BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018507
(355 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255576109|ref|XP_002528949.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223531595|gb|EEF33423.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 361
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/362 (78%), Positives = 318/362 (87%), Gaps = 9/362 (2%)
Query: 1 MQLSLPTSPSKLPTIFPF-HPSS---IPKTPQSPHHLSLQSHV----GPLNALKSAGFLS 52
MQ SLP S SK P+IFPF HP S + H Q+H+ GP +LKS G+LS
Sbjct: 1 MQTSLPISHSKFPSIFPFNHPISHKPTTTRTTTEHQYPFQTHIKKPIGP-TSLKSTGYLS 59
Query: 53 SISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTR 112
+I R I+EEEEYRKARAAV+RKGIDLEGY+IEG+SIGG ETC+IIPE KCAFDIGRCP+R
Sbjct: 60 AIGRVIEEEEEYRKARAAVIRKGIDLEGYSIEGLSIGGQETCLIIPEFKCAFDIGRCPSR 119
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
AI QNFVFITH HLDHIGGLPMYVASRGLYNLKPPT+FVPP IKEDVEKLF+IHRS+G V
Sbjct: 120 AIHQNFVFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLFDIHRSMGQV 179
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
ELNL+LVALDVGETYE+RN++VVRPF+T HVIPSQGYVIY +RKKLKKQY HLKGKQIEK
Sbjct: 180 ELNLELVALDVGETYELRNNVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYTHLKGKQIEK 239
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
LKKSGVEITDI+LSPEVAFTGDTT+E+ML+P NADALRAK+LITEATFLD+ SIEHA+Q
Sbjct: 240 LKKSGVEITDIMLSPEVAFTGDTTAEYMLDPHNADALRAKVLITEATFLDEGFSIEHARQ 299
Query: 293 HGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352
HGHTHL EIIENA+WIRNK+VLLTHFSSRY +EDIRQAVLKLQSKVSAKVVPLTEGFKS
Sbjct: 300 HGHTHLLEIIENAEWIRNKSVLLTHFSSRYTVEDIRQAVLKLQSKVSAKVVPLTEGFKST 359
Query: 353 YT 354
Y+
Sbjct: 360 YS 361
>gi|449481110|ref|XP_004156084.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/353 (76%), Positives = 313/353 (88%), Gaps = 6/353 (1%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+S+P SP + P +FPFH + TP+ PH ++LQSH+ P+N+ + +G LS+I
Sbjct: 1 MQISIPISPLRPPQVFPFH-QPLLHTPK-PHGVALQSHLNPVNSFRDSGLLSTIGV---- 54
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EEEYR+AR+ V RKG+DLEGY+IEG+S+GG ETCVIIPE KCAFDIGRCP+RAIQQNFVF
Sbjct: 55 EEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVF 114
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMYVASRGLY+L PPT+F+P SIKEDVEKL EIHR++G VEL++DLVA
Sbjct: 115 ITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVA 174
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYEMRN++V R F+THHVIPSQGYVIY +RKKLKKQY+HLKGKQIEKLKKSGVEI
Sbjct: 175 LDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEI 234
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
TD ILSPEVAFTGDTT +FML+PRNADALRAKILITEATFLD+ +SIEHA+QHGHTH+ E
Sbjct: 235 TDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFE 294
Query: 301 IIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
IIENA+WIRNKA+LLTHFSSRYHIEDIR+AV KLQS V+AKVVPLTEGFKS Y
Sbjct: 295 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNVTAKVVPLTEGFKSEY 347
>gi|224131708|ref|XP_002321158.1| predicted protein [Populus trichocarpa]
gi|222861931|gb|EEE99473.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/366 (75%), Positives = 318/366 (86%), Gaps = 12/366 (3%)
Query: 1 MQLSLP--TSPS--KLPTIFPF-HPSSIPKTPQSPHHLSLQS-HVGPLNA------LKSA 48
MQ+S+P +SP K+P++FPF H SI P L+ ++ H PL +K++
Sbjct: 1 MQISIPLFSSPPNPKIPSLFPFQHLPSIFHGKGKPTTLTTRNFHFLPLKIKNKPFIVKAS 60
Query: 49 GFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGR 108
FLS I RAI+EEE+YRKARAAV+RKGIDL GY IEG+SIGG ETC+IIPE KCAFDIGR
Sbjct: 61 SFLSEIGRAIEEEEDYRKARAAVIRKGIDLGGYAIEGLSIGGQETCIIIPEFKCAFDIGR 120
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168
CPTRAI QNFVFITH HLDHIGGLPMYVASRGLY+LKPPTIFVPP IK+DVEKLF+IHR+
Sbjct: 121 CPTRAIHQNFVFITHAHLDHIGGLPMYVASRGLYSLKPPTIFVPPCIKDDVEKLFDIHRA 180
Query: 169 LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
+G VELN DLVALDVGETYE+RND+VVRPF+T HVIPSQGYVIY +RKKLKKQYIHLKGK
Sbjct: 181 MGQVELNFDLVALDVGETYELRNDVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYIHLKGK 240
Query: 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE 288
QIEKLKKSGVEITDIILSPEVAFTGDTT+E+ML+PRNADALRAK+LITEATFLD++ + E
Sbjct: 241 QIEKLKKSGVEITDIILSPEVAFTGDTTAEYMLDPRNADALRAKVLITEATFLDEDFTTE 300
Query: 289 HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEG 348
HA+Q GHTHL EIIENAKWIR+KA+LLTHFSSRY IEDIR+AV KLQS+VSAKVVPLTEG
Sbjct: 301 HARQRGHTHLFEIIENAKWIRSKAILLTHFSSRYSIEDIREAVSKLQSRVSAKVVPLTEG 360
Query: 349 FKSVYT 354
FKS+Y+
Sbjct: 361 FKSMYS 366
>gi|449444739|ref|XP_004140131.1| PREDICTED: ribonuclease Z, chloroplastic-like [Cucumis sativus]
Length = 347
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 268/353 (75%), Positives = 312/353 (88%), Gaps = 6/353 (1%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+S+P SP + P +FPFH + TP+ P ++LQSH+ P+N+ + +G LS+I
Sbjct: 1 MQISIPISPLRPPQVFPFH-QPLLHTPKPPG-VALQSHLNPVNSFRDSGLLSTIGV---- 54
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EEEYR+AR+ V RKG+DLEGY+IEG+S+GG ETCVIIPE KCAFDIGRCP+RAIQQNFVF
Sbjct: 55 EEEYRRARSQVNRKGVDLEGYSIEGISVGGQETCVIIPEFKCAFDIGRCPSRAIQQNFVF 114
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMYVASRGLY+L PPT+F+P SIKEDVEKL EIHR++G VEL++DLVA
Sbjct: 115 ITHAHLDHIGGLPMYVASRGLYSLSPPTVFLPASIKEDVEKLLEIHRNMGQVELDVDLVA 174
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYEMRN++V R F+THHVIPSQGYVIY +RKKLKKQY+HLKGKQIEKLKKSGVEI
Sbjct: 175 LDVGETYEMRNNLVCRAFETHHVIPSQGYVIYSVRKKLKKQYMHLKGKQIEKLKKSGVEI 234
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
TD ILSPEVAFTGDTT +FML+PRNADALRAKILITEATFLD+ +SIEHA+QHGHTH+ E
Sbjct: 235 TDTILSPEVAFTGDTTPDFMLDPRNADALRAKILITEATFLDEAVSIEHARQHGHTHIFE 294
Query: 301 IIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
IIENA+WIRNKA+LLTHFSSRYHIEDIR+AV KLQS ++AKVVPLTEGFKS Y
Sbjct: 295 IIENAQWIRNKAILLTHFSSRYHIEDIRKAVSKLQSNLTAKVVPLTEGFKSEY 347
>gi|225447197|ref|XP_002277241.1| PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera]
gi|297739240|emb|CBI28891.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/360 (76%), Positives = 311/360 (86%), Gaps = 12/360 (3%)
Query: 1 MQLSLPTSPSKLPTI------FPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSI 54
MQ+SLP S SK+P + P P +IPK P +++ S + K +G+LS I
Sbjct: 1 MQISLPFSTSKVPYLSPLPNPTPQPPLTIPK-PHPKSYITAHS-----SRPKGSGYLSLI 54
Query: 55 SRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI 114
RAI+EEEEYRKARA V R G+DLEGY+IEG+SIGGHETCVIIPELK AFDIGRCP+RAI
Sbjct: 55 GRAIEEEEEYRKARAEVARNGVDLEGYSIEGISIGGHETCVIIPELKSAFDIGRCPSRAI 114
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
QQNF+FITH HLDHIGGLPMYVA+RGLYNLKPPTIFVPP IKEDVEKLF+IHR+L VEL
Sbjct: 115 QQNFLFITHAHLDHIGGLPMYVATRGLYNLKPPTIFVPPCIKEDVEKLFDIHRALSQVEL 174
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
LDLVALDVGETYEMRN++VVRPFKTHHVIPSQGYVIY +RKKLKKQYIHLKGKQIEKLK
Sbjct: 175 KLDLVALDVGETYEMRNNLVVRPFKTHHVIPSQGYVIYTVRKKLKKQYIHLKGKQIEKLK 234
Query: 235 KSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294
SG+EITD ILSPEVAFTGDT S+FML PRNADALRAK+LITEATFLD+ +SI+HA++HG
Sbjct: 235 NSGIEITDTILSPEVAFTGDTRSDFMLEPRNADALRAKVLITEATFLDNGISIDHAREHG 294
Query: 295 HTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
HTHL EIIENA+WIRNKAVLLTHFSSRYHIEDIR+AV KLQSKVSA+VVPL EGFKS+Y
Sbjct: 295 HTHLFEIIENAEWIRNKAVLLTHFSSRYHIEDIRKAVSKLQSKVSARVVPLMEGFKSMYA 354
>gi|297831528|ref|XP_002883646.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
gi|297329486|gb|EFH59905.1| hypothetical protein ARALYDRAFT_480092 [Arabidopsis lyrata subsp.
lyrata]
Length = 353
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/358 (75%), Positives = 311/358 (86%), Gaps = 9/358 (2%)
Query: 1 MQLS-LPTSPSKLPTIFPFHPSSIPKTPQSPHHLS--LQSHVGP-LNALKSAGFLSSISR 56
MQLS P SPSK IFPF P P H L+ +QSH ++ +K +G+ SSISR
Sbjct: 1 MQLSSFPISPSK---IFPFTKYHAP--PVIIHQLAAQIQSHRSNFVSPVKVSGYFSSISR 55
Query: 57 AIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ 116
AI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQQ
Sbjct: 56 AIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQ 115
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN+
Sbjct: 116 KFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNV 175
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+L+ LDVGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KKS
Sbjct: 176 ELIPLDVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKS 235
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
GVEITD ILSPE+AFTGDTT+E+ML+PRNADALR+K+LITEATFLD+ S EHAQ GHT
Sbjct: 236 GVEITDTILSPEIAFTGDTTAEYMLDPRNADALRSKVLITEATFLDESFSTEHAQALGHT 295
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
H+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 HISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 353
>gi|357493079|ref|XP_003616828.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518163|gb|AES99786.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 357
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/354 (74%), Positives = 303/354 (85%), Gaps = 9/354 (2%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+ L K P IFPFH +IP Q LS P N+LK +G+LS IS+AID
Sbjct: 13 MQIPLTNPTFKPPQIFPFH-HTIPSPKQ---QLSF-----PTNSLKGSGYLSEISKAIDY 63
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EE+YR A++ V RKG+DLEGY+IEGVSIGGHETC+IIPE KCAFDIGRCPTRAI QNFVF
Sbjct: 64 EEQYRVAKSQVQRKGLDLEGYSIEGVSIGGHETCIIIPEFKCAFDIGRCPTRAIHQNFVF 123
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMY+ SRGLYNLKPPT+FVPP IK+DV+KL ++H++LG VELN +LVA
Sbjct: 124 ITHAHLDHIGGLPMYIGSRGLYNLKPPTVFVPPCIKDDVQKLLDVHKTLGQVELNCELVA 183
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
LDVGETYE+RND+VVRPF+T HVIPSQGY++Y +RKKL+KQY HL GKQIEKLKKSGVEI
Sbjct: 184 LDVGETYEIRNDLVVRPFRTQHVIPSQGYIVYSIRKKLRKQYSHLNGKQIEKLKKSGVEI 243
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
TD ILSPEVAFTGDTTS+FML+P NADALRAK+LITEATFLDD ++EHA+QHGHTH+SE
Sbjct: 244 TDTILSPEVAFTGDTTSDFMLDPLNADALRAKVLITEATFLDDSTTVEHARQHGHTHISE 303
Query: 301 IIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
+IENA+WIRNK VLLTHFSSRY+IEDIRQA +LQSK SAKVVPLTEGFKS YT
Sbjct: 304 LIENAQWIRNKTVLLTHFSSRYNIEDIRQAASELQSKTSAKVVPLTEGFKSQYT 357
>gi|356501243|ref|XP_003519435.1| PREDICTED: ribonuclease Z, chloroplastic-like [Glycine max]
Length = 354
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/356 (74%), Positives = 306/356 (85%), Gaps = 4/356 (1%)
Query: 1 MQLSLPTSPSKLPTIFPF-HPSSIPKTPQSPHHLSLQSHVGPLNALK-SAGFLSSISRAI 58
MQ+SL K P +FP HP PK P H +S QSHV N LK S+G+LS IS+AI
Sbjct: 1 MQISLSNLAFKTPQLFPIQHPIFPPKAPLYHHQVSTQSHVN--NVLKGSSGYLSEISKAI 58
Query: 59 DEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNF 118
D EE+YR AR+ V RK +DLEGY+IEG+S+GG ETC+IIPE KC FDIGRCP+RAIQQNF
Sbjct: 59 DHEEQYRLARSQVNRKVLDLEGYSIEGLSVGGQETCIIIPEFKCTFDIGRCPSRAIQQNF 118
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH HLDHIGGLPMYVASRGL+NLKPPT+FVPP IKEDVEKL +IHR++G VELN ++
Sbjct: 119 LFITHAHLDHIGGLPMYVASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEV 178
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV 238
VALDVGETYE+RN++VVRPF+T HVIPSQGYV+Y +RKKL+KQY HL GKQIEKLKKSG+
Sbjct: 179 VALDVGETYEIRNNLVVRPFRTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGI 238
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
EITD+ILSPEVAFTGDTTS+FML+P NADALRAKILITEATFLDD SI+HA+QHGHTHL
Sbjct: 239 EITDMILSPEVAFTGDTTSDFMLDPCNADALRAKILITEATFLDDSFSIDHARQHGHTHL 298
Query: 299 SEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
EII NA+WIRNKAVLLTHFS RY IEDIRQA KLQS++SAKVVPLTEGFKS+Y+
Sbjct: 299 FEIIANAQWIRNKAVLLTHFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGFKSMYS 354
>gi|363806948|ref|NP_001242565.1| uncharacterized protein LOC100807082 [Glycine max]
gi|255636804|gb|ACU18735.1| unknown [Glycine max]
Length = 353
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/355 (73%), Positives = 303/355 (85%), Gaps = 3/355 (0%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALK-SAGFLSSISRAID 59
MQ+SL K P +FP H P P H +S QSHV N LK S+G+LS IS+ ID
Sbjct: 1 MQISLSDLAFKTPQLFPIHHPIFPPKPPLNHQVSTQSHVS--NVLKGSSGYLSEISKVID 58
Query: 60 EEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFV 119
EE+YR AR+ V RK +DLEGY+IEG+S+GG ETC+IIPE KC+FDIGRCP+RAIQQNF+
Sbjct: 59 HEEQYRVARSQVSRKVLDLEGYSIEGLSVGGQETCIIIPEFKCSFDIGRCPSRAIQQNFL 118
Query: 120 FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
FITH HLDHIGGLPMYVASRGL+NLKPPT+FVPP IKEDVEKL +IHR++G VELN ++V
Sbjct: 119 FITHAHLDHIGGLPMYVASRGLFNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELNAEVV 178
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
ALDVGETYE+RN++VVRPFKT HVIPSQGYV+Y +RKKL+KQY HL GKQIEKLKKSGVE
Sbjct: 179 ALDVGETYEIRNNLVVRPFKTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGVE 238
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
ITD++LSPEVAFTGDTTS+FML+P NADALRAKI ITEATFLDD SI+HA+QHGHTHL
Sbjct: 239 ITDMMLSPEVAFTGDTTSDFMLDPCNADALRAKIFITEATFLDDSFSIDHARQHGHTHLF 298
Query: 300 EIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
EII NA+WIRN+AVLLTHFS RY IEDIRQA KLQS++SAKVVPLTEGFKS+Y+
Sbjct: 299 EIIANAQWIRNEAVLLTHFSPRYTIEDIRQAASKLQSRLSAKVVPLTEGFKSMYS 353
>gi|22325471|ref|NP_178532.2| Ribonuclease Z [Arabidopsis thaliana]
gi|41017757|sp|Q8L633.1|RNZC_ARATH RecName: Full=Ribonuclease Z, chloroplastic; Short=RNase Z;
AltName: Full=Zinc phosphodiesterase CPZ; AltName:
Full=tRNA 3 endonuclease; AltName: Full=tRNase Z; Flags:
Precursor
gi|20466197|gb|AAM20416.1| unknown protein [Arabidopsis thaliana]
gi|24899839|gb|AAN65134.1| unknown protein [Arabidopsis thaliana]
gi|330250749|gb|AEC05843.1| Ribonuclease Z [Arabidopsis thaliana]
Length = 354
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/359 (74%), Positives = 306/359 (85%), Gaps = 10/359 (2%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
TH+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>gi|20975607|emb|CAD22099.1| RNase Z [Arabidopsis thaliana]
Length = 354
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/359 (72%), Positives = 304/359 (84%), Gaps = 10/359 (2%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDI RCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIVRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKG+QIE++KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGRQIERIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEIT ILSPE+AFTG+TTSE+MLNPRNA+ALRAK+LI+EATFLD+ S EHAQ GH
Sbjct: 236 SGVEITYAILSPEIAFTGNTTSEYMLNPRNANALRAKVLISEATFLDESFSTEHAQALGH 295
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
TH+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>gi|297727071|ref|NP_001175899.1| Os09g0482680 [Oryza sativa Japonica Group]
gi|215697960|dbj|BAG92124.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255678994|dbj|BAH94627.1| Os09g0482680 [Oryza sativa Japonica Group]
Length = 365
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 263/304 (86%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVHRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L ++LVALD+GET+E+RND+V RPF+THH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLKVELVALDLGETFEIRNDLVARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 240
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 241 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQIDVDH 300
Query: 290 AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A++HGH HLSEI+E+++W RNKA++LTHFS+RY +EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 301 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
Query: 350 KSVY 353
KS Y
Sbjct: 361 KSDY 364
>gi|125564150|gb|EAZ09530.1| hypothetical protein OsI_31806 [Oryza sativa Indica Group]
Length = 365
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 211/304 (69%), Positives = 263/304 (86%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L ++LVALD+GET+E+RND+V RPF+THH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLKVELVALDLGETFEIRNDLVARPFETHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 240
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+P+NADALRAK+LITEATFLDD++ ++H
Sbjct: 241 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPQNADALRAKVLITEATFLDDQIDVDH 300
Query: 290 AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A++HGH HLSEI+E+++W RNKA++LTHFS+RY +EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 301 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 360
Query: 350 KSVY 353
KS Y
Sbjct: 361 KSDY 364
>gi|195656759|gb|ACG47847.1| nuclear ribonuclease Z [Zea mays]
Length = 357
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 209/308 (67%), Positives = 262/308 (85%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPL 345
+EHA++HGH HLSEI+E+ +W RN+ ++LTHFS+RY +EDIRQAV +LQ K+++KVV L
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSKVVAL 348
Query: 346 TEGFKSVY 353
TEGFKS Y
Sbjct: 349 TEGFKSDY 356
>gi|357159012|ref|XP_003578311.1| PREDICTED: ribonuclease Z, chloroplastic-like [Brachypodium
distachyon]
Length = 359
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 207/305 (67%), Positives = 264/305 (86%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFDIGR
Sbjct: 55 LLSVLDRALTDEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFDIGRG 114
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A++Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP IK+DVE+L +IHR +
Sbjct: 115 PLFAVRQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIKDDVEELLQIHRRM 174
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
+EL ++LVALD+GETYE+RND+V RPF+THH +PSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 175 SRIELEVELVALDLGETYELRNDLVARPFQTHHTVPSQGYVIYSVRRKLKKQYAHLKGTQ 234
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 235 IVKLKQSGSEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQVDVDH 294
Query: 290 AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A++HGH HLSEI+E+++W RN+ V+LTHFS+RY +EDIRQAV ++Q K+ +KVV LTEGF
Sbjct: 295 AREHGHMHLSEIMEHSQWFRNETVILTHFSNRYSLEDIRQAVSRIQPKLLSKVVALTEGF 354
Query: 350 KSVYT 354
KS Y+
Sbjct: 355 KSEYS 359
>gi|242049624|ref|XP_002462556.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
gi|241925933|gb|EER99077.1| hypothetical protein SORBIDRAFT_02g028070 [Sorghum bicolor]
Length = 359
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 203/300 (67%), Positives = 258/300 (86%)
Query: 54 ISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRA 113
+ RA+ +EEEYR+ARA V RKG+++EGY +EG+S+GGHETCV +P L AFDIGR P A
Sbjct: 59 LDRALADEEEYRRARAQVQRKGVEVEGYAVEGISVGGHETCVTVPSLNVAFDIGRGPQFA 118
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP IK+DVE L ++HR + +E
Sbjct: 119 VSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIKDDVEDLLQVHRRMSQIE 178
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
L ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HLKG QI KL
Sbjct: 179 LKVELVALDLGETYEIRNDLVARPFQTYHAIPSQGYVIYSIRRKLKKQYAHLKGSQIMKL 238
Query: 234 KKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD + +EHA++H
Sbjct: 239 KQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREH 298
Query: 294 GHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
GH HLSEI+E+++W RN+ ++LTHFS+RY +EDI QAV +LQ K+++K+V LTEGFKS Y
Sbjct: 299 GHMHLSEIMEHSQWFRNETIVLTHFSNRYSLEDIHQAVSRLQPKLNSKIVALTEGFKSEY 358
>gi|4587599|gb|AAD25827.1| hypothetical protein [Arabidopsis thaliana]
Length = 356
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/319 (69%), Positives = 262/319 (82%), Gaps = 12/319 (3%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLSEIIE--NAKWIRNKA 312
TH+S++ + + +++ K+
Sbjct: 296 THISQVCDTIHQSYVKKKS 314
>gi|414885983|tpg|DAA61997.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 388
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/339 (61%), Positives = 262/339 (77%), Gaps = 31/339 (9%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ------------------ 207
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQ
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQVLLLRASRHLFFVICHDL 228
Query: 208 -------------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
GYVIY +R+KLKKQY HLKG QI KLK+SG EITD IL PEVAFTGD
Sbjct: 229 MPIDIIHPMNGVKGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTGD 288
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T S+F+L+PRNADALRAK+LITEATFLDD + +EHA++HGH HLSEI+E+ +W RN+ ++
Sbjct: 289 TKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETIV 348
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
LTHFS+RY +EDIRQAV +LQ K+++KVV LTEGFKS Y
Sbjct: 349 LTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGFKSDY 387
>gi|414885985|tpg|DAA61999.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 442
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/309 (65%), Positives = 257/309 (83%), Gaps = 1/309 (0%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPL 345
+EHA++HGH HLSEI+E+ +W RN+ ++LTHFS+RY +EDIRQAV +LQ K+++K P+
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSKGHPI 348
Query: 346 T-EGFKSVY 353
E V+
Sbjct: 349 NGEALPDVW 357
>gi|219362919|ref|NP_001136933.1| nuclear ribonuclease Z [Zea mays]
gi|194697676|gb|ACF82922.1| unknown [Zea mays]
gi|414885986|tpg|DAA62000.1| TPA: nuclear ribonuclease Z [Zea mays]
Length = 492
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 252/296 (85%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
KG QI KLK+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD +
Sbjct: 229 KGSQIMKLKQSGTEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDHV 288
Query: 286 SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
+EHA++HGH HLSEI+E+ +W RN+ ++LTHFS+RY +EDIRQAV +LQ K+++K
Sbjct: 289 DVEHAREHGHMHLSEIMEHFQWFRNETIVLTHFSNRYSLEDIRQAVSRLQPKLNSK 344
>gi|222641796|gb|EEE69928.1| hypothetical protein OsJ_29793 [Oryza sativa Japonica Group]
Length = 357
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/304 (64%), Positives = 244/304 (80%), Gaps = 8/304 (2%)
Query: 50 FLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRC 109
LS + RA+ +EEEYR+ARA V RKG+++EGY IEGVS+GGHETCV +P L AFDIGR
Sbjct: 61 LLSVLDRAMADEEEYRRARAQVHRKGVEVEGYAIEGVSVGGHETCVTVPSLNVAFDIGRG 120
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPP +FVPP IK+DVE L +IHR +
Sbjct: 121 PLFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPVVFVPPCIKDDVEDLLQIHRRM 180
Query: 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ 229
V+L G + ++ + HH IPSQGYVIY +R+KLKKQY HLKG Q
Sbjct: 181 SQVDLK--------GRHLKYVMTLLPDHLRLHHAIPSQGYVIYSVRRKLKKQYAHLKGNQ 232
Query: 230 IEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEH 289
I K+K+SG EITD IL PEVAFTGDT S+F+L+PRNADALRAK+LITEATFLDD++ ++H
Sbjct: 233 IMKMKQSGAEITDTILYPEVAFTGDTKSDFILDPRNADALRAKVLITEATFLDDQIDVDH 292
Query: 290 AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A++HGH HLSEI+E+++W RNKA++LTHFS+RY +EDIRQAV KLQSK+S+KVV LTEGF
Sbjct: 293 AREHGHMHLSEIMEHSQWFRNKAIVLTHFSNRYSLEDIRQAVSKLQSKLSSKVVALTEGF 352
Query: 350 KSVY 353
KS Y
Sbjct: 353 KSDY 356
>gi|116785148|gb|ABK23610.1| unknown [Picea sitchensis]
Length = 291
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/276 (62%), Positives = 225/276 (81%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+G + GY+IEG+SIGG ETCVI+P L AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 16 RGRQIAGYSIEGLSIGGQETCVIVPTLNMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLP 75
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLYN++PPTIFVP IKE VEKLFE+HR++ + ELN +LV L+VGE Y++R D+
Sbjct: 76 MYVATRGLYNMRPPTIFVPAEIKEHVEKLFEVHRAMDHSELNHNLVGLNVGEEYQIRKDL 135
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+VRPFKT+HVIPSQGY+IY +++KLKK+Y+ I+ LK SGVEITD ++SPE+AFTG
Sbjct: 136 LVRPFKTYHVIPSQGYIIYSVKQKLKKEYLGRSSDDIKNLKFSGVEITDTVISPEIAFTG 195
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT +EF+++P N DA+RAK+LI E TF+DD M+IEHA+++GHTHLSE+ A +NKA+
Sbjct: 196 DTMAEFIVDPNNVDAMRAKLLIMETTFVDDAMTIEHAREYGHTHLSEVAAFADRFQNKAI 255
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
LL HFS+RY IE+I+ AV KL + +V LTEGF
Sbjct: 256 LLIHFSARYRIEEIKAAVAKLPQTLFGRVFTLTEGF 291
>gi|226492918|ref|NP_001152148.1| LOC100285786 [Zea mays]
gi|195653199|gb|ACG46067.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 163/274 (59%), Positives = 220/274 (80%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AFTGDT
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFTGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL EI A ++NKA+LL
Sbjct: 209 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEITSQADKLQNKAILL 268
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY E+I A+ KL ++V L EGF
Sbjct: 269 IHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302
>gi|30699037|ref|NP_177608.2| nuclear ribonuclease Z [Arabidopsis thaliana]
gi|88984765|sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20975609|emb|CAD22100.1| RNase Z [Arabidopsis thaliana]
gi|90962972|gb|ABE02410.1| At1g74700 [Arabidopsis thaliana]
gi|332197502|gb|AEE35623.1| nuclear ribonuclease Z [Arabidopsis thaliana]
Length = 280
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/277 (60%), Positives = 218/277 (78%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAFT
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
GDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SEI+ +A+ NKA
Sbjct: 184 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENKA 243
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+LL HFS+RY +++I AV L + +V LT+GF
Sbjct: 244 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
>gi|194699324|gb|ACF83746.1| unknown [Zea mays]
gi|413925893|gb|AFW65825.1| nuclear ribonuclease Z [Zea mays]
Length = 302
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 220/274 (80%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AF+GDT
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFSGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL EI A ++NKA+LL
Sbjct: 209 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLFEITSQADKLQNKAILL 268
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY E+I A+ KL ++V L EGF
Sbjct: 269 IHFSARYTTEEIDAAINKLPPSFRSRVYALKEGF 302
>gi|297839343|ref|XP_002887553.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
gi|297333394|gb|EFH63812.1| hypothetical protein ARALYDRAFT_476606 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 166/277 (59%), Positives = 217/277 (78%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPKSIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT+HVI SQGYV+Y + KLK++YI L G +I+ LK SGVEITD I +PEVAFT
Sbjct: 124 LKVKAFKTYHVIQSQGYVVYSTKHKLKQEYIGLSGNEIKNLKASGVEITDSITTPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
GDTT++F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH HLSEI+ +A NKA
Sbjct: 184 GDTTADFVVDESNADALKAKVLVMESTFLDDSVSVEHARDYGHIHLSEIVNHAAKFENKA 243
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+LL HFS+RY +++I AV L + +V LT+GF
Sbjct: 244 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
>gi|12324792|gb|AAG52354.1|AC011765_6 unknown protein; 121665-123450 [Arabidopsis thaliana]
Length = 281
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 167/278 (60%), Positives = 218/278 (78%), Gaps = 1/278 (0%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG-ETYEMRN 191
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+G E + +R
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRK 123
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAF 251
D+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAF
Sbjct: 124 DLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF 183
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
TGDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SEI+ +A+ NK
Sbjct: 184 TGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENK 243
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A+LL HFS+RY +++I AV L + +V LT+GF
Sbjct: 244 AILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 281
>gi|356575345|ref|XP_003555802.1| PREDICTED: nuclear ribonuclease Z-like [Glycine max]
Length = 279
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 161/276 (58%), Positives = 216/276 (78%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K +++EGYT+ G+SIGGHETCVI P LK AFDIGRCP RA+ QNF+ ITH H+DHIGGLP
Sbjct: 4 KDLEIEGYTVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQNFLLITHAHMDHIGGLP 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +L+ LDVGE + +R D+
Sbjct: 64 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFYLRKDL 123
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V+ F+T+HVIPSQGY++Y ++KLK +Y+ L G +I+ LK SGVEIT + PE+AFTG
Sbjct: 124 KVKAFRTYHVIPSQGYILYSEKQKLKPEYVGLSGNEIKNLKSSGVEITYTLTEPEIAFTG 183
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S+F+++ N D LRA+IL+ E TF+++ +++EHA+ +GHTHLSEII A+ ++N+A+
Sbjct: 184 DTMSDFIVDENNTDVLRARILVLECTFVNNSITVEHARDYGHTHLSEIISYAESLQNRAI 243
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
LL HFS+RY +E+I+ AV L +S + LTEGF
Sbjct: 244 LLIHFSARYTVEEIQHAVSALPPSLSGRTFALTEGF 279
>gi|297734015|emb|CBI15262.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 159/276 (57%), Positives = 220/276 (79%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY +EG+SIGG ETC+I+P LK AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 55 KGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIGGLP 114
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPP I VP +IKE+VE LF++HR++ EL +L+ L+VGE + +R D+
Sbjct: 115 MYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLRKDL 174
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVIPSQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT + +PE+AFTG
Sbjct: 175 KVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIAFTG 234
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S+F+L+ N DAL A++LI E+TF+D+ +++EHA+++GHTHLSEI+ A +NKA+
Sbjct: 235 DTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQNKAI 294
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
LL HFS+RY ++I++AV L + +V LTEGF
Sbjct: 295 LLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 330
>gi|388522475|gb|AFK49299.1| unknown [Medicago truncatula]
Length = 335
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 159/276 (57%), Positives = 217/276 (78%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +EG+SIGGHETCV+ + AFDIGRCP RA+ +F+ I+H H+DHIGGLP
Sbjct: 60 KGLNIEGYQVEGLSIGGHETCVVFSHFRVAFDIGRCPPRAVSMDFLLISHAHMDHIGGLP 119
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +LV LDVGE + +R+D+
Sbjct: 120 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLVGLDVGEEFSLRHDL 179
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V+ F+T+HVIPSQGY++Y ++ KLK +YI L +I+KLK SGVEIT+ + PE+AFTG
Sbjct: 180 KVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSSDEIKKLKFSGVEITNTLKEPEIAFTG 239
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S+F+++ N D LRAK+L+ E+TF+++EM++EHA+ +GHTHL EII A ++NKA+
Sbjct: 240 DTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHLFEIISYADRLQNKAI 299
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
LL HFS+RY +E+I+QAV L ++ + LTEGF
Sbjct: 300 LLIHFSARYTVEEIQQAVGALPPPLAGRTFALTEGF 335
>gi|225456689|ref|XP_002273058.1| PREDICTED: nuclear ribonuclease Z isoform 1 [Vitis vinifera]
Length = 290
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 159/276 (57%), Positives = 220/276 (79%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY +EG+SIGG ETC+I+P LK AFDIGRCP RAI Q+F+FI+HGH+DHIGGLP
Sbjct: 15 KGIQIEGYPVEGLSIGGQETCIILPSLKLAFDIGRCPQRAISQDFLFISHGHMDHIGGLP 74
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPP I VP +IKE+VE LF++HR++ EL +L+ L+VGE + +R D+
Sbjct: 75 MYVATRGLYRMKPPIIIVPKAIKENVEMLFQVHRAMDESELKHNLIGLNVGEEFYLRKDL 134
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVIPSQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT + +PE+AFTG
Sbjct: 135 KVRAFRTYHVIPSQGYVVYSVKQKLKQEYVGLPGNEIKNLKLSGVEITYTMTTPEIAFTG 194
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S+F+L+ N DAL A++LI E+TF+D+ +++EHA+++GHTHLSEI+ A +NKA+
Sbjct: 195 DTMSDFILDHTNVDALMARVLIMESTFVDNTVTVEHAREYGHTHLSEIVSYADRFQNKAI 254
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
LL HFS+RY ++I++AV L + +V LTEGF
Sbjct: 255 LLIHFSARYTTDEIQEAVSALPPPLGGRVFALTEGF 290
>gi|242064700|ref|XP_002453639.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
gi|241933470|gb|EES06615.1| hypothetical protein SORBIDRAFT_04g009740 [Sorghum bicolor]
Length = 315
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 161/281 (57%), Positives = 217/281 (77%), Gaps = 7/281 (2%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 35 MEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 94
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP ++E VE+LFE+HR++ ELN +LV L+VGE YE R D+ V
Sbjct: 95 VATRGLFRLRPPTIFVPACLRELVERLFEVHRAIDQSELNHNLVPLEVGEEYEFRRDLKV 154
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
R F+T+H IPSQGYVIY +++KLK+++I L G +I+ LK SGVEIT+ + +PE+AFTGDT
Sbjct: 155 RAFRTYHTIPSQGYVIYSVKQKLKQEFIGLPGSEIKHLKLSGVEITNTVSTPEIAFTGDT 214
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE-------IIENAKWI 308
T++F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL E I + +
Sbjct: 215 TADFILDPDNADVLQAKILVVESTFLDDSISVEHAREYGHTHLYEYLPLETQIASQSDKL 274
Query: 309 RNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
NKA+LL HFS+RY E+I A+ +L ++V L EGF
Sbjct: 275 GNKAILLIHFSARYTTEEIDAAINRLPPSFRSRVYALKEGF 315
>gi|302764956|ref|XP_002965899.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
gi|300166713|gb|EFJ33319.1| hypothetical protein SELMODRAFT_167717 [Selaginella moellendorffii]
Length = 299
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 155/274 (56%), Positives = 216/274 (78%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
++ G+ +EG+SIGGHETCVI+P +K AFDIGRCP RAI Q+F+FI+H H+DHIGG+ MY
Sbjct: 25 VNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLFISHSHMDHIGGIAMY 84
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY++KPPTIFVP SIK VEKLF+++R L EL++ LV LD+GE Y++ +V
Sbjct: 85 VATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVGLDIGEEYDLGKGYIV 144
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+PFKT+HVIPSQGY+IY ++ KLK +Y+ L G +I+ L+ SGVE+T++ SPEVAFTGDT
Sbjct: 145 KPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEVTNVTRSPEVAFTGDT 204
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
T +F+ + NAD LRAK+LI EATF++D ++EHA+++GH+HLSEI+ + +NKA+LL
Sbjct: 205 TVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSEIVALSDKFQNKAILL 264
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY ++I +A+ KL + ++ LTEGF
Sbjct: 265 IHFSARYSKQEIIEAIEKLPETLKSRTYALTEGF 298
>gi|357140188|ref|XP_003571652.1| PREDICTED: nuclear ribonuclease Z-like [Brachypodium distachyon]
Length = 306
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 157/273 (57%), Positives = 215/273 (78%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 33 LEIEGYPVEGISIGGQETCVIFPTLSLAFDIGRCPQRAVSQDFLFISHAHLDHIGGLPMY 92
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ EL LV L+VGE YE+R D+ V
Sbjct: 93 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELKHTLVPLEVGEEYELRRDLKV 152
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+HVIPSQGYVIY +++KLK++++ L G +I++LK S VEIT+ + PE+AFTGDT
Sbjct: 153 KAFKTYHVIPSQGYVIYSVKQKLKQEFLGLPGSEIKRLKLSDVEITNTVTVPEIAFTGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
S+F+L+P NAD L+AKIL+ E+TFLDD +S+EHA+++GHTHL EI + ++N+A+LL
Sbjct: 213 MSDFILDPDNADVLKAKILVVESTFLDDSVSVEHAREYGHTHLFEIASQSDKLQNRAILL 272
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEG 348
HFS+RY E+I A+ +L ++V L EG
Sbjct: 273 IHFSARYTTEEIDAAISRLPPSFRSRVYALKEG 305
>gi|5882718|gb|AAD55271.1|AC008263_2 ESTs gb|AA067482 and gb|AI100542 come from this gene [Arabidopsis
thaliana]
Length = 290
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 167/287 (58%), Positives = 218/287 (75%), Gaps = 10/287 (3%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRN 191
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+ GE + +R
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGGEEFIIRK 123
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAF 251
D+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAF
Sbjct: 124 DLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF 183
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE---------II 302
TGDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SE I+
Sbjct: 184 TGDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEKISYILKLQIV 243
Query: 303 ENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+A+ NKA+LL HFS+RY +++I AV L + +V LT+GF
Sbjct: 244 NHAEKFENKAILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 290
>gi|224124030|ref|XP_002330087.1| predicted protein [Populus trichocarpa]
gi|222871221|gb|EEF08352.1| predicted protein [Populus trichocarpa]
Length = 272
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 155/272 (56%), Positives = 212/272 (77%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+EGY +EG+SIGGHETC+I L AFDIGRCP RAI Q+F+FI+H H+DHIGGLPMYVA
Sbjct: 1 IEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 60
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+RGLY +KPPT+ VP IKE VE+LFE+HR L EL L+ALDVG+ + +R D+ VR
Sbjct: 61 TRGLYRMKPPTVVVPTCIKETVEQLFEVHRRLDGSELKHHLIALDVGQEFYVRKDLKVRA 120
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
FKT+H I SQGYV+Y +++KLK++Y+ L G +I+ LK SGVEIT+ + SPE+AFTGDT S
Sbjct: 121 FKTYHAIQSQGYVVYSVKQKLKQEYLGLSGNEIKSLKSSGVEITNTVTSPEIAFTGDTMS 180
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
+F+++ N D LRAK+L+ E+TF+D +++EHA+ +GHTHL EI+ A +NKA+LL H
Sbjct: 181 DFIIDETNIDVLRAKVLVMESTFVDGTVTVEHARDYGHTHLFEIVNYADKFQNKAILLIH 240
Query: 318 FSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
FS+RY +++I++AV +L ++ +V LTEGF
Sbjct: 241 FSARYTVKEIQEAVQRLPQPLAGRVFALTEGF 272
>gi|115445001|ref|NP_001046280.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|49387940|dbj|BAD25038.1| putative nuclear ribonuclease Z [Oryza sativa Japonica Group]
gi|113535811|dbj|BAF08194.1| Os02g0214300 [Oryza sativa Japonica Group]
gi|125538607|gb|EAY85002.1| hypothetical protein OsI_06362 [Oryza sativa Indica Group]
Length = 302
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 155/274 (56%), Positives = 213/274 (77%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ +EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q F+FI+H HLDHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY +PPTIF+P +++ VE+LFE+HRS+ EL+ +LV L++G+ +E+R D+ V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+H IPSQGYVIY +++KLK +Y+ L G +I++LK SGVEIT+ + PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQGYVIYTVKQKLKPEYLGLPGSEIKQLKLSGVEITNTLTVPEIAFTGDT 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
++F+L+P NAD L+AKIL+ E+TF+DD ++IEHA+++GHTHL EI+ + NKA+LL
Sbjct: 209 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILL 268
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY E+I A+ KL ++V L EGF
Sbjct: 269 IHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 302
>gi|302802780|ref|XP_002983144.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
gi|300149297|gb|EFJ15953.1| hypothetical protein SELMODRAFT_117445 [Selaginella moellendorffii]
Length = 308
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 155/283 (54%), Positives = 216/283 (76%), Gaps = 9/283 (3%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
++ G+ +EG+SIGGHETCVI+P +K AFDIGRCP RAI Q+F+FI+H H+DHIGG+ MY
Sbjct: 25 VNAGGFAVEGISIGGHETCVIVPSMKIAFDIGRCPQRAISQDFLFISHSHMDHIGGIAMY 84
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY++KPPTIFVP SIK VEKLF+++R L EL++ LV LD+GE Y++ +V
Sbjct: 85 VATRGLYSMKPPTIFVPSSIKATVEKLFDVYRELDQAELSMKLVGLDIGEEYDLGKGYIV 144
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+PFKT+HVIPSQGY+IY ++ KLK +Y+ L G +I+ L+ SGVE+T++ SPEVAFTGDT
Sbjct: 145 KPFKTYHVIPSQGYIIYAVKNKLKPEYVGLPGDKIKSLRFSGVEVTNVTRSPEVAFTGDT 204
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE---------IIENAK 306
T +F+ + NAD LRAK+LI EATF++D ++EHA+++GH+HLSE I+ +
Sbjct: 205 TVDFIGDENNADVLRAKLLIMEATFINDSGTVEHAREYGHSHLSEAKLSNVLFQIVALSD 264
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+NKA+LL HFS+RY ++I +A+ KL + ++ LTEGF
Sbjct: 265 KFQNKAILLIHFSARYSKQEIIEAIEKLPETLKSRTYALTEGF 307
>gi|224035051|gb|ACN36601.1| unknown [Zea mays]
Length = 221
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 153/220 (69%), Positives = 191/220 (86%)
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MY+A+RGLYNLKPPT+FVPP I++DVE L ++HR +EL ++LVALD+GETYE+RND+
Sbjct: 1 MYIATRGLYNLKPPTVFVPPCIRDDVEDLLQVHRRTSQIELKVELVALDLGETYEIRNDL 60
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V RPF+T+H IPSQGYVIY +R+KLKKQY HLKG QI KLK+SG EITD IL PEVAFTG
Sbjct: 61 VARPFQTYHTIPSQGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEITDTILYPEVAFTG 120
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S+F+L+PRNADALRAK+LITEATFLDD + +EHA++HGH HLSEI+E+ +W RN+ +
Sbjct: 121 DTKSDFILDPRNADALRAKVLITEATFLDDHVDVEHAREHGHMHLSEIMEHFQWFRNETI 180
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
+LTHFS+RY +EDIRQAV +LQ K+++KVV LTEGFKS Y
Sbjct: 181 VLTHFSNRYSLEDIRQAVSRLQPKLNSKVVALTEGFKSDY 220
>gi|168067069|ref|XP_001785449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662955|gb|EDQ49751.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 153/275 (55%), Positives = 214/275 (77%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
++++G +IEGVS+GG ETC++IP LK AFDIGRCP RAI Q+F+FI+H H+DHIGG+ M
Sbjct: 21 ALEVDGLSIEGVSVGGQETCILIPALKLAFDIGRCPERAISQDFLFISHAHMDHIGGVCM 80
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YVA+RGL+ +KPPT+ VP +K VEKLF++HR L EL L+ LD+GE + M ++V
Sbjct: 81 YVATRGLFKMKPPTVIVPKCLKPTVEKLFDVHRELDGSELKHQLIGLDIGEEFNMGKNLV 140
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
V+ FKT+HV+PSQGYV+Y ++ KLK +Y+ L G++I++LK SGV+ITD + PEVAFTGD
Sbjct: 141 VKAFKTYHVVPSQGYVVYSVKNKLKPEYLGLPGQKIKELKMSGVQITDTLRVPEVAFTGD 200
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
TT +F+L+ N DAL+AK+LI E TFLDD ++I+HA+++GHTHLSE+I+ A + NK++L
Sbjct: 201 TTPDFILDDANIDALQAKLLIMETTFLDDAVTIQHAREYGHTHLSEVIKYANRLLNKSIL 260
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY E+I +AV +L + +V LTEGF
Sbjct: 261 FIHFSARYKREEILRAVEELPPPLQGRVAALTEGF 295
>gi|449466917|ref|XP_004151172.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
gi|449515384|ref|XP_004164729.1| PREDICTED: nuclear ribonuclease Z-like [Cucumis sativus]
Length = 352
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 153/252 (60%), Positives = 199/252 (78%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KGI +EGY I+G+SIGGHETC+I P L AFDIGRCP +AI Q+F+FI+HGH+DHIGGLP
Sbjct: 22 KGIQIEGYPIKGLSIGGHETCIIFPTLNLAFDIGRCPQKAISQDFLFISHGHMDHIGGLP 81
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+YVA+RGLY + PPTI VP SIK DVE L E+HR L EL +L+ L+VGE +R D+
Sbjct: 82 LYVATRGLYKMGPPTIIVPKSIKNDVENLLEVHRRLDQSELRCNLIGLEVGEELSLRRDL 141
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+HVI SQGY++Y +++KLKK Y+ L G +I+KL+ SGVEIT I PEVAFTG
Sbjct: 142 KVRVFRTYHVIDSQGYLLYSVKQKLKKDYLGLSGNEIKKLRLSGVEITYTITEPEVAFTG 201
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DTTS+F+++ N D LRAKIL+ E+TFL++ + +EHA+++GHTHL EII +AK +NKA+
Sbjct: 202 DTTSDFIVDENNIDVLRAKILVMESTFLENRVKVEHAREYGHTHLFEIINHAKKFKNKAI 261
Query: 314 LLTHFSSRYHIE 325
LL HFS+RY E
Sbjct: 262 LLIHFSARYTTE 273
>gi|255540937|ref|XP_002511533.1| ribonuclease z, chloroplast, putative [Ricinus communis]
gi|223550648|gb|EEF52135.1| ribonuclease z, chloroplast, putative [Ricinus communis]
Length = 269
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 151/254 (59%), Positives = 199/254 (78%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+E Y IEG+SIGGHETC+I+P L AFDIGRCP RAI Q+F+FI+H H+DHIGGLPMYVA
Sbjct: 3 IEEYPIEGLSIGGHETCIILPSLNLAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVA 62
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+RGLY +KPPTI VP SIKE VE+LFE+HR L ELN L+ LDVGE + +R D+ VR
Sbjct: 63 TRGLYRMKPPTIIVPTSIKETVEQLFEVHRKLDGSELNHKLIGLDVGEEFYVRKDLKVRA 122
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
F+T+H I SQGYV+Y ++ KLK++++ L G +I+ LK SGVEIT+ + +PE+AFTGDT S
Sbjct: 123 FRTYHAIQSQGYVVYSIKHKLKQEFLGLSGNEIKNLKASGVEITNTVTAPEIAFTGDTMS 182
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
+F+++ N DALRA+IL+ E+TF+DD + +EHA+ +GHTHLSEI+ A NKA+LL H
Sbjct: 183 DFIIDETNIDALRARILVMESTFIDDTVKVEHARDYGHTHLSEIVNYADRFENKAILLIH 242
Query: 318 FSSRYHIEDIRQAV 331
FS+RY +E I +
Sbjct: 243 FSARYTVEAIEHII 256
>gi|242060950|ref|XP_002451764.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
gi|241931595|gb|EES04740.1| hypothetical protein SORBIDRAFT_04g007440 [Sorghum bicolor]
Length = 320
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 198/261 (75%), Gaps = 6/261 (2%)
Query: 65 RKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHG 124
R+ RA R +++EGY +EG+SI GHETCV+ P L AFDIGRCP A+ Q+F+F++H
Sbjct: 32 RRPRATQQR--LEIEGYHVEGISIAGHETCVMFPSLNLAFDIGRCPPLAVSQDFLFVSHA 89
Query: 125 HLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184
H+DHIGGLP+YVA+RG ++PPT+FVP + + V +LF++HR++ +L+ LV L+VG
Sbjct: 90 HMDHIGGLPVYVATRGRRRMRPPTVFVPACLADLVRRLFDVHRAMDQSDLDHKLVPLEVG 149
Query: 185 ETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
E Y++ D+ VRPF+T+HV GYVIY +++KLK++Y L GK++ LKKSGVEIT++
Sbjct: 150 EEYQLTKDLSVRPFRTYHV----GYVIYKVKQKLKEEYAGLPGKELSNLKKSGVEITNVE 205
Query: 245 LSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIEN 304
+PE+AF+GDT S+F+L+P NAD L+AKIL+ E+TF+DD SIE A++ GH HLSEI+
Sbjct: 206 STPEIAFSGDTMSDFILDPDNADVLKAKILVVESTFIDDSKSIEDARERGHIHLSEIVSL 265
Query: 305 AKWIRNKAVLLTHFSSRYHIE 325
+ ++NKA+LL HFS RY E
Sbjct: 266 SDKLKNKAILLNHFSLRYTAE 286
>gi|414885984|tpg|DAA61998.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 248
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 130/200 (65%), Positives = 166/200 (83%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQGYVIY +R+KLKKQY HL
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQGYVIYSIRRKLKKQYAHL 228
Query: 226 KGKQIEKLKKSGVEITDIIL 245
KG QI KLK+SG E++ +L
Sbjct: 229 KGSQIMKLKQSGTEVSCEVL 248
>gi|168005121|ref|XP_001755259.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693387|gb|EDQ79739.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 198/293 (67%), Gaps = 19/293 (6%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++ G++IEGVS+GG ETCV++P LK AFD GRCP R I ++VFITH H+DHIGGL MY
Sbjct: 62 LEVGGFSIEGVSVGGQETCVMLPALKVAFDSGRCPGRIIDMDYVFITHAHMDHIGGLTMY 121
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
+ASRGL K PT+ VP IK VEKL + R L L ++L+ +D+GE +++ ++V
Sbjct: 122 IASRGLKKKKVPTVIVPKCIKATVEKLLAVQRELDESPLPVNLIGMDIGEEFDLGKGLIV 181
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+HV+PSQGYVIY +++KLK +++ L GK+I+ L++SGVE+++ + EVAFTGDT
Sbjct: 182 KAFKTYHVVPSQGYVIYTVKQKLKAEHVGLPGKEIKALRESGVEVSETVRISEVAFTGDT 241
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIEN----------- 304
TS F L+ N D L AK+LI E+TFLDD S+E A ++GH HL EI+ +
Sbjct: 242 TSGFFLDEANEDVLHAKLLIMESTFLDDSTSVEDANKYGHMHLFEIVSSTFVIWFSAFIL 301
Query: 305 --------AKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
A +NK +L HFS+RY EDI +A+ + + + +V LTEGF
Sbjct: 302 DCKQVLAHADKFKNKDILFIHFSARYQQEDICKAIENIPAPLQGRVHALTEGF 354
>gi|125581291|gb|EAZ22222.1| hypothetical protein OsJ_05878 [Oryza sativa Japonica Group]
Length = 270
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 137/274 (50%), Positives = 187/274 (68%), Gaps = 32/274 (11%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ +EGY +EG+SIGG ETCVI P L AFDIGRCP RA+ Q F+FI+H HLDHIGGLPMY
Sbjct: 29 LTVEGYPVEGISIGGQETCVIFPTLSAAFDIGRCPQRAVSQEFLFISHAHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY +PPTIF+P +++ VE+LFE+HRS+ EL+ +LV L++G+ +E+R D+ V
Sbjct: 89 VATRGLYRQRPPTIFIPACLRDPVERLFELHRSMDQSELSHNLVPLEIGQEHELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ FKT+H IPSQ IT+ + PE+AFTGDT
Sbjct: 149 KAFKTYHAIPSQ--------------------------------ITNTLTVPEIAFTGDT 176
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
++F+L+P NAD L+AKIL+ E+TF+DD ++IEHA+++GHTHL EI+ + NKA+LL
Sbjct: 177 MADFILDPDNADVLKAKILVVESTFVDDSVTIEHAREYGHTHLFEILNQCDKLENKAILL 236
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
HFS+RY E+I A+ KL ++V L EGF
Sbjct: 237 IHFSARYTAEEIDIAINKLPPSFRSRVHALKEGF 270
>gi|194699558|gb|ACF83863.1| unknown [Zea mays]
gi|414885982|tpg|DAA61996.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 279
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 166/231 (71%), Gaps = 31/231 (13%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
IGR P A+ Q+++FITH HLDHIGGLPMY+A+RGLYNLKPPT+FVPP I++DVE L ++
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHIGGLPMYIATRGLYNLKPPTVFVPPCIRDDVEDLLQV 168
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ------------------ 207
HR +EL ++LVALD+GETYE+RND+V RPF+T+H IPSQ
Sbjct: 169 HRRTSQIELKVELVALDLGETYEIRNDLVARPFQTYHTIPSQVLLLRASRHLFFVICHDL 228
Query: 208 -------------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL 245
GYVIY +R+KLKKQY HLKG QI KLK+SG E++ +L
Sbjct: 229 MPIDIIHPMNGVKGYVIYSIRRKLKKQYAHLKGSQIMKLKQSGTEVSCEVL 279
>gi|145352107|ref|XP_001420399.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580633|gb|ABO98692.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 313
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 181/274 (66%), Gaps = 1/274 (0%)
Query: 77 DLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYV 136
+L GY IEGVS+GG ET V++P L AFD GRCP R + + + ++H H+DH+GG MY+
Sbjct: 39 ELAGYKIEGVSVGGRETSVVLPALGVAFDSGRCPQRCVYADVMCLSHTHMDHVGGCGMYI 98
Query: 137 ASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVR 196
A+RGL +L PPT+ +P + +E E R+L + ELN + +D GE Y M +
Sbjct: 99 ATRGLLSLTPPTVLLPSARREAFGTFIESLRALDDSELNHRAIGIDPGERYAMNKLFEIA 158
Query: 197 PFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT 256
F+T H +PSQGYV+Y ++KLK Y L G +I++L+ G ++TD + PEVAFTGDTT
Sbjct: 159 AFRTRHPVPSQGYVVYGTKQKLKPAYAGLSGPEIKRLRDDGEQVTDKVEVPEVAFTGDTT 218
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+++ +P NADALRAK+LI E TF+DD +S A++ GHTH+ +I+ A +N+A+LL
Sbjct: 219 GDWIDDPANADALRAKLLIMECTFIDDAVSKHDAERFGHTHIDDIVARADKFQNEAILLI 278
Query: 317 HFSSRYHIEDIRQAV-LKLQSKVSAKVVPLTEGF 349
HFS+RY E++R A+ KL + K P+ GF
Sbjct: 279 HFSARYKAEEVRAALKAKLPRALYEKCTPMLVGF 312
>gi|308809015|ref|XP_003081817.1| RNase Z (ISS) [Ostreococcus tauri]
gi|116060284|emb|CAL55620.1| RNase Z (ISS) [Ostreococcus tauri]
Length = 289
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 179/271 (66%), Gaps = 1/271 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY IEG+S+GG +T VI+P L FD GRCP R++ + + ++H H+DHIGG MYVA+R
Sbjct: 18 GYEIEGISVGGQQTSVIVPRLSLCFDSGRCPQRSVYADHMCVSHTHMDHIGGCGMYVATR 77
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
GL L PP I +P + + R+L + EL + + ++ GE + M + PFK
Sbjct: 78 GLLKLSPPKILLPKRRVDAFATFMDAMRALDDSELRHEAIGIEPGERFAMSKLFEIAPFK 137
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PSQGY++Y ++KLK +Y L G I+KL+++GV +TD + PEVAFTGDTT+ +
Sbjct: 138 TTHPVPSQGYIVYGTKQKLKSEYAGLDGGDIKKLRENGVIVTDKVEVPEVAFTGDTTAAW 197
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ +P N DALRAK+LI E TF+DD +S E A+++GHTH+ ++I A N+ +LL HFS
Sbjct: 198 IDDPANVDALRAKLLIMECTFVDDSVSKEDAEEYGHTHIDDLISRADKFENEGILLIHFS 257
Query: 320 SRYHIEDIRQAV-LKLQSKVSAKVVPLTEGF 349
+RY E++R+A+ +L K+ K P+ G+
Sbjct: 258 ARYKAEEVRRALEARLPKKLFDKTTPMLVGY 288
>gi|388493940|gb|AFK35036.1| unknown [Lotus japonicus]
Length = 210
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/183 (67%), Positives = 149/183 (81%), Gaps = 3/183 (1%)
Query: 1 MQLSLPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGPLNALKSAGFLSSISRAIDE 60
MQ+SL S + IFPFH P+ P + H +SL + LNA+K +G+LS+IS+AID
Sbjct: 1 MQISLTNSAFETLKIFPFHQPIFPQKPPNHHQVSLPTQ---LNAVKGSGYLSNISKAIDY 57
Query: 61 EEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVF 120
EE+Y+ A++ V RKG++LEGY+IEG+SIGG ETC+II E KCAFDIGRCPTRAI QNFVF
Sbjct: 58 EEQYKLAKSQVHRKGLNLEGYSIEGLSIGGQETCIIIHEFKCAFDIGRCPTRAIHQNFVF 117
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
ITH HLDHIGGLPMY+ASRGLYNLKP T+FVPP IKEDVEKL +IHR+LG VELN++LVA
Sbjct: 118 ITHAHLDHIGGLPMYIASRGLYNLKPATVFVPPCIKEDVEKLLDIHRTLGQVELNVELVA 177
Query: 181 LDV 183
LDV
Sbjct: 178 LDV 180
>gi|357121275|ref|XP_003562346.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like
[Brachypodium distachyon]
Length = 259
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 115/223 (51%), Positives = 164/223 (73%), Gaps = 5/223 (2%)
Query: 127 DHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGET 186
DH+ YVA+R L+PPTIF+P + E VE+LFE++R++ EL LV L++G+
Sbjct: 42 DHV-----YVAAREFLRLRPPTIFIPACLAEPVERLFEVYRAISRSELKHILVPLELGQE 96
Query: 187 YEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246
YE R D+ VR FKT+HVIPSQGYVIY + +KLK+++I L G +I++LK SGVEIT+ + +
Sbjct: 97 YEFRRDLKVRAFKTYHVIPSQGYVIYTMNQKLKQEFIGLPGTEIKRLKLSGVEITNTVST 156
Query: 247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
PE+AFTGDTTSEF+L+P N+D L AKIL+ E+TFLD+ +S+EHA+++GHTHL E+ ++
Sbjct: 157 PEIAFTGDTTSEFILDPNNSDVLXAKILVVESTFLDNSISVEHAREYGHTHLFEVASQSE 216
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+ NKA++L HFS RY E+I A+ L + ++V L EGF
Sbjct: 217 KLGNKAIVLMHFSPRYTSEEIDAAINTLSPALRSRVYALKEGF 259
>gi|255073987|ref|XP_002500668.1| predicted protein [Micromonas sp. RCC299]
gi|226515931|gb|ACO61926.1| predicted protein [Micromonas sp. RCC299]
Length = 297
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 176/276 (63%), Gaps = 3/276 (1%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L GY IEG+S+GG ETC+I+P+LK AFD GRCP R + + + ++H HLDH+GG Y+A
Sbjct: 22 LAGYKIEGISVGGQETCIILPQLKIAFDSGRCPQRCVYADTLCLSHTHLDHVGGAGHYIA 81
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+R L +L PPT+ +P + E R+L EL V ++ GET+ + VRP
Sbjct: 82 TRSLLSLPPPTVLLPAQRADAFEAYVASLRALDGSELPHVAVPIEPGETHVLSKLHCVRP 141
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
F T H + SQGYV+Y ++KL+++Y L G++I+ L+ +G +TD I PEVAFTGD +
Sbjct: 142 FPTTHPVASQGYVVYGTKRKLREEYAGLSGQEIKALRDAGTVVTDSIEVPEVAFTGDASG 201
Query: 258 EFMLN--PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
E+ + P DALRAK+LI E TF+DD + +E A+++GHTH+ E+ A N+ +LL
Sbjct: 202 EWTRSDHPVARDALRAKLLICECTFVDDAVDVEGAREYGHTHIDELAAAADAFENERILL 261
Query: 316 THFSSRYHIEDIRQAVLK-LQSKVSAKVVPLTEGFK 350
HFS+RY ++ +A+ K L + + + VP+ GF
Sbjct: 262 IHFSARYKAGEVTEAIEKRLPAGLRERCVPMLVGFN 297
>gi|41017597|sp|P60193.1|RNZN_WHEAT RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName:
Full=Zinc phosphodiesterase ELAC; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 176
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 139/169 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGGHETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ ELN LV LD+GE YE+R D+ V
Sbjct: 67 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
R FKT+H IPSQGYVIY +++KLK+ Y+ L G +I++LK SGVEIT+ +
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTV 175
>gi|357494721|ref|XP_003617649.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518984|gb|AET00608.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 412
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 103/167 (61%), Positives = 133/167 (79%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +EG+SIGGHETCVI + AFDIGRCP RA+ +F+ I+H H+DHIGGLP
Sbjct: 18 KGLNIEGYQVEGLSIGGHETCVIFSNFRVAFDIGRCPPRAVSMDFLLISHAHMDHIGGLP 77
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGLY +KPPTI VP S+KEDVEKLFEIHR + EL +L+ LDVGE + +R D+
Sbjct: 78 MYVATRGLYRMKPPTIIVPISVKEDVEKLFEIHRKMDQSELKHNLIGLDVGEEFSLRQDL 137
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
V+ F+T+HVIPSQGY++Y ++ KLK +YI L G +I+KLK SGVE
Sbjct: 138 KVKAFRTYHVIPSQGYILYSVKNKLKPEYIGLSGDEIKKLKFSGVEF 184
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 86/111 (77%)
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
+IT+ + PE+AFTGDT S+F+++ N D LRAK+L+ E+TF+++EM++EHA+ +GHTHL
Sbjct: 302 QITNTLKEPEIAFTGDTMSDFIIDENNTDVLRAKVLVLESTFVNNEMTVEHARDYGHTHL 361
Query: 299 SEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
SEII A ++NKA+LL HFS+RY +E+I+QAV L ++ + LTEGF
Sbjct: 362 SEIISYADKLQNKAILLIHFSARYTVEEIQQAVSALPPPLAGRTFALTEGF 412
>gi|303290104|ref|XP_003064339.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453937|gb|EEH51244.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 179/294 (60%), Gaps = 22/294 (7%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L G+ +EGVS+GG ETCVI+P+LK AFD GRCP RA+ + + ++H H+DH+GG Y+A
Sbjct: 1 LAGFRVEGVSVGGQETCVILPQLKIAFDSGRCPQRAVYADTLCLSHTHMDHVGGAGFYIA 60
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV---ELNLDLVALDVGETYEMRNDIV 194
SR L +L PP++ +P + RSL + EL LV + GET+ + V
Sbjct: 61 SRALVSLPPPSVLIPAEARSRAAAFDAFIRSLRELDASELPHHLVPISPGETHVVSKLHV 120
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
VRPF+T H + SQGYV+Y ++KLK ++ G QI+ L+ +G ++TD I PEVAFTGD
Sbjct: 121 VRPFQTIHPVASQGYVVYGTKEKLKAEHAGKTGAQIKALRDAGAKVTDTIEVPEVAFTGD 180
Query: 255 TTSEFM----------------LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
T++E++ ++ DALRAK+LI E TF+DD +S E A+ GHTH+
Sbjct: 181 TSAEWIRRATATATEGGEGEGDVDVVARDALRAKLLICECTFVDDAVSPEGARDFGHTHI 240
Query: 299 SEIIENAK--WIRNKAVLLTHFSSRYHIEDIRQAVL-KLQSKVSAKVVPLTEGF 349
E+ A+ +N+AVLL HFS+RY +I A+ K + + +V PL GF
Sbjct: 241 DELAAAARDGKFQNEAVLLIHFSARYRGREIEDAIAEKFPEEFAKRVTPLLVGF 294
>gi|413925891|gb|AFW65823.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
gi|413925892|gb|AFW65824.1| hypothetical protein ZEAMMB73_730401 [Zea mays]
Length = 197
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 133/161 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK S
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|224034447|gb|ACN36299.1| unknown [Zea mays]
Length = 197
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 132/161 (81%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG ETCVI P L AFDIGRCP RA+ Q F+F++HGHLDHIGGLPMY
Sbjct: 29 IEIEGYPVDGVSIGGQETCVIFPTLSLAFDIGRCPQRAVSQEFLFVSHGHLDHIGGLPMY 88
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGL+ L+PPTI VP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+ V
Sbjct: 89 VATRGLFRLRPPTICVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDLKV 148
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
R F+T+H IPSQGYVIY +++KLK+++I L G +I++LK S
Sbjct: 149 RAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLS 189
>gi|412990070|emb|CCO20712.1| predicted protein [Bathycoccus prasinos]
Length = 300
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 178/283 (62%), Gaps = 11/283 (3%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L G+ IEG+SIGG ET +I P+LK FD GRC R + + + +TH H+DHIGGL MY+A
Sbjct: 17 LSGFNIEGLSIGGQETSIIFPQLKLCFDSGRCYQRCVYADTMCLTHTHMDHIGGLGMYIA 76
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV--ALDVGETYEMRN-DIV 194
SR L +L PPTI VP S E + + R L + +L +++ A Y M+N +
Sbjct: 77 SRNLLSLPPPTILVPESKIEAISNFIDALRVLDDSDLPHEMIPFAPSAETCYSMKNKNYK 136
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
++ F+T H I SQGYVI ++KLK +Y+ LKG +I+ LK GVEITD + PE+ FTGD
Sbjct: 137 IKAFETVHPIASQGYVILSTKQKLKDEYLSLKGSEIKALKDDGVEITDTVDVPEIMFTGD 196
Query: 255 TTSEFM-LNPRNA--DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN- 310
TT +F+ +P+ + L+++++ E TF +D++S A++ GHTH+ +I ENA R
Sbjct: 197 TTMDFLHSSPQEVIQEGLKSRLVCLECTFFNDDVSPADAKRFGHTHVRDIAENADRFREC 256
Query: 311 KAVLLTHFSSRYHIEDIRQA----VLKLQSKVSAKVVPLTEGF 349
+ +LL HFS+RY E+IR+ + + + + AK+ P+ G+
Sbjct: 257 ENILLIHFSARYTREEIREGLRNQLAESHAWLYAKITPMLAGY 299
>gi|159489028|ref|XP_001702499.1| nuclear RNase Z [Chlamydomonas reinhardtii]
gi|158280521|gb|EDP06278.1| nuclear RNase Z [Chlamydomonas reinhardtii]
Length = 335
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 171/280 (61%), Gaps = 5/280 (1%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+ + G+ +EG+SI G ET +I+P K FDIGRCP RA Q V ++H HLDH+GGLP +
Sbjct: 56 LAVSGWELEGISISGQETSIIVPRAKVTFDIGRCPQRACFQQTVLLSHTHLDHVGGLPFH 115
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRNDIV 194
V +R + L P + VP V KL + L + ++ +++ L+ G+ +E+ + +
Sbjct: 116 VCTRNMLQLPPSKVVVPQGFSAGVRKLMDAVLELQSSPPIDYEVLELEAGQDFELPSGFL 175
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
R F T H IPSQGYV+Y RKKLK + +I++L+ SGV++++ PE+AFTGD
Sbjct: 176 CRTFPTTHAIPSQGYVLYSQRKKLKAELQGKSQAEIKELRFSGVDVSETHQVPEIAFTGD 235
Query: 255 TTSEFMLNPRNA---DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
TTS F+ NA DAL+AK+L E TF+ +++++E A+ GH H+++ + +A +N+
Sbjct: 236 TTSAFLDAETNATLEDALKAKVLCIEMTFISEDVTVEEARGKGHMHITDFVAHAHRFQNE 295
Query: 312 AVLLTHFSSRYHIEDI-RQAVLKLQSKVSAKVVPLTEGFK 350
++L HFS RY +I Q + L + AK VPL G +
Sbjct: 296 TIVLIHFSPRYKRSEILHQLDIMLPPALRAKCVPLLNGIE 335
>gi|302836959|ref|XP_002950039.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
gi|300264512|gb|EFJ48707.1| hypothetical protein VOLCADRAFT_80918 [Volvox carteri f.
nagariensis]
Length = 268
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 159/265 (60%), Gaps = 5/265 (1%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIF 150
ET +I P K FDIGRCP RA Q V ++H HLDH+GGLP +V +R + +L +
Sbjct: 4 QETSIIFPRGKVTFDIGRCPQRACFQQTVLLSHAHLDHVGGLPFHVCTREMLSLPASRVV 63
Query: 151 VPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
VP V KL + R L G+ L+ ++ L +GE + + + + R F T H I SQGY
Sbjct: 64 VPQGFAAGVRKLVDAARELQGSPPLDYQVLELQLGEDHVLPSGYLCRCFPTTHTITSQGY 123
Query: 210 VIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA--- 266
V+Y R+KLK + ++I +L+ +G ++TD + PE+AFTGDTT+ F+ P A
Sbjct: 124 VLYSQRRKLKAELQGKSQEEIRQLRLAGQDVTDTVAVPEIAFTGDTTAGFLDGPGCATLE 183
Query: 267 DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
DAL+A++LI E TFL D+++++ A+ GH H+++ + NA +N+A++L HFS RY D
Sbjct: 184 DALKARVLIMEMTFLCDDVTVDEARDKGHMHIADFVANAHRFQNEAIVLIHFSPRYKRTD 243
Query: 327 IRQAV-LKLQSKVSAKVVPLTEGFK 350
I + L + AK VPL G +
Sbjct: 244 IITTLNTMLPPSLMAKCVPLLNGIE 268
>gi|406830995|ref|ZP_11090589.1| hypothetical protein SpalD1_05142 [Schlesneria paludicola DSM
18645]
Length = 279
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 4/256 (1%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S ++ IPELK FD+G P + +FITH HLDH+ LP+YVA
Sbjct: 13 DGLTIEGYSRAAVQSYWRIPELKLGFDLGGSPWDFMNVPTIFITHAHLDHMAALPVYVAR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + ++PPTI++P E ++L ++ + L + LV + G+ E+ D VV F
Sbjct: 73 RRMMKMEPPTIYLPEENVEWADRLLKVWQRLDRGRMVCQLVGVKPGQEIELSRDHVVTTF 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+T H +PS GY+++ RKKLK QY + G +I L+KSGV++T + +P V +TGDT
Sbjct: 133 ETRHTVPSVGYLVWQRRKKLKLQYQSMSGNEIRDLRKSGVDVTHEVRTPLVCYTGDTAPP 192
Query: 259 FMLNPRNADAL-RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
+ N AL AKILITE TF + E + GHTHL +IIE A +N+ +++ H
Sbjct: 193 GL---DNYPALYEAKILITEMTFFRPDHRKEKIYKFGHTHLDDIIERADRFKNELIIIMH 249
Query: 318 FSSRYHIEDIRQAVLK 333
FS+RY I +AV+K
Sbjct: 250 FSTRYATNQIERAVMK 265
>gi|413933024|gb|AFW67575.1| hypothetical protein ZEAMMB73_773613 [Zea mays]
Length = 375
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 142/203 (69%), Gaps = 5/203 (2%)
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
MYVA+RGL+ L PPTIFVP +++ VE+LFE+HR++ ELN +LV L+VGE YE+R D+
Sbjct: 1 MYVATRGLFRLCPPTIFVPACLRDFVERLFEVHRAMDQSELNHNLVPLEVGEEYELRRDL 60
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
VR F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVEIT+ + +PE+AF G
Sbjct: 61 KVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVEITNTVSTPEIAFIG 120
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DTT++F+L+P NAD L+AKIL+ E + S H+ H E+ +N N+
Sbjct: 121 DTTADFILDPDNADVLQAKILVVEEQRGGNAASQSHSISF-HRPKKEVSDNNCVYPNEV- 178
Query: 314 LLTHFSSRYHIEDIRQAVLKLQS 336
H ++R + + + VLK++S
Sbjct: 179 ---HHTARERTQCLDEKVLKVES 198
>gi|418697308|ref|ZP_13258301.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|421109211|ref|ZP_15569735.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
gi|409954810|gb|EKO13758.1| beta-lactamase family protein [Leptospira kirschneri str. H1]
gi|410005731|gb|EKO59518.1| beta-lactamase family protein [Leptospira kirschneri str. H2]
Length = 275
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 151/253 (59%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSSGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++ + K+ +++ + N + +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYSYELSAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++DDE ++ A++ GHTHL EI++N +N+ ++L HFS
Sbjct: 190 L--EHEDVANSSILFIECTYIDDERNVAQAREWGHTHLDEILDNLSSFKNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY + IR+ + K
Sbjct: 248 RYSVSYIREVLDK 260
>gi|325107950|ref|YP_004269018.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
gi|324968218|gb|ADY58996.1| hypothetical protein Plabr_1384 [Planctomyces brasiliensis DSM
5305]
Length = 294
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 148/254 (58%), Gaps = 2/254 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S +T IPELK FD+G P + F++H HLDH+ LP +VA R
Sbjct: 29 GLTIEGYSRAAVQTYWRIPELKLGFDLGGSPWSFMGTPRFFLSHAHLDHMAALPAFVARR 88
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
+ ++PP+I+VP +K DVE+L + L + DL ++ G+ E+ + + +
Sbjct: 89 RMMKMEPPSIWVPAQVKSDVERLLRAWQKLDRGRMVCDLQGVEPGDEIELSREHIALVTE 148
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PS GY+IY R+KLK ++ L G++I L+ +G ++T + P VA+ GDT+
Sbjct: 149 TKHTVPSVGYIIYDRRRKLKAEFQGLPGEKIRDLRLAGEDVTHEVRVPIVAYLGDTSPPG 208
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ + D RAKILITE TF E + + GHTHL +I+E A N+ +LL HFS
Sbjct: 209 L--DAHPDVYRAKILITEMTFFRPEHRKQKIHKFGHTHLDDILERADRFENELILLAHFS 266
Query: 320 SRYHIEDIRQAVLK 333
+RYHI +++AV K
Sbjct: 267 TRYHIAHLKRAVKK 280
>gi|398339983|ref|ZP_10524686.1| metallo-beta-lactamase [Leptospira kirschneri serovar Bim str.
1051]
gi|418677210|ref|ZP_13238486.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418686998|ref|ZP_13248161.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|421130521|ref|ZP_15590715.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|400322158|gb|EJO70016.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410358220|gb|EKP05401.1| beta-lactamase family protein [Leptospira kirschneri str.
2008720114]
gi|410738394|gb|EKQ83129.1| beta-lactamase family protein [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
Length = 275
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 150/253 (59%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSSGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++ + K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++DDE ++ A++ GHTHL EI++N +N+ ++L HFS
Sbjct: 190 L--EHEDVANSSILFIECTYIDDERNVAQAREWGHTHLDEILDNLSSFKNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY + IR+ + K
Sbjct: 248 RYSVSYIREVLDK 260
>gi|410942651|ref|ZP_11374426.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
gi|410782289|gb|EKR71305.1| beta-lactamase family protein [Leptospira noguchii str. 2006001870]
Length = 275
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 149/253 (58%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKPPKIFVPAPLKEPMQKILDLYSEIENFTYAYELYAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L ++ + K E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSLSQDELNQALKEKREVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D+E ++ A++ GHTHL EI+ N +N+ ++L HFS
Sbjct: 190 LE--HEDVANSSILFIECTYIDEERNVAQAREWGHTHLDEILGNLSAFKNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|392403499|ref|YP_006440111.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
gi|390611453|gb|AFM12605.1| metallo-beta-lactamase [Turneriella parva DSM 21527]
Length = 277
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
+ + GG ETC I+P + AFD GRCP I VF+THGHLDH GLP Y++ R L
Sbjct: 10 AVNAIGRGGIETCYILPAFQLAFDTGRCPDGLIDMPRVFLTHGHLDHSAGLPYYISQRSL 69
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
+L PP I+ P I + ++ + + + E + L L G+ +R D+ VR +
Sbjct: 70 RHLPPPEIYCPAEIVAPLREILHLWQKIEGFEYPVALKGLSPGDEIPVRKDLYVRALASS 129
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +P +GY + +KLK +Y+ + G++I+++K G I + P AF+GDTT EF+
Sbjct: 130 HRVPCRGYALVRKTRKLKDEYLTVNGREIKRMKDRGEAIFEDRDIPIFAFSGDTTIEFLQ 189
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
+ N A A +L E T++DD+ + A++ GH HL EII +A +N+ ++LTHFS R
Sbjct: 190 D--NQAAREATVLFIECTYIDDKRPVARAREWGHIHLDEIIAHAHLFKNEKIVLTHFSKR 247
Query: 322 YHIEDIRQAVLKLQSK 337
Y+ R+ +L++ +K
Sbjct: 248 YN----RRFILQVLNK 259
>gi|359684873|ref|ZP_09254874.1| metallo-beta-lactamase [Leptospira santarosai str. 2000030832]
gi|410451159|ref|ZP_11305177.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|418745247|ref|ZP_13301587.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|418753711|ref|ZP_13309953.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|421111542|ref|ZP_15572018.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|422002686|ref|ZP_16349922.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409965982|gb|EKO33837.1| beta-lactamase family protein [Leptospira santarosai str. MOR084]
gi|410014936|gb|EKO77050.1| beta-lactamase family protein [Leptospira sp. Fiocruz LV3954]
gi|410793709|gb|EKR91624.1| beta-lactamase family protein [Leptospira santarosai str. CBC379]
gi|410803152|gb|EKS09294.1| beta-lactamase family protein [Leptospira santarosai str. JET]
gi|417258777|gb|EKT88163.1| metallo-beta-lactamase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873492|gb|EMF88867.1| beta-lactamase family protein [Leptospira santarosai str. ST188]
Length = 275
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 147/253 (58%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG + + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRVHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPVALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K G E++++ P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLALKQGKEVSELSEIPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EI+EN RN+ ++L HFS
Sbjct: 190 LE--HEDVANSSILFIECTYIDQERNVAQAREWGHIHLDEILENLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY + IR+ + K
Sbjct: 248 RYSVSYIREVLDK 260
>gi|24216098|ref|NP_713579.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45656664|ref|YP_000750.1| hypothetical protein LIC10770 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386075158|ref|YP_005989478.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|417758987|ref|ZP_12407026.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|417767389|ref|ZP_12415330.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417769184|ref|ZP_12417103.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417775147|ref|ZP_12423006.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|417786493|ref|ZP_12434183.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|418666847|ref|ZP_13228266.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418674574|ref|ZP_13235874.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|418681574|ref|ZP_13242800.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418693070|ref|ZP_13254135.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|418699160|ref|ZP_13260126.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418707060|ref|ZP_13267896.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418711705|ref|ZP_13272460.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418714788|ref|ZP_13275280.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|418723543|ref|ZP_13282382.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|418730253|ref|ZP_13288754.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|421084350|ref|ZP_15545211.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|421101177|ref|ZP_15561791.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421117220|ref|ZP_15577588.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421122253|ref|ZP_15582537.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|421127386|ref|ZP_15587610.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136526|ref|ZP_15596631.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|24197338|gb|AAN50597.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
56601]
gi|45599900|gb|AAS69387.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458950|gb|AER03495.1| metallo-beta-lactamase [Leptospira interrogans serovar Lai str.
IPAV]
gi|400326724|gb|EJO78987.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400350127|gb|EJP02405.1| beta-lactamase family protein [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400357026|gb|EJP13180.1| beta-lactamase family protein [Leptospira interrogans str. FPW2026]
gi|409945087|gb|EKN90665.1| beta-lactamase family protein [Leptospira interrogans str.
2002000624]
gi|409948927|gb|EKN98912.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409950115|gb|EKO04644.1| beta-lactamase family protein [Leptospira interrogans str. C10069]
gi|409963243|gb|EKO26972.1| beta-lactamase family protein [Leptospira interrogans str. UI
12621]
gi|410011244|gb|EKO69367.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410019414|gb|EKO86234.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410344805|gb|EKO95962.1| beta-lactamase family protein [Leptospira interrogans str. Brem
329]
gi|410368973|gb|EKP24347.1| beta-lactamase family protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433098|gb|EKP77448.1| beta-lactamase family protein [Leptospira santarosai str. HAI1594]
gi|410435476|gb|EKP84608.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575068|gb|EKQ38091.1| beta-lactamase family protein [Leptospira interrogans str.
2002000621]
gi|410578357|gb|EKQ46218.1| beta-lactamase family protein [Leptospira interrogans str.
2002000623]
gi|410757628|gb|EKR19239.1| beta-lactamase family protein [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410761742|gb|EKR27914.1| beta-lactamase family protein [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410763266|gb|EKR33997.1| beta-lactamase family protein [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410767948|gb|EKR43206.1| beta-lactamase family protein [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774930|gb|EKR54933.1| beta-lactamase family protein [Leptospira interrogans str. UI
12758]
gi|410788962|gb|EKR82667.1| beta-lactamase family protein [Leptospira interrogans str. UI
08452]
gi|455669334|gb|EMF34465.1| beta-lactamase family protein [Leptospira interrogans serovar
Pomona str. Fox 32256]
gi|456822819|gb|EMF71289.1| beta-lactamase family protein [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 275
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 149/253 (58%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D+E ++ A++ GHTHL EI+ N +N+ ++L HFS
Sbjct: 190 L--EHEDVANSSILFIECTYIDNERNVAQAREWGHTHLDEILNNLSSFKNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY + IR+ + K
Sbjct: 248 RYSVSYIREVLDK 260
>gi|296123238|ref|YP_003631016.1| hypothetical protein Plim_2995 [Planctomyces limnophilus DSM 3776]
gi|296015578|gb|ADG68817.1| Nuz [Planctomyces limnophilus DSM 3776]
Length = 279
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 150/266 (56%), Gaps = 11/266 (4%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
TIEG S ++ IPELK FD+G P I FITH HLDH+ LP YVA R +
Sbjct: 16 TIEGWSRAAVQSYWRIPELKIGFDLGGSPWDFIGIPTFFITHAHLDHMAALPAYVARRRM 75
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
L+PPT++VP ++ EDVE++ + L + ++L+ + +E+ + VV F T
Sbjct: 76 MKLEPPTVYVPEAVVEDVERMLRAWQKLDRGRMLVNLIGVGENSEFELGREWVVTSFPTK 135
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +PS GYV++ R KLK +Y L G +I L+ +G E+T + +P +A+TGDT
Sbjct: 136 HTVPSVGYVVWNRRMKLKPEYHGLSGDEIRDLRLAGNEVTAEVRTPWIAYTGDTA----- 190
Query: 262 NPRNADAL----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
P DA +AK+LITE TF E E + GH HL + +E +N+ ++ H
Sbjct: 191 -PAGLDACEAIYQAKVLITEMTFFRPEHRREKVHKFGHLHLDDFVERKDRFQNEVIIAMH 249
Query: 318 FSSRYHIEDIRQAVLK-LQSKVSAKV 342
FS+RY I +AV+K L +++ +K+
Sbjct: 250 FSTRYPTPTIEKAVMKRLPAELKSKI 275
>gi|456864030|gb|EMF82459.1| beta-lactamase family protein [Leptospira weilii serovar Topaz str.
LT2116]
Length = 275
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 146/253 (57%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EII N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|398331089|ref|ZP_10515794.1| metallo-beta-lactamase [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 275
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 146/253 (57%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IF+P +++E + ++ +++ + + D+ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFLPATLEEPMRRILDLYSEIEDFSYLYDMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E++++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNLVLKQKKEVSELSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EII N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY + IR+ + K
Sbjct: 248 RYSVSYIREVLDK 260
>gi|359728213|ref|ZP_09266909.1| metallo-beta-lactamase [Leptospira weilii str. 2006001855]
Length = 275
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 146/253 (57%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + ++ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EII N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVAQAREWGHIHLDEIIGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|417779881|ref|ZP_12427658.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
gi|410780183|gb|EKR64785.1| beta-lactamase family protein [Leptospira weilii str. 2006001853]
Length = 275
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 146/253 (57%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + + ++ A+ G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYSYNMKAVSPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ + K E+++ +P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLVLKQNKEVSEPSETPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EI+ N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVAQAREWGHIHLDEILGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|183220740|ref|YP_001838736.1| putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910841|ref|YP_001962396.1| metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775517|gb|ABZ93818.1| Metallo-beta-lactamase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779162|gb|ABZ97460.1| Putative metallo-hydrolase/oxidoreductase [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 279
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 157/277 (56%), Gaps = 7/277 (2%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
+ +G EG+S GG T +I P L FD G I + ++H HLDH G+P
Sbjct: 5 SFEYKGTKFEGISEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YV+ R L L P I+VP +++ + ++ +++ + + + + DL+ L+ GE E++
Sbjct: 65 YVSQRSLRKLPKPKIYVPKALEPKLSQILKLYSEIEDFDYDCDLIGLEYGERVELKPGYF 124
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
+P + H +PSQGY +Y ++KLKK++ + +I K K++G++ T+ + +P V+F+GD
Sbjct: 125 FKPLPSFHRVPSQGYTVYETKRKLKKEFSSMSSDEIRKSKENGLDPTEEVAAPFVSFSGD 184
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+ E++L N D ++KIL E T+ ++ + A++ GHTH EIIE+A N+A++
Sbjct: 185 SKIEYILE--NEDVRKSKILFMECTYYCEKRDVSRAREWGHTHFDEIIEHASSFENEAIV 242
Query: 315 LTHFSSRYHIEDIRQAVLK-----LQSKVSAKVVPLT 346
L H S RY ++ + K L+ ++S + P T
Sbjct: 243 LIHPSKRYSYRELNDLLRKKVPSVLKDRISLFLPPKT 279
>gi|116327500|ref|YP_797220.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331886|ref|YP_801604.1| metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418721682|ref|ZP_13280857.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|418735728|ref|ZP_13292135.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421092503|ref|ZP_15553243.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|116120244|gb|ABJ78287.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125575|gb|ABJ76846.1| Metallo-beta-lactamase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410364730|gb|EKP15743.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200801926]
gi|410741843|gb|EKQ90595.1| beta-lactamase family protein [Leptospira borgpetersenii str. UI
09149]
gi|410748585|gb|EKR01482.1| beta-lactamase family protein [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887690|gb|EMF98717.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200701203]
Length = 275
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 144/253 (56%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IF+P +++E + ++ +++ + + + D+ A+ G+ ++ P +T
Sbjct: 70 LRKLKPPKIFLPAALEEPMRRILDLYSEIEDFSYSYDMKAVSPGDKVDLDQQYFFSPHRT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K E+++ P V+F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLSQEELNFALKQKKEVSEPSEIPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EII N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSNILFIECTYIDKERNVTQAREWGHIHLDEIIGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|421097854|ref|ZP_15558533.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
gi|410799137|gb|EKS01218.1| beta-lactamase family protein [Leptospira borgpetersenii str.
