Query 018506
Match_columns 355
No_of_seqs 226 out of 2215
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.8E-56 3.8E-61 401.4 33.0 284 46-348 1-285 (286)
2 KOG0409 Predicted dehydrogenas 100.0 2E-54 4.4E-59 379.9 32.3 293 44-354 34-326 (327)
3 PRK15059 tartronate semialdehy 100.0 4.9E-49 1.1E-53 361.9 35.0 287 46-352 1-287 (292)
4 PRK15461 NADH-dependent gamma- 100.0 7.3E-48 1.6E-52 355.7 35.4 288 45-350 1-288 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 3.7E-47 8.1E-52 350.1 33.8 287 50-348 1-287 (288)
6 TIGR01505 tartro_sem_red 2-hyd 100.0 2.6E-44 5.5E-49 332.1 34.2 285 47-350 1-285 (291)
7 PRK11559 garR tartronate semia 100.0 2.8E-44 6E-49 332.8 33.7 287 45-350 2-288 (296)
8 PLN02858 fructose-bisphosphate 100.0 1.7E-44 3.6E-49 385.8 33.9 290 44-350 3-293 (1378)
9 PLN02858 fructose-bisphosphate 100.0 8.3E-43 1.8E-47 372.8 34.5 294 40-350 319-613 (1378)
10 PRK12490 6-phosphogluconate de 100.0 3.3E-41 7.2E-46 311.9 25.9 281 46-352 1-294 (299)
11 PLN02350 phosphogluconate dehy 100.0 7.4E-41 1.6E-45 323.7 28.4 268 43-333 4-299 (493)
12 PRK09599 6-phosphogluconate de 100.0 2.2E-38 4.7E-43 293.5 25.8 280 46-352 1-295 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 1.1E-34 2.4E-39 268.2 24.5 256 46-325 1-266 (298)
14 PTZ00142 6-phosphogluconate de 100.0 4.4E-34 9.5E-39 276.5 26.1 258 45-325 1-284 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 5.3E-33 1.2E-37 269.0 25.0 256 47-325 1-280 (467)
16 TIGR03026 NDP-sugDHase nucleot 100.0 3.4E-32 7.4E-37 262.5 23.7 256 46-331 1-296 (411)
17 PRK09287 6-phosphogluconate de 100.0 4.6E-32 1E-36 261.4 24.3 247 56-325 1-273 (459)
18 PF03446 NAD_binding_2: NAD bi 100.0 8.4E-32 1.8E-36 227.3 15.1 162 45-219 1-163 (163)
19 COG1023 Gnd Predicted 6-phosph 100.0 1.1E-29 2.4E-34 216.2 21.2 262 46-334 1-274 (300)
20 PRK11064 wecC UDP-N-acetyl-D-m 100.0 7E-29 1.5E-33 238.8 27.4 263 43-331 1-295 (415)
21 PRK15182 Vi polysaccharide bio 100.0 7.5E-29 1.6E-33 238.5 25.1 258 45-330 6-292 (425)
22 PRK14618 NAD(P)H-dependent gly 100.0 1.1E-29 2.4E-34 238.4 16.5 285 45-354 4-326 (328)
23 PRK15057 UDP-glucose 6-dehydro 100.0 1.4E-27 3.1E-32 227.0 25.5 248 46-330 1-282 (388)
24 PRK00094 gpsA NAD(P)H-dependen 100.0 1.1E-28 2.4E-33 231.5 17.1 283 45-350 1-324 (325)
25 PRK14619 NAD(P)H-dependent gly 100.0 7.5E-28 1.6E-32 223.8 17.1 260 44-353 3-303 (308)
26 COG1004 Ugd Predicted UDP-gluc 99.9 6E-25 1.3E-29 201.8 24.0 257 46-330 1-293 (414)
27 PRK06129 3-hydroxyacyl-CoA deh 99.9 5.1E-25 1.1E-29 204.8 23.3 266 45-347 2-295 (308)
28 PLN02353 probable UDP-glucose 99.9 1.5E-23 3.2E-28 203.5 27.1 256 45-327 1-302 (473)
29 COG0677 WecC UDP-N-acetyl-D-ma 99.9 4.5E-24 9.7E-29 195.2 20.5 255 46-328 10-298 (436)
30 COG0362 Gnd 6-phosphogluconate 99.9 1.6E-24 3.5E-29 197.1 17.1 259 44-325 2-285 (473)
31 COG0240 GpsA Glycerol-3-phosph 99.9 1.4E-23 3E-28 190.5 18.7 290 45-353 1-326 (329)
32 PRK08229 2-dehydropantoate 2-r 99.9 6.6E-23 1.4E-27 193.6 15.5 265 45-338 2-323 (341)
33 PRK07679 pyrroline-5-carboxyla 99.9 1.3E-22 2.8E-27 186.2 16.5 245 43-335 1-269 (279)
34 PLN02688 pyrroline-5-carboxyla 99.9 3.8E-22 8.2E-27 182.0 18.7 245 46-335 1-264 (266)
35 PRK07531 bifunctional 3-hydrox 99.9 2.1E-21 4.5E-26 191.2 20.8 263 45-346 4-293 (495)
36 PRK12557 H(2)-dependent methyl 99.9 1.3E-20 2.9E-25 176.0 21.7 202 46-263 1-237 (342)
37 KOG2653 6-phosphogluconate deh 99.9 3.9E-21 8.5E-26 172.4 15.5 256 44-325 5-288 (487)
38 PRK09260 3-hydroxybutyryl-CoA 99.9 1.1E-20 2.4E-25 174.1 17.3 190 46-266 2-221 (288)
39 PRK08268 3-hydroxy-acyl-CoA de 99.8 3.7E-20 8.1E-25 182.1 18.9 191 44-267 6-227 (507)
40 PRK12439 NAD(P)H-dependent gly 99.8 6E-20 1.3E-24 172.9 19.4 287 44-352 6-331 (341)
41 PTZ00345 glycerol-3-phosphate 99.8 1.8E-19 4E-24 169.3 21.0 289 43-353 9-358 (365)
42 PF14833 NAD_binding_11: NAD-b 99.8 3E-20 6.5E-25 149.1 9.7 122 221-348 1-122 (122)
43 PRK06130 3-hydroxybutyryl-CoA 99.8 2.4E-19 5.3E-24 167.1 17.2 195 45-267 4-221 (311)
44 PRK14620 NAD(P)H-dependent gly 99.8 4.4E-19 9.5E-24 166.5 19.0 281 46-349 1-325 (326)
45 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 4.2E-19 9E-24 174.2 18.6 250 44-342 4-286 (503)
46 PRK12491 pyrroline-5-carboxyla 99.8 1.3E-18 2.7E-23 158.5 18.1 247 46-335 3-267 (272)
47 PRK06522 2-dehydropantoate 2-r 99.8 1.9E-18 4.2E-23 160.5 19.1 261 46-334 1-300 (304)
48 PRK12921 2-dehydropantoate 2-r 99.8 9E-19 2E-23 162.9 16.4 262 46-333 1-302 (305)
49 TIGR03376 glycerol3P_DH glycer 99.8 1E-18 2.2E-23 163.2 16.2 261 47-329 1-330 (342)
50 PRK07819 3-hydroxybutyryl-CoA 99.8 1.4E-18 3.1E-23 159.4 17.0 254 44-341 4-286 (286)
51 PRK08507 prephenate dehydrogen 99.8 6.9E-18 1.5E-22 154.6 21.4 193 46-264 1-208 (275)
52 COG0345 ProC Pyrroline-5-carbo 99.8 6.2E-18 1.3E-22 151.1 19.6 246 45-335 1-264 (266)
53 PRK07066 3-hydroxybutyryl-CoA 99.8 1.1E-17 2.4E-22 154.8 21.8 201 43-270 5-228 (321)
54 PLN02545 3-hydroxybutyryl-CoA 99.8 1.2E-18 2.6E-23 161.2 15.3 191 45-266 4-223 (295)
55 PRK11199 tyrA bifunctional cho 99.8 9.3E-18 2E-22 159.6 20.1 180 44-260 97-279 (374)
56 PRK07417 arogenate dehydrogena 99.8 2.1E-18 4.7E-23 158.1 15.0 174 46-239 1-187 (279)
57 PRK06249 2-dehydropantoate 2-r 99.8 8.1E-18 1.7E-22 156.9 17.9 260 43-334 3-311 (313)
58 PRK06035 3-hydroxyacyl-CoA deh 99.8 4.9E-18 1.1E-22 156.8 15.8 194 45-266 3-225 (291)
59 PRK08293 3-hydroxybutyryl-CoA 99.8 6.3E-18 1.4E-22 155.7 15.4 195 44-267 2-226 (287)
60 PRK06476 pyrroline-5-carboxyla 99.8 3.2E-17 6.9E-22 148.8 19.4 242 46-332 1-254 (258)
61 PRK07530 3-hydroxybutyryl-CoA 99.8 1.2E-17 2.6E-22 154.4 16.8 191 44-265 3-222 (292)
62 PRK11880 pyrroline-5-carboxyla 99.8 6.3E-17 1.4E-21 147.7 19.3 254 45-335 2-265 (267)
63 PRK05808 3-hydroxybutyryl-CoA 99.8 3.4E-17 7.4E-22 150.5 17.4 195 44-266 2-222 (282)
64 PRK08655 prephenate dehydrogen 99.7 2.1E-16 4.6E-21 153.1 21.2 196 46-262 1-202 (437)
65 PRK05708 2-dehydropantoate 2-r 99.7 1.1E-16 2.4E-21 148.6 16.0 265 45-334 2-299 (305)
66 PRK07680 late competence prote 99.7 3.7E-16 8.1E-21 142.9 18.9 195 46-266 1-206 (273)
67 COG1893 ApbA Ketopantoate redu 99.7 2.2E-16 4.7E-21 145.9 15.8 260 46-334 1-302 (307)
68 PTZ00431 pyrroline carboxylate 99.7 3.6E-16 7.9E-21 141.9 17.0 241 44-335 2-260 (260)
69 PRK06928 pyrroline-5-carboxyla 99.7 4.1E-15 8.9E-20 136.2 19.4 245 45-333 1-265 (277)
70 PRK06545 prephenate dehydrogen 99.7 3.9E-15 8.4E-20 141.3 19.8 196 46-265 1-213 (359)
71 PF03721 UDPG_MGDP_dh_N: UDP-g 99.7 3.8E-16 8.2E-21 134.0 11.5 152 46-206 1-185 (185)
72 PRK07502 cyclohexadienyl dehyd 99.7 6.9E-15 1.5E-19 136.9 19.7 173 43-232 4-192 (307)
73 COG1250 FadB 3-hydroxyacyl-CoA 99.7 3.1E-15 6.8E-20 136.3 16.3 252 44-343 2-285 (307)
74 TIGR01724 hmd_rel H2-forming N 99.7 2.2E-14 4.9E-19 129.5 20.6 158 46-217 1-192 (341)
75 COG2085 Predicted dinucleotide 99.6 3.2E-15 6.8E-20 127.5 12.5 169 45-226 1-187 (211)
76 PRK07634 pyrroline-5-carboxyla 99.6 1.2E-14 2.6E-19 130.8 17.2 197 44-266 3-210 (245)
77 PRK08269 3-hydroxybutyryl-CoA 99.6 3.4E-15 7.4E-20 138.6 13.5 249 56-342 1-283 (314)
78 TIGR01915 npdG NADPH-dependent 99.6 5.5E-15 1.2E-19 130.7 13.5 165 46-226 1-196 (219)
79 TIGR02440 FadJ fatty oxidation 99.6 1.3E-14 2.9E-19 148.3 15.6 254 43-342 302-582 (699)
80 PLN02256 arogenate dehydrogena 99.6 1E-13 2.2E-18 128.0 19.9 170 40-227 31-212 (304)
81 KOG2666 UDP-glucose/GDP-mannos 99.6 9.1E-14 2E-18 123.6 18.3 255 45-326 1-301 (481)
82 PRK11730 fadB multifunctional 99.6 3E-14 6.5E-19 146.0 15.1 195 43-267 311-532 (715)
83 PLN02712 arogenate dehydrogena 99.6 1.8E-13 3.8E-18 138.7 20.4 166 43-226 367-544 (667)
84 PRK11154 fadJ multifunctional 99.6 3.5E-14 7.7E-19 145.5 15.4 253 43-342 307-587 (708)
85 TIGR02441 fa_ox_alpha_mit fatt 99.6 4.9E-14 1.1E-18 144.5 14.8 192 42-263 332-550 (737)
86 TIGR02437 FadB fatty oxidation 99.6 1.2E-13 2.7E-18 141.2 17.5 197 42-267 310-532 (714)
87 COG0287 TyrA Prephenate dehydr 99.5 5.4E-13 1.2E-17 121.1 18.5 172 44-232 2-184 (279)
88 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 1.9E-14 4.1E-19 120.6 6.5 136 47-198 1-155 (157)
89 PF03807 F420_oxidored: NADP o 99.5 6.3E-14 1.4E-18 107.4 7.4 89 47-142 1-95 (96)
90 TIGR00745 apbA_panE 2-dehydrop 99.5 7.1E-13 1.5E-17 122.5 15.8 249 55-332 1-291 (293)
91 PLN02712 arogenate dehydrogena 99.5 3.1E-12 6.7E-17 129.7 20.0 170 43-230 50-231 (667)
92 PF02737 3HCDH_N: 3-hydroxyacy 99.5 6.4E-14 1.4E-18 119.9 6.5 154 47-219 1-179 (180)
93 PRK14806 bifunctional cyclohex 99.5 3E-12 6.5E-17 132.9 19.6 185 45-245 3-202 (735)
94 PRK05479 ketol-acid reductoiso 99.4 4E-12 8.7E-17 117.6 16.7 192 44-258 16-224 (330)
95 KOG2304 3-hydroxyacyl-CoA dehy 99.4 1.4E-12 3E-17 111.1 9.0 254 44-341 10-297 (298)
96 PF10727 Rossmann-like: Rossma 99.4 5.8E-13 1.3E-17 106.5 5.9 102 43-148 8-111 (127)
97 TIGR00465 ilvC ketol-acid redu 99.4 1.9E-11 4.2E-16 113.2 16.0 188 45-265 3-217 (314)
98 PRK08818 prephenate dehydrogen 99.4 3.2E-11 6.9E-16 113.7 17.2 159 45-231 4-167 (370)
99 TIGR00112 proC pyrroline-5-car 99.3 5.5E-11 1.2E-15 107.0 14.8 222 68-332 9-244 (245)
100 KOG3124 Pyrroline-5-carboxylat 99.2 6.2E-10 1.3E-14 97.2 17.5 248 46-335 1-265 (267)
101 PRK07574 formate dehydrogenase 99.2 3E-10 6.5E-15 107.8 14.3 111 43-157 190-300 (385)
102 PLN03139 formate dehydrogenase 99.2 5.8E-10 1.3E-14 105.8 14.9 113 42-158 196-308 (386)
103 KOG2380 Prephenate dehydrogena 99.2 2.5E-09 5.5E-14 96.5 17.2 205 46-270 53-271 (480)
104 PRK06436 glycerate dehydrogena 99.1 2.1E-10 4.5E-15 105.9 10.2 116 32-157 109-225 (303)
105 PF02153 PDH: Prephenate dehyd 99.1 1.6E-09 3.4E-14 98.2 14.5 160 60-236 1-175 (258)
106 PF02826 2-Hacid_dh_C: D-isome 99.1 2.3E-10 4.9E-15 97.9 8.2 121 32-157 20-143 (178)
107 PRK12480 D-lactate dehydrogena 99.1 7.6E-10 1.6E-14 103.6 11.9 108 42-157 143-250 (330)
108 PRK13243 glyoxylate reductase; 99.1 6E-10 1.3E-14 104.5 10.9 109 43-157 148-256 (333)
109 PRK15469 ghrA bifunctional gly 99.1 4.9E-10 1.1E-14 104.0 9.6 119 33-157 124-242 (312)
110 cd01065 NAD_bind_Shikimate_DH 99.0 7.7E-10 1.7E-14 92.3 8.1 105 44-156 18-129 (155)
111 PRK13403 ketol-acid reductoiso 99.0 1.1E-09 2.4E-14 100.1 9.1 194 44-257 15-221 (335)
112 PRK08605 D-lactate dehydrogena 99.0 1.6E-09 3.4E-14 101.8 9.7 108 43-157 144-252 (332)
113 KOG2305 3-hydroxyacyl-CoA dehy 99.0 2.8E-09 6.1E-14 91.2 9.4 201 44-271 2-230 (313)
114 KOG2711 Glycerol-3-phosphate d 99.0 1E-08 2.3E-13 92.9 13.5 279 45-350 21-366 (372)
115 PRK13302 putative L-aspartate 98.9 7.6E-09 1.7E-13 94.3 11.3 106 42-156 3-113 (271)
116 TIGR01327 PGDH D-3-phosphoglyc 98.9 5.2E-09 1.1E-13 104.1 9.9 122 32-158 123-246 (525)
117 PLN02928 oxidoreductase family 98.9 7.7E-09 1.7E-13 97.5 10.5 120 33-157 147-278 (347)
118 COG0111 SerA Phosphoglycerate 98.9 7.8E-09 1.7E-13 96.1 9.6 124 29-157 124-249 (324)
119 PRK13581 D-3-phosphoglycerate 98.9 6.6E-09 1.4E-13 103.4 9.6 120 32-157 125-246 (526)
120 COG4007 Predicted dehydrogenas 98.8 6E-07 1.3E-11 78.4 17.8 198 45-257 1-233 (340)
121 PF00984 UDPG_MGDP_dh: UDP-glu 98.8 1.1E-07 2.4E-12 72.3 11.3 93 221-329 2-94 (96)
122 COG1052 LdhA Lactate dehydroge 98.8 4.6E-08 9.9E-13 91.0 10.7 109 43-157 144-252 (324)
123 PRK11790 D-3-phosphoglycerate 98.8 4.4E-08 9.6E-13 94.4 10.2 116 34-157 138-255 (409)
124 PRK00257 erythronate-4-phospha 98.7 3E-08 6.6E-13 94.1 8.6 106 43-157 114-223 (381)
125 PRK14194 bifunctional 5,10-met 98.7 3.2E-08 6.8E-13 90.3 8.2 76 44-144 158-234 (301)
126 PF02558 ApbA: Ketopantoate re 98.7 1.8E-08 3.9E-13 83.6 6.0 101 48-156 1-115 (151)
127 PRK13304 L-aspartate dehydroge 98.7 9.3E-08 2E-12 87.0 10.5 103 45-156 1-110 (265)
128 PRK06444 prephenate dehydrogen 98.7 3.4E-07 7.4E-12 79.1 13.3 129 46-232 1-134 (197)
129 PF07991 IlvN: Acetohydroxy ac 98.7 4E-08 8.6E-13 80.8 7.1 81 45-127 4-86 (165)
130 PRK15409 bifunctional glyoxyla 98.7 9.7E-08 2.1E-12 89.1 10.6 109 43-157 143-252 (323)
131 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 1.3E-07 2.9E-12 82.2 10.3 92 43-145 26-119 (200)
132 TIGR02853 spore_dpaA dipicolin 98.7 1.1E-07 2.4E-12 87.4 9.9 95 44-147 150-246 (287)
133 PRK08410 2-hydroxyacid dehydro 98.7 1.1E-07 2.4E-12 88.4 9.3 106 43-157 143-248 (311)
134 PRK06932 glycerate dehydrogena 98.6 1.8E-07 4E-12 87.0 9.9 105 43-157 145-249 (314)
135 PRK06487 glycerate dehydrogena 98.6 1.9E-07 4.2E-12 87.1 10.1 104 43-157 146-249 (317)
136 PRK15438 erythronate-4-phospha 98.6 1.5E-07 3.3E-12 89.1 8.6 106 43-157 114-223 (378)
137 KOG0069 Glyoxylate/hydroxypyru 98.6 2.5E-07 5.5E-12 85.3 9.4 109 44-157 161-269 (336)
138 PRK06141 ornithine cyclodeamin 98.6 1.8E-07 3.9E-12 87.2 7.9 101 44-155 124-232 (314)
139 PRK14188 bifunctional 5,10-met 98.6 2.6E-07 5.7E-12 84.5 8.6 76 43-144 156-233 (296)
140 PLN02306 hydroxypyruvate reduc 98.5 6.1E-07 1.3E-11 85.6 10.0 111 43-157 163-288 (386)
141 PRK08306 dipicolinate synthase 98.5 8.7E-07 1.9E-11 81.9 10.7 94 44-146 151-246 (296)
142 PF01408 GFO_IDH_MocA: Oxidore 98.4 5.3E-06 1.1E-10 65.8 11.6 104 46-157 1-111 (120)
143 COG1712 Predicted dinucleotide 98.4 3.6E-06 7.9E-11 72.4 10.9 92 46-144 1-96 (255)
144 cd05213 NAD_bind_Glutamyl_tRNA 98.4 8.2E-07 1.8E-11 82.8 7.5 94 44-142 177-274 (311)
145 PRK06223 malate dehydrogenase; 98.4 1.5E-06 3.2E-11 81.0 8.7 65 45-110 2-79 (307)
146 PF01488 Shikimate_DH: Shikima 98.3 8.6E-07 1.9E-11 72.2 5.7 70 44-113 11-87 (135)
147 PRK14179 bifunctional 5,10-met 98.3 1.6E-06 3.4E-11 78.7 7.5 76 44-144 157-233 (284)
148 TIGR02371 ala_DH_arch alanine 98.3 2.4E-06 5.1E-11 80.1 8.3 92 45-146 128-227 (325)
149 TIGR01763 MalateDH_bact malate 98.3 3.5E-06 7.5E-11 78.2 9.2 66 46-112 2-80 (305)
150 TIGR00507 aroE shikimate 5-deh 98.3 2.8E-06 6.1E-11 77.6 8.5 104 45-156 117-227 (270)
151 COG5495 Uncharacterized conser 98.3 5.5E-05 1.2E-09 65.4 15.5 192 45-257 10-207 (289)
152 TIGR01921 DAP-DH diaminopimela 98.3 1.9E-05 4E-10 73.2 13.5 74 44-119 2-78 (324)
153 COG1748 LYS9 Saccharopine dehy 98.2 1E-05 2.3E-10 76.5 9.3 101 45-155 1-112 (389)
154 PF01113 DapB_N: Dihydrodipico 98.1 9.4E-06 2E-10 65.0 7.8 99 46-153 1-111 (124)
155 PTZ00075 Adenosylhomocysteinas 98.1 1.3E-05 2.9E-10 77.5 10.0 93 43-144 252-344 (476)
156 PRK00048 dihydrodipicolinate r 98.1 1.9E-05 4.2E-10 71.5 9.8 101 45-153 1-104 (257)
157 PRK07340 ornithine cyclodeamin 98.1 2.1E-05 4.5E-10 73.0 10.0 93 44-147 124-223 (304)
158 PLN00203 glutamyl-tRNA reducta 98.1 9.1E-06 2E-10 80.4 7.8 69 44-112 265-340 (519)
159 PRK13301 putative L-aspartate 98.1 2E-05 4.4E-10 70.5 9.3 75 45-121 2-81 (267)
160 TIGR00936 ahcY adenosylhomocys 98.1 3.5E-05 7.7E-10 73.7 11.4 100 44-153 194-295 (406)
161 PRK05476 S-adenosyl-L-homocyst 98.1 2.7E-05 5.8E-10 75.0 10.4 92 44-145 211-303 (425)
162 cd05292 LDH_2 A subgroup of L- 98.1 1.3E-05 2.8E-10 74.6 7.9 67 46-112 1-78 (308)
163 COG0569 TrkA K+ transport syst 98.0 1.4E-05 3.1E-10 70.8 7.6 74 46-120 1-84 (225)
164 PTZ00117 malate dehydrogenase; 98.0 2.3E-05 5.1E-10 73.2 9.2 65 44-109 4-81 (319)
165 COG0059 IlvC Ketol-acid reduct 98.0 2.2E-05 4.8E-10 70.7 8.4 82 44-127 17-100 (338)
166 PLN02494 adenosylhomocysteinas 98.0 4.3E-05 9.3E-10 73.9 10.9 100 44-153 253-354 (477)
167 PF00670 AdoHcyase_NAD: S-aden 98.0 2.1E-05 4.5E-10 65.2 7.4 92 45-146 23-115 (162)
168 cd05297 GH4_alpha_glucosidase_ 98.0 7.6E-06 1.7E-10 79.4 5.3 66 46-111 1-84 (423)
169 PRK05225 ketol-acid reductoiso 98.0 9E-06 2E-10 77.6 5.5 82 43-126 34-121 (487)
170 smart00859 Semialdhyde_dh Semi 98.0 2E-05 4.3E-10 62.9 6.6 93 47-145 1-103 (122)
171 cd05291 HicDH_like L-2-hydroxy 98.0 1.9E-05 4.1E-10 73.5 7.3 67 46-112 1-79 (306)
172 TIGR01035 hemA glutamyl-tRNA r 98.0 1.5E-05 3.3E-10 77.3 6.7 70 44-113 179-252 (417)
173 PRK13303 L-aspartate dehydroge 97.9 9.5E-05 2.1E-09 67.3 11.0 74 45-119 1-78 (265)
174 TIGR02992 ectoine_eutC ectoine 97.9 5.2E-05 1.1E-09 71.2 9.5 68 45-112 129-205 (326)
175 cd00401 AdoHcyase S-adenosyl-L 97.9 7.1E-05 1.5E-09 71.9 10.5 90 44-143 201-291 (413)
176 cd01339 LDH-like_MDH L-lactate 97.9 3.3E-05 7.3E-10 71.6 8.1 62 48-110 1-75 (300)
177 PRK09310 aroDE bifunctional 3- 97.9 6.7E-05 1.5E-09 74.0 10.5 90 44-148 331-423 (477)
178 PF00056 Ldh_1_N: lactate/mala 97.9 1.5E-05 3.2E-10 65.4 4.9 66 46-111 1-79 (141)
179 PRK13940 glutamyl-tRNA reducta 97.9 2.5E-05 5.4E-10 75.4 7.2 71 44-114 180-255 (414)
180 COG0373 HemA Glutamyl-tRNA red 97.9 2.9E-05 6.3E-10 74.0 7.3 69 44-112 177-249 (414)
181 PRK00045 hemA glutamyl-tRNA re 97.9 2.7E-05 5.8E-10 75.8 7.2 70 44-113 181-254 (423)
182 cd01080 NAD_bind_m-THF_DH_Cycl 97.9 6.9E-05 1.5E-09 63.2 8.7 77 43-144 42-119 (168)
183 PF10100 DUF2338: Uncharacteri 97.9 0.0022 4.8E-08 60.3 18.9 281 45-334 1-395 (429)
184 PRK06823 ornithine cyclodeamin 97.9 9.2E-05 2E-09 69.0 10.0 93 44-146 127-227 (315)
185 PRK08618 ornithine cyclodeamin 97.9 8.2E-05 1.8E-09 69.8 9.7 91 45-146 127-226 (325)
186 PRK06046 alanine dehydrogenase 97.9 5.5E-05 1.2E-09 71.0 8.4 92 44-146 128-228 (326)
187 cd01078 NAD_bind_H4MPT_DH NADP 97.8 7.6E-05 1.7E-09 64.6 8.4 95 44-146 27-134 (194)
188 PRK06407 ornithine cyclodeamin 97.8 6E-05 1.3E-09 69.8 8.1 93 44-146 116-217 (301)
189 PRK08291 ectoine utilization p 97.8 6.4E-05 1.4E-09 70.7 8.0 68 45-112 132-208 (330)
190 PRK04148 hypothetical protein; 97.8 0.00011 2.3E-09 59.2 8.0 74 44-118 16-94 (134)
191 PF02423 OCD_Mu_crystall: Orni 97.8 8.1E-05 1.8E-09 69.4 8.5 94 45-146 128-229 (313)
192 KOG0068 D-3-phosphoglycerate d 97.7 8.7E-05 1.9E-09 67.7 7.4 137 15-157 108-252 (406)
193 TIGR00036 dapB dihydrodipicoli 97.7 0.00024 5.2E-09 64.7 10.4 103 45-155 1-114 (266)
194 COG2910 Putative NADH-flavin r 97.7 5.5E-05 1.2E-09 63.4 5.5 65 46-110 1-71 (211)
195 PTZ00082 L-lactate dehydrogena 97.7 7.7E-05 1.7E-09 69.8 7.2 65 44-109 5-82 (321)
196 COG0673 MviM Predicted dehydro 97.7 0.0001 2.2E-09 69.5 8.0 78 43-120 1-86 (342)
197 PRK07589 ornithine cyclodeamin 97.7 0.00017 3.8E-09 67.8 9.1 94 45-146 129-230 (346)
198 TIGR00518 alaDH alanine dehydr 97.7 0.00021 4.5E-09 68.2 9.5 66 45-110 167-239 (370)
199 PRK12549 shikimate 5-dehydroge 97.7 9.7E-05 2.1E-09 67.9 7.0 68 45-112 127-203 (284)
200 PRK00066 ldh L-lactate dehydro 97.7 0.0001 2.3E-09 68.7 7.0 66 45-110 6-82 (315)
201 PF01118 Semialdhyde_dh: Semia 97.7 5.1E-05 1.1E-09 60.5 4.2 89 47-144 1-100 (121)
202 PRK00258 aroE shikimate 5-dehy 97.7 0.00015 3.2E-09 66.6 7.8 69 44-112 122-196 (278)
203 cd00650 LDH_MDH_like NAD-depen 97.6 0.00011 2.4E-09 66.9 6.6 62 48-109 1-78 (263)
204 PRK08300 acetaldehyde dehydrog 97.6 0.00043 9.2E-09 63.6 10.3 93 43-144 2-104 (302)
205 COG2423 Predicted ornithine cy 97.6 0.00031 6.7E-09 65.4 9.1 94 44-147 129-231 (330)
206 PRK09496 trkA potassium transp 97.6 0.00015 3.3E-09 71.2 7.4 67 46-112 1-76 (453)
207 cd05191 NAD_bind_amino_acid_DH 97.6 0.00047 1E-08 51.3 8.1 47 43-115 21-68 (86)
208 PRK11579 putative oxidoreducta 97.5 0.0012 2.7E-08 62.5 12.5 103 45-156 4-112 (346)
209 PRK00436 argC N-acetyl-gamma-g 97.5 0.00026 5.6E-09 66.9 7.8 92 45-146 2-104 (343)
210 PRK06349 homoserine dehydrogen 97.5 0.00074 1.6E-08 65.7 11.0 69 44-112 2-83 (426)
211 TIGR01761 thiaz-red thiazoliny 97.5 0.0017 3.7E-08 61.1 13.1 66 45-111 3-72 (343)
212 PRK15076 alpha-galactosidase; 97.5 0.0001 2.2E-09 71.7 4.9 67 45-111 1-85 (431)
213 PRK14175 bifunctional 5,10-met 97.5 0.00042 9.1E-09 63.2 8.6 77 43-144 156-233 (286)
214 PRK06199 ornithine cyclodeamin 97.5 0.00033 7.1E-09 66.9 7.6 68 45-112 155-234 (379)
215 cd05293 LDH_1 A subgroup of L- 97.5 0.00031 6.7E-09 65.4 7.1 64 45-109 3-79 (312)
216 TIGR01809 Shik-DH-AROM shikima 97.5 0.00031 6.7E-09 64.5 6.9 68 45-112 125-201 (282)
217 TIGR03215 ac_ald_DH_ac acetald 97.5 0.0008 1.7E-08 61.5 9.5 90 46-144 2-98 (285)
218 PLN02819 lysine-ketoglutarate 97.4 0.00085 1.8E-08 71.3 10.6 71 44-114 568-661 (1042)
219 cd00300 LDH_like L-lactate deh 97.4 0.00035 7.6E-09 64.8 6.7 64 48-112 1-77 (300)
220 PRK02318 mannitol-1-phosphate 97.4 0.00046 1E-08 66.2 7.6 109 46-156 1-136 (381)
221 TIGR01850 argC N-acetyl-gamma- 97.4 0.00058 1.3E-08 64.6 8.0 90 46-144 1-102 (346)
222 PRK04207 glyceraldehyde-3-phos 97.3 0.0011 2.3E-08 62.7 9.2 69 45-113 1-90 (341)
223 TIGR02354 thiF_fam2 thiamine b 97.3 0.00059 1.3E-08 59.3 6.7 34 44-77 20-54 (200)
224 PRK03659 glutathione-regulated 97.3 0.0012 2.6E-08 67.2 9.6 76 45-120 400-483 (601)
225 COG4408 Uncharacterized protei 97.3 0.05 1.1E-06 49.9 18.6 284 44-334 3-397 (431)
226 PRK10669 putative cation:proto 97.3 0.0016 3.4E-08 65.9 10.0 74 45-118 417-498 (558)
227 PLN02602 lactate dehydrogenase 97.3 0.00073 1.6E-08 63.8 6.9 63 46-109 38-113 (350)
228 PRK14189 bifunctional 5,10-met 97.3 0.0012 2.7E-08 60.1 8.1 76 44-144 157-233 (285)
229 cd05294 LDH-like_MDH_nadp A la 97.2 0.00081 1.8E-08 62.6 7.1 65 46-111 1-82 (309)
230 cd05290 LDH_3 A subgroup of L- 97.2 0.00054 1.2E-08 63.6 5.8 63 47-109 1-76 (307)
231 PF02254 TrkA_N: TrkA-N domain 97.2 0.0026 5.6E-08 49.9 8.9 67 48-114 1-75 (116)
232 PF13460 NAD_binding_10: NADH( 97.2 0.00078 1.7E-08 57.3 6.3 62 48-111 1-70 (183)
233 PRK00683 murD UDP-N-acetylmura 97.2 0.00082 1.8E-08 65.4 6.8 67 44-110 2-68 (418)
234 PRK14982 acyl-ACP reductase; P 97.2 0.0017 3.7E-08 60.8 8.6 70 43-112 153-226 (340)
235 PRK05086 malate dehydrogenase; 97.2 0.0015 3.2E-08 60.9 8.1 65 46-110 1-78 (312)
236 CHL00194 ycf39 Ycf39; Provisio 97.2 0.0012 2.6E-08 61.6 7.6 65 46-110 1-73 (317)
237 cd05311 NAD_bind_2_malic_enz N 97.2 0.0032 6.9E-08 55.9 9.7 68 44-111 24-107 (226)
238 PF08546 ApbA_C: Ketopantoate 97.2 0.00067 1.5E-08 54.2 4.9 84 236-331 39-124 (125)
239 PRK06270 homoserine dehydrogen 97.1 0.018 3.9E-07 54.5 14.9 68 45-112 2-100 (341)
240 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.0024 5.2E-08 54.3 8.1 32 47-78 1-33 (174)
241 TIGR02356 adenyl_thiF thiazole 97.1 0.0011 2.4E-08 57.8 6.1 36 43-78 19-55 (202)
242 PF03435 Saccharop_dh: Sacchar 97.1 0.0011 2.4E-08 63.8 6.6 65 48-112 1-78 (386)
243 PRK10792 bifunctional 5,10-met 97.1 0.002 4.4E-08 58.6 7.9 76 44-144 158-234 (285)
244 PF02882 THF_DHG_CYH_C: Tetrah 97.1 0.0032 6.9E-08 52.5 8.4 78 43-145 34-112 (160)
245 cd01337 MDH_glyoxysomal_mitoch 97.0 0.0014 3.1E-08 60.8 6.5 65 46-110 1-77 (310)
246 PF01262 AlaDh_PNT_C: Alanine 97.0 0.00092 2E-08 56.5 4.7 94 44-142 19-140 (168)
247 PRK10206 putative oxidoreducta 97.0 0.0023 4.9E-08 60.6 7.8 76 45-120 1-83 (344)
248 PRK06718 precorrin-2 dehydroge 97.0 0.0028 6.1E-08 55.2 7.7 74 44-118 9-86 (202)
249 PRK01710 murD UDP-N-acetylmura 97.0 0.0081 1.8E-07 59.2 11.6 65 45-109 14-85 (458)
250 PRK14192 bifunctional 5,10-met 97.0 0.0027 5.9E-08 58.2 7.5 76 44-144 158-234 (283)
251 PTZ00325 malate dehydrogenase; 96.9 0.0015 3.2E-08 61.0 5.7 70 42-111 5-86 (321)
252 TIGR00561 pntA NAD(P) transhyd 96.9 0.0045 9.8E-08 61.1 9.3 65 45-109 164-255 (511)
253 PRK03562 glutathione-regulated 96.9 0.0031 6.7E-08 64.4 8.4 76 45-120 400-483 (621)
254 PF05368 NmrA: NmrA-like famil 96.9 0.0023 4.9E-08 56.9 6.6 63 48-110 1-73 (233)
255 PLN02968 Probable N-acetyl-gam 96.9 0.0033 7.1E-08 60.2 7.9 92 43-144 36-137 (381)
256 PRK12475 thiamine/molybdopteri 96.9 0.0031 6.7E-08 59.4 7.6 35 44-78 23-58 (338)
257 PRK00141 murD UDP-N-acetylmura 96.9 0.0088 1.9E-07 59.2 11.0 65 44-108 14-81 (473)
258 COG0169 AroE Shikimate 5-dehyd 96.8 0.0031 6.7E-08 57.6 6.9 69 44-112 125-201 (283)
259 KOG2741 Dimeric dihydrodiol de 96.8 0.0065 1.4E-07 56.1 8.9 78 43-120 4-91 (351)
260 PRK08374 homoserine dehydrogen 96.8 0.0093 2E-07 56.2 10.2 22 45-66 2-23 (336)
261 PRK12548 shikimate 5-dehydroge 96.8 0.0049 1.1E-07 56.8 8.0 69 44-112 125-210 (289)
262 TIGR01759 MalateDH-SF1 malate 96.8 0.0026 5.6E-08 59.5 6.2 65 45-109 3-87 (323)
263 PRK00421 murC UDP-N-acetylmura 96.8 0.014 3E-07 57.5 11.6 67 43-109 5-74 (461)
264 PRK01390 murD UDP-N-acetylmura 96.8 0.0049 1.1E-07 60.8 8.2 64 45-108 9-72 (460)
265 PRK14176 bifunctional 5,10-met 96.8 0.0064 1.4E-07 55.4 8.2 76 44-144 163-239 (287)
266 PRK03369 murD UDP-N-acetylmura 96.8 0.015 3.2E-07 57.8 11.5 65 45-109 12-78 (488)
267 PRK05442 malate dehydrogenase; 96.7 0.0022 4.7E-08 60.1 5.2 65 45-109 4-88 (326)
268 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.012 2.5E-07 52.3 9.6 101 43-156 29-149 (227)
269 PRK05671 aspartate-semialdehyd 96.7 0.0023 5E-08 60.1 5.4 91 44-144 3-100 (336)
270 COG0039 Mdh Malate/lactate deh 96.7 0.0021 4.6E-08 59.2 5.0 64 46-109 1-77 (313)
271 PRK05472 redox-sensing transcr 96.7 0.0018 3.9E-08 56.9 4.4 70 44-113 83-158 (213)
272 COG1064 AdhP Zn-dependent alco 96.7 0.009 2E-07 55.7 9.0 75 45-120 167-247 (339)
273 PRK14191 bifunctional 5,10-met 96.7 0.006 1.3E-07 55.6 7.7 76 44-144 156-232 (285)
274 PF13380 CoA_binding_2: CoA bi 96.7 0.003 6.5E-08 49.9 5.0 71 46-122 1-75 (116)
275 cd01483 E1_enzyme_family Super 96.7 0.0063 1.4E-07 49.8 7.2 38 47-84 1-39 (143)
276 cd01338 MDH_choloroplast_like 96.7 0.003 6.4E-08 59.1 5.8 64 46-109 3-86 (322)
277 TIGR01723 hmd_TIGR 5,10-methen 96.7 0.066 1.4E-06 48.1 13.7 114 88-218 126-240 (340)
278 PF00393 6PGD: 6-phosphoglucon 96.7 0.0033 7.1E-08 57.3 5.6 96 223-325 1-106 (291)
279 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.012 2.7E-07 51.7 9.2 70 43-112 21-108 (217)
280 PRK09424 pntA NAD(P) transhydr 96.7 0.0082 1.8E-07 59.4 8.7 46 45-90 165-210 (509)
281 PF02629 CoA_binding: CoA bind 96.6 0.0015 3.3E-08 49.7 2.8 76 44-121 2-81 (96)
282 PRK14027 quinate/shikimate deh 96.6 0.0054 1.2E-07 56.3 7.0 68 45-112 127-205 (283)
283 PRK08644 thiamine biosynthesis 96.6 0.009 1.9E-07 52.5 8.1 35 44-78 27-62 (212)
284 cd00704 MDH Malate dehydrogena 96.6 0.0027 5.9E-08 59.4 5.0 64 46-109 1-84 (323)
285 COG0771 MurD UDP-N-acetylmuram 96.6 0.022 4.8E-07 55.3 11.2 65 44-108 6-76 (448)
286 PRK00961 H(2)-dependent methyl 96.6 0.089 1.9E-06 47.1 13.9 114 88-218 128-242 (342)
287 PLN00112 malate dehydrogenase 96.6 0.0038 8.3E-08 60.5 6.0 66 45-110 100-185 (444)
288 PRK09496 trkA potassium transp 96.6 0.0087 1.9E-07 58.7 8.6 70 43-112 229-308 (453)
289 PRK07688 thiamine/molybdopteri 96.6 0.0091 2E-07 56.3 8.1 42 44-85 23-65 (339)
290 COG0460 ThrA Homoserine dehydr 96.5 0.017 3.8E-07 53.6 9.5 172 43-253 1-197 (333)
291 PRK06719 precorrin-2 dehydroge 96.5 0.0044 9.6E-08 51.7 5.1 67 44-112 12-81 (157)
292 PLN00106 malate dehydrogenase 96.5 0.0041 9E-08 58.1 5.4 65 46-110 19-95 (323)
293 PRK12550 shikimate 5-dehydroge 96.5 0.0091 2E-07 54.5 7.4 65 46-112 123-189 (272)
294 PRK08664 aspartate-semialdehyd 96.5 0.0062 1.4E-07 57.7 6.5 91 44-144 2-110 (349)
295 PRK14106 murD UDP-N-acetylmura 96.5 0.0093 2E-07 58.6 7.9 66 44-109 4-76 (450)
296 TIGR01772 MDH_euk_gproteo mala 96.5 0.0072 1.6E-07 56.2 6.6 64 47-110 1-76 (312)
297 PRK14183 bifunctional 5,10-met 96.4 0.013 2.8E-07 53.4 7.9 76 44-144 156-232 (281)
298 PRK02472 murD UDP-N-acetylmura 96.4 0.032 6.9E-07 54.7 11.4 65 45-109 5-76 (447)
299 COG2344 AT-rich DNA-binding pr 96.4 0.0038 8.1E-08 52.6 3.9 76 43-119 82-163 (211)
300 COG0289 DapB Dihydrodipicolina 96.4 0.031 6.7E-07 50.0 9.9 104 44-155 1-115 (266)
301 cd01336 MDH_cytoplasmic_cytoso 96.4 0.0063 1.4E-07 57.0 5.9 64 46-109 3-86 (325)
302 PF00899 ThiF: ThiF family; I 96.3 0.0062 1.3E-07 49.3 4.9 37 45-81 2-39 (135)
303 PRK14178 bifunctional 5,10-met 96.3 0.014 3.1E-07 53.0 7.4 76 44-144 151-227 (279)
304 PLN00141 Tic62-NAD(P)-related 96.3 0.015 3.2E-07 52.3 7.5 41 44-84 16-57 (251)
305 PF02056 Glyco_hydro_4: Family 96.3 0.0044 9.4E-08 52.8 3.6 65 47-111 1-83 (183)
306 PLN03209 translocon at the inn 96.3 0.019 4.1E-07 57.4 8.6 40 46-85 81-121 (576)
307 PRK12749 quinate/shikimate deh 96.2 0.013 2.8E-07 54.0 6.8 68 45-112 124-207 (288)
308 PRK00676 hemA glutamyl-tRNA re 96.2 0.013 2.8E-07 54.8 6.8 61 43-108 172-233 (338)
309 TIGR01082 murC UDP-N-acetylmur 96.2 0.03 6.5E-07 55.0 9.7 62 47-108 1-65 (448)
310 PRK07236 hypothetical protein; 96.2 0.0075 1.6E-07 57.9 5.4 39 41-79 2-40 (386)
311 PRK11908 NAD-dependent epimera 96.2 0.013 2.9E-07 55.3 6.8 64 45-108 1-75 (347)
312 cd00757 ThiF_MoeB_HesA_family 96.2 0.02 4.4E-07 50.8 7.6 36 44-79 20-56 (228)
313 TIGR01757 Malate-DH_plant mala 96.1 0.01 2.2E-07 56.7 5.9 65 46-110 45-129 (387)
314 cd05212 NAD_bind_m-THF_DH_Cycl 96.1 0.042 9.1E-07 44.8 8.7 77 43-144 26-103 (140)
315 PRK11863 N-acetyl-gamma-glutam 96.1 0.012 2.6E-07 54.6 6.0 81 45-144 2-84 (313)
316 TIGR01771 L-LDH-NAD L-lactate 96.1 0.0074 1.6E-07 55.9 4.6 61 50-110 1-73 (299)
317 PLN02427 UDP-apiose/xylose syn 96.1 0.016 3.4E-07 55.7 7.1 69 41-109 10-94 (386)
318 PF13241 NAD_binding_7: Putati 96.1 0.012 2.5E-07 45.4 5.0 65 44-112 6-71 (103)
319 KOG0399 Glutamate synthase [Am 96.1 0.018 3.9E-07 60.6 7.6 77 33-109 1772-1878(2142)
320 cd01492 Aos1_SUMO Ubiquitin ac 96.0 0.031 6.6E-07 48.5 8.0 35 44-78 20-55 (197)
321 TIGR01470 cysG_Nterm siroheme 96.0 0.033 7.1E-07 48.6 8.1 68 44-112 8-80 (205)
322 PRK02006 murD UDP-N-acetylmura 96.0 0.017 3.6E-07 57.6 7.0 64 45-108 7-76 (498)
323 COG0026 PurK Phosphoribosylami 96.0 0.011 2.5E-07 55.1 5.4 63 45-107 1-68 (375)
324 cd05197 GH4_glycoside_hydrolas 96.0 0.013 2.9E-07 56.8 6.0 65 46-110 1-83 (425)
325 PRK01438 murD UDP-N-acetylmura 96.0 0.02 4.3E-07 56.8 7.4 66 44-109 15-86 (480)
326 TIGR01546 GAPDH-II_archae glyc 96.0 0.023 4.9E-07 53.2 7.2 66 48-113 1-87 (333)
327 PRK12769 putative oxidoreducta 96.0 0.027 5.8E-07 58.1 8.4 35 44-78 326-360 (654)
328 PRK14170 bifunctional 5,10-met 95.9 0.037 7.9E-07 50.5 8.2 76 44-144 156-232 (284)
329 TIGR01758 MDH_euk_cyt malate d 95.9 0.016 3.5E-07 54.3 6.1 63 47-109 1-83 (324)
330 PRK12809 putative oxidoreducta 95.9 0.04 8.6E-07 56.7 9.4 68 44-111 309-405 (639)
331 KOG1502 Flavonol reductase/cin 95.9 0.028 6.1E-07 52.1 7.5 65 44-108 5-85 (327)
332 PRK03803 murD UDP-N-acetylmura 95.9 0.052 1.1E-06 53.3 9.9 63 46-108 7-75 (448)
333 PRK08328 hypothetical protein; 95.9 0.026 5.7E-07 50.2 7.1 43 44-86 26-69 (231)
334 PLN02520 bifunctional 3-dehydr 95.9 0.028 6E-07 56.3 7.9 68 44-111 378-449 (529)
335 COG0190 FolD 5,10-methylene-te 95.9 0.035 7.6E-07 50.2 7.7 77 44-145 155-232 (283)
336 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.049 1.1E-06 46.7 8.1 89 43-144 60-159 (197)
337 PRK12409 D-amino acid dehydrog 95.9 0.011 2.5E-07 57.1 4.9 33 46-78 2-34 (410)
338 PF03447 NAD_binding_3: Homose 95.8 0.019 4.1E-07 45.2 5.3 83 52-143 1-92 (117)
339 PLN02516 methylenetetrahydrofo 95.8 0.041 8.9E-07 50.5 8.1 76 44-144 166-242 (299)
340 PRK06728 aspartate-semialdehyd 95.8 0.015 3.3E-07 54.7 5.4 90 45-144 5-102 (347)
341 TIGR03466 HpnA hopanoid-associ 95.8 0.014 2.9E-07 54.4 5.1 64 46-109 1-72 (328)
342 PLN02383 aspartate semialdehyd 95.8 0.017 3.8E-07 54.5 5.7 92 44-144 6-103 (344)
343 COG4091 Predicted homoserine d 95.8 0.11 2.4E-06 48.1 10.6 186 44-255 16-238 (438)
344 PRK05690 molybdopterin biosynt 95.8 0.029 6.3E-07 50.4 6.9 41 44-84 31-72 (245)
345 TIGR02355 moeB molybdopterin s 95.8 0.026 5.6E-07 50.5 6.5 42 44-85 23-65 (240)
346 PF00070 Pyr_redox: Pyridine n 95.8 0.02 4.3E-07 41.7 4.8 34 47-80 1-34 (80)
347 PLN02695 GDP-D-mannose-3',5'-e 95.8 0.018 3.9E-07 55.1 5.8 67 43-109 19-93 (370)
348 TIGR03649 ergot_EASG ergot alk 95.7 0.018 3.9E-07 52.7 5.5 65 47-111 1-77 (285)
349 cd05298 GH4_GlvA_pagL_like Gly 95.7 0.022 4.8E-07 55.5 6.3 64 46-109 1-82 (437)
350 PRK14874 aspartate-semialdehyd 95.7 0.017 3.8E-07 54.4 5.4 91 45-144 1-97 (334)
351 PRK08762 molybdopterin biosynt 95.7 0.035 7.5E-07 53.2 7.4 35 44-78 134-169 (376)
352 TIGR01087 murD UDP-N-acetylmur 95.7 0.061 1.3E-06 52.5 9.4 62 47-109 1-70 (433)
353 PRK07454 short chain dehydroge 95.7 0.048 1E-06 48.4 8.0 42 44-85 5-47 (241)
354 COG0002 ArgC Acetylglutamate s 95.7 0.038 8.2E-07 51.3 7.3 94 44-146 1-106 (349)
355 PRK05866 short chain dehydroge 95.7 0.074 1.6E-06 49.0 9.4 42 45-86 40-82 (293)
356 cd05296 GH4_P_beta_glucosidase 95.6 0.025 5.5E-07 54.8 6.3 64 46-109 1-83 (419)
357 TIGR01296 asd_B aspartate-semi 95.6 0.012 2.6E-07 55.5 3.9 88 47-143 1-94 (339)
358 COG1090 Predicted nucleoside-d 95.6 0.018 3.9E-07 51.8 4.7 59 52-110 6-65 (297)
359 COG0686 Ald Alanine dehydrogen 95.6 0.013 2.8E-07 53.4 3.9 65 45-109 168-239 (371)
360 PRK08040 putative semialdehyde 95.6 0.015 3.2E-07 54.6 4.5 91 44-144 3-100 (336)
361 PRK12814 putative NADPH-depend 95.6 0.041 9E-07 56.7 8.0 69 43-111 191-288 (652)
362 PRK06753 hypothetical protein; 95.6 0.016 3.5E-07 55.2 4.8 34 46-79 1-34 (373)
363 PRK08223 hypothetical protein; 95.6 0.04 8.6E-07 50.4 7.0 42 44-85 26-68 (287)
364 TIGR02717 AcCoA-syn-alpha acet 95.6 0.072 1.6E-06 52.3 9.3 71 46-122 8-84 (447)
365 PRK11861 bifunctional prephena 95.6 0.16 3.5E-06 52.5 12.3 117 105-236 1-128 (673)
366 PRK05868 hypothetical protein; 95.6 0.017 3.6E-07 55.3 4.8 35 45-79 1-35 (372)
367 PLN02657 3,8-divinyl protochlo 95.6 0.032 6.9E-07 53.8 6.7 38 43-80 58-96 (390)
368 PF03720 UDPG_MGDP_dh_C: UDP-g 95.5 0.016 3.6E-07 44.8 3.8 82 56-143 18-103 (106)
369 TIGR01318 gltD_gamma_fam gluta 95.5 0.063 1.4E-06 53.0 8.8 35 44-78 140-174 (467)
370 PRK04308 murD UDP-N-acetylmura 95.5 0.18 4E-06 49.4 12.0 65 45-109 5-75 (445)
371 COG1486 CelF Alpha-galactosida 95.5 0.026 5.6E-07 54.3 5.7 67 43-109 1-85 (442)
372 PRK06182 short chain dehydroge 95.5 0.053 1.1E-06 49.2 7.7 42 45-86 3-45 (273)
373 PRK00711 D-amino acid dehydrog 95.5 0.018 4E-07 55.7 4.8 34 46-79 1-34 (416)
374 PF13450 NAD_binding_8: NAD(P) 95.5 0.023 5E-07 40.1 4.0 30 50-79 1-30 (68)
375 PRK12771 putative glutamate sy 95.4 0.048 1E-06 55.2 7.8 70 43-112 135-233 (564)
376 PLN02662 cinnamyl-alcohol dehy 95.4 0.062 1.3E-06 49.9 8.0 36 45-80 4-40 (322)
377 PRK02705 murD UDP-N-acetylmura 95.4 0.15 3.2E-06 50.3 10.9 63 47-109 2-76 (459)
378 COG0493 GltD NADPH-dependent g 95.4 0.055 1.2E-06 53.0 7.8 70 43-112 121-219 (457)
379 PRK14573 bifunctional D-alanyl 95.4 0.042 9E-07 58.2 7.4 65 44-108 3-70 (809)
380 TIGR00978 asd_EA aspartate-sem 95.4 0.033 7.1E-07 52.7 5.9 89 46-143 1-106 (341)
381 PRK14173 bifunctional 5,10-met 95.4 0.081 1.8E-06 48.4 8.2 76 44-144 154-230 (287)
382 PRK06598 aspartate-semialdehyd 95.3 0.027 5.9E-07 53.4 5.2 90 45-144 1-101 (369)
383 PRK06153 hypothetical protein; 95.3 0.065 1.4E-06 50.9 7.5 34 45-78 176-210 (393)
384 PRK08163 salicylate hydroxylas 95.3 0.025 5.4E-07 54.4 4.9 35 45-79 4-38 (396)
385 PRK05597 molybdopterin biosynt 95.3 0.076 1.7E-06 50.4 8.1 35 44-78 27-62 (355)
386 PRK12939 short chain dehydroge 95.2 0.084 1.8E-06 46.9 8.0 43 43-85 5-48 (250)
387 PRK14177 bifunctional 5,10-met 95.2 0.1 2.2E-06 47.6 8.3 76 44-144 158-234 (284)
388 PRK14172 bifunctional 5,10-met 95.2 0.093 2E-06 47.8 8.0 76 44-144 157-233 (278)
389 PRK05653 fabG 3-ketoacyl-(acyl 95.2 0.071 1.5E-06 47.1 7.2 41 44-84 4-45 (246)
390 COG1063 Tdh Threonine dehydrog 95.2 0.078 1.7E-06 50.3 7.8 74 47-120 171-257 (350)
391 PRK14186 bifunctional 5,10-met 95.2 0.1 2.2E-06 48.0 8.2 76 44-144 157-233 (297)
392 PRK14169 bifunctional 5,10-met 95.1 0.099 2.2E-06 47.7 8.1 76 44-144 155-231 (282)
393 PRK14166 bifunctional 5,10-met 95.1 0.099 2.1E-06 47.7 8.0 76 44-144 156-232 (282)
394 cd01485 E1-1_like Ubiquitin ac 95.1 0.037 7.9E-07 48.1 5.0 36 44-79 18-54 (198)
395 PRK14180 bifunctional 5,10-met 95.1 0.1 2.2E-06 47.6 8.0 76 44-144 157-233 (282)
396 PLN02897 tetrahydrofolate dehy 95.1 0.09 2E-06 49.1 7.7 76 44-144 213-289 (345)
397 PLN02686 cinnamoyl-CoA reducta 95.1 0.075 1.6E-06 50.8 7.5 43 42-84 50-93 (367)
398 PRK07109 short chain dehydroge 95.1 0.12 2.5E-06 48.7 8.7 43 43-85 6-49 (334)
399 PF01494 FAD_binding_3: FAD bi 95.1 0.029 6.3E-07 52.5 4.6 34 46-79 2-35 (356)
400 PRK14193 bifunctional 5,10-met 95.1 0.11 2.3E-06 47.5 8.0 76 44-144 157-235 (284)
401 PRK06180 short chain dehydroge 95.0 0.11 2.4E-06 47.3 8.3 42 45-86 4-46 (277)
402 PRK07538 hypothetical protein; 95.0 0.029 6.3E-07 54.4 4.6 34 46-79 1-34 (413)
403 PLN00198 anthocyanidin reducta 95.0 0.082 1.8E-06 49.7 7.6 38 43-80 7-45 (338)
404 PRK06019 phosphoribosylaminoim 95.0 0.049 1.1E-06 52.2 6.1 64 45-108 2-70 (372)
405 PRK06392 homoserine dehydrogen 95.0 0.051 1.1E-06 50.9 6.0 66 46-111 1-91 (326)
406 PLN02896 cinnamyl-alcohol dehy 95.0 0.077 1.7E-06 50.2 7.4 42 43-84 8-50 (353)
407 PRK03815 murD UDP-N-acetylmura 95.0 0.038 8.3E-07 53.4 5.3 59 46-108 1-61 (401)
408 cd01489 Uba2_SUMO Ubiquitin ac 95.0 0.092 2E-06 48.8 7.5 38 47-84 1-39 (312)
409 PLN02214 cinnamoyl-CoA reducta 95.0 0.078 1.7E-06 50.1 7.3 66 44-109 9-89 (342)
410 PRK12810 gltD glutamate syntha 95.0 0.097 2.1E-06 51.8 8.2 36 43-78 141-176 (471)
411 PRK14190 bifunctional 5,10-met 94.9 0.12 2.5E-06 47.3 7.9 76 44-144 157-233 (284)
412 PRK06139 short chain dehydroge 94.9 0.12 2.6E-06 48.6 8.4 41 45-85 7-48 (330)
413 PRK12779 putative bifunctional 94.9 0.069 1.5E-06 57.2 7.4 68 44-111 305-402 (944)
414 PRK14187 bifunctional 5,10-met 94.9 0.12 2.6E-06 47.4 7.9 76 44-144 159-235 (294)
415 PRK07588 hypothetical protein; 94.9 0.034 7.5E-07 53.4 4.7 34 46-79 1-34 (391)
416 PRK05678 succinyl-CoA syntheta 94.9 0.2 4.4E-06 46.1 9.4 74 44-121 7-84 (291)
417 PRK05600 thiamine biosynthesis 94.9 0.054 1.2E-06 51.7 5.9 35 44-78 40-75 (370)
418 PRK07364 2-octaprenyl-6-methox 94.8 0.041 9E-07 53.2 5.2 35 45-79 18-52 (415)
419 TIGR03366 HpnZ_proposed putati 94.8 0.14 3.1E-06 46.7 8.4 45 46-90 122-167 (280)
420 PLN02172 flavin-containing mon 94.8 0.047 1E-06 53.8 5.5 37 43-79 8-44 (461)
421 PRK15181 Vi polysaccharide bio 94.8 0.06 1.3E-06 50.9 6.1 37 43-79 13-50 (348)
422 PRK08773 2-octaprenyl-3-methyl 94.8 0.041 9E-07 52.9 5.0 36 43-78 4-39 (392)
423 PRK06847 hypothetical protein; 94.8 0.04 8.7E-07 52.5 4.8 35 45-79 4-38 (375)
424 PRK04663 murD UDP-N-acetylmura 94.8 0.18 3.9E-06 49.4 9.5 63 46-109 8-76 (438)
425 COG0654 UbiH 2-polyprenyl-6-me 94.8 0.032 6.9E-07 53.7 4.1 34 45-78 2-35 (387)
426 TIGR03219 salicylate_mono sali 94.8 0.038 8.2E-07 53.6 4.6 34 46-79 1-35 (414)
427 COG0451 WcaG Nucleoside-diphos 94.8 0.05 1.1E-06 50.2 5.3 64 46-109 1-72 (314)
428 PLN02477 glutamate dehydrogena 94.7 0.19 4E-06 48.6 9.2 92 43-145 204-315 (410)
429 PRK07326 short chain dehydroge 94.7 0.082 1.8E-06 46.7 6.4 41 45-85 6-47 (237)
430 PLN02650 dihydroflavonol-4-red 94.7 0.11 2.5E-06 49.0 7.7 66 44-109 4-85 (351)
431 PRK07411 hypothetical protein; 94.7 0.078 1.7E-06 51.1 6.6 35 44-78 37-72 (390)
432 PRK08849 2-octaprenyl-3-methyl 94.7 0.045 9.6E-07 52.6 4.9 34 45-78 3-36 (384)
433 PRK08017 oxidoreductase; Provi 94.7 0.081 1.7E-06 47.3 6.3 41 46-86 3-44 (256)
434 cd08230 glucose_DH Glucose deh 94.7 0.12 2.5E-06 49.0 7.7 46 45-90 173-221 (355)
435 COG0499 SAM1 S-adenosylhomocys 94.7 0.075 1.6E-06 49.5 5.9 66 46-112 210-275 (420)
436 PRK05872 short chain dehydroge 94.7 0.24 5.1E-06 45.7 9.5 44 43-86 7-51 (296)
437 PRK15116 sulfur acceptor prote 94.7 0.11 2.3E-06 47.3 7.0 37 43-79 28-65 (268)
438 PRK01368 murD UDP-N-acetylmura 94.7 0.092 2E-06 51.7 7.1 63 44-108 5-70 (454)
439 PRK14171 bifunctional 5,10-met 94.6 0.16 3.5E-06 46.5 8.0 76 44-144 158-234 (288)
440 PRK05993 short chain dehydroge 94.6 0.084 1.8E-06 48.1 6.4 42 46-87 5-47 (277)
441 PRK05693 short chain dehydroge 94.6 0.19 4.2E-06 45.5 8.8 41 46-86 2-43 (274)
442 PRK07825 short chain dehydroge 94.6 0.17 3.7E-06 45.8 8.4 41 45-85 5-46 (273)
443 PRK14182 bifunctional 5,10-met 94.6 0.17 3.7E-06 46.1 8.0 76 44-144 156-232 (282)
444 PRK09287 6-phosphogluconate de 94.6 0.24 5.2E-06 48.7 9.6 152 197-352 271-440 (459)
445 KOG1399 Flavin-containing mono 94.6 0.047 1E-06 53.3 4.7 36 44-79 5-40 (448)
446 PRK05884 short chain dehydroge 94.5 0.081 1.8E-06 46.6 5.8 41 46-86 1-42 (223)
447 PRK07878 molybdopterin biosynt 94.5 0.087 1.9E-06 50.8 6.4 35 44-78 41-76 (392)
448 PRK05732 2-octaprenyl-6-methox 94.5 0.047 1E-06 52.4 4.6 35 43-77 1-38 (395)
449 PRK03806 murD UDP-N-acetylmura 94.5 0.46 9.9E-06 46.5 11.6 64 45-109 6-73 (438)
450 PRK12429 3-hydroxybutyrate deh 94.5 0.15 3.3E-06 45.5 7.6 40 46-85 5-45 (258)
451 PRK08013 oxidoreductase; Provi 94.5 0.049 1.1E-06 52.6 4.7 34 46-79 4-37 (400)
452 cd01486 Apg7 Apg7 is an E1-lik 94.5 0.089 1.9E-06 48.3 6.0 32 47-78 1-33 (307)
453 PRK08219 short chain dehydroge 94.5 0.14 3E-06 44.7 7.3 40 45-85 3-43 (227)
454 PLN00093 geranylgeranyl diphos 94.5 0.078 1.7E-06 52.1 6.1 37 43-79 37-73 (450)
455 PRK12826 3-ketoacyl-(acyl-carr 94.5 0.096 2.1E-06 46.5 6.3 41 44-84 5-46 (251)
456 PRK12828 short chain dehydroge 94.4 0.26 5.7E-06 43.3 9.0 69 44-121 6-75 (239)
457 PRK10538 malonic semialdehyde 94.4 0.089 1.9E-06 47.0 6.0 41 46-86 1-42 (248)
458 PRK09880 L-idonate 5-dehydroge 94.4 0.21 4.6E-06 47.0 8.7 46 45-90 170-216 (343)
459 TIGR01214 rmlD dTDP-4-dehydror 94.4 0.081 1.8E-06 48.3 5.7 56 47-110 1-59 (287)
460 cd01484 E1-2_like Ubiquitin ac 94.3 0.16 3.5E-06 45.2 7.3 38 47-84 1-39 (234)
461 PRK06200 2,3-dihydroxy-2,3-dih 94.3 0.22 4.8E-06 44.8 8.4 41 46-86 7-48 (263)
462 PRK08306 dipicolinate synthase 94.3 0.13 2.8E-06 47.6 6.8 64 45-111 2-65 (296)
463 PRK07102 short chain dehydroge 94.3 0.1 2.2E-06 46.4 6.0 41 45-85 1-42 (243)
464 PRK07060 short chain dehydroge 94.3 0.13 2.7E-06 45.7 6.6 43 44-86 8-51 (245)
465 cd01488 Uba3_RUB Ubiquitin act 94.2 0.11 2.4E-06 47.7 6.1 31 47-77 1-32 (291)
466 PRK05867 short chain dehydroge 94.2 0.2 4.3E-06 44.8 7.8 40 46-85 10-50 (253)
467 PRK08703 short chain dehydroge 94.2 0.12 2.7E-06 45.7 6.4 43 42-84 3-46 (239)
468 PRK07045 putative monooxygenas 94.2 0.063 1.4E-06 51.5 4.7 36 44-79 4-39 (388)
469 PRK06475 salicylate hydroxylas 94.2 0.064 1.4E-06 51.8 4.8 34 46-79 3-36 (400)
470 PRK14181 bifunctional 5,10-met 94.2 0.23 5.1E-06 45.4 8.0 76 44-144 152-232 (287)
471 PRK06617 2-octaprenyl-6-methox 94.2 0.059 1.3E-06 51.5 4.5 34 45-78 1-34 (374)
472 PF01266 DAO: FAD dependent ox 94.2 0.068 1.5E-06 50.0 4.8 31 47-77 1-31 (358)
473 TIGR01851 argC_other N-acetyl- 94.2 0.18 3.8E-06 46.7 7.3 81 46-144 2-83 (310)
474 PRK07494 2-octaprenyl-6-methox 94.2 0.062 1.3E-06 51.5 4.6 34 46-79 8-41 (388)
475 KOG0022 Alcohol dehydrogenase, 94.2 0.25 5.4E-06 45.4 8.0 52 46-97 194-246 (375)
476 PRK07774 short chain dehydroge 94.2 0.14 3E-06 45.6 6.6 41 44-84 5-46 (250)
477 TIGR02360 pbenz_hydroxyl 4-hyd 94.1 0.071 1.5E-06 51.4 5.0 34 46-79 3-36 (390)
478 PRK06124 gluconate 5-dehydroge 94.1 0.28 6E-06 43.9 8.6 43 43-85 9-52 (256)
479 PTZ00383 malate:quinone oxidor 94.1 0.1 2.3E-06 51.8 6.2 34 45-78 45-80 (497)
480 PRK14168 bifunctional 5,10-met 94.1 0.24 5.2E-06 45.6 8.0 76 44-144 160-240 (297)
481 PRK13394 3-hydroxybutyrate deh 94.1 0.15 3.2E-06 45.7 6.7 43 43-85 5-48 (262)
482 PRK06057 short chain dehydroge 94.1 0.15 3.2E-06 45.7 6.7 43 43-85 5-48 (255)
483 PRK05854 short chain dehydroge 94.1 0.36 7.8E-06 44.9 9.4 42 44-85 13-55 (313)
484 PLN02989 cinnamyl-alcohol dehy 94.1 0.2 4.2E-06 46.7 7.7 37 45-81 5-42 (325)
485 PRK07478 short chain dehydroge 94.1 0.24 5.3E-06 44.2 8.0 40 46-85 7-47 (254)
486 PLN02852 ferredoxin-NADP+ redu 94.1 0.099 2.2E-06 51.8 5.9 38 42-79 23-62 (491)
487 PRK05875 short chain dehydroge 94.1 0.19 4.1E-06 45.5 7.4 42 44-85 6-48 (276)
488 PRK07890 short chain dehydroge 94.1 0.21 4.6E-06 44.6 7.7 41 45-85 5-46 (258)
489 KOG1683 Hydroxyacyl-CoA dehydr 94.1 0.12 2.6E-06 48.3 5.9 182 56-263 1-206 (380)
490 PLN02616 tetrahydrofolate dehy 94.0 0.22 4.9E-06 46.8 7.8 76 44-144 230-306 (364)
491 PRK12320 hypothetical protein; 94.0 0.087 1.9E-06 54.3 5.5 62 46-110 1-69 (699)
492 TIGR01777 yfcH conserved hypot 94.0 0.072 1.6E-06 48.6 4.6 62 49-110 2-66 (292)
493 COG0665 DadA Glycine/D-amino a 94.0 0.078 1.7E-06 50.6 4.9 35 44-78 3-37 (387)
494 PRK04690 murD UDP-N-acetylmura 94.0 0.12 2.6E-06 51.1 6.3 65 45-109 8-77 (468)
495 COG0300 DltE Short-chain dehyd 94.0 0.16 3.5E-06 45.9 6.5 43 44-86 5-48 (265)
496 PLN02948 phosphoribosylaminoim 94.0 0.18 3.8E-06 51.2 7.6 68 43-110 20-92 (577)
497 PF00743 FMO-like: Flavin-bind 94.0 0.067 1.5E-06 53.6 4.5 34 46-79 2-35 (531)
498 PRK09126 hypothetical protein; 94.0 0.075 1.6E-06 51.0 4.7 35 45-79 3-37 (392)
499 PF04321 RmlD_sub_bind: RmlD s 93.9 0.062 1.4E-06 49.4 4.0 56 46-109 1-59 (286)
500 PRK08132 FAD-dependent oxidore 93.9 0.11 2.3E-06 52.5 5.9 36 44-79 22-57 (547)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.8e-56 Score=401.39 Aligned_cols=284 Identities=41% Similarity=0.659 Sum_probs=268.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+||+|||+|.||.+||.+|.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.++++|+++..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 68999999999999999999999999999999999 66677789999999999999999999999999999999999888
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++++. .+++++||+||++|..++++.+.+.+ . |.+|+|+|++|++..+..|++++|+||+++.+++++
T Consensus 81 ~~~~~--~~G~i~IDmSTisp~~a~~~a~~~~~------~----G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~ 148 (286)
T COG2084 81 LLEGL--KPGAIVIDMSTISPETARELAAALAA------K----GLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAK 148 (286)
T ss_pred hhhcC--CCCCEEEECCCCCHHHHHHHHHHHHh------c----CCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHH
Confidence 88763 37889999999999999999999864 2 389999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|++++|+|+.|+++..|++||++...++++++|++.++++.|+|++.+.++++.+.+.||.++++.+
T Consensus 149 pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~------- 221 (286)
T COG2084 149 PVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP------- 221 (286)
T ss_pred HHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876642
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
++.+++|.|+|.++++.||++++.+++++.|+++|+...+.++|+.+.+.|+|++||+++++.|
T Consensus 222 ~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l 285 (286)
T COG2084 222 RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLL 285 (286)
T ss_pred hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHh
Confidence 3456799999999999999999999999999999999999999999999999999999999976
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2e-54 Score=379.91 Aligned_cols=293 Identities=49% Similarity=0.768 Sum_probs=272.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+.++|||||+|+||++|+.+|.++||+|++|||+.++.+++++.|+.++.+|.|+++++|+||.+||++.++++++.+..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
++++... +.++..||+||+.|.++++|.+.+..+ +..|+|+|++|+...++.|+++||+|||++.++++
T Consensus 114 Gvl~g~~-~g~~~~vDmSTidp~~s~ei~~~i~~~----------~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~ 182 (327)
T KOG0409|consen 114 GVLSGIR-PGKKATVDMSTIDPDTSLEIAKAISNK----------GGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAA 182 (327)
T ss_pred cceeecc-CCCceEEeccccCHHHHHHHHHHHHhC----------CCeEEeccccCCchhhhcCeEEEEecCcHHHHHHH
Confidence 9998633 223344999999999999999988642 37899999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCccc
Q 018506 204 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 283 (355)
Q Consensus 204 ~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 283 (355)
.++|+.+|++++|+|..|.+.+.|+++|++.+..+..++|++.++.+.|+|..+++++++.+ ..|....+++.|++++
T Consensus 183 ~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G--~~~S~~~~~~~p~m~k 260 (327)
T KOG0409|consen 183 SPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG--RCWSSMFYNPVPGMLK 260 (327)
T ss_pred HHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC--CcccHHHhCcCchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999996 4455567788888875
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 018506 284 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 354 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 354 (355)
++|.|+|.++.+.||++++.+.+++.++|+|+...+.++|+...+.|+|+.|++++|+++...++.
