGIEYGDMQLIAEAYSL 215
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 34 RFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE 93
RF+ + + + +VGF+G+G +G MA L G + H+ + +G+ +
Sbjct: 137 RFYGTGLDNA---TVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQV 192
Query: 94 TPFEVAEASDVVITMLPSSSHVLDVYNG 121
E+ +SD ++ LP ++ L + N
Sbjct: 193 ACSELFASSDFILLALPLNADTLHLVNA 220
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+VGF+G+G +G MA L G + H+ + +G+ + E+ +SD ++
Sbjct: 147 TVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFIL 205
Query: 107 TMLPSSSHVLDVYNG 121
LP ++ L + N
Sbjct: 206 LALPLNADTLHLVNA 220
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 16/209 (7%)
Query: 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 105
+ +G +G+ MG +A N+ GY +++ + + + K P+ +
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE---F 72
Query: 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 165
+ L + +L + G +S++P L ID + + I + ++
Sbjct: 73 VESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNT-----FFQDTIRRNREL 127
Query: 166 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKN-------TIYCG 218
S E + VSGG A G + M GG ++AY+ P+ + Y G
Sbjct: 128 SAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIG 186
Query: 219 GAGNGAAAKICNNLTMAVSMLGVSEALTL 247
G G K+ +N M ++EA +L
Sbjct: 187 ADGAGHYVKMVHNGIEYGDMQLIAEAYSL 215
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKETPF--E 97
SVGFIG G + F +A AG +A H D++ + MGV K TP E
Sbjct: 4 SVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KLTPHNKE 60
Query: 98 VAEASDVV 105
+ SDV+
Sbjct: 61 TVQHSDVL 68
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKETPF 96
Q SVGFIG G + F +A AG +A H D++ + MGV K TP
Sbjct: 21 QSMSVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KLTPH 77
Query: 97 --EVAEASDVV 105
E + SDV+
Sbjct: 78 NKETVQHSDVL 88
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 295 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348
F+ K M K ++L L AKE+G+D P + ++I + + +SK VF +Y
Sbjct: 320 FSDKRMKKAISL-LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK--IIVFTNY 370
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKETPF--E 97
SVGFIG G + F +A AG +A H D++ + MGV K TP E
Sbjct: 4 SVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KLTPHNKE 60
Query: 98 VAEASDVV 105
+ SDV+
Sbjct: 61 TVQHSDVL 68
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+VGF+G+G +G MA L G + H + +G+ + E+ +SD ++
Sbjct: 147 TVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGL-RQVACSELFASSDFIL 205
Query: 107 TMLPSSSHVLDVYNG 121
LP ++ L + N
Sbjct: 206 LALPLNADTLHLVNA 220
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106
+VGF+G+G +G MA L G + H + +G+ + E+ +SD ++
Sbjct: 147 TVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGL-RQVACSELFASSDFIL 205
Query: 107 TMLPSSSHVLDVYNG 121
LP ++ L + N
Sbjct: 206 LALPLNADTLHLVNA 220
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 63 NLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVYNG 121
L K G++ V+D+N N ++ G+ + E A+ + L + V+D
Sbjct: 40 RLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLXVPAAVVD---- 95
Query: 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181
LQ P L + ID S + I + + + +D SGG+
Sbjct: 96 --SXLQ---RXTPLLAANDIVIDGGNSH-----YQDDIRRADQXRAQGITYVDVGTSGGI 145
Query: 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSM 210
E G +GG + A + P+F ++
Sbjct: 146 FGLERG-YCLXIGGEKQAVERLDPVFRTL 173
>pdb|1OMO|A Chain A, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
pdb|1OMO|B Chain B, Alanine Dehydrogenase Dimer WBOUND NAD (ARCHAEAL)
Length = 322
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 49 GFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDMGVPTKETPFEVAEAS 102
GFIG G + L + ++ +DV K F D G+ P E A
Sbjct: 129 GFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRC 188
Query: 103 DVVITMLPSSSHVL 116
DV++T PS V+
Sbjct: 189 DVLVTTTPSRKPVV 202
>pdb|1VLL|A Chain A, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
pdb|1VLL|B Chain B, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
Length = 334
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 49 GFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDMGVPTKETPFEVAEAS 102
GFIG G + L + ++ +DV K F D G+ P E A
Sbjct: 141 GFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRC 200
Query: 103 DVVITMLPSSSHVL 116
DV++T PS V+
Sbjct: 201 DVLVTTTPSRKPVV 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,147,087
Number of Sequences: 62578
Number of extensions: 395791
Number of successful extensions: 1183
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 52
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)