200901122]
Length = 275
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 143/253 (56%), Gaps = 2/253 (0%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH LP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDTLLLTHSHLDHSCALPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LKPP IFVP +++E + ++ +++ + + D+ A + G+ ++ P KT
Sbjct: 70 LRKLKPPKIFVPAALEEPMRRILDLYSEIEDFSYLYDMKAANPGDKIDLDQQHFFSPHKT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H +PSQGY +Y RKKLKK++ L +++ K E+++ P ++F+GDT E++
Sbjct: 130 FHRVPSQGYTLYQRRKKLKKEFQSLPQEELNLALKQKKEVSEPSEFPVISFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D + IL E T++D E ++ A++ GH HL EII N RN+ ++L HFS
Sbjct: 190 LE--HEDVASSSILFIECTYIDKERNVTQAREWGHIHLDEIIGNLSSFRNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLK 333
RY I IR+ + K
Sbjct: 248 RYSISYIREVLDK 260
>gi|291237107|ref|XP_002738480.1| PREDICTED: TRZ1 (TRNASE Z 1); 3-tRNA processing
endoribonuclease-like [Saccoglossus kowalevskii]
Length = 289
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 154/264 (58%), Gaps = 8/264 (3%)
Query: 76 IDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+D+ + I SI G ETC+++ +K AFDIG +++ + VFI+HGH+DH+ GL
Sbjct: 1 MDVGNFKIYDWSIAGTETCMVVVTDGMKIAFDIGYSTCQSVGCDHVFISHGHMDHVAGLI 60
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDV----EKLFEIH-RSLGNVELNLDLVALDVGETYE 188
+ + R +KP T +VP +K+ + E+L +H + + + + G+ +
Sbjct: 61 HHASKRSNMRMKPATYYVPCILKQSLLVVAEQLSIMHGKEIDYYKHKAPIEDFKSGQQIK 120
Query: 189 MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE 248
+ F T H IPSQGY+++ +R KLK +Y L +I +KKSG+E+T+ PE
Sbjct: 121 LPKSYFATLFPTVHTIPSQGYILWKVRSKLKGEYQGLPSNEIASIKKSGIEVTEQQEYPE 180
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
+AFTGDTT E N L+ K+LI E T+LDDE SI A++ GH HL+E++E+A+
Sbjct: 181 IAFTGDTTFECFQLEGNESVLKVKLLIMECTYLDDETSISEAREKGHLHLNELVEHAELF 240
Query: 309 RN-KAVLLTHFSSRYHIEDIRQAV 331
N +++LL HFS +Y + I + V
Sbjct: 241 ENVESILLMHFSLKYSTQQIEELV 264
>gi|149177337|ref|ZP_01855942.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
gi|148843862|gb|EDL58220.1| hypothetical protein PM8797T_23991 [Planctomyces maris DSM 8797]
Length = 279
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 149/274 (54%), Gaps = 15/274 (5%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+ + +G+TIEG S ++ IPELK FD+G P + FITH HLDH+ LP
Sbjct: 8 QSVKYKGFTIEGYSRAAVQSYWRIPELKLGFDLGGSPWSFMGTAVFFITHAHLDHMAALP 67
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+VA R + + PPTI++P + + V K+ + + L + +L+ L GE ++ +
Sbjct: 68 AFVARRRMMKMSPPTIYLPEEVVDPVWKMLKSWQKLDRGRMECELIGLKDGEEIQLSREH 127
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
V F+T H +PS G+ ++ RKKLK ++ I + SG+E+++ I P V +TG
Sbjct: 128 AVTAFQTKHTVPSLGFQVWDCRKKLKPEFQGKPETDIRDARISGIEVSEEIRVPLVCYTG 187
Query: 254 DTTSEFMLNPRNAD----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
DT P D A +K+LITE TF E E + GH HL +I+E A+ +
Sbjct: 188 DTA------PAGLDHFETAYESKVLITEMTFYRPEHRREKIHKFGHMHLDDIVERAERFQ 241
Query: 310 NKAVLLTHFSSRYHIEDIRQAVLK-----LQSKV 338
N+ ++L HFS+RYH ++ AV K LQS++
Sbjct: 242 NELIILAHFSTRYHDNQVQNAVKKRLSEDLQSRI 275
>gi|430743488|ref|YP_007202617.1| beta-lactamase superfamily metal-dependent hydrolase
[Singulisphaera acidiphila DSM 18658]
gi|430015208|gb|AGA26922.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Singulisphaera acidiphila DSM 18658]
Length = 293
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 14/261 (5%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G T+EG S +T IPELK FD+G P + F++H HLDHI LP+YVA
Sbjct: 27 KGLTVEGYSRAAVQTYWRIPELKLGFDLGAQPWSFMSTPTWFLSHTHLDHIAALPVYVAR 86
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + ++PPTI++P E VE L + L L LV + G+ E+ ++VV+ F
Sbjct: 87 RRMMKMEPPTIYLPAEAIEAVEMLLRAFQKLDRGRLPAKLVGVVPGQEIELSRELVVKTF 146
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
T H IP+ GY++Y R+KLK +Y L G++I ++ SGVE++ I P+VA+ GDT
Sbjct: 147 ATKHTIPAIGYLVYERRRKLKPEYHDLSGEEIRDIRLSGVEVSTEIRMPKVAYLGDTA-- 204
Query: 259 FMLNPRNADAL----RAKILITEATFL--DDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
P D L A+I+I E TF+ D S+ H ++GHTHL +II A N+
Sbjct: 205 ----PAGLDGLPDLYHAEIIILEMTFVAPGDRPSLIH--KYGHTHLDDIIARADRFENEV 258
Query: 313 VLLTHFSSRYHIEDIRQAVLK 333
++ +HFS+R H + I++ V K
Sbjct: 259 IIASHFSTRLHPDQIQRIVDK 279
>gi|408794095|ref|ZP_11205700.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408461330|gb|EKJ85060.1| beta-lactamase family protein [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 279
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 153/275 (55%), Gaps = 7/275 (2%)
Query: 75 GIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPM 134
+ +G EG+S GG T +I P L FD G I + ++H HLDH G+P
Sbjct: 5 SFEYKGIKFEGLSEGGIRTSIICPSLDFMFDFGFINPDKIHIGKILLSHAHLDHSCGIPY 64
Query: 135 YVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194
YV+ R L L P I++P S++ + ++ +++ + + + +L+ LD G+ E++
Sbjct: 65 YVSQRSLRKLPIPKIYLPKSLEPKMSQILKLYSEIEDFDYECELIGLDFGDRVELKPGYF 124
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGD 254
+P+++ H +PSQGY +Y ++KLKK++ L ++I K G + T+ I P V+F+GD
Sbjct: 125 FKPWQSFHRVPSQGYTVYETKRKLKKEWTSLSSEEIRNKKDLGEDPTEEISIPLVSFSGD 184
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T E++L N D ++KIL E T+ ++ + A++ GHTH EI+ NA N+A++
Sbjct: 185 TKIEYVLE--NEDVRKSKILFMECTYYCEKRDVNRAREWGHTHFDEIVANASSFENEAIV 242
Query: 315 LTHFSSRYHIEDIRQAVLK-----LQSKVSAKVVP 344
L H S RY ++ + V K L+ +VS + P
Sbjct: 243 LIHPSKRYSYRELNELVRKKIPPILKDRVSLFLPP 277
>gi|168701937|ref|ZP_02734214.1| hypothetical protein GobsU_20593 [Gemmata obscuriglobus UQM 2246]
Length = 284
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 11/268 (4%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S ++ IPELK FD+G P + F++H HLDH+ LP+YVA R
Sbjct: 19 GLTIEGWSRAAVQSYWRIPELKIGFDLGAQPWDFMGTPNWFVSHTHLDHVAALPVYVARR 78
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
+ + PPT++VP EDV+KL + L L L G+ E+ + VV F
Sbjct: 79 RMMKMDPPTVYVPAEGLEDVKKLMAVMHRLDRGRQLAHLKGLTAGDEIELTREHVVTVFN 138
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H IPS+G+V++ R KLK +YI L G +I++LK +G IT + P VA+TGDT
Sbjct: 139 TVHTIPSRGFVVWERRNKLKDEYIGLPGDKIKELKLAGTAITREVRIPIVAYTGDTA--- 195
Query: 260 MLNPRNADA----LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
P DA AKILITE +F+ + + GH HL + +E A+ +N+ ++
Sbjct: 196 ---PAGLDACPACFDAKILITEMSFVRAAHRRDKIHKFGHMHLDDFVERAQRFKNELIIA 252
Query: 316 THFSSRYHIEDIRQAV-LKLQSKVSAKV 342
HFS+RYH ++R+ + KL + + A++
Sbjct: 253 GHFSTRYHPNEVRKLLDNKLPADLKARM 280
>gi|320102325|ref|YP_004177916.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
gi|319749607|gb|ADV61367.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Isosphaera pallida ATCC 43644]
Length = 293
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/252 (38%), Positives = 142/252 (56%), Gaps = 2/252 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G TIEG S +T +PELK FD+G P + F++H HLDHI LP+YV+ R
Sbjct: 28 GLTIEGYSRAAVQTYWRVPELKVGFDLGVQPWSFMTTPTYFVSHTHLDHIAALPVYVSRR 87
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L ++PPTI++P E V+ L R L L ++ ++ + E+ ++VVR
Sbjct: 88 RLMKMEPPTIYLPSEGVEPVQALLRAMRRLDRGALPAAIIGVEPHQDIELSRELVVRTLP 147
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H IPS G+++Y RKKLK +Y L G QI L+ SGVE++ I P+V + GDTT E
Sbjct: 148 TQHTIPSLGFLVYERRKKLKPEYHDLTGDQIRDLRLSGVEVSAEIRIPKVCYLGDTTPEG 207
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ + D L+A+ILI E TF+ + + GHTHL +I+ A N+ ++ +HFS
Sbjct: 208 IDC--HPDILKAEILILEMTFVTAQERPALIHKFGHTHLDDILARADAFENQIIIASHFS 265
Query: 320 SRYHIEDIRQAV 331
+R I +AV
Sbjct: 266 TRQPANQIHRAV 277
>gi|348676071|gb|EGZ15889.1| hypothetical protein PHYSODRAFT_316061 [Phytophthora sojae]
Length = 283
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 145/264 (54%), Gaps = 6/264 (2%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K ++ GY + + G E+C + + AFD+G R + ++ VFITHGH+DHIG L
Sbjct: 4 KVVEAGGYRLHLRCVAGIESCCYVDAVDVAFDLGYLVDRVVSKSHVFITHGHVDHIGALV 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRND 192
+ A R L KP FVP + +E + + ++ G+ LV L + +
Sbjct: 64 AHAARRALQKQKPAQYFVPAHLVPHLESILQSTAAMQGDEPFPAQLVPLQAYDEVHVSPK 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+VR T H +PS GY+++ R +LK +Y L G +I LK+SG IT L+PE+A+T
Sbjct: 124 YMVRAVPTTHRVPSLGYILFEKRNRLKSEYRELPGPEIAALKRSGQTITSAELTPEIAYT 183
Query: 253 GDTTSEFML----NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
GDTT E + R D LR K+LITEAT+ D +M+++ A GH HL ++ E+
Sbjct: 184 GDTTIEAFTAASDDERMRDLLRVKVLITEATYADGKMTVQDAVARGHMHLDQLAEHEHLF 243
Query: 309 -RNKAVLLTHFSSRYHIEDIRQAV 331
R ++L HFS+RY +D+ + V
Sbjct: 244 QRVGTLVLVHFSARYSADDLAECV 267
>gi|359686865|ref|ZP_09256866.1| hypothetical protein LlicsVM_00735 [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418750724|ref|ZP_13307010.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
gi|418757046|ref|ZP_13313234.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384116717|gb|EIE02974.1| beta-lactamase family protein [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404273327|gb|EJZ40647.1| beta-lactamase family protein [Leptospira licerasiae str. MMD4847]
Length = 276
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 145/254 (57%), Gaps = 2/254 (0%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY EG+S GG T V++P L FDIG I + +TH HLDH GLP Y++ R
Sbjct: 9 GYLFEGISEGGIRTSVVMPRLSLMFDIGHQNPNRINIERLLLTHAHLDHSAGLPYYISQR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L L PP I++P +++ + ++ ++ + + ++ LD GE E+ + +K
Sbjct: 69 SLRKLGPPKIYLPKTLEAPMREILSLYSKIEDFPYLYEMKGLDEGEEIEIDAYHFFKIWK 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H + SQGY IY +KKL+ ++ L ++ K K+ G++I ++ P V+F+GDT E+
Sbjct: 129 TFHRVDSQGYTIYERKKKLRSEFAGLDRNELLKKKEEGIDINEVHSKPLVSFSGDTKIEY 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+L + D ++IL E T++D E SIE A++ GH HL EI+ + +N+ ++L HFS
Sbjct: 189 VLA--HKDVAESEILFLECTYIDHERSIEDAREWGHIHLDEILHHISSFKNEKIVLIHFS 246
Query: 320 SRYHIEDIRQAVLK 333
RY IR+ + K
Sbjct: 247 KRYPPSYIRKILHK 260
>gi|42523833|ref|NP_969213.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
gi|39576040|emb|CAE80206.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus HD100]
Length = 280
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 154/269 (57%), Gaps = 5/269 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y G+S+ G T + +PEL +FD+ + I FI+HGHLDH G+P ++ R
Sbjct: 14 YKFHGMSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAAGIPYIISQRA 73
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ +L P ++P ++ E ++K+ ++ + N + + V + + + ++ F T
Sbjct: 74 MNSLPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFVPVKADDEIPLNPQAFIKVFPT 133
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H I S GY ++ + KKLKK+Y+ LK +I L++ G+E+ + P V+FTGDT EF
Sbjct: 134 THRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVSFTGDTQIEF- 192
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L+ R ++KILI E+T+LDD+ S+EHA+ GHTH+ EII K I ++ +++ H SS
Sbjct: 193 LDSRPW-VRQSKILIMESTYLDDKKSVEHARTWGHTHIDEIIPRLKDIESEKIVIIHASS 251
Query: 321 RYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
RY ++A+ LQ K+ A+ E F
Sbjct: 252 RY---SDKEALRLLQEKIPAEYRDRVELF 277
>gi|283777841|ref|YP_003368596.1| hypothetical protein Psta_0039 [Pirellula staleyi DSM 6068]
gi|283436294|gb|ADB14736.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 279
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 138/252 (54%), Gaps = 2/252 (0%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
TIEG S ++ IPE+K FD+G P + + F+TH HLDHI LP+YVA R +
Sbjct: 16 TIEGYSRAAVQSYWRIPEMKIGFDLGAQPWDFMGTSTWFVTHTHLDHIAALPVYVARRRM 75
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTH 201
+ PP I+VP + E++ ++ L L DL + G+ E+ ++VV T
Sbjct: 76 MKMDPPLIYVPEHSRALCEEVLKVFSRLDRGRLPCDLRGVKPGDEIELSRELVVTASATK 135
Query: 202 HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFML 261
H +PS GYV++ R KLK +Y L G+QI ++ SG+E+T+ P++A+ GD++ E +
Sbjct: 136 HTVPSVGYVVWQRRNKLKDEYQGLSGEQIRDIRLSGMEVTEEKRFPQLAYLGDSSPEGLD 195
Query: 262 NPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
N AKILITE TF+ E +HGH HL + +E +N+ ++ H S+R
Sbjct: 196 N--CPAMYEAKILITEMTFVAPGHRKEKIHKHGHMHLDDYVERKDRFKNELIIAAHASTR 253
Query: 322 YHIEDIRQAVLK 333
Y ++ V K
Sbjct: 254 YQDRQVKHYVQK 265
>gi|301122551|ref|XP_002909002.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
gi|262099764|gb|EEY57816.1| nuclear ribonuclease Z, putative [Phytophthora infestans T30-4]
Length = 283
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 155/275 (56%), Gaps = 11/275 (4%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
K +D GYT+ S+ G E+C + + AFD+G R + ++ VFITHGH+DHIG +
Sbjct: 4 KVVDAGGYTLHLRSVAGIESCCYVDSIDIAFDLGCLVGRVVNKSHVFITHGHIDHIGAVV 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-GNVELNLDLVALDVGETYEMRND 192
+ A R L KP + FVP ++ +E + + + G+ +V L + +
Sbjct: 64 AHAARRALQKQKPASYFVPAHLEPHLESILKSTAVMQGDAPFPAKIVPLQPFDEVHISAK 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+VR T H +PS GY++Y + +LK +Y L G +I LK++G EIT L+PE+A+T
Sbjct: 124 YLVRAVPTKHRVPSLGYILYEKKNRLKPEYRQLPGVEIAALKRAGQEITSAELTPEIAYT 183
Query: 253 GDTTSEFM----LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
GDTT E +N D L+ K+LITEAT+ D +M+I+ A GH HL ++ +
Sbjct: 184 GDTTIEVFTTAAVNEGTKDLLQVKVLITEATYADSKMTIQDAVARGHMHLDQLAIHENLF 243
Query: 309 RN-KAVLLTHFSSRYHIEDIRQAV-----LKLQSK 337
++ +++L HFS+RY E++ Q++ L LQ K
Sbjct: 244 QHVGSLVLVHFSARYSTEELAQSIQTRLPLSLQHK 278
>gi|398342621|ref|ZP_10527324.1| metallo-beta-lactamase [Leptospira inadai serovar Lyme str. 10]
Length = 276
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 146/267 (54%), Gaps = 10/267 (3%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y+ EG+S GG T +I+ L FDIG I + +TH HLDH G+P YV+ R
Sbjct: 10 YSYEGISEGGIRTSIIMSNLNLMFDIGHQNPNKIHIGKLLLTHAHLDHSAGIPYYVSQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L L PP I+VP ++ + ++ ++ + + +L + GE E+ +P++T
Sbjct: 70 LRKLTPPKIYVPKELEIPLHEILALYSKIEDFPYRYELFGVAEGEEVEIDPYHTFKPWRT 129
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H + SQGY +Y +KKLK ++ L ++ + KK I +II P V+F+GDT E++
Sbjct: 130 FHRVVSQGYTVYERKKKLKTEFQGLSAAELAERKKVSGPIDEIISKPVVSFSGDTKIEYV 189
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L + D ++++ E T++D+E + A++ GH HL EI+ N +N+ ++L HFS
Sbjct: 190 LT--HKDVAESEVVFLECTYIDEERDVSKAREWGHIHLDEILHNLSAFKNEKIVLIHFSK 247
Query: 321 RYHIEDIRQAVLKLQSKVSAKVVPLTE 347
RY I I+ KV AK +P +E
Sbjct: 248 RYPIPYIK--------KVIAKKIPASE 266
>gi|32476124|ref|NP_869118.1| hypothetical protein RB9875 [Rhodopirellula baltica SH 1]
gi|32446668|emb|CAD76504.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 280
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 14 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 73
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 74 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 133
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 134 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 193
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ N N + +KILI+E TF E +HGH H+ + E A +N+ ++ +H
Sbjct: 194 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHA 251
Query: 319 SSRYHIEDIRQAVLK 333
S+RY IR+ V K
Sbjct: 252 STRYTDVQIRRFVKK 266
>gi|440717705|ref|ZP_20898186.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
gi|436437128|gb|ELP30792.1| hypothetical protein RBSWK_05246 [Rhodopirellula baltica SWK14]
Length = 279
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/255 (36%), Positives = 141/255 (55%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ N N + +KILI+E TF E +HGH H+ + E A +N+ ++ +H
Sbjct: 193 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHA 250
Query: 319 SSRYHIEDIRQAVLK 333
S+RY IR+ V K
Sbjct: 251 STRYTDVQIRRFVKK 265
>gi|291333995|gb|ADD93671.1| hypothetical protein DSM3645_01615 [uncultured marine bacterium
MedDCM-OCT-S04-C7]
Length = 279
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G T+EG S ++ IPELK FD+G P + + F++H HLDHI LP+YVA
Sbjct: 13 KGLTVEGYSRAAVQSYWRIPELKLGFDLGGQPWGFMATSTWFLSHTHLDHIAALPVYVAR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PPTI+VP +E+L L L L+ GE E+ + VV
Sbjct: 73 RRMMKMDPPTIYVPEKAVVKIERLLRAVSDLDKGRLPCTLLPAHPGEEIELSREHVVTVS 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
T H +PS GYV++ R+KLK +Y L G QI L+ SG+++TD + +P V + GD+ +
Sbjct: 133 STCHTLPSVGYVVWERRRKLKNEYQELSGNQIRDLRLSGIDVTDEVRTPLVGYLGDSNPD 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ R A ILI E TF+ E+ ++GH HL + + + +N ++ H+
Sbjct: 193 GL--DRCPAMYEAMILIAEMTFVAKSHRRENIHKYGHMHLEDFLARRERFQNDVIIAAHY 250
Query: 319 SSRYHIEDIRQAVLK 333
S+RY E IRQ + K
Sbjct: 251 STRYTDERIRQILSK 265
>gi|426404322|ref|YP_007023293.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425860990|gb|AFY02026.1| metallo-beta-lactamase superfamily protein [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 280
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 154/269 (57%), Gaps = 5/269 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y G+S+ G T + +PEL +FD+ + I FI+HGHLDH G+P ++ +
Sbjct: 14 YKFHGLSLSGIRTAISMPELSLSFDVAQGYPFLINLKQFFISHGHLDHAAGIPYIISQKA 73
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ ++ P ++P ++ E ++K+ ++ + N + + + + + + ++ F T
Sbjct: 74 MNSMPPGKFYMPGTLVEPLDKIMKLWEQIENHQYKYEFIPVKADDEIPLNPQAFIKVFPT 133
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
H I S GY ++ + KKLKK+Y+ LK +I L++ G+E+ + P V+FTGDT EF
Sbjct: 134 THRIESYGYTLFEVHKKLKKEYLGLKQDEIVDLRRQGLEVNETTNIPVVSFTGDTQIEF- 192
Query: 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
L+ R ++K+LI E+T+LDD+ S+EHA+ GHTH+ EII K I ++ +++ H SS
Sbjct: 193 LDSRPW-VRQSKVLIMESTYLDDKKSVEHARTWGHTHIDEIIPRLKDIESEKIVIIHASS 251
Query: 321 RYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
RY ++A+ LQ K+ A+ E F
Sbjct: 252 RY---SDKEALRLLQEKIPAEYRDRVELF 277
>gi|449133562|ref|ZP_21769112.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
gi|448887727|gb|EMB18085.1| hypothetical protein RE6C_01167 [Rhodopirellula europaea 6C]
Length = 279
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +L+ L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPIIYLPDSAVDMAWKVLQTFRSLDRGAMPCELIGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ N N + +KILI+E TF E +HGH H+ + E A +N+ ++ +H
Sbjct: 193 GLDN--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHA 250
Query: 319 SSRYHIEDIRQAVLK 333
S+RY IR+ V K
Sbjct: 251 STRYTDVQIRRFVKK 265
>gi|383768034|ref|YP_005447017.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
gi|381388304|dbj|BAM05120.1| putative ribonuclease Z [Phycisphaera mikurensis NBRC 102666]
Length = 313
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 143/256 (55%), Gaps = 12/256 (4%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+ ++G+SI G E+ V +PEL FDIG CP + FV +THGH+DH+ G+ Y + R
Sbjct: 31 FRVQGLSIAGEESVVAVPELDVCFDIGSCPKAVLPSPFVALTHGHMDHVAGIAYYFSQRP 90
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
+ T+ PPS+++ ++ L + + + + L L GE E++N+ +RPF+T
Sbjct: 91 FQGMSAGTVVCPPSLRDGLDGLMKAWQKIERQKTPYTLTPLADGEMLEIKNNHFLRPFRT 150
Query: 201 HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT-SEF 259
H +PS GY + R KLK + + + ++I + K +G I D P V++TGDT +
Sbjct: 151 VHTVPSSGYSVLEKRTKLKPKLVGMPQEEIVRRKNAGEAIVDTRFVPLVSYTGDTGWGDH 210
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHG---HTHLSEIIENAKWIRNKA-VLL 315
+L P + L ++LITE TF M H ++ G H HL I+E + + ++ V+L
Sbjct: 211 LLIP---EVLECRVLITECTF----MERGHRRRAGVGKHLHLDHIVELVEQVGDETDVIL 263
Query: 316 THFSSRYHIEDIRQAV 331
TH S R H+ D R+A+
Sbjct: 264 THLSRRTHMNDARKAL 279
>gi|417304309|ref|ZP_12091337.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
gi|327539420|gb|EGF26036.1| hypothetical protein RBWH47_01231 [Rhodopirellula baltica WH47]
Length = 279
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 141/255 (55%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ + N + +KILI+E TF E +HGH H+ + E A +N+ ++ +H
Sbjct: 193 GLDS--NPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHA 250
Query: 319 SSRYHIEDIRQAVLK 333
S+RY IR+ V K
Sbjct: 251 STRYTDVQIRRFVKK 265
>gi|421614182|ref|ZP_16055247.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
gi|408495048|gb|EKJ99641.1| hypothetical protein RBSH_05058 [Rhodopirellula baltica SH28]
Length = 279
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 140/255 (54%), Gaps = 2/255 (0%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+G TIEG S +TC + ELK FD+G P + +FI+H HLDHI LP YV+
Sbjct: 13 DGLTIEGYSRAAVQTCWRVNELKLLFDVGVQPWDFMGTPTMFISHAHLDHIAALPAYVSR 72
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
R + + PP I++P S + K+ + RSL + +LV L G+ ++ + VV+
Sbjct: 73 RRMMKMDPPVIYLPDSAVDMAWKMLQTFRSLDRGAMPCELVGLLDGDETKIGREYVVKSM 132
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
HH I + G+++Y R KLK +Y+ L G++I LK +G EIT P A+TGDT+ +
Sbjct: 133 NVHHTIDALGFIVYQRRHKLKPEYLDLPGEKIRDLKMAGTEITTEQRVPVFAYTGDTSPK 192
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ N + +KILI+E TF E +HGH H+ + E A +N+ ++ +H
Sbjct: 193 GL--DSNPEFYESKILISELTFAAPEHRRSKIHKHGHMHVDDYRERADNFKNELIIGSHA 250
Query: 319 SSRYHIEDIRQAVLK 333
S+RY IR+ V K
Sbjct: 251 STRYTDVQIRRFVKK 265
>gi|418741772|ref|ZP_13298146.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090109|ref|ZP_15550910.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410001372|gb|EKO51986.1| beta-lactamase family protein [Leptospira kirschneri str.
200802841]
gi|410751220|gb|EKR08199.1| beta-lactamase family protein [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 227
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 131/213 (61%), Gaps = 2/213 (0%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVA 180
+TH HLDH GLP Y++ R L LKPP IFVP +++ + K+ +++ + N +L A
Sbjct: 2 LTHSHLDHSSGLPYYISQRSLRKLKPPRIFVPAPLEKPMRKILDLYSEIENFTYAYELSA 61
Query: 181 LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEI 240
+ G+ ++ ++ P +T H +PSQGY +Y RKKLKK++ + ++ + K +E+
Sbjct: 62 VSPGDKIDLDSNHFFSPHQTFHRVPSQGYTLYQKRKKLKKEFQSISQNELNQALKEKIEV 121
Query: 241 TDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300
+++ P ++F+GDT E++L + D + IL E T++DDE ++ A++ GHTHL E
Sbjct: 122 SELSEIPVISFSGDTKIEYVLE--HEDVANSSILFIECTYIDDERNVAQAREWGHTHLDE 179
Query: 301 IIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
I++N +N+ ++L HFS RY + IR+ + K
Sbjct: 180 ILDNLSSFKNEKIVLIHFSKRYSVSYIREVLDK 212
>gi|87307110|ref|ZP_01089256.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
gi|87290483|gb|EAQ82371.1| hypothetical protein DSM3645_01615 [Blastopirellula marina DSM
3645]
Length = 279
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 143/262 (54%), Gaps = 10/262 (3%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
+ +++ TIEG S ++ IPE+K FD+G P + F+TH HLDH+ LP
Sbjct: 8 RKLEVNDLTIEGYSRAAVQSYWRIPEMKVLFDLGLQPWDFMGTPTSFVTHAHLDHVAALP 67
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193
+YV+ R + + PPTI++P + V+++ + L + +L+ + G+ E+ ++
Sbjct: 68 VYVSRRRMMKMDPPTIYLPETAIGPVQQMLSAFQRLDRGGMPCELIGVKPGDEIELSREL 127
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+V T H IPS GY+++ R+KLK +Y +L G QI ++ SGV++TD P++A+ G
Sbjct: 128 LVTVVPTKHTIPSVGYIVWQRRRKLKPEYQNLPGDQIRDIRLSGVDVTDEHRFPKLAYLG 187
Query: 254 DTTSEFMLNPRNADAL----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
D+ E M DA A+ LI E TFL + E + GH HL ++++ +
Sbjct: 188 DSRPEAM------DACPAFYEAETLIMEMTFLAPDHRREKIHKMGHIHLDDVVDRRDRFQ 241
Query: 310 NKAVLLTHFSSRYHIEDIRQAV 331
NK ++ HFS RY+ I+ V
Sbjct: 242 NKTIIAGHFSVRYNDRQIKNYV 263
>gi|325186919|emb|CCA21463.1| nuclear ribonuclease Z putative [Albugo laibachii Nc14]
Length = 295
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 7/262 (2%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
Y I S G E+ I E+ D G C A ++ VFITHGH+DHI G+ + A R
Sbjct: 6 NYRIHVRSTAGIESAYYIDEIDIMLDCGVCFDLAYTKSNVFITHGHVDHIQGIVAHAARR 65
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L +L VP + +V+ + + + + +L+ + + +++ +D +V+ +K
Sbjct: 66 ALMSLPTANYHVPHWLVSEVQNILSSYSKMQEKTIQANLIPVKEKDEFKISHDHIVKAYK 125
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
T H +PS GYV+Y K LK+++++L +I + K G+E+ I + PE+A+TGDTT +
Sbjct: 126 TFHRVPSLGYVVYKRNKALKQEFVNLSFLEIAGISKQGIELNVISIDPEIAYTGDTTMQL 185
Query: 260 M------LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN-KA 312
+ D LRAK+LITEAT++D IE A+ GH HL ++I +A N +
Sbjct: 186 FHAEGCSYDGTKNDFLRAKVLITEATYIDKAALIEKAEDRGHIHLEQVINDAYLFENVQQ 245
Query: 313 VLLTHFSSRYHIEDIRQAVLKL 334
+++TH S+RY+ D +L
Sbjct: 246 LIITHTSARYNEHDFNACRERL 267
>gi|262195938|ref|YP_003267147.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
gi|262079285|gb|ACY15254.1| ribonuclease Z family protein [Haliangium ochraceum DSM 14365]
Length = 290
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 135/249 (54%), Gaps = 3/249 (1%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
GY+I GVS+GG T +++ EL FD+G + +F++H H+DH+GGL ++ R
Sbjct: 16 GYSIRGVSVGGVYTSMMVSELGAMFDVGMALRSFSGADRLFLSHAHMDHLGGLLAFLGMR 75
Query: 140 GLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
G Y + +P +F+P +I E V+ L L L + V ++ G+ E+R D+ VR
Sbjct: 76 GAYGVERPLEVFLPAAIAEPVQALLRAAEPLQRFPLKIATVPMEPGQVVELRRDLSVRAL 135
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+T H +PS GY + KL+ ++ L G +I + +++G ++ E+A+ DT
Sbjct: 136 RTFHPVPSLGYQFFRRVSKLRDEFRDLPGAEIGRRRRAGEDLFREETHLELAYVTDTLVR 195
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ LR+K+LI E TFLD S+ ++ H HL E++E A N+A++L HF
Sbjct: 196 VLDT--EPSLLRSKVLILECTFLDQRKSLADSRAGCHIHLDELLERADSFENEALVLMHF 253
Query: 319 SSRYHIEDI 327
S Y ++
Sbjct: 254 SQLYKPREV 262
>gi|374585646|ref|ZP_09658738.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
gi|373874507|gb|EHQ06501.1| metallo-beta-lactamase [Leptonema illini DSM 21528]
Length = 283
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 139/263 (52%), Gaps = 4/263 (1%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144
G S GG TC+ +P+ + FD G R + + ++HGHLDH GL ++ R L L
Sbjct: 15 GNSEGGTHTCIALPQYRLLFDTGVGSARLTEYPLILLSHGHLDHASGLAYLISQRSLRKL 74
Query: 145 KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
PP I+VPP + E + ++ ++ + + L A+D Y ++ + R ++ H +
Sbjct: 75 APPEIYVPPEVYEPLTQIMKLWGDIEDYHSQFHLHAVDYDRHYPLKGNQFFRAIRSSHRV 134
Query: 205 PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPR 264
PS GY I KLK ++++L GK+I + K +G + + P + F+GDTT EF+
Sbjct: 135 PSNGYSIVEKVLKLKPEHLNLPGKEIARRKATGENLFNETYQPIITFSGDTTIEFVTE-- 192
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN-KAVLLTHFSSRYH 323
N +++IL E T++ ++ A++ GH HL EI+ NA+ R + + L HFS RY
Sbjct: 193 NEIVQKSRILFLECTYICEKRQTARAREWGHIHLDEIVANAEAFREVEKLFLIHFSPRYG 252
Query: 324 IEDIRQAV-LKLQSKVSAKVVPL 345
++ + + KL + A+ P
Sbjct: 253 RREVEETLKRKLPDWLYARTTPF 275
>gi|444918946|ref|ZP_21239000.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
gi|444709229|gb|ELW50252.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Cystobacter fuscus DSM 2262]
Length = 283
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 142/257 (55%), Gaps = 6/257 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YTI G+S+GG T + +PEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTIRGISVGGVYTSLQVPELGVVLDAG-VPIRSFAGTDRIFLSHGHSDHASALGSLLGIR 68
Query: 140 GLYNLK-PPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
GL PP +F+P I+ + + + L LN++ V + G+T+ + + + VR F
Sbjct: 69 GLIGKDTPPRVFLPAEIEAPLRETLAVQGRLLRASLNVETVPMLPGDTHSLGHGLWVRAF 128
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+THH +PS GY + KLK ++ HL ++I + +K+G ++ D + E+A+ DT S
Sbjct: 129 RTHHPVPSLGYQFFRRVSKLKPEHQHLLPEEIARGRKAGADLFDEVERLELAYATDTLSR 188
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ + + +++LI E TFLD + ++ AQ+ H H EI A+ +N+A++L HF
Sbjct: 189 VLET--SPELFDSRVLILECTFLDGKRTVTDAQERSHLHFEEISARAERFQNEALVLMHF 246
Query: 319 SSRYHIEDIRQAVLKLQ 335
S Y ++ AVL+ Q
Sbjct: 247 SQAYSPAEV-HAVLRAQ 262
>gi|383456700|ref|YP_005370689.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
gi|380734183|gb|AFE10185.1| ribonuclease Z family protein [Corallococcus coralloides DSM 2259]
Length = 282
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 131/243 (53%), Gaps = 4/243 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-NFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T +++PEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTVRGVSVGGVYTSLLVPELGVLLDAG-IPIRSFATTDRIFLSHGHADHASALGSLLGIR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L PP +++P I+ V++ L ++ ++ V + G+T +++ D+ VR F+
Sbjct: 69 ALVGKGPPFVYLPAEIEAPVQEALAALGRLHRMKSDIRTVPMRPGDTVKVQQDLWVRAFR 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY KLK ++ L +I + +++G + D + E+A+ DT S
Sbjct: 129 THHPVPSLGYQFLRRVAKLKPEFRELPPAKIGRRRQAGEPLFDEVERLELAYCTDTLSNV 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ R +++LI E TF+D E ++ AQ+ H HL EI A +N+A++L HFS
Sbjct: 189 L--ERQPSLFDSRVLILECTFIDAERTVRDAQERAHIHLEEIASMADRFQNEALVLMHFS 246
Query: 320 SRY 322
Y
Sbjct: 247 QAY 249
>gi|443700634|gb|ELT99514.1| hypothetical protein CAPTEDRAFT_108450, partial [Capitella teleta]
Length = 242
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 133/234 (56%), Gaps = 9/234 (3%)
Query: 118 FVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL-----GNV 172
+ +HGH DHI G+ + A R LYN++P + ++P +++ ++ + E L G
Sbjct: 1 LLICSHGHTDHIAGIASHAAKRSLYNMRPASYYIPAHLEKPLDLIAETFSQLNESQEGRG 60
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+N V E ++ N V+ F T H + SQGY++Y K K +Y +LK +++ +
Sbjct: 61 RIN-TCVVTPTSEPIQLPNGYKVKVFPTQHRVASQGYIVYRSEKLRKPEYANLKNEEMRE 119
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS-IEHAQ 291
L +SG++ + + +P +A+TGDT E P D LR ++LITEAT++DD S I A+
Sbjct: 120 LIQSGIDFSYLKETPLLAYTGDTLPEIYDEPFTPDLLRVRLLITEATYIDDNPSAIPKAR 179
Query: 292 QHGHTHLSEIIENAKWIRN-KAVLLTHFSSRYHIEDIRQAVLK-LQSKVSAKVV 343
+ GHTHL EII+ + R+ + +LL HFS +Y IRQ + L + + KV+
Sbjct: 180 EWGHTHLQEIIDRKEKFRDLERILLVHFSDKYSARYIRQRTAEMLPNNLKQKVI 233
>gi|338534590|ref|YP_004667924.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
gi|337260686|gb|AEI66846.1| ribonuclease Z family protein [Myxococcus fulvus HW-1]
Length = 282
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 131/248 (52%), Gaps = 4/248 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T + +PEL D+G P R+ + +F++H H DH GL + R
Sbjct: 10 YTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGSLLGIR 68
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+ +V+ + L + + + V + G+ + + + VR F+
Sbjct: 69 RLIGKGAPQVFLPAEIESNVQASLAVMSRLHHTAMEVHTVPMLPGDVRPLGHGLFVRAFR 128
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY + KL+ ++ L ++I K +++G ++ D + E+A+ DT S
Sbjct: 129 THHPVPSLGYQFFRRISKLRPEFQSLPPQEIAKRRQAGEDLFDEVERLELAYATDTVSRV 188
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ +++LI E TF+D ++E AQ H HL E+I A RN+A++L HFS
Sbjct: 189 LET--EPSLFESRVLILECTFIDARHTVEDAQARAHLHLDELIARADQFRNEALVLMHFS 246
Query: 320 SRYHIEDI 327
+ E +
Sbjct: 247 QAFSPEAV 254
>gi|406878875|gb|EKD27670.1| Metallo-beta-lactamase [uncultured bacterium]
Length = 241
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 127/245 (51%), Gaps = 30/245 (12%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
L IEG+SI G ET + +P+L FDIG+CP +A+ + ITHGH+DHIGG+ Y+
Sbjct: 3 LNQIKIEGISIAGEETNIRMPKLGIMFDIGKCPEKAVSIPNLLITHGHVDHIGGIAHYLF 62
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+R + + PP I+ PPS+ ++++ I + + + ++++ E + + + ++
Sbjct: 63 ARTIKKMTPPHIYAPPSLIPPIKQIVRIFADIHKSDYPANYHSMELNEFHNINKKLFIKV 122
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
H IP+ Y++Y +K +P ++FTGDTT
Sbjct: 123 IPASHTIPTYCYLLYKTKKD----------------------------NPFLSFTGDTTI 154
Query: 258 EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
E + N N ++ IL+ E TF D+ IE A + H H+ +I+E AK +N+ ++L H
Sbjct: 155 EILEN--NPLLYKSGILMIECTFFGDKKQIEKADAYHHIHIDQILERAKHFKNEYIVLCH 212
Query: 318 FSSRY 322
S RY
Sbjct: 213 KSPRY 217
>gi|149918433|ref|ZP_01906923.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
gi|149820733|gb|EDM80143.1| Metallo-beta-lactamase [Plesiocystis pacifica SIR-1]
Length = 279
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 4/246 (1%)
Query: 78 LEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVA 137
+ G + GV+ GG ET + +PEL FDIG CP +A+ + + I+HGH DH+GG+ Y++
Sbjct: 11 VSGLRLVGVTEGGVETNLRVPELGVMFDIGMCPPKALGFDRLLISHGHADHLGGIHYYLS 70
Query: 138 SRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
RG+ K PTI P ++ +E++ E+ ++ + DL G+ E+ +
Sbjct: 71 QRGMRKQKVPTIAAPKALAPQLEQMLELWSAVEGFDYRYDLRPAGPGDRVELGRGLTAIA 130
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT- 256
T H +PS +VI KL + ++I K+ G IT+ P + +GDTT
Sbjct: 131 VPTVHRVPSLAWVIERRVNKLLPAFQGKPNQEIRAAKERGETITESTDVPLLCVSGDTTI 190
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
F+ +P + K+L+ E T D +E + +GHTH+ EIIE+A+ +A++L
Sbjct: 191 DAFLASPL---MRQVKVLVHECTSWSDTRGVEDTRAYGHTHVDEIIEHAERFEGEALVLV 247
Query: 317 HFSSRY 322
H S R+
Sbjct: 248 HRSLRH 253
>gi|108757572|ref|YP_631594.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
gi|108461452|gb|ABF86637.1| ribonuclease Z family protein [Myxococcus xanthus DK 1622]
Length = 306
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 127/240 (52%), Gaps = 4/240 (1%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASR 139
YT+ GVS+GG T + +PEL D+G P R+ + +F++H H DH GL + R
Sbjct: 34 YTVRGVSVGGVYTSLQVPELDVVLDVG-LPIRSFCGSDRIFLSHAHPDHASGLGSLLGIR 92
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+E+V+ + L + + + V + G+ + + VR F+
Sbjct: 93 RLIGKGAPQVFLPAEIEENVQASLAVMSRLHHTSMEVHTVPMLPGDVRPLGQGLFVRAFR 152
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY + KL+ ++ L ++I + +++G + D + E+A+ DT S
Sbjct: 153 THHPVPSLGYQFFRRVAKLRLEHQSLPPQEIARRRQAGEALFDEVERLELAYATDTLSRV 212
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ +++LI E TF+D S++ AQ H H+ E++ A RN+A++L HFS
Sbjct: 213 LDT--EPGLFDSRVLILECTFVDARHSVQDAQAKAHLHVDELLARADQFRNEALVLMHFS 270
>gi|356498042|ref|XP_003517863.1| PREDICTED: LOW QUALITY PROTEIN: nuclear ribonuclease Z-like,
partial [Glycine max]
Length = 205
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 44/206 (21%)
Query: 130 GGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM 189
GGLPMYVA GLY ++PPT VP +KEDVEKLFEIHR + +EL +L+ LDVG + +
Sbjct: 2 GGLPMYVAMLGLYRMEPPTNIVPILVKEDVEKLFEIHRKMYQLELKHNLIGLDVGXEFHL 61
Query: 190 RNDIVVRPFKTHHVIPSQ--------GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEIT 241
D+ V+ F+T HVIP+ GY++Y ++KLK++YI L G +I+ LK G+E
Sbjct: 62 IKDLKVKAFRTCHVIPTXPGSQPTQCGYILYSEKQKLKQEYIGLSGNEIKNLKSFGME-- 119
Query: 242 DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG-HTHLSE 300
RA + L++ +++EHA+ +G H +LS
Sbjct: 120 ----------------------------RA----SHINLLNNSITVEHARDYGIHVNLSG 147
Query: 301 IIE-NAKWIRNKAVLLTHFSSRYHIE 325
I + ++N+A+LL HFS+RY +E
Sbjct: 148 FINLYVERLQNRAILLIHFSARYTVE 173
>gi|261416710|ref|YP_003250393.1| hypothetical protein Fisuc_2325 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373166|gb|ACX75911.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 295
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 147/273 (53%), Gaps = 22/273 (8%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+D I G SI G T + IPEL D+G CP AI N VF+TH H DH L +
Sbjct: 16 VDTPCSPISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRH 75
Query: 136 VASRGLYNLKPPTIF-VPPSIKEDV------EKLFEIHRSLGNVELNL-DLVALDVGET- 186
+ R + ++ +++ +P + E+ E LFE +G + ++ + GE
Sbjct: 76 HSLRKMMGVERDSVYYMPECVSENAKAWIKAEALFE---GVGEAKFRYPEIEPVTAGELQ 132
Query: 187 -YEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL 245
R D+ + F+ H IP+ G +Y +KKLK +++ +I +L+K+GVEIT +
Sbjct: 133 FLRYRKDLALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVY 192
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEII-- 302
P V+F GD E +L+ N+ ++K+LITE TFLDD E ++ +++ GH+HL +I+
Sbjct: 193 DPLVSFMGDCLGESLLD--NSRVFQSKVLITECTFLDDGEEAM--SKKKGHSHLKDIVHA 248
Query: 303 --ENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
E I+ + ++L+HFS +Y IR+ + K
Sbjct: 249 LNELDDEIKCEKIILSHFSMKYSERHIREMLDK 281
>gi|385791550|ref|YP_005822673.1| hypothetical protein FSU_2875 [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326957|gb|ADL26158.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 308
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 145/266 (54%), Gaps = 22/266 (8%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
I G SI G T + IPEL D+G CP AI N VF+TH H DH L + + R +
Sbjct: 36 ISGFSISGLATYIQIPELDFCIDMGECPLSAIPLNHVFLTHAHGDHARCLMRHHSLRKMM 95
Query: 143 NLKPPTIF-VPPSIKEDV------EKLFEIHRSLGNVELNL-DLVALDVGET--YEMRND 192
++ +++ +P + E+ E LFE +G + ++ + GE R D
Sbjct: 96 GVERDSVYYMPECVSENAKAWIKAEALFE---GVGEAKFRYPEIEPVTAGELQFLRYRKD 152
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ + F+ H IP+ G +Y +KKLK +++ +I +L+K+GVEIT + P V+F
Sbjct: 153 LALEAFEVKHSIPAMGGTLYFYKKKLKDEFLGKTPAEIIELRKNGVEITREVYDPLVSFM 212
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEII----ENAKW 307
GD E +L+ N+ ++K+LITE TFLDD E ++ +++ GH+HL +I+ E
Sbjct: 213 GDCLGESLLD--NSRVFQSKVLITECTFLDDGEEAM--SKKKGHSHLKDIVHALNELDDE 268
Query: 308 IRNKAVLLTHFSSRYHIEDIRQAVLK 333
I+ + ++L+HFS +Y IR+ + K
Sbjct: 269 IKCEKIILSHFSMKYSERHIREMLDK 294
>gi|405351348|ref|ZP_11022831.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Chondromyces apiculatus DSM 436]
gi|397093239|gb|EJJ23962.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Myxococcus sp. (contaminant ex DSM 436)]
Length = 266
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 5/257 (1%)
Query: 88 IGGHETCVIIPELKCAFDIGRCPTRAI-QQNFVFITHGHLDHIGGLPMYVASRGLYNLKP 146
+GG T + +PEL D+G P R+ + +F++H H DH GL + R L
Sbjct: 1 MGGVYTSLQVPELDVVLDVG-LPIRSFCGTDRIFLSHAHPDHASGLGSLLGVRRLIGKGA 59
Query: 147 PTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPS 206
P +F+P I+ +V++ + L + +++ V + G+ + + + VR F+THH +PS
Sbjct: 60 PQVFLPAEIEANVQEALAVLSRLHHTAMDVRTVPMHPGDVQPLGHGLFVRAFRTHHPVPS 119
Query: 207 QGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA 266
GY + KL+ ++ L + I + +++G ++ D + E+A+ DT S +
Sbjct: 120 LGYQFFRRITKLRPEHQGLPPQDIARRRQAGEDLFDTVERLELAYATDTVSRVLET--EP 177
Query: 267 DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
++ILI E TF+D ++E AQ H HL E+I A RN+A++L HFS + E
Sbjct: 178 SLFDSRILILECTFIDARHTVEDAQARAHLHLDELIARASQFRNEAIVLMHFSQAFAPES 237
Query: 327 IRQAV-LKLQSKVSAKV 342
+ + +L S++S +V
Sbjct: 238 VHATLRARLPSELSERV 254
>gi|115377210|ref|ZP_01464422.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|310821192|ref|YP_003953550.1| hypothetical protein STAUR_3935 [Stigmatella aurantiaca DW4/3-1]
gi|115365793|gb|EAU64816.1| nuclear ribonuclease Z, putative [Stigmatella aurantiaca DW4/3-1]
gi|309394264|gb|ADO71723.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 283
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YT+ G+S+GG T + IPEL D G P R+ + +F++HGH DH L + R
Sbjct: 10 YTVRGISLGGVYTSLQIPELGVVLDAG-VPIRSFAGTDRLFLSHGHPDHSSALGSLLGIR 68
Query: 140 GLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
GL P +F+P I+ V++ L + + GE + + + VR F
Sbjct: 69 GLVGKAAPLQVFLPAEIEAAVQEALAAAGRLHRSSTTIQAFPMLPGEERHLSHGLWVRAF 128
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
+THH PS GY KLK ++ + G++I +L+K G ++ + E+A+ DT S+
Sbjct: 129 RTHHAGPSLGYQFLRRVTKLKPEHQAMPGEEIARLRKQGADLFETTERLELAYATDTLSD 188
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ + L +++LI E T+LD + E A++ HTHL EII A +N+A++L HF
Sbjct: 189 VLET--APEVLHSRVLILECTYLDAKHPAEAARERLHTHLDEIIARADRFQNEALVLMHF 246
Query: 319 SSRYHIEDI 327
S Y E +
Sbjct: 247 SQAYSPEQV 255
>gi|442321491|ref|YP_007361512.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
gi|441489133|gb|AGC45828.1| ribonuclease Z family protein [Myxococcus stipitatus DSM 14675]
Length = 283
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 130/249 (52%), Gaps = 6/249 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ-QNFVFITHGHLDHIGGLPMYVASR 139
YT+ G+S+GG T + +PEL D+G P R+ +F++H H DH L + R
Sbjct: 11 YTVRGISVGGVYTSLQVPELDVVLDVG-VPIRSFAGTERIFLSHAHPDHASALGALLGIR 69
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFK 199
L P +F+P I+ V + E+ L + + V + G+ + + VR F+
Sbjct: 70 RLLGKGAPQLFLPAEIEPTVREALEVLSRLHHTPMEARTVPMLPGDVQPLGQGLHVRAFR 129
Query: 200 THHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF 259
THH +PS GY KL+ +++ + ++I + +K+G ++ + E+A+ DT +
Sbjct: 130 THHPVPSLGYQFLRRVTKLRPEHLGMPPQEIAQRRKAGEDLFTEVDHLELAYATDTLARV 189
Query: 260 M-LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+ P D +++L+ E TF+D + S++ A+ H HL E+I +A RN+A++L HF
Sbjct: 190 LETEPMLFD---SRVLVIECTFVDPKRSVQDARDRAHLHLDELIAHADRFRNEALVLMHF 246
Query: 319 SSRYHIEDI 327
S E++
Sbjct: 247 SQSVGPEEV 255
>gi|413921296|gb|AFW61228.1| hypothetical protein ZEAMMB73_071826 [Zea mays]
Length = 306
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 95/164 (57%), Gaps = 45/164 (27%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I+++GY ++GVSIGG ETCVI P L AFDIGRCP
Sbjct: 35 IEIKGYPVDGVSIGGQETCVIFPTLSLAFDIGRCP------------------------- 69
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
L+PPTIFVP +++ VE+LFE+H ++ +LN +LV L+V E YE+R D+
Sbjct: 70 -------QLRPPTIFVPACLRDLVERLFEVHHAMDQSDLNHNLVPLEVREEYELRRDL-- 120
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
+GYVIY +++KLK+++I L G +I++LK SGVE
Sbjct: 121 -----------KGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVE 153
>gi|414885981|tpg|DAA61995.1| TPA: hypothetical protein ZEAMMB73_377552 [Zea mays]
Length = 166
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 67/84 (79%)
Query: 46 KSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFD 105
K AG LS + RA+ +EEEYR+ARA V RKG+++EGY IEG+S+GGHETC+ +P L AFD
Sbjct: 49 KGAGLLSVLDRAMADEEEYRRARAQVQRKGVEVEGYAIEGISVGGHETCITVPSLNVAFD 108
Query: 106 IGRCPTRAIQQNFVFITHGHLDHI 129
IGR P A+ Q+++FITH HLDHI
Sbjct: 109 IGRGPQFAVSQDYLFITHAHLDHI 132
>gi|413945463|gb|AFW78112.1| hypothetical protein ZEAMMB73_839838 [Zea mays]
Length = 285
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR-SLGNVELNLDLVALDVGETYEMRNDIV 194
RGL+ L+ PTIFVP + + VE+LFE+HR ++ ELN +LV L+V E YE+R D+
Sbjct: 28 CGQRGLFRLRSPTIFVPACLWDLVERLFEVHRRAMDQSELNHNLVPLEVREEYELRRDLK 87
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE 239
VR F+T+H IPSQGYVIY +++KLK+++I L G +I++LK SGVE
Sbjct: 88 VRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGSEIKRLKLSGVE 132
>gi|358331856|dbj|GAA50605.1| ribonuclease Z chloroplastic [Clonorchis sinensis]
Length = 261
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 35/234 (14%)
Query: 81 YTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
Y + SI G+ETCV + E++ AFDIG P I + VF++HGH DH+G + ++
Sbjct: 9 YEVFSWSIAGNETCVGVRSGEMRFAFDIGFAPNPMISCDHVFVSHGHADHVGAIAQHMKK 68
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV-----ELNLDLVALDVGETYEMRNDI 193
R L +L + ++PP + E V + + + ++ + E + LV L G ++ +
Sbjct: 69 RHLNHLPKASYYLPPWLIEHVRGICKAYAAMSELASEGTEFDCPLVPLSPGNRMQLPENW 128
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
+V +THH + SQGY+ + K + G E PE+A+ G
Sbjct: 129 IVEAIETHHSVKSQGYI-------------------LSKRDRDGQEY------PEIAYLG 163
Query: 254 DTTSEFMLNPRNA--DALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEIIEN 304
D+ + R + L ++LI EATFLD E +E A HGHTHL+E+ +N
Sbjct: 164 DSRFSVLTEARTSCPALLSVRLLIMEATFLDRPERMLERAVSHGHTHLTELKQN 217
>gi|29841375|gb|AAP06407.1| similar to GenBank Accession Number CAD22100 RNase Z in Arabidopsis
thaliana [Schistosoma japonicum]
Length = 268
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 35/274 (12%)
Query: 81 YTIEGVSIGGHETCVIIPELK--CAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ I G S+ G+ETCV + + FDIG P + +++FI+HGH DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG---NVELNLDLVALDVGETYEMRNDIVV 195
R L L+ T F+P + V+ + + ++ + + + ++ G +E+ + V
Sbjct: 69 RALNGLRGATYFMPKHLVPHVKAVCDSFTAMAEKHDSDFVGTFIPVEPGNRFELSDGWRV 128
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
F T+H I S GY++Y +G E+ PE+A+ GD+
Sbjct: 129 VSFSTYHSIISVGYLLYY-------------------RDPNGTEV------PEIAYLGDS 163
Query: 256 TSEFM--LNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEIIENAKWIRN-K 311
+ N D L ++LI EATFLD+ + IE A+ GHTHL EI +NA +++
Sbjct: 164 RFTVIHEANSICPDLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDEIRQNASLLKSVD 223
Query: 312 AVLLTHFSSRYHIEDIRQAVLK-LQSKVSAKVVP 344
+ L HFS RY DI + K + + ++VP
Sbjct: 224 YIYLIHFSDRYSYNDIIRLCYKDMPDWLVNRIVP 257
>gi|456970671|gb|EMG11422.1| hypothetical protein LEP1GSC151_5331 [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
Length = 146
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 77/137 (56%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT 200
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++ P +T
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSNHFFSPHQT 129
Query: 201 HHVIPSQGYVIYLLRKK 217
H +PSQGY +Y RK
Sbjct: 130 FHRVPSQGYTLYQKRKN 146
>gi|299469717|emb|CBN76571.1| metallo-beta-lactamase superfamily protein [Ectocarpus siliculosus]
Length = 604
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 115/221 (52%), Gaps = 8/221 (3%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLF 163
FD+G CP+ + VF++HGHLDH G + + R L P ++ + +EK+
Sbjct: 309 FDMGVCPSEVLHVAHVFVSHGHLDHCGAIVSHARLRALSQGPPAKYYMGAELASGMEKVR 368
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-KKLKKQY 222
+ + + +D+VA+ + ++ VRPF H + + G+ + L+ LK +Y
Sbjct: 369 KAFEEVEGASIAMDIVAVGPEDRVDLGQGCFVRPFLVKHRVDALGFALMRLKTDGLKHEY 428
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
L G++I L+K GV++ + EV +TGDT + +++ A++LI E T+LD
Sbjct: 429 RQLDGREIGALRKRGVDVQSSHETVEVVYTGDTVMDGLVS--QPLVWEARMLIMEVTYLD 486
Query: 283 DEMSIEHAQQHGHTHLSEIIENAKWIRN-KAVLLTHFSSRY 322
+ S A ++ H H ++++N +R + +++ H S R+
Sbjct: 487 GDGSA--AAKNFHVH--DVLDNMDRLRRVEQLVVAHVSERH 523
>gi|440791866|gb|ELR13104.1| hypothetical protein ACA1_098010 [Acanthamoeba castellanii str.
Neff]
Length = 331
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 24/272 (8%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G+T+ G S +T IPEL+ D G C R Q +VF+TH H DH +
Sbjct: 46 GHTLTGYSRSADKTFFHIPELQVGLDAGMC--RGRQPKYVFLTHTHTDHSVDVAYMSKKE 103
Query: 140 GLYNLKPPTIFVPPSIKEDVEKLFEIHRSL--------GNVELNLDLVALDVGETYEMRN 191
G+ T+F P + VE+ + L G+ + L + G+TY ++N
Sbjct: 104 GM------TLFCPEEVSGVVEEYIKASSQLNWGQPIPEGHGFMAGSLQPVKPGDTYLIKN 157
Query: 192 DIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVA 250
+ V + H + GY +K+L+ +Y+ G+++ +L+K GVEI + +P
Sbjct: 158 GLYQVTVLRCFHSVACVGYAFAERKKRLRPEYVGTPGRELGRLRKEGVEIEEETYAPLFV 217
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFL-----DDEMSIEHAQQHGHTHLSEIIENA 305
+ GDT+++ + + + ++ITE TF+ DD++ +E A++ GH H + + +
Sbjct: 218 YLGDTSTQ--VYEAHPEVFDYPVIITECTFIPDPQEDDQVIMERAERDGHIHWNSLQDIV 275
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
+ +L HFS RY I Q L ++
Sbjct: 276 LAHPDNTFVLIHFSLRYKERTIHQFFDDLATR 307
>gi|290984460|ref|XP_002674945.1| predicted protein [Naegleria gruberi]
gi|284088538|gb|EFC42201.1| predicted protein [Naegleria gruberi]
Length = 325
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 119/259 (45%), Gaps = 30/259 (11%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQN--FVFITHGHLDHIGGL----PMYVAS 138
G S T IP+L C D+G + + QN ITH H DH L P +V
Sbjct: 51 GHSKSAEATYFQIPQLSCNIDMGFIDKKYMSQNPNTFLITHTHADHTFYLAACQPAFVNR 110
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL----------NLDLVALDVGETYE 188
P ++VP E VE + L + +D++ ++ G+ E
Sbjct: 111 SN-----PNRVYVPKGKVEFVENFLHSCQELNAGKTLPRESVQERKPIDIIGVEPGDLIE 165
Query: 189 M---RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDII 244
+++ V + K H +P GY IY +KKLKK+Y LKG +I KL+K G EI+DII
Sbjct: 166 KIGGKDNYVAKVVKCDHSVPCNGYAIYERKKKLKKEYSELKGAEIAKLRKEKGDEISDII 225
Query: 245 LSPEVAFTGDTTSE-FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
L P +A GDTT F +NP L +++ E TFL++ E A H H + I
Sbjct: 226 LEPRIAIMGDTTYRVFEMNPF---LLEFPVIVVECTFLENGQE-ETALGAYHMHWNHIKP 281
Query: 304 NAKWIRNKAVLLTHFSSRY 322
+ +LTHFS RY
Sbjct: 282 YIEKHPQTRFILTHFSLRY 300
>gi|414590636|tpg|DAA41207.1| TPA: putative dnaJ chaperone family protein [Zea mays]
Length = 581
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 27/133 (20%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
I++EGY ++GVSIGG +P + R P H HI G
Sbjct: 35 IEIEGYPVDGVSIGG------VP-----LRLSRAPR----------PHRGPSHICG---- 69
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
RGL+ L PPTIFVP +++ VE+LFE+HR++ ELN +LV L+V E YE+R D+ V
Sbjct: 70 --QRGLFRLCPPTIFVPACLRDLVERLFEVHRAMDQSELNHNLVPLEVREEYELRRDLKV 127
Query: 196 RPFKTHHVIPSQG 208
R FKT+H IPSQ
Sbjct: 128 RAFKTYHAIPSQA 140
>gi|340959649|gb|EGS20830.1| hypothetical protein CTHT_0026680 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 359
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 131/318 (41%), Gaps = 58/318 (18%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G C ++ +F+THGH DH P +V
Sbjct: 29 TLTGRSRAAWHTSFVIPQLNLLLDAGLC-VNNLRPKHIFLTHGHSDHTLLTPAFVKRE-- 85
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIH--------RSLGNVELNLDLVALDV---------- 183
PP IF P +K+ ++ + +LG++E +L L+
Sbjct: 86 ---DPPDIFCPAEMKQVLDNFINANTVLNLGGLWTLGDLETDLSSSDLESTNSSDSSGSG 142
Query: 184 -----------------------------GETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
G + F H +P GYV + +
Sbjct: 143 NGPGDGLLRTHITHPLVPSQTVTLRRLVGGSGNSAKPSWTATAFACDHTVPCLGYVFHQI 202
Query: 215 RKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTGDTTSEFM-LNPRNADALRA- 271
KLK +Y L ++ L++S G +IT + +P AF GDTT+ + NP L
Sbjct: 203 TYKLKPEYRSLSPAELRTLRQSIGSDITQPVATPVFAFLGDTTALTLDQNPEVQKWLEEG 262
Query: 272 -KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
K++ITE +FL +E + A++ HT +++ + N +L HFS RY E+IR
Sbjct: 263 LKVVITECSFLREEHRAQ-AEKTKHTLWADLEPIIRRWPNTTFILMHFSLRYTDEEIRTF 321
Query: 331 VLKLQSKVSAKVVPLTEG 348
+L KV + VV +G
Sbjct: 322 FKELGDKVPSNVVVWIDG 339
>gi|302883789|ref|XP_003040793.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
gi|256721684|gb|EEU35080.1| hypothetical protein NECHADRAFT_94874 [Nectria haematococca mpVI
77-13-4]
Length = 322
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 127/283 (44%), Gaps = 46/283 (16%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G C +A + +F+THGH DH P +V
Sbjct: 30 YVLTGKSRAAWHTSFVIPQLNLLLDAGLCVNKA-RPKHIFLTHGHSDHTLLSPAFVKRE- 87
Query: 141 LYNLKPPTIFVPPSI---------------------KEDVEKLFEIHRSLGNV-----EL 174
PP I+ P + ED ++L + N L
Sbjct: 88 ----DPPDIYCPVEMVKVLDDFLLARTMLNLGGLITAEDADQLADTSDEGSNDPDRNGWL 143
Query: 175 NLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
N + + G+T +R +++ F H +P GYV ++ LK ++ KG +++
Sbjct: 144 NTHITHGVQHGDTVNLRRTKNVIATAFDCDHTVPCVGYVFSMVTHGLKPEFTSRKGPELK 203
Query: 232 KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAK----ILITEATFLDDEMSI 287
L++SGVEIT +P AF GDTT+ + AD + + ++ITE +FL +E
Sbjct: 204 ALRESGVEITAPRSTPIFAFLGDTTAATLA----ADPVWLQEGIPVVITECSFLYEEHKP 259
Query: 288 EHAQQHGHTHLSEIIEN-AKWIRNKAVLLTHFSSRYHIEDIRQ 329
+ A + HT S++ KW R VL+ HFS RY E IRQ
Sbjct: 260 Q-AVRTKHTIWSDLEPVIRKWPRTTFVLM-HFSMRYTEEAIRQ 300
>gi|380483616|emb|CCF40512.1| hypothetical protein CH063_00356 [Colletotrichum higginsianum]
Length = 324
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 47/284 (16%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + +F+THGH DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLV-VNNHRPKHIFLTHGHADHCLLIPAFTKRE- 85
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLVALDV-GETY 187
PP +F P +K+ ++ F + ++L N V L LD +D G T
Sbjct: 86 ----DPPDVFCPVEMKKALDD-FILAKTLLNRGGLYTSNDAESVGLELDGKGVDEEGRTE 140
Query: 188 EMR-------------NDIV-VRPFK--------THHVIPSQGYVIYLLRKKLKKQYIHL 225
R D+V +R K H +PS GYV KL+ +Y L
Sbjct: 141 GERAFLGTHKTTAVKHGDVVPLRRLKGMNATVVQCDHNVPSVGYVFTTTTHKLRPEYTSL 200
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATFLDD 283
G +++ L++SGVE+T + +P AF GDTT+ + + + LR I +ITE +FL D
Sbjct: 201 PGPELKSLRQSGVELTAPVTTPVFAFLGDTTASTLA--ADPEWLRQGIPVVITECSFLHD 258
Query: 284 EMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E + A++ HT ++ + + +LTHFS RY +D+
Sbjct: 259 EHDAQ-AEKTKHTKWKDLEKVVRRWPKTTFILTHFSMRYSNKDV 301
>gi|310799652|gb|EFQ34545.1| hypothetical protein GLRG_09689 [Glomerella graminicola M1.001]
Length = 324
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 127/284 (44%), Gaps = 47/284 (16%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ +FITHGH DH +P +
Sbjct: 28 YVLTGKSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFITHGHADHCLLIPAFTKRE- 85
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLVALD-VGETY 187
PP +F P +K+ +E F + ++L N + L LD +D G T
Sbjct: 86 ----DPPDVFCPVEMKKALED-FILAKTLLNRGGLYTSDDAESLGLPLDGKGVDDEGRTE 140
Query: 188 EMR-------------NDIV-VRPFK--------THHVIPSQGYVIYLLRKKLKKQYIHL 225
R D+V +R K H +PS GYV KL+ +Y L
Sbjct: 141 GERAFLGTHKTTAVRHGDVVPLRRLKGMDAMVIQCDHNVPSVGYVFTTTTHKLRPEYTAL 200
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATFLDD 283
G +++ L+ SGVE+T + +P AF GDTT+ + + LR I +ITE +FL D
Sbjct: 201 PGAELKSLRLSGVELTAPVTTPVFAFLGDTTASTLAA--EPEWLRQGIPVVITECSFLYD 258
Query: 284 EMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E + A++ HT ++ + + +LTHFS RY +D+
Sbjct: 259 EHDAQ-AEKTKHTKWKDLEKVVRKWPKTTFILTHFSMRYSNKDV 301
>gi|440798085|gb|ELR19154.1| nuclear RNase Z, putative [Acanthamoeba castellanii str. Neff]
Length = 323
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 5/249 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+ + G S G T + +++ D G PT I+ + VFI+H H DH LP+ V R
Sbjct: 18 WHVSGYSRAGEATGFYVKQMRWFLDAG-VPTSQIKPDIVFISHSHTDHSMMLPLLVDRRK 76
Query: 141 LYNLKPPTIFVP--PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
+ P VP + KL + + + + G+T ++ N
Sbjct: 77 PLRVYAPAEAVPFLAGYVAGMNKLNQQSDDYEDRSAGYTYIPVTTGQTVQIDNKFWAHVI 136
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE 258
H + S GY + RK+LK ++ G+++ +L+K GVE+ + P +AF GDTT +
Sbjct: 137 DCEHPVTSVGYCFFEKRKRLKDEFKGKSGRELGQLRKDGVELNEEAELPYMAFLGDTTGK 196
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
+++ + + I F D Q H H S++ A R+ +L HF
Sbjct: 197 VLVDHGKLLSTYPVVFIECTFFQPDHKDAAAGSQ--HLHWSDLRPFALEHRDTTFILIHF 254
Query: 319 SSRYHIEDI 327
S RY ++I
Sbjct: 255 SKRYSDDEI 263
>gi|397578361|gb|EJK50870.1| hypothetical protein THAOC_30020 [Thalassiosira oceanica]
Length = 389
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 56/278 (20%)
Query: 101 KCAFDIGRCP--TRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKE 157
+ AFDIG + AI +VF++HGH+DH+GGL + + + + + PT FVP +
Sbjct: 45 RVAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSFGGQAPTYFVPAQLLP 104
Query: 158 DVEKLFEIHRSL----------------GNVELNLDLVALDVGE-------TYEMRNDIV 194
+EK + SL G + ++LV+++ G+ Y +
Sbjct: 105 QIEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFY 164
Query: 195 VRPFKTHHVI-PSQGYVI-YLLRKKLKKQYIHLKGKQIEKLKKSGVEIT-DIILSPEVAF 251
R + H P+ GYV+ LK +Y L G +I +L KSGV I D + E +
Sbjct: 165 ARAVQVDHAGHPTLGYVLGSRTAGGLKPEYRQLNGARIRELVKSGVSIKGDPVERVEFGY 224
Query: 252 TGDTTSEFMLNPRNA--------DAL-------RAKILITEATFLD---DEMSIEHAQQH 293
TGDT + ++ + A D L A++L E TFLD DE++ + A +
Sbjct: 225 TGDTCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADER 284
Query: 294 GH---THLSEIIENAKWIRNKA------VLLTHFSSRY 322
GH HL I + + ++A ++ H S++Y
Sbjct: 285 GHLHVNHLESIFGSHDLLASRAESVSGSIVFYHLSAKY 322
>gi|429854058|gb|ELA29091.1| RNase z [Colletotrichum gloeosporioides Nara gc5]
Length = 327
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 122/285 (42%), Gaps = 49/285 (17%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
YT+ G S T +IP+L D G ++ + +TH H DH P +
Sbjct: 31 YTLIGKSRAAWHTSFVIPQLNLLLDAGLV-VNDLRPKHIVLTHTHSDHCLLAPAFTKRE- 88
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFE---IHRSLGN------------VELNLDLVALDV-- 183
PP I +P + KLF+ + ++L N + L +D +D
Sbjct: 89 ----DPPDIILP----AECRKLFDDYVLAKTLLNRGGTYTGADAESLGLKVDGQGIDADG 140
Query: 184 -------------------GETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
G+T +R ++ V FK H +PS GY+ KLK +Y
Sbjct: 141 RTEGDRAFLGTHNTIPVKPGDTLPLRKVKNMTVSVFKCDHNVPSVGYLFSTTNHKLKPEY 200
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
L G +I+KL+++GVEIT + +P AF GD T+ + ++ITE +FL
Sbjct: 201 TSLPGPEIKKLRQAGVEITAPVTTPVFAFLGDGTATTLAAEPEWLRQEVAVVITECSFLY 260
Query: 283 DEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
D+ + A++ HT ++ + + +L HFS RY +DI
Sbjct: 261 DKHDAQ-AEKTKHTKWKDLEKVVRKWPKTTFILIHFSMRYSNKDI 304
>gi|171686140|ref|XP_001908011.1| hypothetical protein [Podospora anserina S mat+]
gi|170943031|emb|CAP68684.1| unnamed protein product [Podospora anserina S mat+]
Length = 340
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 116/285 (40%), Gaps = 26/285 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IPEL D G A + VF+THGH DH P ++ +
Sbjct: 47 TLTGRSRAAWHTSFVIPELNLLLDAGLV-VGAHRPKHVFLTHGHSDHCLLTPAFLRADPP 105
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHR-------------------SLGNVELNLDLVALD 182
+ PP ++ P + +E+ + + LG + +
Sbjct: 106 HT--PPLLYCPEEMARPLEQFLQGSQLLNKGFTGFGEGEGECRLGRLGRYTITTMKPGEE 163
Query: 183 VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITD 242
G Y + H + S GYV KLK +Y LKG++I++L+ GVEIT
Sbjct: 164 TGLRYVKGQRWKATAVRCDHTVASIGYVFSTTTSKLKPEYQGLKGEEIKRLRTEGVEITG 223
Query: 243 IILSPEVAFTGDTTSEFMLNPRNADAL---RAKILITEATFLDDEMS-IEHAQQHGHTHL 298
+ P AF GDTT+ D +++ITE +FL + E A + HT
Sbjct: 224 EVEQPVFAFMGDTTAAVYEEGGEMDGFLKRGVRVVITECSFLRESREHREQADKTKHTMW 283
Query: 299 SEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
S++ + ++ HFS RY D+ +++ + VV
Sbjct: 284 SDLERVVRRWPGVVWVVMHFSLRYEEGDVVSFFGEMEERPGNLVV 328
>gi|455790689|gb|EMF42541.1| beta-lactamase domain protein [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456986363|gb|EMG21950.1| beta-lactamase domain protein [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 136
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
Query: 211 IYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALR 270
+Y RKKLKK++ + ++ + K +E++++ P ++F+GDT E++L + D
Sbjct: 1 MYQKRKKLKKEFQSISQNELNQALKEKIEVSELSEIPVISFSGDTKIEYVL--EHEDVAN 58
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+ IL E T++D+E ++ A++ GHTHL EI+ N +N+ ++L HFS RY + IR+
Sbjct: 59 SSILFIECTYIDNERNVAQAREWGHTHLDEILNNLSSFKNEKIVLIHFSKRYSVSYIREV 118
Query: 331 VLK 333
+ K
Sbjct: 119 LDK 121
>gi|326427790|gb|EGD73360.1| hypothetical protein PTSG_05071 [Salpingoeca sp. ATCC 50818]
Length = 486
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 127/283 (44%), Gaps = 29/283 (10%)
Query: 78 LEGYTIEGVSIGGHETCVII------PELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGG 131
L+G I S GH TC+ + P L FDIG C T ++Q VF++H H DH+G
Sbjct: 5 LDGLEITSHSSAGHGTCITVTTSNPLPRLSICFDIGACLTESVQAQHVFVSHCHTDHVGS 64
Query: 132 LPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLV---------ALD 182
L ++ +R + + P T +VP + + ++ ++ +L+ D V +
Sbjct: 65 LMLHARAREMCS-GPATYYVPEPVIPHLRRMQQLF-----ADLDSDGVPKVPPARFEPIW 118
Query: 183 VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK---LKKQYIHLKGKQIEKLKKSGVE 239
G + V+ H + + L R+ L ++ L +I+ L V
Sbjct: 119 PGRVVPVGKGFAVKVLAVEHRV-HNAFAFVLQRRDRLPLPPEFRGLPPMEIKALYDENVV 177
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
+ ++GD +L ++A L ++LI E T+LDD + A+++ H HL
Sbjct: 178 QKFGPPKALLTYSGDCVLRSLL--KHAFVLSTRVLICELTYLDDRTESK-AEKYMHVHLK 234
Query: 300 EIIENAKWIRNKAVL-LTHFSSRYHIEDIRQAVLKLQSKVSAK 341
E++ RN + L L HFS+RY E I ++ L +++ +
Sbjct: 235 ELVPALHRFRNLSHLHLVHFSTRYCAESICGHLMALPTRMQDR 277
>gi|336469976|gb|EGO58138.1| hypothetical protein NEUTE1DRAFT_24301 [Neurospora tetrasperma FGSC
2508]
gi|350290338|gb|EGZ71552.1| hypothetical protein NEUTE2DRAFT_41347, partial [Neurospora
tetrasperma FGSC 2509]
Length = 320
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 124/281 (44%), Gaps = 39/281 (13%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ + +FITHGH DH P+++
Sbjct: 25 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVINKS-RPKHIFITHGHNDHALSSPVFIKRE- 82
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHR--SLGNV-------ELNLDL------------- 178
PP P +K+ +E + +LG + EL L++
Sbjct: 83 ----DPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEVRDPETGEVVRSEI 138
Query: 179 ------VALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ G+ +R +I F H +P GY+ KLK ++ L K++
Sbjct: 139 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 198
Query: 231 EKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAK--ILITEATFLDDEMSIE 288
+ ++ SG E+T + SP AF GDTT++ + L K ++ITE +FL +E +
Sbjct: 199 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLNEKLPVVITECSFLYEEHRAQ 258
Query: 289 HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
A++ HT +++ + + ++ HFS RY + +R+
Sbjct: 259 -AEKTKHTIWADLEKVIRKYPETMFVVMHFSLRYSVGQVRR 298
>gi|322707813|gb|EFY99391.1| RNase Z (ISS) [Metarhizium anisopliae ARSEF 23]
Length = 327
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 124/304 (40%), Gaps = 57/304 (18%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP+L D G C + + +F+THGH DH +A +
Sbjct: 32 LTGRSRAAWHTSFVIPQLNLLLDAGLCVNKQ-RPKHIFLTHGHADHT-----LLAFAFVK 85
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD-LVALDV------------------ 183
PP ++ P +K +F+ H LG +NL LV +
Sbjct: 86 REDPPDVYCPAEMKH----IFDTH-ILGTTMMNLGGLVEVGDAEKQGYKVDDTNGETDAD 140
Query: 184 --------------------GETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQ 221
G+T +R I F H +P GYV +LK++
Sbjct: 141 GRTPQERAFLNTHVTHGVMHGDTVPLRRLKGITATAFNCDHTVPCVGYVFSSTTNRLKQE 200
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEAT 279
Y L G Q+ L++SGVEIT+ P AF GDTT + + P D + ++ITE +
Sbjct: 201 YKSLAGPQLRDLRRSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGI--PVVITECS 258
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVS 339
FL ++ + + A + HT S++ + +L HFS RY + Q L+ +
Sbjct: 259 FLYEDHAAQ-ADKTKHTKWSDLEPVIRSWPGTTFILIHFSMRYSDRQVCQFFTDLEDAPT 317
Query: 340 AKVV 343
V+
Sbjct: 318 NMVI 321
>gi|322700389|gb|EFY92144.1| 3'-tRNA processing endoribonuclease [Metarhizium acridum CQMa 102]
Length = 340
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 47/299 (15%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP+L D G C + + +F+THGH DH +A +
Sbjct: 45 LTGRSRAAWHTSFVIPQLNVLLDAGLCVNKQ-RPKHIFLTHGHADHT-----LLAYAFVK 98
Query: 143 NLKPPTIFVPPSIKE---------------------DVEKL-FEIHRSLGNVE------- 173
PP I+ P +K D EK +++ + G +
Sbjct: 99 REDPPDIYCPAEMKHIFDNHILSTTMMNLGGLVEVGDAEKQGYKVDNTNGGTDADGRTPQ 158
Query: 174 ----LNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
LN + + G+T +R I F H +P GYV +L ++Y L
Sbjct: 159 ERAFLNTHVTHGVKHGDTVPLRRLKGITATAFSCDHTVPCVGYVFSSTTNRLMQEYKSLA 218
Query: 227 GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLDDE 284
G Q++ L++SGVEIT+ P AF GDTT + + P D + ++ITE +FL ++
Sbjct: 219 GPQLKDLRQSGVEITEPHSVPMFAFLGDTTIATLASEPPWLRDGI--PVVITECSFLHED 276
Query: 285 MSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
+ + A + HT S++ + +L HFS RY + + + L+ + V+
Sbjct: 277 HAAQ-ADKTKHTKWSDLEPVIRRWPGTTFILIHFSMRYSDRQVCRFFMDLEDAPTNMVI 334
>gi|124003210|ref|ZP_01688060.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123991308|gb|EAY30739.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 304
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 134/278 (48%), Gaps = 37/278 (13%)
Query: 77 DLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQN-----FVFITHGHLDHIGG 131
+L TI G S T + EL FD G T + Q V I+H DH+ G
Sbjct: 12 NLMNLTITGYSTALFATWYFVEELGLLFDAGEGITANLLQKSRKIKHVLISHADRDHLTG 71
Query: 132 LPMYV---ASRGLYNLKPPTIFVPPSIKEDVEKLF-EIHRSLGNVELNLDLVALDVGETY 187
L + A GL+ P P++ + +K I ++ + + +A+
Sbjct: 72 LLQFNQLNARSGLHIHYPADCGSFPALADFCQKFDPHIQGAIWHPTTSQSRIAI------ 125
Query: 188 EMRNDIVVRPFKTHHVIPSQG------YVIYLLRKKLKKQYIHLKGKQIEKLK-KSGVE- 239
++D VV P + HV ++G Y + +++KLK + +L G +I+K+K + G+E
Sbjct: 126 --KDDFVVEPVQNGHVKAAEGVTKSLSYKVMQIKRKLKPELANLSGLEIKKIKDEKGIEA 183
Query: 240 ITDIILSPEVAFTGDTTSEFMLNPRNADALR---AKILITEATFLDDEMSIEHAQQHGHT 296
T+ I + ++++GDT E D R +KILI EATF+D +++ +H H+
Sbjct: 184 TTNEIRTNVISYSGDTPVE--------DYERFNHSKILIHEATFID-QVANNKENRHPHS 234
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+L E+IE I + ++L HFSSRY E I A+ +L
Sbjct: 235 YLEEVIEMVASIDVEQLILGHFSSRYSSEHIDTAIREL 272
>gi|367050100|ref|XP_003655429.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
gi|347002693|gb|AEO69093.1| hypothetical protein THITE_15187, partial [Thielavia terrestris
NRRL 8126]
Length = 322
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 37/278 (13%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G ++ +F+THGH DH P +V
Sbjct: 26 TLTGRSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFLTHGHSDHTLLTPAFVKRS-- 82
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNV---ELNLDLV---------------- 179
PP IF P +K+ ++ L G + E N
Sbjct: 83 ---DPPDIFCPAEMKDALDGFINAKTMLSEGGGIWPPESNATATKPPPPLHPLLRTHTTH 139
Query: 180 ALDVGETYEMRN-----DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
L G T +R+ F H +P GY+ + KL+ QY L G ++ +L+
Sbjct: 140 GLHPGTTVTLRHLSPPPTYTATAFACDHTVPCLGYLFSAVTPKLQPQYRGLPGAELRRLR 199
Query: 235 -KSGVEITDIILSPEVAFTGDTTSEFMLN-PRNADALRA-KILITEATFLDDEMSIEHAQ 291
+ GV IT +P +AF GD T+ + + P R +++TE +FL +E + A+
Sbjct: 200 EEEGVAITAPAAAPVLAFLGDGTAATLRDRPETVGLDRGVAVVVTECSFLWEEHRAQ-AE 258
Query: 292 QHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+ HT S++ + +L HFS RY E+IR+
Sbjct: 259 RTRHTLWSDLEPVVRRWPRTVFVLVHFSLRYSDEEIRR 296
>gi|167521696|ref|XP_001745186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776144|gb|EDQ89764.1| predicted protein [Monosiga brevicollis MX1]
Length = 945
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 117/253 (46%), Gaps = 33/253 (13%)
Query: 80 GYTIEGVSIGGHETCVII--PELKCA--FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
GY + S+ G T V + PE K + FD+G P A VFI+H H DH+G L +
Sbjct: 100 GYELRVFSVAGVATTVRVTQPERKFSLLFDLGILPLWATNIQHVFISHCHTDHVGSLISH 159
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN-----LDLVALDVGETYEMR 190
+ L K PT +VP E ++ L E +L + L +V + G+ M
Sbjct: 160 CRASSLGG-KAPTYYVPAHATELLQDLKEGFDTLDGKSGDDSPPPLKIVPVQPGQAI-MV 217
Query: 191 NDIVVRPFKTHHVIPSQGYVIYL-LRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEV 249
+ PF THH +PS GY++Y + + +Y HL + I +L++ G + P++
Sbjct: 218 KGFKILPFATHHRVPSLGYLVYRQVPPTVPMEYRHLAPRAIAELRQQGA-FGEPQWIPDL 276
Query: 250 AFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
+ GD + P D RA++L+ EAT+L E L +E A+
Sbjct: 277 CYMGDCIIDSLAVEP---DIARARLLLCEATYLSPE-------------LCSYLETAQ-- 318
Query: 309 RNKAVLLTHFSSR 321
++ V+L HFS R
Sbjct: 319 -HERVVLMHFSRR 330
>gi|85081287|ref|XP_956690.1| hypothetical protein NCU00426 [Neurospora crassa OR74A]
gi|28917764|gb|EAA27454.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|40882153|emb|CAF05980.1| conserved hypothetical protein [Neurospora crassa]
Length = 359
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 44/284 (15%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G ++ + +FITHGH DH P+++
Sbjct: 49 YILTGKSRAAWHTSFVIPQLNLLLDAGLVINKS-RPKHIFITHGHNDHALSSPVFIKRE- 106
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHR--SLGNV-------ELNLDL------------- 178
PP P +K+ +E + +LG + EL L++
Sbjct: 107 ----DPPDFHCPVGMKQVLEDYLRANTMLNLGGLIAPRPGKELPLEIRDPETGEVVRSEI 162
Query: 179 ------VALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ G+ +R +I F H +P GY+ KLK ++ L K++
Sbjct: 163 RPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFAKLPPKEL 222
Query: 231 EKLKKSGVEITDIILSPEVAFTGDTTS-----EFMLNPRNADALRAKILITEATFLDDEM 285
+ ++ SG E+T + SP AF GDTT+ E M D L ++ITE +FL +E
Sbjct: 223 KAIRASGQELTAPVTSPIFAFLGDTTTKTLEEEPMRGWLTNDKL--PVVITECSFLYEEH 280
Query: 286 SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+ A++ HT +++ + + ++ HFS RY + +R+
Sbjct: 281 RAQ-AEKTKHTIWADLEKVIRKYPETTFVVMHFSLRYSVGQVRR 323
>gi|413950468|gb|AFW83117.1| hypothetical protein ZEAMMB73_323162 [Zea mays]
Length = 176
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 169 LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
+ ELN +LV L+V E YE+R D+ VR F+T+H IPSQGYVIY +++KLK+++I L G
Sbjct: 1 MDQSELNHNLVPLEVREEYELRRDLKVRAFRTYHAIPSQGYVIYSVKQKLKQEFIGLPGS 60
Query: 229 QIEKLKKSGVE 239
+I++LK SGVE
Sbjct: 61 EIKRLKLSGVE 71
>gi|284038686|ref|YP_003388616.1| hypothetical protein Slin_3827 [Spirosoma linguale DSM 74]
gi|283817979|gb|ADB39817.1| conserved hypothetical protein [Spirosoma linguale DSM 74]
Length = 292
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 41/277 (14%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR--CPT---RAIQQNFVFITHGHLDHIGGL---P 133
TI G S T + EL+ D G PT ++ + + +F++H DH+ GL
Sbjct: 4 TITGYSTALFSTWYFVEELRLLLDAGDGIAPTLLQKSRKIDHIFLSHADRDHVTGLLRLN 63
Query: 134 MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE------IHRSLGNVELNLDLVALDVGETY 187
A G + PT S E K F+ + LG+ +
Sbjct: 64 ELNARDGFPAVYYPTDAGSISALETFSKQFDERVKKTVWHPLGD------------QQQV 111
Query: 188 EMRNDIVVRPFKTHHVIPSQ-------GYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVE 239
++R D+ V+ + +HV+ +Q GY IY + KLK ++ L G+ + +L ++ G E
Sbjct: 112 QLRKDLFVQSARNNHVVKAQLHEVKSLGYQIYQTKNKLKSDFVDLSGEALRQLAETLGRE 171
Query: 240 -ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTH 297
+TD + + +A++GDT +E N +ILI EATFL E++ ++ H+
Sbjct: 172 SLTDEVRTNLLAYSGDTPAENFDQWNNT-----QILIHEATFLTRAELATLETNRNQHST 226
Query: 298 LSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
L E++ + + ++L HFSSRY E+I +A+ +
Sbjct: 227 LEEVLAAVADLNIQTLILGHFSSRYSEEEIDEAIRRF 263
>gi|170287870|ref|YP_001738108.1| ribonuclease Z [Thermotoga sp. RQ2]
gi|170175373|gb|ACB08425.1| ribonuclease Z [Thermotoga sp. RQ2]
Length = 280
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +RN
Sbjct: 62 NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ +GD+ + L+P ++LI E TFLD + H + E++E+
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD----ARDRRYKNHAAIDEVMESV 232
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
K K V+L H S+RY I ++ + K + ++
Sbjct: 233 KAAGVKKVILYHISTRY-IRQLKSVIKKYKEEM 264
>gi|338730980|ref|YP_004660372.1| RNAse Z [Thermotoga thermarum DSM 5069]
gi|335365331|gb|AEH51276.1| RNAse Z [Thermotoga thermarum DSM 5069]
Length = 279
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 25/248 (10%)
Query: 91 HETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD G R +VF+THGH+DHI GL V +R
Sbjct: 11 YSTWVYYAPERILFDAGEGVSLTMSNRIYAVKYVFLTHGHIDHIAGLWSIVNTRNNSMGD 70
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN----DIVVRPF 198
KP +F P K E L I ++ ++ L + GE +R V PF
Sbjct: 71 REKPLYVFYPKGNKAIEEWLQFIRKTSDDLRFELIDQPVSAGERIFLRQAGGFSRYVVPF 130
Query: 199 KTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS--GVEITDIILSPEVAFTGD 254
K H P GY + RKKLK +Y +L +I KL ++ IT+I + +GD
Sbjct: 131 KVRHTGSDPCFGYSVIETRKKLKDEYKNLPESEIAKLARTLGSDAITEIYEKKLLTISGD 190
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T + ++P+ DA ++IL+ + TFL + + + H + E+IE AK + ++
Sbjct: 191 T---YGIDPQ--DAKDSEILVHDCTFL----KVSDRKMNAHASIEEVIEIAKQANVEKLI 241
Query: 315 LTHFSSRY 322
L H S+RY
Sbjct: 242 LYHISTRY 249
>gi|15643627|ref|NP_228673.1| hypothetical protein TM0864 [Thermotoga maritima MSB8]
gi|403252604|ref|ZP_10918913.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
gi|418044966|ref|ZP_12683062.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|61680268|pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|61680269|pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
gi|158428284|pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
gi|158428285|pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
gi|4981399|gb|AAD35946.1|AE001753_2 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678048|gb|EHA61195.1| ribonuclease Z [Thermotoga maritima MSB8]
gi|402812094|gb|EJX26574.1| hypothetical protein EMP_02484 [Thermotoga sp. EMP]
Length = 280
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +RN
Sbjct: 62 NIRNNGMGDREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ +GD+ + L+P ++LI E TFLD + H + E++E+
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD----ARDRRYKNHAAIDEVMESV 232
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
K K V+L H S+RY I ++ + K + ++
Sbjct: 233 KAAGVKKVILYHISTRY-IRQLKSVIKKYREEM 264
>gi|455790700|gb|EMF42552.1| hypothetical protein LEP1GSC067_4934 [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456986358|gb|EMG21945.1| hypothetical protein LEP1GSC150_4036 [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 146
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y EG+S GG T + +P L FDIG I + + +TH HLDH GLP Y++ R
Sbjct: 10 YQFEGISEGGIRTSLYLPSLSLMFDIGAQNPNRIHLDNLLLTHSHLDHSCGLPYYISQRS 69
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
L LK P IFVP +KE ++K+ +++ + N +L A+ G+ ++ ++
Sbjct: 70 LRKLKSPKIFVPAPLKEPMQKILDLYSEIENFTYAYELNAVSPGDKIDLDSN 121
>gi|340516722|gb|EGR46969.1| predicted protein [Trichoderma reesei QM6a]
Length = 337
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 115/288 (39%), Gaps = 53/288 (18%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T ++P L D G + +F+THGH DH P +V
Sbjct: 38 LTGRSRAAWHTSFVVPSLNLLLDAGLI-VNNQRPKHIFLTHGHSDHTLLAPAFVKRD--- 93
Query: 143 NLKPPTIFVPPSIKE------------------------------DVEKLFEIHRSLGNV 172
PP +F P +++ D E + R LG
Sbjct: 94 --DPPDVFCPAQMRDALDDFVLAKTLLNLGGEIRADDAEARGLAVDDEAVLARSRQLGRT 151
Query: 173 ELNLDLVA------LDVGETYEMR----NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
++ L G+T +R I F H +P GYV + ++L+ ++
Sbjct: 152 PSATAFLSTHITHGLRAGDTVPLRRAQAQGIAATAFACDHTVPCLGYVFHKTTQRLRPEF 211
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI--LITEATF 280
L G +++ L+++G +T +P AF GDTT+ + + LR +I ++TE +F
Sbjct: 212 ASLPGPELQALRRAGTALTAPFTAPVFAFLGDTTARTLAA--EPEWLRREIPVVVTECSF 269
Query: 281 LDDEMSIEHAQQHGHTHLSEIIEN-AKWIRNKAVLLTHFSSRYHIEDI 327
L E + A+ HT E+ KW R V LTHFS RY +I
Sbjct: 270 LYAEHEPQAAKTK-HTFWRELEPVIRKWPRTTFV-LTHFSMRYDDAEI 315
>gi|336268156|ref|XP_003348843.1| hypothetical protein SMAC_01866 [Sordaria macrospora k-hell]
gi|380094101|emb|CCC08318.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 359
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 54/289 (18%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +FITHGH DH P+Y+
Sbjct: 48 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNNS-RPKHIFITHGHNDHALLSPVYIKRE- 105
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD-LVA------------------- 180
PP P +K+ ++ N LNL L+A