T Consensus 261 -----~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 261 -----GDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 489999999999999999999999999999999999999999999999999999999988776654
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.9e-49 Score=361.94 Aligned_cols=287 Identities=34% Similarity=0.516 Sum_probs=260.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCcc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGL 125 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~ 125 (355)
|||||||+|+||.+|+++|.++||+|++|||++. .+.+.+.|+..+.++.++++.+|+||+|+|++.++++++....++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 5899999999999999999999999999999875 577777888888899999999999999999998999999876666
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHH
Q 018506 126 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 205 (355)
Q Consensus 126 l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ 205 (355)
+.. ..++++|||+||+.|.+.+++.+.+.+ . +..|+++|++|++..+..|++.+|+||+++.++++++
T Consensus 80 ~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~------~----G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p 147 (292)
T PRK15059 80 TKA--SLKGKTIVDMSSISPIETKRFARQVNE------L----GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKP 147 (292)
T ss_pred hcc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHH
Confidence 654 236789999999999999999998864 2 3789999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCC
Q 018506 206 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 285 (355)
Q Consensus 206 ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 285 (355)
+|+.++++++|+|+.|+|..+|+++|++....+.+++|++.++++.|+|++++++++..+.+.+|....+.+ +
T Consensus 148 ~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~ 220 (292)
T PRK15059 148 LFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------R 220 (292)
T ss_pred HHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------h
Confidence 999999999999999999999999999999999999999999999999999999999888877887654432 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 286 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 286 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+.+++|.++|+++.+.||++++++++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++.+..
T Consensus 221 ~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~ 287 (292)
T PRK15059 221 MIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA 287 (292)
T ss_pred hhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence 4467999999999999999999999999999999999999999999999999999999999776543
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-48 Score=355.67 Aligned_cols=288 Identities=31% Similarity=0.476 Sum_probs=259.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|+||+|||+|+||.+|+.+|+++||+|++|||++++++.+.+.++..+.++.++++++|+||+|+|++.+++.++....+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence 36899999999999999999999999999999999999999888888899999999999999999998889999887666
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++.. ..+++++||+||+.|.+.+++.+.+.+. ++.|+|+|++|++..+..|++++|+||+++.+++++
T Consensus 81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~----------g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (296)
T PRK15461 81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAK----------GFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERAT 148 (296)
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHH
Confidence 6654 2367899999999999999999888641 378999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.+|.+++++|+.|+|..+|+++|++...++++++|++.++++.|+|++.+++++..+...++..... .+ .
T Consensus 149 p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~--~~----~ 222 (296)
T PRK15461 149 PILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTT--WP----N 222 (296)
T ss_pred HHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcc--cc----c
Confidence 99999999999999999999999999999999999999999999999999999999999876555433221 11 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
++..++|.++|+++.+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++||+++++++.+
T Consensus 223 ~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 223 KVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred hhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 234678999999999999999999999999999999999999999999999999999999998755
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=3.7e-47 Score=350.11 Aligned_cols=287 Identities=49% Similarity=0.823 Sum_probs=261.2
Q ss_pred EEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCC
Q 018506 50 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGG 129 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~ 129 (355)
|||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|+++++++++....++...
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~- 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK- 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc-
Confidence 6899999999999999999999999999999999999888888899999999999999999988899998655455543
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHH
Q 018506 130 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS 209 (355)
Q Consensus 130 ~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~ 209 (355)
..+++++||+||+.|.+.+++.+.+.+ . +.+|+|+|++|++..+..+++++|+||+++.+++++++|+.
T Consensus 80 -~~~g~~vid~st~~p~~~~~~~~~~~~------~----g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~ 148 (288)
T TIGR01692 80 -VAKGSLLIDCSTIDPDSARKLAELAAA------H----GAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGP 148 (288)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHH
Confidence 236789999999999999999988764 2 37899999999999999999999999999999999999999
Q ss_pred cCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCC
Q 018506 210 MGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASR 289 (355)
Q Consensus 210 ~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 289 (355)
+|++++++|+.|+++.+|+++|++.+..+.+++|++.++++.|+|++.+.+++..+.+.+|....+.+.++++...+.++
T Consensus 149 ~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 228 (288)
T TIGR01692 149 MGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228 (288)
T ss_pred hcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999888887665555555544445678
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 290 NYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 290 ~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
+|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.++|+|++|++++++++
T Consensus 229 ~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred CCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999865
No 6
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.6e-44 Score=332.06 Aligned_cols=285 Identities=38% Similarity=0.577 Sum_probs=256.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLL 126 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l 126 (355)
||||||+|.||.+|+.+|+++||+|++|||++++.+.+.+.|...++++.++++++|+||+|+|++.+++.++....+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999988888888999999999999999999888888876544444
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHH
Q 018506 127 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 206 (355)
Q Consensus 127 ~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~l 206 (355)
.. ..++++++|+||..|.+.+++.+.+.+ . +.+|+++|++|++..+..+++.+++||+++.++.++++
T Consensus 81 ~~--~~~g~iivd~st~~~~~~~~l~~~l~~------~----g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 148 (291)
T TIGR01505 81 EG--AKPGKTLVDMSSISPIESKRFAKAVKE------K----GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPL 148 (291)
T ss_pred hc--CCCCCEEEECCCCCHHHHHHHHHHHHH------c----CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHH
Confidence 33 235689999999999998899888764 1 37899999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCC
Q 018506 207 FLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 286 (355)
Q Consensus 207 l~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 286 (355)
|+.++.+++++|+.|.+..+|+++|.+....+.+++|++.++++.|+|++++.+++..+.+.+|......+ ++
T Consensus 149 l~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~ 221 (291)
T TIGR01505 149 FEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RV 221 (291)
T ss_pred HHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hh
Confidence 99999999999999999999999999999999999999999999999999999999988777775543321 23
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 287 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
..++|.++|+++++.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++.+
T Consensus 222 ~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 222 IDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999998765
No 7
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2.8e-44 Score=332.76 Aligned_cols=287 Identities=37% Similarity=0.522 Sum_probs=257.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
+|||+|||+|.||.+++..|++.|++|++|||++++.+.+.+.+...++++.++++++|+||+|+|++..++.++....+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~ 81 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG 81 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence 47899999999999999999999999999999999999998888888889999999999999999998888888765444
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
++.. ..++++|+|+||+.|.+.+++.+.+.+ . +.+|+++|++|++..+..+++.+++||+++.++.++
T Consensus 82 ~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~------~----g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~ 149 (296)
T PRK11559 82 IIEG--AKPGTVVIDMSSIAPLASREIAAALKA------K----GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYY 149 (296)
T ss_pred Hhhc--CCCCcEEEECCCCCHHHHHHHHHHHHH------c----CCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHH
Confidence 4443 236789999999999999999888763 1 378999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccC
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 284 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 284 (355)
++|+.++.+++++|+.|+|+.+|+++|.+.+.++++++|++.++++.|++++++.+++..+.+.++......+ .
T Consensus 150 ~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~--~---- 223 (296)
T PRK11559 150 DLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M---- 223 (296)
T ss_pred HHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch--H----
Confidence 9999999999999999999999999999999999999999999999999999999999988777765543322 2
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 285 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 285 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+..++|.++|+++.+.||++++++++++.|+++|+++.+.++|+.+.+.|+|++||+++++++.+
T Consensus 224 -~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 224 -VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred -hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 23568889999999999999999999999999999999999999999999999999999998765
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.7e-44 Score=385.76 Aligned_cols=290 Identities=23% Similarity=0.394 Sum_probs=265.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+..||||||+|.||.+||.+|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|+|++.++++++.+..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 203 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v 203 (355)
+++... .+++++||+||+.|.+.+++.+.+.+. +. ++.|+|+|++|++..+..|++++|+||+++.++++
T Consensus 83 g~~~~l--~~g~iivd~STi~p~~~~~la~~l~~~-----g~---~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 83 GAAKGL--QKGAVILIRSTILPLQLQKLEKKLTER-----KE---QIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred hHHhcC--CCcCEEEECCCCCHHHHHHHHHHHHhc-----CC---ceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 777653 367899999999999999999988641 10 16799999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcc
Q 018506 204 KPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 282 (355)
Q Consensus 204 ~~ll~~~g~~~~~~-g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 282 (355)
+++|+.+|++++++ |+.|+|..+|+++|++.+.++++++|++.++++.|+|++.++++++.+.+.||....+. +.
T Consensus 153 ~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~--~~-- 228 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHV--PL-- 228 (1378)
T ss_pred HHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhh--hH--
Confidence 99999999998765 88999999999999999999999999999999999999999999999998888766442 22
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 283 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+..++|.++|.++.+.||+++++++|++.|+++|+.+.+.++|+.+.+.|+|+.||+++++.+.+
T Consensus 229 ---~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 229 ---LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999997754
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=8.3e-43 Score=372.76 Aligned_cols=294 Identities=27% Similarity=0.429 Sum_probs=265.2
Q ss_pred CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 40 VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 40 ~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
|.+..+++|||||+|+||.+||.+|+++||+|++|||++++++.+.+.|+..+.++.++++++|+||+|||+++++++++
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVL 398 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHH
Confidence 33334588999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 199 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~ 199 (355)
....+++... .+++++||+||++|.+++++.+.+.+. .. +++|+|+|++|++..+..|++++|+||+++.
T Consensus 399 ~g~~g~~~~l--~~g~ivVd~STvsP~~~~~la~~l~~~----g~----g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~ 468 (1378)
T PLN02858 399 FGDLGAVSAL--PAGASIVLSSTVSPGFVIQLERRLENE----GR----DIKLVDAPVSGGVKRAAMGTLTIMASGTDEA 468 (1378)
T ss_pred hchhhHHhcC--CCCCEEEECCCCCHHHHHHHHHHHHhh----CC----CcEEEEccCCCChhhhhcCCceEEEECCHHH
Confidence 7766666542 367899999999999999998887631 12 3899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCC
Q 018506 200 YQAAKPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPV 278 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~-g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~ 278 (355)
+++++++|+.++.+++++ |+.|+|+.+|+++|++.+.++++++|++.++++.|+|++.++++++.+.+.+|....+.
T Consensus 469 ~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~-- 546 (1378)
T PLN02858 469 LKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRV-- 546 (1378)
T ss_pred HHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhcc--
Confidence 999999999999988874 67999999999999999999999999999999999999999999999988888765432
Q ss_pred CCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 279 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+. +.+++|.++|+++.+.||++++++.+++.|+++|+.+.+.++|+.+.++|+|++|++++++++.+
T Consensus 547 ~~-----~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 547 PH-----MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred ch-----hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 23 34578999999999999999999999999999999999999999999999999999999997754
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=3.3e-41 Score=311.90 Aligned_cols=281 Identities=21% Similarity=0.323 Sum_probs=244.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|+||.+|+.+|.++|++|++|||++++.+.+.+.|...+.+++++++. +|+||+|+|++.++++++..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 58999999999999999999999999999999999999988888888899998866 699999999988889988654
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+ .+++++||+||+.|...+++.+.+.+ . +++|+|+|++|++..+..|+ ++|+||+++++++
T Consensus 81 ~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~ 144 (299)
T PRK12490 81 YPLL-----SPGDIVVDGGNSRYKDDLRRAEELAE------R----GIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDR 144 (299)
T ss_pred hccC-----CCCCEEEECCCCCchhHHHHHHHHHH------c----CCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHH
Confidence 3333 25679999999999999999888754 2 37899999999999999998 8999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.++. +++|+|++|.+..+|+++|++....+++++|++.++++.| +|++.++++++.++ +.+|..+...
T Consensus 145 ~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~ 224 (299)
T PRK12490 145 LEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTV 224 (299)
T ss_pred HHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999997 7899999999999999999999999999999999999999 99999999999643 6666554322
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHhCCCChHHHHHH-HHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~gv~~pi~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
+ .+ .++++ .+.++.+.||+ +++++.+++.|+|+|++..+. .++....++|.|..|.+++.++ |++|
T Consensus 225 ~--~~-----~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-f~~~ 294 (299)
T PRK12490 225 K--AL-----AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQ-FGGH 294 (299)
T ss_pred H--HH-----hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHh-hCCC
Confidence 1 11 12222 35678999998 799999999999999999996 9999999999999999999984 4443
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=7.4e-41 Score=323.73 Aligned_cols=268 Identities=20% Similarity=0.267 Sum_probs=231.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCC---CCCCHHHHhhc---CCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---aDiVi~~v~~~ 112 (355)
..+++|||||+|.||.+||++|+++||+|++|||++++++.+.+. |.. .+.++.|+++. +|+||+|||++
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 456789999999999999999999999999999999999998763 543 67899999876 99999999999
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
+++++|+.+ ++... .++.++||+||+.|..++++.+.+.+ . |++|+++|++|++..+..|+ ++|
T Consensus 84 ~aV~~Vi~g---l~~~l--~~G~iiID~sT~~~~~t~~~~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~im 147 (493)
T PLN02350 84 APVDQTIKA---LSEYM--EPGDCIIDGGNEWYENTERRIKEAAE------K----GLLYLGMGVSGGEEGARNGP-SLM 147 (493)
T ss_pred HHHHHHHHH---HHhhc--CCCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEeCCCcCCHHHhcCCC-eEE
Confidence 999999854 33331 25789999999999999999888764 2 38999999999999999999 999
Q ss_pred ecCCHHHHHHHHHHHHHcCC------CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---H
Q 018506 193 VGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---L 262 (355)
Q Consensus 193 ~gg~~~~~~~v~~ll~~~g~------~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~---~ 262 (355)
+||+++++++++++|+.++. +++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|+|++++.++ +
T Consensus 148 ~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~ 227 (493)
T PLN02350 148 PGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEW 227 (493)
T ss_pred ecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999995 49999999999999999999999999999999999998 59999999998 5
Q ss_pred HhcCCCcccccCCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHhCCCChH-HHHHHHHHHHHHH
Q 018506 263 NSSSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 333 (355)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~gv~~pi-~~~~~~~~~~~~~ 333 (355)
+.+.+.||..+...+. +... +|.++|.++.+.||++ +..+.+.++|+|+|+ .+++.+.+.+..+
T Consensus 228 ~~g~~~S~llei~~~~-------l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 228 NKGELESFLIEITADI-------FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred cCCCccchHHHHHHHH-------HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 5777777766543221 1223 4777899999999999 899999999999999 7777777766544
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.2e-38 Score=293.53 Aligned_cols=280 Identities=21% Similarity=0.317 Sum_probs=237.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..+++++|+++. +|+||+++|++.++++++..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 68999999999999999999999999999999999999988898888899998875 699999999987888887654
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+ .+++++||+||+.|...+++.+.+.+ . ++.|+|+|++|++..+..|. ++|+||+++++++
T Consensus 81 ~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~------~----g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~ 144 (301)
T PRK09599 81 APLL-----SPGDIVIDGGNSYYKDDIRRAELLAE------K----GIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVER 144 (301)
T ss_pred HhhC-----CCCCEEEeCCCCChhHHHHHHHHHHH------c----CCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHH
Confidence 3333 24679999999999999888887754 2 37899999999999999996 8999999999999
Q ss_pred HHHHHHHcCC----CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCcccccCC
Q 018506 203 AKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDSY 275 (355)
Q Consensus 203 v~~ll~~~g~----~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~ 275 (355)
++++|+.++. +++|+|+.|+|..+|+++|.+.+..+.+++|++.++++ .|+|+++++++++.++ ..||.....
T Consensus 145 ~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~ 224 (301)
T PRK09599 145 LEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLT 224 (301)
T ss_pred HHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHH
Confidence 9999999998 89999999999999999999999999999999999999 9999999999999875 566655433
Q ss_pred CCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHhCCCChHHHHHHH-HHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 276 NPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQD-IYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~gv~~pi~~~~~~-~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.+ .+. ++ +.+. +....|| ++++++.+.+.|+++|.+.++.. .+....+.|.|+.|.+++.++ ++
T Consensus 225 ~~---~~~-----~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-fg 293 (301)
T PRK09599 225 AD---ALA-----ED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNG-FG 293 (301)
T ss_pred HH---HHh-----cC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh-cC
Confidence 21 111 11 2232 3344555 58999999999999999999554 588888999999999999985 55
Q ss_pred CC
Q 018506 351 GK 352 (355)
Q Consensus 351 ~~ 352 (355)
++
T Consensus 294 ~h 295 (301)
T PRK09599 294 GH 295 (301)
T ss_pred CC
Confidence 44
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=1.1e-34 Score=268.17 Aligned_cols=256 Identities=23% Similarity=0.359 Sum_probs=215.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh---hcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~---~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||||||+|.||.+|+.+|.++||+|.+|||++++++.+.+.+...+.++.++. +.+|+||+|+|+. .++++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l 79 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEEL 79 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHH
Confidence 689999999999999999999999999999999999999988877777877765 4589999999987 899998765
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.+. ++++|||++|+.|..+.++.+.+.+ . +++|+++|++|++..+..| +.+|+||++++++.
T Consensus 80 ~~~l~-----~g~ivid~st~~~~~t~~~~~~~~~------~----g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~ 143 (298)
T TIGR00872 80 APTLE-----KGDIVIDGGNSYYKDSLRRYKLLKE------K----GIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFAR 143 (298)
T ss_pred HhhCC-----CCCEEEECCCCCcccHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHH
Confidence 44442 5679999999999888888777753 2 3799999999999999999 59999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.++. .++|+|+.|+++.+|+++|.+....+.+++|++.++++. |+|++++.++++.++ ..+|..+...
T Consensus 144 ~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~ 223 (298)
T TIGR00872 144 AEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTA 223 (298)
T ss_pred HHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHH
Confidence 9999999986 589999999999999999999999999999999999998 569999999999886 4777655322
Q ss_pred CCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 277 PVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
. .+. ..++.+.|... ...+|.+.++..+.+.|+|+|.+.+..
T Consensus 224 ~---~~~----~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 224 I---AFR----ESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred H---HHh----cCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 111 12233334433 356778999999999999999999955
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-34 Score=276.48 Aligned_cols=258 Identities=22% Similarity=0.305 Sum_probs=210.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----C--CCCCCCHHHHhh---cCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~aDiVi~~v~~~~~~ 115 (355)
|++|||||+|.||++||.+|+++||+|++|||++++++.+.+. | +..+++++|+++ ++|+||+++++++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 4689999999999999999999999999999999999988763 4 346789999886 489999999999999
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
++++.++.+.+. ++++|||++|+.+..+.+..+.+.+ . |++|+++|++|++..+..|+ ++|+||
T Consensus 81 ~~vi~~l~~~L~-----~g~iIID~gn~~~~dt~~r~~~l~~------~----Gi~fldapVSGG~~gA~~G~-~lm~GG 144 (470)
T PTZ00142 81 DETIDNLLPLLE-----KGDIIIDGGNEWYLNTERRIKRCEE------K----GILYLGMGVSGGEEGARYGP-SLMPGG 144 (470)
T ss_pred HHHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHH------c----CCeEEcCCCCCCHHHHhcCC-EEEEeC
Confidence 999976555443 5679999999999998888877754 2 38999999999999999999 899999
Q ss_pred CHHHHHHHHHHHHHcCCC------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---Hhc
Q 018506 196 SEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~ 265 (355)
+++++++++++|+.++.+ +.|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+
T Consensus 145 ~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g 224 (470)
T PTZ00142 145 NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEG 224 (470)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCC
Confidence 999999999999999987 799999999999999999999999999999999998 7999999999888 467
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCCC-CcchhhHH-----HHH-HHHHHHHHHhCCCChHHHHHH
Q 018506 266 SARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMA-----KDL-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 266 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----kd~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
...||..+..... +.. .|-.. +.-++... |-. +..++.|-++|+|.|++..++
T Consensus 225 ~~~S~l~ei~~~~---~~~----~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 225 ILNSYLIEITAKI---LAK----KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred CccCHHHHHHHHH---hhc----ccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 7777765533211 110 00000 01111110 111 367889999999999887765
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=5.3e-33 Score=269.04 Aligned_cols=256 Identities=21% Similarity=0.298 Sum_probs=206.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhh---cCCEEEEeCCCchHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~aDiVi~~v~~~~~~~~v 118 (355)
+|||||+|.||.+||++|+++||+|++|||++++++.+.+. ++..+.++.++++ .+|+||+|+|+++.++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 49999999999999999999999999999999999998865 2456778888764 689999999998899999
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHH
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSED 198 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~ 198 (355)
+.++.+.+. ++++|||++|+.+..+.+..+.+.+ . +++|+++|++|++..+..|+ ++|+||+++
T Consensus 81 i~~l~~~L~-----~g~iIID~gns~~~~t~~~~~~l~~------~----gi~fvdapVsGG~~gA~~G~-~im~GG~~~ 144 (467)
T TIGR00873 81 INQLLPLLE-----KGDIIIDGGNSHYPDTERRYKELKA------K----GILFVGSGVSGGEEGARKGP-SIMPGGSAE 144 (467)
T ss_pred HHHHHhhCC-----CCCEEEECCCcCHHHHHHHHHHHHh------c----CCEEEcCCCCCCHHHHhcCC-cCCCCCCHH
Confidence 876544442 5679999999998888887776643 2 38999999999999999998 999999999
Q ss_pred HHHHHHHHHHHcCCC------eEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCC
Q 018506 199 AYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSAR 268 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~ 268 (355)
++++++++|+.++.+ ++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...
T Consensus 145 a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~ 224 (467)
T TIGR00873 145 AWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELD 224 (467)
T ss_pred HHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCccc
Confidence 999999999999976 489999999999999999999999999999999985 7999999999999 577777
Q ss_pred cccccCCCCCCCcccCCCCCCCCCCCcchhhHH-----HH-HHHHHHHHHHhCCCChHHHHHH
Q 018506 269 CWSSDSYNPVPGVMEGVPASRNYGGGFASKLMA-----KD-LNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 269 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----kd-~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
||..+...+... + ++-....-++... |- =+..++.|-++|+|.|++....
T Consensus 225 S~l~~~~~~~~~--~-----~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 225 SYLIEITADILK--K-----KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred chHHHhHHHHHh--c-----cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 886654332211 1 0100000011000 11 1367889999999999887654
No 16
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=3.4e-32 Score=262.53 Aligned_cols=256 Identities=18% Similarity=0.207 Sum_probs=203.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.||.++|..|+++||+|++||+++++++.+++. | +..++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 689999999999999999999999999999999999887642 2 45567888888999999
Q ss_pred EEeCCCchH---------HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSSH---------VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~~---------~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|+|++.. +.+++..+.+.+ .++++|+++||++|.+.+++.+.+.+. ..|. ..+.+.|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l-----~~g~lvi~~STv~pgt~~~l~~~~~~~----~~g~---~~~~d~~ 148 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHL-----RKGATVVLESTVPPGTTEEVVKPILER----ASGL---KLGEDFY 148 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhc-----CCCCEEEEeCcCCCCchHHHHHHHHHh----hcCC---CCCCCce
Confidence 999998743 556554433332 256799999999999998887555321 1110 0123334
Q ss_pred CCCChHHHhcCce--------EEEecCCHHHHHHHHHHHHHcC-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 177 VSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 247 (355)
Q Consensus 177 v~g~~~~~~~g~~--------~~~~gg~~~~~~~v~~ll~~~g-~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 247 (355)
+.++|..+..|.. .+++|++++..++++++|+.++ ..++++++++.|+..|+++|.+.+..+++++|+..+
T Consensus 149 v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 149 LAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred EEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 7899999999999999999998 578899999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 248 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 248 a~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
|++.|+|++++.++++.+. ++....|.|| |+..++.||+.++++.+++.|+++|+++++.
T Consensus 229 a~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~ 290 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAR 290 (411)
T ss_pred HHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999987531 0112355665 5678899999999999999999999999988
Q ss_pred HHHHHH
Q 018506 326 DIYAKL 331 (355)
Q Consensus 326 ~~~~~~ 331 (355)
++.+.-
T Consensus 291 ~~N~~~ 296 (411)
T TIGR03026 291 EINDSQ 296 (411)
T ss_pred HHHHHh
Confidence 876644
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=4.6e-32 Score=261.40 Aligned_cols=247 Identities=22% Similarity=0.282 Sum_probs=204.6
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhhc---CCEEEEeCCCchHHHHHhcCCCcccc
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHVLDVYNGPNGLLQ 127 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---aDiVi~~v~~~~~~~~vl~~~~~~l~ 127 (355)
||.+||++|+++||+|.+|||++++++.+.+. ++..+.|++|+++. +|+||+|||++.++++|+.++.+.+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~ 80 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE 80 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999873 47888999999875 89999999999999999965433332
Q ss_pred CCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHH
Q 018506 128 GGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLF 207 (355)
Q Consensus 128 ~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll 207 (355)
++.+|||++|+.|..+++..+.+.+ . |++|+++|++|++..+..|+ ++|+||+++++++++++|
T Consensus 81 -----~GdiiID~gn~~~~~t~~~~~~l~~------~----Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL 144 (459)
T PRK09287 81 -----KGDIIIDGGNSNYKDTIRREKELAE------K----GIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPIL 144 (459)
T ss_pred -----CCCEEEECCCCCHHHHHHHHHHHHh------c----CCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHH
Confidence 5679999999999999998888754 2 38999999999999999998 999999999999999999
Q ss_pred HHcCCCe-------EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCcccccCCC
Q 018506 208 LSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSYN 276 (355)
Q Consensus 208 ~~~g~~~-------~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~ 276 (355)
+.++.++ .|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||..+...
T Consensus 145 ~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~ 224 (459)
T PRK09287 145 EKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITA 224 (459)
T ss_pred HHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHh
Confidence 9999876 89999999999999999999999999999999999 5999999999998 57777787665433
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHH------H-HHHHHHHHHhCCCChHHHHHH
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKD------L-NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd------~-~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+. +..+++..+..+-....| . ...++.|-++|+|.|++....
T Consensus 225 ~~-------l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 225 DI-------LRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred HH-------HhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 21 123344222211111111 1 366889999999999877644
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.98 E-value=8.4e-32 Score=227.31 Aligned_cols=162 Identities=44% Similarity=0.704 Sum_probs=141.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
||||||||+|.||++||++|.++||+|++|||++++.+++.+.|+..++|+.|+++++|+||+|+|++.++++++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 204 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~ 204 (355)
+++. ..+++++||+||.+|.+.+++.+.+.+ . +++|+|+|++|++..+..|++++|+||+++++++++
T Consensus 80 i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~------~----g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~ 147 (163)
T PF03446_consen 80 ILAG--LRPGKIIIDMSTISPETSRELAERLAA------K----GVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVR 147 (163)
T ss_dssp HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHH------T----TEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHH
T ss_pred Hhhc--cccceEEEecCCcchhhhhhhhhhhhh------c----cceeeeeeeecccccccccceEEEccCCHHHHHHHH
Confidence 5554 237899999999999999999998864 2 389999999999999999999999999999999999
Q ss_pred HHHHHcCCCeE-EeCC
Q 018506 205 PLFLSMGKNTI-YCGG 219 (355)
Q Consensus 205 ~ll~~~g~~~~-~~g~ 219 (355)
++|+.++.+++ ++|+
T Consensus 148 ~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 148 PLLEAMGKNVYHYVGP 163 (163)
T ss_dssp HHHHHHEEEEEEE-ES
T ss_pred HHHHHHhCCceeeeCc
Confidence 99999999988 4475
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=216.21 Aligned_cols=262 Identities=25% Similarity=0.395 Sum_probs=212.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh---hcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~---~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+||+||+|.||..|+.+|.+.||+|++||+|++.++++...+++.++|+.+.+ ....+|.++||..+.+.++++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 789999999999999999999999999999999999999999999999988876 46899999999988999999998
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 202 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~ 202 (355)
.+.++ ++.+|||-.+.......+..+.+.+ . +++|+|+..+|+...+..|- .+|+|||+++++.
T Consensus 81 a~~L~-----~GDivIDGGNS~y~Ds~rr~~~l~~------k----gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~ 144 (300)
T COG1023 81 APLLS-----AGDIVIDGGNSNYKDSLRRAKLLAE------K----GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVER 144 (300)
T ss_pred HhhcC-----CCCEEEECCccchHHHHHHHHHHHh------c----CCeEEeccCCCCchhhhcCc-eEEecCcHHHHHH
Confidence 88886 4569999999988877777666653 2 49999999999999999998 8999999999999
Q ss_pred HHHHHHHcCC---CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCcccccCCC
Q 018506 203 AKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSYN 276 (355)
Q Consensus 203 v~~ll~~~g~---~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~ 276 (355)
++++|+.+.. -+.|+|+.|+++.+||++|.+.+.++++++|.+.+.++.. +|.+++.++.+.++ -.||..+...
T Consensus 145 ~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~ 224 (300)
T COG1023 145 LEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTA 224 (300)
T ss_pred HHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999975 4679999999999999999999999999999999988765 67899999999987 4678654321
Q ss_pred CCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 277 PVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
. .++..+.-.++.. ...|. ++.++.+-+.|+|.|++..+. +.+..++
T Consensus 225 ~---Af~~d~~L~q~~g------~v~dSGEGrWTv~~aldlgvpaPVia~al--~~Rf~S~ 274 (300)
T COG1023 225 E---AFKKDPDLDQISG------RVSDSGEGRWTVEEALDLGVPAPVIALAL--MMRFRSR 274 (300)
T ss_pred H---HHhhCCCHHHhcC------eeccCCCceeehHHHHhcCCCchHHHHHH--HHHHhcc
Confidence 1 0110000001100 00011 245888999999999987765 4444444
No 20
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.97 E-value=7e-29 Score=238.77 Aligned_cols=263 Identities=16% Similarity=0.181 Sum_probs=200.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC-CCHHHH---------------hhcCCEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK-ETPFEV---------------AEASDVVI 106 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~aDiVi 106 (355)
|.+|||+|||+|.||.++|.+|+++||+|++||+++++++.++....... ..+++. .+++|+||
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 34689999999999999999999999999999999999998764332221 122222 23799999
Q ss_pred EeCCCc---------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhh----hccCCCCCceEE
Q 018506 107 TMLPSS---------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILK----EKKDSWENPVML 173 (355)
Q Consensus 107 ~~v~~~---------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~----~~~g~~~~~~~~ 173 (355)
+|+|++ ..+.+++..+.+.+ .++++||++||++|.+++++...+.+.... ..+|....+.+.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l-----~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~ 155 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVL-----KKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIA 155 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhC-----CCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEE
Confidence 999987 56666665543333 256899999999999999998877542110 001111236788
Q ss_pred eCC--CCCChHHHhcCceEEEecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 174 DAP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 174 ~~p--v~g~~~~~~~g~~~~~~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
.+| +..+........+..++|| +++.+++++++|+.++..+++++++++|+..|+++|.+.+..+++++|+..+|++
T Consensus 156 ~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~ 235 (415)
T PRK11064 156 YCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAD 235 (415)
T ss_pred ECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899 5555555556666778888 9999999999999999888899999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 251 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
.|+|.+++.++++.... . ..+ .-++||+..|+.||..++.+ +.+.+++++++++++-+.
T Consensus 236 ~GiD~~~v~~~~~~~~r---i-~~l--------------~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~ 294 (415)
T PRK11064 236 QGINVWELIRLANRHPR---V-NIL--------------QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDG 294 (415)
T ss_pred hCCCHHHHHHHhccCCC---c-ccC--------------CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHH
Confidence 99999999999875321 1 111 11356788999999988754 556678888888766554
Q ss_pred H
Q 018506 331 L 331 (355)
Q Consensus 331 ~ 331 (355)
-
T Consensus 295 ~ 295 (415)
T PRK11064 295 K 295 (415)
T ss_pred h
Confidence 3
No 21
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.97 E-value=7.5e-29 Score=238.45 Aligned_cols=258 Identities=14% Similarity=0.165 Sum_probs=196.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC----------------CCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~aDiVi~~ 108 (355)
.|||||||+|+||.++|.+|++ ||+|++||+++++++.+++ |.. .+++..++++++|++|+|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~-G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKN-GVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHC-cCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 4899999999999999999888 6999999999999999983 322 344555678899999999
Q ss_pred CCCc------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC--CCCceEEeCCC--C
Q 018506 109 LPSS------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS--WENPVMLDAPV--S 178 (355)
Q Consensus 109 v~~~------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~--~~~~~~~~~pv--~ 178 (355)
||+| .+++.++....++.+.. .++++||+.||+.|.+++++.+...+. ..|. ...+....+|. .
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l--~~g~lVI~~STv~pgtt~~~~~~~l~~----~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVL--NRGDIVVYESTVYPGCTEEECVPILAR----MSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhc--CCCCEEEEecCCCCcchHHHHHHHHHh----ccCCCcCCCeeEeeCCCcCC
Confidence 9998 34455555444444432 257899999999999998765444321 1111 11233444443 3
Q ss_pred CChHHHhcCc-eEEEecCCHHHHHHHHHHHHHcC-CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 179 GGVLAAEAGT-LTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 179 g~~~~~~~g~-~~~~~gg~~~~~~~v~~ll~~~g-~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
++........ ..++.|++++..+.++++++.+. ..+++++++++|+..|+++|.+.++.+++++|+..+|++.|+|.+
T Consensus 158 ~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~ 237 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTE 237 (425)
T ss_pred CCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 4433333333 34666778888899999999986 347889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
++.+++... |... .+.|| ++..|..||..+++..+++.|++++++++++++-+.
T Consensus 238 ~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 238 AVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred HHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999996532 2111 23456 888999999999999999999999999998887654
No 22
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1.1e-29 Score=238.40 Aligned_cols=285 Identities=16% Similarity=0.165 Sum_probs=217.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------C------CCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||+|.||++|+..|+++||+|++|+|++++.+.+++. + +..++++.++++++|+||+|+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 5899999999999999999999999999999999988888763 2 3356688888899999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCC-CHHH--HHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~-~~~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+. ++++++..+ + ++.++++++++ .|.. .+.+.+.+.+. ... ++.++..|..........+
T Consensus 84 ~~-~~~~v~~~l----~-----~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~---~~~----~~~~~~gP~~a~~~~~~~~ 146 (328)
T PRK14618 84 SK-ALRETLAGL----P-----RALGYVSCAKGLAPDGGRLSELARVLEFL---TQA----RVAVLSGPNHAEEIARFLP 146 (328)
T ss_pred hH-HHHHHHHhc----C-----cCCEEEEEeeccccCCCccchHHHHHHHh---cCC----CeEEEECccHHHHHHcCCC
Confidence 86 678877432 1 34588888885 5443 45666665420 001 2456777765544444456
Q ss_pred ceEEEecCCHHHHHHHHHHHHHcCCCeE--------EeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 188 TLTFMVGGSEDAYQAAKPLFLSMGKNTI--------YCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 188 ~~~~~~gg~~~~~~~v~~ll~~~g~~~~--------~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
++.++.|++++.++.++++|+..+.+++ +.+. .|.+..+|+.+|.....+.+++.|++.++++
T Consensus 147 ~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~ 226 (328)
T PRK14618 147 AATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVA 226 (328)
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999998776 2443 4888899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHhc----CCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 018506 251 LGISASTLTKILNSS----SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 326 (355)
Q Consensus 251 ~Gi~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~ 326 (355)
.|++++++++++..+ ...++.+.++.....+.++... .++.++|.+..+.||++.+.+++++.++++|+++.+++
T Consensus 227 ~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~-~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~ 305 (328)
T PRK14618 227 LGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDR-EHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVAR 305 (328)
T ss_pred hCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCH-HHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999999998764 3345544332111122221000 12556788899999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhcCCCC
Q 018506 327 IYAKLCENGHDSKDFSCVFQHYYGGKDE 354 (355)
Q Consensus 327 ~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 354 (355)
++ +++.|..++++.++++..+
T Consensus 306 ~~-------~~~~~~~~~~~~~~~~~~~ 326 (328)
T PRK14618 306 VA-------RGGWDPLAGLRSLMGREAK 326 (328)
T ss_pred HH-------hCCCCHHHHHHHHhcCCCC
Confidence 98 4677888888887765443
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.96 E-value=1.4e-27 Score=227.01 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=188.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh----------------CCCCC--CCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPT--KETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~----------------~g~~~--~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+++ .+... +.+..++++++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 689999999999999988875 9999999999999998876 22333 3346778899999999
Q ss_pred eCCCc----------hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 108 MLPSS----------SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 108 ~v~~~----------~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
|+|++ ..+++++..+.. + .++++||+.||++|.+++++.+.+.+ ..+...|.
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~-----~~g~lVV~~STv~pgtt~~l~~~~~~------------~~v~~~PE 141 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVE-I-----NPYAVMVIKSTVPVGFTAAMHKKYRT------------ENIIFSPE 141 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHh-c-----CCCCEEEEeeecCCchHHHHHHHhhc------------CcEEECcc
Confidence 99988 567777655432 2 25679999999999999999887642 11223443
Q ss_pred C---CChHHHhcCceEEEecCCHHHHHHHHHHHHH--cCCCeE-EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 178 S---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 178 ~---g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~--~g~~~~-~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
+ |...........+++|++++..+++.++|.. ++..+. ++++.++|+..|+++|.+.+..+++++|+..+|++.
T Consensus 142 ~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~ 221 (388)
T PRK15057 142 FLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL 221 (388)
T ss_pred cccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 2222222233388999988888999999965 555444 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
|+|.+++.++++.... ....+ + .-++||+..|..||..++...+ .++++++++++.++-+.
T Consensus 222 GiD~~eV~~a~~~d~r---i~~~~------l-------~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 222 GLNTRQIIEGVCLDPR---IGNHY------N-------NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred CcCHHHHHHHhcCCCC---CCCcc------C-------CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 9999999999975421 10100 0 1135788899999999997666 56788899988776543
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.96 E-value=1.1e-28 Score=231.45 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=206.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
||||+|||+|.||++++..|+++||+|++|+|++++++.+++. +...+.++.++++++|+||+|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 5899999999999999999999999999999999999888775 24456678888889999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 189 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~ 189 (355)
+ .++++++..+.+.+. +++++++++ +..+.+.+.+.+.+.+. .+......++..|.............
T Consensus 81 ~-~~~~~v~~~l~~~~~-----~~~~vi~~~ngv~~~~~~~~~~~l~~~-----~~~~~~~~~~~~P~~~~~~~~g~~~~ 149 (325)
T PRK00094 81 S-QALREVLKQLKPLLP-----PDAPIVWATKGIEPGTGKLLSEVLEEE-----LPDLAPIAVLSGPSFAKEVARGLPTA 149 (325)
T ss_pred H-HHHHHHHHHHHhhcC-----CCCEEEEEeecccCCCCCcHHHHHHHH-----cCCCCceEEEECccHHHHHHcCCCcE
Confidence 7 488888876554442 456888887 55665555555555431 11001245677776544434444566
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCCeEEeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 190 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 190 ~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~-----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
.++.+++.+.+++++++|+..+.++++..+. |.+...|+.+|.+......+++|++.++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 150 VVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred EEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 6777789999999999999998776655442 66677899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcC----CCcccccCCCCCCCcccCCCCCCCC-----CCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 018506 253 ISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323 (355)
Q Consensus 253 i~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~ 323 (355)
+|++++.++...+. ..++....+.+...+..+ ..+ ..+ ....+.||++.++++++++|+++|+.++
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~----~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~ 304 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQG----KSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEA 304 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCC----CCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999988765442 111111111100000000 001 112 4567899999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 324 AQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 324 ~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
+++++ +++.+...+++.+++
T Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 305 VYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred HHHHH-------cCCCCHHHHHHHHhc
Confidence 99998 477788888877654
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=7.5e-28 Score=223.78 Aligned_cols=260 Identities=17% Similarity=0.212 Sum_probs=196.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
+.|||+|||+|+||++||..|.++||+|++|+|++. .++.++++++|+||+++|+. ++++++..+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~~~l~ 68 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVAEQVQ 68 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHHHHHH
Confidence 458999999999999999999999999999999853 57888889999999999984 8888886653
Q ss_pred ccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChH-----HHhcCceEEEecC
Q 018506 124 GLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVL-----AAEAGTLTFMVGG 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~-----~~~~g~~~~~~gg 195 (355)
+.. ..++++++++++ ..|...+.+.+.+.. .+.++|+. +++. .....+..+++|+
T Consensus 69 ~~~----~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~ 131 (308)
T PRK14619 69 ALN----LPPETIIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASR 131 (308)
T ss_pred Hhc----CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeC
Confidence 321 124578999887 556655555555432 22344442 2221 1223567888999
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 258 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~-~----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 258 (355)
+.+.++.++++|+..+.++++.++ . |.+..+|+.+|...+.+..++.|++.++++.|++++++
T Consensus 132 ~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 999999999999999988886665 2 22344458889999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHhCCCChHHH
Q 018506 259 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTS 322 (355)
Q Consensus 259 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~gv~~pi~~ 322 (355)
+++. +.++++... +. ...++|.+||.+... .||++.+++++++.|+++|+.+
T Consensus 212 ~~~~--g~gd~~~t~-----~~-----~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 212 YGLS--GLGDLLATC-----TS-----PLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccc--chhhhheee-----cC-----CCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 9853 444433311 11 124566666666665 8999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 323 QAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 323 ~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
++++++ +++.+...+++.++++..
T Consensus 280 ~v~~i~-------~~~~~~~~~~~~l~~~~~ 303 (308)
T PRK14619 280 QVYRLL-------QGEITPQQALEELMERDL 303 (308)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHcCCC
Confidence 999999 477788888888777543
No 26
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=6e-25 Score=201.82 Aligned_cols=257 Identities=16% Similarity=0.216 Sum_probs=205.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.+|...+..|++.||+|+.+|.++++++.+++. | ..++++..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 899999999999999999999999999999999999988764 1 55678899999999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+||++|. .++++...+.+.+. +.++||.-||++|.+.+.+.+.+.... .+ ..+.++..|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-----~~~vvV~KSTVPvGt~~~v~~~i~~~~----~~--~~f~v~~NP 149 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILD-----GKAVVVIKSTVPVGTTEEVRAKIREEN----SG--KDFEVASNP 149 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-----CCeEEEEcCCCCCCchHHHHHHHHhhc----cc--CCceEecCh
Confidence 99998884 55666666554543 337999999999999999988876421 11 136788889
Q ss_pred CC---CChHHHhcCceEEEecCCH-HHHHHHHHHHHHc---CCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 177 VS---GGVLAAEAGTLTFMVGGSE-DAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 249 (355)
Q Consensus 177 v~---g~~~~~~~g~~~~~~gg~~-~~~~~v~~ll~~~---g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~ 249 (355)
.+ |........+-.+++|... .+.+.+++++..+ ..++++++. ..|++.|++.|.+.+.-+++++|...+|+
T Consensus 150 EFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 150 EFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 5555555555578888744 4688899999886 444555555 79999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 250 SLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 250 ~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
+.|+|.+++.+.+..-. .....++ +-+.||+..|+.||+..++..++++|.+.++++++.+.-+
T Consensus 229 ~~g~D~~~V~~gIGlD~---RIG~~fl-------------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 229 KVGADVKQVAEGIGLDP---RIGNHFL-------------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNE 292 (414)
T ss_pred HhCCCHHHHHHHcCCCc---hhhHhhC-------------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99999999999886532 1111111 1235788999999999999999999999999999987665
Q ss_pred H
Q 018506 330 K 330 (355)
Q Consensus 330 ~ 330 (355)
.
T Consensus 293 ~ 293 (414)
T COG1004 293 R 293 (414)
T ss_pred H
Confidence 4
No 27
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=5.1e-25 Score=204.81 Aligned_cols=266 Identities=14% Similarity=0.147 Sum_probs=200.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCCC-------------CCCCCHHHHhh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAE 100 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~e~~~ 100 (355)
+|+|+|||+|.||++||..|+++||+|++|||+++..+.. .+.|. ..+.++.++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4689999999999999999999999999999999877653 23342 46678888889
Q ss_pred cCCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
++|+|+.|+|+..+++..+.+ +.+.. ++.+++.+ ++++....++.+.+.. . +..+.++|+.+
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~------~~~~ii~s-sts~~~~~~la~~~~~------~----~~~~~~hp~~p 144 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALA------PPHAILAS-STSALLASAFTEHLAG------R----ERCLVAHPINP 144 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhC------CCcceEEE-eCCCCCHHHHHHhcCC------c----ccEEEEecCCC
Confidence 999999999987666654433 22222 22345543 4444445666665532 1 25788888865
Q ss_pred ChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 180 GVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
... ..+..+++ +++++++.++++++.+|+++++++..+.|. ++||+ ..++++|++.++++.|++++
T Consensus 145 ~~~----~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~ 213 (308)
T PRK06129 145 PYL----IPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVD 213 (308)
T ss_pred ccc----CceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHH
Confidence 321 13456775 789999999999999999999998766665 34443 33678999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCC
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGH 336 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~ 336 (355)
++.+++..+.+.+|.. ..| -. ..+.|.++|....+.||..+..+++++.+.+.|+++...+-+....+.-+
T Consensus 214 ~id~~~~~~~g~~~~~--~gp--~~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (308)
T PRK06129 214 DIDAVIRDGLGLRWSF--MGP--FE-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAAL 284 (308)
T ss_pred HHHHHHHhccCCCccC--cCH--HH-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHc
Confidence 9999999988877754 222 12 23456678888899999999999999999999999988887777777778
Q ss_pred CCCcHHHHHHH
Q 018506 337 DSKDFSCVFQH 347 (355)
Q Consensus 337 g~~d~~~~~~~ 347 (355)
+..++..+.++
T Consensus 285 ~~~~~~~~~~~ 295 (308)
T PRK06129 285 PLDQLAARQAW 295 (308)
T ss_pred CCCCHHHHHHH
Confidence 88888877664
No 28
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.93 E-value=1.5e-23 Score=203.47 Aligned_cols=256 Identities=15% Similarity=0.156 Sum_probs=197.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhCC-------------------CCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~aD 103 (355)
||||+|||+|.+|.++|..|+++| |+|++||+++++++.+++.+ ...+++..++++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 589999999999999999999985 78999999999999876532 234566777889999
Q ss_pred EEEEeCCCch--------------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 018506 104 VVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169 (355)
Q Consensus 104 iVi~~v~~~~--------------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 169 (355)
++|+|||+|. .+++++..+...++ ++++||..||.+|.+++.+.+.+.+. ..| .+
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lVv~~STvp~Gtt~~~~~~l~~~----~~g--~~ 149 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSK-----SDKIVVEKSTVPVKTAEAIEKILTHN----SKG--IN 149 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCC-----CCcEEEEeCCCCCChHHHHHHHHHhh----CCC--CC
Confidence 9999998764 45556655544443 56799999999999999998877542 112 23
Q ss_pred ceEEeCCCC---CChHHHhcCceEEEecCC-----HHHHHHHHHHHHHcCC-CeEEeCCcchHHHHHHHHHHHHHHHHHH
Q 018506 170 PVMLDAPVS---GGVLAAEAGTLTFMVGGS-----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLG 240 (355)
Q Consensus 170 ~~~~~~pv~---g~~~~~~~g~~~~~~gg~-----~~~~~~v~~ll~~~g~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~ 240 (355)
+++..+|.+ |...........+++|+. +++.+.++++++.+-. .++.+.++..|+..|++.|.+.++.+++
T Consensus 150 f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf 229 (473)
T PLN02353 150 FQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS 229 (473)
T ss_pred eEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 678888977 444444455556777763 3467889999998853 4566677899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCC--C
Q 018506 241 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 318 (355)
Q Consensus 241 ~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~ 318 (355)
++|...+|++.|+|..++.++++...--.+. .. .-++|++..|+.||..++...+++.|++ +
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~~d~rig~~--~l--------------~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~ 293 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVGKDSRIGPK--FL--------------NASVGFGGSCFQKDILNLVYICECNGLPEVA 293 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCcCCCC--CC--------------CCCCCCCCcchhhhHHHHHHHHHHcCCchHH
Confidence 9999999999999999999988753210010 00 1134677899999999999999999998 7
Q ss_pred hHHHHHHHH
Q 018506 319 PLTSQAQDI 327 (355)
Q Consensus 319 pi~~~~~~~ 327 (355)
++++++.++
T Consensus 294 ~l~~~~~~i 302 (473)
T PLN02353 294 EYWKQVIKM 302 (473)
T ss_pred HHHHHHHHH
Confidence 777776643
No 29
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=4.5e-24 Score=195.20 Aligned_cols=255 Identities=21% Similarity=0.297 Sum_probs=195.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------C-CCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~aDiV 105 (355)
++|||||+|.+|.++|..++++|++|+++|.++.+++.+++. | ...++++.++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 899999999999999999999999999999999999888763 2 3445556555 499999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC--CCceEEe
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW--ENPVMLD 174 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~~~ 174 (355)
|+|||+|- .+++....+.+.|+ +|.+||.-||++|.+++++...+.+ ...|.. .++.+..