Sbjct: 106 ----DPPDFHCPVGMKQVLQDYLR-----ANTMLNLGGLIAPRPGKEIPLVEKDPETGEV 156
Query: 181 -------------LDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
L+ G+ +R +I F H +P GY+ KLK ++ L
Sbjct: 157 VKEVIRPTHVTYGLEAGDVVPLRRTKNISAVAFACDHTVPCLGYLFQQTTHKLKPEFASL 216
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTS-----EFMLNPRNADALRAKILITEATF 280
K+++ ++ SG E+T + +P AF GDTT+ E M D L ++ITE +F
Sbjct: 217 PPKELKAIRASGQELTAPVTTPMFAFLGDTTTKTLEEEPMRGWLENDKL--PVVITECSF 274
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L +E + A++ HT +++ + + ++ HFS RY + ++R+
Sbjct: 275 LYEEHRAQ-AEKTKHTLWADLEKVVRRYPATTFVVMHFSLRYSVGEVRR 322
>gi|302405763|ref|XP_003000718.1| RNase Z [Verticillium albo-atrum VaMs.102]
gi|261360675|gb|EEY23103.1| RNase Z [Verticillium albo-atrum VaMs.102]
Length = 329
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 47/285 (16%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +F+THGH DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKE-RPKHIFLTHGHSDHVLLSPAFVKRE- 89
Query: 141 LYNLKPPTIFVPPSIKEDVEKLF---EIHRSLGNVELN-LDLVALDV----------GET 186
PP I+ P +K+ + + G+++ + + L V G T
Sbjct: 90 ----DPPDIYCPVEMKKFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 187 YEMR--------------NDIVVRP--------FKTHHVIPSQGYVIYLLRKKLKKQYIH 224
R ++I +R F+ H +P GYV +LK +Y
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSASVFRCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLD 282
L G++I+ L+ SGV+IT SP AF GDTT+ + P D + ++ITE +FL
Sbjct: 206 LAGQEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGI--PVVITECSFLY 263
Query: 283 DEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+E + A++ HT+ ++ + ++ HFS RY E +
Sbjct: 264 EEHKAQ-AEKTKHTYWPDLEAVVRRWPKTTFIIMHFSMRYSDEQV 307
>gi|148269208|ref|YP_001243668.1| ribonuclease Z [Thermotoga petrophila RKU-1]
gi|281411506|ref|YP_003345585.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
gi|147734752|gb|ABQ46092.1| RNAse Z [Thermotoga petrophila RKU-1]
gi|281372609|gb|ADA66171.1| ribonuclease Z [Thermotoga naphthophila RKU-10]
Length = 280
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTILGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + + P P VE+ E I R+ ++ + ++ L GE +R+
Sbjct: 62 NIRNNGMGDREKPLDVFYPRGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGEKVFLRDAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLKK++ L K+I +L K+ G + +T+
Sbjct: 122 GFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ +GD+ + L+P ++LI E TFLD + H + E++E+
Sbjct: 182 KKVLTISGDSLA---LDPEEIRG--TELLIHECTFLD----ARDRRYKNHAAIDEVMESV 232
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
K K V+L H S+RY I ++ + K + ++
Sbjct: 233 KAAGVKKVILYHISTRY-IRQLKSVIKKYKEEM 264
>gi|357494723|ref|XP_003617650.1| Nuclear ribonuclease Z [Medicago truncatula]
gi|355518985|gb|AET00609.1| Nuclear ribonuclease Z [Medicago truncatula]
Length = 102
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 74 KGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLP 133
KG+++EGY +E +SIGGHE CVI + AFDIGRCP R + +F+ I+H H+ HI
Sbjct: 23 KGLNIEGYQVESLSIGGHEICVIFSNFRIAFDIGRCPPRFVSMDFLLISHAHMFHIVSFS 82
Query: 134 MYVASRGL 141
+Y S +
Sbjct: 83 LYFHSHNV 90
>gi|256419268|ref|YP_003119921.1| hypothetical protein Cpin_0220 [Chitinophaga pinensis DSM 2588]
gi|256034176|gb|ACU57720.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
Length = 292
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 133/283 (46%), Gaps = 38/283 (13%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-----NFVFITHGHLDHIGGLPMY- 135
TI S + I EL D G A+ Q FI+H DH+ GL +
Sbjct: 4 TITAYSTALFSSWYFIEELGILLDAGDGMISALLQKSRKITHAFISHADRDHLTGLLQFN 63
Query: 136 -VASRGLYNLKPPTIFVP------PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYE 188
+ +R Y P I P P++ E + F+ H + G V + G+
Sbjct: 64 QLNAREGY----PVICYPRDSRSFPAMHEFFAR-FDPH-TTGTV-----WQPVTAGDEIR 112
Query: 189 MRNDIVVRPFKTHHV-IP-----SQGYVIYLLRKKLKKQYIHLKGKQIEKLK-KSGVEIT 241
+++DI+V P + HV +P S GY IY ++KL+ + L G++I K+ + G E T
Sbjct: 113 VKDDILVIPVRNEHVPVPPAITRSLGYKIYQTKRKLRPELAGLSGEEIRKIGIEKGKEAT 172
Query: 242 DIILSPEV-AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE-HAQQHGHTHLS 299
+ + + +++GDT + + + KILI EATFL+ E I+ HA ++ H+ L
Sbjct: 173 TMEVRTNILSYSGDTPVDDLHKWDDT-----KILIHEATFLEREEEIKVHAHKNKHSRLD 227
Query: 300 EIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
E+IE + ++L HFSSRY+ I A+ +L + + +
Sbjct: 228 EVIEMVSASNIETLILGHFSSRYNAAQIDDAIRQLCDRYALNI 270
>gi|329930824|ref|ZP_08284223.1| ribonuclease Z [Paenibacillus sp. HGF5]
gi|328934526|gb|EGG31031.1| ribonuclease Z [Paenibacillus sp. HGF5]
Length = 308
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 123/274 (44%), Gaps = 37/274 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G + P + + VFITH H DH+ GLP ++SRG + P TI+ PP
Sbjct: 36 FDCGEGTQHQILKSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
IK +E I +S V ++++ G +E N +V K H S GY +
Sbjct: 96 IKVFIETTLSISQS--RVPYTMEVIEHTGGVLFEDDN-FLVESAKLDHRAESYGYRVVEK 152
Query: 213 -----LLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
L K+L Y LK G+ +E + +D++L+P+ V GDT
Sbjct: 153 DLPGSLDLKRLADYGLKPGPLYGKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ D A +L+ EATF++D + H ++ H+ + E AK KA+ L
Sbjct: 213 RPCAGVEALAKD---ADLLVHEATFMEDLAELAH--EYYHSTAKQAAEAAKRAGVKALFL 267
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
THFSSRY D Q +L ++ A L E F
Sbjct: 268 THFSSRYKDIDHLQPLLNEAREIFAN-TRLAEDF 300
>gi|261406217|ref|YP_003242458.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
gi|261282680|gb|ACX64651.1| ribonuclease Z [Paenibacillus sp. Y412MC10]
Length = 309
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 123/274 (44%), Gaps = 37/274 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G + P + + VFITH H DH+ GLP ++SRG + P TI+ PP
Sbjct: 36 FDCGEGTQHQILKSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
IK +E I +S V ++++ G +E N +V K H S GY +
Sbjct: 96 IKVFIETTLSISQS--RVPYTMEVIEHTGGVLFEDDN-FLVESAKLDHRAESYGYRVVEK 152
Query: 213 -----LLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
L K+L Y LK G+ +E + +D++L+P+ V GDT
Sbjct: 153 DLPGSLDLKRLADYGLKPGPLYGKLKRGESVELGDGRWIHASDVLLTPKKGRVVTILGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ D A +L+ EATF++D + H ++ H+ + E AK KA+ L
Sbjct: 213 RPCAGVEALAKD---ADLLVHEATFMEDLSELAH--EYYHSTAKQAAEAAKRAGVKALFL 267
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
THFSSRY D Q +L ++ A L E F
Sbjct: 268 THFSSRYKDIDHLQPLLNEAREIFAN-TRLAEDF 300
>gi|346972752|gb|EGY16204.1| hypothetical protein VDAG_07368 [Verticillium dahliae VdLs.17]
Length = 341
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 123/286 (43%), Gaps = 49/286 (17%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G + + +F+THGH DH+ P +V
Sbjct: 32 YVLTGKSRAAWHTSFVIPQLNLLLDAGLVVNKE-RPKHIFLTHGHSDHVLLSPAFVKRE- 89
Query: 141 LYNLKPPTIFVPPSIKEDVEKLF---EIHRSLGNVELN-LDLVALDV----------GET 186
PP I+ P +K + + G+++ + + L V G T
Sbjct: 90 ----DPPDIYCPVEMKRFFDDYILAKTMMNRGGHIQYDEAEARGLPVDKDAPDVDDDGRT 145
Query: 187 YEMR--------------NDIVVRP--------FKTHHVIPSQGYVIYLLRKKLKKQYIH 224
R ++I +R F+ H +P GYV +LK +Y
Sbjct: 146 PSQRAFLGTHVTHPVVPGDEIPLRRLKGMSATVFQCDHNVPCVGYVFSTTTHRLKPEYTS 205
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN--PRNADALRAKILITEATFLD 282
L G +I+ L+ SGV+IT SP AF GDTT+ + P D + ++ITE +FL
Sbjct: 206 LSGNEIKALRTSGVDITAPHTSPVFAFLGDTTASVLAAEPPWLRDGI--PVVITECSFLY 263
Query: 283 DEMSIEHAQQHGHTHLSEI-IENAKWIRNKAVLLTHFSSRYHIEDI 327
+E + A++ HT+ ++ + +W V++ HFS RY E +
Sbjct: 264 EEHRAQ-AEKTKHTYWPDLEVVVRRWPETTFVIM-HFSMRYSDEQV 307
>gi|15791057|ref|NP_280881.1| hypothetical protein VNG2239C [Halobacterium sp. NRC-1]
gi|169236807|ref|YP_001690007.1| ribonuclease Z [Halobacterium salinarum R1]
gi|41017581|sp|Q9HN60.1|RNZ_HALSA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808640|sp|B0R7E2.1|RNZ_HALS3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|10581652|gb|AAG20361.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727873|emb|CAP14661.1| ribonuclease Z [Halobacterium salinarum R1]
Length = 308
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+P + A A +LI +ATF +D + E A + GH+ E + A KA+ LT
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGEAADVATEAGAKALALT 267
Query: 317 HFSSRY 322
H SSRY
Sbjct: 268 HVSSRY 273
>gi|374990010|ref|YP_004965505.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
gi|297160662|gb|ADI10374.1| hypothetical protein SBI_07254 [Streptomyces bingchenggensis BCW-1]
Length = 327
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 118/264 (44%), Gaps = 25/264 (9%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+T+ G S +T IPEL+C+ D G C R Q + V +TH H DH L ++ASR
Sbjct: 34 FTLTGYSRANDKTFFHIPELRCSLDAGLCEGR--QVDTVLLTHTHHDHAKDLD-FLASRA 90
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLG---NVELNLDLVALDVGETYEM-RNDIVVR 196
++ P V P ++ + E++ G ++ L + G+ + R VR
Sbjct: 91 GTDIYLPAEAV-PYVESFLRASAELNHGAGYDPDLAGGYRLHGVRQGDEFTFGRRAHHVR 149
Query: 197 PFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSGVEITDII 244
+ H +P GY + + K L QY L+ G+ + + +K G++ +
Sbjct: 150 VLECEHKVPCVGYAVSEVGKALLPQYEELRRSLVEEGRGGEFGRIMARRRKEGIKTEQDV 209
Query: 245 LSPEVAFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
P A+ GDT S F NP ++ITE TFL D + A + GHT S +
Sbjct: 210 RRPLFAYLGDTHVSVFERNPW---LFTYPVVITECTFLHDS-ELGRADRVGHTVWSRLRP 265
Query: 304 NAKWIRNKAVLLTHFSSRYHIEDI 327
+ +LTHFS R+ +D+
Sbjct: 266 VVEAHPETLFVLTHFSLRHSDQDV 289
>gi|358397598|gb|EHK46966.1| hypothetical protein TRIATDRAFT_239349 [Trichoderma atroviride IMI
206040]
Length = 330
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 48/279 (17%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP L D G + + +F+THGH DH P +V
Sbjct: 34 LTGRSRAAWHTSFVIPSLNLLLDAGLV-VNSQRPKHIFLTHGHSDHTLLAPAFVKRD--- 89
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGN------------VELNLDLV----------- 179
PP +F P +++ ++ F + ++L N V L +D
Sbjct: 90 --DPPDVFCPAEMRDALDD-FVLAKTLLNRGGEIGVEDAAAVGLAVDDAVAARSEALGRS 146
Query: 180 -------------ALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
AL G+ +R I F+ HH +P GYV ++L+ +
Sbjct: 147 PSATAFLGTHRTHALQPGDVVPLRRAPGITATAFRCHHQVPCLGYVFSKTTQRLRPELAS 206
Query: 225 LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
L G +++ L+K+G ++T +P AF GDTT+ + ++I E +FL +E
Sbjct: 207 LAGPELQALRKAGEQLTAPHTAPIFAFMGDTTAATLAEAPAWLREGIPVVIHECSFLYEE 266
Query: 285 MSIEHAQQHGHTHLSEIIEN-AKWIRNKAVLLTHFSSRY 322
+ A+ HT S++ +W R V LTHFS RY
Sbjct: 267 HRAQAAKTK-HTLWSDLEPVIRRWPRTTFV-LTHFSMRY 303
>gi|383787054|ref|YP_005471623.1| beta-lactamase superfamily metal-dependent hydrolase
[Fervidobacterium pennivorans DSM 9078]
gi|383109901|gb|AFG35504.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Fervidobacterium pennivorans DSM 9078]
Length = 278
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 111/229 (48%), Gaps = 23/229 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL-- 174
VF+THGH+DHI GL + +R + + + P PS + +E + R N EL
Sbjct: 44 VFLTHGHVDHIAGLWSIINTRNNAMGDREKPLTVYYPSGNKGIELYADFLRK-ANSELRF 102
Query: 175 NLDLVALDVGETYEMRNDIV----VRPFKTHHVIPSQ--GYVIYLLRKKLKKQYIHLKGK 228
LD V L GE +RN ++PF H GY + +R++LK++Y +L +
Sbjct: 103 KLDFVPLKDGEKVFLRNSTTTNRYIKPFSVVHTYSETAFGYHLIEVRRRLKEEYRNLPKE 162
Query: 229 QIEKLKKS-GVE-ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS 286
+I +L KS G E +T+ + +GDT + + D +IL E TFL
Sbjct: 163 EITRLVKSYGSESVTETYEKKILTISGDT-----ILLKKEDVADTEILFHECTFLKK--- 214
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E + + H L E+IE K + ++L H SSRY I I + + K+Q
Sbjct: 215 -EDRKFNNHASLDEVIELVKDANVQTLILYHISSRY-IRSIEKVIKKIQ 261
>gi|374339445|ref|YP_005096181.1| beta-lactamase superfamily metal-dependent hydrolase [Marinitoga
piezophila KA3]
gi|372100979|gb|AEX84883.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Marinitoga piezophila KA3]
Length = 276
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 23/245 (9%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD+G + A+ +FI+H H+DHI GL ++ +R
Sbjct: 11 YTTWVYYKPDRLLFDVGEGISAALGNKIYSIEKIFISHSHVDHIAGLWGFINTRNNAMGS 70
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHH 202
K TI+ P K E L I R + L+ + ++ G+ ++N+ ++ FKT H
Sbjct: 71 REKGLTIYYPKGSKNIEEYLNFIQRMNKYLRFKLEFITVEHGDIIPLKNNRYLKIFKTRH 130
Query: 203 V--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIILSPEVAFTGDTTSE 258
S G+ I RK+LK +Y +L G +I++L K G E I + V +GD+
Sbjct: 131 TPGEKSVGFQILENRKRLKSEYQNLSGNEIKELISKMGKENILEKYTKKLVTISGDSL-- 188
Query: 259 FMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317
P + D + + IL+ E TF+ + + + HT L EI + I+ K V+L H
Sbjct: 189 ----PVSPDIIEDSDILVHECTFIRE----KDRKLRNHTSLDEIKKLLTQIKPKKVILYH 240
Query: 318 FSSRY 322
SSRY
Sbjct: 241 ISSRY 245
>gi|358380828|gb|EHK18505.1| hypothetical protein TRIVIDRAFT_58477 [Trichoderma virens Gv29-8]
Length = 331
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 117/283 (41%), Gaps = 46/283 (16%)
Query: 83 IEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY 142
+ G S T +IP L D G + +F+THGH DH P +V
Sbjct: 35 LTGRSRAAWHTSFVIPSLNLLLDAGLV-VNNQRPKHIFLTHGHSDHTLLAPAFVKRD--- 90
Query: 143 NLKPPTIFVPPSIK---------------------ED------------VEKLFEIHRSL 169
PP IF P ++ ED V + E+ R+
Sbjct: 91 --DPPDIFCPMEMRTAFDNFVLAKTILNLGGEIGPEDADIRGLPIDDQVVARSEELGRTP 148
Query: 170 GNVE-LNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
+ LN L G++ +R I F+ H +P GYV ++LK ++ L
Sbjct: 149 SSTAFLNTHFTHGLHPGDSVPLRRAQGITATAFRCDHTVPCLGYVFSKTTQRLKPEFASL 208
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
G +++ L++SG E+T +P AF GDTT++ + + ++ITE +FL +E
Sbjct: 209 SGPELQALRRSGTELTAPHTTPIFAFLGDTTTQTLEAEPSWLQEGIPVVITECSFLYEEH 268
Query: 286 SIEHAQQHGHTHLSEIIENA-KWIRNKAVLLTHFSSRYHIEDI 327
+ + HT ++ + KW R V LTHFS RY +I
Sbjct: 269 EAQGIKTK-HTSWRDLEKVVRKWPRTTFV-LTHFSMRYDDAEI 309
>gi|433542376|ref|ZP_20498803.1| ribonuclease Z [Brevibacillus agri BAB-2500]
gi|432186187|gb|ELK43661.1| ribonuclease Z [Brevibacillus agri BAB-2500]
Length = 301
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 123/281 (43%), Gaps = 54/281 (19%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPP 153
FD G R P + Q + +FITH H DH+ GL +ASR L N + P ++ PP
Sbjct: 17 FDCGEGTQHQLLRSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPP 76
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ + +I S +++ LDL + G YE D++V K H +PS Y +
Sbjct: 77 GLDRYFRAIMDI--SPVHLQYPLDLCIVSEGVVYE-DEDVIVTCRKAKHRVPSFAYSV-- 131
Query: 214 LRKKLKKQYIHLKGKQIEKLKKSGV-----------------------EITDIILSPE-- 248
L K ++ +E+ K +GV + D + +P+
Sbjct: 132 LEKDKPGAFL------VERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPG 185
Query: 249 --VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
+ F+GDT A A +L+ EAT+ D + E A + GH+ E E AK
Sbjct: 186 RKIVFSGDTEP---CQSVEELAAGADLLVHEATYADRDK--ELAVRSGHSTAKEAAELAK 240
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
KA+ LTHFS RY ED ++ L ++ A + P T+
Sbjct: 241 RAGVKALCLTHFSPRYEDEDGDFSMADLLAEAQA-IFPETQ 280
>gi|157364451|ref|YP_001471218.1| beta-lactamase domain-containing protein [Thermotoga lettingae TMO]
gi|157315055|gb|ABV34154.1| beta-lactamase domain protein [Thermotoga lettingae TMO]
Length = 278
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 121/262 (46%), Gaps = 31/262 (11%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQN-----FVFITHGHLDHIGGLPMYVASRGLY--- 142
+ T V + FD G + + ++F+THGH+DHI GL V +R
Sbjct: 10 YSTWVYYAPERILFDAGEGVSLTMSNKIYAIRYIFLTHGHIDHISGLWTIVNTRNNSMGD 69
Query: 143 NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN----DIVVRPF 198
KP T++ P + + I ++ ++ + + + GE +R V PF
Sbjct: 70 REKPLTVYYPKGNTAIEDWINFIKQANNDLRFEFNHIPVSAGEKVFLRQAGNFARYVVPF 129
Query: 199 KTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKLKK--SGVEITDIILSPEVAFTGD 254
K H S GY I R++LK++Y +L K+I +L K IT+ + +GD
Sbjct: 130 KVKHTSQDMSLGYSIIETRRRLKEEYRNLPEKEILELSKKLGSSNITEFYEKKILTISGD 189
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T F ++P NA ++IL+ E TFL + + H L E+++ AK K ++
Sbjct: 190 T---FGIDPENARD--SEILLHECTFLRS----SDRKMNAHASLEEVLDIAKSAEVKKLI 240
Query: 315 LTHFSSRY------HIEDIRQA 330
L H SSRY ++++I++A
Sbjct: 241 LYHISSRYSGKIDRYLKNIKEA 262
>gi|332796924|ref|YP_004458424.1| ribonuclease Z [Acidianus hospitalis W1]
gi|332694659|gb|AEE94126.1| ribonuclease Z [Acidianus hospitalis W1]
Length = 288
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 52/243 (21%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
N + ITH H DH+ GLP + + G+Y+ K +++ +K+ + K+FE + +
Sbjct: 53 NLIAITHLHADHVLGLPSLIQTMGMYSRKEK-LYIIGDVKDLLNKVFE--ETYFEPPFKI 109
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ V ++YE N++ + PFKT HV+ SQG YL+ +K KK IEKL K
Sbjct: 110 EYV-----DSYE-DNELKITPFKTCHVVKSQG---YLIEEKDKKNI------DIEKLTKE 154
Query: 237 GVEITDII---------------LSPE----------VAFTGDTT-SEFMLNPRNADALR 270
G++ II L PE +A+TGDT + ++N
Sbjct: 155 GIKDWRIIRQLKAGKEVIFNGRKLYPEDYLITKKGIRIAYTGDTAICDSVINSVKG---- 210
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+LI ++TFLDD +A+++GH+ +++ AK K + L H S RY I +
Sbjct: 211 VDLLIHDSTFLDD----INAKEYGHSTVTDAATVAKEAGVKRLALVHISGRYKDAKIMEE 266
Query: 331 VLK 333
+ K
Sbjct: 267 IAK 269
>gi|399053459|ref|ZP_10742311.1| ribonuclease Z [Brevibacillus sp. CF112]
gi|398048824|gb|EJL41290.1| ribonuclease Z [Brevibacillus sp. CF112]
Length = 319
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 38/273 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPP 153
FD G R P + Q + +FITH H DH+ GL +ASR L N + P ++ PP
Sbjct: 35 FDCGEGTQHQLLRSPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNGEAPPLALYGPP 94
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
+ + +I S +++ LDL + G YE D++V K H +PS Y +
Sbjct: 95 GLDRYFRAIMDI--SPVHLQYPLDLCIVSEGVVYE-DEDVIVTCRKAKHRVPSFAYSVLE 151
Query: 213 ------LLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGD 254
L ++ K + +G+Q+ ++ D + +P+ + F+GD
Sbjct: 152 KDKPGAFLVERAKAAGVPSGPLFGALKRGEQVMLPDGRVLDGKDFVGAPQPGRKIVFSGD 211
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T A A +L+ EAT+ D + E A + GH+ E E AK KA+
Sbjct: 212 TEP---CQSVEELAAGADLLVHEATYADRDK--ELAVRSGHSTAKEAAELAKRAGVKALC 266
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
LTHFS RY ED ++ L ++ A + P T+
Sbjct: 267 LTHFSPRYEDEDGDFSMADLLAEAQA-IFPETQ 298
>gi|222100685|ref|YP_002535253.1| RNAse Z [Thermotoga neapolitana DSM 4359]
gi|221573075|gb|ACM23887.1| RNAse Z [Thermotoga neapolitana DSM 4359]
Length = 280
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 126/270 (46%), Gaps = 26/270 (9%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR-----CPTRAIQQNFVFITHGHLDHIGGLPMYV 136
I G S T + + FD G ++ +VF+THGH+DHI GL V
Sbjct: 2 NIIGFSKALFSTWIYYSPERILFDAGEGVSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVV 61
Query: 137 ASR--GLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-- 191
R G+ + KP +F P + E I ++ + + ++ L+ G+ +R+
Sbjct: 62 NIRNNGMGDREKPLDVFYPKGNRAVEEYTSFIKKANPELRFSFNVHPLEEGDRVFLRDAG 121
Query: 192 --DIVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIIL 245
V+PF+T HV S GY I+ +R+KLK+++ L K I +L K+ G + +T
Sbjct: 122 GFKRYVQPFRTKHVATEVSFGYHIFEVRRKLKEEFQGLDSKVIARLVKEKGRDFVTREYH 181
Query: 246 SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ +GD+ + L+P + ++LI E TFLD + H + E++E
Sbjct: 182 KKILTISGDSLA---LDPEEVEG--TELLIHECTFLDP----RDRRYKNHASIDEVMETV 232
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
K K V+L H S+RY I IR + K +
Sbjct: 233 KKAGVKRVILYHISTRY-IRSIRSVIKKYR 261
>gi|124005252|ref|ZP_01690093.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
gi|123989074|gb|EAY28652.1| hypothetical protein M23134_07750 [Microscilla marina ATCC 23134]
Length = 314
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 119/272 (43%), Gaps = 36/272 (13%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
+TIEG S G +T IP+LK D R Q ++V +TH H DHI + Y+ASR
Sbjct: 20 FTIEGYSRSGDKTFFYIPQLKLCLDAALAEGR--QGDYVLVTHTHNDHIADIE-YLASRN 76
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN-------VELNLDLVALDVGETYEM-RND 192
I++P + + +E+ R L + + + + + G+T+ + +ND
Sbjct: 77 -----GVQIYLPKASQNYLEEYIIARRCLNHSAPYNPRLRGSYSITGVAGGDTFYIGKND 131
Query: 193 -IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI----------------EKLKK 235
V+ H I GY +++LK +Y LK +++ ++ K+
Sbjct: 132 RYQVKVVNCEHSIVCVGYAFAEKKQRLKPEYEALKQQKMAEGKMQEFGQLMAQKKQEAKQ 191
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
G + + P F GDT + N NA +ITE TFL ++ +A + H
Sbjct: 192 KGETVEETYYQPLFVFMGDTHASVFDN--NAWLFDYPTIITECTFLKP-VNEAYANERCH 248
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
TH + + +LTHFS RY ++I
Sbjct: 249 THWKHLKPHINQHPKCQFVLTHFSFRYTSQEI 280
>gi|146304551|ref|YP_001191867.1| ribonuclease Z [Metallosphaera sedula DSM 5348]
gi|172046934|sp|A4YHP1.1|RNZ_METS5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145702801|gb|ABP95943.1| RNAse Z [Metallosphaera sedula DSM 5348]
Length = 291
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 38/227 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + ITH H DH+ GLP + + G+Y+ K I P +K+ + + FE R+ +
Sbjct: 54 NVIAITHLHADHVLGLPSLIQTMGMYDRKERLYILGPEGLKDLLTETFE--RTYFSPNFP 111
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
++ V+ +YE + I VRPF+T HV+PSQGY++ L ++L+++ + +
Sbjct: 112 IEFVS-----SYESQG-IRVRPFRTCHVVPSQGYLVEEKDTANLDAERLRREGV--TDWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ ++ K G E+ D +L PE +A+TGDT E ++N +L+
Sbjct: 164 VMRMLKEGKEVPWGDRVLKPEDYLIVKRGIRIAYTGDTRPCETVINSVKG----VDLLLH 219
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
++TF E I+ A ++GH+ +E A+ K + L H S+RY
Sbjct: 220 DSTF---EQGID-ASEYGHSTSTEAATVAREAEVKRLALIHISARYR 262
>gi|354609683|ref|ZP_09027639.1| Ribonuclease Z [Halobacterium sp. DL1]
gi|353194503|gb|EHB60005.1| Ribonuclease Z [Halobacterium sp. DL1]
Length = 309
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 110/250 (44%), Gaps = 42/250 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP V + + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYGTGFDVSDVFVTHVHGDHVLGLPGLVQTWDFNDRQEPLTIHVPRGV 94
Query: 156 KEDVEKL-FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
VE+L F I G+V + + + GE R + VR F+T H S GY +
Sbjct: 95 GRSVEQLVFAIG---GDVGYPVSVEEVGPGEVAVDREEFQVRTFQTDHRTASVGYALVED 151
Query: 215 RKK--------------LKKQYIHL-KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
+K + ++ HL G+ +E + V ++ P + +TGDT
Sbjct: 152 DRKGRFDRERAEELGVPVGPKFSHLHDGEAVELDDGTVVRPEQVVGDPRPGRTLVYTGDT 211
Query: 256 TSEFMLNPRNA---DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
P +A A A +LI +ATF DD + E A Q GH+ E + A A
Sbjct: 212 ------RPHDAVVAAAEGADLLIHDATFADD--AAERAAQTGHSTAGEAADIATRAGVAA 263
Query: 313 VLLTHFSSRY 322
+ LTH SSRY
Sbjct: 264 LALTHISSRY 273
>gi|317049963|ref|YP_004117611.1| ribonuclease Z [Pantoea sp. At-9b]
gi|316951580|gb|ADU71055.1| ribonuclease Z [Pantoea sp. At-9b]
Length = 303
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + LK P TI+ P I++ ++ + S L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLKEPLTIYGPQGIRQFIDTALSLSGSY--TSFPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI-----HL 225
+V + G ++ D V + +H++ GY I +L +LK + + +
Sbjct: 116 IVEIAAGLVFD-DGDFRVTAWPMNHIVECYGYRIEQHDKPGFLDAPRLKAEGVPRGPWYQ 174
Query: 226 KGKQIEKLK-KSGVEITDI-ILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+ KQ E+++ + G EI L P VA GDT + ADA +++ E
Sbjct: 175 QLKQGERVRLEDGREINGAEYLGPATKGKVVAIFGDTGPTEVALQLAADA---DVMVHET 231
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
T + E A GH+ + E AK R K ++ THFSSRY +D + + + QS
Sbjct: 232 TL--EAALAEKANSRGHSTTVQTAEVAKQARAKRLIATHFSSRYLSQDRERLLAECQSIF 289
Query: 339 SA 340
+A
Sbjct: 290 AA 291
>gi|224476616|ref|YP_002634222.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254808665|sp|B9DNT1.1|RNZ_STACT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222421223|emb|CAL28037.1| putative ribonuclease Z [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 306
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DHI GLP + SR KP TI P IK VE + SL +
Sbjct: 57 NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQ--ASLSRLNY 114
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GK 228
+ + +D Y V + +H +PS GY I K L+ G
Sbjct: 115 PVTFIEIDDQLHYHHEG-FTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPGP 173
Query: 229 QIEKLKKSGVEI-TDII-----------LSPEVAFTGDTT---SEFMLNPRNADALRAKI 273
+ +++K S I D + + P++A GDT +E L A A +
Sbjct: 174 KYQEVKNSDSFIFNDKVYQSSDFKGEEKVGPKIAIFGDTMPCENELKL------ADNADL 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
L+ EAT++D + S+ A H H+H+++++ + +K LL H S+RY++ DI +
Sbjct: 228 LVHEATYIDGDRSL--ADSHHHSHINDVLHLLEATNSKQALLNHISNRYNLSDIDVIYAE 285
Query: 334 LQSK 337
LQ++
Sbjct: 286 LQNQ 289
>gi|163754440|ref|ZP_02161562.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
gi|161325381|gb|EDP96708.1| hypothetical protein KAOT1_16133 [Kordia algicida OT-1]
Length = 288
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 132/295 (44%), Gaps = 41/295 (13%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGR--CPT---RAIQQNFVFITHGHLDHIGGLPMYV 136
TI G S + T I EL FD G C +A + FI+H DH+ GL +
Sbjct: 4 TIHGYSTALYATWYFIEELGILFDAGDGVCANLLGKAGKIKHAFISHADRDHLTGLLQF- 62
Query: 137 ASRGLYNLKPPTIFVPPS-----IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN 191
L+ PTI+ P D F+ H N + A+ + ++N
Sbjct: 63 --NQLFAGLKPTIYYPKDAGSFPFLNDFFTKFDPHNKGTNWQ------AIKDKAIFSVKN 114
Query: 192 DIVVRPFKTHHVI-----PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246
I V + HV+ S + ++ ++KLK ++++L +++ +KK E D L+
Sbjct: 115 SIQVEAIENGHVVQPGLLKSLSFKVFETKRKLKSKFVNLNKEELINIKK---EHGDHFLT 171
Query: 247 PEV-----AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEI 301
E+ +++GDT E N++ ILI EATF+ E + A ++ H+ L E+
Sbjct: 172 NELKRNILSYSGDTPIEDYERYHNSE-----ILIHEATFMTKEETNTKAFKNKHSSLDEV 226
Query: 302 IENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKV----VPLTEGFKSV 352
+ I+ ++L HFSSRY +I + K + + K+ +P+ + K++
Sbjct: 227 FKMVANIKIDKLILGHFSSRYDQHEIDNEIKKHIQQYNIKIPVHRIPVGKAVKNI 281
>gi|358051251|ref|ZP_09145467.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
gi|357259264|gb|EHJ09105.1| ribonuclease Z [Staphylococcus simiae CCM 7213]
Length = 306
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 117/277 (42%), Gaps = 38/277 (13%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP ++SR + KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSLKLGKVSHIFITHMHGDHIFGLPGLLSSRSFQGGDGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IKE VE + SL LN + +++ E +D V +H IPS GY I
Sbjct: 96 GIKEFVE----MSLSLSESHLNYPITYIEIDEDLSYSHDGFTVEARILNHGIPSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDII-----------------LSPEVAFTGD 254
L+ +E K V++ D P +A GD
Sbjct: 152 APETTGTINVQALRDIGLEPGPKYQEVKLQDTFEYNGQLYQSQDFRGQSKKGPIIAIFGD 211
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T A A +++ EAT+++ E ++ A + H+H+ ++ + K + K L
Sbjct: 212 TKP---CANEQYIAQYADLMVHEATYIEGEKTL--ANNYHHSHIDDVFDLIKHAQVKHSL 266
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351
+TH S+RY++EDI Q LQ+K + F S
Sbjct: 267 ITHLSNRYNVEDIEQINQALQNKADTPQFSFVKDFDS 303
>gi|330834309|ref|YP_004409037.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
gi|329566448|gb|AEB94553.1| ribonuclease Z [Metallosphaera cuprina Ar-4]
Length = 291
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 122/237 (51%), Gaps = 36/237 (15%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNV 172
++ N + ITH H DH+ GLP + + G+Y+ K + P S+KE ++ FE +
Sbjct: 51 MRVNLIAITHLHADHVLGLPSLIQTMGMYDRKEKLYLMGPESLKEFLKVSFE--HTYFRP 108
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV------IYLLRKKLKKQYI--- 223
++ V+ TYE + + VRPFKT HV+PSQG++ I L ++LK++ I
Sbjct: 109 GFPIEFVS-----TYEDKK-VRVRPFKTCHVVPSQGFLVEEIDSINLDVERLKREGITDW 162
Query: 224 ----HLKGKQIEKLKKSGVEITDIIL---SPEVAFTGDTT-SEFMLNPRNADALRAKILI 275
LKG + K+ + ++ D ++ +A+TGDT + ++N A +L+
Sbjct: 163 RVMRELKGGREVKVGERTLKSEDYLVVKRGVRLAYTGDTRPCDSVINS----AKGVDLLL 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED--IRQA 330
++TF D I+ A ++GH+ SE A+ + + L H SSRY D ++QA
Sbjct: 219 HDSTFED---GID-ASEYGHSTSSEAALVAREAEARRLALIHISSRYKKTDEMLKQA 271
>gi|156338764|ref|XP_001620031.1| hypothetical protein NEMVEDRAFT_v1g223552 [Nematostella vectensis]
gi|156204276|gb|EDO27931.1| predicted protein [Nematostella vectensis]
Length = 607
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 44/274 (16%)
Query: 93 TCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNLKPP 147
T I EL FD G + VFI+H DH+ GL Y L++ P
Sbjct: 182 TWYFIEELGILFDAGDGLVSGLMGKCGKIKKVFISHADRDHLTGLLQY---NQLFSHIGP 238
Query: 148 TIFVPPSIK-----EDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHH 202
TI+ P + E K F+ H + E +D G+ ++ I V + H
Sbjct: 239 TIYYPKGSQSFPFLEAFTKKFDPHIQGTSWE------PIDTGQYIAIKERISVESLENEH 292
Query: 203 VIPSQG------YVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE-----VAF 251
V ++G Y ++ +KKLK +++ + + I+K++ +E + L E +++
Sbjct: 293 VYTTEGIIKSLSYKVWETKKKLKTEFLGMPSEAIKKIR---IEKGESFLMEEQKTNLLSY 349
Query: 252 TGDTTSEFMLNPRNADALR---AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
+GDT D R +K+LI EATFL E + ++ H+ L E+ E
Sbjct: 350 SGDTPV--------VDYTRFEGSKVLIHEATFLTKEETQTKNDKNRHSSLEEVFEMVANC 401
Query: 309 RNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
+ ++L HFSSRY+ E+I + + +L + + K+
Sbjct: 402 NIEQLILGHFSSRYYNEEIDKKIKELIAFYNIKI 435
>gi|425737321|ref|ZP_18855594.1| ribonuclease Z [Staphylococcus massiliensis S46]
gi|425482669|gb|EKU49825.1| ribonuclease Z [Staphylococcus massiliensis S46]
Length = 305
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 124/280 (44%), Gaps = 68/280 (24%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEATQHQILHHSIKLGKVSHIFITHMHGDHIFGLPGVLTSRSFQGGEDKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-----HHVIPSQG 208
IK VE ++ +S ++ +D++ LD +EM D+V+ F+ +H IPS G
Sbjct: 96 GIKSFVEMNLKLSQS--HLNYPIDVIELD----HEM--DLVINEFQVTAKILNHGIPSYG 147
Query: 209 YVIYLLRKKLKKQYIHLKGK-QIEKLKKSGVEITDIIL---------------------- 245
+ I + GK +EKL++ G+E +
Sbjct: 148 FRI---------EAPSTVGKLDVEKLREIGMEPGPLYQQVKSEDTFSYNGEIYHSRDFRG 198
Query: 246 ----SPEVAFTGDTTSEFMLNPRNADAL--RAKILITEATFLDDEMSIEHAQQHGHTHLS 299
P ++ GDT N D L A +++ EATFLD + ++ AQ + H+H+
Sbjct: 199 PSKKGPVISVLGDTKP-----CSNEDVLVENADVMVHEATFLDGDKTL--AQNYHHSHID 251
Query: 300 EIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVS 339
++ E + K LTH S+RY IED+ + +L++ S
Sbjct: 252 DVFELMQRNDVKYSCLTHISNRYTIEDVEEIEAELKAGFS 291
>gi|392967329|ref|ZP_10332747.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
gi|387844126|emb|CCH54795.1| hypothetical protein BN8_04000 [Fibrisoma limi BUZ 3]
Length = 292
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 31/280 (11%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQ-----NFVFITHGHLDHIGGL---P 133
TI G S T I EL+ FD G ++ Q + +F++H DH+ GL
Sbjct: 4 TITGYSTALFATWYFIEELRLLFDAGDGVAASLLQKSRKIDHIFLSHADRDHVTGLLRLN 63
Query: 134 MYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
A GL P +F P S+ ++F + L + E E++ND
Sbjct: 64 ELNAREGL-----PQLFFPADSMSFPALEVFS--KQLDERVKQTRWTPIRADEQIEIQND 116
Query: 193 IVVRPFKTHHVIPSQ-------GYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVE-ITDI 243
V + +H + +Q GY +Y +R KLK + L G+ + +L G E +T
Sbjct: 117 TFVESVRNNHAVRAQPHEIKSLGYQVYQVRHKLKPDLLSLPGETLRQLATDIGKENMTYE 176
Query: 244 ILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFL-DDEMSIEHAQQHGHTHLSEII 302
+ + +A++GDT E N ILI EATFL ++E + ++ H+ L ++
Sbjct: 177 VRTNLLAYSGDTPIENFDRWDN-----TGILIHEATFLTNEEFAGLDTNRNRHSTLESVL 231
Query: 303 ENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
+ + ++L HFSSRY +I +A+ + + K+
Sbjct: 232 QIVADLHIDTLILGHFSSRYSHAEIDEAIRRFCKQFGVKI 271
>gi|336121415|ref|YP_004576190.1| ribonuclease Z [Methanothermococcus okinawensis IH1]
gi|334855936|gb|AEH06412.1| Ribonuclease Z [Methanothermococcus okinawensis IH1]
Length = 314
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 54/286 (18%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FITH H DHI GLP + S G +P I+ PP
Sbjct: 33 FDCGEGAQRQMIYTDISPMKINNIFITHLHGDHILGLPGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIY 212
KE +E + +I ++ N+ + L ++++ + + +H +P+ GY+
Sbjct: 93 TKETIENILKI--GYHSINFNIKVYELSTKNPMKIKDTEKYEIYSYPMNHSVPTVGYI-- 148
Query: 213 LLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE----VA 250
R+K K Q ++LK G +++LK K+G I D++L P+ +
Sbjct: 149 -FREKKKPQ-LNLKKAIELGVEVGPNLKRLKDGYPIKIKNGKIIYPEDVLLPPKKGICIG 206
Query: 251 FTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
++GDTT EF+ +L ILI EATF D ++A + H+ + + + A
Sbjct: 207 YSGDTTPLEDFGEFL------KSLGCNILIHEATF--DSSKKDNALETMHSTIGDAVNIA 258
Query: 306 KWIRNKAVLLTHFSSRYH--IEDIRQAVLKLQSKVSAKVVPLTEGF 349
K ++LTH S+RY ++D V L ++ + + + E F
Sbjct: 259 KIAGVTELILTHISARYDDKMDDYINEVNSLNAENNNLNITIAEDF 304
>gi|315646598|ref|ZP_07899716.1| ribonuclease Z [Paenibacillus vortex V453]
gi|315278241|gb|EFU41561.1| ribonuclease Z [Paenibacillus vortex V453]
Length = 309
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 115/258 (44%), Gaps = 36/258 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK-PPTIFVPPS 154
FD G + P + + VFITH H DHI GLP ++SRG + P I+ PP
Sbjct: 36 FDCGEGTQHQILKSPLKLSKLEKVFITHMHGDHIFGLPGLLSSRGAQGVTLPLAIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
IK +E I +S V ++++ G +E + V K H S GY I
Sbjct: 96 IKSFIETTLNISQS--RVPYTMEIMEHTGGVLFE-DDSFRVEAAKLDHRAESYGYRIEEK 152
Query: 212 ---------YLLRKKLKKQYIHLKGKQIEKLKKSG---VEITDIILSPE----VAFTGDT 255
L LK ++ K K+ E + G + +D++L+P+ V GDT
Sbjct: 153 DLPGSLDLKRLEAYGLKPGPLYGKLKRGESVDLGGGRWIHASDVLLTPKKGRVVTILGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ + A +L+ EATF+DD + H ++ H+ + E A+ K + L
Sbjct: 213 RPCPGVESLSKG---ADLLVHEATFMDDLTELAH--EYYHSTAKQAAEAAERAGVKTLFL 267
Query: 316 THFSSRYHIEDIRQAVLK 333
THFSSRY + Q +LK
Sbjct: 268 THFSSRYKDIEHLQPLLK 285
>gi|456970666|gb|EMG11417.1| beta-lactamase domain protein [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 104
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 247 PEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
P ++F+GDT E++L + D + IL E T++D+E ++ A++ GHTHL EI+ N
Sbjct: 5 PVISFSGDTKIEYVL--EHEDVANSSILFIECTYIDNERNVAQAREWGHTHLDEILNNLS 62
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLK 333
+N+ ++L HFS RY + IR+ + K
Sbjct: 63 SFKNEKIVLIHFSKRYSVSYIREVLDK 89
>gi|290958472|ref|YP_003489654.1| hypothetical protein SCAB_40281 [Streptomyces scabiei 87.22]
gi|260647998|emb|CBG71105.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 330
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 121/283 (42%), Gaps = 32/283 (11%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G T+ G S +T +PEL+C+ D G R ++ V +TH HLDH L Y+A+R
Sbjct: 34 GLTLTGYSRANDKTFFHLPELRCSVDAGLAEGRQVET--VLLTHTHLDHSKDLD-YLAAR 90
Query: 140 G----LYNLKPPTIFVPPSIKEDVE----KLFEIHRSLGNVELNLDLVALDVGETYEMRN 191
+Y + ++ E F+ R+ + L V + R
Sbjct: 91 DAGVDIYLPAAAEPYAAAYLRAASELNHGAGFDASRA---PDCRLHGVRPGAEFSVGRRG 147
Query: 192 DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSGVE 239
+ VR + H +P GY + LK +Y LK G+ I + +K G
Sbjct: 148 EYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGRAGEFGRIIAERRKEGPG 207
Query: 240 ITDI-ILSPEVAFTGDT-TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
D I P AF GDT S F NP D ++ITE T+LDDE + A+Q GHT
Sbjct: 208 TVDQEIRRPAFAFLGDTHPSVFARNPWLFDY---PVVITECTYLDDE-RLGRARQVGHTV 263
Query: 298 LSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSA 340
SE+ + +LTHFS R+ ++ + + + K A
Sbjct: 264 WSELRPVVEAHPETLFVLTHFSLRHSDREVVEFFRREREKGGA 306
>gi|354582803|ref|ZP_09001704.1| ribonuclease Z [Paenibacillus lactis 154]
gi|353199095|gb|EHB64561.1| ribonuclease Z [Paenibacillus lactis 154]
Length = 309
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 36/247 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G + P + + VFITH H DH+ GLP ++SRG + P TI+ PP
Sbjct: 36 FDCGEGTQHQILKSPLKLSKLEKVFITHMHGDHVFGLPGLLSSRGAQGVTAPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
IK +E I +S V ++++ G +E + V H S GY +
Sbjct: 96 IKSFIETSLSISQS--RVPYTMEIIEHTGGIIFEDKY-FRVEAAGLDHRADSYGYRVVEK 152
Query: 213 -----LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
L K+L+ QY LK G+ +E + D++L+P+ V GDT
Sbjct: 153 DLPGSLDPKRLEAYGLKPGPQYGKLKRGESVELGDGRWIHPADVLLAPKKGRVVTILGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ DA IL+ EATF++D + H ++ H+ + E A K++ L
Sbjct: 213 RPCPGVEVLAKDA---DILVHEATFMEDLAELAH--EYYHSTAKQAAEAAVRAGVKSLFL 267
Query: 316 THFSSRY 322
THFSSRY
Sbjct: 268 THFSSRY 274
>gi|212710279|ref|ZP_03318407.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
gi|212687086|gb|EEB46614.1| hypothetical protein PROVALCAL_01338 [Providencia alcalifaciens DSM
30120]
Length = 305
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 36/243 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVEIVLSVSDSF--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ GE ++ ++VV ++ H + GY I L +KL++ I +G +
Sbjct: 117 IVEIEAGELFD-DGELVVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQDGIP-RGPWM 174
Query: 231 EKLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LKK V D + P VA GDT T E +L +NA+ +++
Sbjct: 175 QALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTPTPEALLLAKNAN-----VMV 229
Query: 276 TEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
E T E+++E A +HGH+ + + AK K + TH S RY D+ + + +
Sbjct: 230 HETTL---EVALEVKANEHGHSSTRQAAQLAKQANVKRFIATHLSGRYGPADLPRLLAEC 286
Query: 335 QSK 337
Q++
Sbjct: 287 QAE 289
>gi|154249577|ref|YP_001410402.1| beta-lactamase domain-containing protein [Fervidobacterium nodosum
Rt17-B1]
gi|154153513|gb|ABS60745.1| beta-lactamase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 278
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY---NLKPPTIFVPPSIKEDVEKLFE-IHRSLGNVEL 174
+F+THGH+DHI GL + +R KP T++ P K +E E + R+ ++
Sbjct: 44 IFLTHGHVDHIAGLWSIINTRNNAMGDREKPLTVYYPEGNK-GIEFYAEFLKRANNDLRF 102
Query: 175 NLDLVALDVGETYEMRND----IVVRPFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGK 228
L V + GE +R V+PF+ +H + GY + +R++LK++Y L +
Sbjct: 103 ELIFVPVKKGENVFLRKSGSFIRYVQPFQVNHTYSEVAFGYHVIDVRRRLKEEYRDLPKE 162
Query: 229 QIEKLKK--SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS 286
+I L K EIT+ + +GDT +L + D + +IL E TFL+
Sbjct: 163 EISNLAKKLGSEEITEAYEKKVLTISGDTV---LL--KKEDIMDTEILFHECTFLNR--- 214
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E + + H L +I+E K K ++L H SSRY + + +A+ K+
Sbjct: 215 -EDRKFNNHASLDDIVELVKDSNVKNLVLYHISSRY-VRGLEKAIKKIN 261
>gi|456391862|gb|EMF57220.1| hypothetical protein SBD_1381 [Streptomyces bottropensis ATCC
25435]
Length = 344
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 118/272 (43%), Gaps = 36/272 (13%)
Query: 80 GYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASR 139
G T+ G S +T +PEL+C+ D G R ++ V +TH HLDH L Y+A+R
Sbjct: 48 GLTLTGYSRANDKTFFHLPELRCSLDAGLAEGRQVET--VLLTHTHLDHSKDLD-YLAAR 104
Query: 140 G----LYNLKPPTIFVPPSIKEDVE----KLFEIHRSLGNVELNLDLVALDVGETYEM-- 189
+Y + ++ E F+ R+ L + G + +
Sbjct: 105 DAGVDIYLPAAAEPYAAAYLRASSELNHGAGFDPSRAPA-----CRLHGVRAGAEFSVGR 159
Query: 190 RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------------GKQIEKLKKSG 237
R + VR + H +P GY + LK +Y LK G+ I + +K G
Sbjct: 160 RGEYAVRVVECLHKVPCVGYCFAEKKTVLKPEYEELKASMVAAGRAAEFGRIIAERRKEG 219
Query: 238 VEITDI-ILSPEVAFTGDTTSE-FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
D I P AF GDT ++ F NP D ++ITE T+LDD + A+Q GH
Sbjct: 220 PGTVDEEIRRPAFAFLGDTHADVFARNPWLFDY---PVIITECTYLDD-GQLTRARQVGH 275
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
T SE+ + +LTHFS R+ +++
Sbjct: 276 TVWSELRPVVEAHPETLFVLTHFSLRHCDQEV 307
>gi|256081658|ref|XP_002577085.1| ribonuclease z chloroplast [Schistosoma mansoni]
gi|353232679|emb|CCD80034.1| putative ribonuclease z, chloroplast [Schistosoma mansoni]
Length = 190
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 50/216 (23%)
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNVELNLDLVALDVGETYEMRNDIVV 195
R L NL+ T F+P + V+ + + ++ + + V ++ G YE+ +D V
Sbjct: 4 RALNNLRRATYFMPKHLVPHVKAICDAFTAMSEKADSDFVGTFVPVEPGNKYELSDDCV- 62
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
GY++Y SG E+ PE+A+ GD
Sbjct: 63 ------------GYLLY-------------------SRDPSGKEV------PEIAYLGD- 84
Query: 256 TSEFML----NPRNADALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEIIENAKWIRN 310
S F + N D L +++LI EATFLD+ + IE A+ HGHTHL EI +NA +++
Sbjct: 85 -SRFTIIREANSLCPDLLSSRLLIMEATFLDNPDRKIESARSHGHTHLDEIRQNASLLKS 143
Query: 311 -KAVLLTHFSSRY-HIEDIRQAVLKLQSKVSAKVVP 344
+ L HFS RY H + IR + + ++++P
Sbjct: 144 VDYIYLIHFSDRYTHNDIIRLCHKDMPDWLVSRIIP 179
>gi|172056988|ref|YP_001813448.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
gi|254808638|sp|B1YLU8.1|RNZ_EXIS2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|171989509|gb|ACB60431.1| ribonuclease Z [Exiguobacterium sibiricum 255-15]
Length = 301
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 115/254 (45%), Gaps = 39/254 (15%)
Query: 98 PELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNLKPPT 148
P++ FD G P + + + +FITH H DHI GLP ++++R L T
Sbjct: 27 PKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGTTLLT 86
Query: 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQ 207
IF P IKE +E I + + LD++ ++ G+TYE I V + H +
Sbjct: 87 IFGPKGIKEWLEATLRITGTY--LRYPLDVIEVEAGQTYEQEGFHIHVEALE--HRFLAY 142
Query: 208 GYVIYLLRKK-------LKK-------QYIHLKGKQIEKLKKSGVEITDIILSP----EV 249
GY I +K LK+ Y +K K+ + + + TD + P ++
Sbjct: 143 GYRIEGQEEKGALHVEALKQLGVPSGPLYRQIKQKETFVFEGTEYQSTDFLGEPKPGIKL 202
Query: 250 AFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
A GDT E L A + +L+ EATF D E +HA + GH+ + E A
Sbjct: 203 AVLGDTVPCEGSLRL----AEKVDVLVHEATFADSEQ--DHAGRFGHSTARQAAEIALKA 256
Query: 309 RNKAVLLTHFSSRY 322
K +LLTH S+RY
Sbjct: 257 GVKKLLLTHISARY 270
>gi|21226408|ref|NP_632330.1| ribonuclease Z [Methanosarcina mazei Go1]
gi|452208920|ref|YP_007489034.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
gi|41017564|sp|Q8Q032.1|RNZ_METMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|20904666|gb|AAM30002.1| metal dependent hydrolases [Methanosarcina mazei Go1]
gi|452098822|gb|AGF95762.1| Ribonuclease Z [Methanosarcina mazei Tuc01]
Length = 305
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 45/251 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R T + + +F++H H DH G+P + + K P TI+ P
Sbjct: 34 FDCGEGTQQQMMRAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFLGRKEPLTIYGPEG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
KE E+ + LG L ++ V L G+ E +N VVR KT H PS GY +
Sbjct: 94 TKE----FTEVFKVLGYCNLKYEVRGVELSPGDIVEGKN-YVVRALKTEHSTPSLGYSLI 148
Query: 213 -------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K + + L G KL+K VE+ ++ PE V ++G
Sbjct: 149 ENPRPGRFNREKAVELGV-LPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSG 207
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + R+AD +LI + +F DEM+ A++ H+ E+ AK +
Sbjct: 208 DTRPCEAVLEASRDAD-----VLIHDGSFA-DEMA-GWAEESMHSTAGEVASLAKEAGVR 260
Query: 312 AVLLTHFSSRY 322
++LTH SSRY
Sbjct: 261 QLVLTHISSRY 271
>gi|374857157|dbj|BAL60010.1| ribonuclease Z [uncultured candidate division OP1 bacterium]
Length = 283
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 25/238 (10%)
Query: 101 KCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASR--GLYNL-KPPTIFVP 152
+ AFD G + + +F++HGH DHI GL + R G+ + KP TI+ P
Sbjct: 21 RLAFDAGEGISTILGNKVFAIERIFLSHGHADHITGLIGLINIRNSGMGDTEKPLTIYYP 80
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVG---ETYEMRNDIVVRPFKTHHVIP--SQ 207
+E + I ++ ++ L+ V L +G E + + + V FKT H S
Sbjct: 81 KENWRVLELISYIRKTNRRLKYPLEWVPLTIGDRVEVFSGQCNRYVEAFKTVHSDNEVSL 140
Query: 208 GYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV--EITDIILSPEVAFTGDTTSEFMLNPRN 265
GY I R +L + Y L ++I KL ++G +IT+ L V + GD+ + L+P
Sbjct: 141 GYAIVEERTRLAEPYRDLPQEEILKLVRAGQRDQITERYLKKLVCYGGDSIA---LDP-- 195
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR-NKAVLLTHFSSRY 322
AD IL+ + TFL + E + + H LSE +E A + +A++ H SSRY
Sbjct: 196 ADVAGTDILLHDCTFLTE----EEREDYKHATLSEALEVALRAQVQEALIALHISSRY 249
>gi|307353806|ref|YP_003894857.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
gi|307157039|gb|ADN36419.1| ribonuclease Z [Methanoplanus petrolearius DSM 11571]
Length = 308
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 43/240 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP V + K P ++ P + E V + I R+ N+ +
Sbjct: 55 VFITHWHADHYLGLPGLVQTMSFMGRKEPLYVYGPRWVSEFVRSVISISRN--NLGFEMI 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK---KQYIHL--------- 225
V L+ G ++ + +R F T H +PS GY++ + + ++ I L
Sbjct: 113 PVELNHG-SFVPFSGYTIRAFSTDHGMPSLGYILCEDERPGRFDREKAISLGISPGPLFG 171
Query: 226 ---KGKQIEKLKKSGVEIT----DIILSP----EVAFTGDT---TSEFMLNPRNADALRA 271
+G +E ++K G IT D++ P +V +TGDT + E+M R+ D
Sbjct: 172 RLQRGSPVE-VEKDGRTITILPSDVMGEPRPGRKVVYTGDTRPKSGEWMDWARDCD---- 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIED 326
+LI +ATF D E E A + H+ + A I K++ L H SSRY HIED
Sbjct: 227 -LLIHDATFDDSEQ--ERAMEVCHSTAGDAGRIASEISAKSLALVHISSRYVHMASHIED 283
>gi|73669295|ref|YP_305310.1| ribonuclease Z [Methanosarcina barkeri str. Fusaro]
gi|72396457|gb|AAZ70730.1| RNAse Z [Methanosarcina barkeri str. Fusaro]
Length = 305
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 33/237 (13%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHR 167
R T + + +F++H H DH G+P + + K P + P E + E+ +
Sbjct: 46 RAKTGMMNLSSIFVSHFHADHFLGIPGLIQTMSFMGRKEPLLIYGP---EGTREFTELFK 102
Query: 168 SLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQY 222
+LG LN ++ + L G+ E R + V+R KT H I S GY + + +++
Sbjct: 103 ALGYFNLNYEVQGIQLKPGDVVE-RKEYVIRALKTEHSISSLGYALIENPRPGRFNREKA 161
Query: 223 IHLK---GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT--TSEFMLNPRN 265
I L G KL+K VE+ ++ PE V ++GDT + R+
Sbjct: 162 IELGIPPGPLFSKLQKGKTVEVNGKLVKPEDVMGALRPGRTVVYSGDTRPCEPILKASRD 221
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
AD +LI + +F DEM+ + A++ H+ E+ AK + ++LTH SSRY
Sbjct: 222 AD-----VLIHDGSFA-DEMA-DWAEESKHSTAGEVAALAKEAGVRRLILTHISSRY 271
>gi|414160873|ref|ZP_11417136.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
gi|410876552|gb|EKS24450.1| ribonuclease Z [Staphylococcus simulans ACS-120-V-Sch1]
Length = 306
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 119/265 (44%), Gaps = 46/265 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTIIGPR 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + S +LN + +++ E ++ + + +H +PS GY I
Sbjct: 96 GIKSYVEMTLQASLS----KLNYPITFIEIDEQLHYHHEGFTISAYALNHGVPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLK------GKQIEKLKKSGVEI-------------TDIILSPEVAFTG 253
K LK G + +++K+ + +D I P++A G
Sbjct: 152 APTTPGKIDVAALKAIGMEPGPKYQEVKEQNTFVFNNQTYDSSQFKGSDKI-GPKIAIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT +E++L A +++ EAT++D + ++ A H H+H+S++++ +
Sbjct: 211 DTMPCKNEYLL------AEDVDVIVHEATYIDGDRTL--ADSHHHSHISDVLKLLEDSHA 262
Query: 311 KAVLLTHFSSRYHIEDIRQAVLKLQ 335
K LL H S+RY++ DI +LQ
Sbjct: 263 KQALLNHISNRYNLSDIDVLYAELQ 287
>gi|422020560|ref|ZP_16367098.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
gi|414101197|gb|EKT62798.1| ribonuclease Z [Providencia alcalifaciens Dmel2]
Length = 305
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 36/243 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGTTDPLTLYGPKGLKQYVETVLSVSDSY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G+ ++ +++V ++ H + GY I L +KL++ I +G +
Sbjct: 117 IVEIEAGKLFD-DGELIVTAYRLDHRVECYGYRIEEHPKPGALNVQKLEQDEIP-RGPWM 174
Query: 231 EKLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LKK V D + P VA GDT T E +L +NA+ +++
Sbjct: 175 QALKKGEVIELEDGRSVNGADYLGEPVAGKVVAIFGDTTPTPEALLLAKNAN-----VMV 229
Query: 276 TEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
E T E+++E A +HGH+ + + AK K + TH S RY D+ + + +
Sbjct: 230 HETTL---EVALEVKANEHGHSSTRQAAQLAKQANVKRFIATHLSGRYGPADLPRLLAEC 286
Query: 335 QSK 337
Q++
Sbjct: 287 QAE 289
>gi|397571045|gb|EJK47594.1| hypothetical protein THAOC_33677 [Thalassiosira oceanica]
Length = 862
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 78/278 (28%)
Query: 101 KCAFDIGRCP--TRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKE 157
+ AFDIG + AI +VF++HGH+DH+GGL + + + + PT FVP +
Sbjct: 45 RVAFDIGATDGFSEAIPAKYVFVSHGHVDHVGGLFAHARAHAVSCGGQAPTYFVPAQLLP 104
Query: 158 DVEKLFEIHRSL----------------GNVELNLDLVALDVGE-------TYEMRNDIV 194
+EK + SL G + ++LV+++ G+ Y +
Sbjct: 105 QIEKCRDAMSSLDAVCATSADENDGSLRGKSLIKMNLVSVEDGDEVQLKGIQYGSKTSFY 164
Query: 195 VRPFKTHHVI-PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG 253
R + H P+ GY++ K + +KG +E++ E +TG
Sbjct: 165 ARAVQVDHAGHPTLGYLV--------KSGVSIKGDPVERV--------------EFGYTG 202
Query: 254 DTTSEFMLNPRNA--------DAL-------RAKILITEATFLD---DEMSIEHAQQHGH 295
DT + ++ + A D L A++L E TFLD DE++ + A + GH
Sbjct: 203 DTCARGLVKRQAAPTEEGLCSDGLPPIDQMFSAQVLFCELTFLDSNEDELAQQKADERGH 262
Query: 296 ---THLSEIIENAKWIRNKA--------VLLTHFSSRY 322
HL I + + ++A ++ H S++Y
Sbjct: 263 LHVNHLESIFGSHDLLASRAESTGVSGSIVFYHLSAKY 300
>gi|402817053|ref|ZP_10866642.1| ribonuclease Z [Paenibacillus alvei DSM 29]
gi|402505159|gb|EJW15685.1| ribonuclease Z [Paenibacillus alvei DSM 29]
Length = 305
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 43/254 (16%)
Query: 100 LKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKED 158
L+ +G+C F+FITH H DH+ GLP ++SR + P T+F P +
Sbjct: 47 LQSPLKLGKC-------EFIFITHLHGDHLFGLPGLLSSRTYQGGVSPLTVFGPAGLHRF 99
Query: 159 VEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK-- 216
+ +F++ + ++ L + ++ G +E ++ H +PS GY I K
Sbjct: 100 IHTVFKLSET--HLPYELHIQEIESGVIWE-DEQFIITTLPLDHRVPSFGYRIQEKEKPG 156
Query: 217 ----KLKKQ--------YIHLK-GKQI-----EKLKKSGVEITDIILSPEVAFTGDTTSE 258
KL K+ Y LK G+ + E+++ S V I I VA GDT
Sbjct: 157 RLDLKLLKEKELPPGPLYGQLKRGQDVILSNGERIQASSV-IGKPIPGKSVAILGDT--- 212
Query: 259 FMLNPRNADALRAK---ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
P AK IL+ EATF++D+ E+A + GH+ + + A K + L
Sbjct: 213 ---RPCENAVTLAKDVDILVHEATFMEDKR--ENANEFGHSTARQAAQTAVSGGAKKLAL 267
Query: 316 THFSSRYHIEDIRQ 329
THFSSRY+ E + +
Sbjct: 268 THFSSRYNDERMEE 281
>gi|448735241|ref|ZP_21717458.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
gi|445798854|gb|EMA49245.1| ribonuclease Z [Halococcus salifodinae DSM 8989]
Length = 307
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 102/251 (40%), Gaps = 44/251 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P I PP
Sbjct: 33 FDCGEGTQRQMMRFSTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ VE L + L + D G +N+ VR F T H S GY +
Sbjct: 93 RSTVENLVGVT----GARLGYPIRVSDAQPGGVVLRKNEYEVRAFATDHRTQSVGYALIE 148
Query: 214 LRKKLKKQYIHLK------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTGD 254
+K + H + G + +L + VE+ D ++ PE + +TGD
Sbjct: 149 DDRKGRFDREHAEELGVPEGPKFSRLHRGETVELDDDTVIEPEQVVGPPRPGRRIVYTGD 208
Query: 255 TTSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T P A A A +L+ EATF DD E A Q GH+ + E A K
Sbjct: 209 T------RPTGATVEAATDADLLVHEATFADDRA--ERAAQTGHSTAIQAAELANRAGAK 260
Query: 312 AVLLTHFSSRY 322
+ LTH SSRY
Sbjct: 261 RLALTHISSRY 271
>gi|407476796|ref|YP_006790673.1| ribonuclease Z [Exiguobacterium antarcticum B7]
gi|407060875|gb|AFS70065.1| Ribonuclease Z [Exiguobacterium antarcticum B7]
Length = 301
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 117/256 (45%), Gaps = 43/256 (16%)
Query: 98 PELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNLKPPT 148
P++ FD G P + + + +FITH H DHI GLP ++++R L T
Sbjct: 27 PKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGTTRLT 86
Query: 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQG 208
I+ P ++E +E + + + LD++ ++ G+TY+ V H + + G
Sbjct: 87 IYGPKGLREWLEATLRVTGTY--LRYPLDIIEVEAGQTYQQEGFRVTVEALEHRFL-AYG 143
Query: 209 YVI-------YLLRKKLKKQYI-----HLKGKQIEKLKKSGVEI--TDIILSP----EVA 250
Y I LL + L++ I + + KQ GVE D + +P ++A
Sbjct: 144 YRIEGEEEKGALLVEALQELGIPSGPLYRRIKQDSMFVFDGVEYQSADFLGTPKPGVKLA 203
Query: 251 FTGDTTSEFMLNPRNADALR----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT A ++R +L+ EATF D E +HA + GH+ + E A+
Sbjct: 204 ILGDTIP-------CAGSIRLAQEVDVLVHEATFADSEE--DHAGRFGHSTARQAAEIAR 254
Query: 307 WIRNKAVLLTHFSSRY 322
+ K +LLTH S+RY
Sbjct: 255 QAQAKKLLLTHISARY 270
>gi|398817209|ref|ZP_10575840.1| ribonuclease Z [Brevibacillus sp. BC25]
gi|398031011|gb|EJL24410.1| ribonuclease Z [Brevibacillus sp. BC25]
Length = 318
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 113/255 (44%), Gaps = 43/255 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPP 153
FD G R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP
Sbjct: 35 FDCGEGTQHQLLRAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPP 94
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ + + E S +++ L++ + G YE +IVV H +PS Y +
Sbjct: 95 GLDQYFRAIMEA--SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRLAKHRVPSFAYAVME 151
Query: 214 LRK------KLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VAFTG 253
K +L KQ L G LK+ G ++T D + P+ + F+G
Sbjct: 152 KEKTGAFQVELAKQAGVLSGPLFGALKR-GEQVTLEDGRVLDGKDFVGEPQPGRKIVFSG 210
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + M AD +L+ EAT+ + + A + GH+ E + AK K
Sbjct: 211 DTEPSQAVMELAEGAD-----LLVHEATYAHHDKEL--ATRSGHSTAREAAQIAKDAGVK 263
Query: 312 AVLLTHFSSRYHIED 326
+ LTHFS RY ED
Sbjct: 264 ELCLTHFSPRYEDED 278
>gi|282165506|ref|YP_003357891.1| ribonuclease Z [Methanocella paludicola SANAE]
gi|282157820|dbj|BAI62908.1| ribonuclease Z [Methanocella paludicola SANAE]
Length = 304
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 38/243 (15%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHR 167
C + + +F+TH H DH G+P + + G P I+ P ++E +I
Sbjct: 47 CRSGFMDVGSIFLTHFHADHTLGIPGLIQTMGFQGRTEPLHIYGPKFVRE----YCDILN 102
Query: 168 SLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQY 222
SLG ++ D+VA ++ G+ E RN V F+T H +P GY + L + +++
Sbjct: 103 SLGYLKPAFDVVAHELRHGDVVE-RNGYKVEAFRTFHSVPGLGYALMEDARLGRFDRQRA 161
Query: 223 IHL------------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT--TSEFMLNPR 264
+ L +G+ +E +K S ++ +D++ P + +TGDT + F+ +
Sbjct: 162 LELGVPEGPLFGRLHRGEDVE-VKGSIIKSSDVVGEPRPGRRIVYTGDTAPSQAFLPVLK 220
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
AD + I+EATF D+ + + A + H+ ++ A + ++LTH SSRY
Sbjct: 221 GAD-----LWISEATFADE--ASDKAAETLHSSSGDVARLAATAGVQRLILTHISSRYS- 272
Query: 325 EDI 327
EDI
Sbjct: 273 EDI 275
>gi|389840199|ref|YP_006342283.1| ribonuclease Z [Cronobacter sakazakii ES15]
gi|387850675|gb|AFJ98772.1| ribonuclease Z [Cronobacter sakazakii ES15]
Length = 304
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 44/246 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALR 270
G ++LK+ G +T D + +P ++A GDT T + + R+ D
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVD--- 226
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ E T L+ M+ E A GH+ + E A+ K +L+THFSSRY ED ++
Sbjct: 227 --VMVHETT-LEAAMA-EKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSTEDCQRL 282
Query: 331 VLKLQS 336
+ + Q+
Sbjct: 283 LAECQA 288
>gi|255513710|gb|EET89975.1| ribonuclease Z [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 300
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 30/224 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ G+ V + LY P +IFVP + E L + ++ E+
Sbjct: 57 IFITHMHGDHVIGIAGLVRTLSLYKRSEPLSIFVPRGYESAAESLLKFDSAIMTYEIK-- 114
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK----KLKKQYIHLKGKQIEKL 233
++ + G Y I VR FK H IP+ GY K K K + + +KGK+ ++
Sbjct: 115 VIGIKSGVVYR-DEGIEVRAFKLVHSIPTYGYSFVEEGKLHFVKSKAESLGIKGKKFSEI 173
Query: 234 KKSG--------VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILITEAT 279
+K G +++++I PE + DT + ++ RNA+ +L+ EAT
Sbjct: 174 QKKGKIKIDGKLIKLSEITY-PEKEKKFTYASDTRPAASTVIAARNAE-----LLVHEAT 227
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+ D + A++ H+ +E + AK + K ++LTH S+RY
Sbjct: 228 YCADLERL--ARERKHSTAAEAAQVAKNAKVKKLVLTHISARYR 269
>gi|261403021|ref|YP_003247245.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
gi|261370014|gb|ACX72763.1| ribonuclease Z [Methanocaldococcus vulcanius M7]
Length = 318
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 34/242 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P K+ ++ E + N +
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSLGFFGREKELKIFGPEGTKDIIKNALEFGYNYINYPIK 116
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK--------- 226
+ + +D + + T H +PS Y+ +++KK + +K
Sbjct: 117 VYEIKEKNPAIVLKEDDYEIITYPTKHTVPSYAYIF----REIKKPRLDVKKALKLGVKV 172
Query: 227 GKQIEKLKK---------SGVEITDIILSPE----VAFTGDTT--SEFMLNPRNADALRA 271
G ++KLK+ S V D++L P+ +A++GDT +F R+ ++
Sbjct: 173 GPDLKKLKEGEAVKTENGSIVYPKDVLLPPKKGFCLAYSGDTLPLEDFGQFLRD---IKC 229
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+LI EATF D+ + A+++ HT + E + A+ K ++LTH S+RY E+ +
Sbjct: 230 DVLIHEATF--DDQCRDTARENMHTTIGEAVNIARLAHVKVLILTHISARYDKEEFFKTY 287
Query: 332 LK 333
L+
Sbjct: 288 LE 289
>gi|15921184|ref|NP_376853.1| hypothetical protein ST0948 [Sulfolobus tokodaii str. 7]
gi|41017574|sp|Q973F1.1|RNZ_SULTO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|342306331|dbj|BAK54420.1| ribonuclease Z [Sulfolobus tokodaii str. 7]
Length = 293
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 50/259 (19%)
Query: 104 FDIGR-CPTRAIQQNFVF-------ITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPS 154
FD G R ++ N F ITH H DH+ GLP + + G+Y+ K + + P
Sbjct: 33 FDCGEGTQWRMMEHNLSFMKIKLIGITHMHGDHVLGLPGMIETMGMYSRKESLLLMGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV---- 210
+KE +E +F+ N E+ + + YE N I + F+T H I SQGY+
Sbjct: 93 LKEFLEDIFKKTYFYPNFEIQ-------IIDKYEDEN-IKISTFETCHTIESQGYLFEEK 144
Query: 211 --IYLLRKKLKKQYIHLKGKQIEKLKKSG--VEITDIILSPE----------VAFTGDTT 256
+ + KL+K+ I K +I ++ K G VEI +L PE +A+TGDT
Sbjct: 145 DRLKIDIDKLRKEGI--KDWRIIRMLKEGKRVEINGKVLLPEDYLIVKKGIRIAYTGDTG 202
Query: 257 -SEFMLNP-RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
E ++N ++ D +LI ++TF+D+ + A ++GH++ + A K +
Sbjct: 203 PCEKVINAVKDVD-----LLIHDSTFIDE----KEAYKYGHSNSYDAAYVALKANVKRLA 253
Query: 315 LTHFSSRYHIEDIRQAVLK 333
L H S RY +D + ++K
Sbjct: 254 LFHISPRY--DDTYEMLIK 270
>gi|288559874|ref|YP_003423360.1| ribonuclease Z Rnz [Methanobrevibacter ruminantium M1]
gi|288542584|gb|ADC46468.1| ribonuclease Z Rnz [Methanobrevibacter ruminantium M1]
Length = 303
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 124/276 (44%), Gaps = 44/276 (15%)
Query: 104 FDIGRCPTRA-IQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I+ N +FITH H DHI GL + S GL + I+ P
Sbjct: 33 FDCGEGTQRQFIEANVSPMKVDKIFITHFHGDHILGLGGLIQSMGLRQREEDLDIYGPRG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVG---ETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+K+ + + H ++ NL++ +D G ET + R + KT H +P+ Y I
Sbjct: 93 LKKVMNAI--THTGYFKIDFNLNIHEIDEGIVVETEKYR----IETTKTKHSVPNNAYSI 146
Query: 212 YLLRKK--LKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGD 254
+K ++++ I L G KL + VEI I+ PE V ++GD
Sbjct: 147 IEKKKPRFIREKAIELGVPVGPAFGKLHRGEEVEIDGKIIKPEQVLGPPRKGLKVTYSGD 206
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T F L D + ILI EATF +++ HA +H H+ + + A+ ++
Sbjct: 207 TRPSFKLIELARD---SDILIHEATFEEEDRL--HAYEHDHSTARDAADIAREANVGKLI 261
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
LTH S RY +VL+ ++K + V + E FK
Sbjct: 262 LTHISPRYQ----EFSVLEREAKEAFDNVEVAEDFK 293
>gi|126652162|ref|ZP_01724344.1| ribonuclease Z [Bacillus sp. B14905]
gi|126591070|gb|EAZ85181.1| ribonuclease Z [Bacillus sp. B14905]
Length = 313
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ F + ++ ++ L
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPAGLQQWIEQTFSLSKT--HLTYPLH 119
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
V + G YE + V + HV+P GY I LL +K K + KG +
Sbjct: 120 FVEVQEGIVYE-DDCFTVYAKELRHVVPCYGYRIEQKDLPGELLIEKAKDLGVP-KGPLL 177
Query: 231 EKLKKSG---------VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILITE 277
+LK+ ++ D++ + FT GDT ++ A I++ E
Sbjct: 178 GQLKRGHDVVLDNGDVIQAKDVVAPAKKGFTLTILGDTK---YCEEAVQLSMGADIIVHE 234
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
ATF D + + A +GH E + A+ R + +LL H S+R+ +D+
Sbjct: 235 ATF--DGTTTDLAANYGHATNVEAAKVAQQARAQYLLLNHLSARFLPQDL 282
>gi|219114498|ref|XP_002176419.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402665|gb|EEC42655.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 357
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 113/279 (40%), Gaps = 45/279 (16%)
Query: 79 EGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ T+ G S G T +PEL C +D G T + +FITH H DH+ LP Y+
Sbjct: 19 QALTLVGRSWAGDGTSCFVPELHCLWDCGAVVTPRT-PHAIFITHTHADHVQMLP-YLLH 76
Query: 139 RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN-------------------------VE 173
R +P +++P + + H+ L +
Sbjct: 77 RATVTDQPIPLYLPAAFVSRLRDYLHAHQHLVQSGGDDDDDNDTDYTDTDTKMSYSRPLY 136
Query: 174 LNLDLVALDVGETYEM-----RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK 228
LV + G+ + R+ ++VR HH I GY + + L+ +Y +G+
Sbjct: 137 ERCTLVPVQPGDELTVRIPARRDPLLVRVVACHHRIDCVGYSCWEQQTTLRPEY---RGQ 193
Query: 229 QIEKLKK--SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRA-KILITEATFLDDEM 285
+ L+K + + P F GDTT ++A+ L+ +++ E TFLD+
Sbjct: 194 DVAALRKQMAADALFRTTRRPLFCFLGDTTHRVWT--QHAELLQQHHVIVVECTFLDN-A 250
Query: 286 SIEHAQQHGHTHLSEI--IENAKWIRNKAVLLTHFSSRY 322
++ A H H E+ I NA N +L H S RY
Sbjct: 251 TVNKAVATRHMHWKELQPIVNAH--PNVWFVLLHGSLRY 287
>gi|424798152|ref|ZP_18223694.1| Ribonuclease Z [Cronobacter sakazakii 696]
gi|423233873|emb|CCK05564.1| Ribonuclease Z [Cronobacter sakazakii 696]
Length = 304
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKSGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK 272
G ++LK+ G +T D + +P ++A GDT P+ + R
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGP----TPQAVNLARDV 225
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ T L+ M+ E A GH+ + E A+ K +L+THFSSRY E+ ++ +
Sbjct: 226 DVMVHETTLEAAMA-EKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQRLLA 284
Query: 333 KLQS 336
+ Q+
Sbjct: 285 ECQA 288
>gi|374633802|ref|ZP_09706167.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
gi|373523590|gb|EHP68510.1| ribonuclease Z [Metallosphaera yellowstonensis MK1]
Length = 292
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 44/237 (18%)
Query: 118 FVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNL 176
V ITH H DH+ GLP + + +Y K + PP IKE +E+ FE+ + + L
Sbjct: 55 LVAITHLHADHVLGLPPLIQTMSMYGRKEKLYVMGPPGIKELLEESFEL--TFFKPDFPL 112
Query: 177 DLV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQ 229
+ V L +GE I V PF+T HV+PSQGY+I L +KL+++ I+ +
Sbjct: 113 EFVDELTLGE-------IHVTPFRTCHVVPSQGYLIQERDSSNLDVEKLRREGIN--DWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILI 275
I + K G E+ L PE +A+TGDT +E + R D +L+
Sbjct: 164 IMRTLKEGKEVHWEGRTLRPEDYLIKRRGLRIAYTGDTRPCNEVIRAVRGVD-----LLL 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--IEDIRQA 330
++TF E + +A ++GH+ E E AK + + L H SSRY E ++QA
Sbjct: 219 HDSTF---EAGV-NAGEYGHSTSVEAAEVAKEAEVRRLALIHISSRYRDATELVKQA 271
>gi|222151400|ref|YP_002560556.1| hypothetical protein MCCL_1153 [Macrococcus caseolyticus JCSC5402]
gi|254808647|sp|B9E6P2.1|RNZ_MACCJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222120525|dbj|BAH17860.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 306
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 46/253 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DHI GLP + SR K T++ P +K+ V+ + I S ++ L
Sbjct: 59 IFISHLHGDHIFGLPGVLTSRSFQGGQDKKLTLYGPTGLKQFVDTVLTI--SCSHLNYPL 116
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKL----------- 218
+++ +D G+ + + NDI + H IPS GY I L+++KL
Sbjct: 117 EIIEIDHGDEFVI-NDIEITVGALKHGIPSFGYRIVMPDTAGNLIKEKLIAEGIAPGPVY 175
Query: 219 KKQYIH----LKGK--QIEKLKKSGVEITDIILSPEVAFTGDTT---SEFMLNPRNADAL 269
K+ +H L GK + K +G + ++ F GDT +E L NAD
Sbjct: 176 KEFKLHEQVTLNGKIYNTKDFKTAGKK------GKKLVFFGDTMPCENEVSL-AENAD-- 226
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+++ E T+LD ++ + H ++ H+H+ +++ K +++ H S+RY +DI +
Sbjct: 227 ---VVVHECTYLDGDVELSH--KYCHSHIDDVLSLVSSGSVKKLIINHVSNRYTTKDINR 281
Query: 330 AVLKLQSKVSAKV 342
+ ++ +K +V
Sbjct: 282 LLAEINTKTECEV 294
>gi|374602225|ref|ZP_09675219.1| Rnz [Paenibacillus dendritiformis C454]
gi|374392094|gb|EHQ63422.1| Rnz [Paenibacillus dendritiformis C454]
Length = 311
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 46/256 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R P + + F+FITH H DH+ GLP ++SR + P T+F P
Sbjct: 36 FDCGEGTQHQVLRSPLKLGKCEFIFITHLHGDHLFGLPGLLSSRAYQGGVDPLTVFGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ E +E F + + ++ L L ++ GE + + V H +PS GY + L
Sbjct: 96 LSEFMETAFRVSDT--HLPYTLHLQEIEPGEIWS-DDSFRVTALPLDHRVPSYGYRVQEL 152
Query: 215 RK--KLKKQYIH----LKGKQIEKLKKSGVEIT--------------DIILSPEVAFTGD 254
+ KL+ + + G KLK+ G ++T + I VA GD
Sbjct: 153 ARPGKLRIEVLERMGIAPGPVYGKLKR-GEDVTLPDGRRIAAAAVLGEQIPGKTVAILGD 211
Query: 255 TTSEFMLNPRNADALR----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
T +A+R A +L+ EATF++++ S +A ++GH+ ++ A
Sbjct: 212 TRP-------CENAVRLAEGADVLVHEATFMENKRS--NAHEYGHSTAADAAAIALKAGA 262
Query: 311 KAVLLTHFSSRYHIED 326
++L HFSSRY E+
Sbjct: 263 GKLVLNHFSSRYKEEE 278
>gi|150021301|ref|YP_001306655.1| beta-lactamase domain-containing protein [Thermosipho melanesiensis
BI429]
gi|149793822|gb|ABR31270.1| beta-lactamase domain protein [Thermosipho melanesiensis BI429]
Length = 279
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 25/240 (10%)
Query: 98 PELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLY---NLKPPTI 149
PE + FD G + + VF+THGH+DHI GL V +R K I
Sbjct: 19 PE-RILFDAGEAVSTLLNNKVYAIKHVFLTHGHVDHISGLWSLVNTRNNAMGDREKALNI 77
Query: 150 FVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND---IVVRPFKTHHVI-- 204
+ P + E L I + +++ L+ +++ GE +R+ V PF+ H
Sbjct: 78 YYPKGNRSIEEYLKFIKKMNSDLKFQLNTFSVEEGEKIILRDKNPRKFVIPFRVAHTYNE 137
Query: 205 PSQGYVIYLLRKKLKKQYIHLKGKQIEKL-KKSGVE-ITDIILSPEVAFTGDTTSEFMLN 262
S GY ++ RKKLKK+++ L+ ++ L K+ G + +T+ I + +GDT ++L
Sbjct: 138 KSFGYHLFEERKKLKKEFLSLEQDKLALLAKEYGSDYLTENIEKKILTISGDT---YLL- 193
Query: 263 PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ D L +IL E TF E + H L +I++ K K ++L H S RY
Sbjct: 194 -KKEDVLDTEILFHECTFFRK----EDRKYKNHAVLEDILKLVKGTSIKKLILYHISGRY 248
>gi|15669696|ref|NP_248509.1| hypothetical protein MJ_1502 [Methanocaldococcus jannaschii DSM
2661]
gi|1592137|gb|AAB99515.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 324
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 64 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 121
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 122 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 179
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDTT--SEFMLNPRNADAL 269
G ++KLK +G + +I I+ PE +A++GDT +F + L
Sbjct: 180 -GPDLKKLK-NGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 234
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+LI EATF D+ + + A+++ H+ + + + AK KA++LTH S+RY E+
Sbjct: 235 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 289
>gi|340354558|ref|ZP_08677261.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
gi|339623227|gb|EGQ27731.1| ribonuclease Z [Sporosarcina newyorkensis 2681]
Length = 315
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + P I+ P +KE ++ ++I + ELN+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFLGGEAPVDIYGPAGLKEWLQHTYQITGTHLPYELNIH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
VA G +E + V + HV+ S GY I LL + +Q + KG +
Sbjct: 119 EVA--DGLIFE-SDQFKVYAMEVQHVVKSYGYRIEQKDLPGTLLIDRAIEQGVP-KGPLL 174
Query: 231 EKLKKSGVEITDIIL-SPEVAFTGDTTSE----FMLN--------------PRNADALRA 271
++LK E DI L + E F+ D TSE F++ RNAD
Sbjct: 175 QRLK----EGQDIELDNGETVFSRDVTSERKKGFIITVIGDTSYCQSSIELARNAD---- 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
ILI EATF D+ + A++ GH+ + + + AK K +++ H S+R+
Sbjct: 227 -ILIHEATFTDE--YAKGAREFGHSTIVDAAQIAKEAHVKNLIVNHISARF 274
>gi|375147746|ref|YP_005010187.1| RNAse Z [Niastella koreensis GR20-10]
gi|361061792|gb|AEW00784.1| RNAse Z [Niastella koreensis GR20-10]
Length = 293
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 42/286 (14%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRC-------PTRAIQQNFVFITHGHLDHIGGLP 133
Y I G S T I EL+ FD G +R I+ VFI+H DH+ GL
Sbjct: 3 YNITGYSTALFSTWYFIDELRLLFDAGDGLMANLLQKSRKIEH--VFISHADRDHVTGLL 60
Query: 134 MYVASRGLYNLKP--PTIFVP------PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGE 185
+ N +P P I+ P P++ D F+ H + G V +
Sbjct: 61 QF----NQLNSRPGFPVIYYPKDSGSFPALS-DFSVKFDPHVT-GTV-----WTPISPEN 109
Query: 186 TYEMRNDIVVRPFKTHHV-----IPSQGYVIYLLRKKLKKQYIHLKGKQIEKL--KKSGV 238
+R D+ VR H I S + + + KL + + L I+++ +K
Sbjct: 110 DVPIRKDMFVRSIPNTHAAQKGGIRSLSFKVIQTKMKLNPELVKLPAADIKRIIEQKGKA 169
Query: 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFL--DDEMSIEHAQQHGHT 296
+ + ++++GDT E + N+ +ILI EATFL DDE H+
Sbjct: 170 RTHTEVQTNLISYSGDTPVEDLGRWENS-----QILIHEATFLRDDDEEKELGGHSAKHS 224
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
+L E++E + ++L HFSSRY E I +++L K + +
Sbjct: 225 YLEEVMEMVSGSNIEQLILGHFSSRYSAEQIDSRIMELCEKYAINI 270
>gi|347753276|ref|YP_004860841.1| ribonuclease Z [Bacillus coagulans 36D1]
gi|347585794|gb|AEP02061.1| Ribonuclease Z [Bacillus coagulans 36D1]
Length = 305
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++ SR P T++ P IK VE ++ + ++ L+
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGDGPLTVYGPKGIKAFVEVSLKVSET--RLKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH------ 224
++ ++ G +E + V + H I S GY I L +LKK+ I
Sbjct: 117 IIEIEEGTVFE-DDRFTVCALRLDHGIESFGYRITEKDKPGALDADRLKKEGIRPGPVYR 175
Query: 225 -LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNAD---ALRAKILI 275
LK + L+ V L P +A GDT P A+ A A +L+
Sbjct: 176 LLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDT------RPNEAEIRLAANADLLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EATF ++ S + A + H+ ++ + AK K +LLTH S+RY ED
Sbjct: 230 HEATF--NKESGQMAHDYFHSTTADAAQTAKQAGAKRLLLTHISARYGKED 278
>gi|41019477|sp|Q58897.2|RNZ_METJA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
Length = 317
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 114
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 115 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 172
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDTT--SEFMLNPRNADAL 269
G ++KLK +G + +I I+ PE +A++GDT +F + L
Sbjct: 173 -GPDLKKLK-NGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 227
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+LI EATF D+ + + A+++ H+ + + + AK KA++LTH S+RY E+
Sbjct: 228 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 282
>gi|407797337|ref|ZP_11144281.1| ribonuclease Z [Salimicrobium sp. MJ3]
gi|407018300|gb|EKE31028.1| ribonuclease Z [Salimicrobium sp. MJ3]
Length = 310
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHR 167
P +A + VFITH H DHI GLP +++SR P T++ P ++E VE I
Sbjct: 49 SPVKARRIEKVFITHLHGDHIYGLPGFLSSRSFQGGSEPLTVYGPEGLQEFVESALRI-- 106
Query: 168 SLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI-------YLLRKKLK 219
L DL + E + N+ + H +PS G+ I L ++KL+
Sbjct: 107 --SGTHLTYDLHFRTIEEGFREENEQFEISAHLLEHGLPSYGFFIKEKPKPGALQKEKLE 164
Query: 220 KQ-------YIHLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDTTSEFMLNPRNAD 267
Y +K ++ L+ V+ +D++ +P+ VA GDT R+ +
Sbjct: 165 AMGIRPGPVYQTIKNQETTILENGTVVQRSDVLSAPKPGRSVAILGDT----RFRERHME 220
Query: 268 ALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
++ A +LI E TF E + A + H+ + + E A A+ + H SSRY ED
Sbjct: 221 WIKGADVLIHEGTFEGKESRM--AYDYYHSTVVQAAETAAQSGVDALYINHLSSRYQRED 278
Query: 327 I 327
I
Sbjct: 279 I 279
>gi|288556155|ref|YP_003428090.1| ribonuclease Z [Bacillus pseudofirmus OF4]
gi|288547315|gb|ADC51198.1| ribonuclease Z [Bacillus pseudofirmus OF4]
Length = 305
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 113/253 (44%), Gaps = 40/253 (15%)
Query: 104 FDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G P + + +FITH H DHI GLP + SR L P I+ P
Sbjct: 36 FDCGEATQHQLLHSPITLTKIDRIFITHLHGDHIFGLPGLMGSRSFQGALNPLIIYGPRG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+ +E + ++ ++ +++ L+ G +E + + V +HV+PS + +
Sbjct: 96 LAPFIETSLAVSKT--HLRYPYEVIELEEGLMFETEH-LSVEALALNHVMPSFAFKLTEK 152
Query: 213 -----LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
L KKL++ Y LK GK I + + + P+ V GDT
Sbjct: 153 DKPGTLDIKKLEEYNIPKGPHYQLLKEGKTITLEDGRKINGQEFVGPPKNGRIVVIAGDT 212
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T E + R+AD ILI EATF D+ +HA Q GH+ E AK + K +
Sbjct: 213 RPTKEMIKFSRDAD-----ILIHEATFRADKA--DHAVQFGHSTTLEAASLAKEAKVKTL 265
Query: 314 LLTHFSSRYHIED 326
LLTH SSRY E+
Sbjct: 266 LLTHISSRYTGEE 278
>gi|256810849|ref|YP_003128218.1| ribonuclease Z [Methanocaldococcus fervens AG86]
gi|256794049|gb|ACV24718.1| ribonuclease Z [Methanocaldococcus fervens AG86]
Length = 314
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 40/238 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE L + +LG +
Sbjct: 54 NKIFITHLHGDHILGIPGLLQSMGFFGRNKEIEIFGPEGTKE----LIKSSLNLGFHCIE 109
Query: 176 LDLVALDVGET-----YEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYI 223
+ ++ E Y+ N +I+ P T H +PS Y+ ++K K KK +
Sbjct: 110 FPIKVYEICEKEPITIYKEENYEIIAYP--TKHSVPSYAYIFKEIKKPRLDIEKAKKLGV 167
Query: 224 HLKGKQIEKLKKSG---------VEITDIILSPE----VAFTGDTT--SEFMLNPRNADA 268
+ G ++KLK V D++L P+ +A++GDT +F + +
Sbjct: 168 RI-GPDLKKLKNGEAVKNIHGEIVRPEDVLLPPKKGFCLAYSGDTLPLEDF---GKYLEE 223
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
L +LI EATF D+++ + A+++ H+ + + + AK KA++LTH S+RY E+
Sbjct: 224 LGCDVLIHEATF--DDLAKDIAKENMHSTIGDAVSIAKLADVKALILTHISARYDKEE 279
>gi|156933135|ref|YP_001437051.1| ribonuclease Z [Cronobacter sakazakii ATCC BAA-894]
gi|417792586|ref|ZP_12439923.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449307486|ref|YP_007439842.1| ribonuclease Z [Cronobacter sakazakii SP291]
gi|166991103|sp|A7MHT9.1|RBN_ENTS8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|156531389|gb|ABU76215.1| hypothetical protein ESA_00945 [Cronobacter sakazakii ATCC BAA-894]
gi|333953322|gb|EGL71287.1| ribonuclease Z [Cronobacter sakazakii E899]
gi|449097519|gb|AGE85553.1| ribonuclease Z [Cronobacter sakazakii SP291]
Length = 304
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 44/246 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALR 270
G ++LK+ G +T D + +P ++A GDT T + + R+ D
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVD--- 226
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ E T L+ M+ E A GH+ + E A+ K +L+THFSSRY E+ ++
Sbjct: 227 --VMVHETT-LEAAMA-EKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQRL 282
Query: 331 VLKLQS 336
+ + Q+
Sbjct: 283 LAECQA 288
>gi|367027672|ref|XP_003663120.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
gi|347010389|gb|AEO57875.1| hypothetical protein MYCTH_2304593 [Myceliophthora thermophila ATCC
42464]
Length = 382
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTGDTT 256
F H +P GYV + KLK +Y L G ++ L++ GVEIT + +P AF GDTT
Sbjct: 222 FACDHTVPCLGYVFSAVTPKLKPEYRGLAGAELRALRQERGVEITAPVATPVFAFLGDTT 281
Query: 257 SEFMLN---------PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
+ + + + A +++ITE +FL +E + A + HT S++ +
Sbjct: 282 ASVLASGPEWLGGGGGSGSGAGGVRVVITECSFLWEEHR-DQADRTRHTIWSDLDPVVRR 340
Query: 308 IRNKAVLLTHFSSRYHIEDIR 328
+ +L HFS RY E++R
Sbjct: 341 SPDTVFVLIHFSLRYSDEEVR 361
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 82 TIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL 141
T+ G S T +IP+L D G ++ +F+THGH DH P +V
Sbjct: 30 TLTGRSRAAWHTSFVIPQLNLLLDAGLV-VNNLRPKHIFLTHGHSDHTLLTPAFVKRS-- 86
Query: 142 YNLKPPTIFVPPSIKEDVE 160
PP I+ P +K+ ++
Sbjct: 87 ---DPPDIYCPAEMKDALD 102
>gi|297618954|ref|YP_003707059.1| ribonuclease Z [Methanococcus voltae A3]
gi|297377931|gb|ADI36086.1| ribonuclease Z [Methanococcus voltae A3]
Length = 336
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 58/265 (21%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R + N +FI+H H DHI GL + S L N K P IF PP
Sbjct: 33 FDCGENVQRQMMSTNVSPMKINNIFISHLHGDHILGLGGLLQSMALSNRKKPLKIFGPPK 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV-----------GETYEMRNDIVVRPFKTHHV 203
I E VE + +I ++ ++++V L++ G YE + + T+H
Sbjct: 93 ITETVENILKI--GYHSISYDIEVVELELKPNKILSVNNSGNGYE------IYCYPTNHS 144
Query: 204 IPSQGYVIYLLR------KKLKKQYIHLKGKQIEKLK----------KSGVEITDIILSP 247
+PS Y+ L+ K+K I + G +++ LK ++G + I+
Sbjct: 145 VPSLAYIFKELKAPKMDMAKVKNLGIEI-GSKLKDLKDGKSVEIETFENGKSVKKTIIPQ 203
Query: 248 EV----------AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
+V A++GDT + D L K+L+ EATF D +E+A + H+
Sbjct: 204 DVLVKNTEGVSFAYSGDTRPVYAFAMFLKD-LNCKVLVHEATF--DSSLLENALETMHST 260
Query: 298 LSEIIENAKWIRNKAVLLTHFSSRY 322
E ++ ++ K +++TH S+RY
Sbjct: 261 FGEALKISEISEVKQLIITHISARY 285
>gi|194468447|ref|ZP_03074433.1| ribonuclease Z [Lactobacillus reuteri 100-23]
gi|194453300|gb|EDX42198.1| ribonuclease Z [Lactobacillus reuteri 100-23]
Length = 309
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK++ ++ D I +P+ VA GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKKVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + H + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKMAH--NYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|289191998|ref|YP_003457939.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
gi|288938448|gb|ADC69203.1| ribonuclease Z [Methanocaldococcus sp. FS406-22]
Length = 320
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 52/244 (21%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEVIENSLKLGAHY--IEFP 114
Query: 176 LDLVALDVGETYEMRN----DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
+ + + E + N +I+ P T H IPS Y+ K++KK + IE
Sbjct: 115 IKVYEIYAKEPITVYNEENYEIIAYP--TEHGIPSYAYIF----KEIKKPRL-----DIE 163
Query: 232 KLKKSGVEI-----------------------TDIILSPE----VAFTGDTT--SEFMLN 262
K KK GV+I D++L P+ +A++GDT +F
Sbjct: 164 KAKKLGVKIGPDLKKLKNGEAVKNIYGEIVKPEDVLLPPKKGFCLAYSGDTIPLEDF--- 220
Query: 263 PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ L +LI EATF D+ S + A+++ H+ + + + AK K ++LTH S+RY
Sbjct: 221 GKYLKELGCDVLIHEATF--DDFSKDIAKENMHSTIGDAVNIAKLADVKILILTHISARY 278
Query: 323 HIED 326
E+
Sbjct: 279 DKEE 282
>gi|393201123|ref|YP_006462965.1| metal-dependent hydrolase [Solibacillus silvestris StLB046]
gi|327440454|dbj|BAK16819.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Solibacillus silvestris StLB046]
Length = 313
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 32/231 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + TI+ P +++ +E+ ++ ++ ++ ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDMLTIYGPAGLQQWIEQTLQLSKT--HLTYPIE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI-------------- 223
V + G +E VR HV+P GY I +K ++ + +
Sbjct: 117 FVEVKDGIVFE-DEKFTVRALSLQHVVPCFGYRIE--QKPMQGELLIDKALALGVPKGPL 173
Query: 224 --HLKGKQIEKLKKSG-VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILIT 276
LK KL+ VE +D+ P+ FT GDT ++ N A A +++
Sbjct: 174 LGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDT--KYCENSIRL-AQNADVVVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
EATF D +IE A ++GH +E + AK + + +LL H S+R+ D+
Sbjct: 231 EATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISARFLKHDL 279
>gi|406667570|ref|ZP_11075326.1| Ribonuclease Z [Bacillus isronensis B3W22]
gi|405384623|gb|EKB44066.1| Ribonuclease Z [Bacillus isronensis B3W22]
Length = 313
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 32/231 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + TI+ P +++ +E+ ++ ++ ++ ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFLGGEDVLTIYGPAGLQQWIEQTLQLSKT--HLTYPIE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI-------------- 223
V + G +E VR HV+P GY I +K ++ + +
Sbjct: 117 FVEVKDGIVFE-DEKFTVRALSLQHVVPCFGYRIE--QKPMQGELLIDKALALGVPKGPL 173
Query: 224 --HLKGKQIEKLKKSG-VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILIT 276
LK KL+ VE +D+ P+ FT GDT ++ N A A +++
Sbjct: 174 LGQLKAGHSVKLEDGTVVESSDVTSPPQPGFTVAILGDT--KYCENSIRL-AQNADVVVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
EATF D +IE A ++GH +E + AK + + +LL H S+R+ D+
Sbjct: 231 EATF--DHSTIELAGKYGHATNTEAAKIAKEAQARHLLLNHISARFLKHDL 279
>gi|398794833|ref|ZP_10554827.1| ribonuclease Z [Pantoea sp. YR343]
gi|398207906|gb|EJM94648.1| ribonuclease Z [Pantoea sp. YR343]
Length = 303
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 114/250 (45%), Gaps = 44/250 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + + +P TI+ P I++ +E + S L V
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPKGIRQFIETALSLSGSYTSYPLEIV 117
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
E+ LV LD GE + V + +HVI GY I +L +LK +
Sbjct: 118 EIEAGLV-LDDGE-------VRVTAWPMNHVIECYGYRIEQHDKPGFLDAPRLKAEGVPR 169
Query: 222 ---YIHLK-GKQIEKLKKSGVEITDI-ILSPE-----VAFTGDTT-SEFMLNPRNADALR 270
Y LK GK+I+ + G EI L P +A GDT +E L A
Sbjct: 170 GPWYQDLKAGKRIQL--EDGREINGADYLGPATKGKVLAIFGDTAPTEVALQL----AAN 223
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A +++ E T + E A GH+ + E AK K ++ THFSSRY +D +
Sbjct: 224 ADVMVHETTL--EAALAEKANGRGHSTTIQAAEVAKQSGAKRMIATHFSSRYLSKDREKL 281
Query: 331 VLKLQSKVSA 340
+ + QS +A
Sbjct: 282 LAECQSVFTA 291
>gi|389843823|ref|YP_006345903.1| beta-lactamase superfamily metal-dependent hydrolase [Mesotoga
prima MesG1.Ag.4.2]
gi|387858569|gb|AFK06660.1| metal-dependent hydrolase, beta-lactamase superfamily III [Mesotoga
prima MesG1.Ag.4.2]
Length = 283
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 30/251 (11%)
Query: 91 HETCVIIPELKCAFDIGRCPTRAIQQNF-----VFITHGHLDHIGGLPMYVASR----GL 141
+ T ++ + FD+G + + + +F+THGH+DHI GL + +R G
Sbjct: 11 YSTWILYRPERVLFDVGEGISTVLGNSVYAIKDIFLTHGHVDHISGLWGLINTRNTAMGD 70
Query: 142 YNLKPPTIFVPPSIKEDVEKLFEIHRSLG-NVELNLDLVALDVGETYEMRNDIVVR---- 196
N + F PS +E + + + N+ L L+VG+ +R R
Sbjct: 71 RNKQLRINF--PSGNRAIEAYLDFIIGMNPRLRYNMILNPLNVGDEVYLRTAGSFRRHVT 128
Query: 197 PFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGKQIEK-LKKSGVE-ITDIILSPEVAFT 252
PFK H I S GY +Y R+KLK Y L K+I +K+ G E ITD L V +
Sbjct: 129 PFKVKHTIGEISYGYHVYEERRKLKDIYGGLPSKEIASVVKEKGREAITDTYLQKIVTIS 188
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN-K 311
GDT F L P ++ L+ E TFL + + H+ + E+I + K
Sbjct: 189 GDT---FALPPEVIS--NSETLLHECTFLVG----KDRRNQNHSSIDEVICTVRQSSGIK 239
Query: 312 AVLLTHFSSRY 322
++L H S RY
Sbjct: 240 RLILYHISGRY 250
>gi|305681289|ref|ZP_07404096.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
gi|305659494|gb|EFM48994.1| ribonuclease Z [Corynebacterium matruchotii ATCC 14266]
Length = 307
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP +++SR P TI+ PP I E V ++ S ++ L+
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLE 115
Query: 178 LVALD-VGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQ-------------- 221
+V LD GE R+D V VR H + S Y I + + Q
Sbjct: 116 VVELDHAGEVPLGRDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNAD-ALRAKILI 275
Y LK G+ I + + D + P++ GDT P +AD A A +++
Sbjct: 176 YGQLKRGEDITLDNGTVLRSADFVGPPQSGPDIVLFGDT----RFVPGHADFAAGADLMV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EAT+ + + AQ++ H+ ++ E A+ K ++LTHFS+RY ++
Sbjct: 232 HEATYGPE--YPDKAQKYFHSTTTQAAELARQAGVKKLVLTHFSARYDTDE 280
>gi|226311817|ref|YP_002771711.1| ribonuclease Z [Brevibacillus brevis NBRC 100599]
gi|254808619|sp|C0ZBP8.1|RNZ_BREBN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|226094765|dbj|BAH43207.1| ribonuclease Z [Brevibacillus brevis NBRC 100599]
Length = 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 55/261 (21%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPP 153
FD G R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP
Sbjct: 35 FDCGEGTQHQLLRAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPP 94
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ + E S +++ L++ + G YE +IVV H +PS Y +
Sbjct: 95 GLDRYFRGIMEA--SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRMAKHRVPSFAYAV-- 149
Query: 214 LRKKLKKQYIHLKGKQIEKLKKSGV-------------EIT----------DIILSPE-- 248
+ K+ + Q+E+ K++GV ++T D + P+
Sbjct: 150 MEKEKTGAF------QVERAKQAGVPSGPLFGALKRGEQVTLEDGRVLDGKDFVGEPQPG 203
Query: 249 --VAFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ F+GDT S+ +L A A +L+ EAT+ + + A + GH+ E + A
Sbjct: 204 RKIVFSGDTEPSQAVLEL----AKGADLLVHEATYAHHDKEL--ATRSGHSTAREAAQIA 257
Query: 306 KWIRNKAVLLTHFSSRYHIED 326
K K + LTHFS RY ED
Sbjct: 258 KEAGVKELCLTHFSPRYEDED 278
>gi|404418720|ref|ZP_11000487.1| ribonuclease Z [Staphylococcus arlettae CVD059]
gi|403489313|gb|EJY94891.1| ribonuclease Z [Staphylococcus arlettae CVD059]
Length = 306
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 112/256 (43%), Gaps = 42/256 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEATQHQILHHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S + L + LD Y+ N V +H I S GY I
Sbjct: 96 GIKSFVETTLALSES--RLNYTLTFIELDNHFAYQ-HNGFTVTADILNHGITSFGYRIEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKK-SGVEITDIILS-----------PEVAFTGDT 255
+ K LK G + +++K+ E D+I + P VA GDT
Sbjct: 153 PQTSGKIDVQALKSIGLEPGPKYQEVKEHETFEFEDVIYNSCDFKGAPTPGPIVAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
+E+ + AL A +++ E+T+++ + ++ A + H+H+ ++ + K
Sbjct: 213 KPCANEYQI------ALNADVMVHESTYIEGDKTL--ANNYHHSHIEDVFALMQKANVKH 264
Query: 313 VLLTHFSSRYHIEDIR 328
L+TH S+RY +E++
Sbjct: 265 SLVTHISNRYTLEEVE 280
>gi|423332828|ref|ZP_17310610.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
gi|337727946|emb|CCC03035.1| metal-dependent hydrolase [Lactobacillus reuteri ATCC 53608]
Length = 309
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ VA GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIVAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + H + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKMAH--NYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|15897910|ref|NP_342515.1| hypothetical protein SSO1043 [Sulfolobus solfataricus P2]
gi|284173568|ref|ZP_06387537.1| hypothetical protein Ssol98_02780 [Sulfolobus solfataricus 98/2]
gi|384434465|ref|YP_005643823.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
gi|41017578|sp|Q97Z88.1|RNZ_SULSO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13814227|gb|AAK41305.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261602619|gb|ACX92222.1| ribonuclease Z [Sulfolobus solfataricus 98/2]
Length = 291
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 39/242 (16%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
I+H H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ISHMHGDHVFGLLGVIASMGLLDRKETLYILGPRKLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIEKL 233
+ Y N I + FKT H I SQGY+I + +KL+K+ I + I KL
Sbjct: 117 -----DNYNDEN-ITISTFKTCHTIESQGYLIMEKDRVKIDEEKLEKEKIR-DWRVIRKL 169
Query: 234 KKSG-VEITDIILSPE----------VAFTGDTTSEFMLNPRNADALRA-KILITEATFL 281
K+ VE +L PE VA+TGDT M D+++ ILI ++TFL
Sbjct: 170 KEGKTVEYNGKLLKPEDYLVIKRGSKVAYTGDT----MPCQSVVDSVKGVDILIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
D+ A +GH+++++ + A K + LTH S RY ED+ + LK+ ++ K
Sbjct: 226 DE----PSAYTYGHSNVTDAAKIALEASVKLLALTHISPRY--EDVSEH-LKMARRIFPK 278
Query: 342 VV 343
+
Sbjct: 279 SI 280
>gi|409723418|ref|ZP_11270668.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|448722112|ref|ZP_21704651.1| ribonuclease Z [Halococcus hamelinensis 100A6]
gi|445790103|gb|EMA40773.1| ribonuclease Z [Halococcus hamelinensis 100A6]
Length = 309
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 40/255 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P T+ PP
Sbjct: 35 FDCGEGTQRQMMRFSTGFGVSHVFLTHLHGDHVLGLPGLTQTFDFNDREEPLTVHTPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
K VE L + + + + G T +D VR F+T H S GY +
Sbjct: 95 KRAVENLVGVTGARPGYPVRVHEA--HPGATVLRNDDYEVRAFETDHRTQSVGYALVEDD 152
Query: 216 KKLK---KQYIHL---KGKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDTT 256
++ + ++ + L +G + +L + VE D ++ PE + +TGDT
Sbjct: 153 RRGRFDRERAVELGVPEGPKFSRLHRGESVEAEDGTTVDPEQVVGPERPGRTLVYTGDT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
P A A A +LI EATF +D + A GH+ + E AK K +
Sbjct: 212 -----RPTGATVEAATDADLLIHEATFAEDR--TDRAGSTGHSTARQAAEIAKRADAKRL 264
Query: 314 LLTHFSSRYHIEDIR 328
LTH SSRY E R
Sbjct: 265 ALTHLSSRYAGEADR 279
>gi|217077798|ref|YP_002335516.1| metallo-beta-lactamase superfamily [Thermosipho africanus TCF52B]
gi|419760398|ref|ZP_14286677.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
gi|217037653|gb|ACJ76175.1| metallo-beta-lactamase superfamily, putative [Thermosipho africanus
TCF52B]
gi|407514501|gb|EKF49316.1| metallo-beta-lactamase superfamily protein [Thermosipho africanus
H17ap60334]
Length = 279
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-----KPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+F+THGH+DHI GL + +R N K I+ P K E L I + ++
Sbjct: 44 IFLTHGHVDHISGLWALINTRN--NAMGDREKELNIYYPIGNKGIEEYLRFIKKMNSDLR 101
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVI-----PSQGYVIYLLRKKLKKQYIHLKGK 228
NL++ L G+ +R + K V+ S GY +Y +RK+LKK++ L K
Sbjct: 102 FNLNVFPLKDGQIVYLREGNQPKYIKAFSVVHTYSEKSFGYHLYEVRKRLKKEFQSLSQK 161
Query: 229 QIEKL-KKSGVE-ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS 286
+I +L +K G + +++ + +GDT ++L + D IL E TF
Sbjct: 162 EIAELSRKYGSDYVSEKFEKKILTVSGDT---YLL--KKEDVFDTDILFHECTFFKK--- 213
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + H L +II+ K + K ++L H S RY
Sbjct: 214 -EDRKYKNHAVLEDIIDLIKDTKIKTLILYHISGRY 248
>gi|52080917|ref|YP_079708.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645126|ref|ZP_07999359.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
gi|404489801|ref|YP_006713907.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|76363374|sp|Q65HN6.1|RNZ_BACLD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|52004128|gb|AAU24070.1| RNase Z responsible for the maturation of the 3' end of tRNA
[Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348794|gb|AAU41428.1| ribonuclease Z [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392935|gb|EFV73729.1| ribonuclease Z [Bacillus sp. BT1B_CT2]
Length = 307
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
LV ++GE +D +V H IP+ GY + L + K+ G
Sbjct: 115 LVIKEIGEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+KL K+G +T D I P+ VAF+GDT N + A +A +LI
Sbjct: 175 QKL-KNGETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRP--CENVKRL-AEKADVLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EATF + E A + H+ + E A+ K ++LTH S+RY E++ + V
Sbjct: 231 EATFAKGDR--ELAGDYYHSTSEQAAETAREACAKKLILTHISARYQGENVLELV 283
>gi|20091849|ref|NP_617924.1| ribonuclease Z [Methanosarcina acetivorans C2A]
gi|41017565|sp|Q8TLK5.1|RNZ_METAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|19917040|gb|AAM06404.1| metallo-beta-lactamase [Methanosarcina acetivorans C2A]
Length = 305
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 47/272 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T + + +F++H H DH G+P + + K P + P+
Sbjct: 34 FDCGEGTQQQMMRAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFMGRKDPLMIYGPAG 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ +LF ++LG L ++ +++ G+ E VVR +T H PS GY L
Sbjct: 94 TREFTELF---KALGYFNLKYEIHGMELKPGDVVEGEG-YVVRALETEHSTPSLGYA--L 147
Query: 214 LRKKLKKQYIHLK--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
+ ++ K G KL+K VE ++ PE + ++G
Sbjct: 148 IENPRPGRFNREKAVALGVPPGPLFSKLQKGNPVEAGGKVVRPEEVMGTPRPGRTIVYSG 207
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + R+AD +LI + +F DEM+ E A++ H+ E+ AK +
Sbjct: 208 DTRPCEAVLEASRDAD-----LLIHDGSFA-DEMA-EWAEESMHSTAGEVAALAKEAGVR 260
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
++LTH SSRY +D+ + +LK KV V+
Sbjct: 261 KLVLTHISSRY-TDDV-EPILKDSKKVFENVI 290
>gi|148543891|ref|YP_001271261.1| ribonuclease Z [Lactobacillus reuteri DSM 20016]
gi|184153291|ref|YP_001841632.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227364799|ref|ZP_03848847.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|325682576|ref|ZP_08162093.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
gi|166991481|sp|A5VJA0.1|RNZ_LACRD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808644|sp|B2G6S0.1|RNZ_LACRJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|148530925|gb|ABQ82924.1| RNAse Z [Lactobacillus reuteri DSM 20016]
gi|183224635|dbj|BAG25152.1| metal-dependent hydrolase [Lactobacillus reuteri JCM 1112]
gi|227070143|gb|EEI08518.1| ribonuclease Z [Lactobacillus reuteri MM2-3]
gi|324978415|gb|EGC15365.1| ribonuclease Z [Lactobacillus reuteri MM4-1A]
Length = 309
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + H + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKMAH--NYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|308188524|ref|YP_003932655.1| ribonuclease Z [Pantoea vagans C9-1]
gi|308059034|gb|ADO11206.1| ribonuclease Z [Pantoea vagans C9-1]
Length = 303
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 117/252 (46%), Gaps = 39/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + LN+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPRGLKTFVETALSISGSYTDYPLNI- 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
V ++ G T + + + + H + GY I L ++LK + + +G
Sbjct: 117 -VEIEAGWTLD-DGEFRISAWPLSHPVECFGYRIEQHDKPGLLDAERLKAEGVP-RGPWF 173
Query: 231 EKLKKS---GVEITDII-----LSP-----EVAFTGDTT-SEFMLNPRNADALRAKI-LI 275
++LK+ +E +I L P ++A GDT +E L L A++ L+
Sbjct: 174 QQLKQGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTEVALQ------LAAEVDLM 227
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
T L+ M +E A GH+ + E AK K ++ THFSSRY +D+ + + + Q
Sbjct: 228 VHETTLEAAM-VEKANGRGHSTTLQAAEVAKRAGAKRMIATHFSSRYLAKDMSRLLAECQ 286
Query: 336 SKVSAKVVPLTE 347
+ + P TE
Sbjct: 287 T-----IFPRTE 293
>gi|408356557|ref|YP_006845088.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
gi|407727328|dbj|BAM47326.1| ribonuclease Z [Amphibacillus xylanus NBRC 15112]
Length = 311
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 32/231 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P TI+ P I++ +E I ++ +LN
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQEGISPLTIYGPKGIRDYIEMSLSISQTKLGYQLNF- 117
Query: 178 LVALDVGETYE-MRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
++V ++ + ND + K H + S GY I L KLK Y
Sbjct: 118 ---VEVYHGFQFVENDYTIDVIKLDHGVDSFGYRIIEADQIGELQVDKLKSLGIKPGPIY 174
Query: 223 IHLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDTTSEFMLNPRNADAL-RAKILIT 276
+K ++ +L + D++ S + +A GDT +N D + +LI
Sbjct: 175 QQIKSNEVTQLPNGELIYRQDVVGSNKKGRKIAIFGDTRYPL----KNVDFIYNCDLLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
EATF ++ ++ A Q+ H+ ++ E AK + K ++LTH S+RY D+
Sbjct: 231 EATFHGEDQNL--ADQYYHSSNVQVAELAKQAQVKQLILTHISARYQEHDL 279
>gi|169828892|ref|YP_001699050.1| ribonuclease Z [Lysinibacillus sphaericus C3-41]
gi|168993380|gb|ACA40920.1| Ribonuclease Z [Lysinibacillus sphaericus C3-41]
Length = 313
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ F + ++ ++ L
Sbjct: 62 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPVGLQQWIEQTFALSKT--HLTYPLH 119
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
V + G YE V + HV+P GY I LL +K K + KG +
Sbjct: 120 FVEVQEGIVYE-DACFTVYAKELRHVVPCYGYRIEQKDLPGELLIEKAKDLGVP-KGPLL 177
Query: 231 EKLKKSG---------VEITDIILSPEVAFT----GDTTSEFMLNPRNADALRAKILITE 277
+LK+ ++ D++ S + FT GDT ++ A I++ E
Sbjct: 178 GQLKRGHDVVLENGDVIQAKDVVASAKKGFTLTILGDTK---YCEEAVQLSMGADIIVHE 234
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
ATF D + + A +GH E + A+ + +LL H S+R+ +D+
Sbjct: 235 ATF--DGTTTDLAANYGHATNVEAAKVAQQAGAQYLLLNHLSARFLPQDL 282
>gi|417654474|ref|ZP_12304193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|417797458|ref|ZP_12444654.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
gi|329730860|gb|EGG67238.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21193]
gi|334266950|gb|EGL85420.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21305]
Length = 306
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 44/258 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T ++E +++ RNAD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNEHVIS-RNAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVK 263
Query: 312 AVLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 264 RTLITHLSNRYNTEDINE 281
>gi|389820613|ref|ZP_10209827.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
gi|388462812|gb|EIM05203.1| ribonuclease Z [Planococcus antarcticus DSM 14505]
Length = 314
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 106/231 (45%), Gaps = 34/231 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP + SR P I+ P IKE VE R+ L
Sbjct: 59 IFISHMHGDHIFGLPGLLGSRSFQGGDEPLEIYGPSGIKEFVEMTLTFSRT----HLTYR 114
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHL---KGKQI 230
+V ++ E ++++ V +HVIPS G+ I L K + + + L KG +
Sbjct: 115 IVYHELTEGVLFEDELMTVETRLLNHVIPSYGFRIIQKPLPPKLMVNKALALGVPKGPLL 174
Query: 231 EKLKKSG-VEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KLK G VEITD + PE V GDT + R AD +L+
Sbjct: 175 AKLKNGGDVEITDGRWVRSGDVTEPEEPGFIVTILGDTRYCEAAVELGRGAD-----VLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EATF D S + A ++GH+ + + E A+ ++L H S+R+ ED
Sbjct: 230 HEATF--DGTSKKMAGEYGHSTVYDAAETARLAGAATLILNHISARFLPED 278
>gi|423682887|ref|ZP_17657726.1| ribonuclease Z [Bacillus licheniformis WX-02]
gi|383439661|gb|EID47436.1| ribonuclease Z [Bacillus licheniformis WX-02]
Length = 307
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 28/233 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ S +V L
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV--SGTHVTYPLV 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H IP+ GY + L + KQ G +
Sbjct: 117 IKEIEEGTVFE-DDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKQTGVSPGPVYQ 175
Query: 232 KLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
KLK + G +I D I P+ VAF+GDT N + A +A +LI EA
Sbjct: 176 KLKNGETVTLEDGRKIRGADFIGPPKKGRIVAFSGDTRP--CENVKKL-AEKADVLIHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
TF + E A+ + H+ + E A+ K ++LTH S+RY E++ + V
Sbjct: 233 TFAKGDR--ELARDYYHSTSEQAAETARESCAKELILTHISARYQGENVLELV 283
>gi|429087438|ref|ZP_19150170.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
gi|426507241|emb|CCK15282.1| Ribonuclease Z [Cronobacter universalis NCTC 9529]
Length = 304
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 34/256 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ G+ ++ ++ V F H + GY I K LK G +
Sbjct: 119 EIT--EGQLFD-DGELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVAPGPLFQ 175
Query: 232 KLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILIT 276
+LK+ + TD + +P ++A GDT TS+ + R+ D ++I
Sbjct: 176 QLKRGETVTLPDGRTLRGTDYLSAPRPGKKIAIFGDTGPTSQAVNLARDVD-----VMIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E T L+ M+ E A GH+ + A+ K +L+THFSSRY D ++ + + Q+
Sbjct: 231 ETT-LEAAMA-EKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYDASDCQRLLAECQA 288
Query: 337 KVSAKVVPLTEGFKSV 352
A L E F ++
Sbjct: 289 VFPAS--ELAEDFLTI 302
>gi|347549375|ref|YP_004855703.1| hypothetical protein LIV_1958 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982446|emb|CBW86444.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 306
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 36/253 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R + + F+FITH H DHI GLP ++SR TI+ PP I+E +E
Sbjct: 48 RSQIKLSKLEFIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGIREYIETSLR-- 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
L L ++ ++G +++ + + H + S GY I K+ L
Sbjct: 106 --LSGTRLTYKIIFAEIGPGVIFEDEMFAITADELEHGMQSFGYRIVEKDKQGALNAAKL 163
Query: 226 KGKQIE------KLKKS-------GVEIT--DIILSPE----VAFTGD---TTSEFMLNP 263
K +E KLK G EI + I +P+ ++ GD T SEF L
Sbjct: 164 KADGVEPGPVFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRL-A 222
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
NAD +L+ EATF D+ + A ++ H+ + E AK K ++LTH SSRY
Sbjct: 223 ENAD-----VLVHEATFEGDKGKM--AAEYMHSTTVQAAELAKRAGVKKLILTHISSRYD 275
Query: 324 IEDIRQAVLKLQS 336
E + +++ +S
Sbjct: 276 REASKSLLIEAKS 288
>gi|448730275|ref|ZP_21712583.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
gi|445793443|gb|EMA44015.1| ribonuclease Z [Halococcus saccharolyticus DSM 5350]
Length = 305
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF+TH H DH+ GLP + + + P I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFTVSHVFLTHLHGDHVLGLPGLCQTLDFNDREEPLAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ VE L + + + ++ + G ++ +R F T H S GY +
Sbjct: 93 RSTVENLVGVTGARPGYPVRVNEAS--PGGVVLREDEYEIRAFATDHRTQSVGYALVEDD 150
Query: 216 KKLKKQYIHLK------GKQIEKL-KKSGVEITD-IILSPE-----------VAFTGDTT 256
+K + H + G + +L + VE+ D ++ PE V +TGDT
Sbjct: 151 RKGRFDREHAEELGVPEGPKFSRLHEGETVELEDGTVVEPEQVVGPPRPGRKVVYTGDTR 210
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
DA +LI EATF DD E A Q GH+ + E A K + LT
Sbjct: 211 PTGTTVEAATDA---DLLIHEATFTDDRA--ERAAQTGHSTSIQAAELANRAGAKRLALT 265
Query: 317 HFSSRY 322
H SSRY
Sbjct: 266 HISSRY 271
>gi|385781789|ref|YP_005757960.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|418574528|ref|ZP_13138697.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
gi|364522778|gb|AEW65528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 11819-97]
gi|371979255|gb|EHO96490.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21333]
Length = 306
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 113/258 (43%), Gaps = 44/258 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T ++E +++ RNAD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNEHVIS-RNAD-----LMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVK 263
Query: 312 AVLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 264 RTLITHLSNRYNTEDINE 281
>gi|338997225|ref|ZP_08635926.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
gi|338765822|gb|EGP20753.1| metallo-beta-lactamase family protein [Halomonas sp. TD01]
Length = 320
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 35/238 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS + K P TI P SIK +E E+ + + L+
Sbjct: 58 ILITHVHGDHCYGLPGILASAAMGGRKAPLTIVAPASIKTWLEATCEVTQLC--LPFALE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGY------------VIYLLRKKLKKQYIHL 225
+A D + E N I V F H + S Y V L +K + + +
Sbjct: 116 FIASDDLPSVEFEN-IAVETFSLSHRVASYAYAFTERKVDAVLDVAKLAQKGIPRGPLWG 174
Query: 226 KGKQIEKLKKSGVEIT--DIIL---SP-EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
+ KQ ++ +G + D ++ +P +V GD +LN A+ A++L+ EAT
Sbjct: 175 QLKQGFDIEFAGERLKSHDYLIFKNTPRKVVIAGDNDQPDLLNEACAE---AQVLVHEAT 231
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQ 329
+ +EM+ + A GH++ + A+ I+ +++LTHFS RY IEDIR+
Sbjct: 232 Y-TEEMA-QKAGDVGHSYAKLVAAFAESIKLPSLVLTHFSPRYQFSSHASPSIEDIRK 287
>gi|336114307|ref|YP_004569074.1| ribonuclease Z [Bacillus coagulans 2-6]
gi|335367737|gb|AEH53688.1| ribonuclease Z [Bacillus coagulans 2-6]
Length = 305
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++ SR P T++ P K VE ++ + +++ L+
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFQGGNGPLTVYGPKGTKAFVEVSLKVSET--HLKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH------ 224
++ ++ G +E + +V + H I S GY I L +LKK+ I
Sbjct: 117 IIEIEEGTVFE-DDRFMVCALRLDHGIESFGYRIAEKDKPGALDADQLKKEGIRPGPVYR 175
Query: 225 -LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNAD---ALRAKILI 275
LK + L+ V L P +A GDT P A A A +LI
Sbjct: 176 LLKEGRTVTLEDGRVISGKDYLGPAKKGKIIAILGDT------RPNEAAIRLAANADLLI 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EATF ++ S + A + H+ ++ + AK K +LLTH S+RY ED
Sbjct: 230 HEATF--NKESGQMAHDYFHSTTADAAQTAKQAGAKRLLLTHISARYGKED 278
>gi|62859611|ref|NP_001017028.1| elaC homolog 1 [Xenopus (Silurana) tropicalis]
gi|89269091|emb|CAJ81938.1| elac1 (prov) [Xenopus (Silurana) tropicalis]
Length = 363
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 126/326 (38%), Gaps = 81/326 (24%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-----IF 150
FD G R P +A + +FITH H DH+ GLP ++ + L P+ I+
Sbjct: 35 FDCGEGTQTQFMRSPLKAGRITKIFITHLHGDHMFGLPGFLCTVSLQCGCTPSKQLVDIY 94
Query: 151 VPPSIKEDVEKLFEIHRS----------------------------------LGNVELNL 176
P ++E V++ EI S L E
Sbjct: 95 GPVGLREFVQRSLEISHSQLVFPYVVHELVPSPDQCPAEEFKDFSSRGGESCLATEEQGR 154
Query: 177 DLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKG 227
+ A +YE+ D V+ FK H IPS G+VI L +KLK+ I G
Sbjct: 155 TIYASPEDGSYELIADEQFTVKAFKLFHRIPSFGFVIEERERPGKLNMQKLKELGIQ-PG 213
Query: 228 KQIEKLKKSG---------VEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAKIL 274
KLK V +D++ P +V GD + + A +L
Sbjct: 214 PVCGKLKLGATITLDNGQKVSPSDVLGDPIPGRKVCILGDCSGVIAVGGAKL-CCDADVL 272
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IED 326
I EAT D +M + A++HGH+ + A + ++LTHFS RY ED
Sbjct: 273 IHEATLDDSQM--DKAKEHGHSTPKMAADFANLCCARKLVLTHFSQRYKPPGLVTEGDED 330
Query: 327 IRQAVLKLQSKVSAKVVPLTEGFKSV 352
+ + +S + + V L E F ++
Sbjct: 331 VTVLKQQAESALPGQHVTLAEDFMTI 356
>gi|389644470|ref|XP_003719867.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|351639636|gb|EHA47500.1| hypothetical protein MGG_17714 [Magnaporthe oryzae 70-15]
gi|440470028|gb|ELQ39117.1| hypothetical protein OOU_Y34scaffold00514g34 [Magnaporthe oryzae
Y34]
gi|440489500|gb|ELQ69147.1| hypothetical protein OOW_P131scaffold00186g4 [Magnaporthe oryzae
P131]
Length = 381
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 167 RSLGNVELNLDLV-ALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
R G L+ ++ L GET +R F H +P GYV L ++L+ +Y
Sbjct: 184 RPKGRTSLDTHVIHGLTDGETIPLRRAQTFTATAFACDHTVPCLGYVFGLNSRRLRPEYR 243
Query: 224 HLKGKQIEKLKKS-GVE-ITDIILSPEVAFTGDTTSEFM-LNPRNADALRAKI--LITEA 278
L G ++++L+++ G E IT L+P AF GDTT+ + + P D L+ I +ITE
Sbjct: 244 DLPGAKLKELRQAQGAEAITAPHLTPLFAFLGDTTAATLSVGP---DWLQDGIPVVITEC 300
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
+FL +E + A++ HT +++ + + +L HFS RY + +R+ +L
Sbjct: 301 SFLFEEHRAQ-AEKTKHTLWADLEPVVRRFPHTTFVLVHFSMRYSEDSVRRFFAELPDP- 358
Query: 339 SAKVVPLTEG 348
A +V +G
Sbjct: 359 PANIVVWADG 368
>gi|57641049|ref|YP_183527.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
gi|73917868|sp|Q5JE70.1|RNZ_PYRKO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57159373|dbj|BAD85303.1| ribonuclease Z [Thermococcus kodakarensis KOD1]
Length = 314
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P + + L++ KP I+ P + V+ L + G D
Sbjct: 57 IFITHFHGDHYLGIPALIQTMNLWDRQKPLHIYGPKYTFQFVQNLL----NSGFFRPGFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L++KL ++Y +G +
Sbjct: 113 IHVHELGETRLKFGDYEIWSFKVEHGIPALGYVFKEKDRRGKFLKEKL-REYGLEEGPIL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E I+ E + +TGDT P L RA +LI
Sbjct: 172 GKLEREGKIEWNGRIIRLEDVTGPRRKGLKIVYTGDT------EPCERVKLFSERADLLI 225
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EAT+L+ + + H+ + E + A+ + K + L H + RY ED + LK+
Sbjct: 226 HEATYLN---PGDRGDSY-HSTVEEACDTARRAKVKLLALFHRAFRYSYEDYVEEALKIC 281
Query: 336 SKVSAKVV 343
+ + V
Sbjct: 282 ESLGVRAV 289
>gi|15614276|ref|NP_242579.1| hypothetical protein BH1713 [Bacillus halodurans C-125]
gi|41017582|sp|Q9KC61.1|RNZ_BACHD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|10174330|dbj|BAB05432.1| BH1713 [Bacillus halodurans C-125]
Length = 309
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P ++ P I+ VE ++ + EL ++
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGENPLFLYGPKGIRSFVETALQVSNTHVKYELTIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ + G + V HV+P + + LL +LK + +
Sbjct: 119 EFS-EPGLLFH-EEGFKVETILLDHVMPCYAFKVTEDDRPGELLVDRLKAKGVPPGPLYR 176
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+G+ +E +E + P+ GDT L P A +LI EA
Sbjct: 177 KIQQGETVELPTGERLEANAFLGPPKRGRSFVLAGDTRPVKELIPF---AKNVNVLIHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TFLDD+ HA ++GH+ +++ I+ AK ++LTH SSRYH
Sbjct: 234 TFLDDKKG--HAHEYGHSTMADAIQLAKQANVDHLILTHISSRYH 276
>gi|296241882|ref|YP_003649369.1| RNAse Z [Thermosphaera aggregans DSM 11486]
gi|296094466|gb|ADG90417.1| RNAse Z [Thermosphaera aggregans DSM 11486]
Length = 250
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 99/230 (43%), Gaps = 52/230 (22%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
D+G C +R ++ VFITH H DH GL + + L N K + P
Sbjct: 34 LDVGEGCQSRMLKTGLSPLKVKTVFITHLHGDHYLGLFGLLQTMHLSNRKEALNVMAPKE 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +EK E+ L N++ L+ + +D G Y + I V P+ H IP+ G+++
Sbjct: 94 LFALIEKYMELR--LMNIDFQLNFIDIDEGREY-IDEKITVIPYPVAHTIPAHGFLV--- 147
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAK 272
K+G ++ +++TGDT ++ + RNAD
Sbjct: 148 --------------------KAGRQV--------ISYTGDTGPSANTIEYSRNAD----- 174
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
ILI EATF E A + GH+ + A K ++LTH S+RY
Sbjct: 175 ILIHEATF--TSAMKEEAHEQGHSTSGDAAMIASRAGVKLLVLTHISARY 222
>gi|23099311|ref|NP_692777.1| hypothetical protein OB1856 [Oceanobacillus iheyensis HTE831]
gi|41017560|sp|Q8EQ58.1|RNZ_OCEIH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|22777540|dbj|BAC13812.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 306
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP +++SR + +P I+ P IKE VE + ++ + +
Sbjct: 59 IFITHLHGDHIYGLPGFLSSRSFQSGENQPLCIYGPIGIKEFVESTLRLSQTNLTYPITI 118
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QY 222
+ D G +E N+++V K H I S GY I LL KLK+ Y
Sbjct: 119 KEITED-GNLFET-NEMMVETKKLQHGIDSYGYRIKEKDKPGELLVDKLKQIGIAPGPIY 176
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RNADALRAKILI 275
+K +I L + + +L P ++ GDT P + +D IL+
Sbjct: 177 QQIKENEITTLDNGSIIYRNDVLGPAKKGKVISILGDTRYSIDHIPFIKFSD-----ILV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E+TF D+ + A ++ H+ + + AK + LTH SSRY EDI
Sbjct: 232 HESTFTQDKELL--AFEYNHSTNVQAAKLAKEANINKLYLTHVSSRYQAEDI 281
>gi|227544989|ref|ZP_03975038.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|338204259|ref|YP_004650404.1| ribonuclease Z [Lactobacillus reuteri SD2112]
gi|133930541|gb|ABO43841.1| metal-dependent hydrolase [Lactobacillus reuteri]
gi|227185032|gb|EEI65103.1| ribonuclease Z [Lactobacillus reuteri CF48-3A]
gi|336449499|gb|AEI58114.1| ribonuclease Z [Lactobacillus reuteri SD2112]
Length = 309
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPIGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + A + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKM--AYNYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>gi|448494708|ref|ZP_21609523.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
gi|445688931|gb|ELZ41177.1| ribonuclease Z [Halorubrum californiensis DSM 19288]
Length = 309
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 107/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P + + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRSGTGFGVDRVFVSHLHGDHVLGIPGLIQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + ++ GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLRDL--VHAVGHDPAFPVRIEPVEPGEVAYETDEYEVRAFETEHRTVSQGYVLAEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E + VE ++ P ++A+T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLAYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVEAAENADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|253733248|ref|ZP_04867413.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|386831116|ref|YP_006237770.1| hypothetical protein SAEMRSA15_14260 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798930|ref|ZP_12446084.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|417897979|ref|ZP_12541905.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|417901911|ref|ZP_12545787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|418313243|ref|ZP_12924737.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|418600026|ref|ZP_13163500.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|418645177|ref|ZP_13207305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|418656714|ref|ZP_13218513.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|421150523|ref|ZP_15610179.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639944|ref|ZP_21123944.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|448743020|ref|ZP_21724934.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
gi|253728788|gb|EES97517.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH130]
gi|334275092|gb|EGL93393.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21310]
gi|341845750|gb|EGS86952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21266]
gi|341849481|gb|EGS90624.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21259]
gi|365236514|gb|EHM77403.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21334]
gi|374395615|gb|EHQ66878.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21343]
gi|375024010|gb|EHS17455.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-55]
gi|375032877|gb|EHS26096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-105]
gi|385196508|emb|CCG16137.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|394329913|gb|EJE56015.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443406219|gb|ELS64803.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21196]
gi|445563707|gb|ELY19864.1| ribonuclease Z [Staphylococcus aureus KT/Y21]
Length = 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|15924494|ref|NP_372028.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus Mu50]
gi|15927085|ref|NP_374618.1| hypothetical protein SA1335 [Staphylococcus aureus subsp. aureus
N315]
gi|148267988|ref|YP_001246931.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH9]
gi|150394053|ref|YP_001316728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156979823|ref|YP_001442082.1| hypothetical protein SAHV_1492 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253314872|ref|ZP_04838085.1| hypothetical protein SauraC_01605 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006290|ref|ZP_05144891.2| hypothetical protein SauraM_07475 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793581|ref|ZP_05642560.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|258411119|ref|ZP_05681399.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|258419917|ref|ZP_05682878.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|258437335|ref|ZP_05689319.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|258443540|ref|ZP_05691879.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|258446747|ref|ZP_05694901.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|258448662|ref|ZP_05696774.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|258454278|ref|ZP_05702248.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|269203131|ref|YP_003282400.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282893003|ref|ZP_06301237.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|282928974|ref|ZP_06336561.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|295406624|ref|ZP_06816429.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|296276346|ref|ZP_06858853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MR1]
gi|297245792|ref|ZP_06929657.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|384864726|ref|YP_005750085.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387150646|ref|YP_005742210.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|415692617|ref|ZP_11454537.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417651188|ref|ZP_12300951.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|417801339|ref|ZP_12448434.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|417894562|ref|ZP_12538577.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|418424653|ref|ZP_12997767.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|418427647|ref|ZP_13000652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|418430489|ref|ZP_13003400.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433632|ref|ZP_13006224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|418437127|ref|ZP_13008923.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|418440027|ref|ZP_13011728.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|418443045|ref|ZP_13014644.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|418446107|ref|ZP_13017581.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|418449121|ref|ZP_13020507.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451934|ref|ZP_13023268.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454927|ref|ZP_13026186.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457805|ref|ZP_13029004.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418567174|ref|ZP_13131539.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|418640284|ref|ZP_13202516.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|418652910|ref|ZP_13214873.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|418662133|ref|ZP_13223687.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|418878420|ref|ZP_13432655.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|418881185|ref|ZP_13435402.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|418884036|ref|ZP_13438229.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886769|ref|ZP_13440917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|418895265|ref|ZP_13449360.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|418914603|ref|ZP_13468575.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920586|ref|ZP_13474518.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931808|ref|ZP_13485643.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991432|ref|ZP_13539093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|419784652|ref|ZP_14310415.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|424769036|ref|ZP_18196273.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|443635588|ref|ZP_21119716.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
gi|41017526|sp|P60196.1|RNZ_STAAM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|41017527|sp|P60197.1|RNZ_STAAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991504|sp|A7X2M2.1|RNZ_STAA1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043791|sp|A6U1X3.1|RNZ_STAA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043792|sp|A5IT32.1|RNZ_STAA9 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|13701303|dbj|BAB42597.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247275|dbj|BAB57666.1| similar to metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus
aureus subsp. aureus Mu50]
gi|147741057|gb|ABQ49355.1| RNAse Z [Staphylococcus aureus subsp. aureus JH9]
gi|149946505|gb|ABR52441.1| ribonuclease Z [Staphylococcus aureus subsp. aureus JH1]
gi|156721958|dbj|BAF78375.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787553|gb|EEV25893.1| ribonuclease Z [Staphylococcus aureus A9781]
gi|257840269|gb|EEV64733.1| ribonuclease Z [Staphylococcus aureus A9763]
gi|257844102|gb|EEV68490.1| ribonuclease Z [Staphylococcus aureus A9719]
gi|257848540|gb|EEV72528.1| ribonuclease Z [Staphylococcus aureus A9299]
gi|257850946|gb|EEV74889.1| ribonuclease Z [Staphylococcus aureus A8115]
gi|257854322|gb|EEV77271.1| ribonuclease Z [Staphylococcus aureus A6300]
gi|257857940|gb|EEV80829.1| ribonuclease Z [Staphylococcus aureus A6224]
gi|257863557|gb|EEV86315.1| ribonuclease Z [Staphylococcus aureus A5937]
gi|262075421|gb|ACY11394.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282589381|gb|EFB94472.1| ribonuclease Z [Staphylococcus aureus A10102]
gi|282764321|gb|EFC04447.1| ribonuclease Z [Staphylococcus aureus A8117]
gi|285817185|gb|ADC37672.1| Ribonuclease Z [Staphylococcus aureus 04-02981]
gi|294968371|gb|EFG44395.1| ribonuclease Z [Staphylococcus aureus A8819]
gi|297177443|gb|EFH36695.1| ribonuclease Z [Staphylococcus aureus A8796]
gi|312829893|emb|CBX34735.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129777|gb|EFT85767.1| hypothetical protein CGSSa03_01788 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329727372|gb|EGG63828.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21172]
gi|334276961|gb|EGL95201.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21318]
gi|341851856|gb|EGS92760.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21201]
gi|371982878|gb|EHP00027.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21272]
gi|375014848|gb|EHS08519.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-3]
gi|375021078|gb|EHS14585.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-99]
gi|375037078|gb|EHS30132.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-122]
gi|377694542|gb|EHT18907.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1165]
gi|377695071|gb|EHT19435.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1057]
gi|377712986|gb|EHT37199.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714371|gb|EHT38572.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1769]
gi|377723554|gb|EHT47679.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725722|gb|EHT49835.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1150]
gi|377730928|gb|EHT54986.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1213]
gi|377758105|gb|EHT81993.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377764312|gb|EHT88165.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC348]
gi|383363862|gb|EID41188.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-M]
gi|387717935|gb|EIK05930.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS2]
gi|387718229|gb|EIK06213.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS3a]
gi|387719432|gb|EIK07377.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS1]
gi|387724856|gb|EIK12487.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS4]
gi|387727115|gb|EIK14647.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730177|gb|EIK17584.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735245|gb|EIK22374.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS8]
gi|387736721|gb|EIK23809.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VRS7]
gi|387736884|gb|EIK23970.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744815|gb|EIK31579.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS10]
gi|387744980|gb|EIK31742.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387746573|gb|EIK33302.1| AtsA/ElaC family protein ribonuclease Z [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348427|gb|EJU83419.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CM05]
gi|408423641|emb|CCJ11052.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408425631|emb|CCJ13018.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408427618|emb|CCJ14981.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408429607|emb|CCJ26772.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408431594|emb|CCJ18909.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408433588|emb|CCJ20873.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408435580|emb|CCJ22840.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|408437564|emb|CCJ24807.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus ST228]
gi|443409229|gb|ELS67727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21236]
Length = 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|57650460|ref|YP_186389.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87159998|ref|YP_494149.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195309|ref|YP_500113.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151221623|ref|YP_001332445.1| hypothetical protein NWMN_1411 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509732|ref|YP_001575391.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140075|ref|ZP_03564568.1| ribonuclease Z [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253732147|ref|ZP_04866312.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|258451162|ref|ZP_05699197.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|262049091|ref|ZP_06021968.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|262051174|ref|ZP_06023398.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|282924753|ref|ZP_06332420.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|284024564|ref|ZP_06378962.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 132]
gi|294848534|ref|ZP_06789280.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|304380909|ref|ZP_07363569.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014713|ref|YP_005290949.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|384550327|ref|YP_005739579.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|384862106|ref|YP_005744826.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384870047|ref|YP_005752761.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|387143113|ref|YP_005731506.1| hypothetical protein SATW20_15020 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686312|ref|ZP_11450449.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|417649964|ref|ZP_12299747.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|418277317|ref|ZP_12891904.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|418285027|ref|ZP_12897727.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|418316388|ref|ZP_12927826.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|418319468|ref|ZP_12930848.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|418569487|ref|ZP_13133813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|418579431|ref|ZP_13143526.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|418641709|ref|ZP_13203914.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|418648724|ref|ZP_13210762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|418650598|ref|ZP_13212616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|418658987|ref|ZP_13220682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|418871275|ref|ZP_13425656.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|418903812|ref|ZP_13457853.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906450|ref|ZP_13460476.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418912116|ref|ZP_13466097.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|418925766|ref|ZP_13479668.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928856|ref|ZP_13482742.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|418948563|ref|ZP_13500859.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|418955673|ref|ZP_13507610.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|419773376|ref|ZP_14299384.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|422742712|ref|ZP_16796715.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|422746204|ref|ZP_16800137.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|424785340|ref|ZP_18212143.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|440707357|ref|ZP_20888056.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
gi|440734956|ref|ZP_20914567.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|76363381|sp|Q5HFR8.1|RNZ_STAAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|122539452|sp|Q2FY67.1|RNZ_STAA8 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123485735|sp|Q2FGM9.1|RNZ_STAA3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|172048896|sp|A6QH51.1|RNZ_STAAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|189043793|sp|A8Z2D7.1|RNZ_STAAT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57284646|gb|AAW36740.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus COL]
gi|87125972|gb|ABD20486.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87202867|gb|ABD30677.1| AtsA/ElaC family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150374423|dbj|BAF67683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368541|gb|ABX29512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253724102|gb|EES92831.1| ribonuclease Z [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|257861217|gb|EEV84030.1| ribonuclease Z [Staphylococcus aureus A5948]
gi|259160811|gb|EEW45831.1| hypothetical protein SA930_1605 [Staphylococcus aureus 930918-3]
gi|259162760|gb|EEW47325.1| hypothetical protein SAD30_0248 [Staphylococcus aureus D30]
gi|269940996|emb|CBI49380.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282592760|gb|EFB97766.1| ribonuclease Z [Staphylococcus aureus A9765]
gi|294824560|gb|EFG40983.1| ribonuclease Z [Staphylococcus aureus A9754]
gi|302333176|gb|ADL23369.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751335|gb|ADL65512.1| metallo-beta-lactamase, AtsA/ElaC family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340636|gb|EFM06570.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|315198805|gb|EFU29133.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CGS01]
gi|320140612|gb|EFW32466.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144148|gb|EFW35917.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MRSA177]
gi|329314182|gb|AEB88595.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus T0131]
gi|329725275|gb|EGG61762.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21189]
gi|365172038|gb|EHM62783.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21209]
gi|365173607|gb|EHM64096.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21178]
gi|365240587|gb|EHM81359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21232]
gi|365241072|gb|EHM81827.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21340]
gi|371985616|gb|EHP02677.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21283]
gi|374363410|gb|AEZ37515.1| ribonuclease Z [Staphylococcus aureus subsp. aureus VC40]
gi|375018164|gb|EHS11744.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-24]
gi|375025283|gb|EHS18688.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-88]
gi|375027884|gb|EHS21242.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-91]
gi|375036972|gb|EHS30030.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-111]
gi|375368744|gb|EHS72652.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-125]
gi|375370759|gb|EHS74557.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-189]
gi|375371662|gb|EHS75429.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-157]
gi|377697458|gb|EHT21813.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1114]
gi|377722373|gb|EHT46499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG547]
gi|377738768|gb|EHT62777.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742827|gb|EHT66812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744835|gb|EHT68812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG2018]
gi|377763355|gb|EHT87211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC345D]
gi|383972799|gb|EID88823.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CO-23]
gi|421956750|gb|EKU09079.1| Ribonuclease Z [Staphylococcus aureus CN79]
gi|436431051|gb|ELP28405.1| ribonuclease Z [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436506113|gb|ELP41952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21282]
Length = 306
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|386077497|ref|YP_005991022.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
gi|354986678|gb|AER30802.1| ribonuclease Z Rnz [Pantoea ananatis PA13]
Length = 303
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 34/241 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K V+ + S + L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALSLSSSY--TDYPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 116 VIEIAAGEVLD-DGEFRVTAWPMNHTIDCFGYRIEQRDKPGFLDAARLKAEGVP-RGPWY 173
Query: 231 EKLKKSGVEIT---------DIILSPE-----VAFTGDTT-SEFMLNPRNADALRAKILI 275
++LK+ G IT L P +A GDT +E L A +++
Sbjct: 174 QQLKQ-GERITLEDGRTIDGAAYLGPSTKGKTLAIFGDTAPTEVALQL----AANVDVMV 228
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E T L+D ++ E A GH+ + AK K ++ THFSSRY D+ + + + Q
Sbjct: 229 HETT-LEDALA-EKANGRGHSTTVQAATVAKQAGAKRMIATHFSSRYLARDMTRLLAECQ 286
Query: 336 S 336
+
Sbjct: 287 A 287
>gi|403238201|ref|ZP_10916787.1| ribonuclease Z [Bacillus sp. 10403023]
Length = 307
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 108/248 (43%), Gaps = 50/248 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKP-PTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ SR K T++ P IK +E + S ++ L+
Sbjct: 59 VFITHLHGDHIFGLPGFLGSRSFQGGKSLLTVYGPKGIKAFIETSLTV--STTHIRYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYI------- 223
+V ++ G +E + V + H I S GY I LL KL K+ I
Sbjct: 117 VVEIEEGVIFE-DDQFCVIAKELDHGIQSFGYRIVEKDLPGTLLVDKLSKEGIKPGPIYQ 175
Query: 224 --------------HLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNAD 267
HL GK+ K G I I+ GDT E + ++AD
Sbjct: 176 KIKEGQTVVLEDGRHLNGKEYIGAPKKG-RIATIL--------GDTRYVKESIELAKDAD 226
Query: 268 ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+LI EATF E + H + H+ ++ E AK K ++LTH SSRY +D
Sbjct: 227 -----LLIHEATFRSKEADLAH--DYFHSTTTQAAEVAKLASVKNLILTHISSRYQGDDS 279
Query: 328 RQAVLKLQ 335
R+ + + Q
Sbjct: 280 RELLEEAQ 287
>gi|418875441|ref|ZP_13429698.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
gi|377769997|gb|EHT93763.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC93]
Length = 306
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|398799521|ref|ZP_10558810.1| ribonuclease Z [Pantoea sp. GM01]
gi|398098491|gb|EJL88777.1| ribonuclease Z [Pantoea sp. GM01]
Length = 303
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 115/252 (45%), Gaps = 48/252 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + + +P TI+ P I++ +E + S L V
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGIPEPMTIYGPAGIRQFIETALSLSGSYTSYPLEIV 117
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
E+ LV LD GE V + +HVI GY I +L +LK +
Sbjct: 118 EIEAGLV-LDDGE-------FRVTAWPMNHVIECFGYRIEQHDKPGFLDAPRLKAEGVPR 169
Query: 222 ---YIHLK-GKQIEKLKKSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADAL 269
Y LK GK+I+ + G EI L P +A GDT T + NAD
Sbjct: 170 GPWYQDLKAGKRIQ--LEDGREINGAEYLGPATKGKVLAIFGDTAPTDVALQLAANAD-- 225
Query: 270 RAKILITEATFLDDEMSI-EHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIR 328
+++ E T E ++ E A GH+ + E AK K ++ THFSSRY +D
Sbjct: 226 ---VMVHETTL---ETALQEKANGRGHSTTIQAAEVAKQSGAKRLIATHFSSRYLSKDRE 279
Query: 329 QAVLKLQSKVSA 340
+ + + QS +A
Sbjct: 280 KLLAECQSVFAA 291
>gi|282600416|ref|ZP_05974219.2| ribonuclease Z [Providencia rustigianii DSM 4541]
gi|282565280|gb|EFB70815.1| ribonuclease Z [Providencia rustigianii DSM 4541]
Length = 306
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 32/244 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P TI+ P +K+ +E + S + L+
Sbjct: 61 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTIYGPKGLKQYIETALSLSSSY--MTYPLE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI------- 223
++ ++ G+ ++ ++V + H + GY I L KL + I
Sbjct: 119 IIEIEEGQLFD-DGKLIVTAYSLDHRVECYGYRIEEYAKLGALNADKLARDNIPRGPWML 177
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK GKQI+ V TD + P VA GDT T +L ++AD + + +
Sbjct: 178 ALKQGKQIQLDDGREVNGTDYLEEPRKGKVVAIFGDTIPTPNALLLAKDADVMVHETTL- 236
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
EA F D A + GH+ + A+ K + TH S+RY +DI + + + Q+
Sbjct: 237 EAEFED------KANERGHSTTRQAALLARQAGVKRFIATHISARYGPQDIPRLLAECQA 290
Query: 337 KVSA 340
+ A
Sbjct: 291 EFPA 294
>gi|429122151|ref|ZP_19182750.1| Ribonuclease Z [Cronobacter sakazakii 680]
gi|426323359|emb|CCK13487.1| Ribonuclease Z [Cronobacter sakazakii 680]
Length = 304
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 44/246 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGTKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALR 270
G ++LK+ G +T D + +P ++A GDT T + + R+ D
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVD--- 226
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ E T L+ M+ E A GH+ + E A+ K +L+THFSSRY E+ ++
Sbjct: 227 --VMVHETT-LEAAMA-EKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQRL 282
Query: 331 VLKLQS 336
+ + Q+
Sbjct: 283 LAECQA 288
>gi|225022017|ref|ZP_03711209.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
gi|224945214|gb|EEG26423.1| hypothetical protein CORMATOL_02049 [Corynebacterium matruchotii
ATCC 33806]
Length = 307
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 31/231 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP +++SR P TI+ PP I E V ++ S ++ L
Sbjct: 58 VFITHMHGDHTFGLPGFISSRAFRTPGDPLTIYGPPGIAEFVS--VTLNTSASHIRYPLK 115
Query: 178 LVALD-VGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQ-------------- 221
+V LD GE ++D V VR H + S Y I + + Q
Sbjct: 116 VVELDHAGEVPLGQDDTVTVRYTTLDHGVQSYAYRITEADQPGELQVDKLIDHGVQPGPC 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNAD-ALRAKILI 275
Y LK G+ I + + D + P++ GDT P +AD A A +++
Sbjct: 176 YGQLKRGEDITLDNGTVLRSADFVGPPQSGPDIVLFGDT----RFVPGHADFAAGADLMV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EAT+ + + AQ++ H+ ++ E A+ K ++LTHFS+RY ++
Sbjct: 232 HEATYGPE--YPDKAQKYFHSTTTQAAELARQAGVKKLVLTHFSARYDTDE 280
>gi|291619324|ref|YP_003522066.1| Rnz [Pantoea ananatis LMG 20103]
gi|378765240|ref|YP_005193699.1| ribonuclease Z [Pantoea ananatis LMG 5342]
gi|386017570|ref|YP_005935868.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|291154354|gb|ADD78938.1| Rnz [Pantoea ananatis LMG 20103]
gi|327395650|dbj|BAK13072.1| ribonuclease Z Rnz [Pantoea ananatis AJ13355]
gi|365184712|emb|CCF07662.1| ribonuclease Z [Pantoea ananatis LMG 5342]
Length = 338
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 34/241 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K V+ + S + L+
Sbjct: 93 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKAFVDSALSLSSSY--TDYPLE 150
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 151 VIEIAAGEVLD-DGEFRVTAWPMNHTIDCFGYRIEQRDKPGFLDAARLKAEGVP-RGPWY 208
Query: 231 EKLKKSGVEIT---------DIILSPE-----VAFTGDTT-SEFMLNPRNADALRAKILI 275
++LK+ G IT L P +A GDT +E L A +++
Sbjct: 209 QQLKQ-GERITLEDGRTIDGAAYLGPSTKGKTLAIFGDTAPTEVALQL----AANVDVMV 263
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E T L+D ++ E A GH+ + AK K ++ THFSSRY D+ + + + Q
Sbjct: 264 HETT-LEDALA-EKANGRGHSTTVQAATVAKQAGAKRMIATHFSSRYLARDMTRLLAECQ 321
Query: 336 S 336
+
Sbjct: 322 A 322
>gi|440759280|ref|ZP_20938426.1| Ribonuclease Z [Pantoea agglomerans 299R]
gi|436426983|gb|ELP24674.1| Ribonuclease Z [Pantoea agglomerans 299R]
Length = 303
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISGSY--TDYPLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
LV ++ G T + + + + H + GY I L +LK + + +G
Sbjct: 116 LVEIEAGWTLD-DGEFRISAWPLSHPVACFGYRIEQHDKPGLLDAARLKAEGVP-RGPWF 173
Query: 231 EKLKKS---GVEITDII-----LSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
++LK+ +E +I L P ++A GDT + AD +++ E
Sbjct: 174 QQLKQGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTDVALQMAAD---VDLMVHE 230
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
T + +E A GH+ + + AK K ++ THFSSRY +D+ + + + Q+
Sbjct: 231 TTL--EAAMMEKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSRLLAECQT- 287
Query: 338 VSAKVVPLTE 347
+ P TE
Sbjct: 288 ----IFPRTE 293
>gi|372275851|ref|ZP_09511887.1| ribonuclease Z [Pantoea sp. SL1_M5]
gi|390436244|ref|ZP_10224782.1| ribonuclease Z [Pantoea agglomerans IG1]
Length = 303
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 39/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPRGLKTFVETALSISGSY--TDYPLT 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G T + + + + H + GY I L +LK + + +G
Sbjct: 116 IVEIEAGWTLD-DGEFRISAWPLSHPVECFGYRIEQHDKPGLLDAARLKAEGVP-RGPWF 173
Query: 231 EKLKKS---GVEITDII-----LSPE-----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
++LK+ +E +I L P +A GDT +E L N D L+
Sbjct: 174 QQLKQGECVTLEDGRVINGADYLGPATPGKTLAIFGDTAPTEVALQLAANVD------LM 227
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
T L+ M +E A GH+ + E AK K ++ THFSSRY +D+ + + + Q
Sbjct: 228 VHETTLEAAM-VEKANGRGHSTTLQAAEVAKRAGAKRLIATHFSSRYLAKDMNRLLAECQ 286
Query: 336 SKVSAKVVPLTE 347
+ + P TE
Sbjct: 287 T-----IFPCTE 293
>gi|399576124|ref|ZP_10769881.1| rnase z [Halogranum salarium B-1]
gi|399238835|gb|EJN59762.1| rnase z [Halogranum salarium B-1]
Length = 310
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 41/250 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + S + I VPP
Sbjct: 35 FDCGEGTQRQMMRFNTGFNVSHLFVTHLHGDHILGIPGLIQSWDFNDRDAALAIHVPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
K+ +++L +H + +++ + G T + VR FKT+H SQGY I
Sbjct: 95 KKHIKRL--VHAGGYDPSYPVNIHEVSPGSTALDGEEFEVRTFKTNHRTRSQGYAIVEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITD-IILSPE-----------VAFTGDT 255
R+K +++ G +L VE+ D ++ PE + +TGDT
Sbjct: 153 RPGRFDREKAEEELGIPPGPMYGRLHNGEAVELDDGRVIQPEQVVGDPRPGRKLVYTGDT 212
Query: 256 TSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
P A A A +LI +ATF DE A+Q H+ E + A K
Sbjct: 213 ------RPVQATVEMAEDADLLIHDATFASDESG--RARQTYHSTAREAADVASRANVKR 264
Query: 313 VLLTHFSSRY 322
+ LTH SSRY
Sbjct: 265 LALTHISSRY 274
>gi|239827626|ref|YP_002950250.1| ribonuclease Z [Geobacillus sp. WCH70]
gi|259494136|sp|C5D428.1|RNZ_GEOSW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239807919|gb|ACS24984.1| ribonuclease Z [Geobacillus sp. WCH70]
Length = 308
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P TI+ P I+ +E + S ++ +L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGDTPLTIYGPKGIQAFIE--ISLSVSYTRLKYDLQ 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK---------KQ 221
+V ++ G +E +V+ + H IPS G+ + LL KLK Q
Sbjct: 117 VVEIEEGTIFEDERFLVIAK-QLDHGIPSYGFRVVEKDLPGTLLVDKLKVLGIRPGPIYQ 175
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ D + P+ V GDT A A +L+ E
Sbjct: 176 QIKL-GKTVQLDNGTVIDGRDFVGPPQKGRIVTILGDTR---YCEASVELAKEADVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
ATF ++ ++ H + H+ + E AK K ++LTH SSRY
Sbjct: 232 ATFAAEDSALAH--DYFHSTAVQAAEVAKLAGVKRLILTHISSRYQ 275
>gi|418562635|ref|ZP_13127092.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
gi|371973739|gb|EHO91087.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21262]
Length = 306
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDYLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|49483754|ref|YP_040978.1| hypothetical protein SAR1581 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82751097|ref|YP_416838.1| metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257425627|ref|ZP_05602051.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428288|ref|ZP_05604686.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430925|ref|ZP_05607305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257433614|ref|ZP_05609972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257436527|ref|ZP_05612571.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|258423158|ref|ZP_05686051.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282904084|ref|ZP_06311972.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|282905911|ref|ZP_06313766.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908821|ref|ZP_06316639.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911140|ref|ZP_06318942.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914309|ref|ZP_06322095.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282916770|ref|ZP_06324528.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282919278|ref|ZP_06327013.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282924603|ref|ZP_06332271.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|283770575|ref|ZP_06343467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283958266|ref|ZP_06375717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|293503386|ref|ZP_06667233.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|293510401|ref|ZP_06669107.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|293530940|ref|ZP_06671622.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|295428080|ref|ZP_06820712.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590952|ref|ZP_06949590.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|384547739|ref|YP_005736992.1| metallo-beta-lactamase [Staphylococcus aureus subsp. aureus ED133]
gi|384867523|ref|YP_005747719.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|387780598|ref|YP_005755396.1| hypothetical protein SARLGA251_14120 [Staphylococcus aureus subsp.
aureus LGA251]
gi|415682301|ref|ZP_11447617.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|416841158|ref|ZP_11904220.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|416848683|ref|ZP_11907877.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|417887931|ref|ZP_12532050.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|417890145|ref|ZP_12534224.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|417896985|ref|ZP_12540928.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|418284064|ref|ZP_12896796.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|418308002|ref|ZP_12919669.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|418559026|ref|ZP_13123573.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|418564567|ref|ZP_13128988.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|418582431|ref|ZP_13146509.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597143|ref|ZP_13160676.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|418603369|ref|ZP_13166756.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|418889319|ref|ZP_13443452.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|418892234|ref|ZP_13446347.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|418898137|ref|ZP_13452207.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418901009|ref|ZP_13455065.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|418909355|ref|ZP_13463351.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|418917400|ref|ZP_13471359.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|418923185|ref|ZP_13477101.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982509|ref|ZP_13530217.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|418986176|ref|ZP_13533861.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|418994230|ref|ZP_13541865.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|56749415|sp|Q6GGJ4.1|RNZ_STAAR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123549237|sp|Q2YYA2.1|RNZ_STAAB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49241883|emb|CAG40576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82656628|emb|CAI81054.1| probable metallo-beta-lactamase [Staphylococcus aureus RF122]
gi|257271321|gb|EEV03467.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275129|gb|EEV06616.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278355|gb|EEV08991.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 68-397]
gi|257281707|gb|EEV11844.1| ribonuclease Z [Staphylococcus aureus subsp. aureus E1410]
gi|257283878|gb|EEV14001.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M876]
gi|257846608|gb|EEV70629.1| ribonuclease Z [Staphylococcus aureus A9635]
gi|282313438|gb|EFB43833.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C101]
gi|282317088|gb|EFB47462.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C427]
gi|282319257|gb|EFB49609.1| ribonuclease Z [Staphylococcus aureus subsp. aureus D139]
gi|282321490|gb|EFB51815.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M899]
gi|282324835|gb|EFB55145.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327085|gb|EFB57380.1| ribonuclease Z [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331203|gb|EFB60717.1| ribonuclease Z [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595702|gb|EFC00666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus C160]
gi|283460722|gb|EFC07812.1| ribonuclease Z [Staphylococcus aureus subsp. aureus H19]
gi|283790415|gb|EFC29232.1| ribonuclease Z [Staphylococcus aureus subsp. aureus A017934/97]
gi|290920208|gb|EFD97274.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M1015]
gi|291095052|gb|EFE25317.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 58-424]
gi|291466765|gb|EFF09285.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M809]
gi|295128438|gb|EFG58072.1| ribonuclease Z [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575838|gb|EFH94554.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MN8]
gi|298694788|gb|ADI98010.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus ED133]
gi|312438028|gb|ADQ77099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH60]
gi|315195401|gb|EFU25788.1| probable metallo-beta-lactamase [Staphylococcus aureus subsp.