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~-----kG~LVIlEST~~PGTTe~v~~plle----~~sgL~~~~Df~lay 159 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLK-----KGDLVILESTTPPGTTEEVVKPLLE----ERSGLKFGEDFYLAY 159 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCcHHHHHHHHHh----hcCCCcccceeeEee
Confidence 99999872 44444444444553 6779999999999999999998865 223332 2344455
Q ss_pred CCCC---CChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 175 APVS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 175 ~pv~---g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
+|.- |...........++.|-+++..+.++.+++.+-..++.+.+...|++.|+..|.+..+++++++|...+|.++
T Consensus 160 sPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~ 239 (436)
T COG0677 160 SPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAM 239 (436)
T ss_pred CccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 6643 4333333344456666688999999999999987788888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
|+|..++.++++.-+ | ...+.|. ||.+..|...|-.++...++++|+++.+.++++++-
T Consensus 240 GIdvwevIeaAnt~P---~-~~~~~PG--------------pGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN 298 (436)
T COG0677 240 GIDVWEVIEAANTKP---R-VNIFYPG--------------PGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREIN 298 (436)
T ss_pred CCcHHHHHHHhccCC---c-eeecCCC--------------CCCCCcccccCchheeecccccCCchHHHHHHHHHh
Confidence 999999999998632 2 2333332 355566777788788888888888887777766543
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.6e-24 Score=197.09 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=197.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHh---hcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~aDiVi~~v~~~~~~ 115 (355)
..+.||+||+|.||+.+|.+++++||.|.+|||++++.+++.+. .+..+.|++|.+ +...-|+++|.....+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 34679999999999999999999999999999999999998763 355677888764 6789999999887778
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
+.+++.+.+++. ++.++||-.+.....+.+-.+.+.+ . |++|+...++|+...+..|+ .+|.||
T Consensus 82 D~~I~~L~p~Le-----~gDIiIDGGNs~y~DT~RR~~eL~~------~----Gi~FvG~GVSGGEeGA~~GP-SiMpGG 145 (473)
T COG0362 82 DAVIEQLLPLLE-----KGDIIIDGGNSHYKDTIRRNKELSE------K----GILFVGMGVSGGEEGARHGP-SIMPGG 145 (473)
T ss_pred HHHHHHHHhhcC-----CCCEEEeCCCcCCchHHHHHHHHHh------c----CCeEEeccccccccccccCC-CcCCCC
Confidence 899998888875 4569999998874444444444432 2 38999999999999999999 999999
Q ss_pred CHHHHHHHHHHHHHcC------CCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hc
Q 018506 196 SEDAYQAAKPLFLSMG------KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g------~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~ 265 (355)
++++++.++++|+.+. .++.|+|+-|+++.+|+++|.+.+.-+++++|++.+.+. .|++.+++.+++. .+
T Consensus 146 ~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~g 225 (473)
T COG0362 146 QKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKG 225 (473)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccC
Confidence 9999999999999996 345799999999999999999999999999999999877 8999888777665 34
Q ss_pred CCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHH-------HHHHHHHHHhCCCChHHHHHH
Q 018506 266 SARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL-------NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 266 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~-------~~~~~~a~~~gv~~pi~~~~~ 325 (355)
...|+..+..... +. ..|-..+-.+-...-|. ++....|.++|+|+++...++
T Consensus 226 eL~SYLIeIT~~I---L~----~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 226 ELDSYLIEITADI---LR----KKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred cchHHHHHHHHHH---Hh----hcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 4444433321111 10 01111111111111111 355788999999987665543
No 31
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.92 E-value=1.4e-23 Score=190.51 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=212.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
+|||+|||.|.||++||..|+++||+|.+|.|+++.+++++.. ++.+++++.++++++|+|++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 5899999999999999999999999999999999999988763 24567899999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCce
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 189 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~ 189 (355)
. +.+++++..+.+.+. ++.+++.++.+. +.+.+.+.+.+.+. .+.. .+.++++|.+.........+.
T Consensus 81 s-~~~r~v~~~l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~----l~~~--~~~vLSGPs~A~EVa~g~pta 148 (329)
T COG0240 81 S-QALREVLRQLKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEE----LPDN--PIAVLSGPSFAKEVAQGLPTA 148 (329)
T ss_pred h-HHHHHHHHHHhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHH----cCCC--eEEEEECccHHHHHhcCCCcE
Confidence 7 699999988765553 556888888765 54555566655431 1111 167899998877666666776
Q ss_pred EEEecCCHHHHHHHHHHHHHcCCCeEEeCC-c----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 190 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-A----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 190 ~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
+.+.+-|.+..++++.+|..-..+++...+ . |....+.+..|.-.+.+...++|+..++.++|
T Consensus 149 ~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG 228 (329)
T COG0240 149 VVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALG 228 (329)
T ss_pred EEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC
Confidence 777778999999999999986655554333 1 33344446677778889999999999999999
Q ss_pred CCHHHHHHHHHhcCC--CcccccCCCCCCCcccCCC--CCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 018506 253 ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVP--ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 328 (355)
Q Consensus 253 i~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~ 328 (355)
-+++++..+...|+. ++.....++...+.+-+.- .+........+....+....+.++++++++++|+++++++++
T Consensus 229 ~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl 308 (329)
T COG0240 229 AKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVL 308 (329)
T ss_pred CCcchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999888776663 3332223333333221110 000000112345566777899999999999999999999998
Q ss_pred HHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 329 AKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 329 ~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
. +..+...+++.+..+..
T Consensus 309 ~-------~~~~~~~~~~~L~~r~~ 326 (329)
T COG0240 309 Y-------EGLDPKEAIEELMGRDL 326 (329)
T ss_pred h-------CCCCHHHHHHHHhcccc
Confidence 6 66677778777766554
No 32
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.90 E-value=6.6e-23 Score=193.62 Aligned_cols=265 Identities=17% Similarity=0.183 Sum_probs=175.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----------------CCCCHHHHhhcCCEEEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------------TKETPFEVAEASDVVIT 107 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----------------~~~s~~e~~~~aDiVi~ 107 (355)
||||+|||+|.||+.+|..|+++||+|++|+|++ ..+.+++.|.. ..++. +.+..+|+||+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 5899999999999999999999999999999965 34666655432 13344 56679999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC---CChHHH
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS---GGVLAA 184 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~---g~~~~~ 184 (355)
|+|.+ ++++++..+.+.+. ++++|++++++. ...+.+.+.++...+. . +..+..+ +. +.....
T Consensus 80 ~vk~~-~~~~~~~~l~~~~~-----~~~iii~~~nG~-~~~~~l~~~~~~~~~~--~----g~~~~~~-~~~~pg~~~~~ 145 (341)
T PRK08229 80 TVKSA-ATADAAAALAGHAR-----PGAVVVSFQNGV-RNADVLRAALPGATVL--A----GMVPFNV-ISRGPGAFHQG 145 (341)
T ss_pred EecCc-chHHHHHHHHhhCC-----CCCEEEEeCCCC-CcHHHHHHhCCCCcEE--E----EEEEEEE-EecCCceEEec
Confidence 99986 66777765544432 456777776543 3335566655421100 0 0111111 12 111122
Q ss_pred hcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHH
Q 018506 185 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSEA 244 (355)
Q Consensus 185 ~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~--------------------~~~~~Ea 244 (355)
..+++.+ + +.+.++.+.++|+..+.++.+.++++.+.|.|++.|.+.... ..++.|+
T Consensus 146 ~~g~l~~--~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~ 222 (341)
T PRK08229 146 TSGALAI--E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREA 222 (341)
T ss_pred CCCceEe--c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHH
Confidence 2444333 2 335578999999999999999999999999999999743322 3778999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC-----CcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------HH
Q 018506 245 LTLGQSLGISASTLTKILNSSSA-----RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------LA 307 (355)
Q Consensus 245 ~~la~~~Gi~~~~~~~~~~~~~~-----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~ 307 (355)
+.++++.|++++.+.++..++.. .++...... . .....++. ....|.+|+. ++
T Consensus 223 ~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~---~~~Sm~~D~~~~r~tEi~~i~G~i 292 (341)
T PRK08229 223 LRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLA--G-----RMLAIDPL---ARSSMSDDLAAGRATEIDWINGEI 292 (341)
T ss_pred HHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHH--H-----HhhccCCc---cCchHHHHHHcCCcchHHHHhhHH
Confidence 99999999987654433322210 001000000 0 01111221 2356889998 79
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 018506 308 LASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338 (355)
Q Consensus 308 ~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~ 338 (355)
++.|+++|+++|+++.++++++..++.|...
T Consensus 293 ~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 293 VRLAGRLGAPAPVNARLCALVHEAERAGARP 323 (341)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999987543
No 33
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.90 E-value=1.3e-22 Score=186.17 Aligned_cols=245 Identities=16% Similarity=0.252 Sum_probs=175.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCCh-hHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~-~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
|+.|||+|||+|+||.+|+++|.++| ++|++|||++ ++.+.+.. .|+..+.++.++++++|+||+|+|+ +++.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~ 79 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVA 79 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHH
Confidence 34589999999999999999999998 7899999976 46677765 4777788888999999999999996 5777
Q ss_pred HHhcCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCC---hHHHhcCceEEE
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFM 192 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~---~~~~~~g~~~~~ 192 (355)
+++..+.+.+. ++++||++ ++++++..++ .++. +.|+++. ...+..+.++++
T Consensus 80 ~vl~~l~~~~~-----~~~liIs~~aGi~~~~l~~---~~~~----------------~~~v~r~mPn~~~~~~~~~t~~ 135 (279)
T PRK07679 80 EALIPFKEYIH-----NNQLIISLLAGVSTHSIRN---LLQK----------------DVPIIRAMPNTSAAILKSATAI 135 (279)
T ss_pred HHHHHHHhhcC-----CCCEEEEECCCCCHHHHHH---HcCC----------------CCeEEEECCCHHHHHhcccEEE
Confidence 77765543332 45689986 7776665444 2211 1233322 334555666778
Q ss_pred ecCC---HHHHHHHHHHHHHcCCCeE------E--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHH
Q 018506 193 VGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTK 260 (355)
Q Consensus 193 ~gg~---~~~~~~v~~ll~~~g~~~~------~--~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~ 260 (355)
++++ ++.++.++++|+.+|..++ + ++..|+++++ +..+.|++. .+++.|++++++.+
T Consensus 136 ~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa~-----------~~~~~eal~e~~~~~Gl~~~~a~~ 204 (279)
T PRK07679 136 SPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPAY-----------IYYVVEAMEKAAKKIGLKEDVAKS 204 (279)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7765 6788999999999998665 5 5666777775 344556666 49999999999999
Q ss_pred HHHhcCCCc-ccccCCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 261 ILNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 261 ~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
++..+...+ .........+..+ .+++ .|+++.. ..++..++.|+.--+.+++.+.++++.+.|
T Consensus 205 ~~~~~~~gsa~~~~~~~~~~~~l-----~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 205 LILQTMIGAAEMLKASEKHPSIL-----RKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 998854322 2211111222222 2345 6776544 577888889999999999999999988875
No 34
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.89 E-value=3.8e-22 Score=181.96 Aligned_cols=245 Identities=19% Similarity=0.249 Sum_probs=172.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEE-eCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~-dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||+|||+|+||.+|+++|.++|| +|++| +|++++.+.+.+.|+..++++.++++++|+||+|+| ++++++++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 789999999999999999999998 89999 999999998888888888899999999999999997 578999987
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEe---cCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMV---GGS 196 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~---gg~ 196 (355)
++.+.+ .++++||+.+++.+. ..+.+..+. ..++ ..|..... ...+. +.++ +++
T Consensus 80 ~l~~~~-----~~~~~iIs~~~g~~~--~~l~~~~~~------------~~vvr~mP~~~~~--~~~~~-~~l~~~~~~~ 137 (266)
T PLN02688 80 ELRPLL-----SKDKLLVSVAAGITL--ADLQEWAGG------------RRVVRVMPNTPCL--VGEAA-SVMSLGPAAT 137 (266)
T ss_pred HHHhhc-----CCCCEEEEecCCCcH--HHHHHHcCC------------CCEEEECCCcHHH--HhCce-EEEEeCCCCC
Confidence 653333 245677766444322 233333321 1233 35543332 22233 3333 348
Q ss_pred HHHHHHHHHHHHHcCCCeEEeC---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCG---------GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSA 267 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g---------~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~ 267 (355)
++.++.++++|+.+|. +++++ ..|+++++ .+.++..+.|+ +.+.|++++++.+++..+..
T Consensus 138 ~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~ 206 (266)
T PLN02688 138 ADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAGLPRDVALSLAAQTVL 206 (266)
T ss_pred HHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHH
Confidence 8999999999999998 88764 45666665 34455556666 89999999999999988765
Q ss_pred Cccccc-CCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 268 RCWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 268 ~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
.++... .....+..+. +.-..|+.+ ....++..++.|++-.+.+++.+.++++.+.+
T Consensus 207 gs~~l~~~~~~~~~~l~----~~v~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 207 GAAKMVLETGKHPGQLK----DMVTSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHHHHHhcCCCHHHHH----HhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 544311 1111111111 122234322 34678899999999999999999999998865
No 35
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.88 E-value=2.1e-21 Score=191.19 Aligned_cols=263 Identities=15% Similarity=0.128 Sum_probs=179.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-------------------CC-CCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~aDi 104 (355)
.|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .+ +..++++.+++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 468999999999999999999999999999999998766432 12 5677889999999999
Q ss_pred EEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHH
Q 018506 105 VITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 183 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~ 183 (355)
||.|+|+..+++..+.. +...+ +++ ++|++||..+.. ..+.+.+.. . +..++++|+...
T Consensus 84 Vieavpe~~~vk~~l~~~l~~~~-----~~~-~iI~SsTsgi~~-s~l~~~~~~------~----~r~~~~hP~nP~--- 143 (495)
T PRK07531 84 IQESVPERLDLKRRVLAEIDAAA-----RPD-ALIGSSTSGFLP-SDLQEGMTH------P----ERLFVAHPYNPV--- 143 (495)
T ss_pred EEEcCcCCHHHHHHHHHHHHhhC-----CCC-cEEEEcCCCCCH-HHHHhhcCC------c----ceEEEEecCCCc---
Confidence 99999998877775443 32222 133 566777776553 345554432 1 246777775411
Q ss_pred HhcCceEEEecCC---HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHH
Q 018506 184 AEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTLT 259 (355)
Q Consensus 184 ~~~g~~~~~~gg~---~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~-~~Ea~~la~~~Gi~~~~~~ 259 (355)
..++++.+++|+ ++.++.++++++.+|+++++++ |.+.|++.+.+..+ ++|++.++++.|++++++.
T Consensus 144 -~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 144 -YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred -ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 234567788875 7999999999999999999887 45566666555555 5999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHCCCC
Q 018506 260 KILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLALAS-AKEVGVDCPLTSQAQDIYAKLCENGHD 337 (355)
Q Consensus 260 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~-a~~~gv~~pi~~~~~~~~~~~~~~g~g 337 (355)
+++..+.+.+|... .|+ ...+..+ ..++..+.+-++-.++. ..+.+-..++.....+.+....+.-+|
T Consensus 215 ~~~~~g~g~~~~~~--Gpf--------~~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (495)
T PRK07531 215 DVIRYSFGLRWAQM--GLF--------ETYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSG 284 (495)
T ss_pred HHHhhccCCCcccc--chH--------HHHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcC
Confidence 99999887776521 110 0011111 11233334444444332 466665556666666665566655566
Q ss_pred CCcHHHHHH
Q 018506 338 SKDFSCVFQ 346 (355)
Q Consensus 338 ~~d~~~~~~ 346 (355)
..++..+.+
T Consensus 285 ~~~~~~~~~ 293 (495)
T PRK07531 285 GLSIRELER 293 (495)
T ss_pred CCCHHHHHH
Confidence 666655544
No 36
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=175.95 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=158.8
Q ss_pred ceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCCCHHHHhh
Q 018506 46 ESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAE 100 (355)
Q Consensus 46 mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~~ 100 (355)
|||.|.|+|+- |.+||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68888888864 88999999999999999999987 555677788888889999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCceEEe-CCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLD-APVS 178 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~ 178 (355)
++|+||+|+|+..++++++..+.+.+ +++++|+|+||++|... +.+.+.+.... ... ++++.+ +++.
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl~~L~~~L-----~~g~IVId~ST~~~~~~s~~l~~~l~~~~--~~~----gi~~~~p~~v~ 149 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIAKNILPHL-----PENAVICNTCTVSPVVLYYSLEGELRTKR--KDV----GISSMHPAAVP 149 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHHHhcccc--ccc----CeeecCCcccc
Confidence 99999999998766888887543333 25679999999999877 66666664210 011 233432 3333
Q ss_pred CChHHHhcCceEEEecC--------CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 179 GGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 250 (355)
Q Consensus 179 g~~~~~~~g~~~~~~gg--------~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~ 250 (355)
|+ ..+.+.++.|+ +++.+++++++|+.+|.++++++ .|.+..+|+++|++.+...++.+|++.++++
T Consensus 150 Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~ 224 (342)
T PRK12557 150 GT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTK 224 (342)
T ss_pred cc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33444666654 89999999999999999887777 4999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHH
Q 018506 251 LGISASTLTKILN 263 (355)
Q Consensus 251 ~Gi~~~~~~~~~~ 263 (355)
.|.++.++.+-+.
T Consensus 225 ~~~~p~~~~~~~~ 237 (342)
T PRK12557 225 IIKAPKEMIEKQI 237 (342)
T ss_pred hCCCHHHHHHHHH
Confidence 9999888765544
No 37
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.9e-21 Score=172.39 Aligned_cols=256 Identities=21% Similarity=0.319 Sum_probs=196.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC---C--CCCCCCHHHHh---hcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~aDiVi~~v~~~~~~ 115 (355)
..+.||+||++.||..++.+.+++|+.|.+|||+.++++++.+. | +....|++|.+ +....|++.|+....+
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 34789999999999999999999999999999999999987652 2 45567888875 5789999999999999
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 195 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg 195 (355)
+..++++.+++. ++.+|||-.+.....+.+-.+.+.+ . |+-|+.+.++|+...+..|+ .+|.||
T Consensus 85 D~~I~~L~p~Le-----kgDiIIDGGNs~y~dT~RR~~el~k------~----GilfvG~GVSGGEEGAR~GP-SlMpGg 148 (487)
T KOG2653|consen 85 DQFIEELVPYLE-----KGDIIIDGGNSEYQDTERRCRELAK------K----GILFVGSGVSGGEEGARYGP-SLMPGG 148 (487)
T ss_pred HHHHHHHHhhcC-----CCCEEEeCCcccCcchHHHHHHHHh------c----CcEEEecCccCcccccccCC-ccCCCC
Confidence 999998888875 5569999998874444444444432 2 38899999999999999999 899999
Q ss_pred CHHHHHHHHHHHHHcCC-------CeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHh---
Q 018506 196 SEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNS--- 264 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~-------~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~~--- 264 (355)
+++++..++++|+.+.. ...++|+-|+++.+||++|.+.+.-+++++|++.+.++ .|++.+++.+++..
T Consensus 149 ~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~ 228 (487)
T KOG2653|consen 149 SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNK 228 (487)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999999998842 35799999999999999999999999999999999988 88999888877753
Q ss_pred cCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHH---------HHHHHHHHHhCCCChHHHHHH
Q 018506 265 SSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDL---------NLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 265 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~---------~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+-..||..+.......+.+ + .|- ....|-+ ...+..|-++|+|.|+...++
T Consensus 229 geleSfLieIT~dIlk~~d------~--~G~--~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eav 288 (487)
T KOG2653|consen 229 GELESFLIEITADILKFKD------E--DGK--PLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAV 288 (487)
T ss_pred cchhHHHHHHhHHHhheec------c--CCC--hHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHH
Confidence 3333333322211111110 0 111 1112222 245778889999998766544
No 38
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.86 E-value=1.1e-20 Score=174.15 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=140.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHHHhhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEA 101 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~ 101 (355)
.||+|||+|.||..||..|+++||+|++||++++.++.+.+ . ++..++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999999998877542 1 13346788889999
Q ss_pred CCEEEEeCCCchHHHHHhc-CCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 102 SDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~-~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
||+||+|+|++.+++..+. ++.+.+ ++++++ +++||.+|.......+... ...+.||+ +|+.+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~-----~~~~il~~~tSt~~~~~l~~~~~~~~---------r~~g~h~~-~Pv~~ 146 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHA-----PAECYIATNTSTMSPTEIASFTKRPE---------RVIAMHFF-NPVHK 146 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhC-----CCCcEEEEcCCCCCHHHHHhhcCCcc---------cEEEEecC-CCccc
Confidence 9999999999877765543 322232 245554 7899988875443322111 11236788 67655
Q ss_pred ChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 180 GVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 180 ~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
. +++.+++| ++++++.++++++.+|+.++++++ +|. +.|.+.. ..++|++.+.++.-.++
T Consensus 147 ~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf------~~nRl~~---~~~~ea~~~~~~gv~~~ 210 (288)
T PRK09260 147 M-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGF------VTSRISA---LVGNEAFYMLQEGVATA 210 (288)
T ss_pred C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccH------HHHHHHH---HHHHHHHHHHHcCCCCH
Confidence 3 57888888 999999999999999999999987 432 3355443 45689998887655789
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 211 ~~iD~~~~~g~ 221 (288)
T PRK09260 211 EDIDKAIRLGL 221 (288)
T ss_pred HHHHHHHHhCC
Confidence 99988886553
No 39
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.85 E-value=3.7e-20 Score=182.11 Aligned_cols=191 Identities=19% Similarity=0.237 Sum_probs=146.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~ 99 (355)
...||||||+|.||..||..|+.+||+|++||++++.++.. .+.| +..++++++ +
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 34689999999999999999999999999999999988763 4444 456677766 4
Q ss_pred hcCCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-AP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p 176 (355)
.+||+||.|++++.+++..+.. +..+. +++.++ +|+||.++.. +++.+.. ..++.|.||++ +|
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~-----~~~ailasntStl~i~~---la~~~~~------p~r~~G~hff~Pa~ 150 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIV-----SPDCILATNTSSLSITA---IAAALKH------PERVAGLHFFNPVP 150 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHHH---HHhhcCC------cccEEEEeecCCcc
Confidence 6999999999999999987654 22222 244566 5899998863 4443321 11122489999 66
Q ss_pred CCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 177 VSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
++ .++.+++| ++++++.+.++++.+|+.++++++ .| .+.|.+.. ..++|++.++++.+
T Consensus 151 v~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~ 212 (507)
T PRK08268 151 LM---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV 212 (507)
T ss_pred cC---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC
Confidence 65 35777764 899999999999999999999997 56 25555443 36799999999999
Q ss_pred CCHHHHHHHHHhcCC
Q 018506 253 ISASTLTKILNSSSA 267 (355)
Q Consensus 253 i~~~~~~~~~~~~~~ 267 (355)
++++++.+++..+.+
T Consensus 213 ~~~~~iD~al~~~~G 227 (507)
T PRK08268 213 ADPATIDAILREAAG 227 (507)
T ss_pred CCHHHHHHHHHhcCC
Confidence 999999999976543
No 40
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=6e-20 Score=172.89 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=195.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC---------------CCCCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~aDiVi~~ 108 (355)
.+|||+|||+|+||+++|..|+++| +|++|.|++++++.+++.+ +..++++.++++++|+||++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 4589999999999999999999998 6888999999998887532 12345777888899999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-HHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+|. ..+++++..+.+.+. ++.+++.++++... +.+.+.+.+.+. + .+ ....++..|.+.. ....+
T Consensus 85 vps-~~~~~vl~~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~-l---~~--~~~~~l~GP~~a~--ev~~g 150 (341)
T PRK12439 85 VPS-HGFRGVLTELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEV-L---PG--HPAGILAGPNIAR--EVAEG 150 (341)
T ss_pred eCH-HHHHHHHHHHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHH-c---CC--CCeEEEECCCHHH--HHHcC
Confidence 996 589999988776653 33466666665543 222223333210 0 00 0134566774432 22334
Q ss_pred ce--EEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 018506 188 TL--TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-----------------VSMLGVSEALTLG 248 (355)
Q Consensus 188 ~~--~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~-----------------~~~~~~~Ea~~la 248 (355)
.. .++.+.+++..+.++++|+.-+.+++...++-...|-|.+-|.... .+..++.|+..++
T Consensus 151 ~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~ 230 (341)
T PRK12439 151 YAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLG 230 (341)
T ss_pred CCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 43 3445567788899999999888888877777777888877776532 4667889999999
Q ss_pred HHcCCCHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHH
Q 018506 249 QSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 324 (355)
Q Consensus 249 ~~~Gi~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~ 324 (355)
++.|.++++++++..-++. ++.....++...+.. +|...+.-...-..+-........+.++++++++++|+++++
T Consensus 231 ~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~ 310 (341)
T PRK12439 231 VAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREV 310 (341)
T ss_pred HHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999999999988877763 333322333322221 111100000000012345566678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhcCC
Q 018506 325 QDIYAKLCENGHDSKDFSCVFQHYYGGK 352 (355)
Q Consensus 325 ~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 352 (355)
++++ +++.|...+++.+..+.
T Consensus 311 ~~il-------~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 311 DAVI-------NHGSTVEQAYRGLIAEV 331 (341)
T ss_pred HHHH-------hCCCCHHHHHHHHhcCC
Confidence 9999 57778888888877654
No 41
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.84 E-value=1.8e-19 Score=169.28 Aligned_cols=289 Identities=14% Similarity=0.074 Sum_probs=199.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-------CcEEEEeCChh-----HHHHHHhC--------------CCCCCCCHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDM--------------GVPTKETPF 96 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~--------------g~~~~~s~~ 96 (355)
...|||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+++. ++..++++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 35689999999999999999999997 89999999986 36666643 234467888
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCc--cccCCCCCCCeEEEEcCCCCH-HHH--HHHHHHHhhchhhhccCCCCCce
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNG--LLQGGNSVRPQLLIDSSTIDP-QTS--RNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~--~l~~~~~~~~~ivi~~st~~~-~~~--~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
++++++|+||+++|. +.+++++..+.+ .+. +++++|.++.+.. .+. ..+.+.+.+. + + ..+.
T Consensus 89 eav~~aDiIvlAVPs-q~l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~-l----~--~~~~ 155 (365)
T PTZ00345 89 EAVEDADLLIFVIPH-QFLESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEE-L----G--IPCC 155 (365)
T ss_pred HHHhcCCEEEEEcCh-HHHHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHH-h----C--CCeE
Confidence 999999999999996 699999998876 442 3457777766543 221 2234444321 1 1 1256
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cch--HHHHH--------------HHHHHHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------ICNNLTM 234 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~--a~~~K--------------l~~n~~~ 234 (355)
++.+|.+.........+..++++.|.+..+.++++|+.-..+++...+ .|. +-++| +..|.-.
T Consensus 156 ~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~ka 235 (365)
T PTZ00345 156 ALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKS 235 (365)
T ss_pred EEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 788998776666666666777778999999999999876655554443 222 33444 5567777
Q ss_pred HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcCC--CcccccCCCCCCCcccCCCCC-CCCCC---C---cchhhHHHH
Q 018506 235 AVSMLGVSEALTLGQSLG--ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPAS-RNYGG---G---FASKLMAKD 303 (355)
Q Consensus 235 ~~~~~~~~Ea~~la~~~G--i~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~-~~~~~---~---~~~~~~~kd 303 (355)
+.+...+.|+..+++++| .++++++++..-|+. ++.. .+++..+..-+.-.. ..+.. . ..+......
T Consensus 236 alitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 236 AIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHH
Confidence 889999999999999997 489999998887763 3332 344333322110000 00000 0 112234556
Q ss_pred HHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhcCCC
Q 018506 304 LNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKD 353 (355)
Q Consensus 304 ~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~ 353 (355)
...+.++++++++ ++|+++++++++. ++.+...+++.+..+..
T Consensus 314 ~~~v~~l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~~r~~ 358 (365)
T PTZ00345 314 LKEVYEVLESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLSTNEL 358 (365)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHHcCCC
Confidence 6788999999999 8999999999994 66677777777766543
No 42
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.83 E-value=3e-20 Score=149.12 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 300 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
|+|..+|+++|++...++.+++|++.++++.|+|++++++++..+.+.||....+.+ . .+.+++|.++|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~--~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP--R----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH--H----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh--h----hhhcccCCccchhHhh
Confidence 689999999999999999999999999999999999999999999988887654422 1 1346789999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCCCcHHHHHHHH
Q 018506 301 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 348 (355)
Q Consensus 301 ~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 348 (355)
.||++++++.+++.|+|+|+.+.+.+.|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
No 43
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.82 E-value=2.4e-19 Score=167.12 Aligned_cols=195 Identities=20% Similarity=0.269 Sum_probs=135.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----C--------------CCCCCCHHHHhhcCCEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVV 105 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~aDiV 105 (355)
++||+|||+|.||.+||..|+++||+|++||+++++++.+.+. + +..+++..++++++|+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4789999999999999999999999999999999887766541 1 23456788888999999
Q ss_pred EEeCCCchH-HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 106 ITMLPSSSH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 106 i~~v~~~~~-~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
|+|+|...+ .+.++..+.+.+. ++.+| .+++.... ...+.+.+.. ...+.+.|+.++|..+.
T Consensus 84 i~av~~~~~~~~~v~~~l~~~~~-----~~~ii-~s~tsg~~-~~~l~~~~~~------~~~~ig~h~~~p~~~~~---- 146 (311)
T PRK06130 84 IEAVPEKLELKRDVFARLDGLCD-----PDTIF-ATNTSGLP-ITAIAQAVTR------PERFVGTHFFTPADVIP---- 146 (311)
T ss_pred EEeccCcHHHHHHHHHHHHHhCC-----CCcEE-EECCCCCC-HHHHHhhcCC------cccEEEEccCCCCccCc----
Confidence 999998754 3455554444332 33344 33333332 2355555431 00111245555553322
Q ss_pred hcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018506 185 EAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 261 (355)
Q Consensus 185 ~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~ 261 (355)
+..++.+ +++.++.++++++.+|+.+++++....+. +++|++. ..++|++.++++.|++++++.++
T Consensus 147 ----l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~ 215 (311)
T PRK06130 147 ----LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEV 215 (311)
T ss_pred ----eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHH
Confidence 2334443 68999999999999999989887422222 5666643 55899999999999999999999
Q ss_pred HHhcCC
Q 018506 262 LNSSSA 267 (355)
Q Consensus 262 ~~~~~~ 267 (355)
+..+.+
T Consensus 216 ~~~~~g 221 (311)
T PRK06130 216 VKWSLG 221 (311)
T ss_pred HHhcCC
Confidence 987654
No 44
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.82 E-value=4.4e-19 Score=166.47 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=173.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--C------------CCCCCHHHHh-hcCCEEEEeCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--~------------~~~~s~~e~~-~~aDiVi~~v~ 110 (355)
|||+|||+|.||++++..|+++||+|++|+|+++.++.+++.+ . ..+++..+++ ..+|+||+++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 6899999999999999999999999999999999888887631 1 1335566665 58999999999
Q ss_pred CchHHHHHhcCCCc-cccCCCCCCCeEEEEcCCCCHHH-----HHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 111 SSSHVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQT-----SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 111 ~~~~~~~vl~~~~~-~l~~~~~~~~~ivi~~st~~~~~-----~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
+ .++++++..+.+ .+. ++..++.++++.... .+.+.+.++.+ .+..+.+|.+......
T Consensus 81 s-~~~~~~l~~l~~~~l~-----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~----------~~~~~~Gp~~a~~~~~ 144 (326)
T PRK14620 81 T-QQLRTICQQLQDCHLK-----KNTPILICSKGIEKSSLKFPSEIVNEILPNN----------PIAILSGPSFAKEIAE 144 (326)
T ss_pred H-HHHHHHHHHHHHhcCC-----CCCEEEEEEcCeeCCCCccHHHHHHHHcCCC----------ceEeecCCcHHHHHHc
Confidence 7 588998887765 443 233444455544221 12233332210 1234445532211111
Q ss_pred hcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 018506 185 EAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA-----------------VSMLGVSEALTL 247 (355)
Q Consensus 185 ~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~-----------------~~~~~~~Ea~~l 247 (355)
.......+.|.+.+..+.+.++|+.-+.+++...++-...|.|++-|.+.. .+..++.|+..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v 224 (326)
T PRK14620 145 KLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTL 224 (326)
T ss_pred CCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 112223445556666777888887777777777888788899999887533 256788899999
Q ss_pred HHHcCC--CHHHHHHHHHhcCC--CcccccCCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHH
Q 018506 248 GQSLGI--SASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLT 321 (355)
Q Consensus 248 a~~~Gi--~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~ 321 (355)
+++.|. ++++++++..-++. .+.....++...+.. +|...++-....-+.-.....++.++++++++|+++|++
T Consensus 225 ~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~ 304 (326)
T PRK14620 225 YSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPIC 304 (326)
T ss_pred HHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHH
Confidence 999997 78888533222111 001001111100000 000000000000011223344568999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcHHHHHHHHh
Q 018506 322 SQAQDIYAKLCENGHDSKDFSCVFQHYY 349 (355)
Q Consensus 322 ~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 349 (355)
+.+++++ +++.+...+++.++
T Consensus 305 ~~l~~~~-------~~~~~~~~~~~~~~ 325 (326)
T PRK14620 305 ESIYNLL-------YENISLEKTISVIL 325 (326)
T ss_pred HHHHHHH-------hCCCCHHHHHHHHh
Confidence 9999998 46666677666553
No 45
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.82 E-value=4.2e-19 Score=174.24 Aligned_cols=250 Identities=15% Similarity=0.160 Sum_probs=166.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-----------HhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~ 99 (355)
...||+|||+|.||..||..|+++||+|++||++++.++.. .+.| +..++++++ +
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 34689999999999999999999999999999999987643 3333 345677765 4
Q ss_pred hcCCEEEEeCCCchHHHHHhcCC-CccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-AP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p 176 (355)
.+||+||.|+|++.+++..++.. ...+ +++.++. |+|+.++. ++.+.+.+ .....|.||++ +|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~-----~~~~IlasnTStl~i~---~iA~~~~~------p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELC-----PADTIIASNTSSLSIT---AIAAGLAR------PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhC-----CCCeEEEECCCCCCHH---HHHHhcCc------ccceEEEeccCccc
Confidence 69999999999999999876542 2222 2333433 55555554 34444421 11223489999 56
Q ss_pred CCCChHHHhcCceEEEecC---CHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018506 177 VSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 252 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg---~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 252 (355)
++. ++.+++| ++++++.+.++++.+|+.++++++ .|. +.|.+.. ..++|++.++++.+
T Consensus 149 v~~---------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~~---~~~~EA~~l~e~g~ 210 (503)
T TIGR02279 149 VMA---------LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVAR---PYYAEALRALEEQV 210 (503)
T ss_pred cCc---------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHHH---HHHHHHHHHHHcCC
Confidence 652 5778888 999999999999999999999997 553 4455443 46899999999999
Q ss_pred CCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH-HH-hCCCChHHHHHHHHHHH
Q 018506 253 ISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA-KE-VGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 253 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a-~~-~gv~~pi~~~~~~~~~~ 330 (355)
++++++.+++..+.+.. ..|+ .+ .|+ .+++....-.....+.. .+ .-.|.++.+..++.-+.
T Consensus 211 a~~~~ID~al~~~~G~~-----mGPf-~l-------~D~---~Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~l 274 (503)
T TIGR02279 211 AAPAVLDAALRDGAGFP-----MGPF-EL-------TDL---IGHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRL 274 (503)
T ss_pred CCHHHHHHHHHhcCCCC-----cCHH-HH-------HHH---hhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCC
Confidence 99999999998654321 0110 00 011 11222111111111111 11 11345666767666677
Q ss_pred HHHCCCCCCcHH
Q 018506 331 LCENGHDSKDFS 342 (355)
Q Consensus 331 ~~~~g~g~~d~~ 342 (355)
+.+.|.|..||.
T Consensus 275 G~KtG~GfY~y~ 286 (503)
T TIGR02279 275 GRKSGLGVYDYR 286 (503)
T ss_pred ccccCCEeeeCC
Confidence 778888888884
No 46
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.81 E-value=1.3e-18 Score=158.50 Aligned_cols=247 Identities=18% Similarity=0.214 Sum_probs=168.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+ .|+..++++.++++++|+||+|+| |+++++++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH
Confidence 689999999999999999999885 69999999999988875 677777788899999999999999 579999987
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SED 198 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~ 198 (355)
.+.+.++ ++++||+...+.+- ..+.+.++.. . ..+-..|. .+.....|...+..+. +++
T Consensus 82 ~l~~~~~-----~~~lvISi~AGi~i--~~l~~~l~~~-----~-----~vvR~MPN--~~~~vg~g~t~~~~~~~~~~~ 142 (272)
T PRK12491 82 QIKDQIK-----NDVIVVTIAAGKSI--KSTENEFDRK-----L-----KVIRVMPN--TPVLVGEGMSALCFNEMVTEK 142 (272)
T ss_pred HHHHhhc-----CCcEEEEeCCCCcH--HHHHHhcCCC-----C-----cEEEECCC--hHHHHcCceEEEEeCCCCCHH
Confidence 7654442 34688877766543 4555555310 0 01122232 2233344543333332 567
Q ss_pred HHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCC
Q 018506 199 AYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSAR 268 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~ 268 (355)
..+.++.+|+.+|.. +.+.+ .|+++++ +..+.|++.- +.+.|++.++..+++.++...
T Consensus 143 ~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf-----------~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G 210 (272)
T PRK12491 143 DIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAY-----------VYMFIEAMADAAVLGGMPRKQAYKFAAQAVLG 210 (272)
T ss_pred HHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788999999999985 44432 2444444 3445666665 999999999999999876532
Q ss_pred cc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 269 CW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 269 s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
+. ........|..+ .+...+||.+. ...++..++.|+.--+.+++.+.++++.+.+
T Consensus 211 ~a~ll~~~~~~p~~l----~~~V~sPGGtT-------~~gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 211 SAKMVLETGIHPGEL----KDMVCSPGGTT-------IEAVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHHHHhcCCCHHHH----HHhCCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 21 111111112222 12344565433 2578888899999999999999998887753
No 47
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.81 E-value=1.9e-18 Score=160.51 Aligned_cols=261 Identities=14% Similarity=0.181 Sum_probs=170.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----------CCCCHHHHhhcCCEEEEeCCCchH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----------~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
|||+|||+|.||+.+|..|+++||+|++++|++++.+.+++.|.. .+++..++ +.+|+||+++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 689999999999999999999999999999998888888776652 24455555 8999999999975 7
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChHHHhcCceEEE
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM 192 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~~~~~g~~~~~ 192 (355)
+++++..+.+.+. ++++||...++. ...+.+.+.++...+. .+ ..+..+-.. +.......+. +.
T Consensus 79 ~~~~~~~l~~~l~-----~~~~iv~~~nG~-~~~~~l~~~~~~~~i~--~~----~~~~~~~~~~p~~v~~~~~g~--~~ 144 (304)
T PRK06522 79 LPAALPSLAPLLG-----PDTPVLFLQNGV-GHLEELAAYIGPERVL--GG----VVTHAAELEGPGVVRHTGGGR--LK 144 (304)
T ss_pred HHHHHHHHhhhcC-----CCCEEEEecCCC-CcHHHHHHhcCcccEE--EE----EEEEeeEecCCCEEEEcCCCC--EE
Confidence 8888887665553 334666666653 2224455544321111 00 111111111 1111122233 22
Q ss_pred ecC---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Q 018506 193 VGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLG 248 (355)
Q Consensus 193 ~gg---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~la 248 (355)
+|. +.+..+.+.++|+..+..+....++-...|.|++.|.... ....++.|+..++
T Consensus 145 ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 224 (304)
T PRK06522 145 IGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVA 224 (304)
T ss_pred EeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHH
Confidence 332 2234677888899888877777778899999999886443 2445688999999
Q ss_pred HHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 018506 249 QSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQD 326 (355)
Q Consensus 249 ~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~ 326 (355)
++.|++ .+.+.+.+....... .....++..++..|+..+-++..| ++++.++++|+++|.++.+++
T Consensus 225 ~a~G~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~ 292 (304)
T PRK06522 225 EAEGVHLSVEEVREYVRQVIQKT-AANTSSMLQDLEAGRPTEIDAIVG-----------YVLRRGRKHGIPTPLNDALYG 292 (304)
T ss_pred HHcCCCCChHHHHHHHHHHhhcc-CCCCchHHHHHHcCCCcccchhcc-----------HHHHHHHHcCCCCcHHHHHHH
Confidence 999975 344444443321110 001112234445566666665544 699999999999999999999
Q ss_pred HHHHHHHC
Q 018506 327 IYAKLCEN 334 (355)
Q Consensus 327 ~~~~~~~~ 334 (355)
+++..++.
T Consensus 293 ~~~~~~~~ 300 (304)
T PRK06522 293 LLKAKESE 300 (304)
T ss_pred HHHHHHHh
Confidence 98776553
No 48
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.80 E-value=9e-19 Score=162.87 Aligned_cols=262 Identities=13% Similarity=0.150 Sum_probs=167.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-------------CCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|.. ..++..++.+.+|+||+|+|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 7899999999999999999999999999999 8888888765431 2345566668899999999975
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
++++++..+.+.+. ++++|+...++. ...+.+.+.++...+. .++.+..++..++......+.-.+.
T Consensus 80 -~~~~~~~~l~~~~~-----~~~~ii~~~nG~-~~~~~l~~~~~~~~v~------~g~~~~~~~~~~~g~v~~~~~~~~~ 146 (305)
T PRK12921 80 -QLDAAIPDLKPLVG-----EDTVIIPLQNGI-GQLEQLEPYFGRERVL------GGVVFISAQLNGDGVVVQRADHRLT 146 (305)
T ss_pred -CHHHHHHHHHhhcC-----CCCEEEEeeCCC-ChHHHHHHhCCcccEE------EEEEEEEEEECCCeEEEEcCCCcEE
Confidence 77888876655442 345666666653 2234555555431110 0133343333321111111222334
Q ss_pred ecC----CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 018506 193 VGG----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTL 247 (355)
Q Consensus 193 ~gg----~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~l 247 (355)
+|. ..+..+.+.++|...+..+....++-...|.|++.|...+ ....++.|+..+
T Consensus 147 iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v 226 (305)
T PRK12921 147 FGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAV 226 (305)
T ss_pred EcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 442 2356677888888888777777788899999999996543 245678899999
Q ss_pred HHHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHH
Q 018506 248 GQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 248 a~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
+++.|++ .+...+.+..-... ......++..++..++..+-++. .+.++++++++|+++|.++.++
T Consensus 227 ~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~ 294 (305)
T PRK12921 227 ARAEGAPLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRPLEIDHL-----------QGVLLRRARAHGIPTPILDTVY 294 (305)
T ss_pred HHHcCCCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCcccHHHH-----------HHHHHHHHHHhCCCCcHHHHHH
Confidence 9999986 33444433321100 00000011223333333333332 2479999999999999999999
Q ss_pred HHHHHHHH
Q 018506 326 DIYAKLCE 333 (355)
Q Consensus 326 ~~~~~~~~ 333 (355)
++++....
T Consensus 295 ~~~~~~~~ 302 (305)
T PRK12921 295 ALLKAYEA 302 (305)
T ss_pred HHHHHHhh
Confidence 99877543
No 49
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.80 E-value=1e-18 Score=163.22 Aligned_cols=261 Identities=16% Similarity=0.103 Sum_probs=182.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCC--------CcEEEEeC-----ChhHHHHHHhC--------C------CCCCCCHHHHh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVA 99 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~ 99 (355)
||+|||+|+||+++|..|+++| |+|.+|.| +++..+.+++. + +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 55555555542 1 23457888999
Q ss_pred hcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HH--HHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQ--TSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~--~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
+++|+||+++|+ +.+++++..+.+.+. +++++|.++.+. +. +...+.+.+.+. + + ..+.++.+|
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~-l----~--~~~~~lsGP 147 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEE-L----G--IPCGVLSGA 147 (342)
T ss_pred hcCCEEEEECCh-HHHHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHH-h----C--CCeEEeeCc
Confidence 999999999997 699999988776663 345777777665 33 333445544431 1 1 126678888
Q ss_pred CCCChHHHhcCceEEEecCC----HHHHHHHHHHHHHcCCCeEEeCC-cch--HHHHH--------------HHHHHHHH
Q 018506 177 VSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG-AGN--GAAAK--------------ICNNLTMA 235 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg~----~~~~~~v~~ll~~~g~~~~~~g~-~g~--a~~~K--------------l~~n~~~~ 235 (355)
.+.........+...+.+.+ .+..+.++.+|+.-..+++...+ .|. +-++| +..|.-.+
T Consensus 148 ~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aa 227 (342)
T TIGR03376 148 NLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAA 227 (342)
T ss_pred chHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 87666555556666677777 78899999999865555554433 222 34444 45577777
Q ss_pred HHHHHHHHHHHHHHHcCCCHH--HHHHHHHhcCC--CcccccCCCCCCCcccCCCCCCCCCCCcchh------------h
Q 018506 236 VSMLGVSEALTLGQSLGISAS--TLTKILNSSSA--RCWSSDSYNPVPGVMEGVPASRNYGGGFASK------------L 299 (355)
Q Consensus 236 ~~~~~~~Ea~~la~~~Gi~~~--~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 299 (355)
.+...+.|+..+++++|-+++ +++++..-++. ++.. .+++..+..-+. .|.+++ .
T Consensus 228 litrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~-------~g~~~~~~~~~~~~~~~vE 298 (342)
T TIGR03376 228 VMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAK-------TGKSLEELEKELLNGQSLQ 298 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHh-------cCCCHHHHHHhhcCCcEEe
Confidence 889999999999999999887 88887776663 2322 333333321110 022222 2
Q ss_pred HHHHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Q 018506 300 MAKDLNLALASAKEVGVD--CPLTSQAQDIYA 329 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv~--~pi~~~~~~~~~ 329 (355)
....+..+.+++++.+++ +|+++++++++.
T Consensus 299 G~~t~~~~~~l~~~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 299 GVATAKEVHELLKNKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred eHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHh
Confidence 344456789999999999 999999999985
No 50
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.4e-18 Score=159.44 Aligned_cols=254 Identities=16% Similarity=0.117 Sum_probs=163.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCCC-------------CCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMGV-------------PTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g~-------------~~~~s~~e~~ 99 (355)
.+.||||||+|.||..||..|+.+||+|++||++++.++. +.+.|. ..+++. +.+
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~ 82 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF 82 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh
Confidence 3468999999999999999999999999999999998766 333332 256677 557
Q ss_pred hcCCEEEEeCCCchHHHHHhcCC-CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGP-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PV 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv 177 (355)
++||+||.|+|++.+++..+... ...+ .+++.++++.|++.|.+... ..... ..++-+.||+++ |+
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~----~~~~~il~snTS~~~~~~la--~~~~~------~~r~~g~hf~~P~~~ 150 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKVV----TDPDAVLASNTSSIPIMKLA--AATKR------PGRVLGLHFFNPVPV 150 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHhh----CCCCcEEEECCCCCCHHHHH--hhcCC------CccEEEEecCCCccc
Confidence 89999999999999999876542 2222 02567887777776664333 32211 111224788884 44
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHH-HcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~-~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
++.. ++....+.++++++.+.+++. .+|+.++.+++ +|. +.|.+. ...++|++.+.++.-.++
T Consensus 151 ~~lv------Elv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi~---~~~~~Ea~~ll~eGv~~~ 215 (286)
T PRK07819 151 LPLV------ELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNALL---VPYLLSAIRMVESGFATA 215 (286)
T ss_pred CceE------EEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHHH---HHHHHHHHHHHHhCCCCH
Confidence 4443 223333459999999999988 59999998887 443 335433 445789999987766789
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHC
Q 018506 256 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~gv~~pi~~~~~~~~~~~~~~ 334 (355)
+++..++..+.+... .| + .+....+++...+.+..+.+...+ .-.+.|+++...+.-..+.+.
T Consensus 216 ~dID~~~~~g~G~p~-----Gp----f-------~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~ 279 (286)
T PRK07819 216 EDIDKAMVLGCAHPM-----GP----L-------RLSDLVGLDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKS 279 (286)
T ss_pred HHHHHHHHhCCCCCC-----CH----H-------HHHHHhccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccC
Confidence 999988876543210 11 0 011112334444433333322211 223456666666666666677
Q ss_pred CCCCCcH
Q 018506 335 GHDSKDF 341 (355)
Q Consensus 335 g~g~~d~ 341 (355)
|.|..||
T Consensus 280 g~GfY~y 286 (286)
T PRK07819 280 GRGFYTY 286 (286)
T ss_pred CCEeccC
Confidence 7777665
No 51
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.80 E-value=6.9e-18 Score=154.57 Aligned_cols=193 Identities=18% Similarity=0.287 Sum_probs=142.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|||+|||+|.||.+|+..|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|+|.. .+.+++.++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHHHH
Confidence 589999999999999999999996 689999999998888777763 455777765 599999999975 666777665
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CCCCC----hHHH----hcCceEEEe
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAA----EAGTLTFMV 193 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~----~~~~----~~g~~~~~~ 193 (355)
.+ +. ++++|+|++++.+...+.+.+.. . ..|+.. |+.|+ +..+ ..|...+++
T Consensus 79 ~~-l~-----~~~iv~d~gs~k~~i~~~~~~~~--------~-----~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~ 139 (275)
T PRK08507 79 LD-IK-----ENTTIIDLGSTKAKIIESVPKHI--------R-----KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLC 139 (275)
T ss_pred hc-cC-----CCCEEEECccchHHHHHHHHHhc--------C-----CCEEecCCcCcCchhhHHhccHHHhCCCeEEEe
Confidence 44 32 45799999887766554443321 0 234554 88764 3332 257767777
Q ss_pred c---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 018506 194 G---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 264 (355)
Q Consensus 194 g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~ 264 (355)
+ .+++.++.++++++.+|.+++++++.+....+++++++.. ....++++++. .+.+.+.+.++...
T Consensus 140 ~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 140 DVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 5 4677899999999999999999999999999999999976 33444455542 36666666555543
No 52
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.80 E-value=6.2e-18 Score=151.10 Aligned_cols=246 Identities=21% Similarity=0.248 Sum_probs=171.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+|||||||+|+||.+|+..|.++| .+|++.+|++++.+.+.+ .|+..+++..++..++|+||++|+ |+.+++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHH
Confidence 589999999999999999999999 589999999999975554 566667788899999999999997 68999999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
..+.+ .. ++++||....+.+- ..+.++++.. ..+--.|. .+.....|...+..+ .++
T Consensus 80 ~~l~~-~~-----~~~lvISiaAGv~~--~~l~~~l~~~-----------~vvR~MPN--t~a~vg~g~t~i~~~~~~~~ 138 (266)
T COG0345 80 SKLKP-LT-----KDKLVISIAAGVSI--ETLERLLGGL-----------RVVRVMPN--TPALVGAGVTAISANANVSE 138 (266)
T ss_pred HHhhc-cc-----CCCEEEEEeCCCCH--HHHHHHcCCC-----------ceEEeCCC--hHHHHcCcceeeecCccCCH
Confidence 88766 22 45677777665543 4566665311 11111232 223344455343333 267
Q ss_pred HHHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSA 267 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~ 267 (355)
+..+.+.++|+.+|.. +.+.+ .|+++++ +..+.|++.. +.+.|++.++..+++.++..
T Consensus 139 ~~~~~v~~l~~~~G~v-~~v~E~~~da~TaisGSgPAy-----------v~~~iEal~~agv~~Gl~~~~A~~l~~~t~~ 206 (266)
T COG0345 139 EDKAFVEALLSAVGKV-VEVEESLMDAVTALSGSGPAY-----------VFLFIEALADAGVRLGLPREEARELAAQTVA 206 (266)
T ss_pred HHHHHHHHHHHhcCCe-EEechHHhhHHHHHhcCCHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8888999999999974 43333 3555555 4557788887 99999999999999987653
Q ss_pred Ccc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 268 RCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 268 ~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
.+. +.......|..+ .++..+||.+.. ..++..++.|+..-+.+++.+.++++.+.|
T Consensus 207 Gaakll~e~~~~p~~L----r~~VtSPGGtTi-------agl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 207 GAAKLLLESGEHPAEL----RDQVTSPGGTTI-------AGLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred HHHHHHHhcCCCHHHH----HHhCcCCCchHH-------HHHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 221 111111122222 234556765544 456666788999999999999999888765
No 53
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.1e-17 Score=154.81 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=145.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C---------CCCCCCCHHHHhhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~a 102 (355)
+...||+|||+|.||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++|
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a 84 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC
Confidence 34578999999999999999999999999999999886654322 1 235567888999999
Q ss_pred CEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh
Q 018506 103 DVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 181 (355)
|+||.++|+..+++..+.. +...+ +++ .|+.++|+. ....++.+.+.. ..++-+.||.++|.....
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~-----~~~-aIlaSnTS~-l~~s~la~~~~~------p~R~~g~HffnP~~~~pL 151 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAA-----KPD-AIIASSTSG-LLPTDFYARATH------PERCVVGHPFNPVYLLPL 151 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhC-----CCC-eEEEECCCc-cCHHHHHHhcCC------cccEEEEecCCccccCce
Confidence 9999999999888876653 22222 234 466555553 333456555432 222334788888765554
Q ss_pred HHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeC-C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018506 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG-G-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 259 (355)
Q Consensus 182 ~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g-~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~ 259 (355)
.....+.-+ ++++++.+..+++.+|+.++.+. + +| .+.|.+. .+++.|++.+.++...+++++.
T Consensus 152 VEVv~g~~T-----~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~---~a~~~EA~~lv~eGvas~edID 217 (321)
T PRK07066 152 VEVLGGERT-----APEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLL---EALWREALHLVNEGVATTGEID 217 (321)
T ss_pred EEEeCCCCC-----CHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHH---HHHHHHHHHHHHhCCCCHHHHH
Confidence 444444434 89999999999999999888874 4 44 2446644 3457999999999889999999
Q ss_pred HHHHhcCCCcc
Q 018506 260 KILNSSSARCW 270 (355)
Q Consensus 260 ~~~~~~~~~s~ 270 (355)
.++..+.+..|
T Consensus 218 ~a~~~g~g~r~ 228 (321)
T PRK07066 218 DAIRFGAGIRW 228 (321)
T ss_pred HHHHhCCCCCc
Confidence 99988776554
No 54
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.80 E-value=1.2e-18 Score=161.21 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=134.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCC------------CCCCCCHHHHhhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEA 101 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~ 101 (355)
+.||+|||+|.||.+||..|+++|++|++||+++++++. +.+.| ....++..+++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 467999999999999999999999999999999988753 32222 1223334467899
Q ss_pred CCEEEEeCCCchHHHHHhcC-CCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 102 SDVVITMLPSSSHVLDVYNG-PNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~-~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
||+||+|+|++.+++..+.. +...+ .++.+|+ ++|+.++.... +.+.. ...+.++||+++|..+
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~-----~~~~il~s~tS~i~~~~l~---~~~~~------~~r~~g~h~~~pp~~~ 149 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRIC-----KPSAILASNTSSISITRLA---SATQR------PQQVIGMHFMNPPPIM 149 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhC-----CCCcEEEECCCCCCHHHHH---hhcCC------CcceEEEeccCCcccC
Confidence 99999999988888776543 22222 2445664 78887766533 33321 1111237889888764
Q ss_pred ChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 180 GVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
. ++.++. .+++.++.++++++.+|+.++++++ .| . +.|.+. ...++|++.+..+...++
T Consensus 150 ~--------lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~-i~nri~---~~~~~ea~~~~~~gv~~~ 212 (295)
T PLN02545 150 K--------LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----F-IVNRIL---MPMINEAFYALYTGVASK 212 (295)
T ss_pred c--------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----H-HHHHHH---HHHHHHHHHHHHcCCCCH
Confidence 3 234443 4899999999999999999998887 34 2 334433 234789999988877889
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 213 ~~iD~~~~~g~ 223 (295)
T PLN02545 213 EDIDTGMKLGT 223 (295)
T ss_pred HHHHHHHHhcc
Confidence 99988876543
No 55
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.79 E-value=9.3e-18 Score=159.61 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=142.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.+++|+||| +|.||..+|..|.++||+|++|||++. +++.++++++|+||+|+|.. ....++..+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIARL 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHHH
Confidence 558899998 999999999999999999999998631 35677888999999999986 556667655
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHHhcCceEEEecC-CHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAY 200 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~~~g~~~~~~gg-~~~~~ 200 (355)
.+ + +++++|+|++++++.....+.+... ..|+ .+|++|+......+...++.++ +++.+
T Consensus 163 ~~-l-----~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 163 PP-L-----PEDCILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred hC-C-----CCCcEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 44 3 2578999999998877666655421 1355 7888887666667777777776 66788
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 260 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~ 260 (355)
+.+.++++.+|.+++++++.+....+++++-+ .++.+++++..+++ .+.+.+.+.+
T Consensus 224 ~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 224 QWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999999999999999844 55566778887766 7888776543
No 56
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.79 E-value=2.1e-18 Score=158.14 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=131.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||+|||+|.||..++..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|.. .+.+++.++.+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~~~l~~ 79 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPSEQLIP 79 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHHHHHHH
Confidence 689999999999999999999999999999999998888877642 3333345678999999999965 56666665444
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCCh-HHH-------hcCceEEEe--
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAA-------EAGTLTFMV-- 193 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~-~~~-------~~g~~~~~~-- 193 (355)
.+. ++.+|+|++++++...+.+.+.. ..|+. +|+.|+. ... ..+...+++
T Consensus 80 ~l~-----~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~ 140 (279)
T PRK07417 80 ALP-----PEAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPT 140 (279)
T ss_pred hCC-----CCcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccC
Confidence 332 45789999998877655544332 12454 6877664 222 234434443
Q ss_pred -cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHH
Q 018506 194 -GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 239 (355)
Q Consensus 194 -gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~ 239 (355)
+.+++.++.++++++.+|.+++++++...+..+++++|+.......
T Consensus 141 ~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 141 ENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA 187 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH
Confidence 2578899999999999999999999999999999999987665543
No 57
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=8.1e-18 Score=156.92 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=165.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~aDiVi~~ 108 (355)
+..|||+|||+|.||+.+|..|+++||+|+++.|++. +.+.+.|.. ..+++ +....+|+||+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 4568999999999999999999999999999999763 344443321 11222 345689999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCC--hHHHhc
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEA 186 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~--~~~~~~ 186 (355)
+|.. ++.+++..+.+.+. ++.+++...++. ...+.+.+.++...+.. ++.++.+...+. ......
T Consensus 80 vK~~-~~~~~~~~l~~~~~-----~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~------g~~~~~a~~~~pg~v~~~~~ 146 (313)
T PRK06249 80 LKTT-ANALLAPLIPQVAA-----PDAKVLLLQNGL-GVEEQLREILPAEHLLG------GLCFICSNRVGPGVIHHLAY 146 (313)
T ss_pred ecCC-ChHhHHHHHhhhcC-----CCCEEEEecCCC-CcHHHHHHHCCCCcEEE------EeeeEeEecCCCeEEEECCC
Confidence 9986 66777776665553 234566665553 33355666655322111 122332222221 111222
Q ss_pred CceEEE-ecC-C-----HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHH
Q 018506 187 GTLTFM-VGG-S-----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSM 238 (355)
Q Consensus 187 g~~~~~-~gg-~-----~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~ 238 (355)
+...+- ..+ + .+..+.+.++|+..|..+....++....|.|++.|...+ ...
T Consensus 147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~ 226 (313)
T PRK06249 147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIR 226 (313)
T ss_pred CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHH
Confidence 332221 112 2 466778889999999888888899999999999886543 245
Q ss_pred HHHHHHHHHHHHcCCC--HH---HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 018506 239 LGVSEALTLGQSLGIS--AS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 313 (355)
Q Consensus 239 ~~~~Ea~~la~~~Gi~--~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 313 (355)
.++.|+..++++.|++ .+ .+.+.+..... ..-++..++.+|+..+-++.. +.+++++++
T Consensus 227 ~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~tEid~i~-----------G~vv~~a~~ 290 (313)
T PRK06249 227 ALMAEVIQGAAACGHTLPEGYADHMLAVTERMPD-----YRPSMYHDFEEGRPLELEAIY-----------ANPLAAARA 290 (313)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCC-----CCChHHHHHHCCCcccHHHHh-----------hHHHHHHHH
Confidence 5788999999999986 22 22333222111 011122334444444444433 479999999
Q ss_pred hCCCChHHHHHHHHHHHHHHC
Q 018506 314 VGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 314 ~gv~~pi~~~~~~~~~~~~~~ 334 (355)
+|+++|+++.++++++..+..
T Consensus 291 ~Gi~~P~~~~l~~~l~~~e~~ 311 (313)
T PRK06249 291 AGCAMPRVEMLYQALEFLDRR 311 (313)
T ss_pred hCCCCcHHHHHHHHHHHHHhh
Confidence 999999999999988876543
No 58
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=4.9e-18 Score=156.78 Aligned_cols=194 Identities=18% Similarity=0.252 Sum_probs=135.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh--------------CC-------------CCCCCCHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MG-------------VPTKETPFE 97 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e 97 (355)
..||+|||+|.||..||..|+++|++|++||++++.++...+ .+ +..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 468999999999999999999999999999999988764221 12 1233444 5
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-C
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-A 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~ 175 (355)
+++++|+||+|+|++..++. ++..+...+. ++++++..+++. ...++.+.+.. ..++.+.||.+ +
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~-----~~~il~S~tsg~--~~~~la~~~~~------~~r~ig~hf~~P~ 148 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVS-----PETIIASNTSGI--MIAEIATALER------KDRFIGMHWFNPA 148 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEEcCCCC--CHHHHHhhcCC------cccEEEEecCCCc
Confidence 67899999999998765454 4444433332 445665443332 33456555432 11122478888 4
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|+.+.. ....+..+ ++++++.+.++++.+|+.++++++.+.....|+..|+ ++|++.+.++--.++
T Consensus 149 ~~~~~v-Ev~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~ 214 (291)
T PRK06035 149 PVMKLI-EVVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATI 214 (291)
T ss_pred ccCccE-EEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCH
Confidence 455543 34456655 8999999999999999999999987666666666554 679988886644679
Q ss_pred HHHHHHHHhcC
Q 018506 256 STLTKILNSSS 266 (355)
Q Consensus 256 ~~~~~~~~~~~ 266 (355)
+++..++..+.