aureus CGS00]
gi|323439494|gb|EGA97215.1| metallo-beta-lactamase [Staphylococcus aureus O11]
gi|323441538|gb|EGA99189.1| metallo-beta-lactamase [Staphylococcus aureus O46]
gi|341840251|gb|EGS81771.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21235]
gi|341855838|gb|EGS96682.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21200]
gi|341856960|gb|EGS97787.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21195]
gi|344177700|emb|CCC88179.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|365164928|gb|EHM56758.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21202]
gi|365242384|gb|EHM83093.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21194]
gi|371975704|gb|EHO92996.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21264]
gi|371976376|gb|EHO93666.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21252]
gi|374393184|gb|EHQ64499.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21345]
gi|374395379|gb|EHQ66646.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21342]
gi|377702406|gb|EHT26728.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704220|gb|EHT28530.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1500]
gi|377704790|gb|EHT29099.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1242]
gi|377710841|gb|EHT35079.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1605]
gi|377730528|gb|EHT54595.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1176]
gi|377735144|gb|EHT59180.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1233]
gi|377744027|gb|EHT68005.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG290]
gi|377750574|gb|EHT74512.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1267]
gi|377752002|gb|EHT75926.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG149]
gi|377752827|gb|EHT76745.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1524]
gi|377761172|gb|EHT85048.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 306
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|379021285|ref|YP_005297947.1| ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|386729204|ref|YP_006195587.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|387602845|ref|YP_005734366.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|404478852|ref|YP_006710282.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
gi|417905435|ref|ZP_12549246.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|418310092|ref|ZP_12921642.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|418978226|ref|ZP_13526027.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|283470783|emb|CAQ49994.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ST398]
gi|341843711|gb|EGS84933.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21269]
gi|359830594|gb|AEV78572.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus M013]
gi|365237549|gb|EHM78395.1| ribonuclease Z [Staphylococcus aureus subsp. aureus 21331]
gi|379993842|gb|EIA15287.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus DR10]
gi|384230497|gb|AFH69744.1| Ribonuclease Z [Staphylococcus aureus subsp. aureus 71193]
gi|404440341|gb|AFR73534.1| hypothetical protein C248_1544 [Staphylococcus aureus 08BA02176]
Length = 306
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|403384070|ref|ZP_10926127.1| ribonuclease Z [Kurthia sp. JC30]
Length = 313
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 114/260 (43%), Gaps = 48/260 (18%)
Query: 104 FDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G P + + + VFITH H DHI GLP ++ SR P TI+ P
Sbjct: 36 FDCGEATQHQILETPIKPRKIDKVFITHLHGDHIFGLPGFIGSRSFLGGNTPLTIYGPKG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+KE V + + ++ L V ++ G YE +VR HV+P GY I
Sbjct: 96 LKEWVTMTNTVTGT--HLTYPLHFVEVEEGVIYE-DEQFIVRAMPLQHVVPCWGYRI--- 149
Query: 215 RKKLKKQYIHL---------KGKQIEKLKKSGVEIT----------DIILSPEVAFT--- 252
+K + + KG + KL KSG +IT D++ P+ F
Sbjct: 150 EQKALNGALDIDKATALGVPKGPLLGKL-KSGEDITLADGTVVCSDDVLSEPKPGFIVTI 208
Query: 253 -GDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
GDT ++ ++AD +L+ E+TF D + A Q+GH+ E E A+
Sbjct: 209 LGDTRKCENAIILAQDAD-----VLVHESTF--DAATENLASQYGHSTNKEAAEVAEAAG 261
Query: 310 NKAVLLTHFSSRYHIEDIRQ 329
K +LL H S+R+ DI +
Sbjct: 262 VKTLLLNHLSARFLATDIAR 281
>gi|295426307|ref|ZP_06818967.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
gi|295064046|gb|EFG54994.1| ribonuclease Z [Lactobacillus amylolyticus DSM 11664]
Length = 311
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 106/252 (42%), Gaps = 45/252 (17%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FDIG I + + FI+H H DHI GLP +A+R ++ P TI+ PP
Sbjct: 36 FDIGEATQHQILKTNIRLRKVTKIFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+++ V+ + R+ V + V L G D V K H +PS GY I
Sbjct: 96 LEQFVKTSLRVSRT--KVSYPIKFVELTEGGLIYQGKDFRVYTEKLDHRVPSFGYRIVEN 153
Query: 213 -----LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE-----VAFTGD 254
LL KL K +I LK G+QI + + D L P V D
Sbjct: 154 SRPGELLMNKLAKYHIPNGPLYGKLKAGEQIALADGTILNGKD-FLGPARPGRIVTIIYD 212
Query: 255 TTSEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T S P A A A +L+ E+TF +E + H+ H S +E A+ R+ V
Sbjct: 213 TRS----TPNIAKLAQNADVLVHESTFAGNEAKLAHSYYH-----STSVEAAQVARDNGV 263
Query: 314 ---LLTHFSSRY 322
L H S+RY
Sbjct: 264 KKLCLDHISARY 275
>gi|325103868|ref|YP_004273522.1| RNAse Z [Pedobacter saltans DSM 12145]
gi|324972716|gb|ADY51700.1| RNAse Z [Pedobacter saltans DSM 12145]
Length = 303
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH GL ++S L KP +F P + + ++ ++ S + +L+
Sbjct: 58 IFISHLHGDHFFGLIGLISSMNLNGRRKPLNLFGPQGLLDIIQ--IQLKYSDTRLIFDLN 115
Query: 178 LVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-----QY 222
ALD G YE R D V +H IP G+++ +L++K++K +Y
Sbjct: 116 FTALDPNNTGLVYETR-DFTVETIPLNHRIPCTGFIVREKQRQRKILKEKVEKLNIPPEY 174
Query: 223 IHLKGKQIEKLKKSGV--EITDIILSPEVAFTGDTTSEFMLNPRNADAL-RAKILITEAT 279
L + I+ SG + D+ +V S+ +L+ R + L + L EAT
Sbjct: 175 YPLIKRGIDYTDSSGYVYKAFDLTTEADVPKAYAYCSDTLLDERYINKLTKVDTLYHEAT 234
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
FL D I+ A++ H+ E AK I K +L+ HFS+RY
Sbjct: 235 FLHD--MIDRAKETHHSTALEAATVAKKIGAKKLLIGHFSARY 275
>gi|56420868|ref|YP_148186.1| ribonuclease Z [Geobacillus kaustophilus HTA426]
gi|375009401|ref|YP_004983034.1| ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
gi|76363377|sp|Q5KXG8.1|RNZ_GEOKA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56380710|dbj|BAD76618.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359288250|gb|AEV19934.1| Ribonuclease Z [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 307
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 39/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRSFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF E + H + H+ ++ E A+ K ++LTH SSRY E Q V + +
Sbjct: 230 HEATFAAAEQRLAH--DYFHSTTTDAAEVARRAGAKRLILTHISSRYQGEAALQLVAEAR 287
Query: 336 SKVSAKVVPLTE 347
S V P TE
Sbjct: 288 S-----VFPNTE 294
>gi|290473490|ref|YP_003466359.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
gi|289172792|emb|CBJ79563.1| binuclear zinc phosphodiesterase [Xenorhabdus bovienii SS-2004]
Length = 304
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 34/232 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P I++ VE ++ S + LD
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDPVTLYGPKGIRQFVETTLQLSGSF--LTYPLD 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + G ++ ++ V + +H + GY I L ++L + I +G +
Sbjct: 117 IVEVQSGLLFD-DGELKVTAYALNHRVECYGYRIEEHDKPGGLNTQRLNQDNIP-RGSWM 174
Query: 231 EKLKKSG---------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK+ G V D + +P +A GDT T E + N D +++
Sbjct: 175 QTLKQGGTVTLEDGRTVCGKDYLGAPISGKSLAIFGDTTPTPEALKLAANVD-----VMV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E T L+D ++ E A +GH+ + A+ + K + TH S RY IED
Sbjct: 230 HEIT-LEDALA-EKANNNGHSTTKQAATLARDAKAKHFIATHISGRYGIEDC 279
>gi|448238624|ref|YP_007402682.1| ribonuclease Z [Geobacillus sp. GHH01]
gi|445207466|gb|AGE22931.1| ribonuclease Z [Geobacillus sp. GHH01]
Length = 307
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 39/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF E + H + H+ ++ E A+ K ++LTH SSRY E Q V + +
Sbjct: 230 HEATFAAAEQRLAH--DYFHSTTTDAAEVARRAGAKRLILTHISSRYQGEAALQLVAEAR 287
Query: 336 SKVSAKVVPLTE 347
S V P TE
Sbjct: 288 S-----VFPNTE 294
>gi|21283187|ref|NP_646275.1| hypothetical protein MW1458 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486342|ref|YP_043563.1| hypothetical protein SAS1444 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297207776|ref|ZP_06924211.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300911857|ref|ZP_07129300.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|418934476|ref|ZP_13488298.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|418988572|ref|ZP_13536244.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|448740667|ref|ZP_21722643.1| ribonuclease Z [Staphylococcus aureus KT/314250]
gi|41017562|sp|Q8NWE6.1|RNZ_STAAW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|56749386|sp|Q6G960.1|RNZ_STAAS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|21204627|dbj|BAB95323.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244785|emb|CAG43221.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887793|gb|EFH26691.1| ribonuclease Z [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300886103|gb|EFK81305.1| ribonuclease Z [Staphylococcus aureus subsp. aureus TCH70]
gi|377717665|gb|EHT41840.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIG1835]
gi|377770570|gb|EHT94331.1| ribonuclease Z [Staphylococcus aureus subsp. aureus CIGC128]
gi|445548634|gb|ELY16884.1| ribonuclease Z [Staphylococcus aureus KT/314250]
Length = 306
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H +PS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGVPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|311030610|ref|ZP_07708700.1| ribonuclease Z [Bacillus sp. m3-13]
Length = 306
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 35/233 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P T++ P IKE +E + S+ +V+ L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDTPLTVYGPVGIKEYIETSLRV--SMTHVKYPLI 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ + + D ++ K H IPS G+ I LL K+K+ I G +
Sbjct: 117 IEEFEEDGLFLEEEDFTIKGKKLVHGIPSFGFRIIQKDLPGALLMDKVKQSNIP-SGPHL 175
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNAD-ALRAKILI 275
+KLK+ G IT D I P+ + GDT P + + A A +LI
Sbjct: 176 QKLKE-GKSITLSDGRIVVGKDFIGPPKKGKVITILGDTR----YTPVSVELAEAADVLI 230
Query: 276 TEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
EATF DEM A+++ H+ + + AK +LLTH S+RY ED+
Sbjct: 231 HEATFAAKDEML---AREYFHSTTVQAAQVAKEAAANQLLLTHISARYQQEDV 280
>gi|302347992|ref|YP_003815630.1| ribonuclease Z [Acidilobus saccharovorans 345-15]
gi|302328404|gb|ADL18599.1| Ribonuclease Z [Acidilobus saccharovorans 345-15]
Length = 293
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 16/222 (7%)
Query: 107 GRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEI 165
G PT+ +F+ +THGH DHI GLP + + L K TI P + E + +L
Sbjct: 52 GISPTKV---DFIVLTHGHGDHINGLPGLLGTMQLSGRKSRLTIIAPKYLAEPIRELINA 108
Query: 166 HRSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGY-VIYLLRKKLKKQ 221
++ +N+ V D G + R+ +V+ F+ H I + GY + + L ++ +
Sbjct: 109 NKFEDQFPVNVIDVTGDEGSLTLSSWGRDRLVLSWFRACHSIEAYGYSLTWELGPRIAEP 168
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFL 281
++ Q KL + G S ++++TGDT+ + A A +LI E+TF
Sbjct: 169 ---VEPSQARKLLEEGGSGLTSPRSFKLSYTGDTSP---CDSVVKGASGANVLIHESTF- 221
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
D M E A ++GH+ E+A ++L+H S+RY
Sbjct: 222 DSSMKDE-ASKYGHSTSVGAAEDAVKANVGKLILSHISTRYE 262
>gi|304397924|ref|ZP_07379800.1| ribonuclease Z [Pantoea sp. aB]
gi|304354635|gb|EFM19006.1| ribonuclease Z [Pantoea sp. aB]
Length = 303
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + L
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTSPMTVYGPKGLKTFVETALSISGSY--TDYPLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
LV ++ G T + + + + H + GY I L +LK + + +G
Sbjct: 116 LVEIEAGWTLD-DGEFRISAWPLSHPVACFGYRIEQHDKPGLLDAARLKAEGVP-RGPWF 173
Query: 231 EKLKKS---GVEITDII-----LSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
++LK+ +E +I L P ++A GDT + AD +++ E
Sbjct: 174 QQLKQGECVTLEDGRVINGADYLGPATPGKKLAIFGDTAPTDVALQLAAD---VDLMVHE 230
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
T + +E A GH+ + + AK K ++ THFSSRY +D+ + + + Q+
Sbjct: 231 TTL--EAAMMEKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSRLLAECQT- 287
Query: 338 VSAKVVPLTE 347
+ P TE
Sbjct: 288 ----IFPRTE 293
>gi|379795864|ref|YP_005325862.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872854|emb|CCE59193.1| ribonuclease Z [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 306
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 44/280 (15%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGE--TYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK VE + S LN + +++ + TY V +H IPS GY +
Sbjct: 96 GIKAYVEMSLNLSES----HLNYPITYIEIDDHLTYHHEG-FTVEAHLLNHGIPSYGYRV 150
Query: 212 Y-------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTG 253
+ + LK+ +Y +K + + + D P VA G
Sbjct: 151 IAPETTGTINVEALKQIGLEPGPKYQEVKSQDTFEHNGQVYQSQDFRGTSKQGPIVAIFG 210
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + L ++AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 211 DTKPCANERLISQDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFTLIKEANVK 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351
L+TH S+RY++EDI + L A + F S
Sbjct: 264 RTLITHLSNRYNLEDINEIYQTLIQSEDAPNFSFVKDFDS 303
>gi|241896329|ref|ZP_04783625.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
gi|241870309|gb|EER74060.1| ribonuclease Z [Weissella paramesenteroides ATCC 33313]
Length = 339
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 38/249 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R + Q+ + FITH H DHI GLP ++SR + TI+ P
Sbjct: 49 FDVGEGTQRQMLQSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDELTIYGPKG 108
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ VE + ++ + + +D G+ + + V H I S GY +
Sbjct: 109 IRQFVEVSLRVSQTHLTYPIKFVELPVDGGDVLQT-DKFTVSALPLDHRITSFGYRVTEH 167
Query: 213 -----LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
LL ++L++ Y LK G + + D+I +P+ VA GDT
Sbjct: 168 AHPGELLVERLRELNVPAGPLYGQLKQGNDVTLADGRTIHGADVIGAPQPGRCVAIIGDT 227
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T+ M RNAD +L+ E+T+ E + A+ H HT + AK + +
Sbjct: 228 RKTNNTMTLARNAD-----VLVHESTYGKGEG--KQARNHFHTTSVQAATIAKQAQVGRL 280
Query: 314 LLTHFSSRY 322
LLTH S+RY
Sbjct: 281 LLTHISARY 289
>gi|312136968|ref|YP_004004305.1| rnase z [Methanothermus fervidus DSM 2088]
gi|311224687|gb|ADP77543.1| RNAse Z [Methanothermus fervidus DSM 2088]
Length = 328
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI G+P + S G N K P TI+ PP IKE E + + LG ++ D
Sbjct: 57 IFISHLHGDHILGIPGLIQSMGFRNRKKPLTIYGPPGIKEVKEAMMK----LGEFSIDFD 112
Query: 178 LVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLK---GKQ 229
+ ++ G +E + KT H + Y I ++ L+++ I L G
Sbjct: 113 INVKEIKNEGIVFE-NEKYKIECIKTKHTTENYSYSIEEKKRPRFLREKAIKLGVKPGPA 171
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTS-EFMLN-PRNADALRAKILI 275
KL + V++ D I+ PE V ++GDT E M+ ++AD +LI
Sbjct: 172 FSKLHRGIPVKVGDRIVKPEEVLGKPRKGIKVVYSGDTVPHEKMIEFAKDAD-----LLI 226
Query: 276 TEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
++TF E E+ A + GH+ + + AK K ++LTH S+RY
Sbjct: 227 HDSTF---EAGKENKALETGHSTAKDAAKIAKEANVKYLVLTHLSTRYR 272
>gi|340624205|ref|YP_004742658.1| ribonuclease Z [Methanococcus maripaludis X1]
gi|339904473|gb|AEK19915.1| ribonuclease Z [Methanococcus maripaludis X1]
Length = 308
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 41/251 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV +
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIISTNNYEVFSYPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKSG--------VEITDIILSPE----VAFTGDTT 256
+K K+KK I + G +++LK + + D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVKKLGIEI-GPDLKRLKDGFNVELNGEIITLNDVTLPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+EF+ L+ LI EATF D+ ++A++ H+ ++ + AK
Sbjct: 212 PLTEFAEFL------KELKCNTLIHEATF--DKTMDKNAKETLHSTATDALNIAKLSGVS 263
Query: 312 AVLLTHFSSRY 322
VLLTH S+RY
Sbjct: 264 TVLLTHISARY 274
>gi|410084875|ref|ZP_11281596.1| Ribonuclease Z [Morganella morganii SC01]
gi|409768520|gb|EKN52580.1| Ribonuclease Z [Morganella morganii SC01]
Length = 305
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 41/262 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
+ P + + +FITH H DHI GLP + SR + + P T+F P + + VE +
Sbjct: 48 KSPVKIPKLEKIFITHLHGDHIFGLPGLLCSRSMGGCEDPLTLFGPQGLAQFVETALTLS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLK 219
S + L+++ +D + V + H + S GY I L ++LK
Sbjct: 108 GSY--LTFPLEIIEIDEEGVIYDDGQLKVSAYSLEHPVISYGYRIEEHDKPGALDAQRLK 165
Query: 220 KQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VAFTGDTT-SEFMLN-P 263
+ + G ++ LK+ G E+T D + P+ + GDT E L
Sbjct: 166 AEGVP-GGPWMQTLKQGG-EVTLDDGRVICGADYLGEPQRGRHLVIFGDTAPCENALKLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV---LLTHFSS 320
+NAD +++ EAT LD M+ E A GH S ++ A R+ V + THFS
Sbjct: 224 QNAD-----VIVLEAT-LDGTMT-EKANSRGH---SSTVQTATLARDAGVGTLIATHFSG 273
Query: 321 RYHIEDIRQAVLKLQSKVSAKV 342
RY ED + + Q+ A V
Sbjct: 274 RYSEEDCERLLRGCQAIFPATV 295
>gi|138895904|ref|YP_001126357.1| ribonuclease Z [Geobacillus thermodenitrificans NG80-2]
gi|134267417|gb|ABO67612.1| Metal-dependent hydrolase [Geobacillus thermodenitrificans NG80-2]
Length = 308
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 33/249 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I++ VE + + ELN
Sbjct: 61 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+ +D G ++ V + H +PS G+ + LL +LK Y
Sbjct: 119 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRVAEKDLPGPLLVDRLKALGVRPGPIYQ 177
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+K GK + + ++ + + P+ VA GDT A A ++I EA
Sbjct: 178 QIKQGKTVVLEDGTVLDGREFVGPPQKGRIVAVLGDTR---FCEAAIELAHEADVVIHEA 234
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
TF E + A+ + H+ ++ E AK K ++LTH SSRY E A LKL +
Sbjct: 235 TFAAAEQRL--ARDYFHSTTTDAAEVAKRAGAKRLILTHISSRYQGE----AALKLLEE- 287
Query: 339 SAKVVPLTE 347
+ +V P TE
Sbjct: 288 ARRVFPNTE 296
>gi|45358469|ref|NP_988026.1| ribonuclease Z [Methanococcus maripaludis S2]
gi|56749433|sp|Q6LYT2.1|RNZ_METMP RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|44921227|emb|CAF30462.1| conserved hypothetical protein [Methanococcus maripaludis S2]
Length = 308
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 109/259 (42%), Gaps = 57/259 (22%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIIFTNNYEVFSYPVVHSVPALAYVF--- 149
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEI----------------------TDIILSPE---- 248
K++KK + L EK+KK G+EI D+ L P+
Sbjct: 150 -KQVKKPRMDL-----EKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGIC 203
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
V ++GDT +EF+ L+ LI EATF D+ +A++ H+ ++ +
Sbjct: 204 VGYSGDTIPLKEFAEFL------KELKCNTLIHEATF--DKTMERNAKETLHSTATDALN 255
Query: 304 NAKWIRNKAVLLTHFSSRY 322
AK VLLTH S+RY
Sbjct: 256 IAKLSGVSTVLLTHISARY 274
>gi|196248795|ref|ZP_03147495.1| ribonuclease Z [Geobacillus sp. G11MC16]
gi|196211671|gb|EDY06430.1| ribonuclease Z [Geobacillus sp. G11MC16]
Length = 306
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 33/249 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I++ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRQFVETALTVSGTRLRYELN-- 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+ +D G ++ V + H +PS G+ + LL +LK Y
Sbjct: 117 IAEIDEGVIFDDER-FSVTAKRLDHGMPSYGFRVAEKDLPGPLLVDRLKALGVRPGPIYQ 175
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+K GK + + ++ + + P+ VA GDT A A ++I EA
Sbjct: 176 QIKQGKTVVLEDGTVLDGREFVGPPQKGRIVAVLGDTR---FCEAAIELAHEADVVIHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
TF E + A+ + H+ ++ E AK K ++LTH SSRY E A LKL +
Sbjct: 233 TFAAAEQRL--ARDYFHSTTTDAAEVAKRAGAKRLILTHISSRYQGE----AALKLLEE- 285
Query: 339 SAKVVPLTE 347
+ +V P TE
Sbjct: 286 ARRVFPNTE 294
>gi|429101132|ref|ZP_19163106.1| Ribonuclease Z [Cronobacter turicensis 564]
gi|426287781|emb|CCJ89219.1| Ribonuclease Z [Cronobacter turicensis 564]
Length = 324
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 30/239 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P I E +E + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTLRLSGSWTSYPLSVH 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ G+ ++ ++ V F H + GY I K LK G +
Sbjct: 139 EIT--EGQLFD-DGELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVAPGPLFQ 195
Query: 232 KLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+LK+ G +T D + +P ++A GDT P+ R ++
Sbjct: 196 QLKR-GETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTAP----TPQAVALAREVDVMVH 250
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
T L+ M+ E A GH+ + AK K +++THFSSRY ED ++ + + Q+
Sbjct: 251 ETTLEAAMA-EKANGRGHSTTQQAATVAKDAGAKRLVMTHFSSRYGAEDCQRLLAECQA 308
>gi|319892488|ref|YP_004149363.1| ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|386319238|ref|YP_006015401.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
gi|317162184|gb|ADV05727.1| Ribonuclease Z [Staphylococcus pseudintermedius HKU10-03]
gi|323464409|gb|ADX76562.1| ribonuclease Z [Staphylococcus pseudintermedius ED99]
Length = 305
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 121/273 (44%), Gaps = 44/273 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DH+ GLP + SR KP T+ P
Sbjct: 36 FDVGEATQHQILHHSIKLGKVSHIFITHMHGDHVFGLPGVLTSRSFQGGESKPLTVIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIY 212
IK+ VE + SL LN L +++ + + N V +H IP GY I
Sbjct: 96 GIKDYVE----YNLSLTYSHLNYPLHIIEIEDQMNLSINGFEVNARPLNHGIPCFGYRIQ 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
L +KL+ QY +K + + + D P+ V G
Sbjct: 152 APDTPGKLDVQKLQALGMPPGPQYQKVKSQDTFEFEGQIYNANDF-KGPDKKGQVVTIFG 210
Query: 254 DTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
DT S++ L A A +L+ E+T++D + ++ +A + H+H+ +++ + K
Sbjct: 211 DTRPSQYALEL----AKDADVLVHESTYIDGDKTLANA--YHHSHIEDVLALIEKASVKH 264
Query: 313 VLLTHFSSRYHIEDIR--QAVLKLQSKVSAKVV 343
LLTH SSRY EDI + LK+ S +S + V
Sbjct: 265 GLLTHISSRYMKEDINEIETKLKVHSPLSFQFV 297
>gi|381403203|ref|ZP_09927887.1| ribonuclease Z [Pantoea sp. Sc1]
gi|380736402|gb|EIB97465.1| ribonuclease Z [Pantoea sp. Sc1]
Length = 303
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE I S + LN
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPKGLKTFVETALAISGSYTDYPLN-- 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G T + + + + +H + GY I L +LK + + +G
Sbjct: 116 IVEIEAGWTLD-DGEFRISAWPLNHPVACFGYRIEQHDKPGLLDAARLKAEGVP-RGPWF 173
Query: 231 EKLKKS-GVEITD-------IILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
++LK+ V + D L P ++A GDT + AD L+
Sbjct: 174 QQLKQGECVTLEDGRVVNGADYLGPSTPGKKLAIFGDTAPTDVALQLAADV----DLMVH 229
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
T L+ M E A GH+ + + AK K ++ THFSSRY +D+ + + + Q+
Sbjct: 230 ETTLEAAME-EKANGRGHSTTLQAADVAKRAGAKRLIATHFSSRYLAKDMSRLLAECQT- 287
Query: 338 VSAKVVPLTE 347
+ P TE
Sbjct: 288 ----IFPRTE 293
>gi|91774034|ref|YP_566726.1| ribonuclease Z [Methanococcoides burtonii DSM 6242]
gi|91713049|gb|ABE52976.1| Ribonuclease Z [Methanococcoides burtonii DSM 6242]
Length = 305
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 29/235 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R T + + +FITH H DHI G+P V + +P TI+ P E VE+ +I
Sbjct: 46 RAKTGMMNLSSIFITHFHADHILGIPGLVQTMSFQGRTEPLTIYGP----EWVEEFVKIL 101
Query: 167 RSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRKKL---KKQY 222
++G +L ++ A+ + ++ D V KT H IPS G+ + + + +
Sbjct: 102 SAIGYYKLKFEIKAVKLKSGTSVKRDGYSVIALKTDHNIPSIGFALVEDERPGRFDRDKA 161
Query: 223 IHLK---GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNAD 267
I L G KL G VE+ I+S E V ++GDT L+ A
Sbjct: 162 IALGVPVGPLFSKLHHGGSVEVDGNIISAEDVVGEPRPGRTVVYSGDTRP--CLDVLEA- 218
Query: 268 ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++ A +LI ++T DD ++ A++ H+ E AK K ++LTH SSRY
Sbjct: 219 SVGADLLIHDSTLADD--MLDWAKEAMHSTAGEAAALAKKAGVKKLVLTHISSRY 271
>gi|260598692|ref|YP_003211263.1| ribonuclease Z [Cronobacter turicensis z3032]
gi|260217869|emb|CBA32408.1| Ribonuclease Z [Cronobacter turicensis z3032]
Length = 324
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 30/239 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P I E +E + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPKGIAEFIETTLRLSGSWTSYPLSVH 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ G+ ++ +++ V F H + GY I K LK G +
Sbjct: 139 EIT--EGQLFD-DSELTVTAFPLTHPVECYGYRIEEHDKPGALDAARLKAAGVAPGPLFQ 195
Query: 232 KLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+LK+ G +T D + +P ++A GDT P+ R ++
Sbjct: 196 QLKR-GETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTAP----TPQAVALARDVDVMVH 250
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
T L+ M+ E A GH+ + AK K +++THFSSRY ED ++ + + Q+
Sbjct: 251 ETTLEAAMA-EKANGRGHSTTQQAATVAKDAGAKRLVMTHFSSRYGAEDCQRLLAECQA 308
>gi|352104841|ref|ZP_08960561.1| ribonuclease Z [Halomonas sp. HAL1]
gi|350598626|gb|EHA14737.1| ribonuclease Z [Halomonas sp. HAL1]
Length = 320
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 111/245 (45%), Gaps = 35/245 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP +AS G+ + P TI P IK +E E + + LD
Sbjct: 58 IFITHVHGDHCYGLPGILASAGMGGRQAPLTIVAPAGIKAWLEATCEATQLC--LPFVLD 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGY------------VIYLLRKKLKKQYIHL 225
+ D + E + I V ++ H PS Y V L +K + + +
Sbjct: 116 FIDSDELPSVEFES-ITVTTYRLSHRAPSYAYGFTETKVDAALDVDKLAQKGIPRGPLWG 174
Query: 226 KGKQIEKLKKSGVEIT--DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
+ KQ ++ G ++ D +L +V GD +L + A++L+ EAT
Sbjct: 175 QLKQGFDVEFEGEQLKSHDYLLFKNKPRKVVIAGDNDQPDLLGEA---CVGAQVLVHEAT 231
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQAV 331
+ +EM+ + A GH++ + A+ ++ ++LTHFS RY IEDIRQ
Sbjct: 232 YT-EEMA-QKAGDVGHSYAKLVAAFAETVQLPNLVLTHFSPRYQLNPHASPSIEDIRQEA 289
Query: 332 LKLQS 336
L++ S
Sbjct: 290 LRVYS 294
>gi|422010256|ref|ZP_16357237.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
gi|414091559|gb|EKT53242.1| binuclear zinc phosphodiesterase [Providencia rettgeri Dmel1]
Length = 304
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTI-FVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P I + P +K+ +E + + S+ + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGATDPLIVYGPKGLKQYIETVLTV--SVSYMTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQIE 231
+V ++ G+ ++ +++V + H + GY I K+ + L +G ++
Sbjct: 117 IVEIEAGQLFD-DGELIVTAYALDHRVECYGYRIEEHPKRGALDAVKLANDNIPRGPWMQ 175
Query: 232 KLKKS---------GVEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK V D + P +A GDT T + + RNAD ++I
Sbjct: 176 ALKAGETIVLDDGRTVNGADYLGEPIPGKIIAIFGDTQPTEQALELARNAD-----VMIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E T L E + + A + GH+ + E A+ K + TH S RY EDI + + + Q+
Sbjct: 231 ETT-LAAEFA-QKANERGHSTTVQAAELARAAGVKRFIATHLSGRYTSEDIPKLLAECQA 288
>gi|378581464|ref|ZP_09830111.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
gi|377815971|gb|EHT99079.1| RNase BN [Pantoea stewartii subsp. stewartii DC283]
Length = 303
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L P T++ P +K VE + S + L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSMAGLTTPMTVYGPAGLKAFVETALSLSSSY--TDYPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V + GE + + V + +H I GY I +L +LK + + +G
Sbjct: 116 IVEIAAGEVLD-DGEFRVTAWPMNHTIACFGYRIEQHDKPGFLDAPRLKAEGVP-RGPWY 173
Query: 231 EKLKK------------SGVEITDIILSPEV-----AFTGDTT-SEFMLNPRNADALRAK 272
++LK+ +G E L P V A GDT ++ L A
Sbjct: 174 QQLKQGDTITLEDGRTVNGAE----YLGPPVKGKTLAIFGDTAPTDVALQL----AAGVD 225
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
+++ E T +E E A GH+ + AK K ++ THFSSRY D+ + +
Sbjct: 226 VMVHETTL--EEALAEKANGRGHSTTLQAATVAKQAGAKRLIATHFSSRYLARDMARLLA 283
Query: 333 KLQSKVSAKVVPLTE 347
+ Q ++ P TE
Sbjct: 284 ECQ-----RIFPDTE 293
>gi|421492448|ref|ZP_15939808.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455738357|ref|YP_007504623.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
gi|400193055|gb|EJO26191.1| ELAC [Morganella morganii subsp. morganii KT]
gi|455419920|gb|AGG30250.1| Ribonuclease Z [Morganella morganii subsp. morganii KT]
Length = 305
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 49/274 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G + P + + +FITH H DHI GLP + SR + + P T+F P
Sbjct: 36 FDCGEGTQHQILKSPVKIPKLEKIFITHLHGDHIFGLPGLLCSRSMGGCEEPLTLFGPQG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+ + VE + S + L+++ +D + V + H + S GY I
Sbjct: 96 LAQFVETALTLSGSY--LTFPLEIIEIDEEGVIYDDGQLKVSAYSLKHPVISYGYRIEEH 153
Query: 212 ----YLLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VAFTG 253
L ++LK + + G ++ LK+ G E+T D + P+ + G
Sbjct: 154 DKPGALDAQRLKAEGVP-GGPWMQTLKQGG-EVTLDDGRVICGADYLGEPQRGRHLVIFG 211
Query: 254 DTT-SEFMLN-PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT E L +NAD +++ EAT LD M+ E A GH S ++ A R+
Sbjct: 212 DTAPCENALKLAQNAD-----VIVLEAT-LDGTMT-EKANSRGH---SSTVQTATLARDA 261
Query: 312 AV---LLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
V + THFS RY ED + + Q+ A V
Sbjct: 262 GVGTLIATHFSGRYSEEDCERLLRGCQAIFPATV 295
>gi|329297123|ref|ZP_08254459.1| ribonuclease Z [Plautia stali symbiont]
Length = 303
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 37/251 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + L +P T++ P +++ V+ + S L+
Sbjct: 58 IFITHLHGDHIFGLPGLLTSRSIAGLTEPVTLYGPKGLRQFVDTALSLSGSY--TGYPLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+V ++ G + + V + +HV+ GY I +L +LK + + +G
Sbjct: 116 IVEIEAGPVLD-NGEFRVIAYALNHVVECYGYRIEQHDKPGFLDAPRLKAEGVP-RGPWY 173
Query: 231 EKLKKS-------GVEITDI-ILSPE-----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ LK+ G EI L P +A GDT +E L A A +++
Sbjct: 174 QDLKQGKRITLEDGREINGADYLGPATKGKVLAIFGDTGPTEVALQL----AANADVMVH 229
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E T + +E A GH+ + A+ K ++ THFSSRY +D + + + QS
Sbjct: 230 ETTL--EAAMVEKANGRGHSTTVQAASVAQRAGAKRMIATHFSSRYLSQDRERLLAECQS 287
Query: 337 KVSAKVVPLTE 347
V P TE
Sbjct: 288 -----VFPATE 293
>gi|73662558|ref|YP_301339.1| hypothetical protein SSP1249 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418576116|ref|ZP_13140262.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|123642642|sp|Q49XV1.1|RNZ_STAS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|72495073|dbj|BAE18394.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325178|gb|EHY92310.1| hypothetical protein SSME_13180 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 306
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 54/283 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK +E + S +LN + +++ +N+ V +H IPS GY I
Sbjct: 96 GIKAYIETTLRLSES----KLNYPITYIEIENHLSYQNNGFNVEAHMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKG------------KQIEKLKKSGVEIT------DIILSPEVAFTGD 254
K LK K E + +G+ D + P +A GD
Sbjct: 152 APYTSGKIDVSALKEIGLEPGPKYQDVKNNETFEYNGIIYNSKDFKGDAVKGPVIAIFGD 211
Query: 255 TTSEFMLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEI---IENAKWIR 309
T + +N + A A +++ E+T+++ + S+ A + H+H+ ++ IENA
Sbjct: 212 T-----MPCQNEEIIADHANVMVHESTYIEGDKSL--ANNYHHSHIEDVFTLIENA---H 261
Query: 310 NKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352
L+TH S+RY IE++ L+S +P T FK V
Sbjct: 262 VDYSLITHMSNRYTIEEVETISKSLKS------LPTTPPFKFV 298
>gi|222478515|ref|YP_002564752.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
gi|254808639|sp|B9LQT0.1|RNZ_HALLT RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222451417|gb|ACM55682.1| ribonuclease Z [Halorubrum lacusprofundi ATCC 49239]
Length = 310
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + +P TI PP
Sbjct: 35 FDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
++D+ L +H + + + ++ GE + VR F+T H SQGYV+
Sbjct: 95 EDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E S VE ++ P + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGEPVEAEDGSIVEPDQVVGPPRPGRKFVYTADT- 211
Query: 257 SEFMLNPRN---ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +L+ +ATF DD + A+ H+ E A+ K +
Sbjct: 212 -----RPREGTVAVAEDADLLVHDATFADDME--DRARDTAHSTGREAGSVAERAGAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|296109876|ref|YP_003616825.1| ribonuclease Z [methanocaldococcus infernus ME]
gi|295434690|gb|ADG13861.1| ribonuclease Z [Methanocaldococcus infernus ME]
Length = 309
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 38/235 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S + I+ P IKE V E+ ++ G + +
Sbjct: 57 IFITHLHGDHILGIPGIIQSLSFMGRTQKLEIYGPKGIKEIV----EMAKNFGYNCIEYE 112
Query: 178 LVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ ++ + E++ D + T H IPS Y+ ++K K K+ I + G
Sbjct: 113 VEVKEIKKNKEVKILEEKDFCFYAYPTKHYIPSYAYIFKEIKKPRLDINKAKELGIKV-G 171
Query: 228 KQIEKLKKSGVEITDI----------ILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
++KLK+ G+ + +I +L P+ VA++GDT +F L +N D
Sbjct: 172 PDLKKLKE-GIPVKNIHGETIFPEQVLLPPKRGICVAYSGDTLPIEDFALFLKNLD---C 227
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+LI EATF E S+ A++ H+ + + K + + ++LTH S+RY E+
Sbjct: 228 SLLIHEATFDSSEKSL--AEETYHSTVEDAYRIFKLSQAEKLILTHISARYDKEE 280
>gi|339010408|ref|ZP_08642978.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
gi|338772563|gb|EGP32096.1| ribonuclease Z [Brevibacillus laterosporus LMG 15441]
Length = 314
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DH+ GL +ASR L + T++ P I E V+ + I S +++ L
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIMRI--SPVHLQYPL 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
+ ++ G YE + IVV K H +P+ Y + + +L K+ KG
Sbjct: 116 IIKVVEEGIIYE-DDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKEAGIPKGPMY 174
Query: 231 EKLKKSG-VEI--------TDIILSPE----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+LK G V++ D + P+ VAF+GDT + M+ A A +L+
Sbjct: 175 AQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRL----AQGADMLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
E+T++ + E A++ GH+ + E A K +LLTH S RY IED
Sbjct: 231 ESTYVHQHL--ELAERSGHSTAKQAAEIAVAAEAKGLLLTHLSPRYDIED 278
>gi|421874708|ref|ZP_16306310.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
gi|372456383|emb|CCF15859.1| ribonuclease Z [Brevibacillus laterosporus GI-9]
Length = 314
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DH+ GL +ASR L + T++ P I E V+ + I S +++ L
Sbjct: 58 IFITHLHGDHLYGLIGMLASRSLRGAETGGITLYGPKGIDEYVQAIMRI--SPVHLQYPL 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
+ ++ G YE + IVV K H +P+ Y + + +L K+ KG
Sbjct: 116 IIKVVEEGIIYE-DDTIVVEAAKVKHRVPAFAYSMTEKPRPGAFKIELAKEAGIPKGPMY 174
Query: 231 EKLKKSG-VEI--------TDIILSPE----VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+LK G V++ D + P+ VAF+GDT + M+ A A +L+
Sbjct: 175 AQLKAGGTVQLEDGRVFHGKDFVHPPQPGLKVAFSGDTIPCQNMVRL----AQGADMLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
E+T++ + E A++ GH+ + E A K +LLTH S RY IED
Sbjct: 231 ESTYVHQHL--ELAERSGHSTAKQAAEIAVAAEAKGLLLTHLSPRYDIED 278
>gi|345006121|ref|YP_004808974.1| ribonuclease Z [halophilic archaeon DL31]
gi|344321747|gb|AEN06601.1| Ribonuclease Z [halophilic archaeon DL31]
Length = 309
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + + ++H H DH+ G+P V + + P I VPP
Sbjct: 35 FDCGEGTQRQMMRFGTGFDVDHLLVSHLHGDHVLGIPGLVQTWDFQERESPLAIHVPPDS 94
Query: 156 KEDVEKLF-EIHRSLGNV----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
+ +E L I + G E+ VA+D E YE VR FKT H S GY
Sbjct: 95 RRQIENLIGAIGHNAGFPIRIHEVTPGSVAIDA-EEYE------VRSFKTEHRTTSMGYA 147
Query: 211 IY-------LLRKKLKKQ--------YIHLKGKQIEKLKKSGVEITDIILSP-----EVA 250
+ +R+K +K+ Y L + +L+ V +D ++ P +
Sbjct: 148 LVEDDRPGRFMREKAEKELGIPPGPAYGKLHAGESVELEDGHVIDSDRVVGPPRPGRSLV 207
Query: 251 FTGDT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+TGDT T + P +LI +ATF D E A+ GH E E A
Sbjct: 208 YTGDTRPIQATVDVTEEP--------DLLIHDATFDDSEAG--RARSTGHATAREAGEIA 257
Query: 306 KWIRNKAVLLTHFSSRY 322
+ K + LTH SSRY
Sbjct: 258 ARMGAKRLALTHISSRY 274
>gi|11498544|ref|NP_069772.1| ribonuclease Z [Archaeoglobus fulgidus DSM 4304]
gi|41017520|sp|O29323.1|RNZ_ARCFU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2649658|gb|AAB90300.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 306
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GL + + L N + + V E + LFE + G +LN D+
Sbjct: 58 IFITHLHTDHFIGLFGLIETMSL-NERSRELNVYSPRAEVLRALFE---AFGYDQLNYDI 113
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQY------IH 224
++ + E++ D V F+T H++ S GY I R+K +K+ ++
Sbjct: 114 RVRELKDGEEVKFDGFKVVAFRTEHIVKSVGYAIIENDRRGKFNREKAEKELGIPPGPLY 173
Query: 225 LKGKQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
K + E + G IT D++L + V +TGD+ T + RNAD ILI
Sbjct: 174 AKLARGESIVWKGRTITPDMVLGEKRRGRKVVYTGDSRPTKRTVEIARNAD-----ILIH 228
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+A+F E + A + GH+ E E A+ K ++LTH S+RY
Sbjct: 229 DASF--KEELKDWAIESGHSTAKEAAEVAREANVKKLILTHISTRY 272
>gi|336234790|ref|YP_004587406.1| ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
gi|335361645|gb|AEH47325.1| Ribonuclease Z [Geobacillus thermoglucosidasius C56-YS93]
Length = 348
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P I+ +E + + ++ +L
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQTFIETSLSVSST--RLKYDLQ 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
+V ++ G +E +V + H I S G+ + LL KL+ Q
Sbjct: 118 IVEIEEGIIFEDERFLVTAK-QLDHGILSYGFRVVEKDLPGTLLVDKLQALGIRPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ + P+ VA GDT A A +L+ E
Sbjct: 177 QIKL-GKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR---YCEASVELAAEADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
ATF ++ ++ H + H+ ++ E AK R K ++LTH SSRY E
Sbjct: 233 ATFAREDSALAH--DYFHSTTAQAAEVAKRARAKKLILTHISSRYQGE 278
>gi|429105458|ref|ZP_19167327.1| Ribonuclease Z [Cronobacter malonaticus 681]
gi|426292181|emb|CCJ93440.1| Ribonuclease Z [Cronobacter malonaticus 681]
Length = 324
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 30/239 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLHVH 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ G+ + +I+V + H + GY I K LK G +
Sbjct: 139 EIT--EGQLSD-DGEIIVTAYPLTHPVECYGYRIEEHDKPGALDAARLKAAGVTPGPLFQ 195
Query: 232 KLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+LK+ G +T D + +P ++A GDT P+ + R ++
Sbjct: 196 QLKR-GETVTLPDGRTVCGADYLSAPRPGKKIAIFGDTGP----TPQAVNLARDVDVMVH 250
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
T L+ M+ E A GH+ + A+ K +L+THFSSRY ED ++ + + Q+
Sbjct: 251 ETTLEAAMA-EKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYSAEDCQRLLAECQT 308
>gi|375082902|ref|ZP_09729944.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
gi|374742400|gb|EHR78796.1| ribonuclease Z [Thermococcus litoralis DSM 5473]
Length = 294
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 40/240 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP ++ P E ++ + G + D
Sbjct: 45 IFITHFHGDHYLGLMSLIQTMTLWNREKPLHVYGPKYTFEFIQNYLKS----GFFRPSFD 100
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------GK 228
+ ++GE D + FK H +P+ GYV ++K K+ L G
Sbjct: 101 IHVHELGEARLKFGDYEIWSFKVEHGVPALGYV---FKEKDKRGSFDLDKIRELGLKPGP 157
Query: 229 QIEKLKKSG--------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKIL 274
+++L+ G + + D+ SP +V +TGDT L AD +L
Sbjct: 158 WMKELETKGKIEIDGKVIHLEDVTGSPKRGAKVVYTGDTEPCERVKLFSEKAD-----VL 212
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
I EAT+L +E E H+ + E E AK + K ++L H + RY E+ +Q KL
Sbjct: 213 IHEATYLSEEDRGESY----HSTVPEACEVAKKAKAKLLVLFHRAPRYTYEEYKQGAEKL 268
>gi|448482783|ref|ZP_21605554.1| ribonuclease Z [Halorubrum arcis JCM 13916]
gi|445821069|gb|EMA70865.1| ribonuclease Z [Halorubrum arcis JCM 13916]
Length = 310
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H N + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHNPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVEAAEDADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|312110329|ref|YP_003988645.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
gi|311215430|gb|ADP74034.1| ribonuclease Z [Geobacillus sp. Y4.1MC1]
Length = 309
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P I+ +E + + ++ +L
Sbjct: 60 IFITHLHGDHIFGLPGLLGSRSFQGGETPLTVYGPKGIQAFIETSLSVSST--RLKYDLQ 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
+V ++ G +E +V + H I S G+ + LL KL+ Q
Sbjct: 118 IVEIEEGIIFEDERFLVTAK-QLDHGILSYGFRVVEKDLPGTLLVDKLQALGIRPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ + P+ VA GDT A A +L+ E
Sbjct: 177 QIKL-GKMVQLEDGTVIDGRHFVGPPQKGRIVAILGDTR---YCEASVELAAEADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
ATF ++ ++ H + H+ ++ E AK R K ++LTH SSRY E
Sbjct: 233 ATFAREDSALAH--DYFHSTTAQAAEVAKRARAKKLILTHISSRYQGE 278
>gi|373856736|ref|ZP_09599480.1| ribonuclease Z [Bacillus sp. 1NLA3E]
gi|372453715|gb|EHP27182.1| ribonuclease Z [Bacillus sp. 1NLA3E]
Length = 311
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 101/232 (43%), Gaps = 26/232 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + I+ P +KE + + ++ ++ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGETEVIIYGPKGLKEYITVSLSVSQTY--LKYPLK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
++ +D G +E +V H IPS GY I LL KL + I K I
Sbjct: 117 VIEIDEGIIFE-DEQFIVETHVLEHGIPSYGYRIIEKDRPGTLLADKLAEAGI--KPGPI 173
Query: 231 EKLKKSGVEIT--DIILSPEVAFTGDTTS----EFMLNPRNAD-----ALRAKILITEAT 279
K K+G +T D + F G T + + R D A A +L+ EAT
Sbjct: 174 YKKIKNGENVTTEDGMFIKACEFLGQTLKGRIVTILGDTRQCDHAAKLATDADLLVHEAT 233
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
F E S+ + H TH + I AK K + LTH SSRY E + V
Sbjct: 234 FSKGEKSLAYDYFHSTTHQAAKI--AKRAGVKKLCLTHISSRYDREAWNELV 283
>gi|407979759|ref|ZP_11160567.1| ribonuclease Z [Bacillus sp. HYC-10]
gi|407413584|gb|EKF35281.1| ribonuclease Z [Bacillus sp. HYC-10]
Length = 309
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPRGIKAFVNAALSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ +D G +E + V + H +P+ GY + L + LKK Y
Sbjct: 117 IIEIDEGIVFE-DDTFQVEAKRVSHGVPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK + L+ ++ TD + P+ VAF+GDT +NAD +L+
Sbjct: 176 KLKNGETVTLEDGRRIDGTDYLEPPKKGRIVAFSGDTRLCENITRLAKNAD-----VLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
EATF ++ + A + H+ + + A+ K ++LTH S+RY E+ + +L
Sbjct: 231 EATFSKEDAEL--AYHYYHSTTEQAAKTAQEAGVKKLILTHISARYQGEESLKQLL---- 284
Query: 337 KVSAKVVPLTEGFKSVYT 354
K + + PLTE ++
Sbjct: 285 KEARDIFPLTEAAHDFFS 302
>gi|386002471|ref|YP_005920770.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
gi|357210527|gb|AET65147.1| Ribonuclease Z [Methanosaeta harundinacea 6Ac]
Length = 305
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 41/249 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R T + + +FITH H DHI G+P + + + P TI PP
Sbjct: 34 FDCGEGTQRQMMRAKTGMMSLDTIFITHHHADHILGIPGLLETMAFQGRRDPVTIAGPPR 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E VE + + + + + L+ G+ R+ + +T H IPS GY L
Sbjct: 94 TSEVVELFGRL--CYYSRKFPVRALELEPGDVLR-RDGYEIEAVRTSHSIPSLGYC---L 147
Query: 215 RKKLKKQYIHLK---------GKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+ + + + G +L++ G VE+ + PE + +TG
Sbjct: 148 REDTRPGRFNRERASALGIPPGPLFGRLQRGGAVEVGGRTVRPEEVMGPPRPGRKIVYTG 207
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT P +A R L+ LDD M+ + A + HT E A+ + +
Sbjct: 208 DTRP----TPEVEEASRGADLLIHDGSLDDGMA-DWAAETMHTTAGEAARLAERAGARRL 262
Query: 314 LLTHFSSRY 322
+LTH SSRY
Sbjct: 263 VLTHISSRY 271
>gi|84489223|ref|YP_447455.1| ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
gi|84372542|gb|ABC56812.1| putative ribonuclease Z [Methanosphaera stadtmanae DSM 3091]
Length = 281
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 117/255 (45%), Gaps = 53/255 (20%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G + I + + ++ITH H DHI GLP V S +P I+ P
Sbjct: 4 FDCGEATQKQIMEAGISPMKIDDIYITHLHGDHILGLPGIVQSLAFRGRTRPLHIYGPRG 63
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVI 211
I E ++ + R +G + +L+ ++ G Y+ +ND + K H + Y I
Sbjct: 64 INELIDHI----RHMGFYTIGYELITHEIEDDGILYQ-QNDFRILSRKMKHTVVDYAYKI 118
Query: 212 YLLR--KKLKKQYIHLK---GKQIEKLKKSGVEIT--DIILSPE-----------VAFTG 253
LR K L+++ I L G KL ++G E+T I+ PE V F+G
Sbjct: 119 EQLRQPKFLRQKAIELGIPPGPLFGKL-QAGKEVTVDGKIIKPEQVLGPPREGVKVVFSG 177
Query: 254 DTT-SEFMLN-PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT E M++ N D +LI EATF D E A ++GHT + E+A I K
Sbjct: 178 DTIPQESMIDFAENVD-----VLIHEATFTKDIK--EKAFENGHT----VAEDAAVIAKK 226
Query: 312 A----VLLTHFSSRY 322
A ++LTH S+RY
Sbjct: 227 ANVEQLILTHLSNRY 241
>gi|402083277|gb|EJT78295.1| hypothetical protein GGTG_03396 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 379
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 111/313 (35%), Gaps = 71/313 (22%)
Query: 81 YTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRG 140
Y + G S T +IP+L D G C + ++ +F+THGH DH +P +V
Sbjct: 53 YVLTGRSRAAWHTSFVIPQLNLLLDAGLCVNK-VRPKHIFLTHGHSDHTLLVPAFVDRDD 111
Query: 141 LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD----------------------- 177
P I+ P I V+ L + D
Sbjct: 112 R-----PDIYCPVEIAGKVDAFINAKTILNSRGDTADHGLGGGAGGPKEEEEEEGVDGEW 166
Query: 178 ---------LVALDVGETYEMR----------NDIVVRPFKTHHVIPSQGYVIYLLRKKL 218
LD T +R I F H P G+V ++L
Sbjct: 167 DGKGKRPRGATRLDTHVTSGLRASDTVTLARARTITATAFDCDHTTPCLGFVFSQTSRRL 226
Query: 219 KKQYIHLKGKQIEKLKKSGVEITDIILSPEVAF--------------------TGDTTSE 258
K ++ L +++ L+++GV++T +P AF GD +S
Sbjct: 227 KAEHQGLGAAELKALRRAGVDVTAPHSTPVFAFLGDTTAKVLAAAAAVTTTADDGDGSSS 286
Query: 259 FMLNPRNADALRAKI--LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+ LR I +ITE +FL +E A + HT +++ + +L
Sbjct: 287 TESAAQWGRWLRGGIPVVITECSFL-EERHRAQADKTKHTIWTDLEPVVRRWPATTFVLI 345
Query: 317 HFSSRYHIEDIRQ 329
HFS RY +++R+
Sbjct: 346 HFSLRYEDDEVRR 358
>gi|251796637|ref|YP_003011368.1| ribonuclease Z [Paenibacillus sp. JDR-2]
gi|247544263|gb|ACT01282.1| ribonuclease Z [Paenibacillus sp. JDR-2]
Length = 309
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 47/266 (17%)
Query: 97 IPELKCA---FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK 145
+P+ C+ FD G R P + + +F+TH H DH G+P +++R
Sbjct: 26 LPDPDCSLWMFDAGEGTQHQLMRTPLKLNKLEALFVTHLHGDHTYGIPGLLSTRSYVGGN 85
Query: 146 PP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHV 203
P +F PP I+E +E +L + L+ ++ +V E + + V H
Sbjct: 86 TPLQLFGPPGIREMIETAL----TLSSSRLDYEITYHEVSEGVVYKTERYTVEALPLEHR 141
Query: 204 IPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKKSGVEIT----DIILSPEVA--- 250
+P GY I K L+ G ++KK G ++T +IL+ +VA
Sbjct: 142 VPCFGYRITECESPGKLNVERLQQLGVPAGPLFGRIKK-GEDVTLPDGTLILAADVAGKP 200
Query: 251 -------FTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEI 301
GDT + +NAD +L+ EATF + E A +GH+ E
Sbjct: 201 QCGRIITIAGDTKPCDNALRLAQNAD-----LLVHEATFAAGQE--EKAHLYGHSTTVEA 253
Query: 302 IENAKWIRNKAVLLTHFSSRYHIEDI 327
A+ K +++THFS+R+ ED+
Sbjct: 254 ATTARDANAKRLIMTHFSTRFVDEDL 279
>gi|298674167|ref|YP_003725917.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
gi|298287155|gb|ADI73121.1| ribonuclease Z [Methanohalobium evestigatum Z-7303]
Length = 304
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 108/250 (43%), Gaps = 43/250 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T + + +FITH H DH+ G+P + + P P
Sbjct: 34 FDCGEGAQQQMMRARTGMMSLSSIFITHFHADHVLGIPGLLQTMSFQGRTEPLYIYGP-- 91
Query: 156 KEDVEKLFEIHRSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
E ++ +I +LG +L ++ V L G+ E +N ++ KT H + S GY L
Sbjct: 92 -EKIDVFIQILTALGYCQLGYEIKTVELKPGDIIE-KNGYHIKALKTEHGVKSIGYS--L 147
Query: 214 LRKKLKKQYIHLK--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
+ K ++ K G KL+K VE+ + PE V ++G
Sbjct: 148 VENKRPGKFDRDKAVSLGVPPGPLFSKLQKGNPVEVDGRTVHPEEVVGEPRPGRTVVYSG 207
Query: 254 DTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
DT E + N +L A +LI + + LDD S E A + H+ SE E AK
Sbjct: 208 DTRPCEDVFNA----SLEADVLIHDGS-LDDSQS-EWAAESMHSTASEAAELAKKAGVIK 261
Query: 313 VLLTHFSSRY 322
++LTH SSRY
Sbjct: 262 LVLTHISSRY 271
>gi|336477299|ref|YP_004616440.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
gi|335930680|gb|AEH61221.1| ribonuclease Z [Methanosalsum zhilinae DSM 4017]
Length = 304
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R T + VFITH H DHI GLP + + KP I+ P +KE I
Sbjct: 46 RARTGMMSLTSVFITHFHADHILGLPGLIQTMSFQGRTKPLVIYGPAKVKE----FACIL 101
Query: 167 RSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK---KQ 221
++G L ++ A++V G+ + R+ V+ KT H +PS GY + + K +
Sbjct: 102 SNIGYYNLKFEIRAVEVHPGDIIK-RDGYSVKILKTEHSVPSVGYALVEDSRPGKFNRDR 160
Query: 222 YIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNA 266
I L G KL+ VE+ ++SP+ + ++GDT R +
Sbjct: 161 AIELGVPVGPLFSKLQNGIPVEVEGKVISPDEVIGPSRSGRTIVYSGDT--------RPS 212
Query: 267 DALR-----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
D +R A +LI EAT D+++ + A + HT E + A K ++LTH SSR
Sbjct: 213 DDVRRISKGADLLIHEATLADEKL--DWAIESMHTTAGEAAKLAAEAEVKKLILTHISSR 270
Query: 322 Y 322
Y
Sbjct: 271 Y 271
>gi|284162424|ref|YP_003401047.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
gi|284012421|gb|ADB58374.1| ribonuclease Z [Archaeoglobus profundus DSM 5631]
Length = 305
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 45/255 (17%)
Query: 100 LKCAFDIGRCPTRAI---QQNF----VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFV 151
++ FD G R + + F VFITH H DH G+ + + L + +FV
Sbjct: 31 IRLLFDCGEGTQRQMMIAKTGFKIHSVFITHLHTDHFIGIFGLIETMSLNERTERLRVFV 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELN--LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P KE+V+ + + R G LN +++ L G+ + + FKT H++PS GY
Sbjct: 91 P---KENVDFMKTLFRMFGYHNLNYPIEVYGLKDGDEVDF-GKFKILAFKTDHIVPSLGY 146
Query: 210 VIYLLRKKLKKQYIHLKGKQI---------EKLKKSGVEITDIILSPE-----------V 249
L+ + ++ K + + + ++ +EI I++P+ V
Sbjct: 147 A--LIERDRPGKFDRAKAEALGIPPGPLYSKLVRGEAIEINGRIITPDMVVGPKRRGRKV 204
Query: 250 AFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
+TGDT T + R+AD +LI +A+F D + A Q H+ E E AK
Sbjct: 205 VYTGDTRPTERTIEVARDAD-----LLIHDASFTSDLQ--DWAIQTKHSTAREAAEIAKR 257
Query: 308 IRNKAVLLTHFSSRY 322
+ ++LTH S+RY
Sbjct: 258 ANVRQLILTHISARY 272
>gi|157692882|ref|YP_001487344.1| ribonuclease Z [Bacillus pumilus SAFR-032]
gi|157681640|gb|ABV62784.1| ribonuclease Z [Bacillus pumilus SAFR-032]
Length = 309
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVNATLSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
++ +D G +E + V + H IP+ GY + L+ + K+ G +
Sbjct: 117 IIEIDEGVVFE-DDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLYQ 175
Query: 232 KLKKSG---------VEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
KLK ++ TD + P+ VAF+GDT + A A +L+ EA
Sbjct: 176 KLKNGDTVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTR---LCENITRLAKDADVLVHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
TF ++ + A + H+ + + A+ K ++LTH S+RY E+ +L K
Sbjct: 233 TFGKEDADL--AYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALNQLL----KE 286
Query: 339 SAKVVPLTE 347
+ + PLTE
Sbjct: 287 ARDIFPLTE 295
>gi|194017036|ref|ZP_03055649.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
gi|194011642|gb|EDW21211.1| ribonuclease Z [Bacillus pumilus ATCC 7061]
Length = 309
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 32/249 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIKAFVSAALSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ +D G +E + V + H IP+ GY + L + LK+ Y
Sbjct: 117 IIEIDEGIVFE-DDTFQVEARRVSHGIPAYGYRVVEKDVPGALKAEDLKEIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK + L+ ++ TD + P+ VAF+GDT + A A +L+ EA
Sbjct: 176 KLKNGETVTLEDGRIIDGTDYLEPPKKGRIVAFSGDTR---LCENITRLAKDADVLVHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
TF ++ + A + H+ + + A+ K ++LTH S+RY E+ + +L K
Sbjct: 233 TFGKEDADL--AYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEEALKQLL----KE 286
Query: 339 SAKVVPLTE 347
+ + PLTE
Sbjct: 287 ARDIFPLTE 295
>gi|260663645|ref|ZP_05864534.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
gi|260551871|gb|EEX24986.1| ribonuclease Z [Lactobacillus fermentum 28-3-CHN]
Length = 310
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S + L +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+ D GE ++ + V + H I S GY + L+ +K+++ Y
Sbjct: 119 ELTGD-GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPSGPLYG 176
Query: 224 HLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK ++ L V+ D I +P+ VA GDT T + + AD +L+
Sbjct: 177 QLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD-----VLVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
EATF +E + H H + + + AK + +LL H S+RY
Sbjct: 232 EATFAKNEQRLAHNYYHSTSAQAATV--AKKAGAQRLLLNHISARY 275
>gi|150402080|ref|YP_001329374.1| ribonuclease Z [Methanococcus maripaludis C7]
gi|166991485|sp|A6VFJ7.1|RNZ_METM7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150033110|gb|ABR65223.1| ribonuclease Z [Methanococcus maripaludis C7]
Length = 310
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLMQSIAFQGRTKPLNIYGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIENILNVGYHSIDYPINVYEISAKSPEKIISSDNYEVFSFPVVHSVPALAYVFKQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK +E+ I++P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFNIELNGKIITPDDVTVPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+EF+ L+ LI EATF D+ ++A++ H+ +S+ + AK
Sbjct: 212 PLNEFAEFL------KELKCTTLIHEATF--DKSMDKNAKETLHSTVSDALNIAKLSGVN 263
Query: 312 AVLLTHFSSRY 322
V+LTH S+RY
Sbjct: 264 TVILTHISARY 274
>gi|448434420|ref|ZP_21586230.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
gi|445685336|gb|ELZ37691.1| ribonuclease Z [Halorubrum tebenquichense DSM 14210]
Length = 309
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ GLP V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRIFVSHLHGDHVLGLPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLRNL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYAVRAFETEHRTVSQGYVLAEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E + V+ ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGESVEAEDGTVVDPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR + A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPRESTVEAAADADLLIHDATFADD--MADRARDTAHSTGREAGSIAARANAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|429091717|ref|ZP_19154379.1| Ribonuclease Z [Cronobacter dublinensis 1210]
gi|426743659|emb|CCJ80492.1| Ribonuclease Z [Cronobacter dublinensis 1210]
Length = 286
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 34/241 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P IKE +E + S + L +
Sbjct: 41 IFITHLHGDHIFGLPGLLCSRSMAGCETPLDVYGPQGIKEFIETALRLSGSWTSYPLRIH 100
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIE 231
+ T + V F H + GY I K LK G +
Sbjct: 101 EI---TAGTVLDDDAFTVTAFALTHPVECYGYRIEERDKPGTLDAAALKAAGVTPGPLFQ 157
Query: 232 KLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
+LK+ G +T D + +P ++A GDT T++ R+ D L+
Sbjct: 158 QLKR-GETVTLDDGRTLCGADYLSAPRPGKKIAIFGDTGPTAQAAALARDVD------LM 210
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
T L+ M+ E A GH+ + A+ K +++THFSSRY D ++ + + Q
Sbjct: 211 VHETTLEAAMA-EKANGRGHSTTQQAATLAREAGAKRLVMTHFSSRYDAADCQRLLAECQ 269
Query: 336 S 336
+
Sbjct: 270 A 270
>gi|268591447|ref|ZP_06125668.1| ribonuclease Z [Providencia rettgeri DSM 1131]
gi|291313101|gb|EFE53554.1| ribonuclease Z [Providencia rettgeri DSM 1131]
Length = 304
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 37/251 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKP-PTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + T++ P +K +E + + S+ + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGATDLLTVYGPKGLKHYIETVLAV--SVSYMTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQIE 231
+V ++ G+ ++ +++V + H + GY I K + L +G ++
Sbjct: 117 IVEIEAGQLFD-DGELIVTAYALDHRVECYGYRIEGHPKSGALDAVKLANDNIPRGPWMQ 175
Query: 232 KLKKSGVEITDI-------------ILSPEVAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK + D I VA GDT T + + RNAD ++I
Sbjct: 176 ALKAGETIVLDDGRVVNGADYLGEPIPGKVVAIFGDTQPTEQALELARNAD-----VMIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E T L+ E + + A + GH+ + E A+ K + TH S RY EDI + + + QS
Sbjct: 231 ETT-LEAEFA-QKANERGHSTTVQAAELARAAGVKRFIATHISGRYVSEDIPRLLAECQS 288
Query: 337 KVSAKVVPLTE 347
V P TE
Sbjct: 289 -----VFPATE 294
>gi|418951515|ref|ZP_13503601.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
gi|375372488|gb|EHS76226.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-160]
Length = 306
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK V E+ +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYV----EMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGD 254
+ + LK +Y +K + + D + VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGQIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>gi|300710119|ref|YP_003735933.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|448297109|ref|ZP_21487157.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|299123802|gb|ADJ14141.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
gi|445580291|gb|ELY34677.1| ribonuclease Z [Halalkalicoccus jeotgali B3]
Length = 306
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ GLP + + + P + P
Sbjct: 35 FDCGEGTQRQMMRFSTGFSISAIFLTHVHGDHVLGLPGLLQTLDFNDRADPLVVHTPRGT 94
Query: 156 KEDVEKLF-EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ VE L + LG +++ + GE D ++ F+T H S GYV+
Sbjct: 95 RRTVEDLVGALDARLG---FPVEVREVAPGEVVRDGEDYEIQAFRTDHRTHSVGYVLVEA 151
Query: 215 RKKLKKQYIHLK---------------GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
+K + + G+ +E + ++ ++ SP V +TGDT
Sbjct: 152 DRKGRFDRERAEELGVPVGPAFGRLHAGEPVELADGTVIKPEQVVGSPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T E + +AD +LI +ATF DD E A++ GH+ E E A K +
Sbjct: 212 RPTEETVDASEDAD-----LLIHDATFGDD--WAERARETGHSSAREAGELAARTGVKRL 264
Query: 314 LLTHFSSRY 322
LTH SSRY
Sbjct: 265 ALTHISSRY 273
>gi|381184019|ref|ZP_09892696.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
gi|380316087|gb|EIA19529.1| ribonuclease Z [Listeriaceae bacterium TTU M1-001]
Length = 304
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 117/262 (44%), Gaps = 37/262 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P R + +FITH H DHI GLP ++SR + T++ PP I ++ E+
Sbjct: 48 RSPIRLSKLEKIFITHLHGDHIFGLPGLLSSRSFQGGETELTVYGPPGIALYIKDSLELS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK 219
S ++ L +V ++ GE + + VV + H I S GY + L KLK
Sbjct: 108 GS--HLTYPLQIVEVESGEIFSDKQWKVVCD-ELDHGIQSFGYRLMESAKPGSLDAAKLK 164
Query: 220 KQ-------YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RN 265
+ Y LK + L + PE + GDT P RN
Sbjct: 165 AEGVPAGPLYQELKEGKTVTLPDGRTIDGQAFIGPEQKGRIITIFGDTRQHKNELPLARN 224
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
AD I++ EATF + +E A+++ H+ +E AK K ++LTH SSRY
Sbjct: 225 AD-----IIVHEATF--EASKVEMAKEYMHSTTTEAAGLAKEADAKHLILTHISSRYD-- 275
Query: 326 DIRQAVLKLQSKVSAKVVPLTE 347
++A L L+ + + ++ P T+
Sbjct: 276 --KEASLGLRDE-ARQIFPNTD 294
>gi|289550723|ref|YP_003471627.1| ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|385784351|ref|YP_005760524.1| hypothetical protein SLUG_14070 [Staphylococcus lugdunensis
N920143]
gi|418414025|ref|ZP_12987241.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180255|gb|ADC87500.1| Ribonuclease Z [Staphylococcus lugdunensis HKU09-01]
gi|339894607|emb|CCB53889.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410877663|gb|EKS25555.1| ribonuclease Z [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 307
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPH 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S ++ + + +D G +Y N V +H I S GY +
Sbjct: 96 GIKAFVETTLSLSES--HLNYPITFIEIDDGFSYH-HNGFKVTAKVLNHGIVSYGYRVEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKKSGV-EITDIIL-----------SPEVAFTGDT 255
K LK G + +++K + E +II P +A GDT
Sbjct: 153 PTTPGKINVEALKALGLEPGPKYQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
+E ++ A A+++I EAT+++ + ++ A + H+H+ ++ + K
Sbjct: 213 KPCANEKII------AQGAQLMIHEATYIEGDKAL--ANNYHHSHIDDVFQLIHQAHVKQ 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI
Sbjct: 265 TLITHMSNRYNKEDIHH 281
>gi|312869010|ref|ZP_07729187.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
gi|311095436|gb|EFQ53703.1| ribonuclease Z [Lactobacillus oris PB013-T2-3]
Length = 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + R V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEAFHDRG-FTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK + V D I +P+ +A GDT T+ + ++AD +L+
Sbjct: 176 GQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQDAD-----VLV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF DE + A+ + H+ + E AK K +LL H S+RY
Sbjct: 231 HESTFAKDEAKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|259503099|ref|ZP_05746001.1| ribonuclease Z [Lactobacillus antri DSM 16041]
gi|259168965|gb|EEW53460.1| ribonuclease Z [Lactobacillus antri DSM 16041]
Length = 309
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 99/227 (43%), Gaps = 33/227 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + + V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEVFHDQG-FTVTAKKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK++ V D I +P+ V GDT T+ + R+AD IL+
Sbjct: 176 GQLKAGKEVTLADGRTVNGRDFIGAPQKGRIVTICGDTRKTANAVELARDAD-----ILV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF DE + A+ + H+ + E AK K +LL H S+RY
Sbjct: 231 HESTFAKDEAKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|134045752|ref|YP_001097238.1| ribonuclease Z [Methanococcus maripaludis C5]
gi|166991484|sp|A4FXT9.1|RNZ_METM5 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|132663377|gb|ABO35023.1| RNAse Z [Methanococcus maripaludis C5]
Length = 314
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 41/251 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DH+ G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHVLGIPGLLQSIAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIKNILNVGYHSIDYPINVYEISSKTSEKIISTDNYDVFSFPVVHSVPAVAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK VE+ I++PE V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGYNVELNGKIITPEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+EF AD L+ ILI EATF D+ ++A++ H+ + + + AK
Sbjct: 212 PLNEF------ADFLKELKCTILIHEATF--DKTMDKNAKETLHSTVHDALNIAKRSGAN 263
Query: 312 AVLLTHFSSRY 322
V+LTH S+RY
Sbjct: 264 TVILTHISARY 274
>gi|229916219|ref|YP_002884865.1| ribonuclease Z [Exiguobacterium sp. AT1b]
gi|259494134|sp|C4L3C2.1|RNZ_EXISA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|229467648|gb|ACQ69420.1| ribonuclease Z [Exiguobacterium sp. AT1b]
Length = 301
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 29/224 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
V++TH H DH+ GLP ++++R L P T++ P +K+ +E + S ++ L
Sbjct: 56 VWVTHLHGDHVFGLPGFLSTRSALDGTAPLTVYGPKGLKKWLEATLRVTGS--HLGYELT 113
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQY------IHL 225
+ G+T+ +++D +V K H PS G+ I +LR L ++ I+
Sbjct: 114 VTEYSDGDTF-IQDDHLVTVRKLEHRFPSFGFRIDGPEKPGMLRVDLVRELGVPSGPIYR 172
Query: 226 KGKQIEKLKKSGVE------ITDIILSPEVAFTGDTTSEFMLNPRN-ADALRAKILITEA 278
K+ ++ + G +T+ I VA GDT N R AD A +L+ EA
Sbjct: 173 TIKESDRFEFEGKWYDSKEYVTEPIPGKIVAILGDTIP--CENARKLADG--ADLLVHEA 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
TF++ E ++ A+++GH+ E A +++TH S+RY
Sbjct: 229 TFMEAEQAL--ARKYGHSTTREATALANACAVGKLIVTHISARY 270
>gi|116754237|ref|YP_843355.1| ribonuclease Z [Methanosaeta thermophila PT]
gi|116665688|gb|ABK14715.1| RNAse Z [Methanosaeta thermophila PT]
Length = 305
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 111 TRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170
T ++ + +F+TH H DHI G+P + + + P + P ++ I SLG
Sbjct: 49 TGMMRLSHIFLTHLHADHILGIPGLLETMAFQGRENPLVIAGPP---RTARMVSILNSLG 105
Query: 171 NVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL-LR--KKLKKQYIHL 225
+ ++ A+++ G+ M N V T H +PS GY++ +R + K++ I L
Sbjct: 106 CCTRDFEVRAMEMRPGDAVRM-NGYTVTAIATQHSVPSLGYMLLEDMRPGRFNKERAIEL 164
Query: 226 K---GKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADA 268
G +L+K VEI ++ PE + ++GDT T+E RNAD
Sbjct: 165 GVPVGPMFGRLQKGEIVEIDGRVVRPEDVLGAPRPGRKIVYSGDTRPTAEIEEASRNAD- 223
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+LI + DD +E A + HT E A + ++LTH SSRY
Sbjct: 224 ----LLIHDGALADD--MLEWAVETKHTTAGEAAALAARAGVRRLVLTHISSRY 271
>gi|435850902|ref|YP_007312488.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
gi|433661532|gb|AGB48958.1| ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
Length = 305
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 37/228 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+F+TH H DH+ G+P + + L +P I+ P +KE V+ + E LG +L+ +
Sbjct: 57 IFVTHFHADHMLGIPGLIQTMSFLGRTEPLYIYGPQWVKEFVKIISE----LGYYKLHFE 112
Query: 178 LVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK---LKKQYIHLK---GKQ 229
+ +++ G+ + RND + T H +PS GY + ++K +++ I L G
Sbjct: 113 VEVIEMAPGDIIK-RNDYSIHAIGTDHSVPSLGYALIEDQRKGRFEREKAIALGVPPGPL 171
Query: 230 IEKLKKSGVEI---------TDII--LSP--EVAFTGDT--TSEFMLNPRNADALRAKIL 274
KL SGV++ TD++ + P ++ +TGDT + R+AD +L
Sbjct: 172 FSKL-HSGVDVEVNGKLIRSTDVVGQVRPGRKIVYTGDTRPCQSILAVSRDAD-----VL 225
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
I ++T +D+ E A++ H+ SE AK + ++LTH SSRY
Sbjct: 226 IHDSTLGNDQS--EWAKESKHSTASEAAILAKEAGVRKLVLTHISSRY 271
>gi|448444601|ref|ZP_21589891.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
gi|445686014|gb|ELZ38355.1| ribonuclease Z [Halorubrum saccharovorum DSM 1137]
Length = 310
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 50/254 (19%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + + P TI PP
Sbjct: 35 FDCGEGTQRGMMRHGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDREDPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGN--------VELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ 207
+D+ L +H ++G+ E++ VALD + YE VR F+T H SQ
Sbjct: 95 GDDLHDL--VH-AVGHDPAFRIRIDEVSPGGVALDA-DGYE------VRAFETVHRTVSQ 144
Query: 208 GYVI-------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----E 248
GYV+ R K ++ + + G+ +E S VE ++ P +
Sbjct: 145 GYVLEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGSTVEPDQVVGPPRPGRK 204
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
+T DT AD A +L+ +ATF DD + A+ H+ E A+
Sbjct: 205 FVYTADTRPRENTVEAAAD---ADLLVHDATFADD--MADRARDTAHSTGREAGSIAERA 259
Query: 309 RNKAVLLTHFSSRY 322
K + L H SSRY
Sbjct: 260 DAKRLALVHISSRY 273
>gi|223995477|ref|XP_002287412.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976528|gb|EED94855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 619
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 120/278 (43%), Gaps = 45/278 (16%)
Query: 85 GVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL 144
G+ + +PEL A D G ++Q V +THGH DHIG LP++ + L
Sbjct: 333 GLGRSADASAYFLPELGIALDAG-LHVSSLQPKTVLLTHGHRDHIGALPVHASHDSL--- 388
Query: 145 KPPTIFVPPSIKEDVEKLF--EIHRSLGNVELNLD--LVALDVGETYEMRND-------- 192
I VP I++ V K E + G+V + L AL T +++
Sbjct: 389 ----ILVPEPIQKLVHKFLVAEAQLNYGDVTQTEEETLEALGGFNTMGVKDGTKIMLPKD 444
Query: 193 --------IVVRPFKTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVE--- 239
+ ++ F H +P+ Y ++ +++LKK+Y + ++ + ++ E
Sbjct: 445 KYTGSPTPLGIQVFAAPHKEGVPACSYGVFRRKQRLKKEYQSMSKSELGAVLRTKRETGK 504
Query: 240 ------ITDIILSPEVAFTGDTTSEFMLNPRNADAL-RAKILITEATFL---DDEMSIEH 289
IT+ + +TGDTT +L R + L K +I E TFL E+ +
Sbjct: 505 SQEDTSITESYDEGVLFYTGDTTIS-LLRERWREILPNYKYIIHEVTFLGPPSSELDVS- 562
Query: 290 AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
++ GHTH S++ + + H+S RY E++
Sbjct: 563 SEAKGHTHYSQLHPWICAFADTTFICVHWSLRYGREEV 600
>gi|124027542|ref|YP_001012862.1| metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
gi|123978236|gb|ABM80517.1| Metal-dependent hydrolase of beta lactamase, ElaC [Hyperthermus
butylicus DSM 5456]
Length = 302
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP + S G+ K P + P + + + F R L L
Sbjct: 58 IFITHLHGDHFFGLPGLLQSMGMLGRKTPLLVAGPRGLYGFLREAFRASRWLPG--FPLY 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-----KKQYIHLK-GKQIE 231
+ L+ GE + + + V F H IP+ GY + R+K K + + ++ G +
Sbjct: 116 VAELEPGEKLVLPSGLEVESFPVSHTIPAMGYRLVEPRRKPRINIEKARRLGIEPGPLLA 175
Query: 232 KLKKS-GVEITDIILSPE----------VAFTGDTTSEFMLNPRNADALR-AKILITEAT 279
KL++ V + I+ PE + +TGDT P +A R A +LI +AT
Sbjct: 176 KLQRGEPVTVAGRIVRPEEVVEEQPRAVIVYTGDTRP----CPTVVEAARNATVLIHDAT 231
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
F M+ E A + GH+ + A + ++L H S+RY D
Sbjct: 232 F-TSSMARE-AYEQGHSTARDAARAASTADARLLVLFHISARYETPD 276
>gi|261417831|ref|YP_003251513.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297529499|ref|YP_003670774.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|319767357|ref|YP_004132858.1| ribonuclease Z [Geobacillus sp. Y412MC52]
gi|261374288|gb|ACX77031.1| ribonuclease Z [Geobacillus sp. Y412MC61]
gi|297252751|gb|ADI26197.1| ribonuclease Z [Geobacillus sp. C56-T3]
gi|317112223|gb|ADU94715.1| ribonuclease Z [Geobacillus sp. Y412MC52]
Length = 307
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 118/253 (46%), Gaps = 41/253 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRAFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF E + A+ + H+ ++ E A+ K ++LTH SSRY Q LQ
Sbjct: 230 HEATFAAAEQRL--ARDYFHSTTTDAAEVARRAGAKRLILTHISSRY------QGAAALQ 281
Query: 336 SKVSAK-VVPLTE 347
A+ V P TE
Sbjct: 282 LVAEARSVFPNTE 294
>gi|205373950|ref|ZP_03226751.1| ribonuclease Z [Bacillus coahuilensis m4-4]
Length = 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 37/244 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P IKE + +I L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGESPVTVYGPRGIKEYILTSLKI----SGTYLKYP 114
Query: 178 LVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L L++ E+ + D R H +PS G+ I LL +KL+ I KG
Sbjct: 115 LHILEIEESGIIFEDDQFRVITALLEHGLPSYGFRIEEKDRPGELLVEKLESLGIP-KGP 173
Query: 229 QIEKLKK-SGVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
Q KLK +E++D + P+ V GDT ++ R+AD +
Sbjct: 174 QYRKLKALESIELSDGRIVHGIDVTGPKKQGRIVTILGDTRPCENALMLSRHAD-----V 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
L+ EATF + E A++ H+ + +E A K +LL H SSRY ED Q
Sbjct: 229 LVHEATF--STGNEEMAKEFYHSTSGQAVETAIRAGAKRLLLNHISSRYTKEDSEQLEKD 286
Query: 334 LQSK 337
QS+
Sbjct: 287 AQSR 290
>gi|448476244|ref|ZP_21603408.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
gi|445815793|gb|EMA65712.1| ribonuclease Z [Halorubrum aidingense JCM 13560]
Length = 310
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + +P TI PP
Sbjct: 35 FDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+D+ +L +H + ++ + + GE + VR F+T H SQGYV+
Sbjct: 95 ADDLHEL--VHAVGHDPAFHVRIEPVAPGEVALDADGYAVRAFETTHRTKSQGYVLDEAD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R K ++ + + K VE D ++ PE + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGTVVEPEQVVGPARPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A +L+ +ATF DD + A+ H+ E E A K +
Sbjct: 212 -----RPRQRTVEVAENADLLVHDATFADD--MADRARDTAHSTGREAGEIAARADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHVSSRY 273
>gi|442805116|ref|YP_007373265.1| ribonuclease Z [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442740966|gb|AGC68655.1| ribonuclease Z [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 304
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELN 175
+ V +TH H DH+ GLP + + G P I + PP +K+ VE L I L
Sbjct: 55 DAVLLTHYHGDHVAGLPGLLLTIGNSGRTEPLILMGPPGLKKVVEGLTVIAPEL---PYA 111
Query: 176 LDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKGK 228
L +V L + E R N +V+R H I Y ++L R+ K +K I ++
Sbjct: 112 LQIVELPEDKISENRLNGLVIRSIPADHTITCLSYCVFLKRQGKFDVEKAEKLSIPVR-- 169
Query: 229 QIEKLKKSGVEIT--------DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
KL ++G E+ +++L PE V + DT T + R+AD +
Sbjct: 170 -YYKLLQNGCEVKIGDRVIKPEMVLGPERKGIKVCYCTDTRPTESLVEFVRDAD-----L 223
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
LI E + +E E A Q H E E AK + + LTH+S
Sbjct: 224 LICEGMYGSNE-DFEKAAQKKHMTFPEAAEIAKKANVQRLWLTHYS 268
>gi|345019719|ref|ZP_08783332.1| ribonuclease Z [Ornithinibacillus scapharcae TW25]
Length = 307
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 30/232 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP ++SR + TIF P IKE V+ + S ++
Sbjct: 57 NKIFITHMHGDHIFGLPGLLSSRSFQGGEDELTIFGPKGIKEFVDTSLTL--SGTHITYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG-------- 227
L V ++ G+ +E V K H +PS G+ I K + Q LK
Sbjct: 115 LTFVEIEEGKIFE-DEQFSVYCKKLEHGVPSYGFRIEEKNKPGELQVDQLKAFGIPPGPI 173
Query: 228 -KQIEKLK----KSGVEIT--DII----LSPEVAFTGDTTSEFMLNPRNADALRA-KILI 275
+QI++ + + G ++ D I + +A GDT S RN + + +L+
Sbjct: 174 YRQIKENEVVTLEDGRKLNRKDFIGPDKIGRHIAILGDTRS----THRNHEFVNGVDVLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
EATF D+ + A+ + H+ + AK K +++TH SSRY E+I
Sbjct: 230 HEATF--DKEKVALAEDYYHSTTEQAAALAKKANVKRLVMTHISSRYQSEEI 279
>gi|304404445|ref|ZP_07386106.1| ribonuclease Z [Paenibacillus curdlanolyticus YK9]
gi|304346252|gb|EFM12085.1| ribonuclease Z [Paenibacillus curdlanolyticus YK9]
Length = 308
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 44/250 (17%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRS 168
P + + + +FITH H DH+ GLP +++R + P TI+ P +++ VE LF++ +
Sbjct: 50 PIKLNRIDRIFITHLHGDHVFGLPGLLSTRAYDGGVGPVTIYGPAGLQQMVECLFQLSGT 109
Query: 169 LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ 221
+ ++ V G ++ N V H IP GY + L KLK+
Sbjct: 110 Y--IGYDIQYVEAVEGVIFDDGN-YRVEAAALEHRIPCFGYRVIESPRPGRLDAGKLKEA 166
Query: 222 -------YIHLK---------GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRN 265
Y LK G++I+ +G I I V GDT
Sbjct: 167 GVPFGPLYGKLKAGEDITLPDGREIKSSDVTGACIPGRI----VTILGDTKP-------C 215
Query: 266 ADALR----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
A+A+R A +L+ EATF E A+ +GH+ + E AK + +++THFSSR
Sbjct: 216 ANAVRLAEHADLLVHEATFAAGLE--EKAELYGHSTTVQAAEAAKRAGARKLVMTHFSSR 273
Query: 322 YHIEDIRQAV 331
Y +ED Q V
Sbjct: 274 YELEDAVQLV 283
>gi|448427531|ref|ZP_21583846.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
gi|445678218|gb|ELZ30712.1| ribonuclease Z [Halorubrum terrestre JCM 10247]
Length = 310
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVEAAEDADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|160902038|ref|YP_001567619.1| beta-lactamase domain-containing protein [Petrotoga mobilis SJ95]
gi|160359682|gb|ABX31296.1| beta-lactamase domain protein [Petrotoga mobilis SJ95]
Length = 275
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 17/212 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+ +TH H+DHI GL V +R G N K I+ P + E L I + +
Sbjct: 44 IILTHSHVDHIAGLWGIVNTRNNAMGNRN-KKLEIYYPQGSENINEYLKFIGKMNKRLRY 102