T Consensus 215 ~~iD~~~~~~~ 225 (291)
T PRK06035 215 KDIDEMCKLAF 225 (291)
T ss_pred HHHHHHHhhcC
Confidence 99998886543
No 59
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=6.3e-18 Score=155.71 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=130.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-------------------------CCCCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------------g~~~~~s~~e~ 98 (355)
..+||+|||+|.||..+|..|+.+||+|++||++++.++...+. ++..+++.+++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 35789999999999999999999999999999998876654321 23356788888
Q ss_pred hhcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 99 AEASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
++++|+||.|+|++.+++ .++.++.+.+ ++++++ .++|+..+.. +.+.+.. ..++.+.||.+++
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~-----~~~~ii~sntSt~~~~~---~~~~~~~------~~r~vg~Hf~~p~ 147 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVA-----PEKTIFATNSSTLLPSQ---FAEATGR------PEKFLALHFANEI 147 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhC-----CCCCEEEECcccCCHHH---HHhhcCC------cccEEEEcCCCCC
Confidence 899999999999875544 4454443333 244566 4555554543 3333221 1111225555544
Q ss_pred CCCChHHHhcCceEEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 177 VSGGVLAAEAGTLTFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
... .+..++ ..++++++.+.++++.+|+.++.+..-..+. +.|.+. ...++|++.+.++...
T Consensus 148 ~~~--------~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf----i~nRi~---~~~~~ea~~l~~~g~a 212 (287)
T PRK08293 148 WKN--------NTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY----ILNSLL---VPFLSAALALWAKGVA 212 (287)
T ss_pred CcC--------CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH----hHHHHH---HHHHHHHHHHHHcCCC
Confidence 322 222332 3488999999999999999888775312222 335543 3446899999888778
Q ss_pred CHHHHHHHHHhcCC
Q 018506 254 SASTLTKILNSSSA 267 (355)
Q Consensus 254 ~~~~~~~~~~~~~~ 267 (355)
+++++..++..+.+
T Consensus 213 ~~~~iD~a~~~~~g 226 (287)
T PRK08293 213 DPETIDKTWMIATG 226 (287)
T ss_pred CHHHHHHHHHhccC
Confidence 89999988876543
No 60
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=3.2e-17 Score=148.80 Aligned_cols=242 Identities=16% Similarity=0.163 Sum_probs=157.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCc---EEEEeCChhHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~---V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|||||||+|+||.+|++.|.+.|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+| ++.+.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence 5899999999999999999999864 58899999999888764 46677889999999999999999 578888886
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAY 200 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg~~~~~ 200 (355)
.+. + .++++||++.... ..+.+.+.+.. . ...+...|.. +.....+ .+.++.++
T Consensus 80 ~l~--~-----~~~~~vis~~ag~--~~~~l~~~~~~------~----~~~~r~~P~~--~~a~~~g-~t~~~~~~---- 133 (258)
T PRK06476 80 ALR--F-----RPGQTVISVIAAT--DRAALLEWIGH------D----VKLVRAIPLP--FVAERKG-VTAIYPPD---- 133 (258)
T ss_pred Hhc--c-----CCCCEEEEECCCC--CHHHHHHHhCC------C----CCEEEECCCC--hhhhCCC-CeEecCCH----
Confidence 541 2 1456777766543 33556665532 1 1345566652 2222233 35555543
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-c-cc
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL-----TMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-S-SD 273 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~-----~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~-~-~~ 273 (355)
+.++++|+.+|..++ +++. |...++ ..+.++.++.|+..++++.|+++++..+++......+. . ..
T Consensus 134 ~~~~~l~~~lG~~~~-~~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~ 206 (258)
T PRK06476 134 PFVAALFDALGTAVE-CDSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVR 206 (258)
T ss_pred HHHHHHHHhcCCcEE-ECCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999998665 4432 222222 33344456778888999999999999998886542211 1 00
Q ss_pred CCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 274 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.....++.+. +...+||.+. ...++..++.|+.-.+.+++.+.++++.
T Consensus 207 ~~~~~~~~l~----~~v~spgGtT-------~~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 207 STKTDFSALS----REFSTKGGLN-------EQVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred cCCCCHHHHH----HhCCCCCchH-------HHHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 1111112221 2334554432 2467788888887777777666666543
No 61
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.2e-17 Score=154.37 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=131.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------CC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~ 99 (355)
..+||+|||+|.||..||..|+++|++|++||+++++++...+ .| +..+++.+ .+
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 81 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL 81 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence 4578999999999999999999999999999999988766432 12 23455664 56
Q ss_pred hcCCEEEEeCCCchHHHHH-hcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-C
Q 018506 100 EASDVVITMLPSSSHVLDV-YNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-P 176 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~v-l~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p 176 (355)
+++|+||+|+|+..+++.. +.++.+.++ ++++++ ++|+..+. .+.+.+.. ..++.+.||+++ |
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~-----~~~ii~s~ts~~~~s---~la~~~~~------~~r~~g~h~~~p~~ 147 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLK-----PEAILATNTSSISIT---RLASATDR------PERFIGIHFMNPVP 147 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------cccEEEeeccCCcc
Confidence 8999999999987666544 443333332 445665 66666554 35554421 111123678873 3
Q ss_pred CCCChHHHhcCceEEE--ecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 177 VSGGVLAAEAGTLTFM--VGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~--~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
+.... -++ .+++++.++.+.++++.+|+.++++++.+ -+++++++.. .++|++.+..+.-.+
T Consensus 148 ~~~~v--------ei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~~----~~~ea~~~~~~g~~~ 211 (292)
T PRK07530 148 VMKLV--------ELIRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILLP----MINEAIYTLYEGVGS 211 (292)
T ss_pred cCceE--------EEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHHH----HHHHHHHHHHhCCCC
Confidence 33221 222 24689999999999999999999988744 2555666443 367999887774458
Q ss_pred HHHHHHHHHhc
Q 018506 255 ASTLTKILNSS 265 (355)
Q Consensus 255 ~~~~~~~~~~~ 265 (355)
++++..++..+
T Consensus 212 ~~~iD~~~~~g 222 (292)
T PRK07530 212 VEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHhC
Confidence 89988888654
No 62
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=6.3e-17 Score=147.66 Aligned_cols=254 Identities=18% Similarity=0.216 Sum_probs=163.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---CcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||+|||+|+||..++..|.++| ++|.+|+|++++.+.+.+. ++....+..++++++|+||+|+|. ..+++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~ 80 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLS 80 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHH
Confidence 689999999999999999999999 7899999999999888774 777778888888999999999986 47888887
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChHHHhcCceEEEec--CCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
.+.+.+ +++|+.++++.+. ..+.+.++. +.+++. .|. .+.....+...+..+ .++
T Consensus 81 ~l~~~~-------~~~vvs~~~gi~~--~~l~~~~~~-----------~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~ 138 (267)
T PRK11880 81 ELKGQL-------DKLVVSIAAGVTL--ARLERLLGA-----------DLPVVRAMPN--TPALVGAGMTALTANALVSA 138 (267)
T ss_pred HHHhhc-------CCEEEEecCCCCH--HHHHHhcCC-----------CCcEEEecCC--chHHHcCceEEEecCCCCCH
Confidence 654332 2467666665543 345444421 012222 332 233333344334444 378
Q ss_pred HHHHHHHHHHHHcCCCeEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc-cccC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCG-GAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW-SSDS 274 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~-~~~~ 274 (355)
+.++.++.+|+.+|. .+++. +.-.-.+.-+..+...+ +..+.|++.. +.+.|+++++..+++........ ....
T Consensus 139 ~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~~~~~pa~--~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~ 215 (267)
T PRK11880 139 EDRELVENLLSAFGK-VVWVDDEKQMDAVTAVSGSGPAY--VFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLE 215 (267)
T ss_pred HHHHHHHHHHHhCCe-EEEECChHhcchHHHHhcChHHH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999997 45555 32111111122222111 2234555555 78899999999888876532111 0000
Q ss_pred CCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 275 YNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
....++.+. +.-..||.+ ....++..++.|++..+.+++.+.++++.+.+
T Consensus 216 ~~~~~~~l~----~~v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 216 SGEHPAELR----DNVTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred cCCCHHHHH----HhCCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 000111110 111223322 34678889999999999999999999998864
No 63
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=3.4e-17 Score=150.55 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=130.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHH-----------HHHhCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~ 99 (355)
.++||+|||+|.||.++|..|+++|++|++||+++++++ .+.+.| +..+++.+ .+
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~ 80 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DL 80 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 456899999999999999999999999999999999874 333333 23345554 46
Q ss_pred hcCCEEEEeCCCchHHH-HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC-C
Q 018506 100 EASDVVITMLPSSSHVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP-V 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~-~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p-v 177 (355)
++||+||+|+|....++ +++..+.+.++ +++++ .+++.+... ..+.+.+.. ..++.+.||.+++ +
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~-----~~~il-~s~ts~~~~-~~la~~~~~------~~r~ig~h~~~P~~~ 147 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAK-----PEAIL-ATNTSSLSI-TELAAATKR------PDKVIGMHFFNPVPV 147 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCC-----CCcEE-EECCCCCCH-HHHHHhhCC------CcceEEeeccCCccc
Confidence 89999999998776666 56655444432 34455 233333222 245555421 1112236677643 3
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
.... ....+. +.+++..+.+.++++.+|+.++++++. . ..+.|.++ ...++|++.+.++.-.++++
T Consensus 148 ~~~v-ev~~g~-----~t~~e~~~~~~~l~~~lGk~pv~~~d~-~----g~i~~Ri~---~~~~~ea~~~~~~gv~~~~d 213 (282)
T PRK05808 148 MKLV-EIIRGL-----ATSDATHEAVEALAKKIGKTPVEVKNA-P----GFVVNRIL---IPMINEAIFVLAEGVATAED 213 (282)
T ss_pred CccE-EEeCCC-----CCCHHHHHHHHHHHHHcCCeeEEecCc-c----ChHHHHHH---HHHHHHHHHHHHhCCCCHHH
Confidence 2222 222222 248999999999999999999998772 2 23446544 34468999998776678999
Q ss_pred HHHHHHhcC
Q 018506 258 LTKILNSSS 266 (355)
Q Consensus 258 ~~~~~~~~~ 266 (355)
+..++..+.
T Consensus 214 iD~~~~~g~ 222 (282)
T PRK05808 214 IDEGMKLGC 222 (282)
T ss_pred HHHHHHhCC
Confidence 988886543
No 64
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.74 E-value=2.1e-16 Score=153.12 Aligned_cols=196 Identities=18% Similarity=0.261 Sum_probs=145.7
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-hCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
|||+||| +|.||.+++..|.++|++|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|.. .+.+++..+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHHHHHH
Confidence 6899997 899999999999999999999999988865544 357766778888899999999999974 6677776654
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC-CCCCChHHHhcCceEEEecC---CHHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SEDA 199 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-pv~g~~~~~~~g~~~~~~gg---~~~~ 199 (355)
+.+. ++++|+|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +++.
T Consensus 80 ~~l~-----~~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~ 143 (437)
T PRK08655 80 PHVK-----EGSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPW 143 (437)
T ss_pred hhCC-----CCCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHH
Confidence 4442 5679999999988877777766531 2456664 88886555667777777654 5788
Q ss_pred HHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018506 200 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 262 (355)
++.++++|+.+|.+++++++......+ .+.....++.+++.+..+ .+.|++.++...+.
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a 202 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFA 202 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence 899999999999988888875444444 333333444444444443 67799887765444
No 65
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.73 E-value=1.1e-16 Score=148.56 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=167.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCC-----------CCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~-----------~s~~e~~~~aDiVi~~v~~~ 112 (355)
.|||+|||+|.||+.+|..|+++|++|++++|+.++++.+++. |+... ....+.....|+||+|++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 4899999999999999999999999999999998888888753 32110 11112235789999999986
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEE
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 192 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~ 192 (355)
++++++..+.+.+. ++..|+.+.++... .+.+.+.++...+. . +..++.+-..+.-.....+.-.+.
T Consensus 82 -~~~~al~~l~~~l~-----~~t~vv~lQNGv~~-~e~l~~~~~~~~v~--~----g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 82 -DAEPAVASLAHRLA-----PGAELLLLQNGLGS-QDAVAARVPHARCI--F----ASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred -hHHHHHHHHHhhCC-----CCCEEEEEeCCCCC-HHHHHHhCCCCcEE--E----EEeeeceecCCCCEEEEeceEEEE
Confidence 77788877666553 33456666555432 24455555432111 1 122222111111000111111223
Q ss_pred ecC-CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCC
Q 018506 193 VGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA------------------VSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 193 ~gg-~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~la~~~Gi 253 (355)
+|. +.+..+.+.++|...|..+.+..++-...|.|++.|...+ .+..++.|...++++.|+
T Consensus 149 ~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~ 228 (305)
T PRK05708 149 LGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQ 228 (305)
T ss_pred EcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCC
Confidence 342 3345677888888888777778888899999999887543 245667899999999997
Q ss_pred C--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 018506 254 S--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 331 (355)
Q Consensus 254 ~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~ 331 (355)
+ .+.+.+.+....... .....++..++.+|++.+-++..| .+++.++++|+++|.++.++++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~sSM~qD~~~gR~tEid~i~G-----------~vvr~a~~~Gv~~P~~~~l~~~v~~~ 296 (305)
T PRK05708 229 PAAAANLHEEVQRVIQAT-AANYSSMYQDVRAGRRTEISYLLG-----------YACRAADRHGLPLPRLQHLQQRLVAH 296 (305)
T ss_pred CccHHHHHHHHHHHHHhc-cCCCcHHHHHHHcCCceeehhhhh-----------HHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 5 333333333211000 001112334556666666666655 79999999999999999999887766
Q ss_pred HHC
Q 018506 332 CEN 334 (355)
Q Consensus 332 ~~~ 334 (355)
..+
T Consensus 297 ~~~ 299 (305)
T PRK05708 297 LRA 299 (305)
T ss_pred HHh
Confidence 554
No 66
>PRK07680 late competence protein ComER; Validated
Probab=99.72 E-value=3.7e-16 Score=142.95 Aligned_cols=195 Identities=17% Similarity=0.226 Sum_probs=130.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
|+|+|||+|+||.+++..|.++|+ +|++|+|++++.+.+.+. ++..+.++.++++++|+||+|+|. .++++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 689999999999999999999984 799999999998887663 566677888888999999999984 5788888
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCH
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 197 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~ 197 (355)
..+.+.+. ++++|++++++. ..+.+.+.++. . ..+++ | ..+.....|...++.| .++
T Consensus 80 ~~l~~~l~-----~~~~iis~~ag~--~~~~L~~~~~~------~----~~r~~--p--~~~~~~~~G~t~~~~g~~~~~ 138 (273)
T PRK07680 80 QKLAPHLT-----DEHCLVSITSPI--SVEQLETLVPC------Q----VARII--P--SITNRALSGASLFTFGSRCSE 138 (273)
T ss_pred HHHHhhcC-----CCCEEEEECCCC--CHHHHHHHcCC------C----EEEEC--C--ChHHHHhhccEEEeeCCCCCH
Confidence 76554442 356888888754 34556555431 0 12333 2 1233455677555555 466
Q ss_pred HHHHHHHHHHHHcCCCeEEeCCc-chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 018506 198 DAYQAAKPLFLSMGKNTIYCGGA-GNGAAAKICN--NLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 266 (355)
Q Consensus 198 ~~~~~v~~ll~~~g~~~~~~g~~-g~a~~~Kl~~--n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~ 266 (355)
+.++.++++|+.+|. .+++.+. ..+. .-+.. -.+.+.++.++.++. .++.|+++++..+++....
T Consensus 139 ~~~~~~~~ll~~~G~-~~~i~e~~~~~~-~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 139 EDQQKLERLFSNIST-PLVIEEDITRVS-SDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HHHHHHHHHHHcCCC-EEEEChHhcchh-hhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 788999999999995 4555441 1111 10111 112223333333332 2348999999988887653
No 67
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.71 E-value=2.2e-16 Score=145.93 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=174.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC------------CCCCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~------------~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||.|+|+|.||+.++..|+++|++|+++.|++. ++++++.|.. ...+..+....+|+||+++++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~- 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY- 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-
Confidence 7999999999999999999999999999999755 8888876532 1223334556899999999986
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC--CChHHHhcCceE-
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLT- 190 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~--g~~~~~~~g~~~- 190 (355)
++++++..+.+.+. +++.|+..-++. ...+.+.+..++..+. .| +....+-.. |.......|...
T Consensus 79 q~~~al~~l~~~~~-----~~t~vl~lqNG~-g~~e~l~~~~~~~~il--~G----~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 79 QLEEALPSLAPLLG-----PNTVVLFLQNGL-GHEEELRKILPKETVL--GG----VTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred cHHHHHHHhhhcCC-----CCcEEEEEeCCC-cHHHHHHHhCCcceEE--EE----EeeeeeEecCCceEEEecCCcEEE
Confidence 88898888777764 333455444444 3334666666542110 11 111111111 111111122322
Q ss_pred -EEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHHH
Q 018506 191 -FMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTLG 248 (355)
Q Consensus 191 -~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~---------------------~~~~~~Ea~~la 248 (355)
.+.+++++..+.+.++|+..+..+.+..++-...|.|++.|...+. ....+.|...++
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 1223455788899999999998888888899999999999976652 456778999999
Q ss_pred HHcC--CCHH---HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHH
Q 018506 249 QSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 323 (355)
Q Consensus 249 ~~~G--i~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~ 323 (355)
.+.| ++.+ .+............ -++..++..+++.+-||..| ++++.|+++|+++|.++.
T Consensus 227 ~~~g~~~~~~~~~~v~~~~~~~~~~~~----sSM~qDl~~gr~tEid~i~G-----------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 227 RAEGVELPEEVVERVLAVIRATDAENY----SSMLQDLEKGRPTEIDAING-----------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred HhccCCCCHHHHHHHHHHHHhcccccC----chHHHHHHcCCcccHHHHhh-----------HHHHHHHHhCCCCcHHHH
Confidence 9999 4553 33444433321111 12234445555666666544 799999999999999999
Q ss_pred HHHHHHHHHHC
Q 018506 324 AQDIYAKLCEN 334 (355)
Q Consensus 324 ~~~~~~~~~~~ 334 (355)
++++++..+..
T Consensus 292 L~~lvk~~e~~ 302 (307)
T COG1893 292 LYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHh
Confidence 99999987765
No 68
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.71 E-value=3.6e-16 Score=141.86 Aligned_cols=241 Identities=14% Similarity=0.112 Sum_probs=157.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+.|||+|||+|+||.+|+..|.+++. ++++++|++++. +.....++.++++++|+||+|+| ++++++++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence 45899999999999999999999872 499999987542 33445678888889999999998 56899999
Q ss_pred cCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC---C
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG---S 196 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg---~ 196 (355)
.++.+.+. ++.+|.++++++.+..+. .++.. .. .++ ..| +.+.....+. +.+... +
T Consensus 75 ~~i~~~l~-----~~~iIS~~aGi~~~~l~~---~~~~~----~~----vvr--~mP--n~p~~~g~g~-t~i~~~~~~~ 133 (260)
T PTZ00431 75 LEIKPYLG-----SKLLISICGGLNLKTLEE---MVGVE----AK----IVR--VMP--NTPSLVGQGS-LVFCANNNVD 133 (260)
T ss_pred HHHHhhcc-----CCEEEEEeCCccHHHHHH---HcCCC----Ce----EEE--ECC--CchhHhccee-EEEEeCCCCC
Confidence 87665442 335777777777655443 33210 00 011 122 1223333343 444432 5
Q ss_pred HHHHHHHHHHHHHcCCCeEEeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcC
Q 018506 197 EDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSS 266 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~~~~~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~ 266 (355)
++..+.++.+|+.+|..++ +.+ .|+++++ +..+.|++.- +.+.|++.++..+++.+..
T Consensus 134 ~~~~~~v~~l~~~~G~~~~-v~E~~~d~~ta~~gsgPA~-----------~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~ 201 (260)
T PTZ00431 134 STDKKKVIDIFSACGIIQE-IKEKDMDIATAISGCGPAY-----------VFLFIESLIDAGVKNGLNRDVSKNLVLQTI 201 (260)
T ss_pred HHHHHHHHHHHHhCCcEEE-EChHHcchhhhhcCCHHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6778999999999997543 322 3444444 3445566665 9999999999999988765
Q ss_pred CCcc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 267 ARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 267 ~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
..+. +.......|..+ .+...+||.+.. ..++..++.|+.--+.+++.+..+++.+.|
T Consensus 202 ~G~a~ll~~~~~~~~~l----~~~v~spgG~T~-------~gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 202 LGSVHMVKASDQPVQQL----KDDVCSPGGITI-------VGLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred HHHHHHHHhcCCCHHHH----HHhCCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 3221 111111112221 133445554332 578888899999999999999998887654
No 69
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.68 E-value=4.1e-15 Score=136.16 Aligned_cols=245 Identities=12% Similarity=0.066 Sum_probs=153.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC----CcEEEEeCCh-hHHHHHHhC--CCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G----~~V~v~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
|+||+|||+|+||.+++..|.++| ++|.+|+|++ ++.+.+... +...+.+..++++++|+||+|+| ++.+++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHH
Confidence 578999999999999999999998 7899999864 445555442 23445778888899999999999 468888
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--C
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 195 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g 195 (355)
++..+.+.+. ++++||....+... ..+.+.++.. ... ..+++.| .....|...+..+ -
T Consensus 80 vl~~l~~~l~-----~~~~ivS~~aGi~~--~~l~~~~~~~----~vv----R~MPN~~-----~~~g~g~t~~~~~~~~ 139 (277)
T PRK06928 80 LLKDCAPVLT-----PDRHVVSIAAGVSL--DDLLEITPGL----QVS----RLIPSLT-----SAVGVGTSLVAHAETV 139 (277)
T ss_pred HHHHHHhhcC-----CCCEEEEECCCCCH--HHHHHHcCCC----CEE----EEeCccH-----HHHhhhcEEEecCCCC
Confidence 8877654442 34567777665433 3555554310 000 1233333 3334454333333 2
Q ss_pred CHHHHHHHHHHHHHcCCCeE--------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CCCHHHHHHHHHhc
Q 018506 196 SEDAYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSL-GISASTLTKILNSS 265 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~--------~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~-Gi~~~~~~~~~~~~ 265 (355)
+++..+.++.+|+.+|..++ .+.-.|+++++ +..+.|++.- +.+. |+++++..+++.++
T Consensus 140 ~~~~~~~v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~-----------~~~~~~al~~a~~~~ggl~~~~a~~l~~~~ 208 (277)
T PRK06928 140 NEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGF-----------IAAIFEEFAEAAVRNSSLSDEEAFQFLNFA 208 (277)
T ss_pred CHHHHHHHHHHHHhCCCEEEEchhhCceeeeeecCHHHH-----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56788999999999997543 22234777777 4456677776 7888 79999999988876
Q ss_pred CCCcc-cccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q 018506 266 SARCW-SSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 333 (355)
Q Consensus 266 ~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~ 333 (355)
...+. ........|..+ .++..+||.+.. ..++..++ |++--+.+++.+..++..+
T Consensus 209 ~~G~a~l~~~~~~~p~~l----~~~v~spgGtT~-------~gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 209 LAGTGKLLVEEDYTFSGT----IERVATKGGITA-------EGAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHHHHHHHHccCCCHHHH----HHhCCCCChHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43221 110111112222 123445554332 34555554 6666666666666666554
No 70
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.68 E-value=3.9e-15 Score=141.26 Aligned_cols=196 Identities=14% Similarity=0.185 Sum_probs=139.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC----CCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~----~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
++|+|||+|.||.+|+..|.++|++|.+|+++++..+.....+.. ..+++.++++++|+||+|+|.. .+.+++..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHHH
Confidence 479999999999999999999999999999988776554443332 2356778889999999999974 78888876
Q ss_pred CCcc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCCh--------HHHhcCceEE
Q 018506 122 PNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLTF 191 (355)
Q Consensus 122 ~~~~-l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~--------~~~~~g~~~~ 191 (355)
+.+. ++ ++.+|+|.++++....+.+.+.+.. ...|+. +|+.|+. .....+...+
T Consensus 80 l~~~~l~-----~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~i 143 (359)
T PRK06545 80 LADLELK-----PGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPWV 143 (359)
T ss_pred HhhcCCC-----CCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcEE
Confidence 5432 22 4579999999988776666554221 145666 6887753 2234565566
Q ss_pred Eec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 018506 192 MVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 265 (355)
Q Consensus 192 ~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~ 265 (355)
++. .+++.++.++++++.+|..++++++......+.++......+ ++++ +...+.+.+....+...+
T Consensus 144 l~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~i-----a~al--~~~~~~~~~~~~~la~~g 213 (359)
T PRK06545 144 LTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHIL-----ASSL--AARLAGEHPLALRLAAGG 213 (359)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHH-----HHHH--HHhhccCchHHHhhhccc
Confidence 664 478899999999999999888888766666665555543322 3333 555566666666665543
No 71
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.67 E-value=3.8e-16 Score=133.99 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=100.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------------------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~aDiV 105 (355)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+++. +..++++..+++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 899999999999999999999999999999999999988763 234567888888999999
Q ss_pred EEeCCCch---------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 106 ITMLPSSS---------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 106 i~~v~~~~---------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
|+|||+|. .+++++..+.+.+. ++++||..||..|.+++++...+-+. ..+...++++..+|
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lvV~~STvppGtt~~~~~~ile~----~~~~~~~f~la~~P 151 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLR-----PGDLVVIESTVPPGTTEELLKPILEK----RSGKKEDFHLAYSP 151 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHC-----SCEEEEESSSSSTTHHHHHHHHHHHH----HCCTTTCEEEEE--
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHh-----hcceEEEccEEEEeeehHhhhhhhhh----hcccccCCeEEECC
Confidence 99998773 45566665544543 46899999999999999665544321 12111347788888
Q ss_pred CC---CChHHHhcCceEEEecCCHHHH-HHHHHH
Q 018506 177 VS---GGVLAAEAGTLTFMVGGSEDAY-QAAKPL 206 (355)
Q Consensus 177 v~---g~~~~~~~g~~~~~~gg~~~~~-~~v~~l 206 (355)
.+ |...........++.|.+++.. +.+++|
T Consensus 152 Erl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 152 ERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp ----TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 76 6665556666677777655443 365543
No 72
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.66 E-value=6.9e-15 Score=136.88 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=125.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCC--CCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+..+||+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|. ....++.++++++|+||+|+|.. ...++
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v 82 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV 82 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH
Confidence 455799999999999999999999995 89999999998888877664 34567778889999999999975 55666
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChH--------HHhcCce
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTL 189 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~--------~~~~g~~ 189 (355)
+..+.+.++ ++.+|+|+++......+.+.+.++. +.+|+. .|+.|+.. ....|..
T Consensus 83 ~~~l~~~l~-----~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~ 146 (307)
T PRK07502 83 AAEIAPHLK-----PGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRW 146 (307)
T ss_pred HHHHHhhCC-----CCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCe
Confidence 655433332 4568899988887666555444321 245565 48876431 1223444
Q ss_pred EEEe---cCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 190 TFMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 190 ~~~~---gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
.+++ +++++.++.++++++.+|.+++++++......+-++...
T Consensus 147 ~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l 192 (307)
T PRK07502 147 CILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHL 192 (307)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence 4444 467889999999999999999888876566555444444
No 73
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.66 E-value=3.1e-15 Score=136.31 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=166.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-----------hCC-------------CCCCCCHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVA 99 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~ 99 (355)
..+||+|||+|.||+.||..++..|++|+++|++++.++... +.| +..+++.. ++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 458999999999999999999998899999999977644322 111 33344444 67
Q ss_pred hcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCC
Q 018506 100 EASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 177 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~iv-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv 177 (355)
++||+||.+++.+..++. ++..+..+.+ ++.++ .|+|+.++.. +.+...+ .-++.+.||.++|.
T Consensus 81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~-----~~aIlASNTSsl~it~---ia~~~~r------per~iG~HFfNP~~ 146 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVFAELEALAK-----PDAILASNTSSLSITE---LAEALKR------PERFIGLHFFNPVP 146 (307)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhcC-----CCcEEeeccCCCCHHH---HHHHhCC------chhEEEEeccCCCC
Confidence 899999999999988885 4444454443 23333 2444444443 4343321 11223589999887
Q ss_pred CCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018506 178 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS 256 (355)
Q Consensus 178 ~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~ 256 (355)
.........|..+ ++++++.+.++...+++.++...+ +|. +.|.+. ...+.|++.+..+...+++
T Consensus 147 ~m~LVEvI~g~~T-----~~e~~~~~~~~~~~igK~~vv~~D~pGF------i~NRil---~~~~~eA~~l~~eGva~~e 212 (307)
T COG1250 147 LMPLVEVIRGEKT-----SDETVERVVEFAKKIGKTPVVVKDVPGF------IVNRLL---AALLNEAIRLLEEGVATPE 212 (307)
T ss_pred cceeEEEecCCCC-----CHHHHHHHHHHHHHcCCCCEeecCCCce------ehHhHH---HHHHHHHHHHHHhCCCCHH
Confidence 6665555556656 899999999999999987655555 432 345543 4456899999999889999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHH
Q 018506 257 TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG-----VDCPLTSQAQDIYAKL 331 (355)
Q Consensus 257 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g-----v~~pi~~~~~~~~~~~ 331 (355)
++..++..+.+.. + .|. . -.|+ .+++.+.+-+....+ ..+ .+.++++...+.-..+
T Consensus 213 ~ID~~~~~~~G~p-m----Gpf--~------l~D~---~GlD~~~~i~~~~~~---~~~~~~~~~~~~~~~~~v~~g~lG 273 (307)
T COG1250 213 EIDAAMRQGLGLP-M----GPF--E------LADL---IGLDVMLHIMKVLNE---TLGDDPYYRPPPLLRKLVEAGRLG 273 (307)
T ss_pred HHHHHHHhccCCC-c----cHH--H------HHHH---HhHHHHHHHHHHHHH---hcCCCccccccHHHHHHHhccccc
Confidence 9999998765432 1 010 0 0011 113333332233332 333 3457778888877888
Q ss_pred HHCCCCCCcHHH
Q 018506 332 CENGHDSKDFSC 343 (355)
Q Consensus 332 ~~~g~g~~d~~~ 343 (355)
.+.|.|..||..
T Consensus 274 ~Ksg~GfY~y~~ 285 (307)
T COG1250 274 RKSGKGFYDYRG 285 (307)
T ss_pred ccCCCcceeccc
Confidence 888999999975
No 74
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.65 E-value=2.2e-14 Score=129.55 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=113.3
Q ss_pred ceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChhHH-----HHHHhCCCCCCCCHHHHhh
Q 018506 46 ESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAE 100 (355)
Q Consensus 46 mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~~~-----~~l~~~g~~~~~s~~e~~~ 100 (355)
|||.|.|+|+- |.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 78889998873 8899999999999999999987655 4578889999999999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHH-HhhchhhhccCCCCCceEEeCCCCC
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
++|+||+|+|++.++++++.+ ++.. .++|++|||+||++|.....+.+. +.-.. +..| ...|.-+.+-|
T Consensus 81 ~ADVVIL~LPd~aaV~eVl~G---Laa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r--~d~~---v~s~HP~~vP~ 150 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIART---IIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKR--TDVG---ISSMHPAAVPG 150 (341)
T ss_pred CCCEEEEecCCHHHHHHHHHH---HHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCc--cccC---eeccCCCCCCC
Confidence 999999999999999998743 4443 236789999999999987776554 22100 1111 01122222222
Q ss_pred ChHHHhcCceEEEec--------CCHHHHHHHHHHHHHcCCCeEEe
Q 018506 180 GVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYC 217 (355)
Q Consensus 180 ~~~~~~~g~~~~~~g--------g~~~~~~~v~~ll~~~g~~~~~~ 217 (355)
.+.+ ...++.| .++|..+++-++.+..++..+.+
T Consensus 151 ~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 151 TPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred CCCC----ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2211 1112221 37889999999999999887744
No 75
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.63 E-value=3.2e-15 Score=127.55 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=113.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHHh-CCC-CCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSD-MGV-PTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~~-~g~-~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
||+|+|+|.|++|+++|++|+++||+|++-+| .+++.+...+ .+. ....++.++++.+|+||++||- ..+.+++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHHHH
Confidence 68999999999999999999999999998865 4555555444 232 2345888999999999999996 477787776
Q ss_pred CCccccCCCCCCCeEEEEcCCCC---------------HHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhc
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID---------------PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 186 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~---------------~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~ 186 (355)
+...+ .+++|||+++.- -..++.+.+.++...+... ++-+.+...........
T Consensus 80 l~~~~------~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~~ 147 (211)
T COG2085 80 LRDAL------GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPGG 147 (211)
T ss_pred HHHHh------CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcCC
Confidence 54433 568999998851 1123444555543221111 22222222211111112
Q ss_pred CceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHH
Q 018506 187 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 226 (355)
Q Consensus 187 g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~ 226 (355)
....+++|.|.++.+.+.++.+.+|...+..|++..+..+
T Consensus 148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~l 187 (211)
T COG2085 148 RRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARIL 187 (211)
T ss_pred ceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccc
Confidence 3335666778889999999999999999999986555444
No 76
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1.2e-14 Score=130.85 Aligned_cols=197 Identities=16% Similarity=0.216 Sum_probs=129.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---c-EEEEeC-ChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---K-MAVHDV-NCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~-V~v~dr-~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
..+||+|||+|+||.+++..|.++|+ + +++++| ++++.+.+.+ .++..+.+..++++++|+||+++|. +..++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 45789999999999999999998873 3 777887 5778887766 4666677888999999999999996 47788
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--C
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 195 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g 195 (355)
++..+.+.+ ++++||+++.+... ..+.+.++. + .......|.+ +.....+...+..+ .
T Consensus 82 v~~~l~~~~------~~~~vis~~~gi~~--~~l~~~~~~-------~---~~v~r~~Pn~--a~~v~~g~~~~~~~~~~ 141 (245)
T PRK07634 82 LLAELSPLL------SNQLVVTVAAGIGP--SYLEERLPK-------G---TPVAWIMPNT--AAEIGKSISLYTMGQSV 141 (245)
T ss_pred HHHHHHhhc------cCCEEEEECCCCCH--HHHHHHcCC-------C---CeEEEECCcH--HHHHhcCCeEEeeCCCC
Confidence 887654433 23577777666543 245555431 0 0122345632 23344454343333 5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCCc--chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcC
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGISASTLTKILNSSS 266 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~~--g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gi~~~~~~~~~~~~~ 266 (355)
+++..+.++++|+.+|..++ +.+. -...+.--... .++..+.|++. .+.+.|+++++..+++....
T Consensus 142 ~~~~~~~v~~lf~~~G~~~~-~~e~~~~~~~a~~gs~p----a~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 142 NETHKETLQLILKGIGTSQL-CTEEEVHQLTAVTGSAP----AFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhhcchH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 78889999999999998664 4331 11111100000 11233445444 38999999999988887643
No 77
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=3.4e-15 Score=138.62 Aligned_cols=249 Identities=12% Similarity=0.096 Sum_probs=155.2
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhH-------HHH-----------HHhCC-------------CCCCCC--HHHHhhcC
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNV-------MKM-----------FSDMG-------------VPTKET--PFEVAEAS 102 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~g-------------~~~~~s--~~e~~~~a 102 (355)
||..||..++.+|++|++||++++. ++. +.+.| +..+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 11112 233333 66888999
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChH
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 182 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~ 182 (355)
|+||.|+|++.+++..++.. +.+. ..+++++ +||+++....++.+.+.. ..+..+.||+++|......
T Consensus 81 D~ViEav~E~~~~K~~~f~~--l~~~--~~~~~il--aSntS~~~~~~la~~~~~------p~r~~g~Hf~~Pp~~~~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRW--LGRH--VDADAII--ASTTSTFLVTDLQRHVAH------PERFLNAHWLNPAYLMPLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHHHH--HHhh--CCCCcEE--EEccccCCHHHHHhhcCC------cccEEEEecCCccccCceE
Confidence 99999999999999876653 2222 1244455 566665566677776532 1122348999998432222
Q ss_pred HHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018506 183 AAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 262 (355)
Q Consensus 183 ~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~ 262 (355)
....+. +.++++++.++++++.+|+.++++++.+ +. +.|. .....++|++.++++.+++++++.+++
T Consensus 149 EVv~g~-----~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf----i~nr---i~~~~l~EAl~l~e~g~~~~e~iD~a~ 215 (314)
T PRK08269 149 EVSPSD-----ATDPAVVDRLAALLERIGKVPVVCGPSP-GY----IVPR---IQALAMNEAARMVEEGVASAEDIDKAI 215 (314)
T ss_pred EEeCCC-----CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc----chHH---HHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 211122 3489999999999999999999999853 32 2233 455668999999999999999999999
Q ss_pred HhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHCCCCCCcH
Q 018506 263 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE-VGVDCPLTSQAQDIYAKLCENGHDSKDF 341 (355)
Q Consensus 263 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~gv~~pi~~~~~~~~~~~~~~g~g~~d~ 341 (355)
..+.+..+. ...|. .+....+++....-+..+.+...+ .--+.|+++...+--..+.+.|.|..||
T Consensus 216 ~~g~G~~~~--~~Gpf-----------~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y 282 (314)
T PRK08269 216 RTGFGLRFA--VLGLL-----------EFIDWGGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282 (314)
T ss_pred HhCCCCCcc--CcCHH-----------HHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeC
Confidence 876543211 00110 000011222222222222221111 1123466666666666677888899888
Q ss_pred H
Q 018506 342 S 342 (355)
Q Consensus 342 ~ 342 (355)
.
T Consensus 283 ~ 283 (314)
T PRK08269 283 A 283 (314)
T ss_pred C
Confidence 4
No 78
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.62 E-value=5.5e-15 Score=130.75 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=112.5
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--------CCC---CCCCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||+||| +|+||++++..|+++||+|++|+|++++++.+.+. +.. ...+..++++++|+||+|+|. +
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 7899997 89999999999999999999999999988776542 221 124667888999999999996 4
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH---------------HHHHHHHHhh-chhhhccCCCCCceEEeCC-
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT---------------SRNISAAVSN-CILKEKKDSWENPVMLDAP- 176 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~---------------~~~l~~~~~~-~~~~~~~g~~~~~~~~~~p- 176 (355)
.+.+++..+.+.+ ++++||++++..+.. .+.+.+.++. ..+. ..|.+.|
T Consensus 80 ~~~~~l~~l~~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VV--------ka~~~~~a 145 (219)
T TIGR01915 80 HVLKTLESLRDEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVV--------AAFHNLSA 145 (219)
T ss_pred HHHHHHHHHHHhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEe--------eccccCCH
Confidence 7788776543333 346899998775431 1334444431 1000 1122222
Q ss_pred -CCCChHHHhcCceEEEecCCHHHHHHHHHHHHHc-CCCeEEeCCcchHHHH
Q 018506 177 -VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAA 226 (355)
Q Consensus 177 -v~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~-g~~~~~~g~~g~a~~~ 226 (355)
+..+. ....+...+++|.|+++.+.+..|.+.+ |..+++.|++..+...
T Consensus 146 ~~~~~~-~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~ 196 (219)
T TIGR01915 146 VLLQDV-DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIV 196 (219)
T ss_pred HHhcCC-CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHH
Confidence 12221 1122344567777788999999999999 9999999987555444
No 79
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.60 E-value=1.3e-14 Score=148.27 Aligned_cols=254 Identities=18% Similarity=0.096 Sum_probs=156.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFE 97 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e 97 (355)
....||+|||+|.||..||..++ .+|++|++||++++.++... +. .+..+++. +
T Consensus 302 ~~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 380 (699)
T TIGR02440 302 AKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-R 380 (699)
T ss_pred ccccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-H
Confidence 45578999999999999999998 58999999999988654321 11 23345555 4
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-++|+..+++. ++.++..++. ++.++. ++|+.++. ++.+.+.. ..++-+.||.++
T Consensus 381 ~~~~adlViEav~E~l~~K~~v~~~l~~~~~-----~~~ilasnTS~l~i~---~la~~~~~------p~r~~g~HffnP 446 (699)
T TIGR02440 381 GFKDVDIVIEAVFEDLALKHQMVKDIEQECA-----AHTIFASNTSSLPIG---QIAAAASR------PENVIGLHYFSP 446 (699)
T ss_pred HhccCCEEEEeccccHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHH---HHHHhcCC------cccEEEEecCCc
Confidence 67899999999999988875 4544444442 334443 33333333 34444421 222334788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|..........+..+ ++++++.+..+++.+|+.++.+.+. .| .+.|.+.. ..+.|++.+.+ .|+++
T Consensus 447 ~~~~~lVEvv~g~~T-----~~~~~~~~~~~~~~~gk~pv~v~d~-pG----fi~nRl~~---~~~~Ea~~l~~-~G~~~ 512 (699)
T TIGR02440 447 VEKMPLVEVIPHAGT-----SEQTIATTVALAKKQGKTPIVVADK-AG----FYVNRILA---PYMNEAARLLL-EGEPV 512 (699)
T ss_pred cccCceEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEEccc-cc----hHHHHHHH---HHHHHHHHHHH-CCCCH
Confidence 765554444444444 8999999999999999999988762 22 24455443 45689988876 56899
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 256 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
+++..++. +.+. . ..|. .+....+++...+-...+.+...+.-.+.++++...+.-+.+.+.|
T Consensus 513 ~dID~a~~-~~G~--p---~GPf-----------~l~D~vGld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~G~lG~ksg 575 (699)
T TIGR02440 513 EHIDKALV-KFGF--P---VGPI-----------TLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNG 575 (699)
T ss_pred HHHHHHHH-HcCC--C---cCHH-----------HHHHHhchHHHHHHHHHHHHhcCCCCCCcHHHHHHHHCCCCcccCC
Confidence 99988884 3221 0 0110 0001122333333223222222221233455665555555666777
Q ss_pred CCCCcHH
Q 018506 336 HDSKDFS 342 (355)
Q Consensus 336 ~g~~d~~ 342 (355)
.|..||.
T Consensus 576 ~GfY~y~ 582 (699)
T TIGR02440 576 KGFYLYG 582 (699)
T ss_pred cEEEeCC
Confidence 7877775
No 80
>PLN02256 arogenate dehydrogenase
Probab=99.60 E-value=1e-13 Score=128.01 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=121.6
Q ss_pred CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 40 VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 40 ~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
..++..|+|+|||+|.||..++..|.+.|++|++|++++.. +...+.|+....+..+++ .++|+||+|+|. ..+.++
T Consensus 31 ~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~v 108 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAV 108 (304)
T ss_pred hccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHH
Confidence 33457789999999999999999999999999999998643 434456776677888876 479999999996 477888
Q ss_pred hcCC-CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEeCCCCCChHH--HhcCceEEEec
Q 018506 119 YNGP-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVLA--AEAGTLTFMVG 194 (355)
Q Consensus 119 l~~~-~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~~--~~~g~~~~~~g 194 (355)
+..+ .+.+ .++++|+|.++++....+.+.+.++. +. .+-.+|++|.... ...+...++..
T Consensus 109 l~~l~~~~l-----~~~~iviDv~SvK~~~~~~~~~~l~~-----------~~~~V~~HPmaG~e~~~~~~~~~~~~~~~ 172 (304)
T PLN02256 109 LRSLPLQRL-----KRSTLFVDVLSVKEFPKNLLLQVLPE-----------EFDILCTHPMFGPESGKGGWAGLPFVYDK 172 (304)
T ss_pred HHhhhhhcc-----CCCCEEEecCCchHHHHHHHHHhCCC-----------CCeEEecCCCCCCCCCccccCCCeEEEec
Confidence 8765 2223 24579999999876666666665431 12 2334677665432 23344333332
Q ss_pred -------CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH
Q 018506 195 -------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 227 (355)
Q Consensus 195 -------g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K 227 (355)
.+++..+.++++++.+|.+++.+.+......+-
T Consensus 173 ~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA 212 (304)
T PLN02256 173 VRIGDEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAA 212 (304)
T ss_pred ceecCCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHH
Confidence 267889999999999999999888755555553
No 81
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.60 E-value=9.1e-14 Score=123.65 Aligned_cols=255 Identities=14% Similarity=0.161 Sum_probs=185.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC-------------------CCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~aD 103 (355)
|+||+.||+|.+|.+....++..- .+|+++|.+..++.+.+.. +..+.++.+.+++.+|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 579999999999999988887653 3688999999887766542 3445788999999999
Q ss_pred EEEEeCCCch--------------HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 018506 104 VVITMLPSSS--------------HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 169 (355)
Q Consensus 104 iVi~~v~~~~--------------~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 169 (355)
+||+.|.+|. ..++...-+.... ...+|++.-||++...++.+...+... ..|. .
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s-----~~~kivvekstvpv~aaesi~~il~~n----~~~i--~ 149 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVS-----VSDKIVVEKSTVPVKAAESIEKILNHN----SKGI--K 149 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhc-----cCCeEEEeeccccchHHHHHHHHHhcC----CCCc--e
Confidence 9999997763 2222222211121 245799999999999999998887531 1221 2
Q ss_pred ceEEeCCCC---CChHHHhcCceEEEecCC--H---HHHHHHHHHHHHcCCC-eEEeCCcchHHHHHHHHHHHHHHHHHH
Q 018506 170 PVMLDAPVS---GGVLAAEAGTLTFMVGGS--E---DAYQAAKPLFLSMGKN-TIYCGGAGNGAAAKICNNLTMAVSMLG 240 (355)
Q Consensus 170 ~~~~~~pv~---g~~~~~~~g~~~~~~gg~--~---~~~~~v~~ll~~~g~~-~~~~g~~g~a~~~Kl~~n~~~~~~~~~ 240 (355)
+.+++.|.+ |.......+.-.+++||+ + .+.+.+..+++++-.+ -+.+-..-+++..||+.|.+.+--+..
T Consensus 150 fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqriss 229 (481)
T KOG2666|consen 150 FQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISS 229 (481)
T ss_pred eEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhh
Confidence 567888876 555555556667888874 3 3566777788887543 344555679999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCC--C
Q 018506 241 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 318 (355)
Q Consensus 241 ~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~--~ 318 (355)
++-+.++|++.|.|..++..++... +.... .++ +-+-||+..+..||+-.++..++-+|+| .
T Consensus 230 ins~salceatgadv~eva~avg~d---~rig~------kfl-------~asvgfggscfqkdilnlvyice~lnlpeva 293 (481)
T KOG2666|consen 230 INSMSALCEATGADVSEVAYAVGTD---SRIGS------KFL-------NASVGFGGSCFQKDILNLVYICECLNLPEVA 293 (481)
T ss_pred hHHHHHHHHhcCCCHHHHHHHhccc---ccccH------HHh-------hcccCcCchhHHHHHHHHHHHHhcCCChHHH
Confidence 9999999999999999998887642 11111 111 2345899999999999999999999988 2
Q ss_pred hHHHHHHH
Q 018506 319 PLTSQAQD 326 (355)
Q Consensus 319 pi~~~~~~ 326 (355)
...+.+.+
T Consensus 294 ~ywqqvi~ 301 (481)
T KOG2666|consen 294 EYWQQVIK 301 (481)
T ss_pred HHHHHHhh
Confidence 34444443
No 82
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.57 E-value=3e-14 Score=146.02 Aligned_cols=195 Identities=16% Similarity=0.183 Sum_probs=133.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFEV 98 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~ 98 (355)
....||+|||+|.||..||..++.+||+|++||++++.++... +. .+..+++. +.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 389 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AG 389 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HH
Confidence 3457899999999999999999999999999999998764321 11 13344555 45
Q ss_pred hhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC
Q 018506 99 AEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 176 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 176 (355)
+++||+||-++|....++. ++.++..++. ++.++. |+|+.++. .+.+.+.. ..++.+.||.++|
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~------p~r~~g~Hff~P~ 455 (715)
T PRK11730 390 FERVDVVVEAVVENPKVKAAVLAEVEQKVR-----EDTILASNTSTISIS---LLAKALKR------PENFCGMHFFNPV 455 (715)
T ss_pred hcCCCEEEecccCcHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------CccEEEEecCCcc
Confidence 6899999999999888875 4444444442 334443 33333333 34444421 2223347888876
Q ss_pred CCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 177 VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 177 v~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
..........+.-+ ++++++.+..++..+|+.++.+.+ +| .+.|.+... .++|++.+.++ |.++
T Consensus 456 ~~~~lVEvv~g~~T-----~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~---~~~ea~~lv~~-Ga~~ 520 (715)
T PRK11730 456 HRMPLVEVIRGEKT-----SDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFP---YFAGFSQLLRD-GADF 520 (715)
T ss_pred cccceEEeeCCCCC-----CHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHH---HHHHHHHHHHc-CCCH
Confidence 54444433344434 899999999999999999998876 33 244665443 46899988775 4999
Q ss_pred HHHHHHHHhcCC
Q 018506 256 STLTKILNSSSA 267 (355)
Q Consensus 256 ~~~~~~~~~~~~ 267 (355)
+++..++..+.+
T Consensus 521 e~ID~a~~~~~G 532 (715)
T PRK11730 521 RQIDKVMEKQFG 532 (715)
T ss_pred HHHHHHHHhhCC
Confidence 999998876543
No 83
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=1.8e-13 Score=138.70 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=116.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.+.|||||||+|.||..+|+.|.+.|++|++|||+... +...+.|+....+.++++. .+|+||+|+|. ..+.+++..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~ 444 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS 444 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH
Confidence 35689999999999999999999999999999998653 4455567766778888775 58999999995 578887776
Q ss_pred CCc-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChHHH--hcCceE----EEe
Q 018506 122 PNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAA--EAGTLT----FMV 193 (355)
Q Consensus 122 ~~~-~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~~~--~~g~~~----~~~ 193 (355)
+.. .+ .++++|+|+++++....+.+.+.++. +..|+ .+|++|..... ...... .++
T Consensus 445 l~~~~l-----k~g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v 508 (667)
T PLN02712 445 LPFQRL-----KRSTLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESGKNGWNNLAFVFDKVRI 508 (667)
T ss_pred HHHhcC-----CCCcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCccccccchhhhhhhccCcEe
Confidence 532 12 25679999999985555555554431 14456 78888766431 111111 233
Q ss_pred cCCHH---HHHHHHHHHHHcCCCeEEeCCcchHHHH
Q 018506 194 GGSED---AYQAAKPLFLSMGKNTIYCGGAGNGAAA 226 (355)
Q Consensus 194 gg~~~---~~~~v~~ll~~~g~~~~~~g~~g~a~~~ 226 (355)
+++.+ ..+.+.++++.+|.+++.+.+......+
T Consensus 509 ~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 509 GSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 44443 4455669999999999888875555443
No 84
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.57 E-value=3.5e-14 Score=145.47 Aligned_cols=253 Identities=16% Similarity=0.085 Sum_probs=156.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHH-----------hC-------------CCCCCCCHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFS-----------DM-------------GVPTKETPFE 97 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e 97 (355)
....||+|||+|.||..||..++ .+|++|++||++++.++... +. .+..+++. +
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 385 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-R 385 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-H
Confidence 45678999999999999999999 88999999999988654421 11 13344555 5
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEE-cCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLID-SSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~-~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-+++++..++. ++..++..++ ++.++.. +|+.++. .+.+.+.. ..++-+.||.++
T Consensus 386 ~~~~aDlViEav~E~~~~K~~v~~~le~~~~-----~~~ilasnTS~l~i~---~la~~~~~------p~r~ig~Hff~P 451 (708)
T PRK11154 386 GFKHADVVIEAVFEDLALKQQMVAEVEQNCA-----PHTIFASNTSSLPIG---QIAAAAAR------PEQVIGLHYFSP 451 (708)
T ss_pred HhccCCEEeecccccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHHhcCc------ccceEEEecCCc
Confidence 67899999999999888875 4444444442 3444433 3333333 34444321 222334788877
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
|..........+.-+ ++++++.+..++..+|+.++.+.+ +| .+.|.+. ...++|++.+.++ |++
T Consensus 452 ~~~~~lVEvv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~---~~~~~EA~~lv~e-Gv~ 516 (708)
T PRK11154 452 VEKMPLVEVIPHAKT-----SAETIATTVALAKKQGKTPIVVRDGAG------FYVNRIL---APYINEAARLLLE-GEP 516 (708)
T ss_pred cccCceEEEECCCCC-----CHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHH---HHHHHHHHHHHHc-CCC
Confidence 755444444344434 899999999999999999888866 32 2346544 3446899988776 789
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHC
Q 018506 255 ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN 334 (355)
Q Consensus 255 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~ 334 (355)
++++..++. +.+. . ..|. .+....+++...+-+....+...+.--+.++++...+--+.+.+.
T Consensus 517 ~~dID~a~~-~~G~--p---~GPf-----------~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~~l~~~v~~g~~G~k~ 579 (708)
T PRK11154 517 IEHIDAALV-KFGF--P---VGPI-----------TLLDEVGIDVGTKIIPILEAALGERFSAPAAFDKLLNDDRKGRKN 579 (708)
T ss_pred HHHHHHHHH-HcCC--C---CCHH-----------HHHHHhhhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCCcccC
Confidence 999888875 3221 0 0110 000112233333333333332222122345555555555556777
Q ss_pred CCCCCcHH
Q 018506 335 GHDSKDFS 342 (355)
Q Consensus 335 g~g~~d~~ 342 (355)
|.|..||.
T Consensus 580 g~GfY~y~ 587 (708)
T PRK11154 580 GRGFYLYG 587 (708)
T ss_pred CceEEECC
Confidence 88888875
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.56 E-value=4.9e-14 Score=144.53 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=133.0
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e 97 (355)
+....+|+|||+|.||..||..++.+|++|++||++++.++...+ . .++.+++.+
T Consensus 332 ~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 410 (737)
T TIGR02441 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS- 410 (737)
T ss_pred CCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 356678999999999999999999999999999999987654221 1 234455554
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||-+++++..++. ++.+++.+++ ++.++. |+|+.++. .+.+.+.+ ..++-+.||.++
T Consensus 411 ~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~------p~r~ig~Hff~P 476 (737)
T TIGR02441 411 GFKNADMVIEAVFEDLSLKHKVIKEVEAVVP-----PHCIIASNTSALPIK---DIAAVSSR------PEKVIGMHYFSP 476 (737)
T ss_pred HhccCCeehhhccccHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC------ccceEEEeccCC
Confidence 56899999999999988885 4444444443 334443 34444443 34444432 122234788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~ 254 (355)
|..........+..+ ++++++.+..++..+|+.++.+.+ .| .+.|.+.. ..+.|++.+.++ |++
T Consensus 477 ~~~m~LvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~ 541 (737)
T TIGR02441 477 VDKMQLLEIITHDGT-----SKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVD 541 (737)
T ss_pred cccCceEEEeCCCCC-----CHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCC
Confidence 654444443344434 899999999999999999998877 33 23466443 456899988754 789
Q ss_pred HHHHHHHHH
Q 018506 255 ASTLTKILN 263 (355)
Q Consensus 255 ~~~~~~~~~ 263 (355)
++++..++.
T Consensus 542 ~~~ID~a~~ 550 (737)
T TIGR02441 542 PKKLDKLTT 550 (737)
T ss_pred HHHHHHHHH
Confidence 999998863
No 86
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.55 E-value=1.2e-13 Score=141.22 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=136.1
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFE 97 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e 97 (355)
+....||+|||+|.||..||..++.+|++|+++|++++.++...+ . .++.+++. +
T Consensus 310 ~~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 388 (714)
T TIGR02437 310 AKDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-A 388 (714)
T ss_pred ccccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence 346678999999999999999999999999999999987654221 1 23344555 4
Q ss_pred HhhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 98 VAEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 98 ~~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+++||+||.+++.+..++. ++.++..+++ ++.++. |+|+.++. .+.+.+.. ..++-+.||.++
T Consensus 389 ~~~~aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasnTS~l~i~---~ia~~~~~------p~r~ig~Hff~P 454 (714)
T TIGR02437 389 GFDNVDIVVEAVVENPKVKAAVLAEVEQHVR-----EDAILASNTSTISIS---LLAKALKR------PENFCGMHFFNP 454 (714)
T ss_pred HhcCCCEEEEcCcccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHhhcCC------cccEEEEecCCC
Confidence 56899999999999988875 4545444443 334443 23333333 34444421 222334788887
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|..........+..+ ++++++.+..++..+|+.++.+.+. .+ .+.|.+.. ..+.|++.+.+ .|.++
T Consensus 455 ~~~~~lvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl~~---~~~~ea~~l~~-eG~~~ 520 (714)
T TIGR02437 455 VHRMPLVEVIRGEKS-----SDETIATVVAYASKMGKTPIVVNDC-PG----FFVNRVLF---PYFGGFSKLLR-DGADF 520 (714)
T ss_pred cccCceEeecCCCCC-----CHHHHHHHHHHHHHcCCEEEEeCCc-cc----chHHHHHH---HHHHHHHHHHH-CCCCH
Confidence 755544444444445 8999999999999999999988762 22 34566544 34689999876 56999
Q ss_pred HHHHHHHHhcCC
Q 018506 256 STLTKILNSSSA 267 (355)
Q Consensus 256 ~~~~~~~~~~~~ 267 (355)
+++..++..+.+
T Consensus 521 ~~ID~a~~~~~G 532 (714)
T TIGR02437 521 VRIDKVMEKQFG 532 (714)
T ss_pred HHHHHHHHhcCC
Confidence 999999876543
No 87
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.54 E-value=5.4e-13 Score=121.14 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=126.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhCCCCCC--CCH-HHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~--~s~-~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.+|+|+|+|+|.||..+++.|.++|+.|.+++++.. ..+...+.|+... .+. .+.+..+|+||++||-. .+..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHH
Confidence 468999999999999999999999999877765544 4444444555332 233 56777899999999964 88888
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCC--hHHHhcCceEEEecC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGG--VLAAEAGTLTFMVGG 195 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~--~~~~~~g~~~~~~gg 195 (355)
+..+.+.+ .++.+|+|.++++....+.+.+..++ ..+|+ -+|++|+ ......+...+++-.
T Consensus 81 l~~l~~~l-----~~g~iv~Dv~S~K~~v~~a~~~~~~~-----------~~~~vg~HPM~G~~~~~~lf~~~~~vltp~ 144 (279)
T COG0287 81 LKELAPHL-----KKGAIVTDVGSVKSSVVEAMEKYLPG-----------DVRFVGGHPMFGPEADAGLFENAVVVLTPS 144 (279)
T ss_pred HHHhcccC-----CCCCEEEecccccHHHHHHHHHhccC-----------CCeeEecCCCCCCcccccccCCCEEEEcCC
Confidence 88766544 36789999999998887777776542 01344 4788888 455556776666643
Q ss_pred ---CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 196 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 196 ---~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
+.+.++.+.++++.+|.+++++.+--....+-.++-+
T Consensus 145 ~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshL 184 (279)
T COG0287 145 EGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHL 184 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHH
Confidence 4678999999999999999998886676666544444
No 88
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.52 E-value=1.9e-14 Score=120.58 Aligned_cols=136 Identities=19% Similarity=0.262 Sum_probs=95.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC--------------CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+||+++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 799999999999999999999999999999999998887632 33567899999999999999997
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC-HHHH----HHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTS----RNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG 187 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~-~~~~----~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g 187 (355)
+..+++++.+.+.+. ++++++.++.+. +.+. +.+.+.++.. .+.++.+|.+.........
T Consensus 80 ~~~~~~~~~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~----------~~~~lsGP~~A~Ei~~~~p 144 (157)
T PF01210_consen 80 QAHREVLEQLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEILPIP----------RIAVLSGPSFAEEIAEGKP 144 (157)
T ss_dssp GGHHHHHHHHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHHSSC----------GEEEEESS--HHHHHTT--
T ss_pred HHHHHHHHHHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHhhhc----------ceEEeeCccHHHHHHcCCC
Confidence 488999998877774 456888887765 3332 3333333321 1678889987665555555
Q ss_pred ceEEEecCCHH
Q 018506 188 TLTFMVGGSED 198 (355)
Q Consensus 188 ~~~~~~gg~~~ 198 (355)
+..++.+.+.+
T Consensus 145 t~~~~as~~~~ 155 (157)
T PF01210_consen 145 TAVVIASKNEE 155 (157)
T ss_dssp EEEEEEESSHH
T ss_pred eEEEEEecccc
Confidence 55556566654
No 89
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.50 E-value=6.3e-14 Score=107.40 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=72.7
Q ss_pred eEEEEcccHHhHHHHHHHHHCC---CcEEEE-eCChhHHHHHHh-CCCCCCC-CHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 47 SVGFIGLGNMGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSD-MGVPTKE-TPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G---~~V~v~-dr~~~~~~~l~~-~g~~~~~-s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||||+|+||.+|++.|.++| ++|.++ +|++++.+++.+ .+..... +..|+++++|+||+|+|. +++.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 7999999999999999999999 999955 999999999866 4555555 899999999999999985 68889887
Q ss_pred CCCccccCCCCCCCeEEEEcCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st 142 (355)
.+ ... .+++++|+++.
T Consensus 80 ~i-~~~-----~~~~~vis~~a 95 (96)
T PF03807_consen 80 EI-PHL-----LKGKLVISIAA 95 (96)
T ss_dssp HH-HHH-----HTTSEEEEEST
T ss_pred HH-hhc-----cCCCEEEEeCC
Confidence 75 222 25679998865
No 90
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.49 E-value=7.1e-13 Score=122.46 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=155.1
Q ss_pred HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--------------CCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 55 NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 55 ~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.||+.+|..|+++||+|++|+|+ ++.+.+++.|.. ..+++++ ....|+||+|++.. ++++++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~ 77 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAA 77 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHH
Confidence 37999999999999999999997 777777765421 1223444 56899999999986 7888888
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCC--ChHHHhcCceEEEecC---
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTFMVGG--- 195 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g--~~~~~~~g~~~~~~gg--- 195 (355)
.+.+.+. ++.+|+...++.. ..+.+.+.++...+. . +..+..+-..+ .......+. +.+|.
T Consensus 78 ~l~~~l~-----~~~~iv~~qNG~g-~~~~l~~~~~~~~v~--~----g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~ 143 (293)
T TIGR00745 78 LLLPLIG-----KNTKVLFLQNGLG-HEERLRELLPARRIL--G----GVVTHGAVREEPGVVHHAGLGA--TKIGDYVG 143 (293)
T ss_pred HhHhhcC-----CCCEEEEccCCCC-CHHHHHHHhCccCEE--E----EEEEEeeEEcCCcEEEEecccc--EEEecCCC
Confidence 7766653 3356666666542 234555555421110 0 11111111111 111111222 33332
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC
Q 018506 196 SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLGIS 254 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~la~~~Gi~ 254 (355)
..+..+.+.++|+..+..+....++-...|.|++.|...+ ....++.|+..++++.|++
T Consensus 144 ~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 144 ENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVD 223 (293)
T ss_pred chHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCC
Confidence 1245677888888888877888888899999999886433 2455688999999999975
Q ss_pred --HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 255 --ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 255 --~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.+.+.+.+........ ....++..++..|++.+-++..| ++++.++++|+++|.++.++++++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 224 LPDDEVEELVRAVIRMTA-ENTSSMLQDLLRGRRTEIDAING-----------AVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred CCHHHHHHHHHHHHhcCC-CCCChHHHHHHcCCcchHHHhcc-----------HHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 4434444433211100 00012223344455544444433 799999999999999999999887654
No 91
>PLN02712 arogenate dehydrogenase
Probab=99.47 E-value=3.1e-12 Score=129.73 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=119.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
.++|+|+|||+|.||..++..|.+.|++|++|||+... +...+.|+....++.+++ .++|+||+|+|. ..+.+++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 45689999999999999999999999999999998544 445556777777888865 569999999995 588888876
Q ss_pred CC-ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc-eEEeCCCCCChH--HHhcCceEEEec---
Q 018506 122 PN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP-VMLDAPVSGGVL--AAEAGTLTFMVG--- 194 (355)
Q Consensus 122 ~~-~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~~~~pv~g~~~--~~~~g~~~~~~g--- 194 (355)
+. +.+ .++++|+|++++.....+.+.+.++. +. .+..+|++|... ....+...++.+
T Consensus 128 l~~~~l-----~~g~iVvDv~SvK~~~~~~l~~~l~~-----------~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~ 191 (667)
T PLN02712 128 LPLQRL-----KRNTLFVDVLSVKEFAKNLLLDYLPE-----------DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRI 191 (667)
T ss_pred hhhhcC-----CCCeEEEECCCCcHHHHHHHHHhcCC-----------CCeEEeeCCcCCCccccchhccCcEEEeeccC
Confidence 53 222 25679999999887655555555432 13 344578887752 223333344442
Q ss_pred C-CH---HHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHH
Q 018506 195 G-SE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 230 (355)
Q Consensus 195 g-~~---~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~ 230 (355)
+ +. +.++.++++++.+|.+++.+.+......+-.+.
T Consensus 192 ~~~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 192 GNEELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred CCccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 2 22 345677799999999998887655555554443
No 92
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.47 E-value=6.4e-14 Score=119.87 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=94.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-----------C-------------CCCCCCCHHHHhhcC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEAS 102 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~a 102 (355)
||+|||+|.||..||..++.+|++|++||++++.++...+ . .+..+++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999987544221 1 244567888887 99
Q ss_pred CEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh
Q 018506 103 DVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV 181 (355)
Q Consensus 103 DiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~ 181 (355)
|+||-++|....++. ++..++.++. ++.++...|+..+. ..+.+.+.. ..++-+.||.++|.....
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~-----~~~ilasnTSsl~i--~~la~~~~~------p~R~ig~Hf~~P~~~~~l 146 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICP-----PDTILASNTSSLSI--SELAAALSR------PERFIGMHFFNPPHLMPL 146 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS------TTSEEEE--SSS-H--HHHHTTSST------GGGEEEEEE-SSTTT--E
T ss_pred heehhhccccHHHHHHHHHHHHHHhC-----CCceEEecCCCCCH--HHHHhccCc------CceEEEEecccccccCce
Confidence 999999999887775 4444444432 44454433333322 334443321 111234788876643333
Q ss_pred HHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC
Q 018506 182 LAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 219 (355)
Q Consensus 182 ~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~ 219 (355)
.....+.-+ +++.++.+..+++.+|+.++.+.+
T Consensus 147 VEvv~~~~T-----~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 147 VEVVPGPKT-----SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEE-TTS------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred EEEeCCCCC-----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 222222222 889999999999999998877643
No 93
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.47 E-value=3e-12 Score=132.86 Aligned_cols=185 Identities=17% Similarity=0.229 Sum_probs=131.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..||+|||+|.||.++++.|.++| ++|++|||++++.+...+.|+. ...+..++++++|+||+|+|. +.+++++.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHHH
Confidence 368999999999999999999998 4799999999998887777764 455677888999999999996 57888887
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChH--------HHhcCceEEE
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL--------AAEAGTLTFM 192 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~--------~~~~g~~~~~ 192 (355)
.+.+.++ ++.+|+|+++++....+.+.+.+.. .. ...+.++|+.|+.. ....+...++
T Consensus 82 ~l~~~~~-----~~~ii~d~~svk~~~~~~l~~~~~~-----~~----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~ 147 (735)
T PRK14806 82 DLKPLLS-----EHAIVTDVGSTKGNVVDAARAVFGE-----LP----AGFVPGHPIAGSEKSGVHAANADLFRNHKVIL 147 (735)
T ss_pred HHHHhcC-----CCcEEEEcCCCchHHHHHHHHhccc-----cC----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEE
Confidence 6655442 4579999999987777777666532 01 12467889876543 1223443444
Q ss_pred ec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 193 VG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEAL 245 (355)
Q Consensus 193 ~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~ 245 (355)
+. ++++..+.++++++.+|.+++++.+......+-++..... .+...+.|++
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~l 202 (735)
T PRK14806 148 TPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQL 202 (735)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHHH
Confidence 43 4778899999999999988888876444444433433332 2233345553
No 94
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.44 E-value=4e-12 Score=117.61 Aligned_cols=192 Identities=16% Similarity=0.117 Sum_probs=121.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-HHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh-cC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY-NG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl-~~ 121 (355)
+.++|||||+|+||.++|.+|.+.|++|.+++++.++... ..+.|+... ++.++++.+|+|++++|+. ....++ ..
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~~ 93 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEEE 93 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHHH
Confidence 4578999999999999999999999999998887554433 344566554 8999999999999999976 447777 43
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCce-EEeCCCC-CC----hHHHhcCceEEE-ec
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPV-MLDAPVS-GG----VLAAEAGTLTFM-VG 194 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~pv~-g~----~~~~~~g~~~~~-~g 194 (355)
+.+.++ ++++++.+........+ ...+. +.. +.-+|-. +. .-....|...++ +.
T Consensus 94 I~~~Lk-----~g~iL~~a~G~~i~~~~---~~p~~-----------~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~ 154 (330)
T PRK05479 94 IEPNLK-----EGAALAFAHGFNIHFGQ---IVPPA-----------DVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVH 154 (330)
T ss_pred HHhcCC-----CCCEEEECCCCChhhce---eccCC-----------CCcEEEeCCCCCchhhhhhhhcCCCceEEEEec
Confidence 333332 45677656554443321 11110 111 1222332 11 111345655555 45
Q ss_pred CC--HHHHHHHHHHHHHcCCCeE-----EeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018506 195 GS--EDAYQAAKPLFLSMGKNTI-----YCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 258 (355)
Q Consensus 195 g~--~~~~~~v~~ll~~~g~~~~-----~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~ 258 (355)
.| .++.+.+..++..+|.... .+.+ .-+. .+-- ..++.+....++..+.......|++|+..
T Consensus 155 ~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~d-l~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 155 QDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETD-LFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeeeeeccccccc-chhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 54 8899999999999997643 1111 1011 1111 23344555667778888899999988774
No 95
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.39 E-value=1.4e-12 Score=111.13 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=162.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----------------------------CCCCCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----------------------------GVPTKET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----------------------------g~~~~~s 94 (355)
.+..|+|||+|.||+.||+.-+.+|++|+++|++++.+.+..+. .+..+++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 34569999999999999999999999999999998876543321 1344678
Q ss_pred HHHHhhcCCEEEEeCCCchHHHHHhc-CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE
Q 018506 95 PFEVAEASDVVITMLPSSSHVLDVYN-GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML 173 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~~~~~~~vl~-~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~ 173 (355)
..+++.++|+||.++-.+..++.-++ .++...+ +. .++-+.|.+. ....+.....+ ..++.|.||.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak-----~~-~il~tNTSSl-~lt~ia~~~~~------~srf~GlHFf 156 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAK-----SS-TILATNTSSL-SLTDIASATQR------PSRFAGLHFF 156 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcc-----cc-eEEeecccce-eHHHHHhhccC------hhhhceeecc
Confidence 88889999999999877777775444 3343332 22 3332322222 22334433322 2223358888
Q ss_pred eC-CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 018506 174 DA-PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 251 (355)
Q Consensus 174 ~~-pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~ 251 (355)
++ |++.-.. ..++..+ +++.+..+.++-+.+|+.++.+-+ +|. +.|.+. +-.+.|++++-++-
T Consensus 157 NPvPvMKLvE-Vir~~~T-----S~eTf~~l~~f~k~~gKttVackDtpGF------IVNRlL---iPyl~ea~r~yerG 221 (298)
T KOG2304|consen 157 NPVPVMKLVE-VIRTDDT-----SDETFNALVDFGKAVGKTTVACKDTPGF------IVNRLL---IPYLMEAIRMYERG 221 (298)
T ss_pred CCchhHHHhh-hhcCCCC-----CHHHHHHHHHHHHHhCCCceeecCCCch------hhhHHH---HHHHHHHHHHHHhc
Confidence 86 4544333 3333335 889999999999999999888877 442 335533 34467999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHH--HHHHhCCCChHHHHHHHHHH
Q 018506 252 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALA--SAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 252 Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~--~a~~~gv~~pi~~~~~~~~~ 329 (355)
..+.+++...+..|.+.. +.|-.+ .||- +++...--++-..+ -....-.|.|++...++--+
T Consensus 222 dAskeDIDtaMklGagyP-------MGPfEL------~Dyv---GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegk 285 (298)
T KOG2304|consen 222 DASKEDIDTAMKLGAGYP-------MGPFEL------ADYV---GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGK 285 (298)
T ss_pred CCcHhhHHHHHhccCCCC-------CChHHH------HHHh---hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccc
Confidence 999999999998775421 111001 1231 22222211111111 12334457899988888888
Q ss_pred HHHHCCCCCCcH
Q 018506 330 KLCENGHDSKDF 341 (355)
Q Consensus 330 ~~~~~g~g~~d~ 341 (355)
.+.+.|.|..+|
T Consensus 286 lGrKtg~GfY~Y 297 (298)
T KOG2304|consen 286 LGRKTGEGFYKY 297 (298)
T ss_pred cccccCccceec
Confidence 888888887665
No 96
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.38 E-value=5.8e-13 Score=106.45 Aligned_cols=102 Identities=18% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...+||+|||+|++|..|++.|.++||+|. +|+|+++..+.+.+ .+.....++.|+++.+|++|++|||+ .+..+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~ 86 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAE 86 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHH
Confidence 356899999999999999999999999986 45898888777765 34445567888899999999999987 8888877
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTS 148 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~ 148 (355)
++...- ...++++|++||...+...
T Consensus 87 ~La~~~---~~~~g~iVvHtSGa~~~~v 111 (127)
T PF10727_consen 87 QLAQYG---AWRPGQIVVHTSGALGSDV 111 (127)
T ss_dssp HHHCC-----S-TT-EEEES-SS--GGG
T ss_pred HHHHhc---cCCCCcEEEECCCCChHHh
Confidence 653321 1236789999999877643
No 97
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.37 E-value=1.9e-11 Score=113.18 Aligned_cols=188 Identities=19% Similarity=0.160 Sum_probs=116.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC-ChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV-NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr-~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.+||+|||+|+||.+++.+|.++|++|+++++ ++++.+.+.+.|+... ++.++++++|+|++++|+..+...++.++.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~ 81 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQ 81 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHH
Confidence 47899999999999999999999999877654 4455666666777654 688889999999999997535555554443
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCCh-H----HHhcCceEEE-ec--C
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV-L----AAEAGTLTFM-VG--G 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~-~----~~~~g~~~~~-~g--g 195 (355)
+.++ ++. +|..+.+..- ..+...++. .. -.+.-+|-.-+. . ....|...++ +. .
T Consensus 82 ~~l~-----~g~-iVs~aaG~~i--~~~~~~~~~-----~~-----~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~ 143 (314)
T TIGR00465 82 PLLK-----EGK-TLGFSHGFNI--HFVQIVPPK-----DV-----DVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDP 143 (314)
T ss_pred hhCC-----CCc-EEEEeCCccH--hhccccCCC-----CC-----cEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCC
Confidence 3332 344 4444444432 223333321 00 112223322111 1 1145554443 33 2
Q ss_pred CHHHHHHHHHHHHHcCCC-------eE--E-----eCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 196 SEDAYQAAKPLFLSMGKN-------TI--Y-----CGG----AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~-------~~--~-----~g~----~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
+.+..+.+..+++.+|.. .+ . ++. .|+++++ +..+.|++ .+.|++++.
T Consensus 144 ~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~-----------v~~~~eal---v~~G~~~e~ 209 (314)
T TIGR00465 144 TGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTAL-----------IKAGFDTL---VEAGYQPEL 209 (314)
T ss_pred CHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHH-----------HHHHHHHH---HHcCCCHHH
Confidence 567889999999999986 31 1 111 2333333 23344666 799999999
Q ss_pred HHHHHHhc
Q 018506 258 LTKILNSS 265 (355)
Q Consensus 258 ~~~~~~~~ 265 (355)
.+..+.+.
T Consensus 210 A~~~~~~~ 217 (314)
T TIGR00465 210 AYFETVHE 217 (314)
T ss_pred HHHHHHHH
Confidence 88777654
No 98
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.36 E-value=3.2e-11 Score=113.71 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=115.9
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++||+|||+ |.||..+|+.|.+. |++|++||++. ....++.+.+.++|+||+|+|- ..+.+++.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d-----------~~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l 71 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD-----------PGSLDPATLLQRADVLIFSAPI-RHTAALIEEY 71 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc-----------cccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHH
Confidence 589999999 99999999999974 88999999851 1234677888999999999996 4777888776
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEE-eCCCCCChH-HHhcCceEEEecC-CHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL-AAEAGTLTFMVGG-SEDA 199 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~pv~g~~~-~~~~g~~~~~~gg-~~~~ 199 (355)
.+.... ..++++|+|.++++....+.+.+. . ..|+ .+|++|+.. ....+...+++.. ..+.
T Consensus 72 ~~~~~~--l~~~~iVtDVgSvK~~i~~~~~~~---------~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~ 135 (370)
T PRK08818 72 VALAGG--RAAGQLWLDVTSIKQAPVAAMLAS---------Q-----AEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHW 135 (370)
T ss_pred hhhhcC--CCCCeEEEECCCCcHHHHHHHHhc---------C-----CCEEeeCCCCCCCCCcccCCCeEEEeCCCchhH
Confidence 554211 125789999999986655544211 1 2244 478887743 3456776666654 4455
Q ss_pred HHHHHHHHHHcCCCeEEeCCcchHHHHHHHHH
Q 018506 200 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 231 (355)
Q Consensus 200 ~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n 231 (355)
.+.++++++.+|.+++.+.+......+-.++-
T Consensus 136 ~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~ 167 (370)
T PRK08818 136 SPWVQSLCSALQAECVYATPEHHDRVMALVQA 167 (370)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 78899999999999999888777777765543
No 99
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.31 E-value=5.5e-11 Score=106.95 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=141.1
Q ss_pred CCcEEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 68 GYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 68 G~~V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++|++|+|++++.+.+.+ .|+..++++.++++++|+||+||+ |+++++++..+...+. ++++||+++.+.+.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~l~~~~~-----~~~~ivS~~agi~~ 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSELKSEKG-----KDKLLISIAAGVTL 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHHHhhhcc-----CCCEEEEecCCCCH
Confidence 3789999999999988866 477778889999999999999999 7899999877654332 34688888777654
Q ss_pred HHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEecC--CHHHHHHHHHHHHHcCCCeEEeCC-----
Q 018506 147 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG----- 219 (355)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~gg--~~~~~~~v~~ll~~~g~~~~~~g~----- 219 (355)
..+.+.++.. . ..+--.|. .+.....|...+..+. +++..+.++.+|+.+|..++ +.+
T Consensus 83 --~~l~~~~~~~----~------~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~-v~E~~~~~ 147 (245)
T TIGR00112 83 --EKLSQLLGGT----R------RVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVE-LPEALMDA 147 (245)
T ss_pred --HHHHHHcCCC----C------eEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcch
Confidence 4565655310 0 11112332 2333344553433332 56778999999999997543 332
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcc-cccCCCCCCCcccCCCCCCCCCC
Q 018506 220 ----AGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARCW-SSDSYNPVPGVMEGVPASRNYGG 293 (355)
Q Consensus 220 ----~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
.|+++++ +..+.|++.- +.+.|+++++..+++.++..++. ........++.+ .++...|
T Consensus 148 ~talsgsgPA~-----------~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l----~~~v~sp 212 (245)
T TIGR00112 148 VTALSGSGPAY-----------VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALL----KDQVTSP 212 (245)
T ss_pred HHhhccCcHHH-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHcCCCC
Confidence 2333333 3335555554 89999999999999887653211 111011111111 1223345
Q ss_pred CcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 294 GFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 294 ~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
|.+. ...++..++.|+.--+.+++.+.++++.
T Consensus 213 gGtT-------~~gl~~Le~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 213 GGTT-------IAGLAVLEEKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred cHHH-------HHHHHHHHHCChHHHHHHHHHHHHHHhc
Confidence 4332 3577888888988888888888877654
No 100
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.25 E-value=6.2e-10 Score=97.20 Aligned_cols=248 Identities=20% Similarity=0.271 Sum_probs=168.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC----cEEEEeCChhHH-HHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~----~V~v~dr~~~~~-~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
|+|||||.|+|..++++.+...|. .++.+-.+.... ..+...|+..+.+..+..+.+|+++++++ |+.+..++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHhh
Confidence 789999999999999999999984 466665532223 33667788877777899999999999997 579999988
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEEEec--CCHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSED 198 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~~~g--g~~~ 198 (355)
+....+. ++++++.+.-+..- ..+++.+... .+. ...+++.| .....+...+-.+ ...+
T Consensus 80 ~~~~~~~-----~~~iivS~aaG~tl--~~l~~~l~~~---~rv----iRvmpNtp-----~~v~eg~sv~~~g~~~~~~ 140 (267)
T KOG3124|consen 80 EIKPKVS-----KGKIIVSVAAGKTL--SSLESKLSPP---TRV----IRVMPNTP-----SVVGEGASVYAIGCHATNE 140 (267)
T ss_pred cCccccc-----cceEEEEEeecccH--HHHHHhcCCC---Cce----EEecCCCh-----hhhhcCcEEEeeCCCcchh
Confidence 7765432 45688877665533 3455555310 000 01234444 2333444222222 2456
Q ss_pred HHHHHHHHHHHcCCCeE--------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCc
Q 018506 199 AYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTL-GQSLGISASTLTKILNSSSARC 269 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~--------~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l-a~~~Gi~~~~~~~~~~~~~~~s 269 (355)
..+.++++++..|.... ++|-.|+++++ . ..+.|+++. +.++|++++..+++..++-...
T Consensus 141 D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgPAy---------~--f~~ieaLadGgVkmGlPr~lA~~laaqtllGA 209 (267)
T KOG3124|consen 141 DLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGPAY---------V--FVAIEALADGGVKMGLPRQLAYRLAAQTLLGA 209 (267)
T ss_pred hHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcHHH---------H--HHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 77999999999997543 45556888877 3 346788888 9999999999999988765321
Q ss_pred -ccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCC
Q 018506 270 -WSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 335 (355)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g 335 (355)
-+.......|..++ +...+||.+.- +.+...++-|++.-++.++.+.-.++.+.|
T Consensus 210 akMVl~s~qHP~~Lk----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 210 AKMVLASGQHPAQLK----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHHHhccCCcHHHh----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 22112223455554 34456754332 678889999999999999998888877654
No 101
>PRK07574 formate dehydrogenase; Provisional
Probab=99.20 E-value=3e-10 Score=107.81 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=91.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|+||..+|++|...|.+|.+|||++...+...+.++....+++++++.||+|++++|...+++.++..
T Consensus 190 L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~- 268 (385)
T PRK07574 190 LEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA- 268 (385)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH-
Confidence 4558999999999999999999999999999999864434334456665678999999999999999999999988753
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.++ ++.++||++.+..-..+.+.+.+.+
T Consensus 269 -~~l~~mk--~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 269 -DVLSRMK--RGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred -HHHhcCC--CCcEEEECCCCchhhHHHHHHHHHh
Confidence 3555543 6789999999998888888888865
No 102
>PLN03139 formate dehydrogenase; Provisional
Probab=99.17 E-value=5.8e-10 Score=105.81 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=93.5
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|+||..+|+.|...|.+|.+|||++...+...+.|+...+++++++++||+|++++|...+++.++..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 275 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK 275 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH
Confidence 34568999999999999999999999999999999864444444556666679999999999999999999999998853
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 158 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~ 158 (355)
+.++.+ .++.++||++.+..-..+.+.+.+.+.
T Consensus 276 --~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 276 --ERIAKM--KKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred --HHHhhC--CCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 356553 377899999999988888888888653
No 103
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.16 E-value=2.5e-09 Score=96.55 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=136.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
.+|||||.|+||.-+|..|.++||.|...+|+. .-...+..|....+.+.+++ +.+|+|++|+.. ..++.++.....
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 579999999999999999999999999999964 43333446666777777766 579999999965 578888765533
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCChHHH--hcCceEEEe---cCC--
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVLAA--EAGTLTFMV---GGS-- 196 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~~~~~--~~g~~~~~~---gg~-- 196 (355)
.- ...++++++..+....+...+.+++++. +.++. .|++|+.... .+|-..++. .|+
T Consensus 131 qr----lrrgtlfvdvlSvKefek~lfekYLPkd-----------fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~ 195 (480)
T KOG2380|consen 131 QR----LRRGTLFVDVLSVKEFEKELFEKYLPKD-----------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAA 195 (480)
T ss_pred hh----hccceeEeeeeecchhHHHHHHHhCccc-----------cceEeecCCcCCCcCCCccccCceEEEEeeccccc
Confidence 20 1256899999999877777888888752 55555 5666654222 233233333 233
Q ss_pred --HHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHhcCCCcc
Q 018506 197 --EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS---ASTLTKILNSSSARCW 270 (355)
Q Consensus 197 --~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~---~~~~~~~~~~~~~~s~ 270 (355)
++.++.+.++|...|.+.+++.-.... |+.....+-.+.+...-.+..++..-++ .+.+.++......++|
T Consensus 196 ~r~ercE~fleIf~cegckmVemS~eeHD---kiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsf 271 (480)
T KOG2380|consen 196 SRPERCEFFLEIFACEGCKMVEMSYEEHD---KIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSF 271 (480)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEeeccc---ccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchh
Confidence 789999999999999988876531111 2222222224444444444455554443 5666777666555555
No 104
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.15 E-value=2.1e-10 Score=105.91 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=92.0
Q ss_pred cccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-CCCCHHHHhhcCCEEEEeCC
Q 018506 32 MRRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 32 ~~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-~~~s~~e~~~~aDiVi~~v~ 110 (355)
+..|.+.+......++|||||+|+||..+|+.|...|++|.+|||+... .+.. ...++++++++||+|++++|
T Consensus 109 ~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 109 NGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred cCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCC
Confidence 3467765555566789999999999999999988889999999997432 2332 24689999999999999999
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
...+++.++. .+.++.+ .++.++||++.+.+...+.+.+.+.+
T Consensus 183 ~t~~T~~li~--~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 183 LTDETRGMIN--SKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCchhhcCcC--HHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 9888888764 2355543 36789999999998888888888864
No 105
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.12 E-value=1.6e-09 Score=98.23 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=109.5
Q ss_pred HHHHHHHCC--CcEEEEeCChhHHHHHHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeE
Q 018506 60 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQL 136 (355)
Q Consensus 60 ia~~L~~~G--~~V~v~dr~~~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~i 136 (355)
||+.|.++| ++|++||++++..+...+.|+... .+..+++.++|+||+|+|- ..+.+++..+.+.+. ++.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~~~~~~~~-----~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLEEIAPYLK-----PGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHHHHHCGS------TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHHHhhhhcC-----CCcE
Confidence 688999999 689999999999888877776543 2336788999999999996 578888887666543 5689
Q ss_pred EEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe-CCCCCC--------hHHHhcCceEEEecC---CHHHHHHHH
Q 018506 137 LIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGG--------VLAAEAGTLTFMVGG---SEDAYQAAK 204 (355)
Q Consensus 137 vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~pv~g~--------~~~~~~g~~~~~~gg---~~~~~~~v~ 204 (355)
|+|.++++....+.+.+.++. +..|+. +|++|. ......|...+++-. +++.++.++
T Consensus 75 v~Dv~SvK~~~~~~~~~~~~~-----------~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~ 143 (258)
T PF02153_consen 75 VTDVGSVKAPIVEAMERLLPE-----------GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVE 143 (258)
T ss_dssp EEE--S-CHHHHHHHHHHHTS-----------SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHhcCc-----------ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHH
Confidence 999999998887777776641 134444 677766 233446777777733 467899999
Q ss_pred HHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH
Q 018506 205 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 236 (355)
Q Consensus 205 ~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~ 236 (355)
++++.+|.+++.+..--....+-++..+....
T Consensus 144 ~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH~~ 175 (258)
T PF02153_consen 144 ELWEALGARVVEMDAEEHDRIMAYVSHLPHLL 175 (258)
T ss_dssp HHHHHCT-EEEE--HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHCCCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 99999999988887766666666665554433
No 106
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.11 E-value=2.3e-10 Score=97.89 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=89.8
Q ss_pred cccc---cCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 32 MRRF---FSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 32 ~~~~---~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
...| .........-++|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++|+++.||+|+++
T Consensus 20 ~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~ 98 (178)
T PF02826_consen 20 NGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLH 98 (178)
T ss_dssp TTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-
T ss_pred cCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhh
Confidence 3466 344444556789999999999999999999999999999999887664555555 445999999999999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+|...+.+.++.. ..++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 99 ~plt~~T~~li~~--~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 99 LPLTPETRGLINA--EFLAKM--KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SSSSTTTTTSBSH--HHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hccccccceeeee--eeeecc--ccceEEEeccchhhhhhhHHHHHHhh
Confidence 9977666655443 244443 36789999999887776778888764
No 107
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.10 E-value=7.6e-10 Score=103.60 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=86.3
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...-++|||||+|.||..+|+.|...|++|.+|||+++..... .....+++++++++|+|++++|...+.+.++..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~ 218 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK 218 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH
Confidence 3456799999999999999999999999999999987654322 234568999999999999999998777776642
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..++.. .++.++||++.+..-....+.+.+.+
T Consensus 219 --~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 219 --AMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred --HHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 355443 36789999999987777778887764
No 108
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.09 E-value=6e-10 Score=104.54 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=87.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|...+++.++..
T Consensus 148 L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~- 224 (333)
T PRK13243 148 VYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE- 224 (333)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH-
Confidence 3558999999999999999999999999999999865432 2233443 358999999999999999998888887753
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 225 -~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 225 -ERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred -HHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 355543 36789999999998888888888864
No 109
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.08 E-value=4.9e-10 Score=103.98 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=91.9
Q ss_pred ccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 33 RRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 33 ~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..|.+.+......++|||||+|.||..+|+.|...|++|.+||++++....... .....++++++++||+|++++|..
T Consensus 124 ~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 124 SHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred CCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCC
Confidence 467765554556689999999999999999999999999999987654321111 112357899999999999999999
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.+++.++.. +.++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 202 ~~T~~li~~--~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 202 PETVGIINQ--QLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HHHHHHhHH--HHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 998888753 355543 36789999999987777778887764
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.03 E-value=7.7e-10 Score=92.28 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhC-CC----CCCCCHHHHhhcCCEEEEeCCCchH-HH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSH-VL 116 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~aDiVi~~v~~~~~-~~ 116 (355)
..++|+|||+|.||..++..|.+.| ++|++|||++++.+.+.+. +. ....+..++++++|+||+|+|.... ++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~ 97 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGD 97 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCC
Confidence 4578999999999999999999996 7899999999988776553 32 2345677778899999999998643 22
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
.+..... . ..++++++|+++.++.+ .+.+...
T Consensus 98 ~~~~~~~-~-----~~~~~~v~D~~~~~~~~--~l~~~~~ 129 (155)
T cd01065 98 ELPLPPS-L-----LKPGGVVYDVVYNPLET--PLLKEAR 129 (155)
T ss_pred CCCCCHH-H-----cCCCCEEEEcCcCCCCC--HHHHHHH
Confidence 2221111 1 13567999999986654 5655554
No 111
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.02 E-value=1.1e-09 Score=100.11 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=112.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-.+|||||+|.||.++|++|.+.|++|++|+|.....+.....|... .+++|+++.||+|++++|++. .+.++..
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~-t~~V~~~-- 90 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ-QAHVYKA-- 90 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH-HHHHHHH--
Confidence 457899999999999999999999999999987654444455557654 489999999999999999864 4677642
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCC-CChHH----HhcCceEEEec---C
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS-GGVLA----AEAGTLTFMVG---G 195 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~-g~~~~----~~~g~~~~~~g---g 195 (355)
+++..++ ++++++ .+.+..-.-. ...+. ... ++.++ +|-. |+... ...|.+.+++= .
T Consensus 91 eil~~MK--~GaiL~-f~hgfni~~~---~i~pp----~~v----dv~mv-aPKgpG~~vR~~y~~G~Gvp~l~av~qd~ 155 (335)
T PRK13403 91 EVEENLR--EGQMLL-FSHGFNIHFG---QINPP----SYV----DVAMV-APKSPGHLVRRVFQEGNGVPALVAVHQDA 155 (335)
T ss_pred HHHhcCC--CCCEEE-ECCCcceecC---ceeCC----CCC----eEEEE-CCCCCChHHHHHHHcCCCceeEEEEEECC
Confidence 2444322 444444 3443322111 11110 000 12233 4432 33332 12344443331 2
Q ss_pred CHHHHHHHHHHHHHcCCC---eEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 196 SEDAYQAAKPLFLSMGKN---TIYCGGAGNGAAAKIC--NNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 196 ~~~~~~~v~~ll~~~g~~---~~~~g~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
+..+.+.+......+|.. ++.+ ....-.-..|. +..+......++.-++....++|.+|+.
T Consensus 156 sg~a~~~ala~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~ 221 (335)
T PRK13403 156 TGTALHVALAYAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEI 221 (335)
T ss_pred CCcHHHHHHHHHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 334677788888888854 2211 00000011111 1233445555566666778888888776
No 112
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.00 E-value=1.6e-09 Score=101.76 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-++|||||+|.||..+|+.|+ ..|.+|++||+++.... ...+...++++++++++|+|++++|.....+.++..
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence 45689999999999999999994 46889999998875431 123455668999999999999999988766654432
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.++.. .++.++||++.+.....+.+.+.+.+
T Consensus 221 --~~l~~m--k~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 221 --DLFKHF--KKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred --HHHhcC--CCCcEEEECCCCcccCHHHHHHHHHh
Confidence 234432 36789999999998888888888764
No 113
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.98 E-value=2.8e-09 Score=91.18 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=134.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHH-----------HHhCC--------------CCCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG--------------VPTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~-----------l~~~g--------------~~~~~s~~e~ 98 (355)
+..||+|+|.|.+|+..|..|+..||+|..||..++.+.. +.+.| +..++++.|+
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3578999999999999999999999999999998875432 11222 4567899999
Q ss_pred hhcCCEEEEeCCCchHHHH-HhcCCCccccCCCCCCCeEEEEcCCCC--HHHHHHHHHHHhhchhhhccCCCCCceEEeC
Q 018506 99 AEASDVVITMLPSSSHVLD-VYNGPNGLLQGGNSVRPQLLIDSSTID--PQTSRNISAAVSNCILKEKKDSWENPVMLDA 175 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~-vl~~~~~~l~~~~~~~~~ivi~~st~~--~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 175 (355)
.+.+=.|--|+|..-.++. ++..++.++. +.+|+..||.. |.. ..+....+. . +-..|-+++
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS~--~s~gL~~k~-----q--~lvaHPvNP 146 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIAD------PTTILASSTSTFMPSK--FSAGLINKE-----Q--CLVAHPVNP 146 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcC------CceEEeccccccChHH--Hhhhhhhhh-----h--eeEecCCCC
Confidence 9999999999998766664 4444444542 23555544433 332 122222110 0 011455666
Q ss_pred CCCCChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 018506 176 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 255 (355)
Q Consensus 176 pv~g~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~ 255 (355)
|.+-+.......+-+ +++.+++.++++..+|.+++.....-.|.+. |.+ ..+.++|--.++..-+++.
T Consensus 147 PyfiPLvElVPaPwT-----sp~tVdrt~~lM~sigq~pV~l~rei~Gf~l----nri---q~Ailne~wrLvasGil~v 214 (313)
T KOG2305|consen 147 PYFIPLVELVPAPWT-----SPDTVDRTRALMRSIGQEPVTLKREILGFAL----NRI---QYAILNETWRLVASGILNV 214 (313)
T ss_pred CcccchheeccCCCC-----ChhHHHHHHHHHHHhCCCCccccccccccee----ccc---cHHHHHHHHHHHHccCcch
Confidence 665544433333323 7789999999999999877655442222222 333 3455799999999999999
Q ss_pred HHHHHHHHhcCCCccc
Q 018506 256 STLTKILNSSSARCWS 271 (355)
Q Consensus 256 ~~~~~~~~~~~~~s~~ 271 (355)
.++..+++.|.+..+.
T Consensus 215 ~dvD~VmS~GLG~RYA 230 (313)
T KOG2305|consen 215 NDVDAVMSAGLGPRYA 230 (313)
T ss_pred hhHHHHHhcCCCcchh
Confidence 9999999988765443
No 114
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.98 E-value=1e-08 Score=92.92 Aligned_cols=279 Identities=13% Similarity=0.098 Sum_probs=160.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CC-----cEEEEeCChh------HHHHH-HhC--------------CCCCCCCHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GY-----KMAVHDVNCN------VMKMF-SDM--------------GVPTKETPF 96 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~-----~V~v~dr~~~------~~~~l-~~~--------------g~~~~~s~~ 96 (355)
..||+|||.|+||+++|+.+.++ .+ +|..|-+..+ ++.+. +.. ++.+++++.
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHH
Confidence 46899999999999999999864 12 5777754322 22222 211 345678999
Q ss_pred HHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH-----HHHHHHHHHhhchhhhccCCCCCce
Q 018506 97 EVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ-----TSRNISAAVSNCILKEKKDSWENPV 171 (355)
Q Consensus 97 e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~-----~~~~l~~~~~~~~~~~~~g~~~~~~ 171 (355)
+++.++|++|..+|. +.+.++++++.+.++. +...|.++.+... ..+-+.+.+.+ ..|. ...
T Consensus 101 ea~~dADilvf~vPh-Qf~~~ic~~l~g~vk~-----~~~aISL~KG~e~~~~g~~i~liS~iI~~-----~lgI--~~~ 167 (372)
T KOG2711|consen 101 EAAKDADILVFVVPH-QFIPRICEQLKGYVKP-----GATAISLIKGVEVGEEGPGIRLISQIIHR-----ALGI--PCS 167 (372)
T ss_pred HHhccCCEEEEeCCh-hhHHHHHHHHhcccCC-----CCeEEEeecceeccCCCCceeehHHHHHH-----HhCC--Cce
Confidence 999999999999995 7888999998888763 3455666554321 12223333332 1221 256
Q ss_pred EEeCCCCCChHHHhcCceEEEecCCHHHH-HHHHHHHHHcCCCeEEeCCc-----------------chHHHHHHHHHHH
Q 018506 172 MLDAPVSGGVLAAEAGTLTFMVGGSEDAY-QAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLT 233 (355)
Q Consensus 172 ~~~~pv~g~~~~~~~g~~~~~~gg~~~~~-~~v~~ll~~~g~~~~~~g~~-----------------g~a~~~Kl~~n~~ 233 (355)
++.+|-+........-.-+.+.+.++... ..+..+|+.-..+++.+.+. |....+.+.+|..
T Consensus 168 vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTk 247 (372)
T KOG2711|consen 168 VLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTK 247 (372)
T ss_pred eecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchH
Confidence 78777776665555444344444433333 34777887666555433321 3334445666777
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHH------HHHhcCC--CcccccCCCCCCCcccC-CC---CCCCCCCCcchhh
Q 018506 234 MAVSMLGVSEALTLGQSLGI--SASTLTK------ILNSSSA--RCWSSDSYNPVPGVMEG-VP---ASRNYGGGFASKL 299 (355)
Q Consensus 234 ~~~~~~~~~Ea~~la~~~Gi--~~~~~~~------~~~~~~~--~s~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~ 299 (355)
.+.+...+.|+..++...=- .++++++ ++.+..+ +.|..+.+ .++ +. .+.....|- .-.
T Consensus 248 aAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeaf------aktgk~~~~~E~ell~Gq-~~Q 320 (372)
T KOG2711|consen 248 AAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAF------AKTGKSLEELEKELLNGQ-KLQ 320 (372)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHH------HHcCCCHHHHHHHhhCCC-ccc
Confidence 77788888888888766432 2333322 2222111 01111100 000 00 000000000 111
Q ss_pred HHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHCCCCCCcHHHHHHHHhc
Q 018506 300 MAKDLNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 350 (355)
Q Consensus 300 ~~kd~~~~~~~a~~~gv--~~pi~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 350 (355)
.....+.+.+++++.|+ ..|++.+++++.. +++...++++.+.+
T Consensus 321 G~~Ta~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 321 GPATAKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred CcHHHHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 22334678889999999 7899999999885 55566777775543
No 115
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.94 E-value=7.6e-09 Score=94.29 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=76.7
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHHC--CCcEE-EEeCChhHHHHHHhC-CC-CCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~-v~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+|+.+||||||+|.||..++..|.+. ++++. +|||++++.+.+.+. +. ...++.++++.++|+|++|+|.. ...
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~ 81 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLR 81 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHH
Confidence 45678999999999999999999874 67765 889999998877653 43 56788999999999999999976 444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
++... .++ .++.++..+.......+++.+...
T Consensus 82 e~~~~---aL~-----aGk~Vi~~s~gal~~~~~L~~~A~ 113 (271)
T PRK13302 82 AIVEP---VLA-----AGKKAIVLSVGALLRNEDLIDLAR 113 (271)
T ss_pred HHHHH---HHH-----cCCcEEEecchhHHhHHHHHHHHH
Confidence 54432 343 233444455554445566666554
No 116
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.91 E-value=5.2e-09 Score=104.10 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=93.2
Q ss_pred cccccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+..|.+.. .....-++|||||+|.||..+|+.|...|++|.+||+.... +...+.++...+++++++++||+|++++
T Consensus 123 ~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 123 EGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHT 201 (525)
T ss_pred cCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEcc
Confidence 34676432 12345578999999999999999999999999999985322 2233456655678999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 158 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~ 158 (355)
|...+++.++.. +.++.+ .++.++||++.+..-....+.+.+.+.
T Consensus 202 Plt~~T~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 202 PLTPETRGLIGA--EELAKM--KKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred CCChhhccCcCH--HHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 998888887742 355543 367899999999987778888888653
No 117
>PLN02928 oxidoreductase family protein
Probab=98.91 E-value=7.7e-09 Score=97.51 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred ccccCCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH------------HhCCCCCCCCHHHHhh
Q 018506 33 RRFFSSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAE 100 (355)
Q Consensus 33 ~~~~~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l------------~~~g~~~~~s~~e~~~ 100 (355)
+.|.........-++|||||+|.||..+|+.|...|.+|++|||+..+.... ..... ...+++++++
T Consensus 147 ~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~ 225 (347)
T PLN02928 147 RRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAG 225 (347)
T ss_pred CCcccccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHh
Confidence 3465432233456899999999999999999999999999999974322111 11112 3458999999
Q ss_pred cCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 101 ASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 101 ~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.||+|++++|.....+.++.. +.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 226 ~aDiVvl~lPlt~~T~~li~~--~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 226 EADIVVLCCTLTKETAGIVND--EFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred hCCEEEECCCCChHhhcccCH--HHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 999999999988887776653 355543 36789999999887666778777764
No 118
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.89 E-value=7.8e-09 Score=96.14 Aligned_cols=124 Identities=20% Similarity=0.178 Sum_probs=94.3
Q ss_pred ccccccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEE
Q 018506 29 SSAMRRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi 106 (355)
++++..|.+... ....-+++||||+|.+|+.+|..+..-|.+|.+||+...+. .....+....++++++++.||+|+
T Consensus 124 ~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~ 202 (324)
T COG0111 124 SQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILT 202 (324)
T ss_pred HHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEE
Confidence 334457776222 22346899999999999999999999999999999943332 222245666789999999999999
Q ss_pred EeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 107 TMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 107 ~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.+|....++.++... .++.+ +++.++||++-+..-....+.+.+.+
T Consensus 203 lh~PlT~eT~g~i~~~--~~a~M--K~gailIN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 203 LHLPLTPETRGLINAE--ELAKM--KPGAILINAARGGVVDEDALLAALDS 249 (324)
T ss_pred EcCCCCcchhcccCHH--HHhhC--CCCeEEEECCCcceecHHHHHHHHHc
Confidence 9999988888877643 34433 36789999999987777788887764
No 119
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.88 E-value=6.6e-09 Score=103.38 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=92.5
Q ss_pred cccccCCCC--CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeC
Q 018506 32 MRRFFSSQV--PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 32 ~~~~~~~~~--~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
+..|.+... ....-++|||||+|.||..+|+.|...|++|.+|||+... +...+.++... +++++++.||+|++++
T Consensus 125 ~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~l 202 (526)
T PRK13581 125 AGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHT 202 (526)
T ss_pred cCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEcc
Confidence 446765322 2235578999999999999999999999999999986432 22334556555 8999999999999999
Q ss_pred CCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 110 PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 110 ~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
|...+++.++.. +.++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 203 P~t~~t~~li~~--~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPETRGLIGA--EELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHhhcCcCH--HHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 998888887742 355543 36789999999998877888888765
No 120
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.81 E-value=6e-07 Score=78.42 Aligned_cols=198 Identities=21% Similarity=0.250 Sum_probs=123.5
Q ss_pred CceEEEEcccHH--------------------hHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCCCHHHHh
Q 018506 45 FESVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVA 99 (355)
Q Consensus 45 ~mkIgiIG~G~m--------------------G~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~s~~e~~ 99 (355)
+|||+|.|+|+- |+.||..++++||+|++.+.|.+ ..+++.+.|+..+++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 588999999873 78899999999999999976643 45677788999999999999
Q ss_pred hcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHH-HHHHHhhchhhhccCCCCCceEEeCCCC
Q 018506 100 EASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN-ISAAVSNCILKEKKDSWENPVMLDAPVS 178 (355)
Q Consensus 100 ~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~-l~~~~~~~~~~~~~g~~~~~~~~~~pv~ 178 (355)
+.+.+.++.+|-....-.+... ++.+ .+++.+|.+++|.+|-..-. ++..+.... +..|. ..+-.+.+-
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Iare---i~~h--vpEgAVicnTCT~sp~vLy~~LE~~Lr~kR--~dVGv---ssmHPAgvP 150 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIARE---ILEH--VPEGAVICNTCTVSPVVLYYSLEGELRTKR--EDVGV---SSMHPAGVP 150 (340)
T ss_pred hcceEEEEecccchhhHHHHHH---HHhh--CcCCcEecccccCchhHHHHHhhhhhcCch--hhcCc---cccCCCCCC
Confidence 9999999999987655555544 3333 35788999999998764332 443332110 12220 111112222
Q ss_pred CChHHHhcCceEEEec--------CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 018506 179 GGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ- 249 (355)
Q Consensus 179 g~~~~~~~g~~~~~~g--------g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~- 249 (355)
|.+.+ ...++.| .+++..+++.++.++.|+.++.+.. ---+++.-....+....+.++.+-+.++.
T Consensus 151 Gtp~h----~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~q 225 (340)
T COG4007 151 GTPQH----GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQ 225 (340)
T ss_pred CCCCC----ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 1122222 3578899999999999998776553 11122222222333344455555555544
Q ss_pred HcCCCHHH
Q 018506 250 SLGISAST 257 (355)
Q Consensus 250 ~~Gi~~~~ 257 (355)
-.|.+.+.
T Consensus 226 Ii~AP~eM 233 (340)
T COG4007 226 IIGAPKEM 233 (340)
T ss_pred HhCCcHHH
Confidence 34444443
No 121
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.79 E-value=1.1e-07 Score=72.29 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhH
Q 018506 221 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 300 (355)
Q Consensus 221 g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
..|+..|++.|.+.++.+++++|...+|++.|+|..++.+++.....- ... .+ .=++|++..++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri---~~~------~~-------~pg~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI---GPH------YL-------RPGPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT---TSS------S--------S-SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc---ccc------cC-------CCCCCCCCcch
Confidence 468999999999999999999999999999999999999999864211 100 00 11246888999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 018506 301 AKDLNLALASAKEVGVDCPLTSQAQDIYA 329 (355)
Q Consensus 301 ~kd~~~~~~~a~~~gv~~pi~~~~~~~~~ 329 (355)
.||...+...+++.|.+.++++++.+.-+
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
No 122
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.78 E-value=4.6e-08 Score=90.98 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=87.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-+++||||+|.+|.++|+++..-|.+|..|+|++. -+.....+....+ ++|+++++|+|.+.+|...+...++...
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~ 221 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINAE 221 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHH
Confidence 4458999999999999999999977889999999876 2222334455555 9999999999999999998888877643
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.++ ++.++||++-+..-..+.+.+.+.+
T Consensus 222 --~l~~mk--~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 222 --ELAKMK--PGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred --HHHhCC--CCeEEEECCCccccCHHHHHHHHHh
Confidence 455433 6789999999997777888888765
No 123
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.75 E-value=4.4e-08 Score=94.37 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=89.8
Q ss_pred cccCCC--CCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 34 RFFSSQ--VPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 34 ~~~~~~--~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
.|.+.. .....-++|||||+|++|..+|+.+..-|.+|.+||+++.. ...++....+++++++.||+|++++|.
T Consensus 138 ~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Pl 213 (409)
T PRK11790 138 GWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPE 213 (409)
T ss_pred cccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCC
Confidence 566442 22345689999999999999999999999999999986432 112344556899999999999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
..+.+.++... .++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 214 t~~T~~li~~~--~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 214 TPSTKNMIGAE--ELALM--KPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred ChHHhhccCHH--HHhcC--CCCeEEEECCCCcccCHHHHHHHHHc
Confidence 88888776532 45543 36789999999988777888888865
No 124
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.74 E-value=3e-08 Score=94.09 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCch----HHHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS----HVLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~----~~~~v 118 (355)
..-++|||||+|+||+.+++.|...|++|.+||+..... .+.....++++++++||+|++++|... ....+
T Consensus 114 l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~l 188 (381)
T PRK00257 114 LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHL 188 (381)
T ss_pred cCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCcccccccc
Confidence 345789999999999999999999999999999754321 122234589999999999999999754 24444
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.. ..++.+ .++.++||++.+..-..+.+.+.+.+
T Consensus 189 i~~--~~l~~m--k~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 189 LDE--AFLASL--RPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred CCH--HHHhcC--CCCeEEEECCCCcccCHHHHHHHHHh
Confidence 432 244443 36789999999998888888887754
No 125
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=3.2e-08 Score=90.31 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|+|||.| .||.+|+..|.++|++|++|++... ++.+++++||+||++++.+..++.++
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~--- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW--- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh---
Confidence 44789999996 9999999999999999999987532 78899999999999999986666543
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++ +|.++||++.+.
T Consensus 221 ---ik-----~GaiVIDvgin~ 234 (301)
T PRK14194 221 ---LK-----PGAVVIDVGINR 234 (301)
T ss_pred ---cc-----CCcEEEEecccc
Confidence 32 567999998754
No 126
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.73 E-value=1.8e-08 Score=83.63 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=73.2
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--------------CCHHHHhhcCCEEEEeCCCch
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--------------ETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--------------~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|+|+|+|.||..+|..|+++|++|+++.|++ +.+.+++.|+... .+..+..+..|+||+|++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 7899999999999999999999999999988 8888777654321 11224567899999999975
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
++++++..+.+.+. ++..|+...++.. ..+.+.+.++
T Consensus 79 ~~~~~l~~l~~~~~-----~~t~iv~~qNG~g-~~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQALQSLKPYLD-----PNTTIVSLQNGMG-NEEVLAEYFP 115 (151)
T ss_dssp GHHHHHHHHCTGEE-----TTEEEEEESSSSS-HHHHHHCHST
T ss_pred chHHHHHHHhhccC-----CCcEEEEEeCCCC-cHHHHHHHcC
Confidence 77888887777764 3345665555543 2355555543
No 127
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.71 E-value=9.3e-08 Score=86.98 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||||||||+|.||..++..|.+. +++ +.+|||++++.+.+.+ .+....++.++++.++|+|++|.|.. ...+...
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHH
Confidence 48999999999999999999876 355 5688999999888765 45666788999888999999999854 5555543
Q ss_pred CCCccccCCCCCCCeEEEEcCCC---CHHHHHHHHHHHh
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTI---DPQTSRNISAAVS 156 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~---~~~~~~~l~~~~~ 156 (355)
. .++. ++-++.+|.. .+...+++.+...
T Consensus 80 ~---al~~-----Gk~Vvv~s~gAl~d~~~~~~L~~aA~ 110 (265)
T PRK13304 80 K---SLEN-----GKDVIIMSVGALADKELFLKLYKLAK 110 (265)
T ss_pred H---HHHc-----CCCEEEEchHHhcCHHHHHHHHHHHH
Confidence 3 3332 2334445442 3444555555543
No 128
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.71 E-value=3.4e-07 Score=79.06 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=88.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
|||+|||. |.||..++..|.++||+|+ +.++|+||+|+|-. .+.+++.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHHHHhC-
Confidence 69999988 9999999999999999986 25899999999964 6666665421
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcC--ceEEEec--CCHHHH
Q 018506 125 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG--TLTFMVG--GSEDAY 200 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g--~~~~~~g--g~~~~~ 200 (355)
.+++|.++++... .+.. + -.+-.+|++|... +..+ ...+++. .+++..
T Consensus 53 ----------~~v~Dv~SvK~~i----~~~~---------~----~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~ 104 (197)
T PRK06444 53 ----------NNFVEISSVKWPF----KKYS---------G----KIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYL 104 (197)
T ss_pred ----------CeEEeccccCHHH----HHhc---------C----CEEecCCCCCCCc-CcccccceEEEECCCCCHHHH
Confidence 2788999988642 2211 0 1233467777322 2221 2233332 356677
Q ss_pred HHHHHHHHHcCCCeEEeCCcchHHHHHHHHHH
Q 018506 201 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 232 (355)
Q Consensus 201 ~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~ 232 (355)
+.++++++ |.+++.+.+......+-.++.+
T Consensus 105 ~~~~~l~~--G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 105 NEINEMFR--GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred HHHHHHHc--CCEEEEeCHHHHHHHHHHHHHH
Confidence 88999998 7778888876666666555444
No 129
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.71 E-value=4e-08 Score=80.81 Aligned_cols=81 Identities=23% Similarity=0.281 Sum_probs=59.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh-cCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY-NGP 122 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl-~~~ 122 (355)
..+|+|||.|..|.+.|.+|.++|.+|.+..|..+ ..+...+.|..+. +..|+++.+|+|++.+|+. ...+++ +.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~-~q~~vy~~~I 81 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDE-VQPEVYEEEI 81 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HH-HHHHHHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChH-HHHHHHHHHH
Confidence 47899999999999999999999999999988766 5666677887664 8899999999999999975 445555 444
Q ss_pred Ccccc
Q 018506 123 NGLLQ 127 (355)
Q Consensus 123 ~~~l~ 127 (355)
.+.++
T Consensus 82 ~p~l~ 86 (165)
T PF07991_consen 82 APNLK 86 (165)
T ss_dssp HHHS-
T ss_pred HhhCC
Confidence 44443
No 130
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.71 E-value=9.7e-08 Score=89.15 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-+++||||+|++|..+|+.+. .-|.+|.+|+|.... +.....+... .+++++++.||+|++++|...+.+.++..
T Consensus 143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~ 220 (323)
T PRK15409 143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA 220 (323)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH
Confidence 45589999999999999999997 778899999986432 1122334443 48999999999999999998888887753
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
. .++.++ ++.++||++-+..-....+.+.+.+
T Consensus 221 ~--~l~~mk--~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 221 E--QFAKMK--SSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred H--HHhcCC--CCeEEEECCCccccCHHHHHHHHHc
Confidence 2 555433 6789999999987777788888764
No 131
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.69 E-value=1.3e-07 Score=82.25 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=66.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCCCCHHHHh-hcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~aDiVi~~v~~~~~~~~vl~ 120 (355)
...++|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. +....++ .++. .++|+++-|.......++.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~ 104 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIP 104 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHH
Confidence 355789999999999999999999999999999999998888764 5544433 4444 379999977544323333332
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ +.++|+...+...
T Consensus 105 ~l----------~~~~v~~~AN~~~ 119 (200)
T cd01075 105 QL----------KAKAIAGAANNQL 119 (200)
T ss_pred Hc----------CCCEEEECCcCcc
Confidence 21 3358888777643
No 132
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.68 E-value=1.1e-07 Score=87.38 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...+|+|||+|.||..+++.|...|.+|++++|++++.+.+.+.+.... .++.+.++++|+||.++|.....++.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l-- 227 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL-- 227 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH--
Confidence 4478999999999999999999999999999999988777766555432 356778889999999998652112222
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
+. ..++.+++|+++.+-.+
T Consensus 228 -----~~--~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 228 -----SK--LPKHAVIIDLASKPGGT 246 (287)
T ss_pred -----hc--CCCCeEEEEeCcCCCCC
Confidence 21 12467999999976443
No 133
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.65 E-value=1.1e-07 Score=88.41 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|++|+.+|+.+..-|.+|.+|||..... +.+.. ..+++++++.||+|++++|.....+.++...
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCHH
Confidence 455889999999999999999999999999999864321 12332 3489999999999999999888877766542
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.++ ++.++||++-+..-..+.+.+.+.+
T Consensus 218 --~~~~Mk--~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 218 --ELKLLK--DGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred --HHHhCC--CCeEEEECCCccccCHHHHHHHHHc
Confidence 454433 6789999999987777788887764
No 134
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.63 E-value=1.8e-07 Score=87.03 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-++|||||+|.+|..+|+.+..-|.+|.+|++.... .. .. ...+++++++.||+|++++|-....+..+...
T Consensus 145 l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 145 VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHH
Confidence 45579999999999999999999999999999986421 11 11 13589999999999999999888887766542
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 219 --~l~~m--k~ga~lIN~aRG~~Vde~AL~~aL~~ 249 (314)
T PRK06932 219 --TLALM--KPTAFLINTGRGPLVDEQALLDALEN 249 (314)
T ss_pred --HHHhC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 45543 36789999999987777788887764
No 135
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.62 E-value=1.9e-07 Score=87.05 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-.+|||||+|.+|..+|+.+..-|.+|.+|+|.... .... ..+++++++.||+|++++|...+.+.++...
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHH
Confidence 44578999999999999999999999999999986321 1112 3489999999999999999888887766543
Q ss_pred CccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.++.+ .++.++||++-+..-....+.+.+.+
T Consensus 219 --~~~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 219 --ELALM--KPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred --HHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 45543 36789999999887776778887764
No 136
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.60 E-value=1.5e-07 Score=89.11 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchH----HHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH----VLDV 118 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~----~~~v 118 (355)
...++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++.+|-... ...+
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccc
Confidence 355799999999999999999999999999999743211 111 1345899999999999999985432 3333
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
+.. +.++.+ .++.++||++-+..-..+.+.+.+.+
T Consensus 189 i~~--~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 189 ADE--KLIRSL--KPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred cCH--HHHhcC--CCCcEEEECCCchhcCHHHHHHHHHh
Confidence 322 234432 36789999999987777888887754
No 137
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.58 E-value=2.5e-07 Score=85.31 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=88.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.-.+|||+|+|.+|..+|++|...|..+..+.|++.+.+...+.+.. ..+.++.+.++|+|++|+|...++..++...
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~- 238 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINKK- 238 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHH-
Confidence 34789999999999999999999995566667887777666665555 4588899999999999999999999988753
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.+.+++ ++.++||++-+..-.-+.+.+.+.+
T Consensus 239 -~~~~mk--~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 239 -FIEKMK--DGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred -HHHhcC--CCeEEEeccccccccHHHHHHHHhc
Confidence 666544 6789999999987777778887764
No 138
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.56 E-value=1.8e-07 Score=87.22 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=73.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhC----C--CCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
...+|+|||+|.||..++..+.. ...+|++|||++++.+.+.+. + +..+.++++++.++|+|+.+++..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 34789999999999999986664 347899999999998887663 4 445678999999999998888765
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
+.++.. .+++ +++ +|++.+..+...+++...+
T Consensus 201 ~pvl~~--~~l~-----~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 201 EPLVRG--EWLK-----PGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred CCEecH--HHcC-----CCC-EEEeeCCCCcccccCCHHH
Confidence 233321 2332 344 6777777666666665544
No 139
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.55 E-value=2.6e-07 Score=84.47 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEe-CChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~d-r~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..-.+|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++++|+||+|++.+..++.++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~- 219 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW- 219 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe-
Confidence 3457899999 99999999999999999999995 654 46888899999999999986655532
Q ss_pred CCCccccCCCCCCCeEEEEcCCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
++ +|.++||++...
T Consensus 220 -----lk-----~GavVIDvGin~ 233 (296)
T PRK14188 220 -----IK-----PGATVIDVGINR 233 (296)
T ss_pred -----ec-----CCCEEEEcCCcc
Confidence 32 567999998754
No 140
>PLN02306 hydroxypyruvate reductase
Probab=98.50 E-value=6.1e-07 Score=85.59 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=83.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHH-HCCCcEEEEeCChhH-HHHH-HhCC------------CCCCCCHHHHhhcCCEEEE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~-~~G~~V~v~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~aDiVi~ 107 (355)
..-++|||||+|.+|+.+|+.|. .-|.+|.+||+++.. .+.. ...+ .....+++++++.||+|++
T Consensus 163 L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~l 242 (386)
T PLN02306 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISL 242 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEE
Confidence 45688999999999999999986 678999999987642 1111 1111 1224589999999999999
Q ss_pred eCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 108 MLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 108 ~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
++|-....+.++... .++.++ ++.++||++-+..-....+.+.+.+
T Consensus 243 h~Plt~~T~~lin~~--~l~~MK--~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 243 HPVLDKTTYHLINKE--RLALMK--KEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred eCCCChhhhhhcCHH--HHHhCC--CCeEEEECCCccccCHHHHHHHHHh
Confidence 999887887776642 455433 6789999999887666778777754
No 141
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.50 E-value=8.7e-07 Score=81.89 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...|++|||.|.+|..++..|...|.+|++++|++++.+...+.|.... .+..+.+.++|+||.++|.....++.+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~- 229 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLS- 229 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHH-
Confidence 3478999999999999999999999999999999988777777776543 3567788899999999986422233222
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+ .++.+++|+++....