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHV--IPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+D + + +T + N ++PFKT H S GY I RK+LK++Y LK +I+
Sbjct: 103 EIDFREITLSDTIPLNNKRFIKPFKTRHTPGETSFGYQILEQRKRLKEEYRELKESEIKD 162
Query: 233 LKKSGVE-ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQ 291
L + E I + + + +GD+ + P N A L+ E TF D+ + +
Sbjct: 163 LIINKKEDILENYTANILTISGDS----LPIPPNF-AKDCGTLLHECTFFDE----KDRK 213
Query: 292 QHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
HT L+E+ + K V++ H SSRY+
Sbjct: 214 IRNHTSLAELKNLINISKPKRVIIYHVSSRYN 245
>gi|315303944|ref|ZP_07874400.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
gi|313627682|gb|EFR96359.1| ribonuclease Z [Listeria ivanovii FSL F6-596]
Length = 306
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 112/252 (44%), Gaps = 34/252 (13%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R + + F+FITH H DHI GLP ++SR TI+ PP ++E +E +
Sbjct: 48 RSQIKLSKLEFIFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPPGVQEYIETSLRLS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
+ ++ + + V EM + + H + S GY I K+ LK
Sbjct: 108 GTRLTYKIIFEEIEPGVIFEDEM---FAITADELEHGMQSFGYRIVEKDKQGALNAAKLK 164
Query: 227 GKQIE------KLKKS-------GVEIT--DIILSPE----VAFTGD---TTSEFMLNPR 264
+E KLK G EI + I +P+ ++ GD T SEF L
Sbjct: 165 ADGVEPGPVFQKLKNGEIVTLPDGREIDGKNYIGNPQKGKIISIFGDTRATASEFRL-AE 223
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
NAD +L+ EATF D+ + A ++ H+ + E AK K ++LTH SSRY
Sbjct: 224 NAD-----VLVHEATFEGDKGKM--AAEYMHSTTVQAAELAKRAGVKKLILTHISSRYDR 276
Query: 325 EDIRQAVLKLQS 336
E + +++ +S
Sbjct: 277 EASKALLIEAKS 288
>gi|410461422|ref|ZP_11315073.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
gi|409925928|gb|EKN63128.1| ribonuclease Z [Bacillus azotoformans LMG 9581]
Length = 316
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 116/248 (46%), Gaps = 37/248 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IKE VE I S +++ ++
Sbjct: 61 IFITHLHGDHVFGLPGLLGSRSFQDGTSLLTIYGPRGIKEYVEVSLRI--SATHLKYPIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
+V ++ G +E + +V K H I S GY I L KLKK Q
Sbjct: 119 IVEIEDGVIFE-DHQFIVTAGKLEHGITSYGYRIVEKDLKGALEVDKLKKLGISPGPIYQ 177
Query: 222 YIHLKGKQIEKLKKSGVEITDI-ILSPE-----VAFTGDTTSEFMLNPRNAD-ALRAKIL 274
I G E L + G +I + + P+ +A GDT N + + A +L
Sbjct: 178 KIKAGG---EILLEDGTKINGVDFVGPDKPGRKLAILGDT----RFNQKAIELADDVDLL 230
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ EATF ++ +I + H T + + AK + KA++LTH SSRY DI A+L+
Sbjct: 231 VHEATFGKEDEAIAYDYFHSTTIGAARV--AKEAKAKALVLTHISSRYQGNDI-DALLEE 287
Query: 335 QSKVSAKV 342
+V + V
Sbjct: 288 AQEVFSNV 295
>gi|150401156|ref|YP_001324922.1| ribonuclease Z [Methanococcus aeolicus Nankai-3]
gi|166991483|sp|A6UUY8.1|RNZ_META3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150013859|gb|ABR56310.1| ribonuclease Z [Methanococcus aeolicus Nankai-3]
Length = 322
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 56/259 (21%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FI+H H DHI GL + S G +P I+ PP
Sbjct: 33 FDCGEGTQRQMIYTDISPMKINNIFISHLHGDHILGLAGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYV 210
IK +E + +I G +N + ++ M+ + + +H IP Y+
Sbjct: 93 IKNTIENILKI----GYHSINFKITVHEINSKKPMKIIDSEKYMAYAYPVNHSIPCYAYI 148
Query: 211 IYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE---- 248
+ K+ KK ++LK G ++ LK K+G I D++L P+
Sbjct: 149 L----KEKKKPQLNLKKAMELGVEVGPDLKSLKDGNEVKLKNGKIIYPNDVLLPPKDSMC 204
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
VA++GDT EF+ +++ +LI EATF + + +A + H+ + + +
Sbjct: 205 VAYSGDTMPIEDFGEFL------NSIGCTVLIHEATFGSSKKN--NAVETMHSTIEDAVN 256
Query: 304 NAKWIRNKAVLLTHFSSRY 322
K V+LTH S+RY
Sbjct: 257 IGKIACVDTVILTHISARY 275
>gi|448451148|ref|ZP_21592714.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
gi|445811037|gb|EMA61050.1| ribonuclease Z [Halorubrum litoreum JCM 13561]
Length = 310
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ PP
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVEAAKDADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|366089332|ref|ZP_09455805.1| ribonuclease Z [Lactobacillus acidipiscis KCTC 13900]
Length = 317
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 47/263 (17%)
Query: 96 IIPELK--CAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK 145
++PE+ FD G R R + +FITH H DHI GLP +++SR N
Sbjct: 26 LLPEINEVWLFDCGEATQHQILRTTIRPRKITKIFITHLHGDHIFGLPGFLSSRSFQNGD 85
Query: 146 PP---TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFK-T 200
P TI+ P I++ V+ + R+ +LN +++GE ++ ND FK
Sbjct: 86 DPTTLTIYGPAGIEDFVKTSLRVSRTKLAYKLNF----IELGEAGQIFENDRFKVSFKYL 141
Query: 201 HHVIPSQGYVI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIIL 245
H IP GY + L +KLK+ Y LK G+ + + TD I
Sbjct: 142 EHRIPCVGYRVEEKDYPGELQVEKLKELQVPAGPIYGRLKAGETVTLADGRQINGTDFIG 201
Query: 246 SPE----VAFTGDTTSEFMLN--PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
S + V GDT S + NADA L+ E+T+ + + A+ + H+
Sbjct: 202 SAKKGRIVTILGDTRSTPNIEKLAANADA-----LVHESTYGKGDAKL--ARAYYHSTCI 254
Query: 300 EIIENAKWIRNKAVLLTHFSSRY 322
+ + AK + +LLTH S+RY
Sbjct: 255 QAAQVAKKTGVRKLLLTHISARY 277
>gi|375362918|ref|YP_005130957.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731099|ref|ZP_16170225.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451346411|ref|YP_007445042.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
gi|371568912|emb|CCF05762.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407075253|gb|EKE48240.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850169|gb|AGF27161.1| ribonuclease Z [Bacillus amyloliquefaciens IT-45]
Length = 308
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E + IV H V + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFEDEHFIVTAASVIHGV-EAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+KLKK G +T D + SP+ VAF+GDT + + RNAD +L
Sbjct: 175 QKLKK-GETVTLDDGRIINGRDFLESPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|429111046|ref|ZP_19172816.1| Ribonuclease Z [Cronobacter malonaticus 507]
gi|426312203|emb|CCJ98929.1| Ribonuclease Z [Cronobacter malonaticus 507]
Length = 324
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 38/243 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + L++
Sbjct: 79 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLHVH 138
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------G 227
+ D GE ++V + H + GY I K LK G
Sbjct: 139 EITEGQLSDDGE-------LIVTAYPLTHPVECYGYRIEEHDKPGALDAARLKAAGVTPG 191
Query: 228 KQIEKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAKI 273
++LK+ G +T D + +P ++A GDT+ P+ + R
Sbjct: 192 PLFQQLKR-GETVTLPDGRTVCGADYLSAPRPGKKIAIFGDTSP----TPQAVNLARDVD 246
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ T L+ M+ E A GH+ + A+ K +L+THFSSRY E+ ++ + +
Sbjct: 247 VMVHETTLEAAMA-EKANGRGHSTTQQAAAVARDAGAKRLLMTHFSSRYSAEECQRLLAE 305
Query: 334 LQS 336
Q+
Sbjct: 306 CQT 308
>gi|76801770|ref|YP_326778.1| hypothetical protein NP2254A [Natronomonas pharaonis DSM 2160]
gi|121708247|sp|Q3IRM5.1|RNZ_NATPD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|76557635|emb|CAI49218.1| ribonuclease Z [Natronomonas pharaonis DSM 2160]
Length = 308
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + FITH H DHI GLP + + + + P +++VP
Sbjct: 35 FDCGEGTQRQMMRFGTGFAVSKAFITHLHGDHILGLPGLLQTMDFNDREEPLSVYVPSGK 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ ++ L I + G + + + G+ +D +R F+T H S GY +
Sbjct: 95 QAELRDL--IDTAAGAPSFPVHVNGVSDGQVVVDADDYEIRAFETDHDARSLGYALIEAS 152
Query: 216 KKL----------------KKQYIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
+K K Q +H G+ +E + VE ++ P V +TGDT
Sbjct: 153 RKGRFDRERAEELGVPVGPKFQQLH-AGEAVELEDGTVVEPEQVVGDPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T + NAD +LI +ATF D + + A + H+ +E + A + +
Sbjct: 212 RPTDRTVTVAENAD-----LLIHDATFATD--NADRAARTAHSTAAEAADIASRADARRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|385812157|ref|YP_005848548.1| ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
gi|299783056|gb|ADJ41054.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus fermentum CECT 5716]
Length = 310
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ EATF +E + H H + + + AK + +LL H S+RY
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYHSTSXQAATV--AKKAGAQRLLLNHISARY 275
>gi|227514772|ref|ZP_03944821.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
gi|227086881|gb|EEI22193.1| ribonuclease Z [Lactobacillus fermentum ATCC 14931]
Length = 310
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ EATF +E + H H + + + AK + +LL H S+RY
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYHSTSAQAATV--AKKAGAQRLLLNHISARY 275
>gi|242373804|ref|ZP_04819378.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
gi|242348541|gb|EES40143.1| ribonuclease Z [Staphylococcus epidermidis M23864:W1]
Length = 306
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 118/269 (43%), Gaps = 46/269 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVKAELLNHGITSYGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL-----------SPEVAFTGD 254
+ + LK ++ K E + E ++ P VA GD
Sbjct: 152 APTTPGTIDVEALKAIGLNPGPKYQEVKVQDTFEHNGLMYQSSDFKGAAKPGPVVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E++L A A ++I E+T+++ E ++ A + H+H+ ++ + K +
Sbjct: 212 TKPCDNEYIL------AQDADVMIHESTYIEGEKTL--ANNYHHSHIDDVFDLIKNANVR 263
Query: 312 AVLLTHFSSRYHIEDIRQ--AVLKLQSKV 338
L+TH S+RY+IE++ L QS V
Sbjct: 264 KSLITHISNRYNIEEVESIYEALNNQSDV 292
>gi|386742982|ref|YP_006216161.1| binuclear zinc phosphodiesterase [Providencia stuartii MRSN 2154]
gi|384479675|gb|AFH93470.1| binuclear zinc phosphodiesterase [Providencia stuartii MRSN 2154]
Length = 304
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P +K+ VE + + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTLYGPKGLKQYVETVLTLSSSY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ ++ G+ ++ +++V + H + GY I L KL + I +G +
Sbjct: 117 MIEIEPGQLFD-DGELIVTAYPLDHRVECYGYRIEEHPKRGSLDVDKLAQDNIP-RGPWM 174
Query: 231 EKLKKSG---------VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK V D + P+ +A GDT T + + +NAD +++
Sbjct: 175 QALKAGETIMLADGRRVNGADYLGEPKPGKVIAIFGDTKPTEQALFLAKNAD-----VMV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E T + E A GH+ + + A+ K + TH S RY ED+ + + Q
Sbjct: 230 HETTL--ENAYHEKANDRGHSTTGQAAQLARDAGVKRFIATHISGRYSAEDMPMLLAECQ 287
Query: 336 S 336
+
Sbjct: 288 A 288
>gi|306490831|gb|ADM94951.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 38/233 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+RGL +K IF P ++ ++ F+ S ++
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLENYLKNNFD--YSCTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK----- 226
+ A++ E Y N +I V +H + S GY I + K +K+ + K
Sbjct: 117 IYAIE-KENYLSSNLLWKNENISVYCALLNHYLDSFGYAI--IEKNIKRNILVEKLVKLG 173
Query: 227 ---GKQIEKLKKSGV-------------EITDIILSPEVAFTGDTTSEFMLNPRNADALR 270
G +K K++G+ I + I ++ + GDTT N A
Sbjct: 174 VPPGPIYKKFKENGIINLNDGMVLKADDFIKESISIKKLCYCGDTT---FSNNAVILAQE 230
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
A +LI E TF + A+Q H+ + E I+ A+ R K + +TH S RYH
Sbjct: 231 ADLLIHEGTFCSKRK--QEAKQSYHSTIEEAIKVARLARVKKLAITHLSPRYH 281
>gi|70607049|ref|YP_255919.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449067284|ref|YP_007434366.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449069555|ref|YP_007436636.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
gi|76363385|sp|Q4J9A4.1|RNZ_SULAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|68567697|gb|AAY80626.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035792|gb|AGE71218.1| ribonuclease Z [Sulfolobus acidocaldarius N8]
gi|449038063|gb|AGE73488.1| ribonuclease Z [Sulfolobus acidocaldarius Ron12/I]
Length = 292
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 34/228 (14%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N + I+H H DH+ GLP + + +Y+ + + + P+ +D K H
Sbjct: 51 MKLNLIGISHLHGDHVLGLPGIIQTMAMYSRQQKLLLMGPTTLQDYLKSSSKHTYF-KPG 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ + ++YE +N + + F+T H I S G++I K +LKK+ I
Sbjct: 110 FETEFI-----QSYEDQN-LTITTFRTCHTIESYGFLIKEKDKTKVDAERLKKEGI-TDW 162
Query: 228 KQIEKLKKSG-VEITDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILI 275
+ I KLK+ VEI + PE +A+TGDT + +LN +LI
Sbjct: 163 RIIRKLKEGKRVEIDTKVFLPEDYLYVKKGLSIAYTGDTAPCDSVLNAIKG----VDLLI 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
++TFL++ A +GH++ ++ E A K + L H S RY
Sbjct: 219 HDSTFLNE----REAHDYGHSNCTDAAEIASKADVKRLALYHISGRYQ 262
>gi|223477179|ref|YP_002581723.1| Ribonuclease Z [Thermococcus sp. AM4]
gi|214032405|gb|EEB73235.1| Ribonuclease Z [Thermococcus sp. AM4]
Length = 314
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTIRQMNTAKLSPMKVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G D+ ++GET + FK H IP+ GYV
Sbjct: 94 TFEFVQNFI----NSGFFRPVFDIHVHELGETRLKFKGYEIWSFKVEHGIPALGYVFREK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT 256
K+ K KQY G + KL++ G +E I+ E + +TGDT
Sbjct: 150 DKRGKFLPEKLKQYGLEPGPMLGKLEREGQIEWNGQIIRLEDVTGPRRRGVKIVYTGDTE 209
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+ + RA +LI +AT+L DE E H+ + E E AK + K + L
Sbjct: 210 P---VERVKLFSERADLLIHDATYLTDEDRGESY----HSTVEEACETAKKAKVKLLALF 262
Query: 317 HFSSRYHIED 326
H + RY ++
Sbjct: 263 HRAFRYTYDE 272
>gi|188026419|ref|ZP_02962021.2| hypothetical protein PROSTU_04109 [Providencia stuartii ATCC 25827]
gi|188020017|gb|EDU58057.1| ribonuclease Z [Providencia stuartii ATCC 25827]
Length = 309
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 34/241 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P T++ P +K+ VE + + S + L+
Sbjct: 64 IFITHLHGDHIFGLPGLLCSRSMGGSTDPLTLYGPKGLKQYVETVLTLSSSY--MTYPLE 121
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
++ ++ G+ ++ +++V + H + GY I L KL + I +G +
Sbjct: 122 MIEIEPGQLFD-DGELIVTAYPLDHRVECYGYRIEEHPKRGSLDVDKLAQDNIP-RGPWM 179
Query: 231 EKLKKSG---------VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
+ LK V D + P+ +A GDT T + + +NAD +++
Sbjct: 180 QALKAGETIMLADGRRVNGADYLGKPKPGKVIAIFGDTKPTEQALFLAKNAD-----VMV 234
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E T + E A GH+ + + A+ K + TH S RY ED+ + + Q
Sbjct: 235 HETTL--ENAYHEKANDRGHSTTGQAAQLARDAGVKRFIATHISGRYSAEDMPMLLAECQ 292
Query: 336 S 336
+
Sbjct: 293 A 293
>gi|126466127|ref|YP_001041236.1| RNAse Z [Staphylothermus marinus F1]
gi|126014950|gb|ABN70328.1| RNAse Z [Staphylothermus marinus F1]
Length = 251
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 87/211 (41%), Gaps = 41/211 (19%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N V ITH H DH GL S L N K + P+ +D+ K F I L +E
Sbjct: 52 VKINAVMITHLHGDHYLGLFGMFQSMHLSNRKNELYLIAPAKLKDLLKEF-IELGLAKIE 110
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
L V GE Y + I V FK H I + GY++ L
Sbjct: 111 YPLYFVEAREGELYR-DSKISVEAFKVVHGIEAYGYILML-------------------- 149
Query: 234 KKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQ 291
K+G + +TGDT E +NAD ILI EATF D + A
Sbjct: 150 -KNG---------KRIVYTGDTKPFEELESIAKNAD-----ILIHEATFTSDLR--KEAW 192
Query: 292 QHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ GH+ ++ A K ++LTH SSRY
Sbjct: 193 EQGHSTAADAAITAYKAGVKELVLTHISSRY 223
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 44/177 (24%)
Query: 117 NFVFITHGHLDHIGGLPMYVAS---RGLYNLKPPTIFVPPSIKEDVEKLFE----IHRSL 169
+ + I+H H+DH G LP +V + GL + PT P + ED +K+FE + + L
Sbjct: 59 DIIVISHFHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPL 118
Query: 170 GNVE-LNLDL---VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
E +N L +AL++ ETYE+ + ++RP+ HVI G ++ +R
Sbjct: 119 YTTEQINNCLSKVIALNMEETYEIEQEFIIRPYYAGHVI---GAAMFFVR---------- 165
Query: 226 KGKQIEKLKKSGVEITDIILSPEVAFTGD--TTSEFMLNPRNADALRAKILITEATF 280
L V +TGD T + L D L +LITE+T+
Sbjct: 166 ------------------YLDETVVYTGDFSTIPDRYLRAATIDCLYPDLLITESTY 204
>gi|315658219|ref|ZP_07911091.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|418635257|ref|ZP_13197637.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
gi|315496548|gb|EFU84871.1| ribonuclease Z [Staphylococcus lugdunensis M23590]
gi|374842042|gb|EHS05493.1| ribonuclease Z [Staphylococcus lugdunensis VCU139]
Length = 307
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 111/257 (43%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGESKPLTLVGPH 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
IK VE + S ++ + + +D G +Y N V +H I S GY +
Sbjct: 96 GIKAFVETTLSLSES--HLNYPITFIEIDDGFSYH-HNGFKVTAKVLNHGIVSYGYRVEA 152
Query: 214 LRKKLKKQYIHLK------GKQIEKLKKSGV-EITDIIL-----------SPEVAFTGDT 255
K LK G + +++K + E +II P +A GDT
Sbjct: 153 PTTPGKINVEALKALGLEPGPKYQEVKDNDTFEFNNIIYKSQDFKGLAKPGPIIAIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
+E ++ A A+++I EAT+++ + + A + H+H+ ++ + K
Sbjct: 213 KPCANEKII------AQDAQLMIHEATYIEGDKVL--ANNYHHSHIDDVFQLIHQAHVKQ 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI
Sbjct: 265 TLITHMSNRYNKEDIHH 281
>gi|425067050|ref|ZP_18470166.1| ribonuclease Z [Proteus mirabilis WGLW6]
gi|404601721|gb|EKB02113.1| ribonuclease Z [Proteus mirabilis WGLW6]
Length = 305
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P +I+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLSIYGPTGIKTFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ G I V H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQGGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D + A GH+ + E AK K +++TH SSRY
Sbjct: 230 VHEATFKHD--MADKANSRGHSSTIQAAELAKKANAKRLIITHISSRY 275
>gi|306490860|gb|ADM94979.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+RGL +K IF P +K ++ F+ S ++
Sbjct: 59 IFISHLHGDHIFGLPGLLATRGLLGIKKSINIFGPIGLKNYLKNNFD--YSYTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHLK-- 226
+ ++ E+Y N +I V +H + S GY I + R L ++ + L
Sbjct: 117 IYTIE-KESYLSNNLLWENGNISVYCALLNHYLDSFGYAIIEKNIRRNILVEKLVKLGIP 175
Query: 227 -GKQIEKLKKSGVE-------------ITDIILSPEVAFTGDTTSEFMLNPRNADALRAK 272
G +K K++G+ I + I ++ + GDTT N A A
Sbjct: 176 PGPIYKKFKENGIVNLDDGTVLKSADFIKESISIKKLCYCGDTT---FSNNAVILAQEAD 232
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+LI E TF + A+Q H+ + E I+ A+ R K + +TH S RYH
Sbjct: 233 LLIHEGTFCSKRK--QEAKQSYHSTIEEAIKVARLARVKKLAITHLSPRYH 281
>gi|149276254|ref|ZP_01882398.1| ribonuclease Z [Pedobacter sp. BAL39]
gi|149232774|gb|EDM38149.1| ribonuclease Z [Pedobacter sp. BAL39]
Length = 303
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIH 166
R +A + +++FI+H H DH GL +++ L +KP IF P + E +E F
Sbjct: 47 RYGIKASKIDYIFISHLHGDHYFGLIGLLSTMHLNGRIKPIYIFAPGPLMEILELQFRHS 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH-L 225
++ ++ + DV T D+ V +H IP G+ + +K+L+K I L
Sbjct: 107 ETVIRYDIEFVPLVADVSRTIFENQDVSVESIVLNHRIPCTGFK-FTEKKRLRKLMIEKL 165
Query: 226 KGKQI----EKLKKSGVEIT--DIILSPEVAFTGDT--------TSEFMLNPRNADAL-R 270
+ + + L K G ++ D L +T D+ S+ + N +
Sbjct: 166 EAENVPINYYSLLKRGADLNFPDGRLLRNEEYTVDSDQPRSYCYCSDTLFNDSYLPVIAN 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
+L EATFL + ++ A Q HT + E AK + + +L+ HFSSRY I
Sbjct: 226 CDLLYHEATFLHE--MLDRANQTHHTTALQAAEAAKMVGARKLLIGHFSSRYKI 277
>gi|254167734|ref|ZP_04874584.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289597097|ref|YP_003483793.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623262|gb|EDY35827.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|289534884|gb|ADD09231.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 33/225 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L K P I+ P + + K I + +
Sbjct: 60 IFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGPERTIDILTKFLNI--GYYSPSFKIV 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQIE 231
L L E+ + D VV+ KT H +PS Y I + R + K + L K +E
Sbjct: 118 LYELKGNESLDF-GDYVVKVMKTKHPVPSLAYAIKEKDMPRIDRNRAKA--LGLNSKILE 174
Query: 232 KLKKSGV------EIT------DIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL+K+G EIT + + ++ ++GDT E M+ + A A +LI EA
Sbjct: 175 KLRKNGKIEYEGKEITIDEVSNGVRVGRKIVYSGDTAPMEEMI----SFAANANVLIHEA 230
Query: 279 TFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
T E S+E A Q+GH+ + + AK A+LL H S RY
Sbjct: 231 TV---ESSLEEQANQYGHSSARQAAKIAKKANVDALLLVHISPRY 272
>gi|377831397|ref|ZP_09814374.1| ribonuclease Z [Lactobacillus mucosae LM1]
gi|377554824|gb|EHT16526.1| ribonuclease Z [Lactobacillus mucosae LM1]
Length = 308
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP ++SR P TI+ P IKE V+ ++ S + L
Sbjct: 59 IFISHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVKTALKVSES--RLSYPLK 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V L D GE + + V K +H I GY + L +KL+ Y
Sbjct: 117 FVELRDDGEIFSDKT-FTVYTKKLNHKIACFGYRVVEHDHPGELQVEKLRAAQVPSGPIY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD-ALRAKILITEATF 280
LK GK +E ++ D I +P+ S+ P + A A +LI E TF
Sbjct: 176 GQLKAGKVVELPDGRVLDGHDFIGAPQKGRVITIISDTRHTPAAIELAKDADVLIHEGTF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
DE + A+ + H+ + AK K +LLTH S+RY
Sbjct: 236 AKDETKM--ARSYYHSTSGQAAMTAKKAHAKKLLLTHISARY 275
>gi|448466727|ref|ZP_21599232.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
gi|445813587|gb|EMA63564.1| ribonuclease Z [Halorubrum kocurii JCM 14978]
Length = 310
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 38/248 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + +P T+ PP
Sbjct: 35 FDCGEGTQRGMMRYGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRTEPLTVHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLD-----LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
+D+ L + +D VALD + YE VR F+T H SQGY
Sbjct: 95 ADDLRDLVHAVGHDPAFRIRIDEVAPGAVALDA-DGYE------VRAFETTHRTKSQGYA 147
Query: 211 I-------YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPEVAFTGDT 255
+ R K ++ + + G+ +E + VE ++ P T
Sbjct: 148 LEEDDRPGRFDRPKAEELGVPVGPKFGRLHAGEPVEAEDGTVVEPEQVVGPPRPGRTLVY 207
Query: 256 TSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T++ R + R A +L+ +ATF DD + A+ H+ E A+ K +
Sbjct: 208 TADTRPRERTVEVARDADLLVHDATFADD--MADRARDTAHSTGREAGSIAERAGAKRLA 265
Query: 315 LTHFSSRY 322
L H SSRY
Sbjct: 266 LVHVSSRY 273
>gi|417885528|ref|ZP_12529682.1| ribonuclease Z [Lactobacillus oris F0423]
gi|341595450|gb|EGS38099.1| ribonuclease Z [Lactobacillus oris F0423]
Length = 309
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V ++ S + L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRFVTTALQVSES--RLSYPLH 116
Query: 178 LVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
V +D GE + R V K H I GY + L KL+ Y
Sbjct: 117 FVEIDHEGEVFHDRG-FTVTARKLDHKIACYGYRVVEADHPGELQVDKLRALNIPSGPVY 175
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
LK GK + V D I +P+ +A GDT T+ + ++AD +L+
Sbjct: 176 GQLKAGKVVTLADGRTVNGQDFIGAPQKGRIIAICGDTRKTANAVELAQDAD-----VLV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF DE + A+ + H+ + E AK K +LL H S+RY
Sbjct: 231 HESTFAKDEPKL--ARSYYHSTSLQAAEIAKRAGAKRLLLNHISARY 275
>gi|330508890|ref|YP_004385318.1| ribonuclease Z [Methanosaeta concilii GP6]
gi|328929698|gb|AEB69500.1| ribonuclease Z [Methanosaeta concilii GP6]
Length = 305
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T ++ N++F+TH H DHI G+P + + P P
Sbjct: 34 FDCGEGTQRQMMRARTGMMRLNYIFLTHLHADHILGIPGLLETMAFQGRVEPITIAGPI- 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVG--ETYEMRNDIVVRPFKTHHVIPSQGYVI-- 211
+L E +S+ N +++AL++ + +M+ VR +T H +PS GYV+
Sbjct: 93 --HTARLVECFKSVCYFSRNFEVIALELSPEDVVKMKG-YQVRAIETRHSVPSLGYVLEE 149
Query: 212 -YLLRKKLKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT 255
L + + I L G +L+ V + ++ P+ V +TGDT
Sbjct: 150 DQRLGRFDRDAAISLGVPPGPLFGRLQHGHEVAVEGRVVQPQQVMGPPRPGRKVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ DA R L+ + L +M IE A + H+ E E A+ + ++L
Sbjct: 210 RPCRSVE----DAGRGADLLIHDSALASDM-IEWAMETKHSTAKEAAELARRAGVRHLIL 264
Query: 316 THFSSRY 322
TH SSRY
Sbjct: 265 THISSRY 271
>gi|159906130|ref|YP_001549792.1| ribonuclease Z [Methanococcus maripaludis C6]
gi|254808648|sp|A9AB37.1|RNZ_METM6 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|159887623|gb|ABX02560.1| ribonuclease Z [Methanococcus maripaludis C6]
Length = 308
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI GLP + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGLPGLLQSVAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMLENILNVGYHSIDYPINVYEISSKTPEKIISTDNYEVYSFPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEIT-------DIILSPE----VAFTGDTT 256
+K K+ K I + G +++LK VE+ D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFSVELNGKIITLEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+EF R L+ LI EATF D+ ++A++ H+ + + + AK V+
Sbjct: 212 PLNEFAEFLRE---LKCTTLIHEATF--DKTMDKNAKETLHSTVHDALNIAKLSGVNTVI 266
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 267 LTHISARY 274
>gi|408383254|ref|ZP_11180791.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
gi|407814036|gb|EKF84674.1| Ribonuclease Z [Methanobacterium formicicum DSM 3637]
Length = 302
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 44/278 (15%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD G R + + + +FITH H DH GLP + S P I+ P
Sbjct: 33 FDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRGRTEPLHIYGPEG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYL 213
I + VE + ++LG L+ + A +V E ++ D ++ THH + + Y +
Sbjct: 93 IIKTVESI----KNLGYYALSFPIHAYEVTEGTVLQTDEYLIECCPTHHSVLNLAYSVEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT- 255
R K L+++ I L G KL+K VE+ ++ P+ V ++GDT
Sbjct: 149 KRSPKFLREKAIQLGLKPGPDFGKLQKGIPVEVDGTMIKPDQVLGEKRKGRKVVYSGDTK 208
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
E + AD +LI E+T+ + S A ++GH+ + AK ++
Sbjct: 209 PCPEMVQFASGAD-----VLIHESTYESAQES--KAIENGHSTTTHAAMIAKEAEVSELI 261
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352
LTH S+RY D +A S+V KV+ L E F ++
Sbjct: 262 LTHISTRYRDSDKLRAE---ASQVFNKVI-LAEDFLNI 295
>gi|372325262|ref|ZP_09519851.1| Ribonuclease Z [Oenococcus kitaharae DSM 17330]
gi|366984070|gb|EHN59469.1| Ribonuclease Z [Oenococcus kitaharae DSM 17330]
Length = 326
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL------KPP-- 147
FD+G + TRA + +FI+H H DHI GLP ++ SR +P
Sbjct: 36 FDVGEATQHQLLKSNTRARKITKIFISHMHGDHIFGLPGFLTSRNFQGSEAIDQGRPSDL 95
Query: 148 TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ 207
TI+ P +++ V + + ++ +D V + G ++ + V F +H I
Sbjct: 96 TIYGPAGLRQYVFSALKAAQV--RLQYRVDFVEVHPGVVFQDKQ-FSVTAFAMNHGIEDY 152
Query: 208 GY------------VIYLLRKKLKKQ--YIHLKGKQIEKLKKSGVEITDIILSPE----- 248
Y V LL LK + +K Q L V + + P+
Sbjct: 153 AYRIVEADAVGELQVAKLLNLGLKSGPLFGQIKAGQDISLPDGRVLKSADFIGPDRPGRI 212
Query: 249 VAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
V DT S NP +A + A +L+ E+T+ D + A++HGH+ + ENAK
Sbjct: 213 VTIVMDTKS----NPAIIEAAKNADLLVHESTY--DGQNTAMAKKHGHSTCVQAAENAKK 266
Query: 308 IRNKAVLLTHFSSRY 322
+ K ++LTH S+RY
Sbjct: 267 AQAKHLILTHISARY 281
>gi|374295232|ref|YP_005045423.1| RNAse Z [Clostridium clariflavum DSM 19732]
gi|359824726|gb|AEV67499.1| RNAse Z [Clostridium clariflavum DSM 19732]
Length = 303
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELN 175
+ V TH H DH+ GLP ++ + G + P + V PP IKE VE L I L
Sbjct: 55 DAVLFTHYHGDHVAGLPGFLLTLGNSGREEPLMLVGPPGIKEVVEGLTVISPEL---PYE 111
Query: 176 LDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYIHLKGKQI 230
L+L+ L E+ E+ + I ++ H IP Y I L R+ + + + +
Sbjct: 112 LNLIELPDSESAEVSVSGIFIKSLPVDHTIPCLSYCIELKRQGKFDVDRARELMIPVNYW 171
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTSE----FMLNPRNADAL-----RAKILITEATF 280
KL+K V + D +++PE+ G+ + + R +D L + + I E +
Sbjct: 172 NKLQKGENVTVDDRVITPEMVL-GEPRKGIKVCYCTDTRPSDELAEFIKDSDLFICEGMY 230
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
DE A+Q H SE AK + + LTH+S
Sbjct: 231 -GDENDTHKAEQKKHMTFSEAALLAKKGNVEELWLTHYS 268
>gi|389571762|ref|ZP_10161851.1| ribonuclease Z [Bacillus sp. M 2-6]
gi|388428656|gb|EIL86452.1| ribonuclease Z [Bacillus sp. M 2-6]
Length = 309
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 115/258 (44%), Gaps = 36/258 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK V ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGENELTIYGPSGIKAFVNATLSATQT--HLTYPLH 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
++ ++ G +E V + H IP+ GY + L + LKK Y
Sbjct: 117 IIEIEEGIVFE-DETFQVEARRVAHGIPAYGYRVVEKDVPGALKAEDLKKIGVKPGPLYQ 175
Query: 224 HLKGKQIEKLKKSG-VEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
LK + L+ ++ T+ + P+ VAF+GDT +NAD +L+
Sbjct: 176 KLKNGETVTLEDGRMIDGTNYLEPPKKGRIVAFSGDTRLCENITRLAKNAD-----VLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
EATF ++ + A + H+ + + A+ K ++LTH S+RY E+ + +L
Sbjct: 231 EATFGKEDAEL--AYNYYHSTTEQAAKTAQEAGAKRLILTHISARYQGEESMKQLL---- 284
Query: 337 KVSAKVVPLTEGFKSVYT 354
K + + PLTE ++
Sbjct: 285 KEARDIFPLTEAAHDFFS 302
>gi|227529067|ref|ZP_03959116.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
gi|227351079|gb|EEJ41370.1| ribonuclease Z [Lactobacillus vaginalis ATCC 49540]
Length = 309
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK+ V ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGNEPLTIYGPVGIKKFVMTALQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRNDIVVRPFKT-----HHVIPSQGYVI-------YLLRKKLKKQ---- 221
L +++ + E+ N+ R FK H I GY I L KL++
Sbjct: 115 LKFVEIDHSQELFNE---RGFKVTTMSLDHKIACYGYRIEEADHPGELQVDKLRQDNIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADAL--RA 271
Y LK + KL V + + I P+ +A GDT P NA L +A
Sbjct: 172 GPIYGQLKAGKTVKLDDGRVIDGKNYIGKPQPGRIIAILGDTRQ----TP-NAVVLAHKA 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF +E + H + H+ + E AK K +LLTH S+RY
Sbjct: 227 DVLVHESTFAKNEAKMAH--NYYHSTSLQAAEVAKQAGVKKLLLTHISARY 275
>gi|184155103|ref|YP_001843443.1| beta-lactamase superfamily hydrolase [Lactobacillus fermentum IFO
3956]
gi|254808643|sp|B2GBD1.1|RNZ_LACF3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|183226447|dbj|BAG26963.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus fermentum IFO 3956]
Length = 310
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP +++SR P TI+ P IK+ V+ ++ S L V
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
EL D GE ++ + V + H I S GY + L+ +K+++
Sbjct: 119 ELTGD------GEVFKDQT-FTVTARRLDHKIASFGYRVEEAAHPGELMVEKVRQAGIPS 171
Query: 222 ---YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRA 271
Y LK ++ L V+ D I +P+ VA GDT T + + AD
Sbjct: 172 GPLYGQLKRGEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGAD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ EATF +E + H H + + + AK + +LL H S+RY
Sbjct: 228 -VLVHEATFAKNEQRLAHNYYHSTSVQAATV--AKKAGAQRLLLNHISARY 275
>gi|15679819|ref|NP_276937.1| hypothetical protein MTH1831 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|41017519|sp|O27859.1|RNZ_METTH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|2622965|gb|AAB86297.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 307
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S G + P I+ PP I E L E +G L+ D
Sbjct: 57 IFITHLHGDHILGIPGMIQSMGFRGREEPLDIYGPPGIHE----LHECIMKMGYFTLDFD 112
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLK---GKQIE 231
+ +V G T +D V H + + Y ++ L+++ I L G
Sbjct: 113 INVHEVRGGTVVEEDDYRVTSAPASHSVFNLAYCFEEKKRPRFLREKAIALGLKPGPAFG 172
Query: 232 KLKKS-GVEITDIILSPE-----------VAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL + V + D I+ PE V ++GDT E ++ A A++LI E+
Sbjct: 173 KLHRGIPVRVGDRIIMPEEVLGSPRKGVKVCYSGDTRPCESVIKL----AEGAELLIHES 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
T + S + A + GH+ E E A+ K ++LTH S+RY
Sbjct: 229 TL--EAGSEDKAAESGHSTAREAAEVARSAGVKRLILTHLSTRY 270
>gi|90962068|ref|YP_535984.1| ribonuclease Z [Lactobacillus salivarius UCC118]
gi|122448828|sp|Q1WT50.1|RNZ_LACS1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|90821262|gb|ABD99901.1| Ribonuclease Z [Lactobacillus salivarius UCC118]
Length = 317
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKAPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|254166986|ref|ZP_04873839.1| ribonuclease Z [Aciduliprofundum boonei T469]
gi|197623842|gb|EDY36404.1| ribonuclease Z [Aciduliprofundum boonei T469]
Length = 308
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 102/225 (45%), Gaps = 33/225 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L K P I+ P + + K I + +
Sbjct: 60 IFITHYHGDHFLGLAGLIQTMTLNERKEPLEIYGPDRTIDILTKFLTI--GYYSPSFKIV 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQIE 231
L L E+ + D VV+ KT H +PS Y I + R + K + L K +E
Sbjct: 118 LYELKGNESLDF-GDYVVKVMKTKHPVPSLAYAIKEKDMPRIDRNRAKA--LGLNSKILE 174
Query: 232 KLKKSGV------EIT------DIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL+K+G EIT + + ++ ++GDT E M+ + A A +LI EA
Sbjct: 175 KLRKNGKIEYEGKEITIDEVSNGVRVGRKIVYSGDTAPMEEMI----SFAANANVLIHEA 230
Query: 279 TFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
T E S+E A Q+GH+ + + AK A+LL H S RY
Sbjct: 231 TV---ESSLEEQANQYGHSSARQAAKIAKKANVDALLLVHISPRY 272
>gi|384265998|ref|YP_005421705.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899017|ref|YP_006329313.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
gi|380499351|emb|CCG50389.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173127|gb|AFJ62588.1| ribonuclease Z [Bacillus amyloliquefaciens Y2]
Length = 308
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E +H + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIET--SLHVTATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|385840643|ref|YP_005863967.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
gi|300214764|gb|ADJ79180.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Lactobacillus salivarius CECT 5713]
Length = 317
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|253576741|ref|ZP_04854068.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843951|gb|EES71972.1| ribonuclease Z [Paenibacillus sp. oral taxon 786 str. D14]
Length = 312
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 40/256 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + ++FITH H DH+ GLP ++SR P I+ P
Sbjct: 36 FDCGEGTQHQILRSPLKLSKLEYIFITHLHGDHLFGLPGLISSRAYQGGDTPLVIYGPKG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+K+ VE + S + L+LV G +E + V H I S GY +
Sbjct: 96 LKKFVETALSLSES--RINYKLELVEHQGGVLFE-DDSFRVEAALLEHRIDSYGYRVIEK 152
Query: 212 ---------YLLRKKLKKQYIHLKGKQIEKL---KKSGVEITDIILSPE----VAFTGDT 255
L R ++ ++ K K+ E + V D++ P+ V GDT
Sbjct: 153 DLPGKLDSAVLERCGIRPGPLYGKLKRGESVVAPNGETVHAKDVLGMPKAGRIVTILGDT 212
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
+ +NAD +L+ EATFL + H H + ++ +
Sbjct: 213 RPCESVLTLAQNAD-----MLVHEATFLHELAKTAHDYHHSTAKQAAAAAKEAGVQQ--L 265
Query: 314 LLTHFSSRYHIEDIRQ 329
LLTHFSSRY +D Q
Sbjct: 266 LLTHFSSRYKSDDQLQ 281
>gi|304314168|ref|YP_003849315.1| ribonuclease Z [Methanothermobacter marburgensis str. Marburg]
gi|302587627|gb|ADL58002.1| predicted ribonuclease Z [Methanothermobacter marburgensis str.
Marburg]
Length = 306
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 42/230 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S G + P I+ PP I E E + + LG L+ D
Sbjct: 56 MFITHLHGDHILGIPGMIQSMGFRGRQEPLEIYGPPGIHELHESIMK----LGYFTLDFD 111
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ +V G T D + H + + Y + KK+ L+ K IE K
Sbjct: 112 IHVHEVKGGTVLEEEDYRITSAPASHSVFNLAYCF-----EEKKRPRFLREKAIELGLKP 166
Query: 237 G-----------VEITDIILSPE-----------VAFTGDTT-SEFMLN-PRNADALRAK 272
G V + D I+ PE + ++GDT E +++ R AD
Sbjct: 167 GPAFGKLHRGIPVRVGDRIIKPEEVLGSPRRGVKICYSGDTRPCESVIDLAREAD----- 221
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+LI E+TF + S + A + GH+ E E A + ++LTH S+RY
Sbjct: 222 LLIHESTF--EAGSEDKAAESGHSTAREAAEVAASACVRRLILTHLSTRY 269
>gi|223043089|ref|ZP_03613136.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|417908051|ref|ZP_12551818.1| ribonuclease Z [Staphylococcus capitis VCU116]
gi|222443300|gb|EEE49398.1| ribonuclease Z [Staphylococcus capitis SK14]
gi|341595138|gb|EGS37816.1| ribonuclease Z [Staphylococcus capitis VCU116]
Length = 306
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 44/266 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FI+H H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFISHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDIIL-----------------SPEVAFTGD 254
LK +E K V+I D P +A GD
Sbjct: 152 APTTPGTINVEALKAIGLEPGPKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E++L +NAD +++ EAT+++ E ++ A + H+H+ ++ + K
Sbjct: 212 TKPCDNEYVL-AKNAD-----VMVHEATYIEGEKTL--ANNYHHSHIDDVFQLIKNANVG 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSK 337
L+TH S+RY++ED+ ++ ++
Sbjct: 264 KSLITHISNRYNLEDVESIYKEINNQ 289
>gi|425058500|ref|ZP_18461881.1| ribonuclease Z [Enterococcus faecium 504]
gi|403038441|gb|EJY49657.1| ribonuclease Z [Enterococcus faecium 504]
Length = 313
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPSGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|306490893|gb|ADM95011.1| metal-dependent hydrolase [uncultured candidate division JS1
bacterium]
Length = 315
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 42/235 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP +A+RGL +K IF P + ++ F+ S ++
Sbjct: 59 IFISHLHGDHLFGLPGLLATRGLLGIKKSINIFGPVGLDNYLKNNFD--YSCTHIPYFYH 116
Query: 178 LVALDVGETYEMRN------DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK----- 226
+ A++ E+Y +N +I + +H + S GY I + K +K+ + K
Sbjct: 117 IYAIE-KESYLSKNLLWENGNISIYCALLNHYLDSFGYAI--IEKNIKRNILVEKLVKMG 173
Query: 227 ---GKQIEKLKKSGV-------------EITDIILSPEVAFTGDTT--SEFMLNPRNADA 268
G +K K++G+ I + I ++ + GDTT S ++ + AD
Sbjct: 174 IPPGPIYKKFKENGIINLNDGTVLKAVDFIKESISIKKLCYCGDTTFSSNAVILAQGAD- 232
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+LI E TF + A Q H+ + E I+ A+ R K + +TH S RYH
Sbjct: 233 ----LLIHEGTFCSKRK--QEANQSYHSTIEEAIKVARLARVKKLAITHLSPRYH 281
>gi|456011721|gb|EMF45458.1| DNA polymerase IV [Planococcus halocryophilus Or1]
Length = 752
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP + SR + P I+ P IKE V+ + R+ +
Sbjct: 492 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLDIYGPVGIKEYVQMTLTLSRTHLTYPIAYH 551
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--------YLLRKKLKKQ--- 221
EL+ ++ D T E R HVIPS G+ I L+ K L
Sbjct: 552 ELSEGMIFEDELMTVETR--------LLDHVIPSYGFRITQKPLPPKLLINKALSLGVPK 603
Query: 222 ---YIHLK-GKQIEKLKKSGVEITDIILSPEVAFT----GDT--TSEFMLNPRNADALRA 271
LK G+ IE V D+ S + F GDT + R AD
Sbjct: 604 GPLLAKLKTGQDIELANGQWVRSGDVTESEQPGFVVTILGDTRFCKAAVELGRGAD---- 659
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+L+ EATF D + + A ++GH + + E A+ R +++ H S+R+ ED
Sbjct: 660 -VLVHEATF--DATAKKMATEYGHATVYDAAETARLARANTLIMNHISARFLPED 711
>gi|294669231|ref|ZP_06734311.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291308863|gb|EFE50106.1| ribonuclease Z [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 307
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 54/244 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP ++SR +P ++ P I+ VE E+ ++ + +N
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFLGGADEPLCLYGPAGIRRFVESALEVSQTQLSYPINF 118
Query: 177 -----DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
D + LD GE VR F H +PS Y I ++ G Q+E
Sbjct: 119 HEFVSDGLILDDGE-------FTVRAFGLAHSLPSFAYRI--------EEKERAGGLQME 163
Query: 232 KLKKSGVEITDIILSPEVAFTGDTTS----------EFMLNPRN---------------- 265
+L++ G+ ++ + G+T + E++ PR
Sbjct: 164 RLRELGIPSGPLLGRLK---NGETVTLDDGRLIDGKEYLSPPRKGRIIAVFGDTKPCPSA 220
Query: 266 -ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
A A A +L+ EATF + ++ A++ H+ +S+ A K + LTH S+RY
Sbjct: 221 PAAAEGADVLVHEATFAAGDEAM--AEKVFHSTVSDAANLAAEAGVKQLYLTHISARYAD 278
Query: 325 EDIR 328
E+ R
Sbjct: 279 EEQR 282
>gi|257387128|ref|YP_003176901.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
gi|257169435|gb|ACV47194.1| ribonuclease Z [Halomicrobium mukohataei DSM 12286]
Length = 306
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 34/249 (13%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
K FD G R + + + VF+TH H DH+ G+P + + + + P I P
Sbjct: 30 KLLFDCGEGTQRQMMRFGTGFAVDHVFVTHTHGDHVLGIPGLLQTFDFNDREEPLAIHAP 89
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+ +E L + + + + V+ G+T + VR +T H S GY +
Sbjct: 90 AGTRGTIEDLVSVTGDTPSFPVRITQVS--AGDTVLDGDGYEVRAIRTQHRCQSVGYAVV 147
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K +++ G + KL + VE + PE + +TG
Sbjct: 148 EDDRKGRFDREKAEEELGIEPGPKYSKLHRGEPVEHEGRTIQPEAVVGPDRPGRTLVYTG 207
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT + + D A +L+ +ATF DD E A++ H E E A+ K +
Sbjct: 208 DTRPTDSVVEASED---ADLLVHDATFADD--WAERARKTAHATGREAAEVAQEAGAKRL 262
Query: 314 LLTHFSSRY 322
LTH S+RY
Sbjct: 263 ALTHISTRY 271
>gi|417810057|ref|ZP_12456737.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
gi|335349929|gb|EGM51427.1| ribonuclease Z [Lactobacillus salivarius GJ-24]
Length = 317
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREARVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|257878181|ref|ZP_05657834.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257881036|ref|ZP_05660689.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257884697|ref|ZP_05664350.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257889621|ref|ZP_05669274.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257892438|ref|ZP_05672091.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260559227|ref|ZP_05831413.1| ribonuclease Z [Enterococcus faecium C68]
gi|261207760|ref|ZP_05922445.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289565835|ref|ZP_06446277.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|293553444|ref|ZP_06674072.1| ribonuclease Z [Enterococcus faecium E1039]
gi|293560345|ref|ZP_06676840.1| ribonuclease Z [Enterococcus faecium E1162]
gi|293569803|ref|ZP_06680890.1| ribonuclease Z [Enterococcus faecium E1071]
gi|294614050|ref|ZP_06693979.1| ribonuclease Z [Enterococcus faecium E1636]
gi|294617214|ref|ZP_06696864.1| ribonuclease Z [Enterococcus faecium E1679]
gi|294620548|ref|ZP_06699849.1| ribonuclease Z [Enterococcus faecium U0317]
gi|314939158|ref|ZP_07846415.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|314943927|ref|ZP_07850644.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|314948037|ref|ZP_07851440.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|314953288|ref|ZP_07856219.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|314993367|ref|ZP_07858734.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|314994953|ref|ZP_07860074.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|383328336|ref|YP_005354220.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|389868486|ref|YP_006375909.1| ribonuclease Z [Enterococcus faecium DO]
gi|406581399|ref|ZP_11056555.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|406583697|ref|ZP_11058751.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|406586015|ref|ZP_11060966.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|406591403|ref|ZP_11065686.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410938171|ref|ZP_11370028.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|415890234|ref|ZP_11549434.1| ribonuclease Z [Enterococcus faecium E4453]
gi|416138563|ref|ZP_11599061.1| ribonuclease Z [Enterococcus faecium E4452]
gi|424790566|ref|ZP_18217099.1| ribonuclease Z [Enterococcus faecium V689]
gi|424796645|ref|ZP_18222345.1| ribonuclease Z [Enterococcus faecium S447]
gi|424819680|ref|ZP_18244749.1| ribonuclease Z [Enterococcus faecium R501]
gi|424855846|ref|ZP_18280140.1| ribonuclease Z [Enterococcus faecium R499]
gi|424877874|ref|ZP_18301515.1| ribonuclease Z [Enterococcus faecium R497]
gi|424945328|ref|ZP_18361031.1| ribonuclease Z [Enterococcus faecium R496]
gi|424953519|ref|ZP_18368473.1| ribonuclease Z [Enterococcus faecium R494]
gi|424957259|ref|ZP_18371995.1| ribonuclease Z [Enterococcus faecium R446]
gi|424961503|ref|ZP_18375943.1| ribonuclease Z [Enterococcus faecium P1986]
gi|424963896|ref|ZP_18378044.1| ribonuclease Z [Enterococcus faecium P1190]
gi|424967518|ref|ZP_18381212.1| ribonuclease Z [Enterococcus faecium P1140]
gi|424969726|ref|ZP_18383279.1| ribonuclease Z [Enterococcus faecium P1139]
gi|424974945|ref|ZP_18388146.1| ribonuclease Z [Enterococcus faecium P1137]
gi|424976355|ref|ZP_18389451.1| ribonuclease Z [Enterococcus faecium P1123]
gi|424981849|ref|ZP_18394552.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|424985274|ref|ZP_18397758.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|424987221|ref|ZP_18399605.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|424992003|ref|ZP_18404109.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|424994170|ref|ZP_18406123.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|424998570|ref|ZP_18410248.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|425001540|ref|ZP_18413045.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|425004179|ref|ZP_18415507.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|425007433|ref|ZP_18418564.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|425010862|ref|ZP_18421792.1| ribonuclease Z [Enterococcus faecium E422]
gi|425013930|ref|ZP_18424629.1| ribonuclease Z [Enterococcus faecium E417]
gi|425017575|ref|ZP_18428075.1| ribonuclease Z [Enterococcus faecium C621]
gi|425021372|ref|ZP_18431630.1| ribonuclease Z [Enterococcus faecium C497]
gi|425022936|ref|ZP_18433088.1| ribonuclease Z [Enterococcus faecium C1904]
gi|425032701|ref|ZP_18437725.1| ribonuclease Z [Enterococcus faecium 515]
gi|425036475|ref|ZP_18441224.1| ribonuclease Z [Enterococcus faecium 514]
gi|425039314|ref|ZP_18443865.1| ribonuclease Z [Enterococcus faecium 513]
gi|425041269|ref|ZP_18445676.1| ribonuclease Z [Enterococcus faecium 511]
gi|425046260|ref|ZP_18450289.1| ribonuclease Z [Enterococcus faecium 510]
gi|425048319|ref|ZP_18452228.1| ribonuclease Z [Enterococcus faecium 509]
gi|425051710|ref|ZP_18455360.1| ribonuclease Z [Enterococcus faecium 506]
gi|425060699|ref|ZP_18463981.1| ribonuclease Z [Enterococcus faecium 503]
gi|427394986|ref|ZP_18887908.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430820209|ref|ZP_19438845.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430822218|ref|ZP_19440797.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430825269|ref|ZP_19443474.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430828522|ref|ZP_19446642.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430830468|ref|ZP_19448526.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430833352|ref|ZP_19451365.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430836048|ref|ZP_19454033.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430837840|ref|ZP_19455790.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430844340|ref|ZP_19462238.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430846321|ref|ZP_19464181.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430849926|ref|ZP_19467693.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430852629|ref|ZP_19470360.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430854570|ref|ZP_19472283.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430858399|ref|ZP_19476027.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430862137|ref|ZP_19479489.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430864714|ref|ZP_19480539.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430870818|ref|ZP_19483424.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430959858|ref|ZP_19486993.1| ribonuclease Z [Enterococcus faecium E1576]
gi|431008979|ref|ZP_19489419.1| ribonuclease Z [Enterococcus faecium E1578]
gi|431195454|ref|ZP_19500432.1| ribonuclease Z [Enterococcus faecium E1620]
gi|431228550|ref|ZP_19501691.1| ribonuclease Z [Enterococcus faecium E1622]
gi|431258989|ref|ZP_19505166.1| ribonuclease Z [Enterococcus faecium E1623]
gi|431295275|ref|ZP_19507163.1| ribonuclease Z [Enterococcus faecium E1626]
gi|431369891|ref|ZP_19509590.1| ribonuclease Z [Enterococcus faecium E1627]
gi|431539677|ref|ZP_19517881.1| ribonuclease Z [Enterococcus faecium E1731]
gi|431622424|ref|ZP_19522851.1| ribonuclease Z [Enterococcus faecium E1904]
gi|431743652|ref|ZP_19532528.1| ribonuclease Z [Enterococcus faecium E2071]
gi|431745931|ref|ZP_19534768.1| ribonuclease Z [Enterococcus faecium E2134]
gi|431748561|ref|ZP_19537317.1| ribonuclease Z [Enterococcus faecium E2297]
gi|431754572|ref|ZP_19543233.1| ribonuclease Z [Enterococcus faecium E2883]
gi|431765358|ref|ZP_19553872.1| ribonuclease Z [Enterococcus faecium E4215]
gi|431766942|ref|ZP_19555402.1| ribonuclease Z [Enterococcus faecium E1321]
gi|431770562|ref|ZP_19558962.1| ribonuclease Z [Enterococcus faecium E1644]
gi|431773085|ref|ZP_19561419.1| ribonuclease Z [Enterococcus faecium E2369]
gi|431776048|ref|ZP_19564316.1| ribonuclease Z [Enterococcus faecium E2560]
gi|431778489|ref|ZP_19566700.1| ribonuclease Z [Enterococcus faecium E4389]
gi|431782148|ref|ZP_19570286.1| ribonuclease Z [Enterococcus faecium E6012]
gi|431785464|ref|ZP_19573489.1| ribonuclease Z [Enterococcus faecium E6045]
gi|447913076|ref|YP_007394488.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
gi|257812409|gb|EEV41167.1| ribonuclease Z [Enterococcus faecium 1,230,933]
gi|257816694|gb|EEV44022.1| ribonuclease Z [Enterococcus faecium 1,231,502]
gi|257820535|gb|EEV47683.1| ribonuclease Z [Enterococcus faecium 1,231,501]
gi|257825981|gb|EEV52607.1| ribonuclease Z [Enterococcus faecium 1,231,410]
gi|257828817|gb|EEV55424.1| ribonuclease Z [Enterococcus faecium 1,231,408]
gi|260074984|gb|EEW63300.1| ribonuclease Z [Enterococcus faecium C68]
gi|260078143|gb|EEW65849.1| ribonuclease Z [Enterococcus faecium TC 6]
gi|289162378|gb|EFD10236.1| ribonuclease Z [Enterococcus faecium D344SRF]
gi|291587551|gb|EFF19428.1| ribonuclease Z [Enterococcus faecium E1071]
gi|291593096|gb|EFF24676.1| ribonuclease Z [Enterococcus faecium E1636]
gi|291596527|gb|EFF27770.1| ribonuclease Z [Enterococcus faecium E1679]
gi|291599785|gb|EFF30789.1| ribonuclease Z [Enterococcus faecium U0317]
gi|291602321|gb|EFF32545.1| ribonuclease Z [Enterococcus faecium E1039]
gi|291605690|gb|EFF35129.1| ribonuclease Z [Enterococcus faecium E1162]
gi|313590810|gb|EFR69655.1| ribonuclease Z [Enterococcus faecium TX0133a01]
gi|313592151|gb|EFR70996.1| ribonuclease Z [Enterococcus faecium TX0133B]
gi|313594670|gb|EFR73515.1| ribonuclease Z [Enterococcus faecium TX0133A]
gi|313597431|gb|EFR76276.1| ribonuclease Z [Enterococcus faecium TX0133C]
gi|313641538|gb|EFS06118.1| ribonuclease Z [Enterococcus faecium TX0133a04]
gi|313645517|gb|EFS10097.1| ribonuclease Z [Enterococcus faecium TX0082]
gi|364090988|gb|EHM33509.1| ribonuclease Z [Enterococcus faecium E4452]
gi|364094529|gb|EHM36689.1| ribonuclease Z [Enterococcus faecium E4453]
gi|378938030|gb|AFC63102.1| Ribonuclease Z [Enterococcus faecium Aus0004]
gi|388533735|gb|AFK58927.1| ribonuclease Z [Enterococcus faecium DO]
gi|402920627|gb|EJX41125.1| ribonuclease Z [Enterococcus faecium V689]
gi|402922695|gb|EJX43048.1| ribonuclease Z [Enterococcus faecium S447]
gi|402926011|gb|EJX46085.1| ribonuclease Z [Enterococcus faecium R501]
gi|402931079|gb|EJX50679.1| ribonuclease Z [Enterococcus faecium R499]
gi|402934231|gb|EJX53599.1| ribonuclease Z [Enterococcus faecium R497]
gi|402935205|gb|EJX54474.1| ribonuclease Z [Enterococcus faecium R496]
gi|402938795|gb|EJX57772.1| ribonuclease Z [Enterococcus faecium R494]
gi|402943499|gb|EJX61981.1| ribonuclease Z [Enterococcus faecium P1986]
gi|402943978|gb|EJX62430.1| ribonuclease Z [Enterococcus faecium R446]
gi|402947915|gb|EJX66095.1| ribonuclease Z [Enterococcus faecium P1190]
gi|402954205|gb|EJX71846.1| ribonuclease Z [Enterococcus faecium P1140]
gi|402955195|gb|EJX72750.1| ribonuclease Z [Enterococcus faecium P1137]
gi|402962442|gb|EJX79381.1| ribonuclease Z [Enterococcus faecium ERV99]
gi|402963489|gb|EJX80351.1| ribonuclease Z [Enterococcus faecium P1139]
gi|402966254|gb|EJX82905.1| ribonuclease Z [Enterococcus faecium ERV69]
gi|402969804|gb|EJX86189.1| ribonuclease Z [Enterococcus faecium P1123]
gi|402974875|gb|EJX90882.1| ribonuclease Z [Enterococcus faecium ERV38]
gi|402974916|gb|EJX90916.1| ribonuclease Z [Enterococcus faecium ERV26]
gi|402980678|gb|EJX96266.1| ribonuclease Z [Enterococcus faecium ERV168]
gi|402982622|gb|EJX98074.1| ribonuclease Z [Enterococcus faecium ERV165]
gi|402986150|gb|EJY01294.1| ribonuclease Z [Enterococcus faecium ERV161]
gi|402990280|gb|EJY05155.1| ribonuclease Z [Enterococcus faecium ERV102]
gi|402995032|gb|EJY09518.1| ribonuclease Z [Enterococcus faecium ERV1]
gi|402998637|gb|EJY12885.1| ribonuclease Z [Enterococcus faecium E422]
gi|402999898|gb|EJY14064.1| ribonuclease Z [Enterococcus faecium E417]
gi|403004048|gb|EJY17881.1| ribonuclease Z [Enterococcus faecium C621]
gi|403006910|gb|EJY20520.1| ribonuclease Z [Enterococcus faecium C497]
gi|403011523|gb|EJY24819.1| ribonuclease Z [Enterococcus faecium C1904]
gi|403012306|gb|EJY25543.1| ribonuclease Z [Enterococcus faecium 515]
gi|403014515|gb|EJY27510.1| ribonuclease Z [Enterococcus faecium 514]
gi|403016581|gb|EJY29392.1| ribonuclease Z [Enterococcus faecium 513]
gi|403024797|gb|EJY36930.1| ribonuclease Z [Enterococcus faecium 510]
gi|403026321|gb|EJY38319.1| ribonuclease Z [Enterococcus faecium 511]
gi|403031005|gb|EJY42653.1| ribonuclease Z [Enterococcus faecium 509]
gi|403037105|gb|EJY48428.1| ribonuclease Z [Enterococcus faecium 506]
gi|403042354|gb|EJY53314.1| ribonuclease Z [Enterococcus faecium 503]
gi|404452700|gb|EJZ99854.1| Ribonuclease Z [Enterococcus sp. GMD4E]
gi|404456256|gb|EKA02985.1| Ribonuclease Z [Enterococcus sp. GMD3E]
gi|404461791|gb|EKA07650.1| Ribonuclease Z [Enterococcus sp. GMD2E]
gi|404467784|gb|EKA12848.1| Ribonuclease Z [Enterococcus sp. GMD1E]
gi|410733458|gb|EKQ75382.1| ribonuclease Z [Enterococcus sp. GMD5E]
gi|425724122|gb|EKU87006.1| ribonuclease Z [Enterococcus durans FB129-CNAB-4]
gi|430439699|gb|ELA50020.1| ribonuclease Z [Enterococcus faecium E0045]
gi|430443276|gb|ELA53261.1| ribonuclease Z [Enterococcus faecium E0120]
gi|430446162|gb|ELA55847.1| ribonuclease Z [Enterococcus faecium E0164]
gi|430483070|gb|ELA60169.1| ribonuclease Z [Enterococcus faecium E0333]
gi|430483355|gb|ELA60433.1| ribonuclease Z [Enterococcus faecium E0269]
gi|430486807|gb|ELA63643.1| ribonuclease Z [Enterococcus faecium E0679]
gi|430488888|gb|ELA65536.1| ribonuclease Z [Enterococcus faecium E0680]
gi|430492120|gb|ELA68534.1| ribonuclease Z [Enterococcus faecium E0688]
gi|430496930|gb|ELA72989.1| ribonuclease Z [Enterococcus faecium E1050]
gi|430536621|gb|ELA76988.1| ribonuclease Z [Enterococcus faecium E1185]
gi|430539115|gb|ELA79377.1| ribonuclease Z [Enterococcus faecium E1133]
gi|430541463|gb|ELA81608.1| ribonuclease Z [Enterococcus faecium E1258]
gi|430545608|gb|ELA85581.1| ribonuclease Z [Enterococcus faecium E1552]
gi|430548229|gb|ELA88134.1| ribonuclease Z [Enterococcus faecium E1392]
gi|430549428|gb|ELA89260.1| ribonuclease Z [Enterococcus faecium E1573]
gi|430553495|gb|ELA93181.1| ribonuclease Z [Enterococcus faecium E1574]
gi|430556342|gb|ELA95850.1| ribonuclease Z [Enterococcus faecium E1576]
gi|430558777|gb|ELA98183.1| ribonuclease Z [Enterococcus faecium E1575]
gi|430560894|gb|ELB00186.1| ribonuclease Z [Enterococcus faecium E1578]
gi|430571832|gb|ELB10706.1| ribonuclease Z [Enterococcus faecium E1620]
gi|430574852|gb|ELB13615.1| ribonuclease Z [Enterococcus faecium E1622]
gi|430577084|gb|ELB15689.1| ribonuclease Z [Enterococcus faecium E1623]
gi|430581365|gb|ELB19810.1| ribonuclease Z [Enterococcus faecium E1626]
gi|430583638|gb|ELB21996.1| ribonuclease Z [Enterococcus faecium E1627]
gi|430593897|gb|ELB31872.1| ribonuclease Z [Enterococcus faecium E1731]
gi|430603394|gb|ELB40919.1| ribonuclease Z [Enterococcus faecium E1904]
gi|430606441|gb|ELB43792.1| ribonuclease Z [Enterococcus faecium E2071]
gi|430609571|gb|ELB46755.1| ribonuclease Z [Enterococcus faecium E2134]
gi|430613334|gb|ELB50350.1| ribonuclease Z [Enterococcus faecium E2297]
gi|430619166|gb|ELB55994.1| ribonuclease Z [Enterococcus faecium E2883]
gi|430628445|gb|ELB64880.1| ribonuclease Z [Enterococcus faecium E4215]
gi|430631815|gb|ELB68115.1| ribonuclease Z [Enterococcus faecium E1321]
gi|430635489|gb|ELB71585.1| ribonuclease Z [Enterococcus faecium E1644]
gi|430637372|gb|ELB73395.1| ribonuclease Z [Enterococcus faecium E2369]
gi|430641785|gb|ELB77579.1| ribonuclease Z [Enterococcus faecium E2560]
gi|430644035|gb|ELB79738.1| ribonuclease Z [Enterococcus faecium E4389]
gi|430647433|gb|ELB82879.1| ribonuclease Z [Enterococcus faecium E6045]
gi|430648163|gb|ELB83586.1| ribonuclease Z [Enterococcus faecium E6012]
gi|445188785|gb|AGE30427.1| Ribonuclease Z [Enterococcus faecium NRRL B-2354]
Length = 313
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|314933681|ref|ZP_07841046.1| ribonuclease Z [Staphylococcus caprae C87]
gi|313653831|gb|EFS17588.1| ribonuclease Z [Staphylococcus caprae C87]
Length = 307
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 44/266 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + + ++ V+ +H I S GY I
Sbjct: 96 GIQNYIETSLKLSES----HLNYPITYIEINQQFTYHHEGFTVQAEVLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE-KLKKSGVEITDIIL-----------------SPEVAFTGD 254
LK +E K V+I D P +A GD
Sbjct: 152 APTTPGTINVEALKSIGLEPGPKYQEVKIQDTFEHNGLMYQSDDFKGEAKPGPIIAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E++L +NAD +++ EAT+++ + ++ A + H+H+ ++ + K
Sbjct: 212 TKPCDNEYVL-AKNAD-----VMVHEATYIEGDKTL--ANNYHHSHIDDVFQLIKNANVG 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSK 337
L+TH S+RY++ED+ ++ ++
Sbjct: 264 KSLITHISNRYNLEDVESIYKEINNQ 289
>gi|429082155|ref|ZP_19145242.1| Ribonuclease Z [Cronobacter condimenti 1330]
gi|426549109|emb|CCJ71283.1| Ribonuclease Z [Cronobacter condimenti 1330]
Length = 304
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 42/245 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P ++ P I E +E + S + L++
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEVYGPAGIAEFIETALRLSGSWTSYPLHIH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------G 227
+ +D GE ++V + H + GY I K LK G
Sbjct: 119 EITEGQVIDDGE-------LIVTAYPLTHPVVCYGYRIEEHEKPGTLDAAALKAAGVTPG 171
Query: 228 KQIEKLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALRA 271
++LK+ G +T D + +P +VA GDT T++ R+ D
Sbjct: 172 PLFQQLKR-GETVTLEDGRKLCGADYLSAPRPGKKVAIFGDTGPTAQAEALARDVD---- 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
L+ T L+ M+ E A GH+ + A+ K +++THFSSRY D ++ +
Sbjct: 227 --LMVHETTLEAAMA-EKANSRGHSTTHQAAALARDAGAKRLVMTHFSSRYSAADCQRLL 283
Query: 332 LKLQS 336
+ QS
Sbjct: 284 AECQS 288
>gi|18313915|ref|NP_560582.1| hypothetical protein PAE3218 [Pyrobaculum aerophilum str. IM2]
gi|41017572|sp|Q8ZTJ7.1|RNZ_PYRAE RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|18161484|gb|AAL64764.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 287
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 42/223 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ +TH H DHI GLP V + + + P S+ + KL
Sbjct: 58 TLIAVTHMHEDHILGLPGLVITSKFLGGRL-KVLAPKSMHGALSKL-------------- 102
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKKQYIHLKGKQIEKL 233
++V ++YE ++ + H + + G++I + L K K E +
Sbjct: 103 ---GVEVADSYE-EERFKIKCVEVCHTVDACGWLIQWDVGYKLDLSKTSGLPKWALTELI 158
Query: 234 KKSGVEITDIILSPE------------VAFTGDTTS--EFMLNPRNADALRAKILITEAT 279
K V+I D I++PE + +TGDT E + D +LI EAT
Sbjct: 159 KGKPVKIGDRIITPEEVADPAHKRFKYLLYTGDTAPCPEMWKKVGSVD-----VLIHEAT 213
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
F DD +S A + GH+ +++ IE A+ + + ++LTH S+RY
Sbjct: 214 FADD-VSPSKAHEEGHSTVADAIEAARALNAQVLILTHVSARY 255
>gi|448302492|ref|ZP_21492471.1| ribonuclease Z [Natronorubrum tibetense GA33]
gi|445581158|gb|ELY35520.1| ribonuclease Z [Natronorubrum tibetense GA33]
Length = 311
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 46/252 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSI 155
FD+G R + + + +F+TH H DHI GLP + + KP I P
Sbjct: 33 FDVGEGTQRQMMRFSTGFDISTIFLTHLHGDHILGLPGLLQTLDFNERTKPLEICTPAGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
DV++ + + + + +L + DVG + ++ ++ F+T H S GY +
Sbjct: 93 GTDVDQFLTASGTDPDYPVRIRELTSGDVGLEH---DEYTIQAFETEHRTRSLGYALVEA 149
Query: 215 RKKLK---KQYIHL---KGKQIEKL-KKSGVEITD-IILSPE-----------VAFTGDT 255
+K + ++ + L +G +L + + VE+TD ++ P+ V +TGDT
Sbjct: 150 ERKGRFDRERALELGVPEGPMFGRLHEGNSVELTDGTVIHPDQVVGDPRPGRRVVYTGDT 209
Query: 256 TSEFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
R D A A +LI +A F D ++ A+Q GH+ E A
Sbjct: 210 --------RPTDRTISIASDADLLIHDAMFAQDR--VDRARQTGHSTAEEAATVAHRADV 259
Query: 311 KAVLLTHFSSRY 322
K + LTH SSRY
Sbjct: 260 KQLALTHVSSRY 271
>gi|327311783|ref|YP_004338680.1| Ribonuclease Z [Thermoproteus uzoniensis 768-20]
gi|326948262|gb|AEA13368.1| Ribonuclease Z [Thermoproteus uzoniensis 768-20]
Length = 284
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
++V ITHGH DH+ GLP +++ + K + PP + + + G VE
Sbjct: 58 SYVAITHGHEDHVLGLPGLLSTAKMAG-KSLKVLAPPRLASALSR--------GGVE--- 105
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKKQYIHLKGKQIEKL 233
T + +R + H + + G++ + L K K + +
Sbjct: 106 -------AATSASDRHMSIRCVEVCHTVEACGWLFEWDVGFKLDLSKVEGFPKQALTKLI 158
Query: 234 KKSGVEITDIILSPE------------VAFTGDTTSEFMLNPRNADAL-RAKILITEATF 280
+ VE+ ++ PE + +TGDT P+ +A+ +LI EATF
Sbjct: 159 RGEAVEVGGRVVRPEDVAEPGHRRWRRLFYTGDTGP----CPKALEAVGWTDVLIHEATF 214
Query: 281 LDDEMSIEHAQQH--GHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
DD +E A+ H GH+ + + IE AK + + ++LTH S+RY
Sbjct: 215 ADD---VEPAKAHEEGHSTVLDAIEAAKALGARLLILTHISARY 255
>gi|418961583|ref|ZP_13513469.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
gi|380344115|gb|EIA32462.1| ribonuclease Z [Lactobacillus salivarius SMXD51]
Length = 317
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREARVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYYHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|427400749|ref|ZP_18891987.1| ribonuclease Z [Massilia timonae CCUG 45783]
gi|425720262|gb|EKU83185.1| ribonuclease Z [Massilia timonae CCUG 45783]
Length = 320
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 28/237 (11%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + VFITH H DH GLP +AS GL P TI PP ++ +E + +
Sbjct: 47 RTPLSVMSLRAVFITHMHGDHCYGLPGLLASAGLLGRSEPLTIVGPPPLRTMIECIMQA- 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ--GYVIYLLRKKLKKQYIH 224
S ++ L + D + D+ V H IPS G+ + ++L + +
Sbjct: 106 -SELSLPFPLAWLTPDDLAHGPLLPDLAVDATALSHRIPSWAYGFTEAAIERRLDTEKLR 164
Query: 225 L-------------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNAD 267
+G+ + + D +L P + GD S +L A
Sbjct: 165 ADAVPSSALWGEIQQGRDVVLPDGRAITAADYLLPPRRARRIVVAGDNDSPELL---AAG 221
Query: 268 ALRAKILITEATFLDDEMS-IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
A A +L+ EAT+ ++ + I QH +RN ++LTHFS RY
Sbjct: 222 AQGADVLVHEATYTEEVLQKIGPGPQHSSAMRVAHFAQGAGVRN--LVLTHFSPRYQ 276
>gi|381336943|ref|YP_005174718.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356644909|gb|AET30752.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 318
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 34/248 (13%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KLK++ I G +LK V + D + F G F
Sbjct: 152 IEKDHPGELLVDKLKQENIP-SGPVYGQLKAGKTVTLPDGRIVNGHDFIGKAQKGRIVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+L+ R D A A +L+ E+T+ E + A+ H H+ + A+ ++
Sbjct: 211 ILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAHVNKLV 270
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 271 LTHLSARY 278
>gi|295098087|emb|CBK87177.1| RNAse Z [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 45/239 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTLRLSGSWTDYPLEV- 118
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK-- 234
L++GE + D +VR + +H + GY + + K ++ Q + +K
Sbjct: 119 ---LEIGEGLVFDDGDYLVRAYPLNHPVECYGYRV---EEHDKPGALNAAALQADGVKPG 172
Query: 235 ------KSGVEIT----------DIILSPE----VAFTGDTT---SEFMLNPRNADALRA 271
K G +T D + P+ +A GDT S L R D
Sbjct: 173 PLFQRLKHGETVTLEDGRVINGQDYLAPPQPGKKLAIFGDTAPCPSALRL-ARGVD---- 227
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ EAT L+ M E A GH+ + + A+ + +++TH SSRY D+R A
Sbjct: 228 -VMVHEAT-LEAAME-EKANSRGHSSTRQAAQLAREAGVRKLIVTHVSSRY---DVRGA 280
>gi|240103139|ref|YP_002959448.1| ribonuclease Z [Thermococcus gammatolerans EJ3]
gi|259494146|sp|C5A5S2.1|RNZ_THEGJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|239910693|gb|ACS33584.1| Ribonuclease Z [Thermococcus gammatolerans EJ3]
Length = 314
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 107/267 (40%), Gaps = 38/267 (14%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTIRQMNSAKLSPMRVEKIFITHFHGDHYLGLGGLIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G ++ ++GET D + FK H IP+ GYV
Sbjct: 94 TFEFVQNFL----NSGFFRPGFEVHVHELGETRLKFKDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDTT 256
K+ K QY G + KL+K G +E ++ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAQYGLRPGPILGKLEKDGKIEWNGQVIRLEDVTGPRRRGVKVVYTGDTE 209
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
A RA +LI +AT+L D + + H+ + E E A+ + K + L
Sbjct: 210 P---CERVRLFAERADLLIHDATYLSDG---DRGDSY-HSTVEEACETARRAKVKLLALF 262
Query: 317 HFSSRYHIEDIRQAVLKLQSKVSAKVV 343
H + RY ++ K+ + V
Sbjct: 263 HRAFRYTYDEYLSGASKICQETGVNFV 289
>gi|427392476|ref|ZP_18886481.1| ribonuclease Z [Alloiococcus otitis ATCC 51267]
gi|425731437|gb|EKU94255.1| ribonuclease Z [Alloiococcus otitis ATCC 51267]
Length = 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 29/238 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP +++SR P T++ PP IK V+ + ++ +++ ++
Sbjct: 59 VFITHLHGDHIFGLPGFLSSRAFQGGASPLTLYGPPGIKSFVQTALTVSKT--HLKFPIN 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLKG-------K 228
V G+ + V K H I S G+ I KK L Q + G
Sbjct: 117 YVEFCDGDRVLSDDHFQVTVKKVKHGIDSFGFRIVERDKKGSLNSQALKEAGVPFGPLYG 176
Query: 229 QIEKLKKSGVEITDII-----LSPE-----VAFTGDTTSEFMLNPRNAD-ALRAKILITE 277
Q++ K+ +E II + P+ + GDT P D A A +L+ E
Sbjct: 177 QLKAGKQVTLEDGRIINGKDYIGPDIPGRKITIIGDTRP----CPNTLDLAQDADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
TF E + A+ + H+ E AK + + +LL H S+RY D+ + + + Q
Sbjct: 233 GTFSHQEKDL--AKAYNHSTSVEAARLAKEAQVQDLLLNHISARYLGPDLEEYLSQAQ 288
>gi|385265379|ref|ZP_10043466.1| ribonuclease Z [Bacillus sp. 5B6]
gi|385149875|gb|EIF13812.1| ribonuclease Z [Bacillus sp. 5B6]
Length = 308
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIR-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|431751691|ref|ZP_19540378.1| ribonuclease Z [Enterococcus faecium E2620]
gi|430614985|gb|ELB51955.1| ribonuclease Z [Enterococcus faecium E2620]
Length = 313
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 112/255 (43%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ V++ D + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETVQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|433456122|ref|ZP_20414179.1| ribonuclease Z [Arthrobacter crystallopoietes BAB-32]
gi|432196632|gb|ELK53070.1| ribonuclease Z [Arthrobacter crystallopoietes BAB-32]
Length = 298
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 28/253 (11%)
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
A Q + +TH H DH GLP ++ L ++ P P+ EDV + S G
Sbjct: 51 ATQITRICLTHVHGDHCYGLPGVLSRMALDGVQHPVYLHYPASGEDVVQALVSVASPG-- 108
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLK 226
+DL G + + VRP K H I + GY + LL K+L I
Sbjct: 109 ---IDLRLWPHGAGGPVAPGLEVRPLK--HRIETYGYRLAEPDGHTLLPKRLAAAGI--S 161
Query: 227 GKQIEKLKK----SGVEITDIIL---SPEVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
G I +L++ +GV + D+ + AF D T++ AD +L++E+T
Sbjct: 162 GPDIGRLQREGSLAGVRLEDVSVYRPGQSFAFVMD-TAQCSGAEELADG--TDLLVSEST 218
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVS 339
F DD+ S+ A Q+ H + A ++LTHFSSRY +D+ + ++
Sbjct: 219 FNDDDASL--AAQYRHLTAGQAGSLAAAGNTGTLVLTHFSSRYG-DDVTALADQARATAG 275
Query: 340 AKVVPLTEGFKSV 352
+ V + F +
Sbjct: 276 SATVVAAKDFDRI 288
>gi|448606638|ref|ZP_21659064.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
gi|445738846|gb|ELZ90358.1| ribonuclease Z [Haloferax sulfurifontis ATCC BAA-897]
Length = 317
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + + + + I PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 95 KRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTT 256
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 153 RPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGAVVRSEQVVGDPRPGRTVVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + LT
Sbjct: 213 P---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFALT 267
Query: 317 HFSSRY 322
H S+RY
Sbjct: 268 HISARY 273
>gi|431499524|ref|ZP_19515103.1| ribonuclease Z [Enterococcus faecium E1634]
gi|430588160|gb|ELB26365.1| ribonuclease Z [Enterococcus faecium E1634]
Length = 313
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D +L+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----VLVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|448727066|ref|ZP_21709443.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
gi|445792266|gb|EMA42877.1| ribonuclease Z [Halococcus morrhuae DSM 1307]
Length = 305
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ GLP + + + I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
K VE L + + + + V G ++ VR F+T H S GY L+
Sbjct: 93 KSAVENLVGVTGARPGYPIRVHEVQ--PGGVALREDEYEVRAFETDHRTRSVGYA--LVE 148
Query: 216 KKLKKQYIHLKGKQI--------EKLKKSG-VEITD-IILSPE-----------VAFTGD 254
K ++ + +++ KL + VE+ D ++ PE + +TGD
Sbjct: 149 DDRKGRFDRERAEELGVPAGPLFSKLHEGNPVELDDGTVVDPEQVVGEPRPGRRIVYTGD 208
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T +DA +LI EA+F +D E A + GH+ + E A K +
Sbjct: 209 TRPTAATTEAASDA---DLLIHEASFGEDRS--ERAGKTGHSTARQAAELATRADAKRLA 263
Query: 315 LTHFSSRYHIEDIRQAV 331
LTH SSRY E R A
Sbjct: 264 LTHVSSRYAGESDRLAA 280
>gi|294494977|ref|YP_003541470.1| RNAse Z [Methanohalophilus mahii DSM 5219]
gi|292665976|gb|ADE35825.1| RNAse Z [Methanohalophilus mahii DSM 5219]
Length = 312
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 108/250 (43%), Gaps = 43/250 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T + + +FI+H H DH+ G+P + + + P P
Sbjct: 42 FDCGEGTQQQMMRARTGMMSLSSIFISHFHADHVLGIPGLLQTLSFHGRDTPLTIYGPVW 101
Query: 156 KEDVEKLFEIHRSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
E KL + LG LN ++ V L+ G+ + R VV + H +PS Y +
Sbjct: 102 VEQFVKLVSL---LGYCRLNFEVKAVPLEAGDVVQ-REGYVVNAIASEHSVPSLAYALVE 157
Query: 213 ------LLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSP-----------EVAFTGD 254
R++ ++ + + G +L+K VE+ I+ P ++ +TGD
Sbjct: 158 NERPGKFDRRRAEEMGVPV-GPLYSRLQKGESVEVNGRIIHPNEVIGPSRRGRKLIYTGD 216
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T + +NAD +LI + T ++ + A++ H+ +E + AK K
Sbjct: 217 TRPCEAILEASKNAD-----VLIHDGTLAQEKA--DWARESLHSTANEAADVAKKAGVKR 269
Query: 313 VLLTHFSSRY 322
++LTH SSRY
Sbjct: 270 LILTHISSRY 279
>gi|379003792|ref|YP_005259464.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Pyrobaculum oguniense TE7]
gi|375159245|gb|AFA38857.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Pyrobaculum oguniense TE7]
Length = 287
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 43/235 (18%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLF 163
F IG P+ V +TH H DH+ GLP V + K + P S E + +L
Sbjct: 48 FQIGVAPS---SLTLVAVTHMHEDHVLGLPGLVITAKFLGGKV-KLLGPRSAHEVLSRL- 102
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKK 220
++V ++Y+ + +R + H + + G+++ + LKK
Sbjct: 103 ----------------GVEVADSYD-GGRLKIRCVEVCHTVDACGWLLEWDVGYKLDLKK 145
Query: 221 QYIHLKGKQIEKLKKSGVEITDIILSPE------------VAFTGDTTSEFMLNPRNADA 268
K + ++ VE+ ++ PE + +TGDT PR A
Sbjct: 146 VEGLPKWALTKLIRGEEVEVGGRVIRPEEVADPAHKRYRRLLYTGDTGP----CPRMLKA 201
Query: 269 L-RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ +LI EATF DD + + A + GH+ +++ +E AK +R ++LTH S+RY
Sbjct: 202 VGEVDVLIHEATFADD-VDPKKAHEEGHSTVADAVEAAKALRAGVLVLTHISARY 255
>gi|311068985|ref|YP_003973908.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|419820371|ref|ZP_14343982.1| ribonuclease Z [Bacillus atrophaeus C89]
gi|310869502|gb|ADP32977.1| ribonuclease Z [Bacillus atrophaeus 1942]
gi|388475523|gb|EIM12235.1| ribonuclease Z [Bacillus atrophaeus C89]
Length = 308
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P I+ +E + + + L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTIYGPKGIRAFIETSLNVTAT--RLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
++ ++ G +E + V H +P+ GY + L+ L K+ G +
Sbjct: 117 IIEIEEGVIFE-DDQFTVTAKPVIHGVPAFGYRVQEKDMPGALKADLLKEMKIPPGPIYQ 175
Query: 232 KLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
K+K+ G E+T D + P+ VAF+GDT + + A+ A +L+ E
Sbjct: 176 KIKQ-GEEVTLEDGRVINGRDFLDEPKKGRVVAFSGDTR---VCSNVKELAVDADVLVHE 231
Query: 278 ATFL--DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
ATF DD++ A + H+ + + AK K ++LTH S+RY E Q +L
Sbjct: 232 ATFAKGDDKL----AHDYFHSTTEQAAKTAKEAGAKKLILTHISARYQGEASLQMLL 284
>gi|430749963|ref|YP_007212871.1| ribonuclease Z [Thermobacillus composti KWC4]
gi|430733928|gb|AGA57873.1| ribonuclease Z [Thermobacillus composti KWC4]
Length = 312
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 34/233 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+F+TH H DH+ GLP + SR P T+ P I+ +E F I + + EL +
Sbjct: 59 IFVTHLHGDHVFGLPGLLGSRSSMGCDAPLTLHGPRGIRHWLETTFSITGAHVHYELEIR 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+ D G +E + V+ +H I GY I L KL + Y
Sbjct: 119 EIDGDGGVVHE-DDQFTVKAAPLNHRIACYGYRIEERPRPGRLDAAKLAELGVPQGPLYA 177
Query: 224 HLKGKQIEKLKKSGV-EITDIILSP----EVAFTGDTTSEFMLNPRNADALR----AKIL 274
LK + L+ V D++ P +A GDTT P +A A+R A ++
Sbjct: 178 QLKRGEDATLQDGRVIRAADVVGPPIPGRVIAILGDTT------PCDA-AIRLAEGADLV 230
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+ EATF + A ++GH+ +E A+ R +LLTHFS RY ED+
Sbjct: 231 VHEATF--EAALAGKAAEYGHSTTAEAARTARDARAARLLLTHFSGRYRDEDL 281
>gi|295398003|ref|ZP_06808059.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
gi|294973761|gb|EFG49532.1| ribonuclease Z [Aerococcus viridans ATCC 11563]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + P TI+ P IK ++ ++ R+ L D
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSHQGGESPVTIYGPKGIKAYIDNFLQVTRT----TLGYD 114
Query: 178 LVALDVG-ETYEMRNDIVVRPFKT-HHVIPSQGY-------VIYLLRKKLKKQYI----- 223
L+ ++ E +ND +KT H + S G+ V LL K ++ +
Sbjct: 115 LIIQELADEGMVFQNDQYQVLYKTLDHAVQSYGFRVIEADQVGELLIDKAREAGVPNGPL 174
Query: 224 --HLK-GKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADAL--RAKI 273
LK GK I + ++ D I P+ V GDT +NA AL A
Sbjct: 175 LGQLKQGKTITLEDGTQLDGRDFI-GPDKKGHIVTILGDTRYN-----KNAVALAKDADF 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ EATF E + A+ + H+ + + AK K +LLTH S+RY
Sbjct: 229 LVHEATFAAGEERM--ARNYYHSTAKQAGQVAKEANVKQLLLTHISARY 275
>gi|292654323|ref|YP_003534220.1| ribonuclease Z [Haloferax volcanii DS2]
gi|448293867|ref|ZP_21483970.1| ribonuclease Z [Haloferax volcanii DS2]
gi|342179243|sp|D4GZ88.1|RNZ_HALVD RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|291370702|gb|ADE02929.1| ribonuclease Z [Haloferax volcanii DS2]