T Consensus 230 ---~~-----~~g~vIIDla~~pgg 246 (296)
T PRK08306 230 ---KM-----PPEALIIDLASKPGG 246 (296)
T ss_pred ---cC-----CCCcEEEEEccCCCC
Confidence 12 245799999887644
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.40 E-value=5.3e-06 Score=65.81 Aligned_cols=104 Identities=24% Similarity=0.399 Sum_probs=77.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcE-EEEeCChhHHHHHHh-CCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V-~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
+||||||+|.+|......+.+.. .++ .++|+++++.+.+.+ .+....+|.+++++ +.|+|++++|+....+-+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 58999999999999999999873 454 588999999988754 67888899999987 7999999999886655544
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSN 157 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~~ 157 (355)
. .++. +-.++++- -...+++.+++.+...+
T Consensus 81 ~----~l~~----g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 81 K----ALEA----GKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp H----HHHT----TSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred H----HHHc----CCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 3 3322 12466653 23356777777776653
No 143
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.39 E-value=3.6e-06 Score=72.44 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=69.7
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
|+||+||+|.+|..+...+.+. +++ +.+|||+.+++..+.+ .+....++++|.+...|+++-|-. ++++++...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhHH
Confidence 6899999999999999988754 344 7899999999988776 455556899999999999999985 5688876654
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.|+. ..+.+|+..+...
T Consensus 80 ---~L~~---g~d~iV~SVGALa 96 (255)
T COG1712 80 ---ILKA---GIDVIVMSVGALA 96 (255)
T ss_pred ---HHhc---CCCEEEEechhcc
Confidence 4543 2344555555444
No 144
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.38 E-value=8.2e-07 Score=82.75 Aligned_cols=94 Identities=20% Similarity=0.312 Sum_probs=67.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTK--ETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
..++|+|||+|.||..+++.|...| ++|+++||++++...+.+ .|.... ++..+++..+|+||.|++.+.. ..++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~ 255 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV 255 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH
Confidence 4589999999999999999999865 689999999999877765 344322 3456777899999999988754 2222
Q ss_pred cCCCccccCCCCCCCeEEEEcCC
Q 018506 120 NGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.. .+... ..++.+++|.+.
T Consensus 256 ~~---~~~~~-~~~~~~viDlav 274 (311)
T cd05213 256 ER---AMKKR-SGKPRLIVDLAV 274 (311)
T ss_pred HH---HHhhC-CCCCeEEEEeCC
Confidence 21 11110 114568999984
No 145
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.36 E-value=1.5e-06 Score=80.95 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=49.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH----hC----C--CC--CCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G--VP--TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~----~~----g--~~--~~~s~~e~~~~aDiVi~~v~ 110 (355)
||||+|||+|.||..+|..++..|+ +|.++|+++++.+... +. + .. .+++. +.+++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 5899999999999999999999876 9999999887654321 11 1 11 23344 56789999999963
No 146
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.34 E-value=8.6e-07 Score=72.18 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=57.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhC--C----CCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDM--G----VPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~--g----~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...++.|||+|.+|++++..|.+.|.+ |++++|+.++++.+.+. + ....++..+.+.++|+||.|+|.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 558899999999999999999999987 99999999999888763 1 1234566677889999999998763
No 147
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.32 E-value=1.6e-06 Score=78.69 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|+|||. |.||.+|+..|.++|++|++|+.. +.++++.+++||+||++++.+..++..
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~---- 218 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE---- 218 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH----
Confidence 3478999999 999999999999999999999421 236888999999999999998666553
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+++ +|.++||++...
T Consensus 219 --~ik-----~GavVIDvgin~ 233 (284)
T PRK14179 219 --FVK-----EGAVVIDVGMNR 233 (284)
T ss_pred --Hcc-----CCcEEEEeccee
Confidence 332 567999998664
No 148
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.29 E-value=2.4e-06 Score=80.11 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=67.5
Q ss_pred CceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHh----CC--CCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..++||||+|.+|...+..|.. ...+|.+|||++++.+.+.+ .+ +..+.+++++++++|+|++|+|+.+
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~--- 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK--- 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 4789999999999998777764 34579999999999887654 24 3457899999999999999998752
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. ..+++ ++..|...++..|.
T Consensus 205 P~~~--~~~l~-----~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVK--ADWVS-----EGTHINAIGADAPG 227 (325)
T ss_pred cEec--HHHcC-----CCCEEEecCCCCcc
Confidence 2221 11332 45567667666664
No 149
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.29 E-value=3.5e-06 Score=78.24 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH----HhC--------CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF----SDM--------GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.||..+|..|+..|+ +|+++|++++..+.. .+. .+..+.+.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 799999999999999999999887 899999976654311 111 1233456665 68999999998743
No 150
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.29 E-value=2.8e-06 Score=77.61 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=70.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC----CCCCCCCHHHH-hhcCCEEEEeCCCch--HHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFEV-AEASDVVITMLPSSS--HVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~aDiVi~~v~~~~--~~~~ 117 (355)
.+++.|+|+|.+|.+++..|++.|++|++++|++++++.+.+. +.....+..+. ..++|+||.|+|... .++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 4689999999999999999999999999999999988777652 21122233332 357999999998641 1111
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
+... ...+ .++.+++|+++.++.+ .+.+...
T Consensus 197 ~~~~-~~~l-----~~~~~v~D~~y~p~~T--~ll~~A~ 227 (270)
T TIGR00507 197 PPVP-AEKL-----KEGMVVYDMVYNPGET--PFLAEAK 227 (270)
T ss_pred CCCC-HHHc-----CCCCEEEEeccCCCCC--HHHHHHH
Confidence 1000 0112 2457999999988765 3444443
No 151
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=5.5e-05 Score=65.37 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=124.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~ 123 (355)
.+.++|||.|..|.+...+-.+.++.+. +..|++++++.+.+.-+-...+.+...+-.+++|+.+|+. ....+...
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa~-- 86 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAAT-- 86 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHHh--
Confidence 4789999999999995555555555554 4478999998887743332334444445678888889875 33333221
Q ss_pred ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCC---CCCChHHHh--cCceEEEecCCHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP---VSGGVLAAE--AGTLTFMVGGSED 198 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p---v~g~~~~~~--~g~~~~~~gg~~~ 198 (355)
.+ ..+++++++||...... |.+.+.+ .|. +..--.| .+|...... +++...+..+|+.
T Consensus 87 -~~----~rpg~iv~HcSga~~~~---il~~~gr------~g~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~ 149 (289)
T COG5495 87 -SL----NRPGTIVAHCSGANGSG---ILAPLGR------QGC---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDV 149 (289)
T ss_pred -cc----cCCCeEEEEccCCCchh---hhhhhhh------cCC---cceeecccccccCCHHHHHhCcccEEEeeccccc
Confidence 12 34678999998876442 3333332 221 1111123 335555554 4555555567877
Q ss_pred HHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018506 199 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 257 (355)
Q Consensus 199 ~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~ 257 (355)
-...++++...+|.+++.+-+ +.-..+..+.|...+.....+.|+..+-+..|+|..+
T Consensus 150 g~ai~q~la~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e 207 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPE 207 (289)
T ss_pred ccHHHHHHHHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcc
Confidence 888899999999998777666 4555566666666666777889999999999988433
No 152
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.27 E-value=1.9e-05 Score=73.17 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCCh-hHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~-~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
+++||+|||+|+||...+..+.+. +.++. +|+|++ +++. ...+.....+..++..+.|+|++|+|+....+.+.
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~ 78 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA 78 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH
Confidence 458999999999999999999875 67765 679985 4433 12344445567777788999999999876655544
No 153
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.15 E-value=1e-05 Score=76.48 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=73.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhCC---C-------CCCCCHHHHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---V-------PTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
||||-|||+|.+|+.+|..|+++| ++|++-||+.++++++.+.. + .-.+.+.+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 689999999999999999999999 89999999999999887642 1 112345678889999999999764
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
.. .++.. .++ .+.-++|+|...+.. ..+.+..
T Consensus 81 ~~-~i~ka---~i~-----~gv~yvDts~~~~~~-~~~~~~a 112 (389)
T COG1748 81 DL-TILKA---CIK-----TGVDYVDTSYYEEPP-WKLDEEA 112 (389)
T ss_pred hH-HHHHH---HHH-----hCCCEEEcccCCchh-hhhhHHH
Confidence 43 33321 121 344577776666553 4444433
No 154
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.15 E-value=9.4e-06 Score=65.01 Aligned_cols=99 Identities=23% Similarity=0.355 Sum_probs=64.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHH-CCCcE-EEEeCChh-HH----HHH---HhCCCCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMK-AGYKM-AVHDVNCN-VM----KMF---SDMGVPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~-~G~~V-~v~dr~~~-~~----~~l---~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
|||+|+|+ |+||+.+++.+.+ .++++ .+++|+++ .. ..+ ...++.+.++++++++.+|+||-.. .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 79999999 9999999999998 67784 56688762 11 111 1346777899999999999999887 4566
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCH-HHHHHHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP-QTSRNISA 153 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~ 153 (355)
+.+.++. .++ .+.-+|..+|+.. +..+.+.+
T Consensus 80 ~~~~~~~---~~~-----~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 VYDNLEY---ALK-----HGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp HHHHHHH---HHH-----HT-EEEEE-SSSHHHHHHHHHH
T ss_pred hHHHHHH---HHh-----CCCCEEEECCCCCHHHHHHHHH
Confidence 6665543 232 2345666666664 44444444
No 155
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.14 E-value=1.3e-05 Score=77.54 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
..-.+|+|||.|.+|..+|..|...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++.+...+..
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~~----- 325 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIITL----- 325 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccCH-----
Confidence 3457899999999999999999999999999999988765444456543 4788999999999999765433221
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+..+ .++.+++|.+...
T Consensus 326 -e~~~~M--KpGAiLINvGr~d 344 (476)
T PTZ00075 326 -EHMRRM--KNNAIVGNIGHFD 344 (476)
T ss_pred -HHHhcc--CCCcEEEEcCCCc
Confidence 122221 2567999998875
No 156
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.10 E-value=1.9e-05 Score=71.47 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=68.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
+|||+|+|+ |.||..++..+.+. ++++. ++|+++++.......++...++++++++++|+|+.+.+.. ...+++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~-~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE-ATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH-HHHHHHHH
Confidence 489999998 99999999998864 57754 6898887665443345666788988888899999787643 44444432
Q ss_pred CCccccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 153 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~ 153 (355)
.++. +-.+++-++..+++..+++.+
T Consensus 80 ---al~~----G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 ---ALEH----GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHc----CCCEEEECCCCCHHHHHHHHH
Confidence 3332 113555544445666666655
No 157
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.09 E-value=2.1e-05 Score=73.04 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC----CCCC-CCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
...+|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. +... ..+.++++.++|+|+.|+|...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 34689999999999999999975 45 4699999999998877652 2232 4688889999999999999763
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
.++.. ++ .+|..|...++..|..
T Consensus 201 Pl~~~---~~-----~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 PVYPE---AA-----RAGRLVVAVGAFTPDM 223 (304)
T ss_pred ceeCc---cC-----CCCCEEEecCCCCCCc
Confidence 22321 23 2566777777766653
No 158
>PLN00203 glutamyl-tRNA reductase
Probab=98.08 E-value=9.1e-06 Score=80.37 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=57.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC--CCC----CCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...+|+|||+|.||..++..|...|. +|++++|++++++.+.+. +.. ..++..+++.++|+||.|++.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 45789999999999999999999996 699999999999888763 221 2346677888999999998655
No 159
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.08 E-value=2e-05 Score=70.45 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=60.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---Cc-EEEEeCChhHHHHHHhCCCCCCCCHHHH-hhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~~vl 119 (355)
.+||||||+|.||..++..|.+.+ ++ +.+++|++++.+.+.+. ....++++++ ...+|+|+-|-. ++.+++..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA 79 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH
Confidence 479999999999999999997643 45 45678988888888765 7788899996 688999999986 46777765
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
..
T Consensus 80 ~~ 81 (267)
T PRK13301 80 EG 81 (267)
T ss_pred HH
Confidence 44
No 160
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.08 E-value=3.5e-05 Score=73.72 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH-HhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~ 122 (355)
...+|+|+|+|.+|..++..+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+...+.. .+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~~~~-- 270 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGEHFE-- 270 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHHHHh--
Confidence 4568999999999999999999999999999999988766666666443 567888999999999876544443 221
Q ss_pred CccccCCCCCCCeEEEEcCCCCH-HHHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP-QTSRNISA 153 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~-~~~~~l~~ 153 (355)
.+ .++.++++.+.... -....+.+
T Consensus 271 --~m-----K~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 271 --NM-----KDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred --cC-----CCCcEEEEECCCCceeCHHHHHH
Confidence 22 25568888887654 23344444
No 161
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.06 E-value=2.7e-05 Score=74.97 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=70.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH-HhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD-VYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~-vl~~~ 122 (355)
.-.+|+|+|+|.+|..++..|...|.+|+++|+++.+.......|... .+.+++++.+|+||.++.+...+.. .+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~~~~-- 287 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAEHME-- 287 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHHHHh--
Confidence 457899999999999999999999999999999998876655566653 4678889999999999866544432 222
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+ .++.++++.+....
T Consensus 288 --~m-----K~GailiNvG~~d~ 303 (425)
T PRK05476 288 --AM-----KDGAILANIGHFDN 303 (425)
T ss_pred --cC-----CCCCEEEEcCCCCC
Confidence 22 25568888877653
No 162
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.06 E-value=1.3e-05 Score=74.65 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=50.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHH----HHhCC-----CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~----l~~~g-----~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|||+|||+|.+|.++|..|+..| ++|.++|+++++++. +.... ....++..+.+++||+||++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 68999999999999999999999 589999999877653 32211 011123345678999999998754
No 163
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.4e-05 Score=70.85 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=55.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh--CCCCC---C----CCHHHH-hhcCCEEEEeCCCchHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGVPT---K----ETPFEV-AEASDVVITMLPSSSHV 115 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~--~g~~~---~----~s~~e~-~~~aDiVi~~v~~~~~~ 115 (355)
|+|.|||+|.+|..+|+.|.+.||+|++.+++++++++..+ ....+ - +.+.++ +.++|+++.++.++ .+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HH
Confidence 78999999999999999999999999999999999988544 32211 1 123333 46789999998765 44
Q ss_pred HHHhc
Q 018506 116 LDVYN 120 (355)
Q Consensus 116 ~~vl~ 120 (355)
..++.
T Consensus 80 N~i~~ 84 (225)
T COG0569 80 NSVLA 84 (225)
T ss_pred HHHHH
Confidence 44443
No 164
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.03 E-value=2.3e-05 Score=73.22 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHH----Hh----CC----CCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMF----SD----MG----VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l----~~----~g----~~~~~s~~e~~~~aDiVi~~v 109 (355)
+.+||+|||+|.||..++..++..| .++.++|+++++++.. .. .+ +..+.+.+ ++++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 4579999999999999999999988 6899999988654321 11 11 12234444 779999999998
No 165
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.03 E-value=2.2e-05 Score=70.65 Aligned_cols=82 Identities=27% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc-C
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN-G 121 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~-~ 121 (355)
+..||+|||.|+-|.+-|.+|.++|.+|++--|.... .+...+.|.. +.+.+|+++.+|+|++.+|+. .-.+++. .
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe-~q~~vy~~~ 94 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDE-QQKEVYEKE 94 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchh-hHHHHHHHH
Confidence 4468999999999999999999999999877775544 5555666766 458999999999999999986 4456666 5
Q ss_pred CCcccc
Q 018506 122 PNGLLQ 127 (355)
Q Consensus 122 ~~~~l~ 127 (355)
+.+.++
T Consensus 95 I~p~Lk 100 (338)
T COG0059 95 IAPNLK 100 (338)
T ss_pred hhhhhc
Confidence 566665
No 166
>PLN02494 adenosylhomocysteinase
Probab=98.02 E-value=4.3e-05 Score=73.92 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH-HHHhcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~-~~vl~~~ 122 (355)
.-.+|+|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.+..+...+ ...+.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~L~-- 329 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDHMR-- 329 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHHHh--
Confidence 3478999999999999999999999999999999887655555666544 6788899999999987654332 33332
Q ss_pred CccccCCCCCCCeEEEEcCCCC-HHHHHHHHH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID-PQTSRNISA 153 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~-~~~~~~l~~ 153 (355)
.+ .++.++++.+... .-....+.+
T Consensus 330 --~M-----K~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 330 --KM-----KNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred --cC-----CCCCEEEEcCCCCCccCHHHHhh
Confidence 22 2556999998843 333334443
No 167
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.01 E-value=2.1e-05 Score=65.24 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=62.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH-HHHhcCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV-LDVYNGPN 123 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~-~~vl~~~~ 123 (355)
-+++.|+|.|..|+.+|+.|...|-.|++++++|-++-+....|..+. +.++++..+|++|.++-....+ .+.+.
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~~--- 98 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHFR--- 98 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHHH---
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHHH---
Confidence 367999999999999999999999999999999988766666787754 7899999999999987654221 12222
Q ss_pred ccccCCCCCCCeEEEEcCCCCHH
Q 018506 124 GLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 124 ~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+ +++.++.+.+....+
T Consensus 99 -~m-----kdgail~n~Gh~d~E 115 (162)
T PF00670_consen 99 -QM-----KDGAILANAGHFDVE 115 (162)
T ss_dssp -HS------TTEEEEESSSSTTS
T ss_pred -Hh-----cCCeEEeccCcCcee
Confidence 12 256788877765544
No 168
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.99 E-value=7.6e-06 Score=79.45 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=52.3
Q ss_pred ceEEEEcccHHhHHHHH--HH----HHCCCcEEEEeCChhHHHHHHhC------------CCCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGFRMAS--NL----MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~--~L----~~~G~~V~v~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~aDiVi~ 107 (355)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..+++..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998665 34 45578999999999887664331 13346788899999999999
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+++.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9975
No 169
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.99 E-value=9e-06 Score=77.64 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=61.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCC------hhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVN------CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~------~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..-++|+|||+|..|.+.|.+|...|++|++--|. ...-+.+.+.|..+ .++.|+++.||+|++.+|+. .-.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~ 111 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHS 111 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHH
Confidence 45589999999999999999999999999954443 33445555567755 68999999999999999987 444
Q ss_pred HHhcCCCccc
Q 018506 117 DVYNGPNGLL 126 (355)
Q Consensus 117 ~vl~~~~~~l 126 (355)
.+...+.+.+
T Consensus 112 ~v~~~i~p~L 121 (487)
T PRK05225 112 DVVRAVQPLM 121 (487)
T ss_pred HHHHHHHhhC
Confidence 4444433444
No 170
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.97 E-value=2e-05 Score=62.87 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=57.2
Q ss_pred eEEEEc-ccHHhHHHHHHHHHC-CCcEEEE-eCChhHHHHHHhCC--CC-C---CCCHHHH-hhcCCEEEEeCCCchHHH
Q 018506 47 SVGFIG-LGNMGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMG--VP-T---KETPFEV-AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~-G~~V~v~-dr~~~~~~~l~~~g--~~-~---~~s~~e~-~~~aDiVi~~v~~~~~~~ 116 (355)
||+||| .|.+|..++..|.+. ++++..+ +++.++.+.+...+ +. . ..+..+. ..++|+||+|+|+....+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 699999 599999999999985 7776654 66544433333322 11 0 0111111 248999999999874444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
++... ... ..+|+++||+|+...
T Consensus 81 -~~~~~---~~~--~~~g~~viD~s~~~~ 103 (122)
T smart00859 81 -IAPLL---PKA--AEAGVKVIDLSSAFR 103 (122)
T ss_pred -HHHHH---Hhh--hcCCCEEEECCcccc
Confidence 33211 111 125689999998753
No 171
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.97 E-value=1.9e-05 Score=73.46 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=51.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC--------C--CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+||+|||+|.+|.+++..|+..| ++|.++|+++++++.+... + ........+.++++|+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 48999999999999999999999 6899999999887654431 1 112223345578999999998653
No 172
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.96 E-value=1.5e-05 Score=77.29 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCCC--CCCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~~--~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...+|+|||+|.||..++..|...| .+|++++|++++++.+.+ .+.. ...+..+++..+|+||.|++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 3478999999999999999999999 789999999998877765 3322 22456677889999999987664
No 173
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.93 E-value=9.5e-05 Score=67.28 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=51.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCC--hhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~--~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
||||||||+|.||..+++.+.+. +.++ .++++. .++.......+...+++.+++..+.|+|+.|.|.. ...+..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~ 78 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV 78 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH
Confidence 58999999999999999999876 4554 344443 22322222235667788887745699999999875 444433
No 174
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.93 E-value=5.2e-05 Score=71.16 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=56.2
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+++|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. ++. ..+++++++.++|+|+.|+|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 3689999999999999999974 55 3699999999998887652 433 3578889999999999999875
No 175
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.93 E-value=7.1e-05 Score=71.92 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH-hcCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v-l~~~ 122 (355)
.-.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|+... +.++++..+|+||.|+.....+..- +.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~~l~-- 277 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGEHFE-- 277 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHHHHh--
Confidence 3478999999999999999999999999999999999888877887543 4678888999999998766544442 22
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
.++ ++.++++.+..
T Consensus 278 --~mk-----~GgilvnvG~~ 291 (413)
T cd00401 278 --QMK-----DGAIVCNIGHF 291 (413)
T ss_pred --cCC-----CCcEEEEeCCC
Confidence 222 45588887754
No 176
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.92 E-value=3.3e-05 Score=71.64 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=46.4
Q ss_pred EEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHH----HHhC--------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 48 VGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM--------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~----l~~~--------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|+|||+|.||..+|..|+..|+ +|+++|+++++.+. +.+. .+..+.+ .+.+++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecC
Confidence 6899999999999999998877 99999999876431 1111 1122344 456789999999874
No 177
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.92 E-value=6.7e-05 Score=73.98 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCCC--CCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK--ETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
..++++|+|+|.+|.+++..|.+.|++|++++|++++++.+.+. +.... .+..+ +.++|+||.|+|....+..
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~--- 406 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK--- 406 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchh---
Confidence 44789999999999999999999999999999999988877653 21111 12222 4689999999997643211
Q ss_pred CCCccccCCCCCCCeEEEEcCCCCHHHH
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTIDPQTS 148 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~~~~~ 148 (355)
.+ . .+++|+...++.+.
T Consensus 407 ----~l------~-~~v~D~~Y~P~~T~ 423 (477)
T PRK09310 407 ----AF------P-PCVVDINTLPKHSP 423 (477)
T ss_pred ----HH------h-hhEEeccCCCCCCH
Confidence 11 1 38999999876653
No 178
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.92 E-value=1.5e-05 Score=65.38 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHh--------C--CCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSD--------M--GVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~--------~--g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
|||+|||+ |.+|..++..|...+. ++.++|+++++++.... . .........+.+++||+||++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 79999999 9999999999998874 79999999876543321 1 123334566777899999998643
No 179
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.91 E-value=2.5e-05 Score=75.38 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C-CC--CCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...||.|||+|.||..++..|.+.|. ++++++|++++++.+.+. + .. ..++..+.+.++|+||.|++.+..
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 34789999999999999999999995 699999999999888773 2 22 234556778899999999987743
No 180
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.90 E-value=2.9e-05 Score=73.96 Aligned_cols=69 Identities=25% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh-CCC--CCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGV--PTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~-~g~--~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|||+|.||.-.|++|..+| ..|++.||+.++++.+++ .++ ...++..+.+.++|+||+++..+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 5578999999999999999999999 579999999999999887 443 33456677889999999997655
No 181
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.90 E-value=2.7e-05 Score=75.76 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=56.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCC--CCCHHHHhhcCCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~--~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
...+|+|||+|.||..++..|...|. +|++++|++++++.+.+ .|... ..+..+.+..+|+||.|++.+.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 44789999999999999999999997 79999999999887765 34322 2345567789999999998764
No 182
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.89 E-value=6.9e-05 Score=63.16 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=59.2
Q ss_pred CCCceEEEEcccHH-hHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~m-G~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
....+|.|||.|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.+++.+.. +..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~i----i~~ 103 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPGL----VKG 103 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCce----ecH
Confidence 45688999999997 9999999999999999999973 3566788899999999998632 221
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+.++ ++.++||.+...
T Consensus 104 --~~~~-----~~~viIDla~pr 119 (168)
T cd01080 104 --DMVK-----PGAVVIDVGINR 119 (168)
T ss_pred --HHcc-----CCeEEEEccCCC
Confidence 1232 346888887643
No 183
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.87 E-value=0.0022 Score=60.31 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=155.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----C-C--------------------CCCCCCHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M-G--------------------VPTKETPFEV 98 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----~-g--------------------~~~~~s~~e~ 98 (355)
|.+|-|+|+|..+.-+|..|.+.+. .|-+++|...+.+.+.+ . + -....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 4579999999999999999998775 59999998777665433 1 1 1224567777
Q ss_pred hhcCCEEEEeCCCchHHHHHhcCCCc-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch----hhhccCCCCCceEE
Q 018506 99 AEASDVVITMLPSSSHVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI----LKEKKDSWENPVML 173 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~vl~~~~~-~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~----~~~~~g~~~~~~~~ 173 (355)
..+=|.+|+|||.+ +-.+|+.++.. .+.. .+ .+|..|...-+. .-+...+.... +..-..+..+.++.
T Consensus 81 ~g~WdtlILavtaD-AY~~VL~ql~~~~L~~---vk--~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 81 EGEWDTLILAVTAD-AYLDVLQQLPWEVLKR---VK--SIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred cccccEEEEEechH-HHHHHHHhcCHHHHhh---CC--EEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceec
Confidence 78899999999986 66788887742 3332 22 333333332221 22333332210 00000111122333
Q ss_pred eCC-CCCChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH-------------HHHH-----
Q 018506 174 DAP-VSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK-------------ICNN----- 231 (355)
Q Consensus 174 ~~p-v~g~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K-------------l~~n----- 231 (355)
+.- ...-...+.+. .+++| ++....+++..+++.+|-.+..+..+=.|+..- ...|
T Consensus 154 d~~~~~~vlt~~vK~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~ 231 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKK--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEE 231 (429)
T ss_pred cCCCcceehhhhhhc--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCC
Confidence 321 11111112222 33444 344577889999999996665554432332221 0001
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC----cc---cccCCCCCCCc-----
Q 018506 232 ------------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSAR----CW---SSDSYNPVPGV----- 281 (355)
Q Consensus 232 ------------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~----s~---~~~~~~~~~~~----- 281 (355)
.+..-+.....|++.+..+.|++.=.+++.+++-.-. +- .-+.+...+..
T Consensus 232 ~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYL 311 (429)
T PF10100_consen 232 DGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYL 311 (429)
T ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHH
Confidence 1111356778899999999999998888888862100 00 00011111100
Q ss_pred --------ccC---CC-CCCCC---C------------CCcchhhHHHH----HHHHHHHHHHhCCCChHHHHHHHHHHH
Q 018506 282 --------MEG---VP-ASRNY---G------------GGFASKLMAKD----LNLALASAKEVGVDCPLTSQAQDIYAK 330 (355)
Q Consensus 282 --------~~~---~~-~~~~~---~------------~~~~~~~~~kd----~~~~~~~a~~~gv~~pi~~~~~~~~~~ 330 (355)
+-+ .| .++.| + +-+.+..+.|+ +..+...|+.+|+++|..+...+.|+.
T Consensus 312 LYVRYtsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~ 391 (429)
T PF10100_consen 312 LYVRYTSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYES 391 (429)
T ss_pred HHHHhhhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 000 00 01111 0 01123333322 467789999999999999999999988
Q ss_pred HHHC
Q 018506 331 LCEN 334 (355)
Q Consensus 331 ~~~~ 334 (355)
..++
T Consensus 392 ~l~~ 395 (429)
T PF10100_consen 392 KLSQ 395 (429)
T ss_pred HHHH
Confidence 7764
No 184
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.87 E-value=9.2e-05 Score=68.96 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CCCC--CCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MGVP--TKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g~~--~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
...+++|||+|..+...++.+... -.+|.+|+|++++.+.+.+ .+.. .+++.+++++++|+|+.|+++.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~-- 204 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE-- 204 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC--
Confidence 346899999999999999988864 2469999999999887664 2333 36889999999999999998652
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ +|..|...++..|.
T Consensus 205 -P~~~~--~~l~-----~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 -PLLQA--EDIQ-----PGTHITAVGADSPG 227 (315)
T ss_pred -ceeCH--HHcC-----CCcEEEecCCCCcc
Confidence 22221 2443 45677777766664
No 185
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.87 E-value=8.2e-05 Score=69.82 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=67.3
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHh-----CCC--CCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~-----~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+ .++ ....+.++++.++|+|+.|+|...
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~-- 204 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT-- 204 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC--
Confidence 4679999999999999988764 34 469999999999887765 133 346788899999999999998763
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. .+++ +|+.|+...+..|.
T Consensus 205 -p~i~---~~l~-----~G~hV~~iGs~~p~ 226 (325)
T PRK08618 205 -PVFS---EKLK-----KGVHINAVGSFMPD 226 (325)
T ss_pred -cchH---HhcC-----CCcEEEecCCCCcc
Confidence 2232 2443 45677777766664
No 186
>PRK06046 alanine dehydrogenase; Validated
Probab=97.86 E-value=5.5e-05 Score=70.98 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+|+|||+|.+|...+..|... + ..|.+|||++++.+++.+. + +...++.+++++ +|+|++|+|+..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~- 205 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK- 205 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC-
Confidence 346899999999999999999853 3 3589999999998877652 3 234678888886 999999999752
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ +++.|...++..|.
T Consensus 206 --P~~~~--~~l~-----~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 --PVVKA--EWIK-----EGTHINAIGADAPG 228 (326)
T ss_pred --cEecH--HHcC-----CCCEEEecCCCCCc
Confidence 22221 1332 45566666666654
No 187
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.84 E-value=7.6e-05 Score=64.61 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCC----CCC---HHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPT----KET---PFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~----~~s---~~e~~~~aDiVi~~v~ 110 (355)
+.+++.|+|. |.+|..++..|++.|++|++++|++++++.+.+. +... ..+ ..++++++|+||.+.|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 4578999995 9999999999999999999999999988776541 1111 122 3467789999999998
Q ss_pred CchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 111 SSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 111 ~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.+..... ... .. ..++.+++|..-..+.
T Consensus 107 ~g~~~~~---~~~-~~----~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 107 AGVELLE---KLA-WA----PKPLAVAADVNAVPPV 134 (194)
T ss_pred CCceech---hhh-cc----cCceeEEEEccCCCCC
Confidence 7643111 101 11 1124688888665543
No 188
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.83 E-value=6e-05 Score=69.80 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-----C--CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
...+++|||+|..|...+..+..- . .+|.+|+|++++.+.+.+. + +..++++++++.+||+|+.+++..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 347899999999999999998864 2 3699999999998877542 3 3456899999999999999998653
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++. .++++ ++..|.-..+..|.
T Consensus 195 --P~~~--~~~l~-----pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 --PIFN--RKYLG-----DEYHVNLAGSNYPN 217 (301)
T ss_pred --cEec--HHHcC-----CCceEEecCCCCCC
Confidence 2222 12443 34566666665554
No 189
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.81 E-value=6.4e-05 Score=70.68 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=56.0
Q ss_pred CceEEEEcccHHhHHHHHHHHH-CC-CcEEEEeCChhHHHHHHhC-----CCC--CCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++|+|||+|.+|...+..|.. .+ .+|.+|+|++++++.+.+. ++. ..+++++++.++|+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 4689999999999999998885 44 5799999999999888652 333 3578889999999999998864
No 190
>PRK04148 hypothetical protein; Provisional
Probab=97.81 E-value=0.00011 Score=59.17 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=59.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+.+||.+||+| .|..+|..|++.|++|+..|.+++.++..++.+.. ......+..+++|+|-.+-|.++-...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~ 94 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI 94 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence 34789999999 99999999999999999999999999888776543 2344557788999999998876444343
No 191
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.80 E-value=8.1e-05 Score=69.40 Aligned_cols=94 Identities=18% Similarity=0.256 Sum_probs=58.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHh---C-CC--CCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSD---M-GV--PTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~---~-g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..+++|||+|..|..-+..+... + .+|.+|+|++++++++.+ . +. ..++++++++++||+|+.|++.....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 46899999999999999988763 3 369999999999887765 2 33 35789999999999999999875310
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. .+++ ++..|...++..|.
T Consensus 207 P~~~~--~~l~-----~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 PVFDA--EWLK-----PGTHINAIGSYTPG 229 (313)
T ss_dssp ESB-G--GGS------TT-EEEE-S-SSTT
T ss_pred ccccH--HHcC-----CCcEEEEecCCCCc
Confidence 22221 2443 45677777766664
No 192
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.75 E-value=8.7e-05 Score=67.71 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=96.7
Q ss_pred Cccccccccccccc----ccccc--cccCCCCCC--CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 15 SNLKSTVLLSSPFQ----SSAMR--RFFSSQVPS--CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 15 ~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~--~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+.+-+++|+|-..+ +...| +|.+--+.- -.-.++||||+|.+|+-+|.++..-|..|+.||.- ...+...+
T Consensus 108 AEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a 186 (406)
T KOG0068|consen 108 AELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEA 186 (406)
T ss_pred HHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHh
Confidence 34556777765222 22222 566553321 22378999999999999999999999999989853 22234445
Q ss_pred CCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 018506 87 MGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 157 (355)
Q Consensus 87 ~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~ 157 (355)
.|+... +.+|++..||+|-+-+|-..+++.++... .++.++ +|..||+++.+..-....+.+.+..
T Consensus 187 ~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~--tfA~mK--kGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 187 FGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDE--TFAKMK--KGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred ccceee-eHHHHHhhcCEEEEccCCCcchhhccCHH--HHHHhh--CCcEEEEecCCceechHHHHHHHhc
Confidence 666654 89999999999999999888888877653 344433 7889999999887666777776653
No 193
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.74 E-value=0.00024 Score=64.67 Aligned_cols=103 Identities=17% Similarity=0.310 Sum_probs=65.3
Q ss_pred CceEEEEc-ccHHhHHHHHHHHH-CCCcE-EEEeCC-hhHH----HHHHh---CCCCCCCCHHHHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIG-LGNMGFRMASNLMK-AGYKM-AVHDVN-CNVM----KMFSD---MGVPTKETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~-~G~~V-~v~dr~-~~~~----~~l~~---~g~~~~~s~~e~~~~aDiVi~~v~~~~ 113 (355)
||||+|+| +|.||..+++.+.+ .++++ .++||. ++.. ..+.. .++..+++++++...+|+||.+.+..
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~- 79 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE- 79 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-
Confidence 47999999 69999999999986 46775 467853 3221 12211 34566678888755799999999754
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
...+.+.. .++. +-.+|+-++...+++.+.+.+..
T Consensus 80 ~~~~~~~~---al~~----g~~vVigttg~~~e~~~~l~~aA 114 (266)
T TIGR00036 80 GVLNHLKF---ALEH----GVRLVVGTTGFSEEDKQELADLA 114 (266)
T ss_pred HHHHHHHH---HHHC----CCCEEEECCCCCHHHHHHHHHHH
Confidence 54444432 3332 12356556555566666665554
No 194
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.74 E-value=5.5e-05 Score=63.39 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=50.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-----CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |..|+.|+.-..++||+|+..-||++++...... .+.--+++.+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 89999975 9999999999999999999999999998664321 11112344567778999998864
No 195
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.74 E-value=7.7e-05 Score=69.75 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=48.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHH--H---Hh---CC----CCCCCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM--F---SD---MG----VPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~--l---~~---~g----~~~~~s~~e~~~~aDiVi~~v 109 (355)
+.+||+|||+|.||..+|..++..|+ +|.++|+++++++. + .. .+ +..+.+. +++++||+||++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34799999999999999999999996 89999999885421 1 11 11 2223454 6778999999986
No 196
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.73 E-value=0.0001 Score=69.51 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCceEEEEcccHHh-HHHHHHHHHCCC--c-EEEEeCChhHHHHHHh-CCC-CCCCCHHHHhhc--CCEEEEeCCCchH
Q 018506 43 CQFESVGFIGLGNMG-FRMASNLMKAGY--K-MAVHDVNCNVMKMFSD-MGV-PTKETPFEVAEA--SDVVITMLPSSSH 114 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG-~~ia~~L~~~G~--~-V~v~dr~~~~~~~l~~-~g~-~~~~s~~e~~~~--aDiVi~~v~~~~~ 114 (355)
++++||||||+|.++ ...+..+.+.+. + |.++|+++++++.+.+ .++ ...+|.++++++ .|+|++++|+...
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 357899999999555 568888888764 3 6788999999988877 455 377899999875 5999999999877
Q ss_pred HHHHhc
Q 018506 115 VLDVYN 120 (355)
Q Consensus 115 ~~~vl~ 120 (355)
.+-++.
T Consensus 81 ~e~~~~ 86 (342)
T COG0673 81 AELALA 86 (342)
T ss_pred HHHHHH
Confidence 666544
No 197
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=0.00017 Score=67.84 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=65.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CC--CCCCCCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
..+++|||+|..+...++.+..- -.+|.+|+|++++.+.+.+ .+ +..+++++++++++|+|+.|+++... .
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~-~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN-A 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC-C
Confidence 46799999999999988877653 2479999999999887664 23 33468999999999999999975421 1
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.++.. ++++ +|..|.-..+..|.
T Consensus 208 Pvl~~--~~lk-----pG~hV~aIGs~~p~ 230 (346)
T PRK07589 208 TILTD--DMVE-----PGMHINAVGGDCPG 230 (346)
T ss_pred ceecH--HHcC-----CCcEEEecCCCCCC
Confidence 12221 2443 45566666665554
No 198
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.69 E-value=0.00021 Score=68.22 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=52.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC---C---CCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~aDiVi~~v~ 110 (355)
..+|.|||+|.+|...++.+...|.+|+++||++++.+.+... +... . .++.+.+.++|+||.+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 4579999999999999999999999999999999988877653 2211 1 234566789999999873
No 199
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.69 E-value=9.7e-05 Score=67.89 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=54.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-----C-C--CCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-V--PTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-----g-~--~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+|.|||+|.+|++++..|.+.|. +|+++||+.++++.+.+. . . ....+..+.+.++|+||.|+|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3689999999999999999999997 699999999999887652 1 1 11234455667899999998754
No 200
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.67 E-value=0.0001 Score=68.70 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=50.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHH----hC-----CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFS----DM-----GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~----~~-----g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
.+||+|||+|.+|..+|..|...|. ++.++|++.++++... +. ......+..+.+++||+||++.-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 4799999999999999999999887 7999999887754332 21 12222344566799999999863
No 201
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.67 E-value=5.1e-05 Score=60.45 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=56.1
Q ss_pred eEEEEc-ccHHhHHHHHHHHHCCC-c-EEEEeCChhHHHHHHhC--------CCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 47 SVGFIG-LGNMGFRMASNLMKAGY-K-MAVHDVNCNVMKMFSDM--------GVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~G~-~-V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
||+||| .|.+|..+.+.|.+.-+ + +.++.++.+.-+.+... .....+...+.+.++|+||+|+|+. ..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence 799999 99999999999998532 3 55667665222222221 1122222334558999999999875 44
Q ss_pred HHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+.... +++ ++..|||.|+..
T Consensus 80 ~~~~~~---~~~-----~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELAPK---LLK-----AGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHH---HHH-----TTSEEEESSSTT
T ss_pred HHHHHH---Hhh-----CCcEEEeCCHHH
Confidence 444432 232 456899998865
No 202
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.67 E-value=0.00015 Score=66.58 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHhC-C----CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-G----VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~~-g----~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|.+|.+++..|.+.| .+|++++|+.++++.+.+. + +....+..+.+..+|+||.|+|..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 3468999999999999999999999 7899999999998887653 1 111113345667899999999865
No 203
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.65 E-value=0.00011 Score=66.88 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=49.2
Q ss_pred EEEEcc-cHHhHHHHHHHHHCC----CcEEEEeCChhHHHHHHh-----------CCCCCCCCHHHHhhcCCEEEEeC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-----------MGVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G----~~V~v~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~aDiVi~~v 109 (355)
|+|||+ |.||..++..|+..| .+|.++|+++++++.... ..+..++++.+++++||+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999998 789999998876544221 12233566688899999999965
No 204
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.64 E-value=0.00043 Score=63.59 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHH--HHHHhCCCCC-CCCHHHHhh-----cCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVM--KMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~-----~aDiVi~~v~~~ 112 (355)
++++||||||+|++|+.+...+.+. +.++ .++|++++.. +...+.|+.. .++.+++++ +.|+||.+++..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 3568999999999999988888764 4564 5778988642 3344467765 467888874 589999999876
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+.+.... ..+ .|+.++|.+...
T Consensus 82 ~H~e~a~~----a~e-----aGk~VID~sPA~ 104 (302)
T PRK08300 82 AHVRHAAK----LRE-----AGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHH----HHH-----cCCeEEECCccc
Confidence 44433221 221 456788877654
No 205
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00031 Score=65.44 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=70.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhHHHHHHh----CC---CCCCCCHHHHhhcCCEEEEeCCCchH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG---VPTKETPFEVAEASDVVITMLPSSSH 114 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~~~~l~~----~g---~~~~~s~~e~~~~aDiVi~~v~~~~~ 114 (355)
....++|||+|..+......+.+- ..+|.+|+|+++..+++.. .+ +..++|.+++++.||+|+.|+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 346799999999999999999864 2479999999999888763 23 4678899999999999999999864
Q ss_pred HHHHhcCCCccccCCCCCCCeEEEEcCCCCHHH
Q 018506 115 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 147 (355)
Q Consensus 115 ~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~ 147 (355)
.++.. .+++ ++..|..+++..|..
T Consensus 208 --Pil~~--~~l~-----~G~hI~aiGad~p~k 231 (330)
T COG2423 208 --PVLKA--EWLK-----PGTHINAIGADAPGK 231 (330)
T ss_pred --CeecH--hhcC-----CCcEEEecCCCCccc
Confidence 33322 2443 455666666555543
No 206
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.60 E-value=0.00015 Score=71.17 Aligned_cols=67 Identities=25% Similarity=0.422 Sum_probs=54.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh-CCCCC-----C--CCHHHH-hhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPT-----K--ETPFEV-AEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~-~g~~~-----~--~s~~e~-~~~aDiVi~~v~~~ 112 (355)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .+... . ....++ +.++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 68999999999999999999999999999999999988865 43221 1 123334 57899999999875
No 207
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.58 E-value=0.00047 Score=51.31 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=40.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHH
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
....+++|+|.|.+|..++..|.+. +.+|.+||| |++|.|++.+..+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~ 68 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV 68 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence 3457899999999999999999998 678999998 9999999766443
No 208
>PRK11579 putative oxidoreductase; Provisional
Probab=97.55 E-value=0.0012 Score=62.46 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred CceEEEEcccHHhHH-HHHHHHHC-CCcE-EEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHh
Q 018506 45 FESVGFIGLGNMGFR-MASNLMKA-GYKM-AVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~-ia~~L~~~-G~~V-~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl 119 (355)
++||||||+|.+|.. .+..+.+. +.++ .++|+++++... ...+....++.+++++ +.|+|++|+|+....+.++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 56666654 5675 478999877542 1124556789999985 5799999999887666655
Q ss_pred cCCCccccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHh
Q 018506 120 NGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVS 156 (355)
Q Consensus 120 ~~~~~~l~~~~~~~~~ivi~~-st~~~~~~~~l~~~~~ 156 (355)
.. ++. +..++++- -..+..+.+++.+...
T Consensus 83 ~a----l~a----GkhVl~EKPla~t~~ea~~l~~~a~ 112 (346)
T PRK11579 83 AA----LEA----GKHVVVDKPFTVTLSQARELDALAK 112 (346)
T ss_pred HH----HHC----CCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 42 321 11355542 2334555666655543
No 209
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.54 E-value=0.00026 Score=66.92 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=57.0
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEE-EeCChhHHHHHHh----C-CC--CCCCCHH-HHhhcCCEEEEeCCCch
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSD----M-GV--PTKETPF-EVAEASDVVITMLPSSS 113 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v-~dr~~~~~~~l~~----~-g~--~~~~s~~-e~~~~aDiVi~~v~~~~ 113 (355)
|+||+|||+ |.+|..+++.|.+. ++++.. ++|. +..+.+.+ . +. ....+.+ ...+++|+||+|+|+..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~ 80 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV 80 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH
Confidence 589999997 99999999999976 567644 5542 22222221 1 11 0122222 24468999999999864
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
.. ++... .++ .|+.|||.|+...-
T Consensus 81 ~~-~~v~~---a~~-----aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 SM-DLAPQ---LLE-----AGVKVIDLSADFRL 104 (343)
T ss_pred HH-HHHHH---HHh-----CCCEEEECCcccCC
Confidence 43 33322 222 45789999987643
No 210
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.53 E-value=0.00074 Score=65.72 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=50.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHC--------C--Cc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~ 110 (355)
+++||||||+|.||+.+++.|.++ | .+ +.+++|++++...+...+...+++.++++. +.|+|+.+++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 458999999999999999888654 2 34 457799887754332234456778888885 4699999986
Q ss_pred Cc
Q 018506 111 SS 112 (355)
Q Consensus 111 ~~ 112 (355)
..
T Consensus 82 ~~ 83 (426)
T PRK06349 82 GI 83 (426)
T ss_pred Cc
Confidence 54
No 211
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.53 E-value=0.0017 Score=61.08 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=55.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--Cc-EEEEeCChhHHHHHHh-CCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~-V~v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..||||||+ .||...+..+.+.. .+ |.++|+++++++++.+ .|+...++.++++++.|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 478999999 68999999998754 56 4578999999998877 5777889999999889999999865
No 212
>PRK15076 alpha-galactosidase; Provisional
Probab=97.53 E-value=0.0001 Score=71.71 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=49.4
Q ss_pred CceEEEEcccHHhHHHHH--HHH----HCCCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEE
Q 018506 45 FESVGFIGLGNMGFRMAS--NLM----KAGYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 106 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~--~L~----~~G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi 106 (355)
|+||+|||+|.||...+. .++ -.+.+|+++|+++++++.... .+ +..+++..+++++||+||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 479999999999966655 443 235689999999988763211 12 334667789999999999
Q ss_pred EeCCC
Q 018506 107 TMLPS 111 (355)
Q Consensus 107 ~~v~~ 111 (355)
+++-.
T Consensus 81 ~ti~v 85 (431)
T PRK15076 81 NAIQV 85 (431)
T ss_pred Eeeee
Confidence 99744
No 213
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00042 Score=63.18 Aligned_cols=77 Identities=12% Similarity=0.205 Sum_probs=60.3
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-.+|.|||.|. +|.+++..|.+.|..|+++++.. .++.+.+++||+||.+++.+.-+..
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~---- 217 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK---- 217 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH----
Confidence 3457899999988 99999999999999999998742 3577888999999999988643222
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 218 --~~vk-----~gavVIDvGi~~ 233 (286)
T PRK14175 218 --DVVK-----EGAVIIDVGNTP 233 (286)
T ss_pred --HHcC-----CCcEEEEcCCCc
Confidence 1332 457999987653
No 214
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.48 E-value=0.00033 Score=66.94 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=55.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC---CcEEEEeCChhHHHHHHh----C--C---CCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSD----M--G---VPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G---~~V~v~dr~~~~~~~l~~----~--g---~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
..+++|||+|..+......+..-- .+|.+|+|++++++.+.+ . + +..+++.++++++||+|+.|+++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 468999999999999999988732 379999999999887654 1 2 345789999999999999998753
No 215
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.47 E-value=0.00031 Score=65.41 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=47.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-------CCCCCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-------g~~~~~s~~e~~~~aDiVi~~v 109 (355)
.+||+|||+|.+|..+|..|+..|. ++.++|+++++++.. ... .+....+.+ .+++||+||++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECC
Confidence 4699999999999999999998875 699999988765332 221 122234555 478999999975
No 216
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.46 E-value=0.00031 Score=64.54 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=52.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-C----CCCCC---CHHHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g----~~~~~---s~~e~~~~aDiVi~~v~~~ 112 (355)
..++.|||+|.+|++++..|.+.|. +|+++||++++++.+.+. + +.... +..+.+.++|+||-|+|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4679999999999999999999996 699999999999888752 1 11111 2234456789999998765
No 217
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.46 E-value=0.0008 Score=61.52 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=61.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHC-CCcE-EEEeCChhHH--HHHHhCCCCC-CCCHHHHhh--cCCEEEEeCCCchHHHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA-GYKM-AVHDVNCNVM--KMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~-G~~V-~v~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~aDiVi~~v~~~~~~~~v 118 (355)
+||||||+|+||..++..+.+. +.++ .++++++++. +...+.|+.. .++.+++++ +.|+|++++|+..+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 6899999999999998877754 4565 4678888753 3334466654 446777775 578899999987665543
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.. .++ .|+.++|.+...
T Consensus 82 ~~----al~-----aGk~VIdekPa~ 98 (285)
T TIGR03215 82 RL----LAE-----LGKIVIDLTPAA 98 (285)
T ss_pred HH----HHH-----cCCEEEECCccc
Confidence 32 222 345677665543
No 218
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.43 E-value=0.00085 Score=71.29 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-Cc-------------EEEEeCChhHHHHHHhC--CC---CC-CCCHHHHh---h
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--GV---PT-KETPFEVA---E 100 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~--g~---~~-~~s~~e~~---~ 100 (355)
.+.||+|||+|.||...+..|++.. .+ |++.|+++++++++.+. ++ .. +.+.+++. +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4678999999999999999998753 23 89999999998887662 32 22 44555554 5
Q ss_pred cCCEEEEeCCCchH
Q 018506 101 ASDVVITMLPSSSH 114 (355)
Q Consensus 101 ~aDiVi~~v~~~~~ 114 (355)
++|+||+|+|..-.
T Consensus 648 ~~DaVIsalP~~~H 661 (1042)
T PLN02819 648 QVDVVISLLPASCH 661 (1042)
T ss_pred CCCEEEECCCchhh
Confidence 79999999998643
No 219
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.41 E-value=0.00035 Score=64.80 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHHHHhC--------C-CCC--CCCHHHHhhcCCEEEEeCCCc
Q 018506 48 VGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G-VPT--KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~l~~~--------g-~~~--~~s~~e~~~~aDiVi~~v~~~ 112 (355)
|+|||+|.+|+++|..|+..| ++++++|+++++++..... . ... .++ .+.+++||+||++...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 689999999999999999988 6899999998876554321 0 111 233 56788999999997543
No 220
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.40 E-value=0.00046 Score=66.23 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=68.1
Q ss_pred ceEEEEcccHHhH-HHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC---C---------------C--CCHHH---Hhhc
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP---T---------------K--ETPFE---VAEA 101 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~---~---------------~--~s~~e---~~~~ 101 (355)
|||.++|+|+||+ .++..|.+.|++|+++|++++.++.+++.|.- . . .+.++ .+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 7899999999998 55888999999999999999999999876521 0 0 12222 3347
Q ss_pred CCEEEEeCCCchHHHHHhcCCCccccCCCC---CCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 102 SDVVITMLPSSSHVLDVYNGPNGLLQGGNS---VRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 102 aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~---~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
+|+|++++... .++.+...+.+.+..... .++.+|+.|-+ .+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN-~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACEN-MIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCC-hhhHHHHHHHHHH
Confidence 89999988643 444544443333322100 12224555544 4444455555543
No 221
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.38 E-value=0.00058 Score=64.61 Aligned_cols=90 Identities=23% Similarity=0.231 Sum_probs=57.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C----CC---CCC-CCHHHHhhcCCEEEEeCCCch
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PTK-ETPFEVAEASDVVITMLPSSS 113 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~----g~---~~~-~s~~e~~~~aDiVi~~v~~~~ 113 (355)
|||+|||+ |.+|..+++.|.+. ++++. +++++...-+.+.+ . +. ... .+.+++.+++|+||+|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 68999998 99999999999976 45766 55644322222221 0 11 111 145566568999999999863
Q ss_pred HHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 114 HVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 114 ~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..++... +.+ .|+.|||.|+..
T Consensus 81 -s~~~~~~---~~~-----~G~~VIDlS~~f 102 (346)
T TIGR01850 81 -SAELAPE---LLA-----AGVKVIDLSADF 102 (346)
T ss_pred -HHHHHHH---HHh-----CCCEEEeCChhh
Confidence 3443332 222 356899999875
No 222
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.34 E-value=0.0011 Score=62.69 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=48.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C------------------CCCCCCCHHHHhhcCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASD 103 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~------------------g~~~~~s~~e~~~~aD 103 (355)
|+||||+|+|.||..+++.+.+. +.++. +++++++....+.. . ++.+..+..++..++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 57999999999999999998864 45654 55767655544332 1 2233456667777788
Q ss_pred EEEEeCCCch
Q 018506 104 VVITMLPSSS 113 (355)
Q Consensus 104 iVi~~v~~~~ 113 (355)
+||.|.+...
T Consensus 81 VVIdaT~~~~ 90 (341)
T PRK04207 81 IVVDATPGGV 90 (341)
T ss_pred EEEECCCchh
Confidence 8888887653
No 223
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.32 E-value=0.00059 Score=59.35 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=31.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 77 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~ 77 (355)
...||+|+|+|.||+.++..|++.|+ +++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44789999999999999999999998 69999998
No 224
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.30 E-value=0.0012 Score=67.20 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=60.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHHHH-----hhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEV-----AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~e~-----~~~aDiVi~~v~~~~~~~ 116 (355)
.++|-|+|.|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. .+..+. ++++|.+++++++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999999988764331 122222 368999999999876554
Q ss_pred HHhc
Q 018506 117 DVYN 120 (355)
Q Consensus 117 ~vl~ 120 (355)
.+..
T Consensus 480 ~i~~ 483 (601)
T PRK03659 480 KIVE 483 (601)
T ss_pred HHHH
Confidence 4443
No 225
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.05 Score=49.86 Aligned_cols=284 Identities=14% Similarity=0.169 Sum_probs=154.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChhHHHHHHh---CC------------------C---CCCCCHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD---MG------------------V---PTKETPFEV 98 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~~~~~l~~---~g------------------~---~~~~s~~e~ 98 (355)
.|.++-++|+|....-+|.-+...| ..+-+++|-..+-+.+.+ .+ + ....+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4568999999999999999999887 468888875555444433 11 0 123567777
Q ss_pred hhcCCEEEEeCCCchHHHHHhcCCC-ccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch-hhhccCCCCCceEEeC-
Q 018506 99 AEASDVVITMLPSSSHVLDVYNGPN-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI-LKEKKDSWENPVMLDA- 175 (355)
Q Consensus 99 ~~~aDiVi~~v~~~~~~~~vl~~~~-~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~- 175 (355)
..+-+-+|+|||.+ +-.+|+.++. +.+.. .+..++|..+-++-..++.+........ +.....+..+..+++.
T Consensus 83 ~~dwqtlilav~aD-aY~dvlqqi~~e~L~~---vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 83 VGDWQTLILAVPAD-AYYDVLQQIPWEALPQ---VKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred hchhheEEEEeecH-HHHHHHhcCCHhHhcc---ccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeeccc
Confidence 78889999999986 6678888764 22321 2333344333333333444433332110 0000001112233332
Q ss_pred -CCCCChHHHhcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHH--------HHH-----H-------
Q 018506 176 -PVSGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK--------ICN-----N------- 231 (355)
Q Consensus 176 -pv~g~~~~~~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~K--------l~~-----n------- 231 (355)
|...-. .+.+. .++.| ++....+.+..++...|-.+..+..+-.|+..- +.. |
T Consensus 159 ~p~~alT-kavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~ 235 (431)
T COG4408 159 QPNRALT-KAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQ 235 (431)
T ss_pred CcchHHH-HHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcC
Confidence 111111 11122 24444 455677889999999987666554433333221 000 0
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc-------ccCCCCCCCcccC----
Q 018506 232 ----------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS-------SDSYNPVPGVMEG---- 284 (355)
Q Consensus 232 ----------------~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~~~~~~s~~-------~~~~~~~~~~~~~---- 284 (355)
.+..-+.....|.+.+..+.|+..-.++..+++---.... .+.+...+.....
T Consensus 236 ~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLf 315 (431)
T COG4408 236 RPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLF 315 (431)
T ss_pred CCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHH
Confidence 1122356678899999999999988888888753100000 0011110100000
Q ss_pred ----CCCCCCCCC--------Cc----------------chhhHH-HH---HHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 018506 285 ----VPASRNYGG--------GF----------------ASKLMA-KD---LNLALASAKEVGVDCPLTSQAQDIYAKLC 332 (355)
Q Consensus 285 ----~~~~~~~~~--------~~----------------~~~~~~-kd---~~~~~~~a~~~gv~~pi~~~~~~~~~~~~ 332 (355)
.++-+.|++ +| .+..+. .| +..+..+|..+++++|..+.....|+.+.
T Consensus 316 VRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~ 395 (431)
T COG4408 316 VRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQAL 395 (431)
T ss_pred HHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 000011110 01 112222 22 35668899999999999999999999998
Q ss_pred HC
Q 018506 333 EN 334 (355)
Q Consensus 333 ~~ 334 (355)
++
T Consensus 396 k~ 397 (431)
T COG4408 396 KA 397 (431)
T ss_pred HH
Confidence 85
No 226
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.26 E-value=0.0016 Score=65.85 Aligned_cols=74 Identities=14% Similarity=0.306 Sum_probs=57.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC---CCHHHH-----hhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEV-----AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~---~s~~e~-----~~~aDiVi~~v~~~~~~~ 116 (355)
.-.|-|+|+|.+|..+++.|.+.|++|++.|.|+++++.+++.+.... .+..+. ++++|.++++++++....
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 357999999999999999999999999999999999999988764321 112222 358999999998865433
Q ss_pred HH
Q 018506 117 DV 118 (355)
Q Consensus 117 ~v 118 (355)
.+
T Consensus 497 ~i 498 (558)
T PRK10669 497 EI 498 (558)
T ss_pred HH
Confidence 33
No 227
>PLN02602 lactate dehydrogenase
Probab=97.25 E-value=0.00073 Score=63.80 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=47.0
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC-----CCCCC--CCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~-----g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
+||+|||+|.+|+.+|..|...+. ++.++|+++++++.. ... ...+. .+. +.+++||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 699999999999999999998875 699999988765332 221 12222 233 4478999999995
No 228
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.0012 Score=60.10 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=60.1
Q ss_pred CCceEEEEcccHH-hHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~m-G~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+..+..
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~----- 217 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA----- 217 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-----
Confidence 4478999999999 999999999999999998642 34677888999999999997743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.++||.+...
T Consensus 218 -~~ik-----~gavVIDVGin~ 233 (285)
T PRK14189 218 -DMVK-----PGATVIDVGMNR 233 (285)
T ss_pred -HHcC-----CCCEEEEccccc
Confidence 2443 567999987654
No 229
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.24 E-value=0.00081 Score=62.60 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=47.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCc--EEEEeCCh--hHHHH----HHh----CC----CCCCCCHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYK--MAVHDVNC--NVMKM----FSD----MG----VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~--V~v~dr~~--~~~~~----l~~----~g----~~~~~s~~e~~~~aDiVi~~ 108 (355)
|||+|||+ |.+|..++..|+..|+. |+++||++ ++++. +.+ .+ +...++ .+.++++|+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 79999998 99999999999999874 99999954 43321 111 12 112334 4568899999999
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
+..
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 853
No 230
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.00054 Score=63.60 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=47.4
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHH----HHhC-------CCCCCCCHHHHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM-------GVPTKETPFEVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------g~~~~~s~~e~~~~aDiVi~~v 109 (355)
||+|||+|.+|..+|..|+..+. ++.++|+++++++. +... ......+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998875 79999998776532 2221 1122233457788999999986
No 231
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.22 E-value=0.0026 Score=49.91 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=51.6
Q ss_pred EEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHH----HhhcCCEEEEeCCCchH
Q 018506 48 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSH 114 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e----~~~~aDiVi~~v~~~~~ 114 (355)
|-|+|.|.+|..+++.|.+.+.+|++.++++++++.+.+.+..+. .+... -+++++.|+++.+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999977799999999999999998874321 12221 13678999999887643
No 232
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.22 E-value=0.00078 Score=57.31 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=49.4
Q ss_pred EEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----C--CCCHHHHhhcCCEEEEeCCC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~--~~s~~e~~~~aDiVi~~v~~ 111 (355)
|.|+|+ |.+|..+++.|.+.||+|++..|++++.+. ..+++ . .++..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689985 999999999999999999999999998876 32221 1 12345677899999999864
No 233
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.19 E-value=0.00082 Score=65.39 Aligned_cols=67 Identities=21% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
...+|.|||+|.+|.++|+.|.+.|++|+++|++++.........-....+.....+++|+||.+.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~g 68 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPG 68 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCC
Confidence 3468999999999999999999999999999988764432110000112233344467999998863
No 234
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.19 E-value=0.0017 Score=60.79 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=54.4
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHC-C-CcEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~-G-~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
...++|.|+|+ |.||+.+++.|.++ | .++++++|+++++..+.+. +.....+..+++.++|+||.+...+
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP 226 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC
Confidence 34578999998 89999999999864 4 5899999999888887653 2122236778888999999887654
No 235
>PRK05086 malate dehydrogenase; Provisional
Probab=97.18 E-value=0.0015 Score=60.93 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=46.5
Q ss_pred ceEEEEcc-cHHhHHHHHHHHH---CCCcEEEEeCChhHH---HHHHhCC--CCC----CCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMK---AGYKMAVHDVNCNVM---KMFSDMG--VPT----KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~---~G~~V~v~dr~~~~~---~~l~~~g--~~~----~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |.+|.+++..|.. .++++.++||++... -.+.+.+ ... .+++.+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 79999999 9999999998854 346899999875431 1232211 111 3455678889999999974
No 236
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.18 E-value=0.0012 Score=61.64 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=51.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-------CCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~aDiVi~~v~ 110 (355)
|||.|.| .|.+|+.+++.|.++||+|.+..|++++...+...++.. ..+..++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 6899998 699999999999999999999999987765554444322 2245567789999998754
No 237
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.16 E-value=0.0032 Score=55.88 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=50.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC---cEEEEeCC----hhHH-------HHHHh-CCC-CCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSD-MGV-PTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~---~V~v~dr~----~~~~-------~~l~~-~g~-~~~~s~~e~~~~aDiVi~ 107 (355)
+.+||.|+|+|.+|.+++..|.+.|. +|+++||+ .++. +.+.+ .+. ....++.++++++|++|-
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 44789999999999999999999996 49999998 4442 23332 111 111367688889999999
Q ss_pred eCCC
Q 018506 108 MLPS 111 (355)
Q Consensus 108 ~v~~ 111 (355)
+.+.
T Consensus 104 aT~~ 107 (226)
T cd05311 104 VSRP 107 (226)
T ss_pred CCCC
Confidence 9863
No 238
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.16 E-value=0.00067 Score=54.22 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHHhcCCCcccccCCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 018506 236 VSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 313 (355)
Q Consensus 236 ~~~~~~~Ea~~la~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 313 (355)
....++.|++.++++.|++ .+.+.+.+......... ...++..++..|++.+-++. .+++++.|++
T Consensus 39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~-~~~SM~~D~~~gr~tEid~i-----------~G~vv~~a~~ 106 (125)
T PF08546_consen 39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPD-NRSSMLQDIEAGRPTEIDYI-----------NGYVVRLAKK 106 (125)
T ss_dssp HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTT-T--HHHHHHHTTB--SHHHT-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-ccccHHHHHHHcccccHHHH-----------HHHHHHHHHH
Confidence 3556778999999999964 44344444322111000 00011122333333333332 3589999999
Q ss_pred hCCCChHHHHHHHHHHHH
Q 018506 314 VGVDCPLTSQAQDIYAKL 331 (355)
Q Consensus 314 ~gv~~pi~~~~~~~~~~~ 331 (355)
+|+++|.++.++++++..
T Consensus 107 ~gv~~P~~~~i~~lvk~~ 124 (125)
T PF08546_consen 107 HGVPTPVNETIYALVKAI 124 (125)
T ss_dssp TT---HHHHHHHHHHHHH
T ss_pred HCCCCcHHHHHHHHHHHh
Confidence 999999999999988753
No 239
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.12 E-value=0.018 Score=54.45 Aligned_cols=68 Identities=25% Similarity=0.405 Sum_probs=45.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHC--------C--CcE-EEEeCC----------hhHHHHHHhC-CC-C------CCCCH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKA--------G--YKM-AVHDVN----------CNVMKMFSDM-GV-P------TKETP 95 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~--------G--~~V-~v~dr~----------~~~~~~l~~~-g~-~------~~~s~ 95 (355)
.+||+|+|+|.||..+++.|.+. | .+| .++|++ .+++..+.+. +. . .+.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 47899999999999999999865 3 453 456753 3444444332 21 1 13477
Q ss_pred HHHhh--cCCEEEEeCCCc
Q 018506 96 FEVAE--ASDVVITMLPSS 112 (355)
Q Consensus 96 ~e~~~--~aDiVi~~v~~~ 112 (355)
.+++. +.|+|+.|+|+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHhhccCCCEEEECCcCc
Confidence 77773 689999999863
No 240
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.11 E-value=0.0024 Score=54.29 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=29.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~ 78 (355)
||.|||+|.+|+.++..|++.|.. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 689999999999999999999985 99999875
No 241
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.11 E-value=0.0011 Score=57.82 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
....||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 345789999999999999999999997 799999874
No 242
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.10 E-value=0.0011 Score=63.80 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=47.9
Q ss_pred EEEEcccHHhHHHHHHHHHCC-C-cEEEEeCChhHHHHHHhC--C-------CCCC--CCHHHHhhcCCEEEEeCCCc
Q 018506 48 VGFIGLGNMGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPTK--ETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~G-~-~V~v~dr~~~~~~~l~~~--g-------~~~~--~s~~e~~~~aDiVi~~v~~~ 112 (355)
|.|+|+|.+|+.+++.|++.+ + +|++.||+.++++++.+. + +.+. .++.++++++|+||.|++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999999987 4 799999999999888752 1 1111 13456778999999999754
No 243
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.09 E-value=0.002 Score=58.64 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=60.4
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+. +|.+++..|.+.|..|+++++. +.++.+.++++|+||.++..+..+..
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~----- 218 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG----- 218 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-----
Confidence 347899999999 9999999999999999999864 24678888999999999976644333
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 219 -~~vk-----~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWIK-----PGAIVIDVGINR 234 (285)
T ss_pred -HHcC-----CCcEEEEccccc
Confidence 2443 567999987654
No 244
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.09 E-value=0.0032 Score=52.53 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
...++|.|||-+. +|.+++..|.++|..|++++... .++.+.++.||+||.++..+..++.
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~---- 95 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA---- 95 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G----
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc----
Confidence 4567899999885 99999999999999999998643 4677888899999999987644322
Q ss_pred CCccccCCCCCCCeEEEEcCCCCH
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
.+++ ++.++||++....
T Consensus 96 --~~ik-----~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 --DWIK-----PGAVVIDVGINYV 112 (160)
T ss_dssp --GGS------TTEEEEE--CEEE
T ss_pred --cccc-----CCcEEEecCCccc
Confidence 2443 5689999987655
No 245
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.03 E-value=0.0014 Score=60.80 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=46.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhH--HHHHHhC----CCCCC---CCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM----GVPTK---ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~--~~~l~~~----g~~~~---~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|||+ |++|+.+|..|+..+. ++.++|++..+ +..+.+. .+... +++.+.++++|+||++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 79999999 9999999999998884 79999987111 1123321 11111 234678899999999963
No 246
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.02 E-value=0.00092 Score=56.48 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--------------------------CCHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--------------------------ETPFE 97 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--------------------------~s~~e 97 (355)
...||.|+|.|+.|..-+..+...|++|+++|.++++.+.+...+.... ....+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 3478999999999999999999999999999999998887776543211 12345
Q ss_pred HhhcCCEEEEeC--CCchHHHHHhcCCCccccCCCCCCCeEEEEcCC
Q 018506 98 VAEASDVVITML--PSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSST 142 (355)
Q Consensus 98 ~~~~aDiVi~~v--~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st 142 (355)
.++.+|+||.+. +... ...++.. ..++.++ ++.+|+|.|-
T Consensus 99 ~i~~~d~vI~~~~~~~~~-~P~lvt~--~~~~~m~--~gsvIvDis~ 140 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKR-APRLVTE--EMVKSMK--PGSVIVDISC 140 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS----SBEH--HHHHTSS--TTEEEEETTG
T ss_pred HHhhCcEEeeecccCCCC-CCEEEEh--HHhhccC--CCceEEEEEe
Confidence 667899999764 2221 1111111 1222222 5678998864
No 247
>PRK10206 putative oxidoreductase; Provisional
Probab=97.01 E-value=0.0023 Score=60.63 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=53.2
Q ss_pred CceEEEEcccHHhH-HHHHHHHH--CCCcE-EEEeCChhHHHHHHhCC-CCCCCCHHHHhh--cCCEEEEeCCCchHHHH
Q 018506 45 FESVGFIGLGNMGF-RMASNLMK--AGYKM-AVHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHVLD 117 (355)
Q Consensus 45 ~mkIgiIG~G~mG~-~ia~~L~~--~G~~V-~v~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~ 117 (355)
+.||||||+|.++. ..+..+.. .+.+| .++|+++++.+...+.+ ....++.+++++ +.|+|++|+|.....+-
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 46899999999775 33454533 24665 57899886653333333 567789999985 57999999998876665
Q ss_pred Hhc
Q 018506 118 VYN 120 (355)
Q Consensus 118 vl~ 120 (355)
+..
T Consensus 81 ~~~ 83 (344)
T PRK10206 81 AKR 83 (344)
T ss_pred HHH
Confidence 544
No 248
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.00 E-value=0.0028 Score=55.20 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCC-CCCCC--CHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE--TPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g-~~~~~--s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
...+|-|||.|.+|...++.|.+.|++|++++++.. .+..+.+.+ +.... -..+.+.++|+||.|+.++ .+...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN~~ 86 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVNEQ 86 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHHHH
Confidence 457899999999999999999999999999987643 334444332 21111 1122346788888887765 44443
No 249
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.97 E-value=0.0081 Score=59.19 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=49.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
.+||+|+|+|..|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 36899999999999999999999999999997652 2244666665442 22235457899999883
No 250
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0027 Score=58.16 Aligned_cols=76 Identities=12% Similarity=0.210 Sum_probs=56.8
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||.|. .|.+++..|.+.|.+|++++|.. .++.+.++++|+||.+++.+..+..
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~v~~----- 218 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPELIKK----- 218 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCcCCH-----
Confidence 446899999998 99999999999999999999732 2455666899999999965532111
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+++|.....
T Consensus 219 -~~lk-----~gavViDvg~n~ 234 (283)
T PRK14192 219 -DWIK-----QGAVVVDAGFHP 234 (283)
T ss_pred -HHcC-----CCCEEEEEEEee
Confidence 2332 457888886553
No 251
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.94 E-value=0.0015 Score=61.01 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCC--CcEEEEeCChhHH--HHHHhCC----CCCCCC---HHHHhhcCCEEEEeC
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPTKET---PFEVAEASDVVITML 109 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G--~~V~v~dr~~~~~--~~l~~~g----~~~~~s---~~e~~~~aDiVi~~v 109 (355)
-.+|.||+|||+ |.+|+.++..|+..+ +++.++|++.... ..+.+.. +...++ ..++++++|+||++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 357789999999 999999999999655 5899999843221 1222211 111212 267889999999996
Q ss_pred CC
Q 018506 110 PS 111 (355)
Q Consensus 110 ~~ 111 (355)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 33
No 252
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.93 E-value=0.0045 Score=61.06 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=52.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC--C---------------C----------HHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--E---------------T----------PFE 97 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~--~---------------s----------~~e 97 (355)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.....|.... + + ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999888777664430 0 1 234
Q ss_pred HhhcCCEEEEeC
Q 018506 98 VAEASDVVITML 109 (355)
Q Consensus 98 ~~~~aDiVi~~v 109 (355)
.++++|+||.++
T Consensus 244 ~~~~~DIVI~Ta 255 (511)
T TIGR00561 244 QAKEVDIIITTA 255 (511)
T ss_pred HhCCCCEEEECc
Confidence 467899999998
No 253
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.92 E-value=0.0031 Score=64.42 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=59.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCC----CCHHH----HhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~e----~~~~aDiVi~~v~~~~~~~ 116 (355)
..+|-|+|.|.+|..+++.|.+.|+++++.|.|+++++.+++.|..+. ++++- -++++|.+|+++++++.-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 468999999999999999999999999999999999999988765431 22221 1358999999998875544
Q ss_pred HHhc
Q 018506 117 DVYN 120 (355)
Q Consensus 117 ~vl~ 120 (355)
.+..
T Consensus 480 ~i~~ 483 (621)
T PRK03562 480 QLVE 483 (621)
T ss_pred HHHH
Confidence 4433
No 254
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.92 E-value=0.0023 Score=56.89 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=49.0
Q ss_pred EEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhCCCCCC-------CCHHHHhhcCCEEEEeCC
Q 018506 48 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 48 IgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~aDiVi~~v~ 110 (355)
|.|+|+ |.+|+.++..|.+.+|+|.+.-|++. ..+.+.+.|+... +++.++++++|.||++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecC
Confidence 789985 99999999999999999999999864 3566776665421 234456778888888877
No 255
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.90 E-value=0.0033 Score=60.17 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=59.7
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCC-------CCCCCCHH-HHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~aDiVi~~v~~~ 112 (355)
.+++||+|+|+ |..|..+.+.|.++ +++|+.+.++.+.-+.+.+.. .....+.+ +.++++|+||+|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35679999987 99999999999988 678888876544322222211 11111112 2247899999999975
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
...++... +. .+..|||.|+..
T Consensus 116 -~s~~i~~~----~~-----~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKA----LP-----KDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHH----Hh-----CCCEEEEcCchh
Confidence 44554433 21 346899999865
No 256
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.90 E-value=0.0031 Score=59.43 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=31.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|+.+|+ .++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999999999999999998 799999875
No 257
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.88 E-value=0.0088 Score=59.18 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH-HhCCCCCCC--CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
..+||.|+|+|..|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 44689999999999999999999999999999877665443 334655432 233445689999887
No 258
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0031 Score=57.62 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC----CC-CCCCCHHHH--hhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM----GV-PTKETPFEV--AEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~----g~-~~~~s~~e~--~~~aDiVi~~v~~~ 112 (355)
...++.|+|+|-.+.+++..|++.|. +|+++||+.++.+++.+. +. .......+. ..++|+||-++|-.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 34779999999999999999999995 799999999999888763 11 111122221 12599999999865
No 259
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.84 E-value=0.0065 Score=56.11 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHH---CCCcE-EEEeCChhHHHHHHhC-CC---CCCCCHHHHhhcC--CEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMK---AGYKM-AVHDVNCNVMKMFSDM-GV---PTKETPFEVAEAS--DVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~---~G~~V-~v~dr~~~~~~~l~~~-g~---~~~~s~~e~~~~a--DiVi~~v~~~ 112 (355)
....|+||+|+|.|+.-+++.|.. .+|.| .+.+|+.+++.++++. ++ ++..+.+|++++. |+|.+..|.+
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 345789999999999999999884 46775 4779999999998873 33 5678999999766 9999999999
Q ss_pred hHHHHHhc
Q 018506 113 SHVLDVYN 120 (355)
Q Consensus 113 ~~~~~vl~ 120 (355)
+..+-+..
T Consensus 84 qH~evv~l 91 (351)
T KOG2741|consen 84 QHYEVVML 91 (351)
T ss_pred cHHHHHHH
Confidence 88776654
No 260
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.83 E-value=0.0093 Score=56.20 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred CceEEEEcccHHhHHHHHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMK 66 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~ 66 (355)
.++|+|+|+|++|+.+++.|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 4799999999999999999887
No 261
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.81 E-value=0.0049 Score=56.83 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=48.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh---hHHHHHHh----CCC--CC--C--C---CHHHHhhcCCEEE
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSD----MGV--PT--K--E---TPFEVAEASDVVI 106 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~---~~~~~l~~----~g~--~~--~--~---s~~e~~~~aDiVi 106 (355)
+..++.|+|+|..|.+++..|++.|.. |++++|++ ++++++.+ .+. .. . + +..+.++.+|+||
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilI 204 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILV 204 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEE
Confidence 345789999999999999999999986 99999997 56655443 111 11 1 1 1223445789999
Q ss_pred EeCCCc
Q 018506 107 TMLPSS 112 (355)
Q Consensus 107 ~~v~~~ 112 (355)
-++|-.
T Consensus 205 NaTp~G 210 (289)
T PRK12548 205 NATLVG 210 (289)
T ss_pred EeCCCC
Confidence 888743
No 262
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.80 E-value=0.0026 Score=59.50 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=47.6
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCCh--hHHH----HHHhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVMK----MFSDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------g~~~~~s~~e~~~~aDi 104 (355)
-.||+|||+ |.+|..++..|...|. ++.++|+++ ++++ .+.+. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 368999998 9999999999998874 799999954 3222 22221 12233456678899999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++.
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 99985
No 263
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.79 E-value=0.014 Score=57.55 Aligned_cols=67 Identities=24% Similarity=0.436 Sum_probs=50.0
Q ss_pred CCCceEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCC-CCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v 109 (355)
.+.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.+.++|+||++-
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 34568999999999999 89999999999999997543 3445666666442 22334556899999873
No 264
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.77 E-value=0.0049 Score=60.76 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=49.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
.+||.|||+|..|.+.|..|.+.|++|.++|+.+.....+.+.|+.......+.+.++|+||.+
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 4689999999999999999999999999999876555556556665433222345689998865
No 265
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0064 Score=55.45 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+. +|.+++..|.+.|..|++++.. +.++.+.++++|+||.++..+..+..
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~----- 223 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKA----- 223 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCH-----
Confidence 347899999999 9999999999999999999842 23677888999999999876633222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||.+...
T Consensus 224 -~~vk-----~gavVIDvGin~ 239 (287)
T PRK14176 224 -DMVK-----EGAVIFDVGITK 239 (287)
T ss_pred -HHcC-----CCcEEEEecccc
Confidence 2443 567999998753
No 266
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.76 E-value=0.015 Score=57.81 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=51.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC--CHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~--s~~e~~~~aDiVi~~v 109 (355)
..+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 3689999999999999999999999999999887776666666664432 2345567899999884
No 267
>PRK05442 malate dehydrogenase; Provisional
Probab=96.75 E-value=0.0022 Score=60.07 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=47.2
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChh--HHH----HHHhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VMK----MFSDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~------g~~~~~s~~e~~~~aDi 104 (355)
.+||+|||+ |.+|..+|..|...|. ++.++|++++ +++ .+.+. ......+..+.+++||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 469999998 9999999999987664 7999998543 221 22221 22334566688899999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||++.
T Consensus 84 VVita 88 (326)
T PRK05442 84 ALLVG 88 (326)
T ss_pred EEEeC
Confidence 99985
No 268
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.74 E-value=0.012 Score=52.30 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=64.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeC----------ChhHHHHHHhC-C-------CCCCCCHHHH-hhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDM-G-------VPTKETPFEV-AEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr----------~~~~~~~l~~~-g-------~~~~~s~~e~-~~~a 102 (355)
.+.++|+|.|.|++|..+++.|.+.|..|+ +.|. +.+.+....+. | .... +.++. -.+|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~ 107 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC 107 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence 466899999999999999999999999987 6677 66666655442 2 1111 22222 2378
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHh
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVS 156 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~ 156 (355)
|+++-|.+.+....+.+..+ +-++|+..++... + .+-.+.+.
T Consensus 108 Dvlip~a~~~~i~~~~~~~l----------~a~~I~egAN~~~-t-~~a~~~L~ 149 (227)
T cd01076 108 DILIPAALENQITADNADRI----------KAKIIVEAANGPT-T-PEADEILH 149 (227)
T ss_pred cEEEecCccCccCHHHHhhc----------eeeEEEeCCCCCC-C-HHHHHHHH
Confidence 99999986653333333221 2247777766654 2 33444444
No 269
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.74 E-value=0.0023 Score=60.12 Aligned_cols=91 Identities=11% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEE--EeCChhHHHH---HHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAV--HDVNCNVMKM---FSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v--~dr~~~~~~~---l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
+|+||+|+|+ |..|..+.+.|.+++|++.- +-.+.+...+ +......+. .+..+ ++++|++|+++|.. ...
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~ 80 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSR 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHH
Confidence 4589999986 99999999999988885321 2222222211 111111111 12233 47899999999964 334
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..... ..+ .|..+||.|+..
T Consensus 81 ~~v~~---~~~-----~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEK---ARA-----AGCSVIDLSGAL 100 (336)
T ss_pred HHHHH---HHH-----CCCeEEECchhh
Confidence 43332 222 356899998755
No 270
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.74 E-value=0.0021 Score=59.24 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=46.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCChhHHHH----HHhC------CCCCCC-CHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDM------GVPTKE-TPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~~~~~~----l~~~------g~~~~~-s~~e~~~~aDiVi~~v 109 (355)
+||+|||+|.+|+++|..|...+ .++.++|+..++.+- +.+. ...... ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 68999999999999999998765 479999998554332 2221 112222 2256778999999997
No 271
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.73 E-value=0.0018 Score=56.92 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=48.1
Q ss_pred CCceEEEEcccHHhHHHHHHHH--HCCCcEE-EEeCChhHHHHHHh-CCCCCCCCHHHHhhc--CCEEEEeCCCch
Q 018506 44 QFESVGFIGLGNMGFRMASNLM--KAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSS 113 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~--~~G~~V~-v~dr~~~~~~~l~~-~g~~~~~s~~e~~~~--aDiVi~~v~~~~ 113 (355)
...+|+|||+|.+|..++..+. ..|+++. ++|+++++...... ..+...+++.+.++. .|+|++|+|...
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 3468999999999999998643 4577765 56888776543221 112233456666644 999999999763
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.72 E-value=0.009 Score=55.73 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=54.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCC-----CHHHHh-hcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~-----s~~e~~-~~aDiVi~~v~~~~~~~~v 118 (355)
-.+|+|+|+|.+|..-.+.....|.+|+.++|++++.+...+.|+...- +..+.+ +..|+|+.+++ +..+...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 3689999999999888888877999999999999999888887654221 122222 22788888877 5566554
Q ss_pred hc
Q 018506 119 YN 120 (355)
Q Consensus 119 l~ 120 (355)
+.
T Consensus 246 l~ 247 (339)
T COG1064 246 LK 247 (339)
T ss_pred HH
Confidence 43
No 273
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.72 E-value=0.006 Score=55.60 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-| .+|.+++..|.++|..|++++... .++.+.+++||+||.++..+.-+..
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~----- 216 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA----- 216 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-----
Confidence 34789999999 999999999999999999986432 2356788999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGi~~ 232 (285)
T PRK14191 217 -SMVK-----KGAVVVDIGINR 232 (285)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
No 274
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.71 E-value=0.003 Score=49.87 Aligned_cols=71 Identities=23% Similarity=0.479 Sum_probs=52.1
Q ss_pred ceEEEEc----ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 46 ESVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 46 mkIgiIG----~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
++|+||| -+.+|.-+.++|.++|++|+.++...+.+ .|.....++.|.-...|++++++|. +.+.+++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~ 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH
Confidence 4699999 79999999999999999999998755322 4667778888844789999999985 466777665
Q ss_pred C
Q 018506 122 P 122 (355)
Q Consensus 122 ~ 122 (355)
.
T Consensus 75 ~ 75 (116)
T PF13380_consen 75 A 75 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 275
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.71 E-value=0.0063 Score=49.80 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=31.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.++.+|+..|. +++++|.+.-....+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 68999999999999999999998 699998764433333
No 276
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.71 E-value=0.003 Score=59.12 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=47.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChhH--HH----HHHhC------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MK----MFSDM------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~------g~~~~~s~~e~~~~aDiV 105 (355)
+||+|||+ |.+|..+|..|+..|. ++.++|++++. ++ .+.+. ...+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 68999999 9999999999998775 79999985432 22 22211 122334566788999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++.
T Consensus 83 vita 86 (322)
T cd01338 83 LLVG 86 (322)
T ss_pred EEeC
Confidence 9995
No 277
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.70 E-value=0.066 Score=48.06 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 018506 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167 (355)
Q Consensus 88 g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~ 167 (355)
|++++++..|+++++|++|+-+|-......++..+-+.+ ++|.+|.+++|++|...-.+.+.+.+. ..|
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~l-----pEgAII~~tCTIpt~~ly~ilE~l~R~----Dvg-- 194 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDI-----PEGAIVTHACTIPTTKFAKIFEDLGRE----DLN-- 194 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhC-----CCCCEEeccccCChHHHHHHHHhhCcc----cCC--
Confidence 577888999999999999999998754455555433333 467899999999987655555554431 111
Q ss_pred CCceEEeCCCCCChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeC
Q 018506 168 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 218 (355)
Q Consensus 168 ~~~~~~~~pv~g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g 218 (355)
...|--+ ..+... ++..+.-| .++|..+++-++.+..++..+.+.
T Consensus 195 -VsS~HPa----aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 195 -VTSYHPG----CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred -eeccCCC----CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 0122222 222222 34333333 488999999999999998877543
No 278
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=96.68 E-value=0.0033 Score=57.28 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCcccccCCCCCCCcccCCCCCCCCCCCcchh
Q 018506 223 GAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 298 (355)
Q Consensus 223 a~~~Kl~~n~~~~~~~~~~~Ea~~la~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
|+.+||++|.+.+..+++++|+..+.+. .|++.+++.+++. .+...||..+..... +. ..+..++.-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 5789999999999999999999999984 7888888766665 566667654322111 10 01111111111
Q ss_pred hH-----HHH-HHHHHHHHHHhCCCChHHHHHH
Q 018506 299 LM-----AKD-LNLALASAKEVGVDCPLTSQAQ 325 (355)
Q Consensus 299 ~~-----~kd-~~~~~~~a~~~gv~~pi~~~~~ 325 (355)
.. .|- =....+.|-++|+|+|++.+++
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 10 011 1467889999999999988766
No 279
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.67 E-value=0.012 Score=51.74 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=49.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh----------hHHHHHHhCC-CCCCC-----CHHHH-hhcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC----------NVMKMFSDMG-VPTKE-----TPFEV-AEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~----------~~~~~l~~~g-~~~~~-----s~~e~-~~~aDi 104 (355)
...++|+|.|+|++|..+++.|.+.|.. |.+.|.+. +.++...+.+ +.... +.+++ ..+||+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV 100 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI 100 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence 4568999999999999999999999885 66778887 6666554432 22111 11222 237999
Q ss_pred EEEeCCCc
Q 018506 105 VITMLPSS 112 (355)
Q Consensus 105 Vi~~v~~~ 112 (355)
+|-|.+.+
T Consensus 101 lipaA~~~ 108 (217)
T cd05211 101 FAPCALGN 108 (217)
T ss_pred EeeccccC
Confidence 99998765
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.65 E-value=0.0082 Score=59.40 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=42.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~ 90 (355)
-.||.|+|+|.+|..-+..+...|.+|+++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4689999999999999999999999999999999999988888765
No 281
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.64 E-value=0.0015 Score=49.68 Aligned_cols=76 Identities=25% Similarity=0.332 Sum_probs=55.0
Q ss_pred CCceEEEEcccHHhHHHHHHHH-HCCCc-EEEEeCChhHHHHHHhCCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLM-KAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~-~~G~~-V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~vl 119 (355)
+..+|.|+|+|+.|.+++..+. ..|+. +.++|.++++..... .|+.+..+.+++.+. .|+.++++|.. .++++.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~-~a~~~~ 79 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAE-AAQEVA 79 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HH-HHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHH-HHHHHH
Confidence 3468999999999999985544 55776 567799988764322 356667688888776 99999999975 555555
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
..
T Consensus 80 ~~ 81 (96)
T PF02629_consen 80 DE 81 (96)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 282
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.64 E-value=0.0054 Score=56.29 Aligned_cols=68 Identities=26% Similarity=0.391 Sum_probs=51.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-----CC--CCCCCH---HHHhhcCCEEEEeCCCc
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKETP---FEVAEASDVVITMLPSS 112 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-----g~--~~~~s~---~e~~~~aDiVi~~v~~~ 112 (355)
..++.|+|+|..|++++..|++.|. +|+++||++++++.+.+. +. ....+. .+....+|+||-++|-.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 3679999999999999999999996 699999999999888652 11 011121 23456789999888743
No 283
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.64 E-value=0.009 Score=52.46 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|++.|.. ++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 446899999999999999999999975 99999873
No 284
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.62 E-value=0.0027 Score=59.38 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCCh--hHHHHH----HhC------CCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVMKMF----SDM------GVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~--~~~~~l----~~~------g~~~~~s~~e~~~~aDiV 105 (355)
.||+|||+ |.+|+.++..|...|. ++.++|+++ ++++-. .+. +.....+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 9999999999997652 599999987 543221 111 122335667888999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++-
T Consensus 81 VitA 84 (323)
T cd00704 81 ILVG 84 (323)
T ss_pred EEeC
Confidence 9985
No 285
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.022 Score=55.27 Aligned_cols=65 Identities=25% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH----HHHHHhCCCCCCC--CHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
..|||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ...+...++.... ...+....+|+||..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S 76 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS 76 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC
Confidence 3689999999999999999999999999999966655 1222234433221 222566789999988
No 286
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.61 E-value=0.089 Score=47.14 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCC
Q 018506 88 GVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSW 167 (355)
Q Consensus 88 g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~ 167 (355)
|+.++++..|+++++|++|+-+|-......++..+.+.+ +++.+|.+++|++|...-.+.+.+.+. ..|
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~i-----pEgAII~~tCTIpt~~ly~~le~l~R~----Dvg-- 196 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDI-----KEGAIVTHACTIPTTKFAKIFKDLGRD----DLN-- 196 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhC-----CCCCEEeccccCCHHHHHHHHHHhCcc----cCC--
Confidence 577788999999999999999998764455555433333 467899999999987655555544431 111
Q ss_pred CCceEEeCCCCCChHHHhcCceEEEec-CCHHHHHHHHHHHHHcCCCeEEeC
Q 018506 168 ENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 218 (355)
Q Consensus 168 ~~~~~~~~pv~g~~~~~~~g~~~~~~g-g~~~~~~~v~~ll~~~g~~~~~~g 218 (355)
...|--+.+-|.+ |+..+--| .++|..+++-++.+..++..+.+.
T Consensus 197 -IsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 197 -VTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred -eeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 0122222222322 33222112 488999999999999998877543
No 287
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.60 E-value=0.0038 Score=60.52 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=50.7
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-------CC--cEEEEeCChhHHHHH----HhC------CCCCCCCHHHHhhcCCE
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-------GY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDV 104 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-------G~--~V~v~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~aDi 104 (355)
.-||+|||+ |.+|..+|-.|+.. +. ++.++|++.++++-. .+. .+.+..+..+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 368999999 99999999999987 65 788999998876432 221 22333566788899999
Q ss_pred EEEeCC
Q 018506 105 VITMLP 110 (355)
Q Consensus 105 Vi~~v~ 110 (355)
||++.-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999963
No 288
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.60 E-value=0.0087 Score=58.73 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=52.6
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC--CCCC----CCCHHH----HhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPFE----VAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~--g~~~----~~s~~e----~~~~aDiVi~~v~~~ 112 (355)
..+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .++.+. -++++|.||++.+++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 346889999999999999999999999999999999999888764 2211 112221 134678887777654
No 289
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.56 E-value=0.0091 Score=56.28 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...||.|||+|.+|+.++..|+.+|. +++++|.+.-....+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~ 65 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQ 65 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcC
Confidence 45789999999999999999999998 7999998754444443
No 290
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.017 Score=53.64 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=87.8
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC--------CCcEE---EEeCChhHHHHHHhCC-CCCCCCH-----HHHh--hcCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA--------GYKMA---VHDVNCNVMKMFSDMG-VPTKETP-----FEVA--EASD 103 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~--------G~~V~---v~dr~~~~~~~l~~~g-~~~~~s~-----~e~~--~~aD 103 (355)
++.++|+++|+|.+|+.+++.|.++ |.++. +.+|+..+...+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 3568999999999999999999976 33433 4466655543111111 1222333 3433 3567
Q ss_pred EEEEeCCC-chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHH---HHHHHhhchhhhccCCCCCceEEeCCCCC
Q 018506 104 VVITMLPS-SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRN---ISAAVSNCILKEKKDSWENPVMLDAPVSG 179 (355)
Q Consensus 104 iVi~~v~~-~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~---l~~~~~~~~~~~~~g~~~~~~~~~~pv~g 179 (355)
+|+-+++. ....+. +......++ .++.|| |.++...+.. +.+... ..| ...+.++.+.|
T Consensus 81 vvve~~~~d~~~~~~-~~~~~~al~-----~GkhVV--TaNK~~lA~~~~el~~~A~------~~g---~~l~yEAtV~g 143 (333)
T COG0460 81 VVVELVGGDVEPAEP-ADLYLKALE-----NGKHVV--TANKALLALHYHELREAAE------KNG---VKLLYEATVGG 143 (333)
T ss_pred EEEecCcccCCchhh-HHHHHHHHH-----cCCeEE--CCCchHhHhhHHHHHHHHH------HhC---CeEEEEeeecc
Confidence 88888765 222221 111112333 344554 2233222222 333222 122 13456666665
Q ss_pred ChHHHhcCceEEEecCCHHHHHHHHHHHHHcCCCeEEeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018506 180 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 253 (355)
Q Consensus 180 ~~~~~~~g~~~~~~gg~~~~~~~v~~ll~~~g~~~~~~g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi 253 (355)
+.+ .++.+++.+. |.++..+-. .|+..+. ...+.... ..+.|++..|++.|+
T Consensus 144 GiP----------------iI~~lr~~l~--g~~I~~i~GIlNGT~NyI--lt~m~~~~--~~f~dal~eAq~lGy 197 (333)
T COG0460 144 GIP----------------IIKLLRELLA--GDEILSIRGILNGTTNYI--LTRMEEGG--LSFEDALAEAQELGY 197 (333)
T ss_pred Ccc----------------hHHHHHhhcc--cCceEEEEEEEeccHHHH--HHHHHccC--CCHHHHHHHHHHcCC
Confidence 532 4566777776 666654433 3443333 11111111 146788888888887
No 291
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.52 E-value=0.0044 Score=51.68 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC-CCCC-CCH-HHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g-~~~~-~s~-~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +... ... ++-++++|+||.++.++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~ 81 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH 81 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence 45789999999999999999999999999996 44444444322 1110 000 11235667777666543
No 292
>PLN00106 malate dehydrogenase
Probab=96.52 E-value=0.0041 Score=58.07 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=46.8
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhHH--HHHHhC----CCC---CCCCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNVM--KMFSDM----GVP---TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~~--~~l~~~----g~~---~~~s~~e~~~~aDiVi~~v~ 110 (355)
.||+|||+ |++|+.++..|+..+. ++.++|+++... ..+.+. .+. -.++..++++++|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 69999999 9999999999997665 799999976211 122221 111 23345788899999999863
No 293
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.49 E-value=0.0091 Score=54.47 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=49.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhC-CCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++.|+|+|..+.+++..|.+.|. +|+++||++++.+.+.+. +....... ....+|+||-|+|-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 479999999999999999999997 599999999999888763 22211111 124589999998743
No 294
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.49 E-value=0.0062 Score=57.73 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=56.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh----C-----------CCCC-CCCHHHHhhcCCEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD----M-----------GVPT-KETPFEVAEASDVV 105 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~----~-----------g~~~-~~s~~e~~~~aDiV 105 (355)
+++||+|+| .|.+|..+.+.|.+..+ ++..+.++++...+... . ...+ ..+++ .+.++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEE
Confidence 468999997 89999999999997654 77777555544322111 0 0111 12333 34789999
Q ss_pred EEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 106 ITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 106 i~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
|.|+|.. ....+... +.. .+..+||.|...
T Consensus 81 f~a~p~~-~s~~~~~~---~~~-----~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALPSD-VAGEVEEE---FAK-----AGKPVFSNASAH 110 (349)
T ss_pred EEeCChh-HHHHHHHH---HHH-----CCCEEEECCchh
Confidence 9999976 33333322 211 345678887643
No 295
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.0093 Score=58.56 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=48.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh-hHH----HHHHhCCCCC--CCCHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~-~~~----~~l~~~g~~~--~~s~~e~~~~aDiVi~~v 109 (355)
+.++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +++.+.++.. .....+....+|+||.+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 44789999999999999999999999999999975 333 3333345432 223334556899999885
No 296
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.46 E-value=0.0072 Score=56.21 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCC--cEEEEeCChhH--HHHHHhC--CCCCC----C-CHHHHhhcCCEEEEeCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM--GVPTK----E-TPFEVAEASDVVITMLP 110 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~--~V~v~dr~~~~--~~~l~~~--g~~~~----~-s~~e~~~~aDiVi~~v~ 110 (355)
||+|||+ |.+|..+|..|...++ ++.++|+++.. +..+.+. ..... + ++.+.++++|+||++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999998875 79999987621 1112221 01111 1 24678899999999963
No 297
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.013 Score=53.35 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=59.1
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+.-+..
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~~----- 216 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLITE----- 216 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccCH-----
Confidence 34689999998 89999999999999999988642 23567888999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~gavvIDvGin~ 232 (281)
T PRK14183 217 -DMVK-----EGAIVIDIGINR 232 (281)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
No 298
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.032 Score=54.71 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=47.9
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH----HHHHHhCCCCCC--CCHHHHhhc-CCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTK--ETPFEVAEA-SDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~----~~~l~~~g~~~~--~s~~e~~~~-aDiVi~~v 109 (355)
.++|.|+|.|.+|.++|+.|++.|++|+++|+++.. .+.+.+.|+... ....+.... .|+||...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 367999999999999999999999999999986532 344555565432 234444444 89888864
No 299
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.41 E-value=0.0038 Score=52.59 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=52.4
Q ss_pred CCCceEEEEcccHHhHHHHHH-HH-HCCCc-EEEEeCChhHHHHHHhC-CCCCCCCHHHHhh--cCCEEEEeCCCchHHH
Q 018506 43 CQFESVGFIGLGNMGFRMASN-LM-KAGYK-MAVHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHVL 116 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~-L~-~~G~~-V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~ 116 (355)
.++-++.+||+|++|.+++.. +. ++|.+ +.++|.+++++-..... .+.-.+++++-++ +.|+.|+|||.. ..+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~-~AQ 160 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE-HAQ 160 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH-HHH
Confidence 456789999999999999986 33 56777 56889999876544332 1222345555555 789999999975 444
Q ss_pred HHh
Q 018506 117 DVY 119 (355)
Q Consensus 117 ~vl 119 (355)
.+.
T Consensus 161 ~va 163 (211)
T COG2344 161 EVA 163 (211)
T ss_pred HHH
Confidence 443
No 300
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.031 Score=49.96 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCC-Cc-EEEEeCChhHH-----HHH---HhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAG-YK-MAVHDVNCNVM-----KMF---SDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G-~~-V~v~dr~~~~~-----~~l---~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
++|||+|.|+ |.||..+.+.+.+.. ++ +-.++|.++.. .++ ...++.+.+++.....++|++|=... |
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~-P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT-P 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC-c
Confidence 3689999999 999999999999875 45 44667765432 122 22456667777777889999986543 3
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 155 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~ 155 (355)
+.+...+.- .++. +-.+||-++.-+++..+.+.+..
T Consensus 80 ~~~~~~l~~---~~~~----~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 80 EATLENLEF---ALEH----GKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred hhhHHHHHH---HHHc----CCCeEEECCCCCHHHHHHHHHHH
Confidence 445454432 1221 11355555555566655565554
No 301
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.40 E-value=0.0063 Score=57.05 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=46.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC-------CcEEEEeCChh--HHHH----HHh------CCCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNCN--VMKM----FSD------MGVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G-------~~V~v~dr~~~--~~~~----l~~------~g~~~~~s~~e~~~~aDiV 105 (355)
.||+|+|+ |.+|+.++..|...+ .+|.++|+++. +++. +.+ ..+....+..++++++|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 68999999 999999999999854 58999999653 2221 111 0122245666888999999
Q ss_pred EEeC
Q 018506 106 ITML 109 (355)
Q Consensus 106 i~~v 109 (355)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9985
No 302
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.35 E-value=0.0062 Score=49.35 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=30.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHH
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVM 81 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~ 81 (355)
..||.|+|+|.+|+.++..|+..|. +++++|.+.=..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 3689999999999999999999998 699998764433
No 303
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.30 E-value=0.014 Score=52.97 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ ..|.+++..|...|..|++++++. .++.+.+++||+||.+++.+.-+..
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~----- 211 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP----- 211 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-----
Confidence 44789999999 999999999999999999998653 3577888999999999986533222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 212 -~~vk-----~GavVIDVgi~~ 227 (279)
T PRK14178 212 -DMVK-----PGATVIDVGINQ 227 (279)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2343 567999987653
No 304
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.29 E-value=0.015 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
++|+|.|+| .|.+|+.++..|++.||+|++..|++++....
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 468999999 59999999999999999999999998876544
No 305
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.26 E-value=0.0044 Score=52.80 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=44.4
Q ss_pred eEEEEcccHHhHHHHHH-HH-HC----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEEe
Q 018506 47 SVGFIGLGNMGFRMASN-LM-KA----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~-L~-~~----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~~ 108 (355)
||+|||+|..-.+.-.. +. .. +-++.++|+++++++.... .+ +..++|.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 79999999987774332 33 22 2379999999998764322 23 34478999999999999999
Q ss_pred CCC
Q 018506 109 LPS 111 (355)
Q Consensus 109 v~~ 111 (355)
+--
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 743
No 306
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.26 E-value=0.019 Score=57.42 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=34.2
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.+|.|.|+ |.+|..+++.|++.|++|.+++|+.++.+.+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45777765 99999999999999999999999998876654
No 307
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.21 E-value=0.013 Score=53.99 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=48.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh---hHHHHHHhC-C----CC-CCCCH------HHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~---~~~~~l~~~-g----~~-~~~s~------~e~~~~aDiVi~~ 108 (355)
..++.|||+|..+++++..|+..|. +|+++||++ ++++.+.+. + .. ...+. .+...++|+||-+
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 3579999999999999999999886 799999995 477776542 1 10 11122 2244578999988
Q ss_pred CCCc
Q 018506 109 LPSS 112 (355)
Q Consensus 109 v~~~ 112 (355)
+|-.
T Consensus 204 Tp~G 207 (288)
T PRK12749 204 TKVG 207 (288)
T ss_pred CCCC
Confidence 8753
No 308
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.20 E-value=0.013 Score=54.79 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEe
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
....+|.|||+|.||...+++|.++|. +|++.||+.+. ..+.+.. ....+....+|+||.|
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhh----hhhhhcccCCCEEEEc
Confidence 456899999999999999999999995 59999999753 1111100 0111333588999986
No 309
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.20 E-value=0.03 Score=55.02 Aligned_cols=62 Identities=27% Similarity=0.558 Sum_probs=46.7
Q ss_pred eEEEEcccHHhHH-HHHHHHHCCCcEEEEeCChh-HHHHHHhCCCCCCC-CHHHHhhcCCEEEEe
Q 018506 47 SVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM 108 (355)
Q Consensus 47 kIgiIG~G~mG~~-ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~ 108 (355)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC
Confidence 4889999999998 99999999999999997543 33456666665432 223445679999887
No 310
>PRK07236 hypothetical protein; Provisional
Probab=96.19 E-value=0.0075 Score=57.92 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=35.2
Q ss_pred CCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 41 PSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 41 ~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..|+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346678999999999999999999999999999998764
No 311
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.16 E-value=0.013 Score=55.30 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=45.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHh-CCC-----CCCC---CHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGV-----PTKE---TPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~-~g~-----~~~~---s~~e~~~~aDiVi~~ 108 (355)
||||.|.|+ |.+|+.++..|.++ ||+|.+++|+++....+.. .++ .... ...++++++|+||=+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 579999996 99999999999986 6999999998765544432 121 1111 223456789998844
No 312
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.16 E-value=0.02 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 44789999999999999999999997 6888886543
No 313
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.15 E-value=0.01 Score=56.72 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCC-----cE--EEE--eCChhHHHHHH----h------CCCCCCCCHHHHhhcCCEE
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGY-----KM--AVH--DVNCNVMKMFS----D------MGVPTKETPFEVAEASDVV 105 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~-----~V--~v~--dr~~~~~~~l~----~------~g~~~~~s~~e~~~~aDiV 105 (355)
-||+|||+ |++|..+|-.|...|. +| .++ |++.++++... + ..+.+..+..+.++++|+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 78999999 9999999999998764 23 344 88887764322 1 1233345666888999999
Q ss_pred EEeCC
Q 018506 106 ITMLP 110 (355)
Q Consensus 106 i~~v~ 110 (355)
|++.-
T Consensus 125 VitAG 129 (387)
T TIGR01757 125 LLIGA 129 (387)
T ss_pred EECCC
Confidence 99853
No 314
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.14 E-value=0.042 Score=44.81 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
..-++|.|+|- ...|.+++..|.+.|.+|++++++. .++++.+++||+|+.++..+..++
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~----- 86 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVP----- 86 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccC-----
Confidence 35578999965 5689999999999999999998642 267788899999999998763322
Q ss_pred CCccccCCCCCCCeEEEEcCCCC
Q 018506 122 PNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 122 ~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
..+++ +|.+++|.+...
T Consensus 87 -~~~ik-----pGa~Vidvg~~~ 103 (140)
T cd05212 87 -TEWIK-----PGATVINCSPTK 103 (140)
T ss_pred -HHHcC-----CCCEEEEcCCCc
Confidence 22554 567888887765
No 315
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.11 E-value=0.012 Score=54.61 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
++||+||| .|..|.-+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|...+ .+....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s-~~~~~~- 69 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------DA---AARRELLNAADVAILCLPDDAA-REAVAL- 69 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------cc---cCchhhhcCCCEEEECCCHHHH-HHHHHH-
Confidence 57999998 89999999999998753 33322222111 01 2334555789999999997633 333322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
+.+ .+..|||.|+..
T Consensus 70 --~~~-----~g~~VIDlSadf 84 (313)
T PRK11863 70 --IDN-----PATRVIDASTAH 84 (313)
T ss_pred --HHh-----CCCEEEECChhh
Confidence 221 456899998754
No 316
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.09 E-value=0.0074 Score=55.90 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=45.6
Q ss_pred EEcccHHhHHHHHHHHHCCC--cEEEEeCChhHHHHH----HhC------CCCCCCCHHHHhhcCCEEEEeCC
Q 018506 50 FIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~aDiVi~~v~ 110 (355)
|||+|.+|..+|..|+..+. ++.++|++.++++.. ... ......+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 69999999999999998875 699999987765432 221 12333455678899999999863
No 317
>PLN02427 UDP-apiose/xylose synthase
Probab=96.09 E-value=0.016 Score=55.69 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CCCCCceEEEEc-ccHHhHHHHHHHHHC-CCcEEEEeCChhHHHHHHhCC-------CC-----C--CCCHHHHhhcCCE
Q 018506 41 PSCQFESVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-----T--KETPFEVAEASDV 104 (355)
Q Consensus 41 ~~~~~mkIgiIG-~G~mG~~ia~~L~~~-G~~V~v~dr~~~~~~~l~~~g-------~~-----~--~~s~~e~~~~aDi 104 (355)
++.+.|||.|.| +|.+|+.+++.|.++ |++|.+++|++++...+...+ +. . ..+..++++++|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 445668999997 599999999999998 599999999877665543221 11 1 1223455667888
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
||=+.
T Consensus 90 ViHlA 94 (386)
T PLN02427 90 TINLA 94 (386)
T ss_pred EEEcc
Confidence 88654
No 318
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.09 E-value=0.012 Score=45.42 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCC-CCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~-~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|..=++.|.+.|-+|+++..+.+..+ ..+.. ....++.++++++||.+..++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~ 71 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDP 71 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCH
Confidence 457899999999999999999999999999998752222 11111 112234567888888888765
No 319
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.018 Score=60.61 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=59.1
Q ss_pred cccc-CCCCCCCCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCC
Q 018506 33 RRFF-SSQVPSCQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVP 90 (355)
Q Consensus 33 ~~~~-~~~~~~~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~ 90 (355)
..|. ++|+....-.+|+|||.|.-|.+-|..|.+.||.|++|.|+.. +++-+.+.|+.
T Consensus 1772 egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1772 EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred hcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCce
Confidence 4565 4566666778999999999999999999999999999998632 22333444543
Q ss_pred C--------CCCHHHHhhcCCEEEEeC
Q 018506 91 T--------KETPFEVAEASDVVITML 109 (355)
Q Consensus 91 ~--------~~s~~e~~~~aDiVi~~v 109 (355)
+ .-+++++-+.-|.|++|+
T Consensus 1852 f~tn~eigk~vs~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1852 FVTNTEIGKHVSLDELKKENDAIVLAT 1878 (2142)
T ss_pred EEeeccccccccHHHHhhccCeEEEEe
Confidence 3 246788888999999996
No 320
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.05 E-value=0.031 Score=48.50 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=31.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
+..||.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999997 599998764
No 321
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.02 E-value=0.033 Score=48.61 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HHHHHHhCC-CCC---CCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~~~l~~~g-~~~---~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ +.. .-. .+.+..+++||.++.++
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 346899999999999999999999999999987654 344454432 211 112 23456788888887664
No 322
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.01 E-value=0.017 Score=57.63 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=47.0
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHhC--CCCCC--CCHHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTK--ETPFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~~--g~~~~--~s~~e~~~~aDiVi~~ 108 (355)
..+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+. |+... ....+.++++|+||+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 45799999999999999999999999999996542 23445444 33321 1234556689999987
No 323
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.011 Score=55.10 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=47.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHH-HHHHhCCCCCC-C---CHHHHhhcCCEEEE
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTK-E---TPFEVAEASDVVIT 107 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~-~~l~~~g~~~~-~---s~~e~~~~aDiVi~ 107 (355)
+++|||||.|-.|..|+..-.+-|++|.+.|.+++.- ..+.+.-+... + .+.++++.||+|=.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4789999999999999999999999999999877653 33333322222 2 35677889998743
No 324
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.99 E-value=0.013 Score=56.82 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.6
Q ss_pred ceEEEEcccHH-hHHHHHHHHHC-----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNM-GFRMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~m-G~~ia~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||.|.. ...+...|.+. +.+|+++|.++++++.+.. .| +..+++.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999984 33455666644 3579999999988765322 23 4567899999999999999
Q ss_pred eCC
Q 018506 108 MLP 110 (355)
Q Consensus 108 ~v~ 110 (355)
..-
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 963
No 325
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.02 Score=56.75 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=47.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-----HHHHHHhCCCCCCC-CHHHHhhcCCEEEEeC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKE-TPFEVAEASDVVITML 109 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-----~~~~l~~~g~~~~~-s~~e~~~~aDiVi~~v 109 (355)
...+|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+.... +..+....+|+||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 346899999999999999999999999999996542 22345556654421 1111334699999885
No 326
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.97 E-value=0.023 Score=53.17 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=48.2
Q ss_pred EEEEcccHHhHHHHHHHHHC-CCcEE-EEeCChhHHHHHHh-C------------------CCCCCCCHHHHhhcCCEEE
Q 018506 48 VGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 48 IgiIG~G~mG~~ia~~L~~~-G~~V~-v~dr~~~~~~~l~~-~------------------g~~~~~s~~e~~~~aDiVi 106 (355)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+.. . ++.+..+++++...+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998754 45654 55777775444433 1 2333457888888999999
Q ss_pred EeCCCch
Q 018506 107 TMLPSSS 113 (355)
Q Consensus 107 ~~v~~~~ 113 (355)
.|.|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9988654
No 327
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.96 E-value=0.027 Score=58.14 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..++|+|||.|..|...|..|.+.||+|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45789999999999999999999999999999864
No 328
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.94 E-value=0.037 Score=50.48 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=58.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~----- 216 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKK----- 216 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 44789999865 57999999999999999998642 24578888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGin~ 232 (284)
T PRK14170 217 -DYIK-----PGAIVIDVGMDR 232 (284)
T ss_pred -HHcC-----CCCEEEEccCcc
Confidence 2443 567999998764
No 329
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.93 E-value=0.016 Score=54.29 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=44.5
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCC-------cEEEEeCChhH--HHH----HHh------CCCCCCCCHHHHhhcCCEEE
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDVVI 106 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~-------~V~v~dr~~~~--~~~----l~~------~g~~~~~s~~e~~~~aDiVi 106 (355)
||+|||+ |.+|+.++..|...+. ++.++|++++. ++. +.+ .+....++..+.++++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999986542 211 111 11222335567888999999
Q ss_pred EeC
Q 018506 107 TML 109 (355)
Q Consensus 107 ~~v 109 (355)
++.
T Consensus 81 itA 83 (324)
T TIGR01758 81 LVG 83 (324)
T ss_pred EcC
Confidence 985
No 330
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.92 E-value=0.04 Score=56.69 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=50.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~s 94 (355)
...||+|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+.. ..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 458899999999999999999999999999998753 234444455321 113
Q ss_pred HHHHhhcCCEEEEeCCC
Q 018506 95 PFEVAEASDVVITMLPS 111 (355)
Q Consensus 95 ~~e~~~~aDiVi~~v~~ 111 (355)
..++....|.||+++-.
T Consensus 389 ~~~l~~~~DaV~latGa 405 (639)
T PRK12809 389 FSDLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHHHhcCCEEEEeCCC
Confidence 44555678888888754
No 331
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.92 E-value=0.028 Score=52.05 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=50.7
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHH---HHhC------------CCCCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM---FSDM------------GVPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~---l~~~------------g~~~~~s~~e~~~~aDiVi~ 107 (355)
..++|.|-| .|.+|+.+...|+++||.|.+.-|+++.-+. +.+. .+....+..++++.||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 568899995 6999999999999999999999999886322 3331 12334577889999999995
Q ss_pred e
Q 018506 108 M 108 (355)
Q Consensus 108 ~ 108 (355)
+
T Consensus 85 ~ 85 (327)
T KOG1502|consen 85 T 85 (327)
T ss_pred e
Confidence 5
No 332
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.052 Score=53.27 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=46.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh--HHHHHHh--CCCCCCC--CHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSD--MGVPTKE--TPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~--~~~~l~~--~g~~~~~--s~~e~~~~aDiVi~~ 108 (355)
-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.+
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC
Confidence 4699999999999999999999999999997543 2234554 2554421 223455689998887
No 333
>PRK08328 hypothetical protein; Provisional
Probab=95.90 E-value=0.026 Score=50.23 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=35.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~ 86 (355)
...||.|||+|..|+.++..|+..|. +++++|.+.-....+..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~R 69 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNR 69 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhcc
Confidence 34689999999999999999999996 58999877655555543
No 334
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.88 E-value=0.028 Score=56.35 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCCC--CCCHHHH-hhcCCEEEEeCCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~aDiVi~~v~~ 111 (355)
...++-|+|+|.+|.+++..|++.|.+|++++|+.++++.+.+. +... ..+..+. ...+|+|+-++|-
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 34679999999999999999999999999999999998888652 2111 1111111 1346777766653
No 335
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.87 E-value=0.035 Score=50.18 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCceEEEEcccH-HhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G~-mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-++ +|.+|+..|..+++.|++++.. +.++.+.++++|++|.++-.+.-++
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~------ 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK------ 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc------
Confidence 447899999886 6999999999999999999863 2467788899999999998764433
Q ss_pred CccccCCCCCCCeEEEEcCCCCH
Q 018506 123 NGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
..+++ ++.++||......
T Consensus 215 ~d~vk-----~gavVIDVGinrv 232 (283)
T COG0190 215 ADMVK-----PGAVVIDVGINRV 232 (283)
T ss_pred ccccc-----CCCEEEecCCccc
Confidence 22443 4579999877643
No 336
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.85 E-value=0.049 Score=46.68 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=61.6
Q ss_pred CCCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC---CCCCC--CC----HHHHhhcCCEEEEeCCCc
Q 018506 43 CQFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTK--ET----PFEVAEASDVVITMLPSS 112 (355)
Q Consensus 43 ~~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~---g~~~~--~s----~~e~~~~aDiVi~~v~~~ 112 (355)
..-.+|.|||-+ .+|.+++..|.+.|..|+++|.+.-.. +... +-..+ .+ +.+.+++|||||.+++.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 455789999866 579999999999999999998643222 1100 00111 12 678889999999999987
Q ss_pred hH-HHHHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 113 SH-VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 113 ~~-~~~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.. +.. .+++ +|.++||.+...
T Consensus 138 ~~~i~~------d~ik-----~GavVIDVGi~~ 159 (197)
T cd01079 138 NYKVPT------ELLK-----DGAICINFASIK 159 (197)
T ss_pred CCccCH------HHcC-----CCcEEEEcCCCc
Confidence 43 222 2443 567999998764
No 337
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.85 E-value=0.011 Score=57.13 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=31.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+|.|||.|.+|.++|..|++.|++|+++++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 338
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.85 E-value=0.019 Score=45.22 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred cccHHhHHHHHHHHHC----CCcE-EEEeCC--hhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeCCCchHHHHHhcCC
Q 018506 52 GLGNMGFRMASNLMKA----GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 52 G~G~mG~~ia~~L~~~----G~~V-~v~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
|+|.||+.++..|.+. +.+| .+++|+ .+........+.....+++++++ ..|+||-|.+. +.+.+.+..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~~~- 78 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYYEK- 78 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHHHH-
Confidence 8999999999999987 4554 567887 11111111234567788888887 89999999654 466655433
Q ss_pred CccccCCCCCCCeEEEEcCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~ 143 (355)
+++ .|.-||..+..
T Consensus 79 --~L~-----~G~~VVt~nk~ 92 (117)
T PF03447_consen 79 --ALE-----RGKHVVTANKG 92 (117)
T ss_dssp --HHH-----TTCEEEES-HH
T ss_pred --HHH-----CCCeEEEECHH
Confidence 444 34456555443
No 339
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.84 E-value=0.041 Score=50.54 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~----- 226 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKG----- 226 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 45789999866 57999999999999999999753 34678889999999999987633222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 227 -~~vk-----~gavVIDvGin~ 242 (299)
T PLN02516 227 -DWIK-----PGAAVIDVGTNA 242 (299)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999998764
No 340
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.83 E-value=0.015 Score=54.70 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=54.8
Q ss_pred CceEEEEcc-cHHhHHHHHHHHH-CCCc---EEEEe--CChhHHHHHHhCCCCCC-CCHHHHhhcCCEEEEeCCCchHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMK-AGYK---MAVHD--VNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHVL 116 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~-~G~~---V~v~d--r~~~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~v~~~~~~~ 116 (355)
.+||||||+ |..|..|.+.|.+ ..++ +..+. ++..+.-.+......+. .+..+ ..+.|++|+|+|.. ..+
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSR 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHH
Confidence 479999987 9999999999995 6667 44443 22222212221112211 13333 47899999999875 444
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+... ..+ .|..|||.|+..
T Consensus 83 ~~~~~---~~~-----~G~~VID~Ss~f 102 (347)
T PRK06728 83 QFVNQ---AVS-----SGAIVIDNTSEY 102 (347)
T ss_pred HHHHH---HHH-----CCCEEEECchhh
Confidence 44332 111 456899998754
No 341
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.80 E-value=0.014 Score=54.40 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=45.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----C--CCCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~--~~s~~e~~~~aDiVi~~v 109 (355)
|+|.|.| .|.+|..++..|.+.|++|++.+|+++....+...++. . ..++.++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 59999999999999999999999987765433322221 1 123445566778877665
No 342
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.80 E-value=0.017 Score=54.47 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCc---EEEE--eCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLD 117 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~---V~v~--dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~ 117 (355)
..+||+||| .|..|..+.+.|.+.+|+ +... .|+..+.-........+.....+.++++|+||+|+|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 458999995 699999999999998884 3222 33433322111111112111224457899999999976 3344
Q ss_pred HhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 118 VYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 118 vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.... ... .|..|||.|+..
T Consensus 85 ~~~~---~~~-----~g~~VIDlS~~f 103 (344)
T PLN02383 85 FGPI---AVD-----KGAVVVDNSSAF 103 (344)
T ss_pred HHHH---HHh-----CCCEEEECCchh
Confidence 3332 111 456899998754
No 343
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.11 Score=48.14 Aligned_cols=186 Identities=18% Similarity=0.282 Sum_probs=99.5
Q ss_pred CCceEEEEcccHHhHHHHHHHHH-CCCcEE-EEeCChhHHHHHHh-CCCC--------CCCCHHHHhhcCCEEEEeCCCc
Q 018506 44 QFESVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVP--------TKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~-~G~~V~-v~dr~~~~~~~l~~-~g~~--------~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
+.-|||+||+|.||+.|+...+. .|.+|. +.||+.+.+.+..+ .+.. -.+...++++.-.+.+. +
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT---~- 91 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT---D- 91 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe---c-
Confidence 44789999999999999998885 578865 55899888776654 2221 12445566655555442 1
Q ss_pred hHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEe--CCCCCChHHH----hc
Q 018506 113 SHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD--APVSGGVLAA----EA 186 (355)
Q Consensus 113 ~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~pv~g~~~~~----~~ 186 (355)
+.+.++.. +.+ .+|||.+..+.--.+.-.+.+.. .. ...+++ +-++-++.-. ..
T Consensus 92 -D~~~i~~~--~~I--------dvIIdATG~p~vGA~~~l~Ai~h-----~K----HlVMmNVEaDvtIGp~Lk~~Ad~~ 151 (438)
T COG4091 92 -DAELIIAN--DLI--------DVIIDATGVPEVGAKIALEAILH-----GK----HLVMMNVEADVTIGPILKQQADAA 151 (438)
T ss_pred -chhhhhcC--Ccc--------eEEEEcCCCcchhhHhHHHHHhc-----CC----eEEEEEeeeceeecHHHHHHHhhc
Confidence 12222211 111 26777766543322222222211 00 133333 3333333322 22
Q ss_pred CceEEEecCC-HHHHHHHHHHHHHcCCCeEEeCC-------------c------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 018506 187 GTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGG-------------A------GNGAAAKICNNLTMAVSMLGVSEALT 246 (355)
Q Consensus 187 g~~~~~~gg~-~~~~~~v~~ll~~~g~~~~~~g~-------------~------g~a~~~Kl~~n~~~~~~~~~~~Ea~~ 246 (355)
|-..-+..|| +...-.+-++.+++|..++..|. . ...+..||...+.=..- .+.|+..