gi|445569788|gb|ELY24359.1| ribonuclease Z [Haloferax volcanii DS2]
Length = 315
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 213 -----LLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
LN A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 210 RP---LNSTVEVACDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 264
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 265 THISARY 271
>gi|226484716|emb|CAX74267.1| Nuclear ribonuclease Z [Schistosoma japonicum]
Length = 125
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 81 YTIEGVSIGGHETCVIIPELK--CAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
+ I G S+ G+ETCV + + FDIG P + +++FI+HGH DHIG + ++
Sbjct: 9 FEIFGWSVAGNETCVAVRKNGKVFGFDIGFSPRPLVLADYIFISHGHADHIGAITQHMKK 68
Query: 139 RGLYNLKPPTIFVP 152
R L L+ T F+P
Sbjct: 69 RALNGLRGATYFMP 82
>gi|431430744|ref|ZP_19512884.1| ribonuclease Z [Enterococcus faecium E1630]
gi|431759059|ref|ZP_19547676.1| ribonuclease Z [Enterococcus faecium E3346]
gi|430587768|gb|ELB25985.1| ribonuclease Z [Enterococcus faecium E1630]
gi|430626684|gb|ELB63250.1| ribonuclease Z [Enterococcus faecium E3346]
Length = 313
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR + P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQSGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETAPIFTDQQFSVYTKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P+ V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPDKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISPRY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|425073511|ref|ZP_18476617.1| ribonuclease Z [Proteus mirabilis WGLW4]
gi|404595196|gb|EKA95747.1| ribonuclease Z [Proteus mirabilis WGLW4]
Length = 305
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I V H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQDGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D + A GH+ + E AK K +++TH SSRY
Sbjct: 230 VHEATFKHD--MADKANSRGHSSTIQAAELAKKANAKRLIITHISSRY 275
>gi|228476129|ref|ZP_04060837.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|314936370|ref|ZP_07843717.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|418619914|ref|ZP_13182725.1| ribonuclease Z [Staphylococcus hominis VCU122]
gi|228269952|gb|EEK11432.1| ribonuclease Z [Staphylococcus hominis SK119]
gi|313654989|gb|EFS18734.1| ribonuclease Z [Staphylococcus hominis subsp. hominis C80]
gi|374823477|gb|EHR87472.1| ribonuclease Z [Staphylococcus hominis VCU122]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTLIGPT 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+++ +E ++ S N + + +D TY + V +H IPS GY I
Sbjct: 96 GLQQFIETALKLSESHLNYPIT--YIEIDNNFTYH-HHGFTVSSRLLNHGIPSYGYRIEA 152
Query: 214 LRKKLKKQYIHLKGKQIE-KLKKSGVEITD-------IILS----------PEVAFTGDT 255
LK +E K V++ D I LS P V GDT
Sbjct: 153 PTTPGTIDVTALKAIGLEPGPKYQEVKMFDTFEYNNQIYLSKDFKGPAKPGPIVTIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
+E++L A A I+I EAT+++ + + A + H+H+ ++ K
Sbjct: 213 KPCDNEYIL------AENADIMIHEATYIEGDKIL--ANNYHHSHIDDVFRLIHQSNVKK 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
+TH S+RY++EDI +
Sbjct: 265 SFITHLSNRYNLEDIEE 281
>gi|301300910|ref|ZP_07207082.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851509|gb|EFK79221.1| ribonuclease Z [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 317
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T + ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKILAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|298368726|ref|ZP_06980044.1| ribonuclease Z [Neisseria sp. oral taxon 014 str. F0314]
gi|298282729|gb|EFI24216.1| ribonuclease Z [Neisseria sp. oral taxon 014 str. F0314]
Length = 307
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 56/261 (21%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLK--PPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP ++SR P +++ P I+ VE E+ ++ + +N
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFLGGADGPLSLYGPAGIRRFVESALEVSQTQLSYPINF 118
Query: 177 -----DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
D + LD GE V F H +PS Y I ++ G QI+
Sbjct: 119 HEFVSDGLILDDGE-------FTVSAFGLAHSLPSFAYRI--------EEKERAGGLQID 163
Query: 232 KLKKSGVEITDII----------------------LSPE-----VAFTGDTTSEFMLNPR 264
+L++ G+ ++ LSP +A GDT
Sbjct: 164 RLRELGIPSGPLLGRLKNGETVTLDDGRLIDGKEYLSPPRKGRIIAVFGDTKP---CRSA 220
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
A A A +L+ EATF + ++ A++ H+ +S+ A K + LTH S+RY
Sbjct: 221 LAAAEGADVLVHEATFAAGDEAM--AEKVFHSTVSDAANLAAEAGVKQLYLTHISARYAD 278
Query: 325 EDIRQAVLKLQSKV--SAKVV 343
E+ RQ + + + ++KVV
Sbjct: 279 EEQRQMLERQAQNIFPASKVV 299
>gi|417647087|ref|ZP_12296936.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
gi|329725436|gb|EGG61919.1| ribonuclease Z [Staphylococcus epidermidis VCU144]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYTITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE--------KLKKSGVEITDIILS-----------PEVAFTG 253
L+G +E KL+++ E +I + P ++ G
Sbjct: 152 APITPGTINVEALRGIGLEPGPKYQEVKLQET-FEYKGLIYNSDDFKGKAKPGPIISIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 211 DTKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANV 262
Query: 311 KAVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 263 NKSLITHISNRYNIDEV 279
>gi|257887532|ref|ZP_05667185.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|431034937|ref|ZP_19491814.1| ribonuclease Z [Enterococcus faecium E1590]
gi|431761784|ref|ZP_19550346.1| ribonuclease Z [Enterococcus faecium E3548]
gi|257823586|gb|EEV50518.1| ribonuclease Z [Enterococcus faecium 1,141,733]
gi|430563652|gb|ELB02861.1| ribonuclease Z [Enterococcus faecium E1590]
gi|430624476|gb|ELB61126.1| ribonuclease Z [Enterococcus faecium E3548]
Length = 313
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLKDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|418325402|ref|ZP_12936608.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
gi|365228004|gb|EHM69189.1| ribonuclease Z [Staphylococcus epidermidis VCU071]
Length = 306
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 44/256 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + N +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKINHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS-----------PEVAFTGD 254
+ + L+ + K E + E +I + P ++ GD
Sbjct: 152 APITPGTINVEALRDIGLEPGPKYQEVKLQETFEYKGLIYNSDDFKGKAKPGPIISIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 212 TKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVN 263
Query: 312 AVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 264 KSLITHISNRYNIDEV 279
>gi|357009736|ref|ZP_09074735.1| ribonuclease Z [Paenibacillus elgii B69]
Length = 322
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 109/261 (41%), Gaps = 44/261 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + +FITH H DHI GLP ++SR P TI+ P
Sbjct: 36 FDCGEGTQHQILRAPVKISKLEKLFITHLHGDHIYGLPGLMSSRSYQGGDTPFTIYGPVG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY 212
I+E VE I S ++ +V + + + D +V+ H + S GY I
Sbjct: 96 IREFVETALRISDS--HLSYQTKIVEFEEKVEFVLYEDEQFIVKAAPLVHRVDSYGYRIE 153
Query: 213 LLRKKLKKQYIHLK------GKQIEKLKK---------SGVEITDIILSPE----VAFTG 253
+K K LK G K+KK + +E + I P V G
Sbjct: 154 EKPQKGKLDAAKLKELGIASGPLYGKIKKGEAVTLEDGTVLEASRFIGPPVPGRIVTILG 213
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + R AD +L+ EATF +D + A Q+ H+ + A+ K
Sbjct: 214 DTQPCEHAVTLARQAD-----VLVHEATFAEDRKEL--AMQYDHSTAMDAARTAQEAGVK 266
Query: 312 AVLLTHFSSRYH---IEDIRQ 329
++LTH SSRY +E +R+
Sbjct: 267 MLVLTHISSRYQDAEVERLRE 287
>gi|295110706|emb|CBL24659.1| RNAse Z [Ruminococcus obeum A2-162]
Length = 303
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 36/226 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL--- 225
++ ++V + +E+ N + F+ +H + GY I +LR+ + ++Q I L
Sbjct: 111 EIKFIEVTKPFEVLELNGYRINAFRVNHNVICYGYTIEILRQGKFSPERAREQEIPLKYW 170
Query: 226 ----KGKQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
KG+ IE GV T D++L P+ V +T DT T + N N+D +
Sbjct: 171 NPLQKGRTIE---ADGVVYTPDMVLGPDRKGIKVTYTTDTRPTESILRNAVNSD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
I E + +E IE A+ + H E AK K + LTH+S
Sbjct: 223 FICEGMY-GEEDKIEKAKGYKHMTFREAATLAKDAGVKELWLTHYS 267
>gi|227357968|ref|ZP_03842310.1| ribonuclease Z [Proteus mirabilis ATCC 29906]
gi|227161703|gb|EEI46735.1| ribonuclease Z [Proteus mirabilis ATCC 29906]
Length = 317
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 69 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 126
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I V H +P GY + K K L+ + I
Sbjct: 127 LDIIEIEQDGFLFEEEGIRVSCGALSHPVPCFGYRLEEDNKPGKLNADKLEAENIPRGPW 186
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 187 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 241
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D + A GH+ + E AK K +++TH SSRY
Sbjct: 242 VHEATFKHD--MADKANSRGHSSTIQAAELAKKANAKRLIITHISSRY 287
>gi|297582766|ref|YP_003698546.1| ribonuclease Z [Bacillus selenitireducens MLS10]
gi|297141223|gb|ADH97980.1| ribonuclease Z [Bacillus selenitireducens MLS10]
Length = 309
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 117/284 (41%), Gaps = 51/284 (17%)
Query: 70 AVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCA----FDIGRCPTRAIQQNFVFITHGH 125
A+V KG+D G + C +I C I P +A VFITH H
Sbjct: 21 AMVMKGVD------------GKKACWMI---DCGEGTQHQILHAPIKAGAITKVFITHLH 65
Query: 126 LDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184
DH+ GLP ++ SR P T++ P ++ +E+ + S ++ L + ++ G
Sbjct: 66 GDHLYGLPGFLGSRSFQGADQPLTVYGPSGLRPYIEQSLAV--SGTHLTYPLTVHEVEEG 123
Query: 185 ETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQIEKLKKSG 237
E + N + H +PS GY L R++L K I G + LK+
Sbjct: 124 EIVDDGN-WRISCLALDHRMPSFGYRFDEKEQPGRLDRERLLKDDIP-SGPWLGDLKEQK 181
Query: 238 ---------VEITDIILSP----EVAFTGDTTSEFMLNPRNAD-ALRAKILITEATFLDD 283
V+ D + P + GDT P AD A A +L+ EATF+
Sbjct: 182 TVTLPDGRVVDGRDYVTEPVKGRRIVILGDTRP----MPAVADFAKEADLLVHEATFMAG 237
Query: 284 EMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E E A + H+ + E A+ +LLTH S+RY D+
Sbjct: 238 ER--ETADRFAHSTTLDAAEIARQADVSRLLLTHISARYKAADM 279
>gi|124486183|ref|YP_001030799.1| hypothetical protein Mlab_1365 [Methanocorpusculum labreanum Z]
gi|124363724|gb|ABN07532.1| ribonuclease Z [Methanocorpusculum labreanum Z]
Length = 312
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 58/252 (23%)
Query: 117 NFVFITHGHLDH---IGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
N VFITH H DH I GL +A G +P T++ P I V IH+ +
Sbjct: 58 NAVFITHWHADHYLGIFGLIETMAFNG--RTEPLTLYGPRGIDWFVNI---IHQLTPKIP 112
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGK----- 228
L + + G+ M + V F+T H + S GYV L + ++ +G
Sbjct: 113 FTLSAIEVSDGDVI-MFDGYSVVAFRTFHGMESIGYV---LEEDMRPGRFDREGAISLGV 168
Query: 229 ----QIEKLKKSGVEIT------DIILSPE-----------VAFTGDT-----TSEFMLN 262
KL++ G +T ++ ++PE V +TGDT E + N
Sbjct: 169 KPGPMFGKLQR-GSPVTILRGDEEVTITPEMVMGERRRGRKVVYTGDTRPVKNQPELLAN 227
Query: 263 PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
A +LI EATF D+E E A++ H+ E + A ++ K + L HFSSRY
Sbjct: 228 --------ADLLIHEATF-DEEEGSERAKEAWHSTACEAGQVAALVKPKILALVHFSSRY 278
Query: 323 -----HIEDIRQ 329
HI+D ++
Sbjct: 279 ITAASHIKDAKE 290
>gi|417788529|ref|ZP_12436212.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
gi|334308706|gb|EGL99692.1| ribonuclease Z [Lactobacillus salivarius NIAS840]
Length = 317
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 115/260 (44%), Gaps = 38/260 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISNFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREARVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
Y LK ++ L+ ++ D I + V GDT T L ++AD +L
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTVLGDTRQTPNLKLLAKDAD-----VL 231
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 232 VHESTFGKGEGKL--ARNYYHSTCVQAATLAKKVGVKQLLLTHISARY-----VGKMVKV 284
Query: 335 QSKVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 285 LEKEAKKVFPNTKVVKDFDT 304
>gi|271498588|ref|YP_003331613.1| ribonuclease Z [Dickeya dadantii Ech586]
gi|270342143|gb|ACZ74908.1| ribonuclease Z [Dickeya dadantii Ech586]
Length = 304
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 42/271 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + +FITH H DH+ GLP + SR + ++ P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGKLEKIFITHLHGDHLFGLPGLLCSRSMAGVETPLTLYGPTG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+K VE + S + L++V + G +E + V + H + GY I L
Sbjct: 96 LKTFVETALTLSGSW--LTYPLEVVEIVPGTVFE-DHQFRVTAHELSHTLYCVGYRIEEL 152
Query: 215 RK-------KLKKQYIHLKGKQIEKLKKSGVEITD--------IILSP-----EVAFTGD 254
K KL Q + G ++LK+ D L P +A GD
Sbjct: 153 PKPGALDVEKLAAQGVK-PGAYFQQLKRGETVTLDDGRVLNGWDYLGPGLPGKSLAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T T E + D +++ EAT ++ M+ E A + GH+ + A+ K
Sbjct: 212 TRPTPEALKLAAGVD-----VMVHEAT-VEGAMA-ERANERGHSTTLQTAATARDAGAKR 264
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
+++THFS+RY ED+ + + Q+ A V
Sbjct: 265 LIITHFSARYGREDLERLRQECQTLFPATEV 295
>gi|227551356|ref|ZP_03981405.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257896027|ref|ZP_05675680.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257898655|ref|ZP_05678308.1| ribonuclease Z [Enterococcus faecium Com15]
gi|293378801|ref|ZP_06624958.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|293570538|ref|ZP_06681593.1| ribonuclease Z [Enterococcus faecium E980]
gi|424763632|ref|ZP_18191102.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|425054097|ref|ZP_18457612.1| ribonuclease Z [Enterococcus faecium 505]
gi|430841145|ref|ZP_19459064.1| ribonuclease Z [Enterococcus faecium E1007]
gi|431071397|ref|ZP_19494368.1| ribonuclease Z [Enterococcus faecium E1604]
gi|431104268|ref|ZP_19496992.1| ribonuclease Z [Enterococcus faecium E1613]
gi|431582257|ref|ZP_19520206.1| ribonuclease Z [Enterococcus faecium E1861]
gi|431737852|ref|ZP_19526804.1| ribonuclease Z [Enterococcus faecium E1972]
gi|431740270|ref|ZP_19529187.1| ribonuclease Z [Enterococcus faecium E2039]
gi|431756532|ref|ZP_19545164.1| ribonuclease Z [Enterococcus faecium E3083]
gi|227179475|gb|EEI60447.1| ribonuclease Z [Enterococcus faecium TX1330]
gi|257832592|gb|EEV59013.1| ribonuclease Z [Enterococcus faecium Com12]
gi|257836567|gb|EEV61641.1| ribonuclease Z [Enterococcus faecium Com15]
gi|291609484|gb|EFF38751.1| ribonuclease Z [Enterococcus faecium E980]
gi|292642594|gb|EFF60747.1| ribonuclease Z [Enterococcus faecium PC4.1]
gi|402422529|gb|EJV54766.1| ribonuclease Z [Enterococcus faecium TX1337RF]
gi|403036622|gb|EJY47965.1| ribonuclease Z [Enterococcus faecium 505]
gi|430493921|gb|ELA70171.1| ribonuclease Z [Enterococcus faecium E1007]
gi|430567030|gb|ELB06116.1| ribonuclease Z [Enterococcus faecium E1604]
gi|430569856|gb|ELB08835.1| ribonuclease Z [Enterococcus faecium E1613]
gi|430594147|gb|ELB32117.1| ribonuclease Z [Enterococcus faecium E1861]
gi|430598458|gb|ELB36199.1| ribonuclease Z [Enterococcus faecium E1972]
gi|430603806|gb|ELB41319.1| ribonuclease Z [Enterococcus faecium E2039]
gi|430620386|gb|ELB57188.1| ribonuclease Z [Enterococcus faecium E3083]
Length = 313
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 39/255 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + +FITH H DHI GLP ++SR P I+ P I+E ++ +
Sbjct: 48 RTTIRPRKIGKIFITHLHGDHIFGLPGLISSRSFQGGDTPLEIYGPKGIEEYIK----VS 103
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
+ L+ L +++ ET + D V K +H I S GY + K + Q
Sbjct: 104 LGISQTRLSYPLKFIELNETDPIFTDQQFSVYAKKLNHGIDSFGYRVVEHDHKGELQVDR 163
Query: 225 LK------GKQIEKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNP 263
LK G KLK+ +++ D + P V GDT T ++
Sbjct: 164 LKELGIPAGPLYGKLKQGETIQLEDGRTINGKDFVGPNKKGRIVTILGDTRKTHNSVVLA 223
Query: 264 RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
N+D IL+ E+TF DE + H H TH + E AK + K +LLTH S+RY
Sbjct: 224 ENSD-----ILVHESTFNKDEARMAHNYFHSTTH--QAAEVAKEAQAKRLLLTHISARY- 275
Query: 324 IEDIRQAVLKLQSKV 338
+ +A L+L+ +
Sbjct: 276 ---LGKAALELEKEA 287
>gi|359415739|ref|ZP_09208146.1| ribonuclease Z [Candidatus Haloredivivus sp. G17]
gi|358033889|gb|EHK02387.1| ribonuclease Z [Candidatus Haloredivivus sp. G17]
Length = 301
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 41/247 (16%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD G R + + VFI+H H DH GL + + L +P I+ PP
Sbjct: 33 FDCGEGTQRTLMSEKLGIMKIDKVFISHWHADHFSGLLGLIQTMELEGRERPLYIYGPPR 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYL 213
+E +++ + G + D+ D+ E E+ D VRPF+ H I + G+
Sbjct: 93 TEEFTDRILDT----GYFNRSYDIFVEDLVEGDEIVGDGYQVRPFEVDHGINAFGFSFEE 148
Query: 214 LRKKL----KKQYIHLKG-------KQIEKLKKSGVEIT-----DIILSPEVAFTGDT-- 255
K K + + L+ K+ E + +G EI + + +V ++GDT
Sbjct: 149 ESSKKANKDKMKELELENSPKIGELKEGETIDWNGEEIRPEEVIEKMPGRKVVYSGDTAK 208
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ + N +AD +LI EAT L + + + GHT + E AK + ++L
Sbjct: 209 SDNLIQNAEDAD-----LLIHEATCLHEMIE----DRKGHTSALQAAEVAKEASVEKLIL 259
Query: 316 THFSSRY 322
THFS RY
Sbjct: 260 THFSRRY 266
>gi|327400955|ref|YP_004341794.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
gi|327316463|gb|AEA47079.1| Ribonuclease Z [Archaeoglobus veneficus SNP6]
Length = 303
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 43/249 (17%)
Query: 104 FDIGRCPTR-------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIK 156
FD G R + + +FITH H DH GL + + L + P+ +
Sbjct: 35 FDCGEGTQRQMMIAKTGFKLDAIFITHLHTDHFIGLFGLLETMSLNERREKLAIYSPNAR 94
Query: 157 EDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLR 215
L + ++ G EL+ + +++ + E++ D V FKT H++PS GY L+
Sbjct: 95 ----FLASLFKAFGYDELSYPIEVVELRDGDEVKFDGFKVVAFKTDHIVPSLGYA--LIE 148
Query: 216 KKLKKQYIHLKGKQI---------EKLKKSGVEITDIILSPE-----------VAFTGDT 255
K ++ K + + + +K V + +++PE + +TGDT
Sbjct: 149 KDRPGKFYREKAEALGIPPGPLYAKLVKGESVVVGGKVITPEMVVGKPRPGRKIVYTGDT 208
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
+ R+AD +LI +A F D E A++ H+ E E AK K +
Sbjct: 209 RPCERTIEIARSAD-----VLIHDAAFTSDLQ--EWAEETKHSTAREAAEVAKAAGVKKL 261
Query: 314 LLTHFSSRY 322
+LTH S+RY
Sbjct: 262 VLTHVSARY 270
>gi|227891089|ref|ZP_04008894.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
gi|227866963|gb|EEJ74384.1| ribonuclease Z [Lactobacillus salivarius ATCC 11741]
Length = 317
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 114/258 (44%), Gaps = 34/258 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR G + P TI+ P I + V ++ ++ + ELN
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEKMGPLTIYGPKGISDFVNISLKVSQTKLSYELN 118
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
V L+ + V +K H I GY I L +KL++
Sbjct: 119 --FVELEEEGLLLENDRFKVYAYKLDHRIECWGYRIEEKDYPGELQVEKLREAKVPSGPI 176
Query: 222 YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
Y LK ++ L+ ++ D I + V GDT L D A++L+
Sbjct: 177 YGRLKAGEVVTLEDGRTIDGKDFIGKAKKGRIVTILGDTRQTPNLKLLAKD---AEVLVH 233
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E+TF E + A+ + H+ + AK + K +LLTH S+RY ++K+
Sbjct: 234 ESTFGKGEGKL--ARNYHHSTCVQAATLAKEVGVKQLLLTHISARY-----VGKMVKVLE 286
Query: 337 KVSAKVVPLTEGFKSVYT 354
K + KV P T+ K T
Sbjct: 287 KEAKKVFPNTKVVKDFDT 304
>gi|341581908|ref|YP_004762400.1| ribonuclease Z [Thermococcus sp. 4557]
gi|340809566|gb|AEK72723.1| ribonuclease Z [Thermococcus sp. 4557]
Length = 314
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 106/251 (42%), Gaps = 48/251 (19%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + +FITH H DH GL + + L++ KP I+ P
Sbjct: 34 FDVGEGTMRQMNTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
E V+ + G D+ ++GET D + FK H +P+ GYV
Sbjct: 94 TFEFVQHFLQS----GFFRPGFDIHVHELGETRLKFGDYEIWSFKVEHGVPALGYV---F 146
Query: 215 RKKLKK---------QYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K ++ +Y +G + KL++ G +E I+ E V +TG
Sbjct: 147 REKDRRGKFLPEKLAEYGLSEGPILGKLEREGKIEWNGRIIRLEDVTGPRRKGLKVVYTG 206
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT L NAD +LI EAT+L+ E + + H+ + E E AK + K
Sbjct: 207 DTEPAERVRLFAENAD-----LLIHEATYLNSE---DRGDSY-HSTVEEACEVAKKAKVK 257
Query: 312 AVLLTHFSSRY 322
+ L H + RY
Sbjct: 258 LLALFHRAFRY 268
>gi|403668163|ref|ZP_10933440.1| ribonuclease Z [Kurthia sp. JC8E]
Length = 318
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLG-NVELNL 176
+FITH H DHI GLP ++ SR P TI+ P IKE VE +R G ++ +
Sbjct: 59 IFITHLHGDHIFGLPGFLGSRSFLGGDTPLTIYGPTGIKEWVEM---TNRLTGTHLTYPI 115
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK-----KQYIHL---KGK 228
V + G +E V HVIP GY + +K L ++ I L KG
Sbjct: 116 HFVEVTDGVVFEDEQFCVTAKL-LEHVIPCYGYRVE--QKPLSGALDLEKAISLGVPKGP 172
Query: 229 QIEKLKKS---------GVEITDIILSPEVAFTGDTTSEFMLNPRNAD-ALRAKILITEA 278
+ +LK V D+ +P FT + A+ A A ILI EA
Sbjct: 173 LLGQLKAGEAVRLEDGRTVYSEDVTGAPVQGFTVTILGDTRFCESAAELAQNATILIHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
TF D + A Q+GH+ + A+ +LL H S+R+ DI +
Sbjct: 233 TF--DASTANLASQYGHSTNVDAATIAEQANVDTLLLNHISARFLKHDIER 281
>gi|424843256|ref|ZP_18267881.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Saprospira grandis DSM 2844]
gi|395321454|gb|EJF54375.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Saprospira grandis DSM 2844]
Length = 304
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 115/262 (43%), Gaps = 42/262 (16%)
Query: 94 CVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
C+I C + R +A Q +FI+H H DH+ GL + S GL K ++ P
Sbjct: 34 CLIDCGEGCQISVQRYQLKAFQIKDIFISHLHGDHVLGLMGLLMSFGLNQRKKKLRLYGP 93
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV-------VRPFKTHHVIP 205
I+E VE + L N L+ L++ E R++++ V H +
Sbjct: 94 KGIREWVE----VQMRLMNAYLS---YPLEIRECDSERSELLLDSPSFQVFSLPLAHRVA 146
Query: 206 SQGYVIYLLRKKLKKQYIHLKGKQIEKLK---------KSGVEITD----------IILS 246
QG++ K K + +++ +I +L+ K+G TD +
Sbjct: 147 CQGFLF-----KEKPAHPNMRKDRILELEIPFRQIPAIKAGGGFTDAEGKFWPHEELCTP 201
Query: 247 PEVAFTGDTTSEFMLNPRNADALRA-KILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
P T S+ +P A+ +R +L EATFL + +E+A++ GH+ + E A
Sbjct: 202 PPPPRTYAYCSDTAFHPPLAELIRGVDLLYHEATFLHN--LLENAKKTGHSTAKQAGEMA 259
Query: 306 KWIRNKAVLLTHFSSRYHIEDI 327
K + K +L+ HFS+RY + +
Sbjct: 260 KLAQVKKLLIGHFSTRYQDKKV 281
>gi|57866978|ref|YP_188643.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|293366536|ref|ZP_06613213.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|417659675|ref|ZP_12309275.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|417908627|ref|ZP_12552384.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|417912271|ref|ZP_12555966.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|418605787|ref|ZP_13169094.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|418613296|ref|ZP_13176310.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|418616208|ref|ZP_13179133.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|418621838|ref|ZP_13184603.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|418625083|ref|ZP_13187741.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|418627723|ref|ZP_13190293.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|418629145|ref|ZP_13191659.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|419769414|ref|ZP_14295508.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|419771738|ref|ZP_14297784.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|420170215|ref|ZP_14676776.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|420172556|ref|ZP_14679055.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|420183166|ref|ZP_14689299.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|420187293|ref|ZP_14693314.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|420194801|ref|ZP_14700598.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|420197384|ref|ZP_14703108.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|420201633|ref|ZP_14707243.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|420206178|ref|ZP_14711688.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|420209009|ref|ZP_14714447.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|420211167|ref|ZP_14716541.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|420213963|ref|ZP_14719243.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|420215960|ref|ZP_14721185.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|420219162|ref|ZP_14724196.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|420221710|ref|ZP_14726637.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|420225700|ref|ZP_14730527.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|420227288|ref|ZP_14732060.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|420229607|ref|ZP_14734313.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|420232021|ref|ZP_14736663.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
gi|76363382|sp|Q5HP47.1|RNZ_STAEQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|57637636|gb|AAW54424.1| AtsA/ElaC family protein [Staphylococcus epidermidis RP62A]
gi|291319305|gb|EFE59674.1| ribonuclease Z [Staphylococcus epidermidis M23864:W2(grey)]
gi|329735312|gb|EGG71604.1| ribonuclease Z [Staphylococcus epidermidis VCU045]
gi|341651282|gb|EGS75087.1| ribonuclease Z [Staphylococcus epidermidis VCU105]
gi|341655988|gb|EGS79711.1| ribonuclease Z [Staphylococcus epidermidis VCU037]
gi|374401490|gb|EHQ72563.1| ribonuclease Z [Staphylococcus epidermidis VCU041]
gi|374816231|gb|EHR80438.1| ribonuclease Z [Staphylococcus epidermidis VCU117]
gi|374821034|gb|EHR85101.1| ribonuclease Z [Staphylococcus epidermidis VCU120]
gi|374825971|gb|EHR89887.1| ribonuclease Z [Staphylococcus epidermidis VCU125]
gi|374828266|gb|EHR92105.1| ribonuclease Z [Staphylococcus epidermidis VCU123]
gi|374828870|gb|EHR92693.1| ribonuclease Z [Staphylococcus epidermidis VCU126]
gi|374834576|gb|EHR98215.1| ribonuclease Z [Staphylococcus epidermidis VCU127]
gi|383358033|gb|EID35494.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-250]
gi|383360557|gb|EID37952.1| ribonuclease Z [Staphylococcus aureus subsp. aureus IS-K]
gi|394240553|gb|EJD85976.1| ribonuclease Z [Staphylococcus epidermidis NIHLM070]
gi|394241717|gb|EJD87126.1| ribonuclease Z [Staphylococcus epidermidis NIHLM067]
gi|394249629|gb|EJD94842.1| ribonuclease Z [Staphylococcus epidermidis NIHLM049]
gi|394256272|gb|EJE01205.1| ribonuclease Z [Staphylococcus epidermidis NIHLM039]
gi|394263861|gb|EJE08582.1| ribonuclease Z [Staphylococcus epidermidis NIHLM021]
gi|394266191|gb|EJE10837.1| ribonuclease Z [Staphylococcus epidermidis NIHLM020]
gi|394271901|gb|EJE16380.1| ribonuclease Z [Staphylococcus epidermidis NIHLM018]
gi|394278017|gb|EJE22334.1| ribonuclease Z [Staphylococcus epidermidis NIHLM008]
gi|394279237|gb|EJE23545.1| ribonuclease Z [Staphylococcus epidermidis NIHLM003]
gi|394281620|gb|EJE25846.1| ribonuclease Z [Staphylococcus epidermidis NIHLM001]
gi|394283885|gb|EJE28046.1| ribonuclease Z [Staphylococcus epidermidis NIH05005]
gi|394290336|gb|EJE34200.1| ribonuclease Z [Staphylococcus epidermidis NIH08001]
gi|394290860|gb|EJE34705.1| ribonuclease Z [Staphylococcus epidermidis NIH04008]
gi|394292956|gb|EJE36689.1| ribonuclease Z [Staphylococcus epidermidis NIH05001]
gi|394293134|gb|EJE36857.1| ribonuclease Z [Staphylococcus epidermidis NIH06004]
gi|394297378|gb|EJE40979.1| ribonuclease Z [Staphylococcus epidermidis NIH05003]
gi|394299373|gb|EJE42924.1| ribonuclease Z [Staphylococcus epidermidis NIH04003]
gi|394301743|gb|EJE45197.1| ribonuclease Z [Staphylococcus epidermidis NIH051668]
Length = 306
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE--------KLKKSGVEITDIILS-----------PEVAFTG 253
L+G +E KL+++ E +I + P ++ G
Sbjct: 152 APITPGTINVEALRGIGLEPGPKYQEVKLQET-FEYKGLIYNSDDFKGKAKPGPIISIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 211 DTKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANV 262
Query: 311 KAVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 263 NKSLITHISNRYNIDEV 279
>gi|377576560|ref|ZP_09805544.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
gi|377542592|dbj|GAB50709.1| ribonuclease BN [Escherichia hermannii NBRC 105704]
Length = 304
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + N P T++ P I++ +E ++ S
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMAGNENPLTVYGPAGIRQFIEMALQLSGSW--TGFP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L++V + GE + + V + H + GY I L +LK + I G
Sbjct: 115 LEIVEITAGEVF-CDEEFRVTAYPLTHPVECYGYRIEQHDRPGALDASRLKAEGI-TPGP 172
Query: 229 QIEKLKKSGVEITD--------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
++LK+ + D L P +A GDT TS + D +
Sbjct: 173 LFQQLKRGESVMLDDGRMINGQDYLGPARKGKTLAIFGDTGPTSAALTLASGVD-----V 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++ E T L+ M+ E A GH+ + E A+ +++THFSSRY
Sbjct: 228 MVHETT-LEAAMA-EKANSRGHSTTVQAAEVARAAGVGRLVITHFSSRY 274
>gi|445448066|ref|ZP_21443871.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
gi|444758249|gb|ELW82750.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-92]
Length = 324
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 32/240 (13%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL--- 225
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q +
Sbjct: 111 LPYSLQFIDVNEATQPQQIIDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGV 170
Query: 226 -KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-A 271
KG LK+ VE IL + GD +L ADA + A
Sbjct: 171 PKGDMWGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDA 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
++LI EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 227 QLLIHEATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKAGQQAI 285
>gi|448582762|ref|ZP_21646266.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
gi|445732410|gb|ELZ83993.1| ribonuclease Z [Haloferax gibbonsii ATCC 33959]
Length = 317
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THISARY 273
>gi|337284253|ref|YP_004623727.1| ribonuclease Z [Pyrococcus yayanosii CH1]
gi|334900187|gb|AEH24455.1| ribonuclease Z [Pyrococcus yayanosii CH1]
Length = 299
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP I+ P E V+ L RS G + D
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWNRTKPLHIYGPEGSAEFVKNLL---RS-GYFKPAFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL---- 233
+V ++GE + + F+ H IP+ GYV K + + H ++I KL
Sbjct: 113 VVIHEIGEVRLRFGEYEIWSFEVEHGIPALGYVF-----KERDRRGHFDLEKIRKLGLKP 167
Query: 234 --------KKSGVEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADALRAK 272
++ VE++ + + E + ++GDT L R AD
Sbjct: 168 GPWMKVLEERGEVEVSGMRIRLEDVTGPKRRGIKIVYSGDTEPCERLKLFARRAD----- 222
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+LI EAT++ + EH + HT + E A+ + + + L H + RY
Sbjct: 223 LLIHEATYIRE----EHRRDSYHTTVEEACAIAQEAKARLLALFHRAPRY 268
>gi|359393919|ref|ZP_09186972.1| Ribonuclease Z [Halomonas boliviensis LC1]
gi|357971166|gb|EHJ93611.1| Ribonuclease Z [Halomonas boliviensis LC1]
Length = 320
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 45/243 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P IK +E E + + L+
Sbjct: 58 ILITHVHGDHCYGLPGILASAGMGGRKAPLTIVAPAGIKAWLEATCEATQLC--LPFTLE 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ D + E + I V F+ H PS Y +K+ IEKL + G
Sbjct: 116 FIDSDELPSVEFES-IAVTTFRLSHRAPS--YAYGFTERKVDADL------NIEKLTQKG 166
Query: 238 VE----ITDIILSPEVAFTGDT--TSEFML---NPRN-------------ADALR-AKIL 274
+ + ++ F G+ + +F++ PR DA A++L
Sbjct: 167 IPRGPLWGQLKQGFDIEFAGEQLKSQDFLIFKNKPRKIMIAGDNDQPDLLMDACTGAQVL 226
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IED 326
+ EAT+ +EM+ E A GH++ + A+ ++ ++LTHFS RY IED
Sbjct: 227 VHEATY-TEEMA-EKAGDVGHSYGKLVAAFAESVQLPNLVLTHFSPRYQLNSNATPSIED 284
Query: 327 IRQ 329
IR+
Sbjct: 285 IRK 287
>gi|256847026|ref|ZP_05552472.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
gi|256715690|gb|EEU30665.1| ribonuclease Z [Lactobacillus coleohominis 101-4-CHN]
Length = 313
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IKE V+ + S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGNEPLTIYGPVGIKEFVQTTLRVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------Q 221
+ +++ + ++ +D V K H I GY + L KLKK
Sbjct: 115 IKFVEITDDGQLFSDQTFTVYAKKLDHKIDCFGYRVVEHDHPGELQVDKLKKLGIPSGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADAL--RAKIL 274
Y LK GK+++ + + D I SP+ VA GDT +NA AL A +L
Sbjct: 175 YGQLKQGKEVQLNDGTILNGQDFIGSPQRGRIVAILGDTRKT-----KNAIALAKDADVL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ E+TF E + H H + + I + K +LL H S+RY
Sbjct: 230 VHESTFGKGESKLAHNYYHSTSAQAAQIAKQAHV--KMLLLNHISARY 275
>gi|433463317|ref|ZP_20420874.1| ribonuclease Z [Halobacillus sp. BAB-2008]
gi|432187616|gb|ELK44884.1| ribonuclease Z [Halobacillus sp. BAB-2008]
Length = 308
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 30/232 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P T++ P +KE ++ + + S ++ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGESPVTVYGPAGLKEYID--WSLRLSGTHLRYPLR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + G +E + +V K H + S GY++ L +LK+ Y
Sbjct: 117 VVEVKEGMLFE-DDQFIVEAVKLQHGLESYGYLLKEKDRLGELQPHRLKELGIQPGPIYQ 175
Query: 224 HLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALR-AKILITE 277
+K ++ +L+ V +L P ++A GDT P AD L+ +L+ E
Sbjct: 176 TIKEQETTRLEDGRVIHRSDVLGPAEKGRKLAILGDTR----YLPSLADKLQLVDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
ATF DE + A + H+ + + A ++L H SSRY + + Q
Sbjct: 232 ATFAGDEEQM--AYDYYHSTVKQAASLADAAGAGELILNHVSSRYQGKAVEQ 281
>gi|387888598|ref|YP_006318896.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|414592667|ref|ZP_11442316.1| ribonuclease BN [Escherichia blattae NBRC 105725]
gi|386923431|gb|AFJ46385.1| ribonuclease Z [Escherichia blattae DSM 4481]
gi|403196148|dbj|GAB79968.1| ribonuclease BN [Escherichia blattae NBRC 105725]
Length = 304
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 38/234 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ PP ++E V+ + S + LD
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGGSGPLTLYGPPGLREYVQLSLTMSGSW--TDYPLD 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY----------------------LLR 215
+V + G ++ + VR +H + GY + L +
Sbjct: 117 IVEVSEGVIFD-DGEFEVRCVALNHPVVCFGYRVSAHDKPGALDAAALSASGVPPGPLFQ 175
Query: 216 KKLKKQYIHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKIL 274
+ + + + L+ G+ I+ + G + VA GDT L+ A A +L
Sbjct: 176 RLKRGETVQLEDGRWIDGRQYIGQPVK----GKSVAIFGDTAP---LDSARLLAAEADML 228
Query: 275 ITEATFLDDEMSI-EHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+ EAT E S+ + A GH + A+ K +++THFSSRY D
Sbjct: 229 VHEATL---EASLAQKANSRGHATTVQAATLAREAGVKTLVITHFSSRYRRADF 279
>gi|417643199|ref|ZP_12293259.1| ribonuclease Z [Staphylococcus warneri VCU121]
gi|445059596|ref|YP_007385000.1| ribonuclease Z [Staphylococcus warneri SG1]
gi|330685978|gb|EGG97601.1| ribonuclease Z [Staphylococcus epidermidis VCU121]
gi|443425653|gb|AGC90556.1| ribonuclease Z [Staphylococcus warneri SG1]
Length = 306
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 114/282 (40%), Gaps = 47/282 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I +K E +L LN + +++ E+ N +V+ +H I S GY I
Sbjct: 96 GI----QKYIETTLTLSESHLNYPITYIEIDESLNYHHNGFIVQAEMLNHGIKSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE------------------KLKKSGVEITDIILSPEVAFTGD 254
LK +E K+ +S + P VA GD
Sbjct: 152 TPTTPGTIDVDALKAIGLEPGPKYQEVKTNNTFEFNGKVYQSDEFKGEAKSGPVVAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E ++ A A I++ EAT+++ E ++ A + H+H+ ++ + K
Sbjct: 212 TKPCPNEHII------ANEADIMVHEATYIEGEKTL--ANSYHHSHIDDVFNLIRQANVK 263
Query: 312 AVLLTHFSSRY---HIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
L+TH S+RY IE+I Q + L V + FK
Sbjct: 264 QSLITHMSNRYTKEEIENIDQELNALADTPDFTFVTDFDSFK 305
>gi|410720670|ref|ZP_11360023.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
gi|410600381|gb|EKQ54909.1| ribonuclease Z [Methanobacterium sp. Maddingley MBC34]
Length = 303
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 39/255 (15%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD G R + + + +FITH H DH GLP + S K I+ P
Sbjct: 33 FDCGEGTQRQMARIKLSPMKVDHIFITHLHGDHFLGLPGMIQSMAFRGRKESLHIYGPEG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYL 213
+ + VE + ++LG L+ + +V E ++ N+ ++ THH I + Y +
Sbjct: 93 MIKTVENI----KNLGYYALSFPIHTYEVMEGVVLQTNEYLIECCPTHHSILNLAYSVEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
R K L+++ I L G KL+K VE+ ++ PE + ++GDT
Sbjct: 149 KRSPKFLREKAIQLGLKPGPDFGKLQKGIPVELEGTLIKPEQVLGAKRKGRKIVYSGDTK 208
Query: 257 SEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
P A+ A +LI E+T+ + S A ++GH+ + AK ++L
Sbjct: 209 P----CPEMVQFAIHADVLIHESTYESAQES--KALENGHSTTTHAAMIAKEAEVSELIL 262
Query: 316 THFSSRYHIED-IRQ 329
TH S+RY D +RQ
Sbjct: 263 THISTRYRDSDTLRQ 277
>gi|444305701|ref|ZP_21141480.1| ribonuclease Z [Arthrobacter sp. SJCon]
gi|443482031|gb|ELT44947.1| ribonuclease Z [Arthrobacter sp. SJCon]
Length = 320
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ +TH H DH GLP ++ L ++ P P+ EDV + S G +DL
Sbjct: 62 ICLTHVHGDHCYGLPGVLSRLALDGVRHPVHLHYPAAGEDVVRALVSISSPG-----IDL 116
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIEK 232
G+ + + + VRP K H I + GY + LL +L I G + +
Sbjct: 117 RLHPHGKAGIIADGLEVRPLK--HRIDTFGYRLVEPDGRTLLPDRLAAAGI--AGPDVGR 172
Query: 233 LKK----SGVEITDIIL---SPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM 285
L++ +GV + + + AF DT + AD A +L+ E+TF DD+
Sbjct: 173 LQREGTLNGVNLEAVSIHRPGQRFAFVMDT-APCAGAEELADG--ADLLVAESTFSDDDA 229
Query: 286 SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ AQQ+ H + E A +A++LTHFSSRY
Sbjct: 230 GL--AQQYRHLTAGQAGELASHAGARALVLTHFSSRY 264
>gi|27468105|ref|NP_764742.1| hypothetical protein SE1187 [Staphylococcus epidermidis ATCC 12228]
gi|251810920|ref|ZP_04825393.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|282876071|ref|ZP_06284938.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|417656057|ref|ZP_12305748.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|417913663|ref|ZP_12557326.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|418606691|ref|ZP_13169961.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|418609699|ref|ZP_13172835.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|418664573|ref|ZP_13226041.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|421607003|ref|ZP_16048253.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
gi|41017554|sp|Q8CSG7.1|RNZ_STAES RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|27315651|gb|AAO04786.1|AE016748_20 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805600|gb|EES58257.1| ribonuclease Z [Staphylococcus epidermidis BCM-HMP0060]
gi|281295096|gb|EFA87623.1| ribonuclease Z [Staphylococcus epidermidis SK135]
gi|329737307|gb|EGG73561.1| ribonuclease Z [Staphylococcus epidermidis VCU028]
gi|341654685|gb|EGS78423.1| ribonuclease Z [Staphylococcus epidermidis VCU109]
gi|374406638|gb|EHQ77530.1| ribonuclease Z [Staphylococcus epidermidis VCU065]
gi|374407467|gb|EHQ78329.1| ribonuclease Z [Staphylococcus epidermidis VCU057]
gi|374410383|gb|EHQ81141.1| ribonuclease Z [Staphylococcus epidermidis VCU081]
gi|406657296|gb|EKC83685.1| ribonuclease Z [Staphylococcus epidermidis AU12-03]
Length = 306
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE--------KLKKSGVEITDIILS-----------PEVAFTG 253
L+G +E KL+++ E +I + P ++ G
Sbjct: 152 APIMPGTINVEALRGIGLEPGPKYQEVKLQET-FEYKGLIYNSDDFKGKAKPGPIISIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 211 DTKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANV 262
Query: 311 KAVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 263 NKSLITHISNRYNIDEV 279
>gi|56756026|gb|AAW26191.1| unknown [Schistosoma japonicum]
Length = 136
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 267 DALRAKILITEATFLDD-EMSIEHAQQHGHTHLSEIIENAKWIRN-KAVLLTHFSSRYHI 324
D L ++LI EATFLD+ + IE A+ GHTHL EI +NA +++ + L HFS RY
Sbjct: 45 DLLSTQLLIMEATFLDNPDRRIESARNRGHTHLDEIRQNASLLKSVDYIYLIHFSDRYSY 104
Query: 325 EDIRQAVLK-LQSKVSAKVVP 344
DI + K + + ++VP
Sbjct: 105 NDIIRLCYKDMPDWLVNRIVP 125
>gi|154686646|ref|YP_001421807.1| ribonuclease Z [Bacillus amyloliquefaciens FZB42]
gi|166991093|sp|A7Z6F0.1|RNZ_BACA2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|154352497|gb|ABS74576.1| Rnz [Bacillus amyloliquefaciens FZB42]
Length = 308
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLN--PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT + + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRASERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|386714729|ref|YP_006181052.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
gi|384074285|emb|CCG45778.1| ribonuclease Z [Halobacillus halophilus DSM 2266]
Length = 308
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 30/232 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + P T++ P +KE ++ +I L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGETPVTVYGPRGLKEYIDITLQI----SGTHLRYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
L +V E +D VV H + S GY++ L KLK+ Y
Sbjct: 115 LYVEEVEEGILFEDDQFVVEAVSLQHGLESYGYILTEKDKIGELKPSKLKELGLEPGPIY 174
Query: 223 IHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+K + +L + +L P +++ GDT L + D + +L+ E
Sbjct: 175 QLIKSQSQTRLDNGKIIYRKDVLGPPKKGRKISILGDTRYIPDLKYKVKD---SDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
ATF DE + A + H+ + + AK + ++L H SSRY ++Q
Sbjct: 232 ATFASDENQM--AYDYFHSTVQQAATLAKEANVRELILNHISSRYQGSSLKQ 281
>gi|239636830|ref|ZP_04677829.1| ribonuclease Z [Staphylococcus warneri L37603]
gi|239597504|gb|EEQ80002.1| ribonuclease Z [Staphylococcus warneri L37603]
Length = 306
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 44/265 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
I +K E +L LN + +++ E+ +D V+ +H I S GY I
Sbjct: 96 GI----QKYIETTLTLSESHLNYPITYIEIDESLNYHHDGFTVQAEMLNHGIISYGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE------------------KLKKSGVEITDIILSPEVAFTGD 254
LK +E K+ +S + P VA GD
Sbjct: 152 TPTTPGTIDVDALKAIGLEPGPKYQEVKTNDTFEFNGKIYQSDEFKGEAKSGPVVAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E ++ A A I++ EAT+++ E ++ A + H+H+ ++ + + K
Sbjct: 212 TKPCPNEHII------ANDADIMVHEATYIEGEKTL--ANSYHHSHIDDVFDLIRQSNVK 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQS 336
L+TH S+RY E+I +L++
Sbjct: 264 HSLITHMSNRYTKEEIENIYQELKA 288
>gi|116618569|ref|YP_818940.1| beta-lactamase superfamily hydrolase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122271231|sp|Q03W55.1|RNZ_LEUMM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116097416|gb|ABJ62567.1| RNAse Z [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Length = 318
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 34/248 (13%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KLK+ I G +LK V + D + F G F
Sbjct: 152 IEKDHPGELLVDKLKQGNIP-SGPVYGQLKAGKTVTLPDGRIVNGHDFIGKAQKGRIVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+L+ R D A A +L+ E+T+ E + A+ H H+ + A+ ++
Sbjct: 211 ILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAHVNKLV 270
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 271 LTHLSARY 278
>gi|448560538|ref|ZP_21633986.1| ribonuclease Z [Haloferax prahovense DSM 18310]
gi|445722188|gb|ELZ73851.1| ribonuclease Z [Haloferax prahovense DSM 18310]
Length = 315
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +EKL +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKRHLEKL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 264
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 265 THISARY 271
>gi|420165501|ref|ZP_14672192.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
gi|394235302|gb|EJD80874.1| ribonuclease Z [Staphylococcus epidermidis NIHLM088]
Length = 306
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 46/257 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKGKQIE--------KLKKSGVEITDIILS-----------PEVAFTG 253
L+G +E KL+++ E +I + P ++ G
Sbjct: 152 APITPGTINVEALRGIGLEPGPKYQEVKLQET-FEYKGLIYNSDDFKGKAKPGPIISIFG 210
Query: 254 DTT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 211 DTKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANV 262
Query: 311 KAVLLTHFSSRYHIEDI 327
L+TH S+RY+++++
Sbjct: 263 NKSLITHISNRYNVDEV 279
>gi|448611228|ref|ZP_21661862.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
gi|445743660|gb|ELZ95141.1| ribonuclease Z [Haloferax mucosum ATCC BAA-1512]
Length = 311
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 115/280 (41%), Gaps = 52/280 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + + + PP
Sbjct: 35 FDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDALAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
K+ +E L +H ++ + + G +D VR F+T H S GY +
Sbjct: 94 SKQHLETL--VHAGGYQPGFHVSVHEVRPGTVAYRDDDYEVRAFETEHRTSSIGYALVED 151
Query: 213 -----LLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
R+K + + + G+ +E + VE ++ P +V +TGDT
Sbjct: 152 DRPGRFDREKAESLGVPVGPAFGRLHAGEDVELEDGTVVESEQVVGDPRSGRKVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E + A+Q H+ E A+ + L
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--DRAKQTAHSTAREAARVARDADVRRFAL 266
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS 355
TH S+RY +A PL E + VYT
Sbjct: 267 THISARY----------------AANPDPLLEQAREVYTG 290
>gi|389860396|ref|YP_006362635.1| ribonuclease Z [Thermogladius cellulolyticus 1633]
gi|388525299|gb|AFK50497.1| ribonuclease Z [Thermogladius cellulolyticus 1633]
Length = 250
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 84/211 (39%), Gaps = 52/211 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--IHRSLGNVELNL 176
VFITHGH DH GL V S L + V P E V +L + L V +
Sbjct: 57 VFITHGHGDHYLGLFGLVQSMNLLGRESELNVVAP---EQVVQLISGVLESMLEKVGFEV 113
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
++V GE Y+ ND+ V P+ H + + GY++ + K
Sbjct: 114 NVVVGRTGEVYK-ENDLEVTPYPVCHTVEAHGYLVRVGDKT------------------- 153
Query: 237 GVEITDIILSPEVAFTGDT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQ 291
V++TGDT EF N AKILI EATF + E A
Sbjct: 154 ------------VSYTGDTRPCPSIVEFSKN--------AKILIHEATFASEYS--EEAL 191
Query: 292 QHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ GH+ + A ++LTH SSRY
Sbjct: 192 KQGHSTARDAALAASEAGVGLLVLTHLSSRY 222
>gi|299537849|ref|ZP_07051138.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
gi|298726828|gb|EFI67414.1| ribonuclease Z [Lysinibacillus fusiformis ZC1]
Length = 310
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ + ++ ++ L
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSKT--HLTYPLR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-------KKQYIHL-KGKQ 229
V + G +E + + + HV+P GY I +K L K Q + + KG
Sbjct: 117 FVEVQEGIIFEDAH-FTIYAKELRHVVPCYGYRIE--QKDLPGELLIDKAQALGVPKGPL 173
Query: 230 IEKLKKSG---VEITDIILSPEV---AFTGDTTSEFMLNPRNADALR----AKILITEAT 279
+ +LK +E D++ + +V A G T S +A++ A I++ EAT
Sbjct: 174 LGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHEAT 233
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
F D + + A +GH E + A+ +LL H S+R+ D+ Q + + Q
Sbjct: 234 F--DGTTTDLAASYGHATNVEAAKVAQQAGAHYLLLNHLSARFLPYDLPQFLAEAQG 288
>gi|310831449|ref|YP_003970092.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386633|gb|ADO67493.1| putative metal-dependent hydrolase [Cafeteria roenbergensis virus
BV-PW1]
Length = 265
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 14/231 (6%)
Query: 93 TCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVP 152
T + IPELK D G I + ITHGH DHI + + + N K I
Sbjct: 20 TGIFIPELKLQLDAGYYFGSDIDN--ILITHGHADHIKDITSIIHN----NTKKVNIICA 73
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+K +E + L ++ +N + + ++N I + F H + Y I
Sbjct: 74 KYLKPYLENYLHSYFQLNSLNMNNHTLNKKITWNNSIKN-IKIEMFPVKHSVKCVAYGII 132
Query: 213 LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT-SEFMLNPRNADALRA 271
+ KLK +I K++ ++KK IT+ I + E+ F D S L P +
Sbjct: 133 TITNKLKTIFIGKSIKELIEIKKHNT-ITESIDNKEILFATDLDHSSLKLLPFD----EY 187
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
K +I E TF +E +E A+ H H +I K +K L+ H S RY
Sbjct: 188 KNIIIECTFYSEEHLVE-ARNRYHLHWVDIEPIIKKYVHKNFLIIHPSPRY 237
>gi|290769886|gb|ADD61657.1| putative protein [uncultured organism]
Length = 322
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 17/214 (7%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ V +TH H DHI GLP + + N P TI+ PP + + + L
Sbjct: 81 DAVLLTHYHGDHILGLPGLLQTLASLNRTAPLTIYGPPGQESIAAAIMALAGPLPYP--- 137
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYIHLKGKQ 229
VA + E + V PF H +P GY ++L R + K I L+ +
Sbjct: 138 ---VAWKIAEGTCKEAGLTVTPFPLKHRVPCCGYRLHLPRAGRFDAARAKAAGIPLEYWR 194
Query: 230 IEKLKKS--GVEITDIILSPEVAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDEMS 286
+ + +S G D++ P T ++ P +A R A +L ++T+ DD
Sbjct: 195 VLQAGQSIGGFAPGDVLGPPRRGLTVVYATDTRPCPAVLEAARGADLLCMDSTYADD-TD 253
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
+ A+ +GH E A + + + LTH+S+
Sbjct: 254 LPKAKLYGHATCRETGALAAEAKVRRLWLTHYSA 287
>gi|227830151|ref|YP_002831930.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
gi|259494142|sp|C3MPH2.1|RNZ_SULIL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227456598|gb|ACP35285.1| ribonuclease Z [Sulfolobus islandicus L.S.2.15]
Length = 291
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 43/243 (17%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + AD +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGAD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
++ A +GH+++++ + A K + LTH S RY ED+ + + KV+ +
Sbjct: 226 NE----PSAFTYGHSNVADAAKVALEASVKLLALTHISPRY--EDVTEHL-----KVARR 274
Query: 342 VVP 344
+ P
Sbjct: 275 IFP 277
>gi|70726413|ref|YP_253327.1| hypothetical protein SH1412 [Staphylococcus haemolyticus JCSC1435]
gi|123660271|sp|Q4L6K4.1|RNZ_STAHJ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|68447137|dbj|BAE04721.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 306
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 44/270 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEDKPLTVIGPR 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-- 211
+++ +E + S ++ + + +D TY + + +H IPS GY I
Sbjct: 96 GLQQFIETTLRLSES--HLNYPITYIEIDNHFTYHHKG-FSISAHLLNHGIPSYGYRIES 152
Query: 212 ----------YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----VAFTGDT 255
L L + + K + + G V +D P ++ GDT
Sbjct: 153 PTTPGTIDVEALKSIGLYPGPKYQEVKSYDNFEHEGQVYNSDDFKGPAKPGPIISIFGDT 212
Query: 256 ---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
SE + A + ++I EAT+++ E ++ A + H+H+ ++ E K K
Sbjct: 213 KPCQSELSI------AKDSDVMIHEATYIEGEKTL--ANNYHHSHIEDVFELIKQANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKV 342
L+TH S+RY+ E+I+ ++K Q K V
Sbjct: 265 CLITHLSNRYNHENIQ--LIKQQLKTHEDV 292
>gi|212223398|ref|YP_002306634.1| ribonuclease Z [Thermococcus onnurineus NA1]
gi|254808680|sp|B6YT50.1|RNZ_THEON RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|212008355|gb|ACJ15737.1| ribonuclease Z [Thermococcus onnurineus NA1]
Length = 311
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 42/252 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD+G R + + +FITH H DH GL + + L+N KP I+ P
Sbjct: 34 FDVGEGTMRQMSTAKLSPMKVEKIFITHFHGDHYLGLAALIQTMNLWNREKPLHIYGPKY 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
++ + G D+ ++GE D + FK H IP+ GYV
Sbjct: 94 TFRFIQNFL----NSGFFRPGFDIHVHEIGEVRLKFGDYEIWSFKVEHGIPALGYVFKEK 149
Query: 215 RKKLK------KQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTGDT- 255
K+ K +Y +G + KL+K G +E I+ E V +TGDT
Sbjct: 150 DKRGKFLPEKLAEYGLSEGPILGKLEKQGQIEWNGRIIRLEDVTGPRRKGVKVVYTGDTE 209
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
L NAD +LI EAT+L E + + HT + E E AK + K +
Sbjct: 210 PCERTRLFAENAD-----LLIHEATYLRPE---DRGDSY-HTTVGEACEIAKKAKVKLLA 260
Query: 315 LTHFSSRYHIED 326
L H + RY ++
Sbjct: 261 LFHRAFRYTYDE 272
>gi|448497735|ref|ZP_21610549.1| ribonuclease Z [Halorubrum coriense DSM 10284]
gi|445699476|gb|ELZ51501.1| ribonuclease Z [Halorubrum coriense DSM 10284]
Length = 310
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P TI PP
Sbjct: 35 FDCGEGTQREMMRSGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ L +H + + + ++ G ++ VR F+T H SQGYV+
Sbjct: 95 GGQLHDL--VHAVGHDPAFPVRVEPVEPGAVAFETDEYEVRAFETEHRTVSQGYVLEEAD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R + ++ + + +G+ +E + VE ++ P ++A+T DT
Sbjct: 153 RPGRFDRPRAEELGVPVGPKFGRLHEGETVEAEDGTVVEPEQVVGPPRPGRKLAYTADT- 211
Query: 257 SEFMLNPRNA---DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVDAAADADLLIHDATFADD--MADRARDTAHSTGREAGSIADRANAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|323488957|ref|ZP_08094194.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
gi|323397349|gb|EGA90158.1| ribonuclease Z [Planococcus donghaensis MPA1U2]
Length = 314
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 34/242 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR +P I+ P IKE ++ + R+ L
Sbjct: 59 IFITHMHGDHIFGLPGLLGSRSFQAGEEPLEIYGPVGIKEYIQMTLTLSRT----HLTYP 114
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHL---KGKQI 230
+V ++ E ++++ V HVIPS G+ I L K L + + L KG +
Sbjct: 115 IVYHELSEGMIFEDELMTVETRLLDHVIPSYGFRITQKPLPPKLLINKALSLGVPKGPLL 174
Query: 231 EKLKKS-GVEITD-------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KLK +E+ D + PE + GDT + R AD +L+
Sbjct: 175 AKLKTGQDIELADGQWVRSGDVTEPEQPGFVMTILGDTRFCKTAVELGRGAD-----VLV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF D + + A ++GH + + E A+ +++ H S+R+ ED + + +++
Sbjct: 230 HEATF--DATAKKMAAEYGHATVYDAAETARLAGANTLIMNHISARFLPEDEKFLLKQMK 287
Query: 336 SK 337
K
Sbjct: 288 EK 289
>gi|374723933|gb|EHR76013.1| ribonuclease Z / metallo-beta-lactamase superfamily protein
[uncultured marine group II euryarchaeote]
Length = 379
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 71/275 (25%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL--------- 162
RA + + V +THGHLDH GL ++ + L + P + + P+ E +E L
Sbjct: 60 RAAKIDAVCLTHGHLDHTWGLLPWLQTMALDRREKPLLIIGPTSSETLEALSAGLPVPPT 119
Query: 163 ------------------------FEIHRSLGN------VELNLDL---VALDVGETYEM 189
+++ LG+ +ELN + +LD E
Sbjct: 120 APPAELARQMQSWHSLGATSEGLGYKVRWILGDTVADKWIELNPETGGSSSLDAMPQPEG 179
Query: 190 RNDIVVRPFKTHHVIPSQGYVIYLLRK---------KLKKQYIHLKGKQIEKLKKSGVEI 240
+ + P T H +PS ++ K +LK + L +Q +L + G ++
Sbjct: 180 WKQVKIVPLATTHTVPSCAWMFESKEKSGXXXXXXNRLKAAELRLSKEQQTELGQ-GRDV 238
Query: 241 T----DIILSP----------EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMS 286
T +++L+ +GDT + P D +L+ EATFL+D +
Sbjct: 239 TLDNGEVLLASSFRSESIRPHRFVISGDTAEQA---PGLIDLEGVDVLVHEATFLED--T 293
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
+HA +H H+ + + A + ++LTHFS+R
Sbjct: 294 KDHATEHLHSTATGAVRTALACGARHLVLTHFSAR 328
>gi|399022537|ref|ZP_10724611.1| ribonuclease Z [Chryseobacterium sp. CF314]
gi|398084597|gb|EJL75275.1| ribonuclease Z [Chryseobacterium sp. CF314]
Length = 304
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLF--- 163
+ R + N +FI+H H DH GLP +AS L + P ++ P IK +E +F
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHVYGPKGIKSMLETIFTIT 106
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
E HR V LD D E N + V H I G YL R+K K +++
Sbjct: 107 ETHRGFEVVYHELD---KDYSEKIYEDNRVEVFTIPLDHRIYCNG---YLFREKPKDRHL 160
Query: 224 HLKGKQIEKLKKSGVEITD---------------IILSPE---VAFTGDTTSEFMLNPRN 265
++K E K S +E+ D IL E VA + F + R
Sbjct: 161 NMK----EIAKYSEIEVCDYHNLKAGKDFVLNDGYILKNEILTVAPAPSVSYAFCSDTRY 216
Query: 266 ADAL-----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
+++ +L E+TFL D E A GH+ E AK ++L HFS+
Sbjct: 217 FESVIPIIKNVTVLYHESTFLHDLK--EMADYTGHSTALEAATIAKKAEVGKLILGHFSN 274
Query: 321 RY 322
RY
Sbjct: 275 RY 276
>gi|350533410|ref|ZP_08912351.1| ribonuclease Z [Vibrio rotiferianus DAT722]
Length = 325
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 53/247 (21%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P + +E+ FE ++ + L +L
Sbjct: 58 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---KGIEQWFEATQAFTKLYLPFEL 114
Query: 179 VALDVGETYEMRNDIVVRPFKT-----HHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKL 233
++V E + I + F H +PS + + + Y I+KL
Sbjct: 115 HFIEV----EQFDSIEIGQFTITATILSHRVPS---FAFCFEESTIRMY-----PDIDKL 162
Query: 234 KKSGVE----ITDIILSPEVAFTGDTT-----SEFMLNPRNA------------DAL--R 270
++S + +++ +V + G T ++F PR A D L
Sbjct: 163 EQSNIPRGPIWGELVRGNDVEYQGQTLMSKAFTKFAHPPRKAIICGDNDTPEKLDGLIEG 222
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH------- 323
A +L+ E+T+ E E A + GH + S++ A+ + ++LTHFS RY
Sbjct: 223 AHLLVHESTY--SEAMKERAGEVGHAYSSQVANYAQAKQVSNLILTHFSPRYQFSSEAEV 280
Query: 324 -IEDIRQ 329
IE IR+
Sbjct: 281 SIEQIRK 287
>gi|339448222|ref|ZP_08651778.1| ribonuclease Z [Lactobacillus fructivorans KCTC 3543]
Length = 315
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 29/227 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP ++SR P TI+ P IK V+ ++ ++ +
Sbjct: 57 NKIFITHLHGDHIYGLPGLLSSRSFQGGDDPVTIYGPHGIKNYVQTSLQVTQT--KLGYR 114
Query: 176 LDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ------ 221
+ V L G+ +E R V K H + S G+ I LL KL++
Sbjct: 115 IKYVELGQPGKIFEGRK-FTVYAEKLDHQVQSWGFRIVEHDHPGELLVNKLRENNIPAGP 173
Query: 222 -YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
Y LK GK I+ + D I + + GDT +N D A +L+
Sbjct: 174 LYGQLKQGKTIQLNDGRIINGNDYIGKAQKGRIITILGDTRKVDTINELAQD---ADVLV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF E + H + H+ + AK K +LLTH S+RY
Sbjct: 231 HESTFGKGEAKLAH--NYYHSTNIQAANTAKEANVKRLLLTHISARY 275
>gi|419958267|ref|ZP_14474332.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
gi|388606950|gb|EIM36155.1| ribonuclease Z [Enterobacter cloacae subsp. cloacae GS1]
Length = 305
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPAGIQEFVETTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK--- 234
+V + G ++ D VR + +H + GY + + K ++ Q + +K
Sbjct: 118 VVEIGEGLVFD-DGDYQVRAYPLNHPVECYGYRV---EEHDKPGALNAAALQADGVKPGP 173
Query: 235 -----KSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALR----A 271
K G +T D + P+ +A GDT ALR
Sbjct: 174 LFQRLKHGETVTLEDGRVINGQDYLAPPQPGKKLAIFGDTAP-------CPSALRLAGGV 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ EAT L+ M E A GH+ + + A+ + +++TH SSRY D+R A
Sbjct: 227 DVMVHEAT-LEAAME-EKANSRGHSSTRQAAQLAREAGVRKLIVTHVSSRY---DVRGA 280
>gi|424735601|ref|ZP_18164064.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
gi|422950258|gb|EKU44627.1| ribonuclease Z [Lysinibacillus fusiformis ZB2]
Length = 311
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 26/237 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TIF P +++ +E+ + ++ ++ L
Sbjct: 60 IFITHLHGDHIFGLPGFLSSRSFQGGDEPLTIFGPSGLQQWIEQTLALSKT--HLTYPLR 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL-------KKQYIHL-KGKQ 229
V + G +E + + + HV+P GY I +K L K Q + + KG
Sbjct: 118 FVEVQEGIIFEDAH-FTIYAKELRHVVPCYGYRIE--QKDLPGELLIDKAQALGVPKGPL 174
Query: 230 IEKLKKSG---VEITDIILSPEV---AFTGDTTSEFMLNPRNADALR----AKILITEAT 279
+ +LK +E D++ + +V A G T S +A++ A I++ EAT
Sbjct: 175 LGQLKDGHDIVLENGDVVHAKDVVAPAKKGFTLSVLGDTKYCEEAIQLSMGADIIVHEAT 234
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
F D + + A +GH E + A+ +LL H S+R+ D+ Q + + Q
Sbjct: 235 F--DGTTTDLAASYGHATNVEAAKVAQQAGAHYLLLNHLSARFLPYDLPQFLAEAQG 289
>gi|418324923|ref|ZP_12936142.1| ribonuclease Z [Staphylococcus pettenkoferi VCU012]
gi|365223586|gb|EHM64870.1| ribonuclease Z [Staphylococcus pettenkoferi VCU012]
Length = 306
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 44/258 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLK--PPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR K P TI P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGKGKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-- 211
IK VE + S + L + +D +Y+ V H +I S GY I
Sbjct: 96 GIKAFVETALAL--SASKLNYPLTFIEIDNELSYQHHGFEVTAQILNHGII-SFGYRIEA 152
Query: 212 ----------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITD-------IILSPEVAFTGD 254
L R L+ + + K E + +G ++ D P VA GD
Sbjct: 153 PSTPGTIDVEALKRIGLEPGPKYQQVKSEETFEHAG-QLYDSKDFKGPAKRGPIVAIFGD 211
Query: 255 T---TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E L A +A +++ E T+L+ + ++ A + H+H++++ + + K
Sbjct: 212 TKPCANETTL------AHQADVMVHEGTYLEGDRTL--ANNYHHSHVADVFQLMANAQVK 263
Query: 312 AVLLTHFSSRYHIEDIRQ 329
L+TH S+RY+++D+ +
Sbjct: 264 HGLITHISNRYNLDDVTE 281
>gi|307133238|ref|YP_003885254.1| ribonuclease Z [Dickeya dadantii 3937]
gi|306530767|gb|ADN00698.1| Ribonuclease Z [Dickeya dadantii 3937]
Length = 308
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 115/271 (42%), Gaps = 42/271 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + +FITH H DH+ GLP + SR + ++ P T++ P
Sbjct: 40 FDCGEGTQHQILRTPVKPGKLEKIFITHLHGDHLFGLPGLLCSRSMAGIETPLTLYGPAG 99
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+K VE + S + L++V + G +E + V + H + GY I
Sbjct: 100 LKAFVEATLTLSGSW--LTYPLEVVEVAPGTVFE-DHQFRVTAHELSHTLYCVGYRIEER 156
Query: 213 -----LLRKKLKKQYIHLKGKQIEKLKKSGVEITDI-------------ILSPEVAFTGD 254
L +KL + + G ++LK+ D + +A GD
Sbjct: 157 PKPGPLDVRKLAVEGVK-PGAYFQQLKRGETVTLDDGRVLNGWDYVGPGLPGKSLAIFGD 215
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T T E + D +++ EAT L+ M+ E A + GH+ + A+ K
Sbjct: 216 TRPTPEALKLAAGVD-----VMVHEAT-LEGAMA-ERADERGHSTTLQTAATARDAGAKR 268
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
+++THFS+RY ED+ + + Q+ A V
Sbjct: 269 LIITHFSARYGREDLIRLCQECQTLFPATEV 299
>gi|403673429|ref|ZP_10935726.1| Ribonuclease Z [Acinetobacter sp. NCTC 10304]
Length = 324
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVTICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLL----ADACKD 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA
Sbjct: 226 AQLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 331 V 331
+
Sbjct: 285 I 285
>gi|377809591|ref|YP_005004812.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
gi|361056332|gb|AEV95136.1| ribonuclease Z [Pediococcus claussenii ATCC BAA-344]
Length = 309
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 43/243 (17%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R R + + +FITH H DHI GLP +++SR TI+ P IK+ V L +
Sbjct: 48 RTNLRPRKIDKIFITHLHGDHIFGLPGFLSSRSFQGGDGKLTIYGPRGIKDFV--LTSLK 105
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK 226
S + +D LD + +VR K H I S GY I ++ H
Sbjct: 106 ISDTRLGYKIDFHELDNDGEILNNDKFIVRAEKLDHRILSFGYRI--------EEKAHQG 157
Query: 227 GKQIEKLK-------------KSGVEIT----------DIILSPE----VAFTGDTTSEF 259
Q+EKLK K G +T D + P+ V GDT
Sbjct: 158 ELQVEKLKEMNIPSGPVYGRLKRGETVTLQDGRIINGKDFVGKPQSGRIVTILGDTRR-- 215
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
++ + A A +L+ E+TF +E + A+ + H+ + AK + K +LLTH S
Sbjct: 216 -IDSIESLAKDADVLVHESTFGKNEGKL--ARNYYHSTNMQAASVAKKVHVKELLLTHIS 272
Query: 320 SRY 322
+RY
Sbjct: 273 ARY 275
>gi|284044651|ref|YP_003394991.1| ribonuclease Z [Conexibacter woesei DSM 14684]
gi|283948872|gb|ADB51616.1| ribonuclease Z [Conexibacter woesei DSM 14684]
Length = 328
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 31/243 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DH GLP + + L KP TI PP +++ + + + G E+ L
Sbjct: 57 VFITHFHADHWLGLPGMLKTFDLRARDKPLTIHGPPGLRKLMNDMRYVWGGCG-YEITLS 115
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ D R++ V+ PF +H + GYVI +L +Q G
Sbjct: 116 ELPPDA---MVERDEYVIEPFLVNHRGTAYGYVITEDDRPGRFDAQLAEQLGVTPGPDFG 172
Query: 232 KLKK----SGVEITDII----LSPEVAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+L++ GV +I L ++ +GDT E + AD +L+ EATF
Sbjct: 173 RLQRGETIGGVRPEQVIGETRLGRKLVISGDTGPCEELIEIAHGAD-----VLVHEATFT 227
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
+E + A+Q H+ ++ + A + + L H S+RY +IR+ + ++ A
Sbjct: 228 QEEA--DRARQTQHSTAAQAAKAAVEAEVRLLALVHLSTRYGGREIRE---EARAVFPAT 282
Query: 342 VVP 344
VVP
Sbjct: 283 VVP 285
>gi|402299981|ref|ZP_10819535.1| ribonuclease Z [Bacillus alcalophilus ATCC 27647]
gi|401724844|gb|EJS98172.1| ribonuclease Z [Bacillus alcalophilus ATCC 27647]
Length = 305
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 31/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP + SR I+ PP +++ V + ++ + +
Sbjct: 59 IFISHLHGDHIFGLPGIIGSRSFQGATSELVIYGPPGLEDFVTQALKVSHTYLKYPIRFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK---------Q 221
V G ++ + + V + HV+PS Y + LL KLK Q
Sbjct: 119 EVT-KSGPLFD-EDGVKVEVLELDHVMPSFAYKLVEAEKPGELLIDKLKPFAVPPGPIYQ 176
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDTT-SEFMLNPRNADALRAKILIT 276
I KG+QI + + D + P +V GDT SE ++ A A +LI
Sbjct: 177 QIK-KGEQIRLEDGTILNGKDFVGEPKRGRKVVIAGDTRPSEKLVE----FAAGADLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
EATF D EHA Q GH+ + AK K +++TH SSRY
Sbjct: 232 EATFRSDLR--EHALQFGHSTIEATALLAKKADVKQLIMTHISSRY 275
>gi|153832098|ref|ZP_01984765.1| ribonuclease Z [Vibrio harveyi HY01]
gi|148871713|gb|EDL70554.1| ribonuclease Z [Vibrio harveyi HY01]
Length = 286
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 45/242 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P E +++ FE ++ + L +L
Sbjct: 58 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---EGIKQWFEATQAFTKLYLPFEL 114
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
++V + + + H +PS Y + + Y I+KL++S
Sbjct: 115 HFIEVEQFDSIEIGQFTITATALSHRVPS---FAYCFEESTIRMY-----PDIDKLEQSN 166
Query: 238 VE----ITDIILSPEVAFTGDTT-----SEFMLNPRNA------------DAL--RAKIL 274
+ +++ +V + G T ++ PR A D+L A +L
Sbjct: 167 IPRGPIWGELVRGNDVEYQGQTLMSKAFTKLAHPPRKAIICGDNDKPEKLDSLIEGAHLL 226
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IED 326
+ E+T+ E E A + GH + S++ A+ + ++LTHFS RY IE
Sbjct: 227 VHESTY--SEAMKERAGEVGHAYSSQVASYAQAKQAPNLILTHFSPRYQFSPEAEVSIEQ 284
Query: 327 IR 328
IR
Sbjct: 285 IR 286
>gi|255535073|ref|YP_003095444.1| ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
gi|255341269|gb|ACU07382.1| Ribonuclease Z [Flavobacteriaceae bacterium 3519-10]
Length = 305
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 29/227 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNL- 176
+FI+H H DH GLP +AS L + P I+ P IKE +E +F I + EL
Sbjct: 58 IFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIKEMLETIFRITETHKGFELVYH 117
Query: 177 DLVALDVGETYE-MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL----KGKQIE 231
+L + + +E R ++ P K H + G YL R+K K++++++ K +IE
Sbjct: 118 ELESKQSEKIFEDKRVEVFTIPLK--HRVYCNG---YLFREKPKERHLNMQEISKYPEIE 172
Query: 232 KLKKSGVEI-TDIILSPEVAFTGDTTS---------EFMLNPRNADAL-----RAKILIT 276
+++ D +L+ T + F + R +++ +L
Sbjct: 173 TCDYQNIKLGKDFVLNDGYTLKNATLTTDPSKSVSYAFCSDTRYIESIVPIIENVDVLYH 232
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
E+TFL D E A GHT E A+ ++L HFS+RYH
Sbjct: 233 ESTFLHDLK--EMADYTGHTTALEAARIARKANVGKLILGHFSNRYH 277
>gi|319651456|ref|ZP_08005584.1| ribonuclease Z [Bacillus sp. 2_A_57_CT2]
gi|317396771|gb|EFV77481.1| ribonuclease Z [Bacillus sp. 2_A_57_CT2]
Length = 312
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 107/256 (41%), Gaps = 32/256 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR T++ P +KE + E+ S+ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGDTEVTLYGPKGLKEYI----EVSLSVSGTYLKYP 114
Query: 178 LVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------Y 222
L ++ + T D V H IPS GY + LL KL + Y
Sbjct: 115 LKVAEISDGTILDEKDFKVEARLLEHGIPSYGYRVTEKDRPGTLLADKLAEAGIKPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
+K G+ IE S +E + + + + GDT + + A A +LI E
Sbjct: 175 KKIKNGENIELENGSILEAKNFLGPAQKGRIITVLGDTR---ICDAAIELAAHADLLIHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF E + H H T + + A+ + + L H SSRY +D Q V + Q+
Sbjct: 232 ATFSQGEEKLAHDYFHSTTRQAAKV--AREANARKLCLNHISSRYERQDWEQLVKESQTI 289
Query: 338 VSAKVVPLTEGFKSVY 353
V+ E FK ++
Sbjct: 290 FPNTVI--AEDFKEIH 303
>gi|394992227|ref|ZP_10385017.1| ribonuclease Z [Bacillus sp. 916]
gi|393806957|gb|EJD68286.1| ribonuclease Z [Bacillus sp. 916]
Length = 308
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEQGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKRLILTHISARYQGE 277
>gi|308174175|ref|YP_003920880.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|384160030|ref|YP_005542103.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|384164955|ref|YP_005546334.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|384169094|ref|YP_005550472.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
gi|307607039|emb|CBI43410.1| ribonuclease Z [Bacillus amyloliquefaciens DSM 7]
gi|328554118|gb|AEB24610.1| ribonuclease Z [Bacillus amyloliquefaciens TA208]
gi|328912510|gb|AEB64106.1| ribonuclease Z [Bacillus amyloliquefaciens LL3]
gi|341828373|gb|AEK89624.1| ribonuclease Z [Bacillus amyloliquefaciens XH7]
Length = 308
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + I+ P IK +E ++ + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELAIYGPKGIKAFIETSLKV--TATHLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E + +V H + + GY I L +LK+ I G
Sbjct: 117 IHEIEEGTVFE-DDQFIVTAASVIHGVEAFGYRIQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGEDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|365850467|ref|ZP_09390930.1| ribonuclease Z [Yokenella regensburgei ATCC 43003]
gi|364567133|gb|EHM44805.1| ribonuclease Z [Yokenella regensburgei ATCC 43003]
Length = 287
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 32/257 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P TI+ P +K VE ++ S + L
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTIYGPKGLKTFVETALQLSGSWTDYPLT 99
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
++ + G+ ++ V + +H + GY I K LK I
Sbjct: 100 IEEIG--PGKLFD-DGHFRVTAYPLNHPVECYGYRIEEHDKPGTLNAAALKADGISPGPL 156
Query: 232 -KLKKSGVEIT---------DIILSPE-----VAFTGDTT-SEFMLNPRNADALRAKILI 275
+ K G+ +T L P +A GDT E L A A +++
Sbjct: 157 FQQLKQGLTVTLEDGRMIDGSHYLGPATPGKTLAIFGDTAPCEGAL----ALARDVDLMV 212
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EAT L+D M+ E A GH+ + AK +++TH SSRY E R+ L +
Sbjct: 213 HEAT-LEDAMA-EKANSRGHSTARQAAVLAKEAGATKLVITHVSSRYDAEGCRR--LLEE 268
Query: 336 SKVSAKVVPLTEGFKSV 352
S+ L E FK +
Sbjct: 269 SRSCFANCELAEDFKVI 285
>gi|421674626|ref|ZP_16114555.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
gi|421691694|ref|ZP_16131353.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|404562303|gb|EKA67527.1| putative ribonuclease Z [Acinetobacter baumannii IS-116]
gi|410383926|gb|EKP36445.1| putative ribonuclease Z [Acinetobacter baumannii OIFC065]
Length = 324
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVTICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQEWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPKLL----ADACKD 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA
Sbjct: 226 AQLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 331 V 331
+
Sbjct: 285 I 285
>gi|393911353|gb|EFO27292.2| metallo-beta-lactamase superfamily protein [Loa loa]
Length = 901
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 99 ELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI--K 156
+L+ F C ++ N VFITHGH DH G+ V R +K + P +
Sbjct: 471 QLRTLFGDVVCEDLLLKLNAVFITHGHQDHYHGIFTIVQCRKKLFVKRGLTYKPLVVIGG 530
Query: 157 EDVEKLF-EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
V K+F +I RS GN ++ +V D+ + + P + + I ++
Sbjct: 531 NHVLKVFRDIDRSFGNYTRDMHIV--DISKILWTLSQEKGGPVEAADLTGQMPPEIVNVK 588
Query: 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILI 275
K I +K G TD+ + + F+GDT L DAL +L+
Sbjct: 589 SLGFKSIIAVKVNHART--AVGYIFTDLN-NRKFVFSGDTMPCEQLVNHGKDAL---VLV 642
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY--------HIEDI 327
E+TF DDE + HA H+ + + + A + K ++LTHFS++Y +IE
Sbjct: 643 HESTFADDEEA--HALYKKHSTMKQAFDVATRMGAKNLVLTHFSAKYPKVPPLPDYIEKA 700
Query: 328 RQAVLKLQS--------KVSAKVVPL 345
+ + + K+SAK++P+
Sbjct: 701 GNVTIAMDNMIVTPSDLKLSAKLIPV 726
>gi|303281240|ref|XP_003059912.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458567|gb|EEH55864.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 282
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 55/242 (22%)
Query: 119 VFITHGHLDHIGGLPMYVAS--------RGLYNLKPPTIFV--PPSIKEDVEKLFEIHRS 168
+FITH H DHI GLP + + R ++ P +++ PP I + V R+
Sbjct: 56 IFITHMHGDHIFGLPGLICALSGARAELRRVHGKDPTPLYITGPPGICDYVRAAITCSRT 115
Query: 169 LGNVELNLDLVALDVGETYEMRND-------IVVRPFKTHHVIPSQGYVI----YLLRKK 217
+ L L L+A RND IVVR H +P GYV+ R
Sbjct: 116 V----LGLPLIAPSA------RNDRNGNEGGIVVRAAPLRHPVPCFGYVVDEPDQPGRMD 165
Query: 218 LKKQ-YIHLKGKQIEKLKKSGVEIT---DIILSPE-----------VAFTGDTTSEFMLN 262
+++ + L + K K+G +T + + PE + GDT +
Sbjct: 166 VERATALGLPPGPLYKKLKNGEPVTTADGVTIRPEDVLGPTRPGRRLCLLGDTCDSVAIA 225
Query: 263 --PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSS 320
R AD +L+ E+TF + A GH+ + A+ IR + +LLTHFS+
Sbjct: 226 ELARGAD-----VLVHESTFA--AFKRDEALYKGHSTSAMAGAFARLIRARNLLLTHFSN 278
Query: 321 RY 322
RY
Sbjct: 279 RY 280
>gi|288932766|ref|YP_003436826.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
gi|288895014|gb|ADC66551.1| ribonuclease Z [Ferroglobus placidus DSM 10642]
Length = 302
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 53/260 (20%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVP 152
K FD G R + + +FITH H DH G+ + + L + KP +I+ P
Sbjct: 32 KILFDCGEGTQRQMMKAKTGFNIEAIFITHLHTDHFIGVFGLLETMSLNSREKPLSIYTP 91
Query: 153 PSIKEDVEKLFEIHRSLG--NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
S + + KLF R G N+ + +V L G+ N V FKT H++ S GY
Sbjct: 92 NS--KFLRKLF---REFGYHNLGFPVRVVGLRDGDFVRFEN-FKVLAFKTDHIVESLGYA 145
Query: 211 IYLLRKKLKKQYIHLKGKQI--------EKLKKS-GVEITDIILSPE-----------VA 250
+ + + ++ K +++ KL + +E + I++P+ V
Sbjct: 146 --FVEDERRGKFNVEKARELGIPPGPLYSKLARGEAIEFGEKIITPDMVLGEKRPGWKVV 203
Query: 251 FTGDTT--SEFMLNPRNADALRAKILITEATF---LDDEMSIEHAQQHGHTHLSEIIENA 305
+TGDT + + +NAD +LI +A F LDD A++ H+ + E A
Sbjct: 204 YTGDTAPVEKLVEIAKNAD-----LLIHDAAFTSELDD-----WAKETKHSTARDAAEIA 253
Query: 306 KWIRNKAVLLTHFSSRYHIE 325
K K ++LTH S+RY E
Sbjct: 254 KKANVKKLVLTHISARYSKE 273
>gi|146283279|ref|YP_001173432.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
gi|145571484|gb|ABP80590.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri A1501]
Length = 337
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P I+ V + +S + EL+
Sbjct: 60 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 119
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
V LD + MR + + H +P GY R + IE+L+
Sbjct: 120 AVETLDEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPR--------LDIERLEHD 167
Query: 237 GV----------EITDIILSPEVAFTGDTTSEFMLNPRN-------------ADALR-AK 272
GV DI V + D S F +PR A+A R A+
Sbjct: 168 GVPRGPLWGQLARGFDIEHEGRVLRSHDYLS-FSRSPRRIVVGGDNDRPDLLAEACRDAQ 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------I 324
+L+ EAT+ + ++ + GH+ + + A+ + ++LTHFS+RY I
Sbjct: 227 LLVHEATYT-EAVANDARNDFGHSTAATVARFAQAVGLPNLVLTHFSARYQKHVGRGHSI 285
Query: 325 EDIRQAVLKL 334
ED+R L
Sbjct: 286 EDLRAEAAAL 295
>gi|429505789|ref|YP_007186973.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429487379|gb|AFZ91303.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 308