T Consensus 152 GviyS~~~GDeP~~~mEL~efa~a~G~evv~aGKGkNnpl~~~a~Pdt~~eeA~r~~~n~~Ml~sF~DGsK--tmvEMaa 229 (438)
T COG4091 152 GVIYSGGAGDEPSSCMELYEFASALGFEVVSAGKGKNNPLNIDANPDTYEEEAKRRNMNPRMLVSFQDGSK--TMVEMAA 229 (438)
T ss_pred CeEEeccCCCCcHHHHHHHHHHHhcCCeEEeccCCcCCCCccCCCCchHHHHHhhcCCChHHhhhhhcccH--HHHHHHH
Confidence 3322233344 55677788889999977764441 0 11122334433332232 3679999
Q ss_pred HHHHcCCCH
Q 018506 247 LGQSLGISA 255 (355)
Q Consensus 247 la~~~Gi~~ 255 (355)
++.+.|+.+
T Consensus 230 vANaTGl~p 238 (438)
T COG4091 230 VANATGLVP 238 (438)
T ss_pred HhcccCCCC
Confidence 999988743
No 344
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.77 E-value=0.029 Score=50.40 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=33.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.-....+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 72 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL 72 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh
Confidence 44789999999999999999999996 688888764433333
No 345
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.77 E-value=0.026 Score=50.55 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=34.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...||.|+|+|.+|+.++..|+..|. +++++|.+.-....+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 34689999999999999999999996 5888887655444443
No 346
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.76 E-value=0.02 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
||.|||.|..|.-+|..|.+.|.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 6899999999999999999999999999987653
No 347
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.76 E-value=0.018 Score=55.08 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=44.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCC-----CCC--CCHHHHhhcCCEEEEeC
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV-----PTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----~~~--~s~~e~~~~aDiVi~~v 109 (355)
...|||.|.|. |.+|+.+++.|.+.||+|++.+|............. ... .+...++.++|+||-+.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 35689999986 999999999999999999999985432110000011 111 12233456789888775
No 348
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.74 E-value=0.018 Score=52.74 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=45.0
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCC----CCCCCCHHHHh------hc-CCEEEEeCCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG----VPTKETPFEVA------EA-SDVVITMLPS 111 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-aDiVi~~v~~ 111 (355)
+|.|+|+ |.+|+.+++.|.+.||+|.+..|++++.....-.. ..-.+++.+++ +. +|.|+++.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788976 99999999999999999999999987643211011 11122344444 34 8989888764
No 349
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.72 E-value=0.022 Score=55.46 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=47.7
Q ss_pred ceEEEEcccHHhH-HHHHHHHHC-----CCcEEEEeCChhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEEE
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi~ 107 (355)
|||+|||+|..=+ .+...|... +-+|+++|.++++++.+.. .| +..+++..+++++||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 7999999998622 344555543 3579999999988765322 22 4567899999999999999
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 86
No 350
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.71 E-value=0.017 Score=54.36 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=56.1
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcE---EEEeCChhHHHHHHhCC--CCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V---~v~dr~~~~~~~l~~~g--~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
+|||+|+| .|..|..+.+.|.+.+|++ ....+..+.-+.+.-.+ ....+...+.++++|+||+|+|.. ..+++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence 47999995 6999999999999988864 55544433322222111 122111123346899999999876 33443
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
... +++ .|..|||.|+..
T Consensus 80 ~~~---~~~-----~G~~VIDlS~~~ 97 (334)
T PRK14874 80 APK---AAA-----AGAVVIDNSSAF 97 (334)
T ss_pred HHH---HHh-----CCCEEEECCchh
Confidence 332 222 345899988753
No 351
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.69 E-value=0.035 Score=53.25 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|++.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 34689999999999999999999997 699999874
No 352
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.68 E-value=0.061 Score=52.51 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=45.2
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HH----HHH-hCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MK----MFS-DMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~----~l~-~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+... .+ .+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECC
Confidence 5899999999999999999999999999975442 11 122 2455432 23 44567899998873
No 353
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.048 Score=48.36 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 445677886 599999999999999999999999987765543
No 354
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.038 Score=51.34 Aligned_cols=94 Identities=24% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-----CCC---CC-CCCHHHH-hhcCCEEEEeCCC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-----MGV---PT-KETPFEV-AEASDVVITMLPS 111 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-----~g~---~~-~~s~~e~-~~~aDiVi~~v~~ 111 (355)
.|+||+||| .|.-|.-|.+.|+.+.+ ++..+..+..+=+.+.+ .|. .. ..+++++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 368999995 69999999999997643 55555433211122222 111 11 1233333 3459999999998
Q ss_pred chHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHH
Q 018506 112 SSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 146 (355)
Q Consensus 112 ~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~ 146 (355)
..+.+-+ .. ++. ++..|||+|+-.--
T Consensus 81 g~s~~~v-~~---l~~-----~g~~VIDLSadfR~ 106 (349)
T COG0002 81 GVSAELV-PE---LLE-----AGCKVIDLSADFRL 106 (349)
T ss_pred hhHHHHH-HH---HHh-----CCCeEEECCccccc
Confidence 7544433 22 332 23469999997633
No 355
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.074 Score=49.03 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.4
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++|-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356777765 999999999999999999999999887766543
No 356
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.64 E-value=0.025 Score=54.84 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=47.4
Q ss_pred ceEEEEcccHHhH-HHHHHHHHC-----CCcEEEEeCC-hhHHHHHHh--------CC----CCCCCCHHHHhhcCCEEE
Q 018506 46 ESVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVN-CNVMKMFSD--------MG----VPTKETPFEVAEASDVVI 106 (355)
Q Consensus 46 mkIgiIG~G~mG~-~ia~~L~~~-----G~~V~v~dr~-~~~~~~l~~--------~g----~~~~~s~~e~~~~aDiVi 106 (355)
|||+|||+|..-+ .+...|+.. +-+|+++|++ +++++.... .+ +..+++.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 7999999999755 345555542 2579999999 788654221 22 345789999999999999
Q ss_pred EeC
Q 018506 107 TML 109 (355)
Q Consensus 107 ~~v 109 (355)
++.
T Consensus 81 ~~~ 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
Confidence 996
No 357
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.63 E-value=0.012 Score=55.53 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred eEEEEc-ccHHhHHHHHHHHHCCCcE---EEEeCChhHHHHHHhCCC--CCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 47 SVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 47 kIgiIG-~G~mG~~ia~~L~~~G~~V---~v~dr~~~~~~~l~~~g~--~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
||+||| .|..|..+.+.|.+++|++ .++.+..+.-+.+...+. ...+-..+.++++|+||+|+|.. .......
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a~ 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFAP 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHHH
Confidence 689998 8999999999999988873 344444332222222221 11111123457899999999976 3334332
Q ss_pred CCCccccCCCCCCCeEEEEcCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
. +++ .|..|||.|+.
T Consensus 80 ~---~~~-----~G~~VID~ss~ 94 (339)
T TIGR01296 80 K---AAK-----CGAIVIDNTSA 94 (339)
T ss_pred H---HHH-----CCCEEEECCHH
Confidence 2 222 34578888864
No 358
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.62 E-value=0.018 Score=51.76 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=46.1
Q ss_pred cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh-cCCEEEEeCC
Q 018506 52 GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLP 110 (355)
Q Consensus 52 G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~-~aDiVi~~v~ 110 (355)
|.|.+|+++...|.+.||+|++..|++.+.+......+...+..++... .+|+||--.-
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG 65 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAG 65 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCC
Confidence 8899999999999999999999999998877655444444445555555 6998886543
No 359
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.013 Score=53.40 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=53.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC-CCC------CCCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~------~~~s~~e~~~~aDiVi~~v 109 (355)
.-||.|||.|.+|+.=|+...--|-+|++.|+|.+++..+-+. +.+ -....++.+..+|+||-+|
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 3689999999999999999999999999999999998887662 222 1234567788999999875
No 360
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.61 E-value=0.015 Score=54.63 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCc---EEEEeC--ChhHHHHHHhCCCCCCCCHHHH-hhcCCEEEEeCCCchHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYK---MAVHDV--NCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHVL 116 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~---V~v~dr--~~~~~~~l~~~g~~~~~s~~e~-~~~aDiVi~~v~~~~~~~ 116 (355)
..+||+|||+ |..|.-+.+.|.+..|+ +..+.. +..+.-.+......+. ++++. ..++|++|+|+|.. ...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHH
Confidence 5689999987 99999999999996553 444432 2222111211112222 33333 26899999999875 333
Q ss_pred HHhcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 117 DVYNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 117 ~vl~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+... ..+ .|..|||.|+..
T Consensus 81 ~~~~~---~~~-----~g~~VIDlS~~f 100 (336)
T PRK08040 81 AYAEE---ATN-----AGCLVIDSSGLF 100 (336)
T ss_pred HHHHH---HHH-----CCCEEEECChHh
Confidence 43332 221 456899998644
No 361
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.59 E-value=0.041 Score=56.67 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH---------------------HHHHHhCCCCCC--------C
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV---------------------MKMFSDMGVPTK--------E 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~---------------------~~~l~~~g~~~~--------~ 93 (355)
...++|.|||.|..|...|..|++.||+|+++++++.. .+.+.+.|+... -
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 34578999999999999999999999999999976431 334444454321 1
Q ss_pred CHHHHhhcCCEEEEeCCC
Q 018506 94 TPFEVAEASDVVITMLPS 111 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~ 111 (355)
+.++.....|.||+++-.
T Consensus 271 ~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CHHHHHhhcCEEEEEcCC
Confidence 344444569999998744
No 362
>PRK06753 hypothetical protein; Provisional
Probab=95.59 E-value=0.016 Score=55.24 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=32.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|..|.++|..|+++|++|++++++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998865
No 363
>PRK08223 hypothetical protein; Validated
Probab=95.58 E-value=0.04 Score=50.40 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=33.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~ 85 (355)
...+|.|||+|.+|+.++..|+.+|. +++++|.+.-....++
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLn 68 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFN 68 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccc
Confidence 34689999999999999999999996 5888887654444443
No 364
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.57 E-value=0.072 Score=52.29 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=56.4
Q ss_pred ceEEEEcc----cHHhHHHHHHHHHCCC--cEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHh
Q 018506 46 ESVGFIGL----GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 46 mkIgiIG~----G~mG~~ia~~L~~~G~--~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl 119 (355)
.+|+|||+ |++|..+.++|.+.|| +|+.+|...+. -.|.....++.|+-...|++++++|.. .+.+++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l 81 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVV 81 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHH-HHHHHH
Confidence 67999999 8999999999999998 56666654332 146788889999888899999999964 666666
Q ss_pred cCC
Q 018506 120 NGP 122 (355)
Q Consensus 120 ~~~ 122 (355)
++.
T Consensus 82 ~e~ 84 (447)
T TIGR02717 82 EEC 84 (447)
T ss_pred HHH
Confidence 553
No 365
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.57 E-value=0.16 Score=52.52 Aligned_cols=117 Identities=10% Similarity=0.166 Sum_probs=81.9
Q ss_pred EEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHH
Q 018506 105 VITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAA 184 (355)
Q Consensus 105 Vi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~ 184 (355)
||+|+|- ..+.+++.++.+.++ ++.+|.|.++++....+.+.+.++. ... ..+-.+|+.|....-
T Consensus 1 vila~Pv-~~~~~~~~~~~~~~~-----~~~~vtDv~SvK~~i~~~~~~~l~~-----~~~----~fvg~HPMaG~e~~G 65 (673)
T PRK11861 1 VLLAAPV-AQTGPLLARIAPFLD-----ASTIVTDAGSTKSDVVAAARAALGA-----RIG----QFVPGHPIAGRESSG 65 (673)
T ss_pred CEEEcCH-HHHHHHHHHHhhhCC-----CCcEEEecCcccHHHHHHHHHhccc-----cCC----eEEecCCcCcCcchh
Confidence 6899985 577888877666553 5679999999997776666655431 000 133446777654332
Q ss_pred --------hcCceEEEec---CCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHH
Q 018506 185 --------EAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 236 (355)
Q Consensus 185 --------~~g~~~~~~g---g~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~ 236 (355)
..|...+++- .++++++.++++++.+|.+++.+.+-.....+-++..+....
T Consensus 66 ~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~ 128 (673)
T PRK11861 66 VDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVL 128 (673)
T ss_pred hhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHH
Confidence 4677677773 367889999999999999999999877887776666664443
No 366
>PRK05868 hypothetical protein; Validated
Probab=95.56 E-value=0.017 Score=55.32 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=32.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 57899999999999999999999999999998765
No 367
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.55 E-value=0.032 Score=53.78 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
...|||.|+|. |.+|+.+++.|.++||+|++++|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 34678999975 999999999999999999999998754
No 368
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.52 E-value=0.016 Score=44.81 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHHHH---hCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH-hcCCCccccCCCC
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHVLDV-YNGPNGLLQGGNS 131 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~---~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v-l~~~~~~l~~~~~ 131 (355)
-+..++..|.+.|.+|.+||..-....... ..++...+++.++.+.+|+||++++-+ ..+.+ ...+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~----- 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLM----- 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHS-----
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhc-----
Confidence 456789999999999999998766554443 246777889999999999999999754 33221 11111112
Q ss_pred CCCeEEEEcCCC
Q 018506 132 VRPQLLIDSSTI 143 (355)
Q Consensus 132 ~~~~ivi~~st~ 143 (355)
.++.+|+|+-+.
T Consensus 92 ~~~~~iiD~~~~ 103 (106)
T PF03720_consen 92 RKPPVIIDGRNI 103 (106)
T ss_dssp CSSEEEEESSST
T ss_pred CCCCEEEECccc
Confidence 145689998664
No 369
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.52 E-value=0.063 Score=53.03 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.1
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+..+|.|||.|..|...|..|.+.|++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 44689999999999999999999999999998764
No 370
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.18 Score=49.37 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=47.2
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH--HHHHHh--CCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSD--MGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~--~~~l~~--~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+ .|+... ....+...++|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECC
Confidence 468999999999999999999999999999976542 344443 254331 11233446899999884
No 371
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.026 Score=54.29 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred CCCceEEEEcccHHhHHHHH-HHHHC-----CCcEEEEeCChhHHHHH-------Hh-CC----CCCCCCHHHHhhcCCE
Q 018506 43 CQFESVGFIGLGNMGFRMAS-NLMKA-----GYKMAVHDVNCNVMKMF-------SD-MG----VPTKETPFEVAEASDV 104 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~-~L~~~-----G~~V~v~dr~~~~~~~l-------~~-~g----~~~~~s~~e~~~~aDi 104 (355)
++++||+|||.|..+++.-. .+... +.++.++|.++++.+.. .+ .| +..++|.+++++++|+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 35689999999998876432 22222 45899999999987632 22 23 3457899999999999
Q ss_pred EEEeC
Q 018506 105 VITML 109 (355)
Q Consensus 105 Vi~~v 109 (355)
|+.++
T Consensus 81 Vi~~~ 85 (442)
T COG1486 81 VITQI 85 (442)
T ss_pred EEEEE
Confidence 99996
No 372
>PRK06182 short chain dehydrogenase; Validated
Probab=95.51 E-value=0.053 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.7
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++|-|.| .|.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 45688887 5999999999999999999999999888766543
No 373
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.48 E-value=0.018 Score=55.71 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|.+|.+.|..|+++|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 6899999999999999999999999999999754
No 374
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.46 E-value=0.023 Score=40.12 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=27.0
Q ss_pred EEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 50 FIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 50 iIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|||.|.-|...|..|.++|++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998753
No 375
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.43 E-value=0.048 Score=55.22 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh---------------------hHHHHHHhCCCCCC------C--
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC---------------------NVMKMFSDMGVPTK------E-- 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~---------------------~~~~~l~~~g~~~~------~-- 93 (355)
....+|.|||+|..|...|..|.+.|++|+++++.+ .+++.+.+.|+... .
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 445789999999999999999999999999998642 23444555664321 1
Q ss_pred CHHHHhhcCCEEEEeCCCc
Q 018506 94 TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~~ 112 (355)
+..+.....|+||+++-..
T Consensus 215 ~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 215 TLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CHHHHHhhCCEEEEeeCCC
Confidence 2333345689999998543
No 376
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.41 E-value=0.062 Score=49.94 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
-++|.|.| +|.+|+.++..|++.||+|.+.+|+++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 47899998 6999999999999999999999887654
No 377
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.15 Score=50.26 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=45.8
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-HH----HHHHhCCCCCCC--CHH-----HHhhcCCEEEEeC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VM----KMFSDMGVPTKE--TPF-----EVAEASDVVITML 109 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~~----~~l~~~g~~~~~--s~~-----e~~~~aDiVi~~v 109 (355)
||.|||+|..|.+.|+.|.+.|++|.++|+.+. .. +.+.+.|+.... ... +...+.|+||.+-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 699999999999999999999999999997643 22 235555654321 111 3566899998863
No 378
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.40 E-value=0.055 Score=53.03 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KE 93 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~ 93 (355)
..-.+|+|||.|.-|.+-|..|+++||+|++|++.+. .++.+.+.|+.+ .-
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i 200 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI 200 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC
Confidence 3448999999999999999999999999999988654 123344444221 34
Q ss_pred CHHHHhhcCCEEEEeCCCc
Q 018506 94 TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 94 s~~e~~~~aDiVi~~v~~~ 112 (355)
+.+++.+.-|.|++++.+.
T Consensus 201 t~~~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 TLEELLKEYDAVFLATGAG 219 (457)
T ss_pred CHHHHHHhhCEEEEecccc
Confidence 7888888889999997543
No 379
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.38 E-value=0.042 Score=58.16 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=48.8
Q ss_pred CCceEEEEcccHHhHHH-HHHHHHCCCcEEEEeCCh-hHHHHHHhCCCCCC-CCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRM-ASNLMKAGYKMAVHDVNC-NVMKMFSDMGVPTK-ETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~i-a~~L~~~G~~V~v~dr~~-~~~~~l~~~g~~~~-~s~~e~~~~aDiVi~~ 108 (355)
++.+|.|||+|..|.+. |+.|.+.|++|+++|.++ ...+.+.+.|+... ....+.+..+|+||..
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYS 70 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEEC
Confidence 44569999999999997 999999999999999654 33455666676442 1233556689999877
No 380
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.36 E-value=0.033 Score=52.65 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=52.1
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCC-CcEEEE-eCChhHHHHHHhC-------CC----C---CCCCHHHHhhcCCEEEEe
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAG-YKMAVH-DVNCNVMKMFSDM-------GV----P---TKETPFEVAEASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G-~~V~v~-dr~~~~~~~l~~~-------g~----~---~~~s~~e~~~~aDiVi~~ 108 (355)
|||+|+|+ |.||..+++.|.+.. +++... +++++.-+.+.+. +. . +.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 68999995 999999999998876 476655 5443221222110 00 0 001122345789999999
Q ss_pred CCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCC
Q 018506 109 LPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 143 (355)
Q Consensus 109 v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~ 143 (355)
+|..... .+... ... .|..+||.|..
T Consensus 81 ~p~~~s~-~~~~~---~~~-----~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAE-EVEPK---LAE-----AGKPVFSNASN 106 (341)
T ss_pred CCHHHHH-HHHHH---HHH-----CCCEEEECChh
Confidence 9976333 33221 221 34567787765
No 381
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.35 E-value=0.081 Score=48.36 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+.|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 214 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITP----- 214 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 34789999764 68999999999999999998743 23577888999999999987743322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 215 -~~vk-----~GavVIDVGin~ 230 (287)
T PRK14173 215 -EMVR-----PGAVVVDVGINR 230 (287)
T ss_pred -HHcC-----CCCEEEEccCcc
Confidence 2443 567999987764
No 382
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.33 E-value=0.027 Score=53.40 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=53.2
Q ss_pred CceEEEEcc-cHHhHHHHH-HHHHCCCc---EEEEeCC--hhHHHHHHhCCCCCC--CCHHHHhhcCCEEEEeCCCchHH
Q 018506 45 FESVGFIGL-GNMGFRMAS-NLMKAGYK---MAVHDVN--CNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHV 115 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~-~L~~~G~~---V~v~dr~--~~~~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v~~~~~~ 115 (355)
|++|||||+ |.+|.-|.+ .|.+..++ +..+... ..+...+........ .+. +..+++|++|+|+|.. ..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HH
Confidence 479999987 999999998 56666666 6655432 111112222111222 223 3347899999999875 44
Q ss_pred HHHhcCCCccccCCCCCCC--eEEEEcCCCC
Q 018506 116 LDVYNGPNGLLQGGNSVRP--QLLIDSSTID 144 (355)
Q Consensus 116 ~~vl~~~~~~l~~~~~~~~--~ivi~~st~~ 144 (355)
+.+... +.+ .| .+|||.|+..
T Consensus 79 ~~~~~~---~~~-----aG~~~~VID~Ss~f 101 (369)
T PRK06598 79 NEVYPK---LRA-----AGWQGYWIDAASTL 101 (369)
T ss_pred HHHHHH---HHh-----CCCCeEEEECChHH
Confidence 444332 222 33 4689988743
No 383
>PRK06153 hypothetical protein; Provisional
Probab=95.29 E-value=0.065 Score=50.89 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
..+|+|||+|..|+.++..|++.|. +++++|.+.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999996 688888653
No 384
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.27 E-value=0.025 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=32.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.++|.|||.|..|.++|..|.+.|++|++++|+++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 36899999999999999999999999999998764
No 385
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.25 E-value=0.076 Score=50.45 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 44789999999999999999999997 588888765
No 386
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.24 E-value=0.084 Score=46.91 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=35.9
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|.|. |.+|..+++.|.+.|++|.+.+|++++.+.+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34467888875 99999999999999999999999988766543
No 387
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.1 Score=47.64 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+||.++..+.-+..
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~----- 218 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKA----- 218 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCH-----
Confidence 34789999765 68999999999999999999743 24677888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+.+.
T Consensus 219 -~~ik-----~gavVIDvGin~ 234 (284)
T PRK14177 219 -DWIS-----EGAVLLDAGYNP 234 (284)
T ss_pred -HHcC-----CCCEEEEecCcc
Confidence 2443 567999998764
No 388
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.093 Score=47.76 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 217 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE----- 217 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 44789999765 68999999999999999999753 23678888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||...+.
T Consensus 218 -~~ik-----~gavVIDvGin~ 233 (278)
T PRK14172 218 -EYVK-----EGAIVIDVGTSS 233 (278)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999986654
No 389
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.16 E-value=0.071 Score=47.11 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
..++|-|.| .|.+|..+++.|+++|++|++++|++++.+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 346788997 59999999999999999999999998776544
No 390
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.16 E-value=0.078 Score=50.32 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=53.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHh-CCCCCCCCHH---------HHh--hcCCEEEEeCCCch
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPTKETPF---------EVA--EASDVVITMLPSSS 113 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~-~g~~~~~s~~---------e~~--~~aDiVi~~v~~~~ 113 (355)
++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 79999999999999888888885 68888999999988877 4443222211 111 24888888888665
Q ss_pred HHHHHhc
Q 018506 114 HVLDVYN 120 (355)
Q Consensus 114 ~~~~vl~ 120 (355)
.+.+.+.
T Consensus 251 ~~~~ai~ 257 (350)
T COG1063 251 ALDQALE 257 (350)
T ss_pred HHHHHHH
Confidence 5555544
No 391
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.1 Score=48.03 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~----- 217 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGA----- 217 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 34789999865 58999999999999999998642 23677888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~ik-----~gavVIDvGin~ 233 (297)
T PRK14186 218 -EMVK-----PGAVVVDVGIHR 233 (297)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999997664
No 392
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.15 E-value=0.099 Score=47.67 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~~----- 215 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIGA----- 215 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 34789999865 58999999999999999998642 23577888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 216 -~~vk-----~GavVIDvGin~ 231 (282)
T PRK14169 216 -DAVK-----PGAVVIDVGISR 231 (282)
T ss_pred -HHcC-----CCcEEEEeeccc
Confidence 2443 567999987654
No 393
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.099 Score=47.69 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=58.7
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.++..+..+..
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~----- 216 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS----- 216 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH-----
Confidence 44789999865 589999999999999999987532 4577888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~vk-----~GavVIDvGin~ 232 (282)
T PRK14166 217 -DMVK-----EGVIVVDVGINR 232 (282)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999987654
No 394
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.11 E-value=0.037 Score=48.06 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
...||.|||+|.+|+.++++|+..|. +++++|.+.-
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 45789999999999999999999996 5999987643
No 395
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.1 Score=47.64 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=57.9
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+||+++..+.-+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~~----- 217 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFITA----- 217 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCCH-----
Confidence 34789999765 68999999999999999999753 23667778999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~vk-----~gavVIDvGin~ 233 (282)
T PRK14180 218 -DMVK-----EGAVVIDVGINH 233 (282)
T ss_pred -HHcC-----CCcEEEEecccc
Confidence 2443 567999987654
No 396
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.09 E-value=0.09 Score=49.11 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++|||||.++..+.-+..
T Consensus 213 ~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~~----- 273 (345)
T PLN02897 213 AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVRG----- 273 (345)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 44789999865 57999999999999999998743 23567888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 274 -d~vk-----~GavVIDVGin~ 289 (345)
T PLN02897 274 -SWLK-----PGAVVIDVGTTP 289 (345)
T ss_pred -HHcC-----CCCEEEEccccc
Confidence 2443 567999997754
No 397
>PLN02686 cinnamoyl-CoA reductase
Probab=95.08 E-value=0.075 Score=50.75 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 42 SCQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 42 ~~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
.+.+++|.|.|. |.+|+.++..|++.||+|.++.|+.+..+.+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 355678888865 9999999999999999999888877665544
No 398
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.12 Score=48.74 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=35.5
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+..++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3445677776 599999999999999999999999988776554
No 399
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.06 E-value=0.029 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|.-|..+|..|+++|++|+++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 4799999999999999999999999999998765
No 400
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.11 Score=47.48 Aligned_cols=76 Identities=11% Similarity=0.113 Sum_probs=58.0
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHH--CCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhc
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYN 120 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~--~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~ 120 (355)
.-.++.|||- ..+|.+++..|.+ ++..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~--- 219 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA--- 219 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH---
Confidence 3478999975 5689999999998 67889998753 34678889999999999987743322
Q ss_pred CCCccccCCCCCCCeEEEEcCCCC
Q 018506 121 GPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 121 ~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 220 ---~~ik-----~GavVIDvGin~ 235 (284)
T PRK14193 220 ---DMVK-----PGAAVLDVGVSR 235 (284)
T ss_pred ---HHcC-----CCCEEEEccccc
Confidence 2443 567999987654
No 401
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.11 Score=47.31 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=35.6
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 35677775 5999999999999999999999999888766654
No 402
>PRK07538 hypothetical protein; Provisional
Probab=95.03 E-value=0.029 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=32.1
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||+|..|.++|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
No 403
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.03 E-value=0.082 Score=49.65 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=32.7
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 80 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~ 80 (355)
+++++|.|.| +|.+|+.++..|.+.|++|.+..|+++.
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 4568899996 8999999999999999999888777543
No 404
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.02 E-value=0.049 Score=52.15 Aligned_cols=64 Identities=27% Similarity=0.356 Sum_probs=45.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCC-CCCC---HHHHhhcCCEEEEe
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVP-TKET---PFEVAEASDVVITM 108 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~-~~~s---~~e~~~~aDiVi~~ 108 (355)
|++|||||.|..|..++....+.|++|.++|.+++. ...+.+.-+. ...+ +.+.++.+|+|...
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e 70 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE 70 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence 578999999999999999999999999999987654 2333322111 1223 44567789987543
No 405
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.01 E-value=0.051 Score=50.90 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=40.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHC------C--Cc-EEEEeCChhHH-------HHH---HhCC-C--CCCC--CHHHHh-h
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA------G--YK-MAVHDVNCNVM-------KMF---SDMG-V--PTKE--TPFEVA-E 100 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~------G--~~-V~v~dr~~~~~-------~~l---~~~g-~--~~~~--s~~e~~-~ 100 (355)
|||+|||+|++|+.+++.|.+. | .+ |.++|++.... +.+ .+.+ . .... +..++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 34 34557654221 111 1111 1 1112 444443 3
Q ss_pred cCCEEEEeCCC
Q 018506 101 ASDVVITMLPS 111 (355)
Q Consensus 101 ~aDiVi~~v~~ 111 (355)
++|+||-|.++
T Consensus 81 ~~DVvVE~t~~ 91 (326)
T PRK06392 81 KPDVIVDVTPA 91 (326)
T ss_pred CCCEEEECCCC
Confidence 68999999874
No 406
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.01 E-value=0.077 Score=50.21 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
...|||-|.| +|.+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 3558999997 69999999999999999999999987765543
No 407
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.038 Score=53.39 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=42.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHh--hcCCEEEEe
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA--EASDVVITM 108 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~--~~aDiVi~~ 108 (355)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+... . .+.. +++|+||..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence 78999999999999999999 9999999996543221 222354442 2 2223 468988876
No 408
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.98 E-value=0.092 Score=48.78 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=31.5
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.++++|+..|. +++++|.+.-....+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNL 39 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNL 39 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhc
Confidence 68999999999999999999996 588998765444444
No 409
>PLN02214 cinnamoyl-CoA reductase
Probab=94.97 E-value=0.078 Score=50.08 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=45.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHH-----HHHhC--CC-----C--CCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--GV-----P--TKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~-----~l~~~--g~-----~--~~~s~~e~~~~aDiVi~~ 108 (355)
++++|.|.|. |.+|+.++..|.++||+|.+..|+.+... .+... .+ . -..+..++++.+|+||-+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~ 88 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHT 88 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEe
Confidence 4578999986 99999999999999999999999766421 11110 11 1 112345566778888877
Q ss_pred C
Q 018506 109 L 109 (355)
Q Consensus 109 v 109 (355)
.
T Consensus 89 A 89 (342)
T PLN02214 89 A 89 (342)
T ss_pred c
Confidence 5
No 410
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.96 E-value=0.097 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
...++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345789999999999999999999999999999764
No 411
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.12 Score=47.32 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||- ..+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~----- 217 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITA----- 217 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCH-----
Confidence 4478999975 568999999999999999998642 23677888999999999987743222
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 218 -~~ik-----~gavVIDvGi~~ 233 (284)
T PRK14190 218 -DMVK-----EGAVVIDVGVNR 233 (284)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999987654
No 412
>PRK06139 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.12 Score=48.58 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=34.8
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 345777766 89999999999999999999999998876654
No 413
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.92 E-value=0.069 Score=57.20 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=50.7
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh---------------------HHHHHHhCCCCC--------CCC
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KET 94 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~g~~~--------~~s 94 (355)
...||+|||.|.-|.+-|..|++.||+|++|++.+. .++.+.+.|+.+ .-+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit 384 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT 384 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence 457899999999999999999999999999987642 123444455542 124
Q ss_pred HHHHhh-cCCEEEEeCCC
Q 018506 95 PFEVAE-ASDVVITMLPS 111 (355)
Q Consensus 95 ~~e~~~-~aDiVi~~v~~ 111 (355)
.+++.+ ..|.||+++-.
T Consensus 385 ~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 385 LEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHHhccccCCEEEEeCCC
Confidence 566654 68999999743
No 414
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.12 Score=47.41 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~----- 219 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVKY----- 219 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-----
Confidence 44789999765 57999999999999999998753 24577888999999999988744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ ++.+|||...+.
T Consensus 220 -~~ik-----~gaiVIDVGin~ 235 (294)
T PRK14187 220 -SWIK-----KGAIVIDVGINS 235 (294)
T ss_pred -HHcC-----CCCEEEEecccc
Confidence 2443 567999987653
No 415
>PRK07588 hypothetical protein; Provisional
Probab=94.88 E-value=0.034 Score=53.40 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=31.6
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
|+|.|||.|..|..+|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999999999999999999998654
No 416
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.87 E-value=0.2 Score=46.06 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=55.8
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCCCCCCHHHHhhc--CCEEEEeCCCchHHHHHh
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHVLDVY 119 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--aDiVi~~v~~~~~~~~vl 119 (355)
+..||.|.|. |.+|..+..+|.+.|++ .+|-.+|.. .+++ .|.+...++.|+-+. .|+.++++|.. .+.+++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l 82 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI 82 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH
Confidence 4578999998 88999999999999997 555444431 1111 467888899999876 89999999975 666655
Q ss_pred cC
Q 018506 120 NG 121 (355)
Q Consensus 120 ~~ 121 (355)
.+
T Consensus 83 ~e 84 (291)
T PRK05678 83 LE 84 (291)
T ss_pred HH
Confidence 54
No 417
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.86 E-value=0.054 Score=51.69 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999996 799998764
No 418
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.84 E-value=0.041 Score=53.21 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=32.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|.|||+|..|.++|..|+++|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 46899999999999999999999999999998764
No 419
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.84 E-value=0.14 Score=46.72 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCc-EEEEeCChhHHHHHHhCCCC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~-V~v~dr~~~~~~~l~~~g~~ 90 (355)
.+|.|+|+|.+|...++.+...|.. |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 5799999999999999998888987 88889999988877776653
No 420
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=94.83 E-value=0.047 Score=53.80 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
...++|+|||+|.-|.+.|..|.+.|++|++++++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3457899999999999999999999999999998753
No 421
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.82 E-value=0.06 Score=50.93 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=32.3
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|||-|.| +|.+|+.++..|.++|++|+++||...
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3568999997 599999999999999999999998543
No 422
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.81 E-value=0.041 Score=52.86 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..+.+|.|||.|..|.++|..|+++|++|+++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 344679999999999999999999999999999865
No 423
>PRK06847 hypothetical protein; Provisional
Probab=94.79 E-value=0.04 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
+++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998754
No 424
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.18 Score=49.36 Aligned_cols=63 Identities=22% Similarity=0.259 Sum_probs=45.2
Q ss_pred ceEEEEcccHHhHHHHHHHHHC--CCcEEEEeCChhH--HHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 46 ESVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNV--MKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~--G~~V~v~dr~~~~--~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
++|.|||+|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+... ....+.+.++|+||.+-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~Sp 76 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNP 76 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECC
Confidence 6799999999999999999988 5889999975432 234533 55442 11234457899888873
No 425
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.78 E-value=0.032 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
+++|.|||+|..|..+|..|+++|++|+++++.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~ 35 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCc
Confidence 4679999999999999999999999999999973
No 426
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.75 E-value=0.038 Score=53.61 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=31.5
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~ 79 (355)
|||.|||.|.-|.++|..|.++|+ +|++|+|.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 689999999999999999999985 9999999765
No 427
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.05 Score=50.17 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=43.8
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH----hCCC--CCCCCHHHHhhcC-CEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS----DMGV--PTKETPFEVAEAS-DVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~----~~g~--~~~~s~~e~~~~a-DiVi~~v 109 (355)
|+|-|.| .|.+|+.++..|.++||+|.+.+|.+....... .... .-.....+..+.. |.||-+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 3489998 699999999999999999999999877654432 0011 1112333344455 7887764
No 428
>PLN02477 glutamate dehydrogenase
Probab=94.74 E-value=0.19 Score=48.55 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=57.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEE-EEeCC----------hhHHHHHHhCCC--------CCCCCHHHH-hhcC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMA-VHDVN----------CNVMKMFSDMGV--------PTKETPFEV-AEAS 102 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~-v~dr~----------~~~~~~l~~~g~--------~~~~s~~e~-~~~a 102 (355)
.+-++|+|.|.|++|+.+|+.|.+.|..|+ +.|.+ .+.+.+..+.+. ... +.+++ ..+|
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~ 282 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPC 282 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccc
Confidence 355789999999999999999999999987 66776 555544333211 111 22332 3489
Q ss_pred CEEEEeCCCchHHHHHhcCCCccccCCCCCCCeEEEEcCCCCH
Q 018506 103 DVVITMLPSSSHVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 145 (355)
Q Consensus 103 DiVi~~v~~~~~~~~vl~~~~~~l~~~~~~~~~ivi~~st~~~ 145 (355)
||++-|--....-++.... + +-++|+...+...
T Consensus 283 DvliP~Al~~~I~~~na~~----i------~ak~I~egAN~p~ 315 (410)
T PLN02477 283 DVLIPAALGGVINKENAAD----V------KAKFIVEAANHPT 315 (410)
T ss_pred cEEeeccccccCCHhHHHH----c------CCcEEEeCCCCCC
Confidence 9888774333222222211 1 3358888777764
No 429
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.73 E-value=0.082 Score=46.67 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=35.2
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|.|+| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 36788887 599999999999999999999999988766554
No 430
>PLN02650 dihydroflavonol-4-reductase
Probab=94.73 E-value=0.11 Score=49.00 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh----CC-----------CCCCCCHHHHhhcCCEEEE
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MG-----------VPTKETPFEVAEASDVVIT 107 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~----~g-----------~~~~~s~~e~~~~aDiVi~ 107 (355)
+.++|-|.| .|.+|+.++..|++.|++|.+.+|+++....+.. .+ +.-..+..++++.+|.||-
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 346899997 5999999999999999999999888765543221 01 1111234556667887776
Q ss_pred eC
Q 018506 108 ML 109 (355)
Q Consensus 108 ~v 109 (355)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 64
No 431
>PRK07411 hypothetical protein; Validated
Probab=94.71 E-value=0.078 Score=51.05 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.0
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34689999999999999999999996 578887653
No 432
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.70 E-value=0.045 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
..+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3589999999999999999999999999999764
No 433
>PRK08017 oxidoreductase; Provisional
Probab=94.70 E-value=0.081 Score=47.30 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 36889988 999999999999999999999999888766544
No 434
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.68 E-value=0.12 Score=49.01 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=38.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeC---ChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDV---NCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr---~~~~~~~l~~~g~~ 90 (355)
-.+|.|+|+|.+|...++.+...|.+|++++| ++++.+.+.+.|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 35799999999999999998889999999998 67787777666654
No 435
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.67 E-value=0.075 Score=49.49 Aligned_cols=66 Identities=23% Similarity=0.197 Sum_probs=54.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCc
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~ 112 (355)
.++-|.|.|..|..+|.+|...|-.|.|+..+|-++-+..=.|..+. ..+|++..+|++|.++-+-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnk 275 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNK 275 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCc
Confidence 45777799999999999999999999999998877655554676655 5788899999999998654
No 436
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.24 Score=45.68 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
....+|-|.| .|.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~ 51 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAA 51 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3445677776 5899999999999999999999999988776654
No 437
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.67 E-value=0.11 Score=47.28 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCC-CcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G-~~V~v~dr~~~ 79 (355)
....+|.|+|+|.+|+.++..|++.| .+++++|.+.-
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 34578999999999999999999999 57888887643
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.092 Score=51.68 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh---CCCCCCCCHHHHhhcCCEEEEe
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD---MGVPTKETPFEVAEASDVVITM 108 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~---~g~~~~~s~~e~~~~aDiVi~~ 108 (355)
...||.|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+ ... ......+.+.++|+||..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IAALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-eccCChhHhhCCCEEEEC
Confidence 34689999999999999999995 9999999965443322222 111 112223445689998887
No 439
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.16 Score=46.46 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.++.|||-+ .+|.+++..|.+.|..|++++.. +.++.+.+++||+||.++..+..+..
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~----- 218 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTA----- 218 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCH-----
Confidence 34789999865 57999999999999999998742 24678888999999999987743332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+.+.
T Consensus 219 -~~vk-----~GavVIDvGin~ 234 (288)
T PRK14171 219 -EYFN-----PESIVIDVGINR 234 (288)
T ss_pred -HHcC-----CCCEEEEeeccc
Confidence 2443 567999987653
No 440
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.084 Score=48.10 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=36.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhC
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 87 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~ 87 (355)
++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 35777776 9999999999999999999999999888776643
No 441
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.19 Score=45.51 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=34.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 5899999999999999999999999887766543
No 442
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.17 Score=45.79 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=35.3
Q ss_pred CceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 457888865 99999999999999999999999998876654
No 443
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.57 E-value=0.17 Score=46.13 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+++..|++++.. +.++.+..++||+||.++..+.-+..
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~----- 216 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKG----- 216 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCH-----
Confidence 34789999765 58999999999999999998653 23567888999999999987643322
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.++||.+...
T Consensus 217 -~~ik-----~gaiVIDvGin~ 232 (282)
T PRK14182 217 -AWVK-----EGAVVIDVGMNR 232 (282)
T ss_pred -HHcC-----CCCEEEEeecee
Confidence 2443 567999987654
No 444
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=94.56 E-value=0.24 Score=48.67 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCC--CeEEeCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC--CCHHHHHHHHH
Q 018506 197 EDAYQAAKPLFLSMGK--NTIYCGGAGN-----GAAAKICNNLTMAVSMLGVSEALTLGQS----LG--ISASTLTKILN 263 (355)
Q Consensus 197 ~~~~~~v~~ll~~~g~--~~~~~g~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~la~~----~G--i~~~~~~~~~~ 263 (355)
.+++.++.+.++.... ...+.|+.+. ++..|.+.|.+.+..+.+++|.+.+.++ +| +|..++.++.+
T Consensus 271 ~AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr 350 (459)
T PRK09287 271 EAVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWR 350 (459)
T ss_pred HHHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 3444455554444321 1234454433 7899999999999999999999999766 44 78999999999
Q ss_pred hcC-CCcccccCCCCCCCcccCCC--CCCCCCCCcc--hhhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHCCCCC
Q 018506 264 SSS-ARCWSSDSYNPVPGVMEGVP--ASRNYGGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 338 (355)
Q Consensus 264 ~~~-~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~kd~~~~~~~a~~~gv~~pi~~~~~~~~~~~~~~g~g~ 338 (355)
.|+ -.+|..+... ..++..+ .+--+.+.|. +......++.++..+-+.|+|+|.+.+++..|..-.....+.
T Consensus 351 ~GcIIRs~lL~~i~---~a~~~~~~l~nl~~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~a 427 (459)
T PRK09287 351 GGCIIRAQFLQKIT---DAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPA 427 (459)
T ss_pred CCCEEeHHHHHHHH---HHHHhCCCchhhcCCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccH
Confidence 887 3555433111 1111101 0001112221 223344557889999999999999999996666554443332
Q ss_pred CcHHHHHHHHhcCC
Q 018506 339 KDFSCVFQHYYGGK 352 (355)
Q Consensus 339 ~d~~~~~~~~~~~~ 352 (355)
-.-...|-+|++|
T Consensus 428 -nliqaqRd~FGaH 440 (459)
T PRK09287 428 -NLIQAQRDYFGAH 440 (459)
T ss_pred -HHHHHHHhHhCCC
Confidence 3333334455554
No 445
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.56 E-value=0.047 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.8
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++++|||+|.-|.+.|+.|.+.|++|+++.|+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 457899999999999999999999999999988754
No 446
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.53 E-value=0.081 Score=46.59 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=35.6
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
||+-|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888865 899999999999999999999999888766543
No 447
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.52 E-value=0.087 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
...||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 44689999999999999999999997 588888654
No 448
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.51 E-value=0.047 Score=52.38 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHC---CCcEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKA---GYKMAVHDVN 77 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~---G~~V~v~dr~ 77 (355)
|++++|.|||+|..|.++|..|+++ |++|+++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3557899999999999999999998 9999999984
No 449
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.50 E-value=0.46 Score=46.48 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=45.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH--HHHHHhCCCCCC--CCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSDMGVPTK--ETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~--~~~l~~~g~~~~--~s~~e~~~~aDiVi~~v 109 (355)
..+|.|||.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+... ....+.+++.|+||..-
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 357999999999999999999999999999965432 23343 254432 12334456789877663
No 450
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.50 E-value=0.15 Score=45.51 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=34.9
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 5688887 699999999999999999999999988766543
No 451
>PRK08013 oxidoreductase; Provisional
Probab=94.50 E-value=0.049 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5799999999999999999999999999998765
No 452
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.49 E-value=0.089 Score=48.34 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCCh
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 78 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~ 78 (355)
||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999996 588887653
No 453
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.14 Score=44.73 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=33.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++|-|.| .|.+|..++..|+++ ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 46788886 599999999999999 99999999987765554
No 454
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.49 E-value=0.078 Score=52.10 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++.|.|||+|.-|++.|..|+++|++|.++++.+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3456899999999999999999999999999998754
No 455
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.48 E-value=0.096 Score=46.52 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=34.6
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 346788887 79999999999999999999999997665443
No 456
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.26 Score=43.26 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcC
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNG 121 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~ 121 (355)
+.++|-|.| .|.+|..+++.|++.|++|++.+|++++..+..+. .. .....++..-+.+..+++.++..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH
Confidence 346788886 59999999999999999999999988765443221 00 01233444445555666665554
No 457
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.43 E-value=0.089 Score=46.97 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=35.6
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
|+|-|+| .|.+|..+++.|.+.|++|++.+|++++++.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 6788887 5999999999999999999999999887766543
No 458
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.41 E-value=0.21 Score=47.03 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=39.5
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 90 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~ 90 (355)
..+|.|+|+|.+|...++.+...|. .|++.++++++.+.+.+.|+.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 3579999999999999998888897 588899999998888777654
No 459
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.39 E-value=0.081 Score=48.26 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=40.0
Q ss_pred eEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcC--CEEEEeCC
Q 018506 47 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEAS--DVVITMLP 110 (355)
Q Consensus 47 kIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a--DiVi~~v~ 110 (355)
||.|+|. |.+|+.+++.|.+.||+|++++|+.. .+.-..+..+++++. |+||-+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 5889984 99999999999999999999988511 111122344445544 88887753
No 460
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.33 E-value=0.16 Score=45.18 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=31.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHH
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 84 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l 84 (355)
||.|||+|.+|+.+++.|+..|. +++++|.+.=....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL 39 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNL 39 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh
Confidence 68999999999999999999997 588888765433333
No 461
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.33 E-value=0.22 Score=44.77 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=34.5
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 5789999999999999999999999888776654
No 462
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.28 E-value=0.13 Score=47.62 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 111 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~ 111 (355)
..+|+|||.-.=-..+++.|.+.|++|.++.-+.+. ....|+...++.+++++++|+|+..+|.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence 357999999999999999999999999987653221 1235778888888999999999999874
No 463
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.1 Score=46.38 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=35.0
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
|++|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 45788886 799999999999999999999999988765543
No 464
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.13 Score=45.65 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
+.+++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3467889987 899999999999999999999999887766543
No 465
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.23 E-value=0.11 Score=47.70 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=27.1
Q ss_pred eEEEEcccHHhHHHHHHHHHCCC-cEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~ 77 (355)
||.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999996 47777654
No 466
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.2 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.0
Q ss_pred ceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 45677765 89999999999999999999999988776654
No 467
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.21 E-value=0.12 Score=45.68 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=35.7
Q ss_pred CCCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 42 SCQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 42 ~~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
.++.++|-|.| .|.+|..+++.|++.|++|++++|++++.+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 34446788886 59999999999999999999999998876554
No 468
>PRK07045 putative monooxygenase; Reviewed
Probab=94.21 E-value=0.063 Score=51.53 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..++|.|||+|..|...|..|+++|++|+++++.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 346899999999999999999999999999998764
No 469
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.20 E-value=0.064 Score=51.78 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.8
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||.|||+|..|.++|..|.++|++|.++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6799999999999999999999999999998754
No 470
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.18 E-value=0.23 Score=45.36 Aligned_cols=76 Identities=16% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHC----CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.-.++.|||-+ .+|.+++..|.++ +..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~- 216 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKE- 216 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCH-
Confidence 34789999865 5799999999988 6789988642 23678888999999999987743322
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 217 -----~~ik-----~GavVIDvGin~ 232 (287)
T PRK14181 217 -----EMIA-----EKAVIVDVGTSR 232 (287)
T ss_pred -----HHcC-----CCCEEEEecccc
Confidence 2443 567999987654
No 471
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.18 E-value=0.059 Score=51.53 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.3
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
|.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 4679999999999999999999999999999763
No 472
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.18 E-value=0.068 Score=50.00 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEEcccHHhHHHHHHHHHCCCcEEEEeCC
Q 018506 47 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 77 (355)
Q Consensus 47 kIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~ 77 (355)
.|.|||.|..|..+|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
No 473
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.17 E-value=0.18 Score=46.70 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=51.0
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCCCc
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGPNG 124 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~~~ 124 (355)
.||+|+| .|..|.-+.+.|..+. ++.+.....+.. .. ..+.+++++++|++|+|+|... ..+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~~-s~~~~~~--- 68 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------KD-AAERAKLLNAADVAILCLPDDA-AREAVSL--- 68 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------cC-cCCHhHhhcCCCEEEECCCHHH-HHHHHHH---
Confidence 4899995 6999999999999864 333332221110 11 1245566678999999999863 3333322
Q ss_pred cccCCCCCCCeEEEEcCCCC
Q 018506 125 LLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 125 ~l~~~~~~~~~ivi~~st~~ 144 (355)
+.+ .+..|||.|+..
T Consensus 69 ~~~-----~g~~VIDlSadf 83 (310)
T TIGR01851 69 VDN-----PNTCIIDASTAY 83 (310)
T ss_pred HHh-----CCCEEEECChHH
Confidence 211 456899998743
No 474
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.15 E-value=0.062 Score=51.50 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=31.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||.|..|.++|..|+++|++|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 5699999999999999999999999999998753
No 475
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.15 E-value=0.25 Score=45.38 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=45.3
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCC-cEEEEeCChhHHHHHHhCCCCCCCCHHH
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFE 97 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~~s~~e 97 (355)
.+++|+|+|.+|.+.+..-..+|- +++.+|.|+++.+..++.|++-.-++.|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d 246 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD 246 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence 679999999999999999988885 6999999999999999888876655553
No 476
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.15 E-value=0.14 Score=45.58 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=34.7
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 84 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l 84 (355)
+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467888876 9999999999999999999999987765544
No 477
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.15 E-value=0.071 Score=51.35 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.9
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.+|.|||+|..|.+.|..|+++|++|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999998764
No 478
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.14 E-value=0.28 Score=43.87 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.2
Q ss_pred CCCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.+.++|-|.| .|.+|..+++.|++.|++|++++|+++..+.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 52 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAV 52 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 3446677775 589999999999999999999999987765543
No 479
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=94.13 E-value=0.1 Score=51.80 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=29.7
Q ss_pred CceEEEEcccHHhHHHHHHHHHCC--CcEEEEeCCh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNC 78 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G--~~V~v~dr~~ 78 (355)
...|.|||.|.||.++|..|++.+ .+|+++++..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 457999999999999999999963 5899999864
No 480
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.24 Score=45.59 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHC----CCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDV 118 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~----G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~v 118 (355)
.-.+|.|||- ..+|.+++..|.+. +..|++++.. +.++.+.+++||+||.++..+.-+..
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~- 224 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKP- 224 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCH-
Confidence 3478999975 56899999999988 6789988643 24677888999999999977643222
Q ss_pred hcCCCccccCCCCCCCeEEEEcCCCC
Q 018506 119 YNGPNGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 119 l~~~~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||.+...
T Consensus 225 -----~~ik-----~gavVIDvGin~ 240 (297)
T PRK14168 225 -----EWIK-----PGATVIDVGVNR 240 (297)
T ss_pred -----HHcC-----CCCEEEecCCCc
Confidence 2443 567999987654
No 481
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.08 E-value=0.15 Score=45.71 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|.|. |.+|..++..|++.|++|.+.+|++++.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVA 48 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 34456777766 99999999999999999999999987766554
No 482
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.15 Score=45.68 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 43 CQFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 43 ~~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
++.++|-|+|+ |.+|..+++.|++.|++|++.+|++.+.+.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34467888977 99999999999999999999999887766554
No 483
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.36 Score=44.92 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=33.5
Q ss_pred CCceEEEE-cccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFI-GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiI-G~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+.+++-|. |.+.+|..+++.|++.|++|++.+|+.++.++..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 33445555 5788999999999999999999999988766543
No 484
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.08 E-value=0.2 Score=46.74 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 81 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~ 81 (355)
.++|-|.| .|.+|+.++..|++.||+|++..|+++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR 42 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch
Confidence 46788887 59999999999999999999888876643
No 485
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.24 Score=44.24 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=33.7
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4566675 589999999999999999999999988776654
No 486
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.07 E-value=0.099 Score=51.78 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.2
Q ss_pred CCCCceEEEEcccHHhHHHHHHHHH--CCCcEEEEeCChh
Q 018506 42 SCQFESVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCN 79 (355)
Q Consensus 42 ~~~~mkIgiIG~G~mG~~ia~~L~~--~G~~V~v~dr~~~ 79 (355)
.....||+|||.|.-|..-|..|++ .||+|++|++.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 3445789999999999999999987 7999999998764
No 487
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.07 E-value=0.19 Score=45.53 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=35.5
Q ss_pred CCceEEEEcc-cHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 44 QFESVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 44 ~~mkIgiIG~-G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
..++|-|.|. |.+|..+++.|++.|++|++++|++++.+.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3467888885 89999999999999999999999987765543
No 488
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.21 Score=44.59 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=34.6
Q ss_pred CceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHH
Q 018506 45 FESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 85 (355)
Q Consensus 45 ~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~ 85 (355)
.++|-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 36677775 589999999999999999999999987765543
No 489
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.06 E-value=0.12 Score=48.30 Aligned_cols=182 Identities=15% Similarity=0.108 Sum_probs=91.1
Q ss_pred HhHHHHHHHHHCCCcEEEEeCChhHHHH----HHhC-------C----C-------CCCC-CHHHHhhcCCEEEEeCCCc
Q 018506 56 MGFRMASNLMKAGYKMAVHDVNCNVMKM----FSDM-------G----V-------PTKE-TPFEVAEASDVVITMLPSS 112 (355)
Q Consensus 56 mG~~ia~~L~~~G~~V~v~dr~~~~~~~----l~~~-------g----~-------~~~~-s~~e~~~~aDiVi~~v~~~ 112 (355)
||..||..+..+|++++..+.+..-++. +... + . .... ....-++++|.|+-++..+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 8999999999999999999998654331 1110 0 0 0111 1122456899998888766
Q ss_pred hHHH-HHhcCCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCceEEeCCCCCChHHHhcCceEE
Q 018506 113 SHVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 191 (355)
Q Consensus 113 ~~~~-~vl~~~~~~l~~~~~~~~~ivi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~pv~g~~~~~~~g~~~~ 191 (355)
-.++ +++..++.+.+. +.-.=.++|+..+.. +.+.+... .... +.||.++...-.........-+
T Consensus 81 l~Lk~~l~~~le~v~~~----~~i~gsntSs~~~~~---isa~ld~~--e~vv----g~h~fspa~~m~LlEii~~~~t- 146 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPP----KCIRGSNTSSLDINV---ISAGLDRP--EMVV----GMHFFSPAHWMQLLEIILALYT- 146 (380)
T ss_pred HHHHHHHHHHHHhhcCC----cceeeeccccCChHH---HhhccCch--hhhc----cccccCHHHHHHHHHHHHhcCC-
Confidence 5555 455554444421 211233445544443 33322110 0111 2455543322222222211111
Q ss_pred EecCCHHHHHHHHHHHHHcCCCeEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 018506 192 MVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 263 (355)
Q Consensus 192 ~~gg~~~~~~~v~~ll~~~g~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gi~~~~~~~~~~ 263 (355)
+......+-+.-...++-++.+|+ ..+..+ |.+. -..+.++..+....|+++..+..+..
T Consensus 147 ----S~~~iA~Ain~~~~~gk~~vvVg~-c~gf~v----~r~l---~~y~~~~~~~l~e~g~~p~~iD~~~t 206 (380)
T KOG1683|consen 147 ----SKLTIATAINGGSPAGKLPVVVGN-CCGFRV----NRLL---PPYTIGLNELLLEIGADPWLIDSLIT 206 (380)
T ss_pred ----CchHHHHHHhcccccCCccEEecc-CCceEE----Eecc---cHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444555555666666776666666 122111 1111 12234555666666777766666554
No 490
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.04 E-value=0.22 Score=46.76 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCceEEEEccc-HHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhhcCCEEEEeCCCchHHHHHhcCC
Q 018506 44 QFESVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHVLDVYNGP 122 (355)
Q Consensus 44 ~~mkIgiIG~G-~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~aDiVi~~v~~~~~~~~vl~~~ 122 (355)
.-.+|.|||-+ .+|.+++..|.+++..|++++.. +.++.+.+++|||||.++..+.-+..
T Consensus 230 ~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~~----- 290 (364)
T PLN02616 230 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVRG----- 290 (364)
T ss_pred CCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCCH-----
Confidence 44789999755 58999999999999999998643 24677888999999999987744332
Q ss_pred CccccCCCCCCCeEEEEcCCCC
Q 018506 123 NGLLQGGNSVRPQLLIDSSTID 144 (355)
Q Consensus 123 ~~~l~~~~~~~~~ivi~~st~~ 144 (355)
.+++ +|.+|||...+.
T Consensus 291 -d~vK-----~GAvVIDVGIn~ 306 (364)
T PLN02616 291 -SWIK-----PGAVVIDVGINP 306 (364)
T ss_pred -HHcC-----CCCEEEeccccc
Confidence 2443 567999987654
No 491
>PRK12320 hypothetical protein; Provisional
Probab=94.02 E-value=0.087 Score=54.27 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=45.1
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC-----CC-CCHHHHhhcCCEEEEeCC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TK-ETPFEVAEASDVVITMLP 110 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~-----~~-~s~~e~~~~aDiVi~~v~ 110 (355)
|||.|.| +|.+|+.++..|.+.||+|++.+|++.... ..++. .. ....+++..+|+||-+.+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 6899998 799999999999999999999998754321 11111 11 123455668999998875
No 492
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.02 E-value=0.072 Score=48.55 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=42.2
Q ss_pred EEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCC--CCCCHHHHhhcCCEEEEeCC
Q 018506 49 GFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLP 110 (355)
Q Consensus 49 giIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--~~~s~~e~~~~aDiVi~~v~ 110 (355)
-|.| +|.+|+.+++.|.+.|++|++.+|+++..+.....+.. ......+.+.++|+||-+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 4565 69999999999999999999999988765432211111 01233445567888877764
No 493
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.00 E-value=0.078 Score=50.61 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=32.3
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCCh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 78 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~ 78 (355)
.+++|.|||.|.+|.+.|..|++.|++|+++++.+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 45789999999999999999999999999999765
No 494
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.12 Score=51.06 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=45.4
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh-H---HHHHHhCCCCC-CCCHHHHhhcCCEEEEeC
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-V---MKMFSDMGVPT-KETPFEVAEASDVVITML 109 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~-~---~~~l~~~g~~~-~~s~~e~~~~aDiVi~~v 109 (355)
..||+|+|+|.-|.+.++.|.+.|.+|+++|.++. . ..++.+.+... .....+.+.++|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 35899999999999999999999999999995322 2 22344322111 122235567899999873
No 495
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.98 E-value=0.16 Score=45.92 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHh
Q 018506 44 QFESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 86 (355)
Q Consensus 44 ~~mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~ 86 (355)
.++++-|-| .+.+|..+|+.|+++||+|+++.|+.++++++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 444566665 5899999999999999999999999999998875
No 496
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.97 E-value=0.18 Score=51.18 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=48.3
Q ss_pred CCCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChhH-HHHHHhCCCC-CCCC---HHHHhhcCCEEEEeCC
Q 018506 43 CQFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVP-TKET---PFEVAEASDVVITMLP 110 (355)
Q Consensus 43 ~~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~~-~~~l~~~g~~-~~~s---~~e~~~~aDiVi~~v~ 110 (355)
+.++||||||.|..|..++....+.|++|.++|.+++. ...+.+..+. ...+ +.++++.+|+|.....
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 56689999999999999999999999999999987652 2222222111 1233 3445678998876643
No 497
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.96 E-value=0.067 Score=53.64 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=28.4
Q ss_pred ceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 46 ESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 46 mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
.||+|||+|.-|.+.++.|.+.|+++++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 5899999999999999999999999999998765
No 498
>PRK09126 hypothetical protein; Provisional
Probab=93.95 E-value=0.075 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.8
Q ss_pred CceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 45 FESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 45 ~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
..+|.|||.|.-|.++|..|+++|++|+++++.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 35699999999999999999999999999998653
No 499
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=93.95 E-value=0.062 Score=49.43 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=38.1
Q ss_pred ceEEEEc-ccHHhHHHHHHHHHCCCcEEEEeCChhHHHHHHhCCCCCCCCHHHHhh--cCCEEEEeC
Q 018506 46 ESVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITML 109 (355)
Q Consensus 46 mkIgiIG-~G~mG~~ia~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~aDiVi~~v 109 (355)
|||-|+| .|.+|..+...|.+.|++|+.++|+.- .+.-.....+.++ ..|+||-|.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~--------dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDL--------DLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhc--------CCCCHHHHHHHHHHhCCCeEeccc
Confidence 8999999 699999999999999999999987611 1111122233333 589999885
No 500
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.94 E-value=0.11 Score=52.55 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCceEEEEcccHHhHHHHHHHHHCCCcEEEEeCChh
Q 018506 44 QFESVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 79 (355)
Q Consensus 44 ~~mkIgiIG~G~mG~~ia~~L~~~G~~V~v~dr~~~ 79 (355)
...+|.|||+|..|..+|..|.+.|++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 445799999999999999999999999999998763
Done!