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAASVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+KK G +T D + P+ VAF+GDT SE + RNAD +L
Sbjct: 175 QKIKK-GETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELARNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKRLILTHISARYQGE 277
>gi|420192253|ref|ZP_14698113.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
gi|394261464|gb|EJE06261.1| ribonuclease Z [Staphylococcus epidermidis NIHLM023]
Length = 306
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS-----------PEVAFTGD 254
+ L+ + K E + E +I + P ++ GD
Sbjct: 152 APITPGTINVDALRDIGLEPGPKYQEVKLQETFEYKGLIYNSDDFKGKAKSGPIISIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E+ L A + ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 212 TKPCENEYKL------ANNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVN 263
Query: 312 AVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 264 KSLITHISNRYNIDEV 279
>gi|390453631|ref|ZP_10239159.1| ribonuclease Z [Paenibacillus peoriae KCTC 3763]
Length = 309
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 117/272 (43%), Gaps = 44/272 (16%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
+I R P + + +FITH H DH+ GLP ++SR P T++ PP +K+ +E
Sbjct: 45 EILRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLKQYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKK 217
I +S N +L+ + G V H I S GY I L ++
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSFGYRIVEMDKPGKLNQE 161
Query: 218 LKKQYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPR 264
L +QY G KLK+ VE+ D++ SP+ + GDT P
Sbjct: 162 LLEQYGIKPGPIYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPN 217
Query: 265 NAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
A A +++ EATFL + + A ++ H+ + E AK ++LTHFSSRY
Sbjct: 218 TVVLAQDATVVVHEATFLHE--LADTAYEYHHSTALQAAEAAKAANAGQLILTHFSSRY- 274
Query: 324 IEDIRQAVLKLQSKVSAKVVPLTEGFKSVYTS 355
K ++ PL E KS++ S
Sbjct: 275 -------------KDQEQLEPLLEEAKSIFPS 293
>gi|418327933|ref|ZP_12939065.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|418614695|ref|ZP_13177657.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|418630602|ref|ZP_13193083.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|418633189|ref|ZP_13195606.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|420190119|ref|ZP_14696063.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|420204420|ref|ZP_14709978.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|420234665|ref|ZP_14739225.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
gi|365232492|gb|EHM73488.1| ribonuclease Z [Staphylococcus epidermidis 14.1.R1.SE]
gi|374819231|gb|EHR83359.1| ribonuclease Z [Staphylococcus epidermidis VCU118]
gi|374837792|gb|EHS01355.1| ribonuclease Z [Staphylococcus epidermidis VCU128]
gi|374840008|gb|EHS03515.1| ribonuclease Z [Staphylococcus epidermidis VCU129]
gi|394259010|gb|EJE03880.1| ribonuclease Z [Staphylococcus epidermidis NIHLM037]
gi|394273430|gb|EJE17861.1| ribonuclease Z [Staphylococcus epidermidis NIHLM015]
gi|394303908|gb|EJE47318.1| ribonuclease Z [Staphylococcus epidermidis NIH051475]
Length = 306
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS-----------PEVAFTGD 254
+ L+ + K E + E +I + P ++ GD
Sbjct: 152 APITPGTINVDALRDIGLEPGPKYQEVKLQETFEYKGLIYNSDDFKGKAKPGPIISIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E+ L A + ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 212 TKPCENEYKL------ANNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVN 263
Query: 312 AVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 264 KSLITHISNRYNIDEV 279
>gi|299769381|ref|YP_003731407.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
gi|298699469|gb|ADI90034.1| Ribonuclease Z [Acinetobacter oleivorans DR1]
Length = 324
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHIHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L+ L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LSYSLQFIDVNEVIKPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQTLTQLGV 170
Query: 222 -----YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-A 271
+ HLK + + ++ D I GD +L ADA + A
Sbjct: 171 PQGDMWGHLKRGYNVEFEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELL----ADACKDA 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
++LI E+T+L + + + H+ + E A+ ++LTHFS R+ +QA+
Sbjct: 227 QLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDRAGQQAI 285
>gi|432328975|ref|YP_007247119.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
gi|432135684|gb|AGB04953.1| ribonuclease Z [Aciduliprofundum sp. MAR08-339]
Length = 305
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 41/248 (16%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R + + +FITH H DH GL + + L + K P I+ P
Sbjct: 37 FDCGEGTQRQMMRTNMSFMKIKRIFITHYHGDHFLGLAGLIQTMALNDRKEPLEIYGPER 96
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+ + + F I + + L L+ E + D + +T H +PS Y I
Sbjct: 97 TVDILTRYFSI--GYYSTTFPVKLYELEGNEILDF-GDYTISTLRTKHPVPSLAYSIKEK 153
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSG--------VEITDII----LSPEVAFTGDTT 256
+ R K K + L K +EKL++ G + I D+ + ++ ++GDT
Sbjct: 154 DMPRIDRNKAKS--MKLNSKILEKLRREGEIEYRGKTIRIEDVSNGTRIGRKIVYSGDTA 211
Query: 257 -SEFMLNPRNADALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVL 314
+ M+N A A +LI EAT E S+E A ++GH+ + AK +L
Sbjct: 212 PMDEMINF----ARDASVLIHEAT---TESSLEDKANEYGHSSARQAARIAKRANVDTLL 264
Query: 315 LTHFSSRY 322
L H S RY
Sbjct: 265 LVHISPRY 272
>gi|421626628|ref|ZP_16067457.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
gi|408695899|gb|EKL41454.1| putative ribonuclease Z [Acinetobacter baumannii OIFC098]
Length = 324
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGI 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELL----ADACKD 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA
Sbjct: 226 AQLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 331 V 331
+
Sbjct: 285 I 285
>gi|418411915|ref|ZP_12985181.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
gi|420163124|ref|ZP_14669871.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|420167900|ref|ZP_14674552.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|420184477|ref|ZP_14690586.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|394234813|gb|EJD80387.1| ribonuclease Z [Staphylococcus epidermidis NIHLM095]
gi|394237928|gb|EJD83414.1| ribonuclease Z [Staphylococcus epidermidis NIHLM087]
gi|394257128|gb|EJE02050.1| ribonuclease Z [Staphylococcus epidermidis NIHLM040]
gi|410891498|gb|EKS39295.1| ribonuclease Z [Staphylococcus epidermidis BVS058A4]
Length = 306
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 44/256 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYPITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS-----------PEVAFTGD 254
+ + L+ + K E + E +I + P ++ GD
Sbjct: 152 APITPGTINVEALRDIGLEPGPKYQEVKLQETFEYKGLIYNSDDFKGKAKPGPIISIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E+ L +N+D ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 212 TKPCENEYEL-AKNSD-----LMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVN 263
Query: 312 AVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 264 KSLITHISNRYNIDEV 279
>gi|322368157|ref|ZP_08042726.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
gi|320552173|gb|EFW93818.1| ribonuclease Z [Haladaptatus paucihalophilus DX253]
Length = 308
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 42/253 (16%)
Query: 101 KCAFDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
+ FD G R + + + +FITH H DHI G+P V + + P I+ P
Sbjct: 32 RLLFDAGEGTQRQMMRFGTGFTVSDLFITHLHGDHILGIPGLVQTWDFNDRDDPLMIYTP 91
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+D++ L + +++ VA GE R++ VR F+T H S GY
Sbjct: 92 RGTGDDIDALVRTAGHQPSFPIHITEVA--PGEVAIRRDEYEVRTFRTDHDANSLGYA-- 147
Query: 213 LLRKKLKKQYIHLK--------GKQIEKLKKSG-VEITD-IILSPE-----------VAF 251
L+ + K ++ + G + ++L VE+ D ++ PE +
Sbjct: 148 LVEDERKGRFDRERAEELGVPVGPKFQQLHAGNPVELDDGTVVRPEQVVGEPRPGRRFVY 207
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
TGDT T + + NAD +L+ +ATF DD + A++ H+ + A+
Sbjct: 208 TGDTRPTEQVVSEAENAD-----LLVHDATFADDRK--DRARKTAHSTARQAGNVARRAD 260
Query: 310 NKAVLLTHFSSRY 322
+ +TH SSRY
Sbjct: 261 AARLAITHVSSRY 273
>gi|242242776|ref|ZP_04797221.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|416125248|ref|ZP_11595846.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|420174733|ref|ZP_14681181.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|420178202|ref|ZP_14684535.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|420180010|ref|ZP_14686270.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|420199438|ref|ZP_14705116.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
gi|242233912|gb|EES36224.1| ribonuclease Z [Staphylococcus epidermidis W23144]
gi|319400845|gb|EFV89064.1| ribonuclease Z [Staphylococcus epidermidis FRI909]
gi|394244637|gb|EJD89972.1| ribonuclease Z [Staphylococcus epidermidis NIHLM061]
gi|394246828|gb|EJD92080.1| ribonuclease Z [Staphylococcus epidermidis NIHLM057]
gi|394251442|gb|EJD96527.1| ribonuclease Z [Staphylococcus epidermidis NIHLM053]
gi|394272220|gb|EJE16689.1| ribonuclease Z [Staphylococcus epidermidis NIHLM031]
Length = 306
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 44/256 (17%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP TI P
Sbjct: 36 FDVGEGTQHQILRHSIKLGKIDHIFITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVI- 211
I+ +E ++ S LN + +++ + N V+ +H IPS GY I
Sbjct: 96 GIQNYIETSLQLSES----HLNYSITYIEINQQLAYHHNGFTVQAEMLNHGIPSFGYRIE 151
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS-----------PEVAFTGD 254
+ L+ + K E + E +I + P ++ GD
Sbjct: 152 APITPGTINVDALRDIGLEPGPKYQEVKLQETFEYKGLIYNSDDFKGKAKPGPIISIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E+ L A + ++I EAT+++ + + A + H+H+ ++ K
Sbjct: 212 TKPCENEYKL------ANNSDLMIHEATYIEGDKKL--ANNYHHSHIDDVFNLIKQANVN 263
Query: 312 AVLLTHFSSRYHIEDI 327
L+TH S+RY+I+++
Sbjct: 264 KSLITHISNRYNIDEV 279
>gi|147920763|ref|YP_685431.1| ribonuclease Z [Methanocella arvoryzae MRE50]
gi|110620827|emb|CAJ36105.1| RNase Z [Methanocella arvoryzae MRE50]
Length = 304
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 49/266 (18%)
Query: 101 KCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFV 151
+ FD G R + + +F+TH H DH G+P + + L +P I+
Sbjct: 31 RLLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYG 90
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVA--LDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P + VE+ + LG + L+ ++ L G+ + + V F+T H +PS GY
Sbjct: 91 P----DYVEEYCSLLSRLGYLSLSYQVIPRRLSPGDVIKFKG-YSVEAFRTFHSVPSLGY 145
Query: 210 VIYLLRKKL---KKQYIHL---KGKQIEKLKK------SGVEIT--DIILSPE----VAF 251
+ +K K + + L +G KL + +G IT +++ P + +
Sbjct: 146 ALKEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVY 205
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
TGDT ++ F+ + + AD + I+E+TF DD A++ H+ + E A
Sbjct: 206 TGDTVASASFLPHLQGAD-----VWISESTFGDDMAG--KAEETLHSTAGGVAELAARAG 258
Query: 310 NKAVLLTHFSSRYH------IEDIRQ 329
K ++LTH SSRY +ED R+
Sbjct: 259 VKQLVLTHVSSRYSTDTTPLLEDARK 284
>gi|56295604|emb|CAH04845.1| metal dependent hydrolase of beta-lactamase superfamily III (ElaC)
[uncultured archaeon]
Length = 312
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 49/266 (18%)
Query: 101 KCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFV 151
+ FD G R + + +F+TH H DH G+P + + L +P I+
Sbjct: 39 RLLFDCGEGTQRQMMKARSGFMDIGHMFLTHFHADHTLGIPGLLQTMSLQGRTEPLNIYG 98
Query: 152 PPSIKEDVEKLFEIHRSLGNVELNLDLVA--LDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
P + VE+ + LG + L+ ++ L G+ + + V F+T H +PS GY
Sbjct: 99 P----DYVEEYCSLLSRLGYLSLSYQVIPRRLSPGDVIKFKG-YSVEAFRTFHSVPSLGY 153
Query: 210 VIYLLRKKL---KKQYIHL---KGKQIEKLKK------SGVEIT--DIILSPE----VAF 251
+ +K K + + L +G KL + +G IT +++ P + +
Sbjct: 154 ALKEDQKPGRFNKARALELGVPEGPLFSKLHRGESVVVNGRTITSEEVVGEPRRGRTIVY 213
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
TGDT ++ F+ + + AD + I+E+TF DD A++ H+ + E A
Sbjct: 214 TGDTVASASFLPHLQGAD-----VWISESTFGDDMAG--KAEETLHSTAGGVAELAARAG 266
Query: 310 NKAVLLTHFSSRYH------IEDIRQ 329
K ++LTH SSRY +ED R+
Sbjct: 267 VKQLVLTHVSSRYSTDTTPLLEDARK 292
>gi|448512382|ref|ZP_21616371.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|448526826|ref|ZP_21619962.1| ribonuclease Z [Halorubrum distributum JCM 10118]
gi|445694350|gb|ELZ46480.1| ribonuclease Z [Halorubrum distributum JCM 9100]
gi|445698506|gb|ELZ50549.1| ribonuclease Z [Halorubrum distributum JCM 10118]
Length = 310
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ G+P V + G + P T+ P
Sbjct: 35 FDCGEGTQREMMRAGTGFAVDRVFVSHLHGDHVLGIPGLVQTLGFNDRTDPLTVHCPLGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ + L +H + + + + GE ++ VR F+T H SQGYV+
Sbjct: 95 DDHLHDL--VHAVGHDPAFPVRIEPVAPGEVAYETDEYEVRAFETEHRTVSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + +G+ +E + VE ++ P ++ +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHEGESVEAEDGTVVEPEQVVGPPRPGRKLVYTADT- 211
Query: 257 SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +LI +ATF DD + A+ H+ E A K +
Sbjct: 212 -----RPREATVEAAKDADLLIHDATFADD--MADRARDTAHSTGREAGSIADRADAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|336392452|ref|ZP_08573851.1| beta-lactamase superfamily hydrolase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 294
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 116/272 (42%), Gaps = 57/272 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R R + +FITH H DHI GLP +++SR P TI+ P
Sbjct: 36 FDVGEGTQQQILRTAIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGNQPLTIYGPKG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+++ V+ + S + VE+ +++ + +T++ V K H I S GY
Sbjct: 96 VRDYVQTSLRVSDSRLTYPIKYVEITDNMLVFE-DDTFK------VECRKLDHRIASFGY 148
Query: 210 VIY-------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VA 250
+ LL KL+ +Y +K Q L V + + P V
Sbjct: 149 RVIEKDHTGELLVDKLRAAGIKPGPEYGKIKAGQPVTLADGQVLPSSDFIGPAQKGRIVT 208
Query: 251 FTGDT--TSEFMLNPRNADALRAKILITEATF--LDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT T+ NAD +L+ E+TF D M A + H+ ++ E AK
Sbjct: 209 ILGDTRRTANCFTLAENAD-----VLVHESTFGKADGRM----AYNYYHSTSTQAAEVAK 259
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
K +LLTH S+RY + +A +LQS+
Sbjct: 260 KSHVKQLLLTHISARY----VGKAAHELQSEA 287
>gi|227827458|ref|YP_002829237.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|229584673|ref|YP_002843174.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238619614|ref|YP_002914439.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|385773135|ref|YP_005645701.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
gi|385775765|ref|YP_005648333.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|259494140|sp|C3N554.1|RNZ_SULIA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494141|sp|C4KGQ7.1|RNZ_SULIK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494143|sp|C3MYG0.1|RNZ_SULIM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|227459253|gb|ACP37939.1| ribonuclease Z [Sulfolobus islandicus M.14.25]
gi|228019722|gb|ACP55129.1| ribonuclease Z [Sulfolobus islandicus M.16.27]
gi|238380683|gb|ACR41771.1| ribonuclease Z [Sulfolobus islandicus M.16.4]
gi|323474513|gb|ADX85119.1| ribonuclease Z [Sulfolobus islandicus REY15A]
gi|323477249|gb|ADX82487.1| ribonuclease Z [Sulfolobus islandicus HVE10/4]
Length = 291
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 43/243 (17%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
++ A +GH+++++ + A K + LTH S RY ED+ + + KV+ +
Sbjct: 226 NE----PSACTYGHSNVADAAKVALEASVKLLALTHISPRY--EDVTEHL-----KVARR 274
Query: 342 VVP 344
+ P
Sbjct: 275 IFP 277
>gi|126320779|ref|XP_001364239.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Monodelphis
domestica]
Length = 368
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 121/304 (39%), Gaps = 80/304 (26%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLK-----PPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+FITH H DH GLP + + L N P I+ P ++ + K E+ S E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQNSSSASKTPMEIYGPVGLRNFIWKTMELSHS----E 113
Query: 174 LNL--------------------DLVALD------------------VGETYEMRND--I 193
L D +LD E+Y + ND
Sbjct: 114 LTFPYIVHELVPTEDQCPPGELKDFSSLDKMDSIPKEIQGRTILLDSAEESYVLVNDEQF 173
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEI 240
+V+ F+ H IPS G+ + + + LK G KLK ++GV++
Sbjct: 174 LVKAFRLFHRIPSFGFSVAEKERPGRLNAQKLKDLGVPPGPAYGKLKNGVTVVLENGVKV 233
Query: 241 T--DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294
+ D++ P ++ GD S + + A +L+ EAT D ++ A+++G
Sbjct: 234 SPQDVLEKPIPGRKICILGDC-SGVVGDGGVKLCFEADLLVHEATL--DNAHMDKAKEYG 290
Query: 295 HTHLSEIIENAKWIRNKAVLLTHFSSRY---------HIEDIRQAVLKLQSKVSAKVVPL 345
H+ E AK + K ++LTHFS RY +DIR+ + +S + + V L
Sbjct: 291 HSTPQMAAEFAKMCKVKKLVLTHFSQRYKPHLLSGEGEADDIRELKKQAESVLDFQEVTL 350
Query: 346 TEGF 349
E F
Sbjct: 351 AEDF 354
>gi|254827137|ref|ZP_05231824.1| metallo-beta-lactamase [Listeria monocytogenes FSL N3-165]
gi|258599520|gb|EEW12845.1| metallo-beta-lactamase [Listeria monocytogenes FSL N3-165]
Length = 306
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + +D G +E +V H + S GY I L +KLK + G
Sbjct: 116 NFE--EIDPGVIFE-DEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|448680389|ref|ZP_21690706.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
gi|445768833|gb|EMA19910.1| ribonuclease Z [Haloarcula argentinensis DSM 12282]
Length = 311
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + +P + P
Sbjct: 35 FDCGEGTQRQMMRFGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERPIAVHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ VR +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEVRAIETTHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKL-KKSGVEITDIILSPEV-----------AFTGDT- 255
R+K + ++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPARPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T + AD +L+ +ATF +D E A+ H+ E + A+ +
Sbjct: 213 PTESVIEASEGAD-----LLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTLA 265
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
LTH S+RY Q V + + +VV +G +
Sbjct: 266 LTHISTRYAAS-ADQLVDEARDAFDGEVVLAEDGME 300
>gi|422016908|ref|ZP_16363484.1| ribonuclease Z [Providencia burhodogranariea DSM 19968]
gi|414091338|gb|EKT53024.1| ribonuclease Z [Providencia burhodogranariea DSM 19968]
Length = 304
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 114/253 (45%), Gaps = 41/253 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + TI+ P +K +E I S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMGGSTDVLTIYGPKGLKLYIETTLSISESY--MTYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V ++ G+ ++ + +V + +H + GY I L +KL + I +G +
Sbjct: 117 IVEIESGQLFD-DGEFIVTAYPLNHRVECYGYRIQEHAKKGPLDVEKLAQDNIP-RGPWM 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
+ L K+G IT D + P+ +A GDT T + + ++AD ++
Sbjct: 175 QAL-KAGETITLEDGRSVNGADYLGEPKPGKVIAIFGDTEPTEQALFLAKDAD-----VM 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E T + + A + GHT + + A K + TH S RY ED+ + + +
Sbjct: 229 VHETTL--ENAYQQKANERGHTTTGQAAQLALDAGVKRFIATHISGRYSAEDMPKLLAEC 286
Query: 335 QSKVSAKVVPLTE 347
Q+ + P TE
Sbjct: 287 QA-----IFPATE 294
>gi|270291406|ref|ZP_06197628.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|418069400|ref|ZP_12706678.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
gi|270280252|gb|EFA26088.1| ribonuclease Z [Pediococcus acidilactici 7_4]
gi|357536869|gb|EHJ20897.1| beta-lactamase superfamily hydrolase [Pediococcus acidilactici
MA18/5M]
Length = 308
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR TI+ P IK+ V I + + +
Sbjct: 59 IFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKDFVMTALRISET--KLAYRIR 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL----- 225
V + G + VV + H I S G+ + LL KLK+ I
Sbjct: 117 FVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGELLVDKLKEMAIPAGPIYG 176
Query: 226 ---KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+GKQ+ ++ D I P+ V GDT + A A +L+ E+
Sbjct: 177 EIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQTANIEKL---AYHADVLVHES 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
TF E S+ A+++ H+ + A+ R K +LLTH S+RY
Sbjct: 234 TFGKQEGSL--ARKYYHSTNMQAARIAQKCRVKKLLLTHISARY 275
>gi|397780456|ref|YP_006544929.1| ribonuclease Z [Methanoculleus bourgensis MS2]
gi|396938958|emb|CCJ36213.1| ribonuclease Z [Methanoculleus bourgensis MS2]
Length = 317
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 107/242 (44%), Gaps = 35/242 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH G+ V + P I+ PP + E V+ + I R + +
Sbjct: 61 NAIFITHWHADHFLGVFGLVETLAFMGRTDPLPIYGPPWVGEFVDLVQGISRHVRGFSIT 120
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLK---KQYIHLK---GKQ 229
AL+ G N VR F T H IP GYV+ + + +Q I L G
Sbjct: 121 GH--ALEHGSVVPF-NGYTVRAFATFHGIPGLGYVLEEDERPGRFNREQAIALGIPPGPL 177
Query: 230 IEKLKKS--------GVEI----TDIILSP----EVAFTGDTTSEFMLNPRNADALR-AK 272
+L++ GVE +D++ P ++ +TGDT L P A +R A
Sbjct: 178 FGRLQRGEAIRIVCDGVETEVRPSDVMGEPRPGRKIVYTGDTRPLQRL-PDAAGMVRDAD 236
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIEDI 327
+LI +ATF D+E + A++ H+ E E A + + L H SSRY HI D
Sbjct: 237 LLIHDATFDDEEA--DRAREVLHSTAGEAGEAAAASGARMLALVHISSRYTSTANHIRDA 294
Query: 328 RQ 329
++
Sbjct: 295 KR 296
>gi|341820573|emb|CCC56855.1| ribonuclease Z [Weissella thailandensis fsh4-2]
Length = 343
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R R + +FITH H DHI GLP ++SR + TI+ P
Sbjct: 53 FDVGEGTQRQMLRSTIRPRKVTKIFITHLHGDHIYGLPGLLSSRSFQGGEDALTIYGPKG 112
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
I++ VE + ++ ++ + V L + G V H I S GY +
Sbjct: 113 IRQFVEVSLRVSQT--HLTYPIKFVELPETGGDVLQTEKFTVSALPLDHRITSFGYRVTE 170
Query: 213 ------LLRKKLKK-------QYIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGD 254
LL ++L++ Y LK GK + + D+I P+ VA GD
Sbjct: 171 HAHPGELLVERLRELNVPAGPLYGQLKQGKDVTLADGRTIHGADVIGDPQPGRCVAIMGD 230
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T T M RNAD +L+ E+T+ E + A+ H H + A +
Sbjct: 231 TRKTDNTMTLARNAD-----VLVHESTYGKGEG--KQARNHFHATSVQAATIADQAQVGR 283
Query: 313 VLLTHFSSRY 322
+LLTH S+RY
Sbjct: 284 LLLTHISARY 293
>gi|197284161|ref|YP_002150033.1| ribonuclease Z [Proteus mirabilis HI4320]
gi|254808654|sp|B4EUI8.1|RBN_PROMH RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|194681648|emb|CAR40697.1| ribonuclease Z [Proteus mirabilis HI4320]
Length = 305
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI GLP + SR + + P TI+ P IK +E + +S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLCSRSMGGTENPLTIYGPTGIKAFIETALTLSQSY--LTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE---- 231
LD++ ++ I H +P GY + K K L+ + I
Sbjct: 115 LDIIEIEQDGFLFEEEGIRASCGALSHPVPCFGYRLEEDNKPGKLNADKLETENIPRGPW 174
Query: 232 -KLKKSGVEIT----DII-----LSPE-----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KL K G +T II LS E + GDT T + NAD ++
Sbjct: 175 YKLLKQGKTVTLPDGRIIDGKDYLSTEIKGRCIVIFGDTQPTPNAVKLAENAD-----VI 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D + A GH+ + E AK K +++TH SSRY
Sbjct: 230 VHEATFKHD--MADKANSRGHSSTIQAAELAKKANAKRLIITHISSRY 275
>gi|421654189|ref|ZP_16094520.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
gi|408512039|gb|EKK13686.1| putative ribonuclease Z [Acinetobacter baumannii Naval-72]
Length = 324
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 30/239 (12%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL--- 225
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL Q +
Sbjct: 111 LPYSLQFIDVNEATPPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGV 170
Query: 226 -KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAK 272
KG LK+ VE IL + GD +L D A+
Sbjct: 171 PKGDMWGHLKQGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELLADTCKD---AQ 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 228 LLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|386041378|ref|YP_005960332.1| ribonuclease Z [Paenibacillus polymyxa M1]
gi|343097416|emb|CCC85625.1| ribonuclease Z [Paenibacillus polymyxa M1]
Length = 310
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 30/247 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +FITH H DH+ GLP ++SR P T++ PP +++ +E I
Sbjct: 48 RSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLQQYIELSLGIS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKK 220
+S N +L+ + G V H I S GY I L ++L +
Sbjct: 108 QSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRIVEMDKPGKLNQELLE 164
Query: 221 QYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPRNAD 267
+Y G KLK+ VE+ D++ SP+ V GDT P
Sbjct: 165 RYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIVTILGDTRP----CPNTVV 220
Query: 268 ALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
R A +++ EATFL D + A ++ H+ + E AK +++THFSSRY ++
Sbjct: 221 LARDATVVVHEATFLHD--LADTAYEYHHSTALQAAEAAKAAGAGQLIMTHFSSRYKDQE 278
Query: 327 IRQAVLK 333
Q +L+
Sbjct: 279 QLQPLLE 285
>gi|398311328|ref|ZP_10514802.1| ribonuclease Z [Bacillus mojavensis RO-H-1]
Length = 307
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 34/243 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQ--------Y 222
LV ++ E +D +V H + + GY + L+ L K+ Y
Sbjct: 115 LVIQEIEEGAVFEDDQFIVTAASAIHGVEAFGYRVQEKDMPGSLKAALLKEMSIPPGPVY 174
Query: 223 IHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+K +I L+ + L P V F+GDT + D +L+ E
Sbjct: 175 SKIKKGEIVTLEDGRTINGEDFLEPPKKGRAVVFSGDTRVSDKIKELARD---CDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF D++ + H T + + AK K ++LTH S+RY E A L+LQ +
Sbjct: 232 ATFAKDDVKLAFDYFHSTTEQAAV--TAKEAGAKQLILTHISARYQGE----ASLELQKE 285
Query: 338 VSA 340
+A
Sbjct: 286 AAA 288
>gi|310642368|ref|YP_003947126.1| ribonuclease z [Paenibacillus polymyxa SC2]
gi|309247318|gb|ADO56885.1| Ribonuclease Z [Paenibacillus polymyxa SC2]
Length = 320
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 113/259 (43%), Gaps = 38/259 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + +FITH H DH+ GLP ++SR P T++ PP
Sbjct: 46 FDCGEGTQQEVLRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPG 105
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+++ +E I +S N +L+ + G V H I S GY I
Sbjct: 106 LQQYIELSLGISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRIVEM 162
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDT 255
L ++L ++Y G KLK+ VE+ D++ SP+ V GDT
Sbjct: 163 DKPGKLNQELLERYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIVTILGDT 222
Query: 256 TSEFMLNPRNADALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
P R A +++ EATFL D + A ++ H+ + E AK ++
Sbjct: 223 RP----CPNTVVLARDATVVVHEATFLHD--LADTAYEYHHSTALQAAEAAKAAGAGQLI 276
Query: 315 LTHFSSRYHIEDIRQAVLK 333
+THFSSRY ++ Q +L+
Sbjct: 277 MTHFSSRYKDQEQLQPLLE 295
>gi|365157768|ref|ZP_09354014.1| ribonuclease Z [Bacillus smithii 7_3_47FAA]
gi|363622667|gb|EHL73819.1| ribonuclease Z [Bacillus smithii 7_3_47FAA]
Length = 310
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 103/232 (44%), Gaps = 36/232 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P T++ P I + + E+ + + L
Sbjct: 57 IFITHLHGDHIFGLPGLLGSRSFQAGETPLTVYGPKGIADFLRVSLEVSET--RLRYPLI 114
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++ G +E ++V H IPS GY I LL KLK+ I + G
Sbjct: 115 IEEIEEGIVFE-DEQMIVETRLLEHGIPSYGYRITEKDKPGVLLVDKLKEMGI-MPGPLY 172
Query: 231 EKLKKSG---VEITDIILSPE----------VAFTGDTTSEFMLNPRNAD---ALRAKIL 274
+K+K +E +I E VA GDT P A A A +L
Sbjct: 173 KKIKNGETVVLEDGRVIDGKEFVGPSKKGKVVAILGDT------RPCQAAVDLAKDADML 226
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+ E TF + S E A ++ H+ ++ E AK KA+ L H SSRY +E+
Sbjct: 227 VHEGTFSAE--SAEMAYEYFHSTTAQAAEIAKKANAKALCLNHVSSRYPVEE 276
>gi|326693133|ref|ZP_08230138.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc argentinum KCTC 3773]
Length = 314
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 109/250 (43%), Gaps = 38/250 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKHEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
IK+ V+ + + + L V L G ++ + V+ K H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPLVYVELTEGVIFDDKTFRVIAA-KMRHRIDTWGFRVE 152
Query: 213 -------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTS 257
LL +KL++Q + LK GK++ ++ D I + +
Sbjct: 153 EKDHPGELLVEKLREQNVPSGPVFGQLKAGKRVTLPDGRILDGRDYIGAAQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
F+L+ R D AL A +L+ E+T+ + + A+ H H+ A+
Sbjct: 209 TFILDTRPNDNIEVLALNADVLVHESTYGAGDEEAKMARAHAHSTSVSAANTARRAHVDK 268
Query: 313 VLLTHFSSRY 322
++LTH S+RY
Sbjct: 269 LILTHLSARY 278
>gi|227431959|ref|ZP_03913979.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352244|gb|EEJ42450.1| ribonuclease Z [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 318
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 106/251 (42%), Gaps = 40/251 (15%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FITH H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
+KE V+ I + + ++ V L G +E +V P + H I + G+ +
Sbjct: 96 KGVKEFVQTALRISET--RLSYPIEYVDLTEGVIFEDHTFQVVAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPEVAFTGDTT 256
LL KLK++ Y LK GK + + V D I +
Sbjct: 152 IEKDHPGELLVDKLKQENIPSGPVYGQLKAGKTVTLPEGRIVNGHDFIGKAQKG----RI 207
Query: 257 SEFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+L+ R D A A +L+ E+T+ E + A+ H H+ + A+
Sbjct: 208 VTLILDTRPNDNVEWLAKNADVLVHESTYGSSEEEAKMAKAHAHSTSANAASVARRAHVN 267
Query: 312 AVLLTHFSSRY 322
++LTH S+RY
Sbjct: 268 KLVLTHLSARY 278
>gi|386044285|ref|YP_005963090.1| ribonuclease Z [Listeria monocytogenes 10403S]
gi|404411278|ref|YP_006696866.1| ribonuclease Z [Listeria monocytogenes SLCC5850]
gi|345537519|gb|AEO06959.1| ribonuclease Z [Listeria monocytogenes 10403S]
gi|404231104|emb|CBY52508.1| ribonuclease Z [Listeria monocytogenes SLCC5850]
Length = 306
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + +D G +E +V H + S GY I L +KLK + G
Sbjct: 116 NFE--EIDPGVIFEDEM-FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|47096621|ref|ZP_00234209.1| metallo-beta-lactamase family protein [Listeria monocytogenes str.
1/2a F6854]
gi|254912536|ref|ZP_05262548.1| metallo-beta-lactamase family protein [Listeria monocytogenes
J2818]
gi|254936863|ref|ZP_05268560.1| metallo-beta-lactamase [Listeria monocytogenes F6900]
gi|284802422|ref|YP_003414287.1| hypothetical protein LM5578_2178 [Listeria monocytogenes 08-5578]
gi|284995564|ref|YP_003417332.1| hypothetical protein LM5923_2129 [Listeria monocytogenes 08-5923]
gi|386047629|ref|YP_005965961.1| ribonuclease Z [Listeria monocytogenes J0161]
gi|404414055|ref|YP_006699642.1| ribonuclease Z [Listeria monocytogenes SLCC7179]
gi|47015006|gb|EAL05951.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258609458|gb|EEW22066.1| metallo-beta-lactamase [Listeria monocytogenes F6900]
gi|284057984|gb|ADB68925.1| hypothetical protein LM5578_2178 [Listeria monocytogenes 08-5578]
gi|284061031|gb|ADB71970.1| hypothetical protein LM5923_2129 [Listeria monocytogenes 08-5923]
gi|293590521|gb|EFF98855.1| metallo-beta-lactamase family protein [Listeria monocytogenes
J2818]
gi|345534620|gb|AEO04061.1| ribonuclease Z [Listeria monocytogenes J0161]
gi|404239754|emb|CBY61155.1| ribonuclease Z [Listeria monocytogenes SLCC7179]
gi|441471759|emb|CCQ21514.1| Ribonuclease Z [Listeria monocytogenes]
gi|441474892|emb|CCQ24646.1| Ribonuclease Z [Listeria monocytogenes N53-1]
Length = 306
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + +D G +E +V H + S GY I L +KLK + G
Sbjct: 116 NFE--EIDPGVIFE-DEMFLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|433417601|ref|ZP_20404793.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|448573598|ref|ZP_21641081.1| ribonuclease Z [Haloferax lucentense DSM 14919]
gi|432199965|gb|ELK56089.1| ribonuclease Z [Haloferax sp. BAB2207]
gi|445718504|gb|ELZ70194.1| ribonuclease Z [Haloferax lucentense DSM 14919]
Length = 317
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THISARY 273
>gi|333395089|ref|ZP_08476908.1| beta-lactamase superfamily hydrolase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420146733|ref|ZP_14654114.1| Ribonuclease Z (RNase Z) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398400711|gb|EJN54250.1| Ribonuclease Z (RNase Z) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 317
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 58/284 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G R R + +FITH H DHI GLP +++SR P TI+ P
Sbjct: 36 FDVGEGTQQQILRTAIRPRKVEKIFITHLHGDHIFGLPGFLSSRSFQGGNQPLTIYGPKG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
+++ V+ + S + VE+ +++ + +T++ V K H I S GY
Sbjct: 96 VRDYVQTSLRVSDSRLTYPIKYVEITDNMLVFE-DDTFK------VECRKLDHRIASFGY 148
Query: 210 VIY-------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VA 250
+ LL KL+ +Y +K Q L V + + P V
Sbjct: 149 RVIEKDHTGELLVDKLRAAGIKPGPEYGKIKAGQPVTLADGQVLPSSDFIGPAQKGRIVT 208
Query: 251 FTGDT--TSEFMLNPRNADALRAKILITEATF--LDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT T+ NAD +L+ E+TF D M A + H+ ++ E AK
Sbjct: 209 ILGDTRRTANCFTLAENAD-----VLVHESTFGKADGRM----AYNYYHSTSTQAAEVAK 259
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
K +LLTH S+RY + +A +LQS+ + ++ P T K
Sbjct: 260 KSHVKQLLLTHISARY----VGKAAHELQSE-ARQIFPHTRVMK 298
>gi|386054232|ref|YP_005971790.1| ribonuclease Z [Listeria monocytogenes Finland 1998]
gi|346646883|gb|AEO39508.1| ribonuclease Z [Listeria monocytogenes Finland 1998]
Length = 306
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + +D G +E +V H + S GY I L +KLK + G
Sbjct: 116 NFE--EIDPGVIFEDEM-FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKVISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|317130922|ref|YP_004097204.1| ribonuclease Z [Bacillus cellulosilyticus DSM 2522]
gi|315475870|gb|ADU32473.1| ribonuclease Z [Bacillus cellulosilyticus DSM 2522]
Length = 304
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 41/261 (15%)
Query: 104 FDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G P + + N +FI+H H DHI GLP + SR + P T++ P
Sbjct: 35 FDCGEATQHQILHTPIKLRKINSIFISHLHGDHIFGLPGLLGSRSFQGAETPLTVYGPVG 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
I+ +E ++ + ++ + D G YE N+ +V H I S G+ +
Sbjct: 95 IQHFIETSLKVSTTYLKYPIHFKELEND-GVIYE-DNEYIVTTQLLEHGIDSYGFRVDQK 152
Query: 212 ----YLLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VAFTG 253
LL K+ I I K K G +T D I P+ VA G
Sbjct: 153 EQAGSLLMDKVVAAGI--PPGPILKDLKVGRSVTLQDGRVFHGEDFIGPPKKGKSVAVLG 210
Query: 254 DTTSEFMLNPRNADALRA-KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
DT + R+ + L+ EATF + I H H T E + AK R +
Sbjct: 211 DT----RFSSRSIALCKGVHTLVHEATFAHKDEQIAHEYFHATT--EEAAKVAKLSRVEQ 264
Query: 313 VLLTHFSSRYHIEDIRQAVLK 333
++LTH SSRY +D++Q +L+
Sbjct: 265 LILTHISSRYQKDDMKQLLLE 285
>gi|392972174|ref|ZP_10337566.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|403046500|ref|ZP_10901969.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
gi|392509887|emb|CCI60868.1| ribonuclease z [Staphylococcus equorum subsp. equorum Mu2]
gi|402763196|gb|EJX17289.1| hypothetical protein SOJ_15780 [Staphylococcus sp. OJ82]
Length = 306
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 44/280 (15%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTVVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIY 212
I++ +E ++ S LN + +++ E N V +H I S GY I
Sbjct: 96 GIQQFIETALQLSES----RLNYPITYIEIEEQLNYHHNGFNVNAHLLNHGITSYGYRIE 151
Query: 213 LLRKKLKKQYIHLK------GKQIEKLK------------KSGVEITDIILSPEVAFTGD 254
K LK G + + +K S D + P +A GD
Sbjct: 152 APYTPGKIDVQALKDIGLEPGPKYQDIKINETFEHNGLIYDSNQFKGDAVKGPVIAIFGD 211
Query: 255 TT---SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
T +E ++ A A +++ E+T+++ + + A + H+H+ ++ + + +
Sbjct: 212 TMPCKNELLI------AQDATVMVHESTYIEGDKML--ANNYHHSHIDDVFDLIDEAQVE 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351
L+TH S+RY E++ L+S+ + F S
Sbjct: 264 YSLITHISNRYTKEEVETISQSLKSRDTTPPFMFVNDFDS 303
>gi|300778911|ref|ZP_07088769.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
gi|300504421|gb|EFK35561.1| ribonuclease Z [Chryseobacterium gleum ATCC 35910]
Length = 304
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 31/238 (13%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEI- 165
+ R + N +FI+H H DH GLP +AS R L P ++ P IK+ +E +F+I
Sbjct: 47 KAKARFSKINHIFISHLHGDHCFGLPGLIASFRLLGRENPLHVYGPKGIKKMLETIFQIT 106
Query: 166 --HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI 223
HR V LD D E N I V H I G YL ++K K +++
Sbjct: 107 ETHRGFEVVYHELD---KDYSEKIYEDNRIEVYTIPLDHRIYCNG---YLFKEKPKDRHL 160
Query: 224 HLKG----KQIEKLKKSGVEI-TDIILSPEVAFTGD---------TTSEFMLNPRNADAL 269
++K +IE ++ D +LS + + F + R +++
Sbjct: 161 NMKEIAKYSEIETCDYHNIKAGKDFVLSDGYVLKNEILTVDPAPSVSYAFCSDTRYLESV 220
Query: 270 -----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L E+TFL D E A GHT E A+ + ++L HFS+RY
Sbjct: 221 IPIIKNVTVLYHESTFLHDLK--EMADYTGHTTALEAATIAQKAQVGKLILGHFSNRY 276
>gi|304385117|ref|ZP_07367463.1| ribonuclease Z [Pediococcus acidilactici DSM 20284]
gi|427439818|ref|ZP_18924382.1| ribonuclease Z [Pediococcus lolii NGRI 0510Q]
gi|304329311|gb|EFL96531.1| ribonuclease Z [Pediococcus acidilactici DSM 20284]
gi|425787950|dbj|GAC45170.1| ribonuclease Z [Pediococcus lolii NGRI 0510Q]
Length = 330
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 27/224 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++SR TI+ P IK+ V I + + +
Sbjct: 81 IFISHLHGDHIFGLPGFLSSRSNQGGDSELTIYGPAGIKDFVMTALRISET--KLAYRIR 138
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL----- 225
V + G + VV + H I S G+ + LL KLK+ I
Sbjct: 139 FVEITKGGKLFEDANYVVEVAELDHRIKSYGFRVREKDHPGELLVDKLKEMAIPAGPIYG 198
Query: 226 ---KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+GKQ+ ++ D I P+ V GDT + A A +L+ E+
Sbjct: 199 EIKQGKQVTLPDGKVIDGKDFIGKPQPGRVVTILGDTRQTANIEKL---AYHADVLVHES 255
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
TF E S+ A+++ H+ + A+ R K +LLTH S+RY
Sbjct: 256 TFGKQEGSL--ARKYYHSTNMQAARIAQKCRVKKLLLTHISARY 297
>gi|297527193|ref|YP_003669217.1| beta-lactamase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256109|gb|ADI32318.1| beta-lactamase domain protein [Staphylothermus hellenicus DSM
12710]
Length = 251
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 88/229 (38%), Gaps = 49/229 (21%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
D+G C R + + ITH H DH GL S L N K + P+
Sbjct: 34 LDVGEGCQQRLFEAGLGLVKIKTIMITHLHGDHYLGLFGMFQSMHLSNRKNELYLIAPAK 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+D+ K F I L + + V GE Y N I V FK H I + GY + L
Sbjct: 94 LKDLLKKF-IELGLAKIAYPIYFVEAKEGELYR-DNKISVEAFKVVHGIEAYGYKLTL-- 149
Query: 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRAKI 273
K+G + +TGDT + +NAD I
Sbjct: 150 -------------------KNG---------KRIVYTGDTKPFEDLESIAKNAD-----I 176
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ EATF D E A + GH+ ++ A K ++LTH SSRY
Sbjct: 177 LVHEATFTSDLR--EEAWEQGHSTAADAAITAYKANVKELVLTHISSRY 223
>gi|444350343|ref|YP_007386487.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
gi|443901173|emb|CCG28947.1| Ribonuclease Z (EC 3.1.26.11) [Enterobacter aerogenes EA1509E]
Length = 306
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 30/230 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P IKE +E + S + L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETALRLSGSWTDYPLT 117
Query: 176 LDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI------------YLLRKKLKKQ- 221
+ ++VG D V + H + GY I L+ ++
Sbjct: 118 I----IEVGPGLVFDEDGYRVSAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVRPGP 173
Query: 222 -YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILI 275
+ LK Q +L+ V L P +A GDT P+ + R +I
Sbjct: 174 LFHQLKLGQRVELEDGRVIDGSRYLGPSTPGKTLAIFGDTAP----CPQALEMARGADVI 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 230 VHETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|16804016|ref|NP_465501.1| hypothetical protein lmo1977 [Listeria monocytogenes EGD-e]
gi|386050953|ref|YP_005968944.1| ribonuclease Z [Listeria monocytogenes FSL R2-561]
gi|404284473|ref|YP_006685370.1| ribonuclease Z [Listeria monocytogenes SLCC2372]
gi|405759027|ref|YP_006688303.1| ribonuclease Z [Listeria monocytogenes SLCC2479]
gi|41017570|sp|Q8Y5S8.1|RNZ_LISMO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|16411430|emb|CAD00055.1| lmo1977 [Listeria monocytogenes EGD-e]
gi|346424799|gb|AEO26324.1| ribonuclease Z [Listeria monocytogenes FSL R2-561]
gi|404233975|emb|CBY55378.1| ribonuclease Z [Listeria monocytogenes SLCC2372]
gi|404236909|emb|CBY58311.1| ribonuclease Z [Listeria monocytogenes SLCC2479]
Length = 306
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 105/231 (45%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + ++ G +E + IV H + S GY I L +KLK + G
Sbjct: 116 NFE--EIEPGVIFEDKMFIVTAD-DLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T+SE L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTRETSSELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|424034510|ref|ZP_17773915.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-01]
gi|408872698|gb|EKM11908.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-01]
Length = 322
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 39/240 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P E +++ FE ++ + L +L
Sbjct: 58 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---EGIKQWFEATQAFTKLYLPFEL 114
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYV-------IYLLRKKLKKQYIH------ 224
++V + + + H +PS Y +Y KL++ I
Sbjct: 115 HFIEVEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQLNIPRGPIWG 174
Query: 225 --LKGKQIEKLKKSGVE--ITDIILSP-EVAFTGDTTSEFMLNPRNADAL--RAKILITE 277
++G +E ++ + T + P +V GD P D+L A +L+ E
Sbjct: 175 ELVRGNDVEYQGQTLMSKAFTKLAHPPRKVIICGDND-----KPEKLDSLIEGAHLLVHE 229
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQ 329
+T+ E E A + GH + S++ A+ + +++LTHFS RY IE IRQ
Sbjct: 230 STY--SEAMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQFSPEAEVSIEQIRQ 287
>gi|448597745|ref|ZP_21654670.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
gi|445739206|gb|ELZ90715.1| ribonuclease Z [Haloferax alexandrinus JCM 10717]
Length = 315
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDDSLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E+L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKGHLEQL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARVARDADVRRFAL 264
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 265 THISARY 271
>gi|403380617|ref|ZP_10922674.1| ribonuclease Z [Paenibacillus sp. JC66]
Length = 314
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 38/258 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G + P + + N +F+TH H DH+ GLP ++ SRG P T++ P
Sbjct: 36 FDCGEGTQQQILKSPLKMSKINKLFVTHLHGDHVYGLPGFLTSRGYQGGTSPFTLYGPKG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+K +E F I S +VE L +V ++ G + V + H I S GY I
Sbjct: 96 VKTFIETAFSI--SDAHVEYELSIVEIEPGTIF-TDGQYTVHAERLEHRIESFGYRIEEA 152
Query: 212 ----YLLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM 260
L ++L++ Y LK + L+ L P + G T +
Sbjct: 153 NKPGCLDAEQLRQLGVPNGPLYGRLKKGETITLEDGRTLRGSDFLGP--GYYGRTVV-IL 209
Query: 261 LNPRNADALR-----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+ R +A + A +++ EATF ++ + A H + I R+ ++L
Sbjct: 210 GDTRYCEAAKKLSNQADVVVHEATFAREKSDLATAYYHATAEQAAITARDAGARH--LIL 267
Query: 316 THFSSRYHIEDIRQAVLK 333
TH S RY ED + +L+
Sbjct: 268 THISQRY--EDDAEPLLQ 283
>gi|116492893|ref|YP_804628.1| beta-lactamase superfamily hydrolase [Pediococcus pentosaceus ATCC
25745]
gi|122265643|sp|Q03F36.1|RNZ_PEDPA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116103043|gb|ABJ68186.1| RNAse Z [Pediococcus pentosaceus ATCC 25745]
Length = 308
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR TIF P IK+ V I S + +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSLRISESKLSYRIKFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+A + G +E +N +V + H I S G+ + LL KLK+ Y
Sbjct: 119 EIAQE-GVLFEDQN-YIVNVAELDHRIKSYGFRVKEKDHPGELLVDKLKELAIPSGPIYG 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K GK++ + D I P+ V GDT T L ++ADA L+
Sbjct: 177 QIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQTPNIELLAKDADA-----LVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF E S+ A+ + H+ + + AK + +LLTH S+RY
Sbjct: 232 ESTFGKQEGSL--ARNYYHSTNIQAAKIAKQANARQLLLTHISARY 275
>gi|448589300|ref|ZP_21649459.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
gi|445735728|gb|ELZ87276.1| ribonuclease Z [Haloferax elongans ATCC BAA-1513]
Length = 312
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDSLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K+ ++KL +H ++ + G +D +R F+T H S GY +
Sbjct: 94 SKQHLKKL--VHAGGYQPGFHVSVHETRPGNVAYRGDDYEIRAFETEHRTSSVGYALVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
R+K ++ + + G+ +E + ++ D++ P +V +TGDT
Sbjct: 152 DRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A + H+ E A+ + L
Sbjct: 212 RP---LDGTIEIARDADLLVHDATFTDEEA--ERAAKTAHSTAREAARVARDANVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THISARY 273
>gi|421894260|ref|ZP_16324750.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
gi|385272804|emb|CCG90122.1| ribonuclease Z [Pediococcus pentosaceus IE-3]
Length = 308
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR TIF P IK+ V I S + +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSNQGGSEELTIFGPTGIKDFVMTSLRISESKLSYRIKFV 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+A + G +E +N +V + H I S G+ + LL KLK+ Y
Sbjct: 119 EIAQE-GVLFEDQN-YIVNVAELDHRIKSYGFRVKEKDHSGELLVDKLKELAIPSGPIYG 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K GK++ + D I P+ V GDT T L ++ADA L+
Sbjct: 177 QIKQGKEVTLDDGRVINGQDFIGKPQPGRVVTVLGDTRQTPNIELLAKDADA-----LVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF E S+ A+ + H+ + + AK + +LLTH S+RY
Sbjct: 232 ESTFGKQEGSL--ARNYYHSTNIQAAKIAKQANARQLLLTHISARY 275
>gi|448622372|ref|ZP_21669066.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
gi|445754454|gb|EMA05859.1| ribonuclease Z [Haloferax denitrificans ATCC 35960]
Length = 317
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DHI G+P + + + + I PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLDFNDREASLAIHGPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 95 KGHLETL--VHAGGYQPGFHVSIHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTT 256
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 153 RPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + LT
Sbjct: 213 P---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFALT 267
Query: 317 HFSSRY 322
H S+RY
Sbjct: 268 HISARY 273
>gi|320100786|ref|YP_004176378.1| RNAse Z [Desulfurococcus mucosus DSM 2162]
gi|319753138|gb|ADV64896.1| RNAse Z [Desulfurococcus mucosus DSM 2162]
Length = 249
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 97/241 (40%), Gaps = 50/241 (20%)
Query: 104 FDIGR-CPTRAIQQNF-------VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD+G C ++ ++ VF+TH H DH GLP + + GL K P + P
Sbjct: 34 FDVGEGCQSKMLKAGLSPLKVKAVFVTHPHGDHYLGLPGVIQTMGLTGRKEPLKLLLPRE 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
++ +L + R L ++ L GE Y I VR + +H + + G+
Sbjct: 94 LDEYFRLI-LERKLLKPGFPVEFTVLANGEVYR-DEKISVRAYPVNHGVEAYGF------ 145
Query: 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAKI 273
++ + GK + +TGDT S + N R D +
Sbjct: 146 ------HVAVAGKTL-------------------CYTGDTMPCSSVVENCRGVD-----V 175
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
LI E+TF D H + H T + A +++LTH S+RY ED+ + L+
Sbjct: 176 LIHESTFTSDMGPEAHEEYHSTTR--DAASAALEAGAASLVLTHISARYSDEDVLRDGLR 233
Query: 334 L 334
Sbjct: 234 F 234
>gi|262046039|ref|ZP_06019003.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295692862|ref|YP_003601472.1| ribonuclease z [Lactobacillus crispatus ST1]
gi|260573998|gb|EEX30554.1| ribonuclease Z [Lactobacillus crispatus MV-3A-US]
gi|295030968|emb|CBL50447.1| Ribonuclease Z [Lactobacillus crispatus ST1]
Length = 312
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 33/227 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I+E V ++ R+ +++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRT----KISYP 114
Query: 178 LVALDVGETYEMRNDIVVRPF--KTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
+ +++ ++ + D R + + H IPS G+ + LL KL QY G
Sbjct: 115 IRFVELAKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKL-AQYNVPNGP 173
Query: 229 QIEKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADAL-----RAKILITEA 278
+ KLK V + D + F G T S + + R+ ++ A +L+ E+
Sbjct: 174 LLGKLKNGEKVTLADGTVLDGKNFLGPTKSGRIVTVIYDTRSTPSIARLAKDADVLVHES 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN---KAVLLTHFSSRY 322
TF DE + H H S +E AK R K + L H S+RY
Sbjct: 234 TFAGDEQKLAHDYYH-----STSVEAAKIARKDNVKLLCLNHISARY 275
>gi|448578910|ref|ZP_21644269.1| ribonuclease Z [Haloferax larsenii JCM 13917]
gi|445724838|gb|ELZ76465.1| ribonuclease Z [Haloferax larsenii JCM 13917]
Length = 312
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDSLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K+ ++KL +H ++ + G +D +R F+T H S GY +
Sbjct: 94 SKQHLKKL--VHAGGYQPGFHVSVHETRPGNVAYRGDDYEIRAFETEHRTSSVGYTLVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
R+K ++ + + G+ +E + ++ D++ P +V +TGDT
Sbjct: 152 DRPGRFNREKAEELGVPVGPAFGRLHSGEDVELEDGTVIKSEDVVGDPRPGRKVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A + H+ E A+ + L
Sbjct: 212 RP---LDRTIEIARDADLLVHDATFTDEEA--ERAAKTAHSTAREAARVARDANVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THISARY 273
>gi|345559789|gb|EGX42921.1| hypothetical protein AOL_s00215g870 [Arthrobotrys oligospora ATCC
24927]
Length = 438
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 197 PFKTH-----------HVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIIL 245
P KTH H +PS G++ +LK +Y L G +++ L++ GV+IT
Sbjct: 255 PLKTHPTISVSILPRSHTVPSVGFLFTQTSNRLKSEYRSLPGTELKNLRQQGVDITYQHR 314
Query: 246 SPEVAFTGD-------TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
+P AF GD E+++ + ++ITE +FL + + A + HT
Sbjct: 315 TPIFAFLGDGDHTSLLGDPEWLVGNEDKGISGCPVVITECSFLYESHRAQ-AVKTKHTIW 373
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
++ + R+ +L HFS RY
Sbjct: 374 KDLEPIVRRHRDTTWVLMHFSKRY 397
>gi|384134378|ref|YP_005517092.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339288463|gb|AEJ42573.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 313
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ P I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLQLYGPAGIRAFVRAT 103
Query: 163 FEIHRSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVI--YLLRKKLK 219
++ ++ ++ + E R + VR H IPS GY I +L
Sbjct: 104 LDLSQT--HLSYAIQFHEWTSPEPEPFREGLYTVRAALLDHAIPSYGYRIEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ + +G Q L K+G ++T D + E +A GDT
Sbjct: 162 AEQLRAEGLQPSPLWARLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
P A A A L+ EATFLD + A H+ + E A+ K ++LTH S
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHL--ASAFFHSTARQAAEIAREAGAKCLILTHLS 273
Query: 320 SRY 322
+RY
Sbjct: 274 ARY 276
>gi|229578965|ref|YP_002837363.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|229582282|ref|YP_002840681.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284997568|ref|YP_003419335.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
gi|259494144|sp|C3NHZ9.1|RNZ_SULIN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494145|sp|C3NDQ2.1|RNZ_SULIY RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|228009679|gb|ACP45441.1| ribonuclease Z [Sulfolobus islandicus Y.G.57.14]
gi|228012998|gb|ACP48759.1| ribonuclease Z [Sulfolobus islandicus Y.N.15.51]
gi|284445463|gb|ADB86965.1| ribonuclease Z [Sulfolobus islandicus L.D.8.5]
Length = 291
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 43/243 (17%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
ITH H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ITHMHGDHVFGLLGVIASMGLLDRKETLYILGPRDLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----YLLRKKLKKQYIHLKGKQIEKLK 234
+ Y +N I + FKT H + SQGY+I + ++ ++ + + KLK
Sbjct: 117 -----DNYNDQN-ITIATFKTCHTVESQGYLISERDRVKIDEEKLEKEKIKDWRVMRKLK 170
Query: 235 KS-GVEITDIILSPE----------VAFTGDT--TSEFMLNPRNADALRAKILITEATFL 281
+ VE L PE VA+TGDT + + + D +LI ++TFL
Sbjct: 171 EGKTVEYNGKFLKPEDYLVIKRGLKVAYTGDTIPCQSVIESVKGVD-----LLIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
++ A +GH+++++ + A K + LTH S RY ED+ + + KV+ +
Sbjct: 226 NE----PSAFTYGHSNVADAAKVALEASVKLLALTHISPRY--EDVTEHL-----KVARR 274
Query: 342 VVP 344
+ P
Sbjct: 275 IFP 277
>gi|222153269|ref|YP_002562446.1| ribonuclease Z [Streptococcus uberis 0140J]
gi|254808674|sp|B9DUP5.1|RNZ_STRU0 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|222114082|emb|CAR42499.1| ribonuclease Z [Streptococcus uberis 0140J]
Length = 309
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 49/250 (19%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRS 168
R IQ+ +FITH H DHI GLP +++SR + T IF P IK V+ I +
Sbjct: 54 RKIQK--IFITHLHGDHIFGLPGFLSSRAFQASEEQTDIEIFGPLGIKSFVQNSLAISGT 111
Query: 169 LGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG 227
+++ + D+G+ E + +V K H I GY + ++K L+
Sbjct: 112 RLPYKIHFHEFTDKDMGKIMET-DKFLVYAEKLAHTIFCMGYRV--VQKDLEGTL----- 163
Query: 228 KQIEKLKKSGVEI----------TDIILSPE-----------------VAFTGDTTSEFM 260
E LKK+GV DI+L + GDT
Sbjct: 164 -DAEALKKAGVPFGPLFGKIKNGQDIVLDDGRQILAKDYISEPKKGKVITILGDTRK--- 219
Query: 261 LNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
P + AL A +L+ E+T+ + I A+ HGH+ + + AK K +LL H S
Sbjct: 220 -TPASQRLALNADVLVHESTYGKGDDRI--ARNHGHSTNMQAAQIAKDANVKRLLLNHVS 276
Query: 320 SRYHIEDIRQ 329
+R+ D RQ
Sbjct: 277 ARFLSRDCRQ 286
>gi|170590780|ref|XP_001900149.1| metallo-beta-lactamase superfamily protein [Brugia malayi]
gi|158592299|gb|EDP30899.1| metallo-beta-lactamase superfamily protein [Brugia malayi]
Length = 784
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 31/267 (11%)
Query: 99 ELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIK-- 156
+L+ F C ++ + VFITHGH DH G+ V R +K + P +
Sbjct: 471 QLRTLFGDVACEDLLLKLSAVFITHGHQDHYHGIFTIVQCRKELFMKRGMTYKPLIVAGG 530
Query: 157 EDVEKLF-EIHRSLGNVELNLDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
V K+F ++ RS GN ++ +V + + T + + IP + I +
Sbjct: 531 NHVLKVFRDVDRSFGNYTRDMHIVNISKILWTLSQQKGGPIEAVDLTGEIPPE---IIDI 587
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKIL 274
K K I +K G TD+ + + F+GDT L DAL +L
Sbjct: 588 EKLGFKSVIAVKVNHART--AVGYIFTDL-KNQKFVFSGDTMPCEQLVNHGKDAL---VL 641
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY--------HIED 326
+ E+TF DDE + HA H+ + + + A + K ++LTHFS++Y +IE
Sbjct: 642 VHESTFGDDEEA--HALYKKHSTMKQAFDVAARMGAKNLVLTHFSAKYPKVPPLPDYIEK 699
Query: 327 IRQAVLKLQS--------KVSAKVVPL 345
+ + + K+SAK++P+
Sbjct: 700 AGNVTIAMDNMIVTPSDLKLSAKLIPV 726
>gi|448543944|ref|ZP_21625405.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|448558521|ref|ZP_21633078.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
gi|445706086|gb|ELZ57973.1| ribonuclease Z [Haloferax sp. ATCC BAA-646]
gi|445712273|gb|ELZ64055.1| ribonuclease Z [Haloferax sp. ATCC BAA-644]
Length = 317
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 35 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 94 SKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 151
Query: 213 -----LLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 152 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 212 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THVSARY 273
>gi|379728704|ref|YP_005320900.1| ribonuclease Z [Saprospira grandis str. Lewin]
gi|378574315|gb|AFC23316.1| ribonuclease Z [Saprospira grandis str. Lewin]
Length = 304
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 39/280 (13%)
Query: 94 CVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVP 152
C+I C + R +A Q +FI+H H DH+ GL + S GL K ++ P
Sbjct: 34 CLIDCGEGCQIAVQRYQVKAFQIKDIFISHLHGDHVLGLMGLLMSFGLNQRKKKLRLYGP 93
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRND---IVVRPFKTHHVIPSQG 208
I+E V E+ L N L+ L + E E+ D V H + QG
Sbjct: 94 KGIREWV----EVQMRLMNAHLSYPLEIRECDSEQSELLLDTPSFQVFSLPLAHRLACQG 149
Query: 209 YVIYLLRKKLKKQYIHLKGKQIEKLK---------KSGVEITD----------IILSPEV 249
++ K K + +++ +I +L K+G TD + P
Sbjct: 150 FLF-----KEKPAHPNMRKDRILELDIPFRQIPAIKAGGGFTDAEGKFWPHEELCTPPPP 204
Query: 250 AFTGDTTSEFMLNPRNADALRA-KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
T S+ +P A+ +R +L EATFL + +++A++ GH+ + E AK
Sbjct: 205 PRTYAYCSDTAFHPPLAELIRGVDLLYHEATFLHE--LLKNAKKTGHSTAKQAGEMAKLA 262
Query: 309 RNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEG 348
+ K +L+ HFS+RY +D + + + QS+ A+ EG
Sbjct: 263 QVKKLLIGHFSTRY--QDTKALLEEAQSEF-AQTAAAEEG 299
>gi|406669566|ref|ZP_11076836.1| ribonuclease Z [Facklamia ignava CCUG 37419]
gi|405583262|gb|EKB57230.1| ribonuclease Z [Facklamia ignava CCUG 37419]
Length = 317
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 28/232 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + I+ PP IKE ++ + +S +++D
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGETSLNIYGPPGIKEYIQSNLRLTKSRLTYPIHID 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+ GE + +V+ H + S GY I LL +L K Y
Sbjct: 119 ELNPKGGE-LTTSSGWLVKYLPLQHGVLSLGYRIEQPDKPGELLIDQLAKYSIPNGPIYG 177
Query: 224 HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK +I L ++P+ + GDT + + A A +L+ EA
Sbjct: 178 QLKRGEIVTLADGTQLDGRDFIAPDQKGKIITILGDTR---LCDNSRILAKDADVLVHEA 234
Query: 279 TFLDDEMSIEHAQQHG-HTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
T +E + +A H + H +++ AK K +LL H S RY +DIR+
Sbjct: 235 THSGEEGQMAYAYYHSTNIHAAQV---AKEANVKLLLLNHISPRYTNQDIRE 283
>gi|410454063|ref|ZP_11308006.1| ribonuclease Z [Bacillus bataviensis LMG 21833]
gi|409932743|gb|EKN69701.1| ribonuclease Z [Bacillus bataviensis LMG 21833]
Length = 307
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 102/257 (39%), Gaps = 36/257 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + T++ P IKE + + SL L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGESEVTVYGPKGIKEYI----HVSLSLSQTYLKYQ 114
Query: 178 L-VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH----- 224
L V +V H IPS GY I LL KL + +
Sbjct: 115 LTVIEIEEGIIFEDEQFIVETRLLEHGIPSYGYRIVEKDRPGTLLADKLMEAGVQPGPIF 174
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
+K + L+ V L P + GDT +L +NAD +LI
Sbjct: 175 RKIKNGETVTLEDGRVIEPGEFLGPVQKGRIITILGDTRYCENALLLAKNAD-----LLI 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF E + + H TH + I A +K + LTH SSRY D R+ V + +
Sbjct: 230 HEATFSKGEEKLAYDYFHSTTHQAADI--ALRAGSKQLCLTHISSRYDRNDWRELVKEAK 287
Query: 336 SKVSAKVVPLTEGFKSV 352
S + E FK +
Sbjct: 288 EIFSN--TEIAEDFKEI 302
>gi|448737743|ref|ZP_21719778.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
gi|445803299|gb|EMA53597.1| ribonuclease Z [Halococcus thailandensis JCM 13552]
Length = 305
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 108/265 (40%), Gaps = 54/265 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VF++H H DH+ GLP + + + I PP
Sbjct: 33 FDCGEGTQRQMMRFGTGFSVSHVFLSHLHGDHVLGLPGLCQTLDFNDREEALAIHTPPGT 92
Query: 156 KEDVEKLFEIHRSLGNV-----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV 210
K VE L + + E+ +AL E YE VR F+T H S GY
Sbjct: 93 KSAVENLVGVTGARPGYPIRVHEVQPGGIALRE-EEYE------VRAFETDHRTRSVGYA 145
Query: 211 IYLLRKKLKKQYIHLKGKQI---------EKLKKSGVEITD-IILSPE-----------V 249
L+ K ++ + +++ E + + VE+ D ++ PE +
Sbjct: 146 --LVEDDRKGRFDRERAEELGVPAGPLFSELHEGNAVELDDGTVVDPEQVVGPPRPGRKI 203
Query: 250 AFTGDTTSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
+TGDT P A A A +L+ EA+F +D E A + GH+ + + A
Sbjct: 204 VYTGDT------RPTGATVEAADDADLLVHEASFGEDRS--ERAGKTGHSTARQAADLAT 255
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAV 331
K + LTH SSRY E R A
Sbjct: 256 RADAKRLALTHVSSRYAGESDRLAA 280
>gi|332159416|ref|YP_004424695.1| ribonuclease Z [Pyrococcus sp. NA2]
gi|331034879|gb|AEC52691.1| ribonuclease Z [Pyrococcus sp. NA2]
Length = 307
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P V + L+ + P I+ P +E L + G E D
Sbjct: 57 IFITHFHGDHYLGIPALVQTMSLWKRRDPLHIYGPEGASTFIENLLK----SGYFEPPFD 112
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKK-----LKKQYIHLK-GKQI 230
++ ++ Y ++ + + F+ H IP+ GYV K+ K + + LK G +
Sbjct: 113 VIVHEIPGKYRLKFENYEIWSFEVSHGIPALGYVFKERDKRGNFDLEKIKRLGLKPGSWM 172
Query: 231 EKLKKSGV-EITDIIL-----------SPEVAFTGDTTSEFMLNPRNADAL---RAKILI 275
++L+K + EI I+ ++ +TGDT P L RA ILI
Sbjct: 173 KELEKKKILEINGTIIRLSDVTGPKKRGAKIVYTGDT------EPCENVTLFSKRATILI 226
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
EAT++ +E E HT + E E + K +++ H RY + ++ V ++
Sbjct: 227 HEATYVSEEDRGESY----HTTIREACETWHDSKAKMLVMFHRGPRYSYAEYKRKVFEI 281
>gi|448551104|ref|ZP_21629246.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
gi|445710660|gb|ELZ62458.1| ribonuclease Z [Haloferax sp. ATCC BAA-645]
Length = 315
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + ++ + PP
Sbjct: 33 FDCGEGTQRQMMRYGTGFGVSHLFVTHLHGDHILGIPGLIQTLD-FNDRDASLAIHGPPG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +E L +H ++ + + G +D VR F T H S GY +
Sbjct: 92 SKRHLETL--VHAGGYQPGFHVSVHEVRPGNVAYRADDYEVRAFDTEHRTASVGYALVED 149
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
R+K ++ + + G+ +E + V ++ P V +TGDT
Sbjct: 150 DRPGRFDREKAEELGVPVGPAFGRLHAGEDVELEDGTVVRSEQVVGDPRPGRTVVYTGDT 209
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A+Q H+ E A+ + L
Sbjct: 210 RP---LDSTVEVARDADLLVHDATFTDEEA--ERAKQTAHSTAREAARIARDADVRRFAL 264
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 265 THVSARY 271
>gi|429767458|ref|ZP_19299655.1| ribonuclease Z [Clostridium celatum DSM 1785]
gi|429180868|gb|EKY22069.1| ribonuclease Z [Clostridium celatum DSM 1785]
Length = 315
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 31/230 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLG---NV 172
+ + ITH H DHI GLP +A+ G L+P TI P I E V L I + L N+
Sbjct: 55 DVIMITHCHGDHIVGLPGILATIGNSGRLEPLTIIGPQGITEVVNSLRVIAKYLPYDINI 114
Query: 173 -----ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYI 223
E+NL++ ++ E + +I + + H P GY Y R + K +
Sbjct: 115 IENPREVNLNVTKENI-NVVEEKGEIKLTTLEVEHSSPCIGYSFYFRRDRKFSVDKAEKN 173
Query: 224 HLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT---------SEFMLNPRNADAL----- 269
+ KL+K G++ ++I+ +TG+ + + R + +
Sbjct: 174 RVPKILWNKLQKGGID--EVIVYDGKEYTGEMVLGDERRGIKLSLITDSRPKEEMIDFIK 231
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ + I E T+ D + + A ++ H SE AK R K +LLTHFS
Sbjct: 232 ESNLFICEGTYGSD-LDKDKAIKNKHMTFSEAATIAKEGRCKELLLTHFS 280
>gi|269962941|ref|ZP_06177279.1| hypothetical protein VME_36630 [Vibrio harveyi 1DA3]
gi|269832303|gb|EEZ86424.1| hypothetical protein VME_36630 [Vibrio harveyi 1DA3]
Length = 329
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 39/240 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P E +++ FE ++ + L +L
Sbjct: 62 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---EGIKQWFEATQAFTKLYLPFEL 118
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYV-------IYLLRKKLKKQYIH------ 224
++V + + + H +PS Y +Y KL++ I
Sbjct: 119 HFIEVEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQLNIPRGPIWG 178
Query: 225 --LKGKQIEKLKKSGVE--ITDIILSP-EVAFTGDTTSEFMLNPRNADAL--RAKILITE 277
++G +E ++ + T + P +V GD P D+L A +L+ E
Sbjct: 179 ELVRGNDVEYQGQTLMSKAFTKLAHPPRKVIICGDND-----KPETLDSLIEGAHLLVHE 233
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQ 329
+T+ E E A + GH + S++ A+ + +++LTHFS RY IE +RQ
Sbjct: 234 STY--SEAMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQFSPEAEVSIEQVRQ 291
>gi|149199049|ref|ZP_01876089.1| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Lentisphaera araneosa HTCC2155]
gi|149137838|gb|EDM26251.1| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Lentisphaera araneosa HTCC2155]
Length = 352
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 29/228 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT--IFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DH GL + SRGL + IF P IKE ++ + ++ S N+
Sbjct: 73 NKIFITHMHGDHCYGLFGLLTSRGLMSGGEEAVHIFGPKGIKEMIKTVLKL--SYVNLSA 130
Query: 175 NLDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVI------------YLLRKKLKKQ 221
L D G+ +E ++ +V + H +PS GYV+ +R +K
Sbjct: 131 PLTFTEFDEAGDLFE-DDEFIVSNVRLSHDVPSWGYVVKEKDRPGSFDSAKAIRDGIKPG 189
Query: 222 YIHLKGKQIEKLK-KSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALR-AKIL 274
I+ K K E + + G E+ E VA G L DAL+ A ++
Sbjct: 190 PIYSKLKNAEMVTLEDGREVNGADYVGETQKGRVALIGGDNDRPQL---FGDALKGAAVM 246
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
I EAT ++ M+ + H+ + E A+ + K ++LTHFS R+
Sbjct: 247 IHEATHTEEAMAGLSFRSR-HSTAKRVAEVAEENQVKNLVLTHFSPRF 293
>gi|387929638|ref|ZP_10132315.1| ribonuclease Z [Bacillus methanolicus PB1]
gi|387586456|gb|EIJ78780.1| ribonuclease Z [Bacillus methanolicus PB1]
Length = 339
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTI-FVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + + + P +KE V + ++ ++ L
Sbjct: 88 IFITHLHGDHIYGLPGLLSSRSFQGGETEVVLYGPKGLKEYVYISLSVSQTF--LKYPLK 145
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V ++ G +E + V H IPS GY I LL KL K Y
Sbjct: 146 IVEIEEGVVFE-DDQFTVETRLLDHGIPSYGYRIIEKDRPGTLLADKLIKAGIKPGPVYK 204
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K + L V E D + P+ V+ GDT + R+AD +L+
Sbjct: 205 KIKNGESVVLDDGTVLEAADFLGPPQKGRVVSILGDTRVCENAVQLARDAD-----LLVH 259
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EATF E + A ++ H+ + E A K + LTH SSRY+ +D + V
Sbjct: 260 EATFSKGEERM--AYEYFHSTTRQAAETAVKANVKKLCLTHISSRYNRDDWLELV 312
>gi|145591595|ref|YP_001153597.1| ribonuclease Z [Pyrobaculum arsenaticum DSM 13514]
gi|166991501|sp|A4WKM8.1|RNZ_PYRAR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145283363|gb|ABP50945.1| RNAse Z [Pyrobaculum arsenaticum DSM 13514]
Length = 287
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLF 163
F IG P+ V +TH H DH+ GLP V + K + P S + +L
Sbjct: 48 FQIGVAPS---SLTLVAVTHMHEDHVLGLPGLVITAKFLGGKV-KLLGPRSAHGILSRL- 102
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKK 220
+DV + Y+ + VR + H + + G+++ + LKK
Sbjct: 103 ----------------GVDVADGYD-GGRLRVRCVEVCHTVDACGWLLEWDVGYKLDLKK 145
Query: 221 QYIHLKGKQIEKLKKSGVEITDIILSPE------------VAFTGDTTSEFMLNPRNADA 268
K + ++ VE+ ++ PE + +TGDT PR
Sbjct: 146 VEGLPKWALTKLIRGEEVEVGGRVIRPEEVADPAHKRYRRLLYTGDTGP----CPRMLKT 201
Query: 269 L-RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ +LI EATF DD + A + GH+ +++ +E AK +R ++LTH S+RY
Sbjct: 202 VGEVDVLIHEATFADD-VDPNKAHEEGHSTVADAVEAAKALRAGVLVLTHISARY 255
>gi|260550918|ref|ZP_05825124.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|424054982|ref|ZP_17792505.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425741939|ref|ZP_18860069.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|445430788|ref|ZP_21438547.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
gi|260406045|gb|EEW99531.1| ribonuclease Z [Acinetobacter sp. RUH2624]
gi|407438907|gb|EKF45449.1| ribonuclease Z [Acinetobacter nosocomialis Ab22222]
gi|425489674|gb|EKU55977.1| putative ribonuclease Z [Acinetobacter baumannii WC-487]
gi|444760416|gb|ELW84866.1| putative ribonuclease Z [Acinetobacter baumannii OIFC021]
Length = 318
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV + ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 111 LPYSLQFIDVNDAIQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDIQALTQLGV 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L ADA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNQQVHAIIGGDNDQPELL----ADACKD 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA
Sbjct: 226 AQLLIHESTYLQTVLD-KIGKGPMHSSAKMVAEFAEQQSLGNLILTHFSPRHQDKSGQQA 284
Query: 331 V 331
+
Sbjct: 285 I 285
>gi|331683945|ref|ZP_08384541.1| ribonuclease Z [Escherichia coli H299]
gi|432617372|ref|ZP_19853486.1| ribonuclease Z [Escherichia coli KTE75]
gi|450190833|ref|ZP_21890994.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
gi|331078897|gb|EGI50099.1| ribonuclease Z [Escherichia coli H299]
gi|431153792|gb|ELE54687.1| ribonuclease Z [Escherichia coli KTE75]
gi|449320141|gb|EMD10178.1| RNase BN, tRNA processing enzyme [Escherichia coli SEPT362]
Length = 305
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 112/254 (44%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE ++ +R V + H + GY I K L Q + G +
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P NA AK +
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCNAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P+TE
Sbjct: 287 CRS-----IFPVTE 295
>gi|334136583|ref|ZP_08510044.1| ribonuclease Z [Paenibacillus sp. HGF7]
gi|333605916|gb|EGL17269.1| ribonuclease Z [Paenibacillus sp. HGF7]
Length = 311
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIH 166
R P + + +F+TH H DHI GLP ++SR P TI+ P IK V+ ++
Sbjct: 48 RSPVKLSKSEKLFVTHLHGDHIFGLPGLLSSRSYQGGDTPFTIYGPKGIKAYVDMSLQLS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIH 224
+ + EL + + + G +E V H I GY I L KL+++ +H
Sbjct: 108 QVHLDYELVIREIPSEGGVVFEDET-FRVEAAPLEHRIECFGYRIVEKDLPGKLQQEKLH 166
Query: 225 ------------LKGKQIEKLKKSGVEI--TDI----ILSPEVAFTGDTTSEFMLNPRNA 266
LK Q KL + G E+ +D I +A GDT P
Sbjct: 167 ELGITAGPLYGRLKKGQTVKL-EDGRELRGSDFVGPSIKGRTIAILGDT------KPCGN 219
Query: 267 DALRAK---ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
AL A+ +L+ EATF + + A H T + A + A+++TH SSRY
Sbjct: 220 SALLAEGADVLVHEATFGAEREDLAAAYDHSTT--EQAARTAAEVGVGALIMTHISSRYQ 277
Query: 324 IE 325
E
Sbjct: 278 GE 279
>gi|336395640|ref|ZP_08577039.1| beta-lactamase superfamily hydrolase [Lactobacillus farciminis KCTC
3681]
Length = 308
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 39/249 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD+G I + + FITH H DHI GLP ++SR P I+ P
Sbjct: 36 FDVGEATQHQILKTTIKPRKITKIFITHLHGDHIFGLPGLLSSRANQGGNTPLEIYGPVG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY 212
IK+ VE ++ S +L + +++ + E+ ND V K H + GY +
Sbjct: 96 IKQYVETSLKVTGS----KLGYQIKYIELKDGGEIFNDKTFTVYAGKLKHRVTCFGYRVV 151
Query: 213 -------LLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
LL KL +I LK ++ L V + P+ V
Sbjct: 152 EKPRVGELLVDKLATYHIPNGPIFGQLKAGKVVTLDDGTVLNGQDFIGPDKPSKIVTIIS 211
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT ++ + D A +++ E+TF +DE + A + H+ ++ + AK K +
Sbjct: 212 DTRYTPEIDKLSQD---ADVIVHESTFSNDEKKL--AYNYFHSTATQAAQVAKRSHAKGL 266
Query: 314 LLTHFSSRY 322
+LTH S+RY
Sbjct: 267 ILTHISARY 275
>gi|229086713|ref|ZP_04218880.1| Ribonuclease Z [Bacillus cereus Rock3-44]
gi|228696587|gb|EEL49405.1| Ribonuclease Z [Bacillus cereus Rock3-44]
Length = 307
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 38/240 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N V + H I GY I LL +KL ++ +
Sbjct: 117 IVEITEEGIVFE-DNQFSVETKRLSHGIECFGYRIVEKDIQGQLLVEKLLEEGVKPGPIF 175
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITE 277
LK + +L+ V + + P + GDT N A A +L+ E
Sbjct: 176 KRLKDGETVELEDGRVLCGNDFIGPPQKGRIITILGDTR---YCEASNQLAQDADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA----VLLTHFSSRYHIEDIRQAVLK 333
ATF ++ ++ H + E A I +A ++LTH SSRY D+ + +LK
Sbjct: 233 ATFAAED------ERQAHDYFHSTTEQAARIAVQANVKRLILTHISSRYQ-GDMYKELLK 285
>gi|410672002|ref|YP_006924373.1| ribonuclease Z [Methanolobus psychrophilus R15]
gi|409171130|gb|AFV25005.1| ribonuclease Z [Methanolobus psychrophilus R15]
Length = 305
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 33/226 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DHI G+P + + + P P V + I +LG +L ++
Sbjct: 57 IFITHFHADHILGIPGLIQTMSFHGRTEPLRIYGP---HHVHEFARILSALGYYKLRFEI 113
Query: 179 VALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQYIHLK---GKQI 230
A+D+ G+ + R+ + +T H +PS GY + + + + + I L G
Sbjct: 114 DAVDLEPGDIIK-RDGYSIHAIRTQHSVPSIGYALIEDERIGRFNRYKAIELGVPPGPLF 172
Query: 231 EKLKKS-GVEITD-IILSPEV----------AFTGDT--TSEFMLNPRNADALRAKILIT 276
KL K VEI II S EV ++GDT + R AD +LI
Sbjct: 173 SKLHKGETVEINGKIITSQEVVGDPRPGRKIVYSGDTRPCQSILEASRGAD-----LLIH 227
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++T +D+ E A++ H+ E AK ++LTH SSRY
Sbjct: 228 DSTLANDQQ--EWAKESMHSTAEEAALLAKEANVSKLILTHISSRY 271
>gi|366086046|ref|ZP_09452531.1| ribonuclease Z [Lactobacillus zeae KCTC 3804]
Length = 319
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 102/247 (41%), Gaps = 35/247 (14%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTDPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
I++ V ++ +S ++ L V L T V + H I S G+ +
Sbjct: 96 IEDFVRTSLKVSQS--HLSYALKFVLLRHPGTVFEDQTFKVSFDRLDHRITSFGFRVEEK 153
Query: 212 ----YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
LL K++ Y LK GKQ+ + D I + V GDT
Sbjct: 154 PHPGELLIDKVRAAKIPSGPVYAELKAGKQVTLPDGRTFDGHDFIGPAQPGRIVTIFGDT 213
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
P A A +L+ E+TF DE + A+Q+ H+ + E AK +LL
Sbjct: 214 RKCSRALPLAAG---ADVLVHESTFGPDESQL--AKQYYHSTNIQAAELAKRAGVGKLLL 268
Query: 316 THFSSRY 322
H S+RY
Sbjct: 269 NHISARY 275
>gi|448457241|ref|ZP_21595736.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
gi|445810822|gb|EMA60837.1| ribonuclease Z [Halorubrum lipolyticum DSM 21995]
Length = 310
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQN-------FVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + ++ VF++H H DH+ G+P V + G + + P TI PP
Sbjct: 35 FDCGEGTQRGMMRHGTGFGITHVFVSHLHGDHVLGIPGLVQTLGFNDREEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+D+ L +H + + + + GE + VR F+T H SQGYV+
Sbjct: 95 ADDLRDL--VHAVGHDPAFRIRIDEVSPGEVALDADGYEVRAFETTHRTKSQGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K + + + G+ +E S V+ ++ P + +T DT
Sbjct: 153 RPGRFDRPKAEALGVPVGPKFGRLHAGESVEADDGSVVDPGQVVGPPRPGRKFVYTADT- 211
Query: 257 SEFMLNPRNADALRAKILIT---EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A +ATF DD + A+ H+ E A+ K +
Sbjct: 212 -----RPREGTVAAAADADLLVHDATFADDME--DRARDTAHSTGREAGSVAERANAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>gi|229552154|ref|ZP_04440879.1| ribonuclease Z [Lactobacillus rhamnosus LMS2-1]
gi|258539568|ref|YP_003174067.1| ribonuclease Z [Lactobacillus rhamnosus Lc 705]
gi|385835218|ref|YP_005872992.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 8530]
gi|229314456|gb|EEN80429.1| ribonuclease Z [Lactobacillus rhamnosus LMS2-1]
gi|257151244|emb|CAR90216.1| Ribonuclease Z [Lactobacillus rhamnosus Lc 705]
gi|355394709|gb|AER64139.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 8530]
Length = 319
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 45/252 (17%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR +P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTEPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
I++ V+ ++ +S + + L V D +T+++ D + H I S G+
Sbjct: 96 IEDFVKTSLKVSQSHLSYAIKFVLLRHPGVIFD-DQTFKVSFD------RLDHRITSFGF 148
Query: 210 VI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VA 250
+ LL K++ Y LK GK + + D I S + VA
Sbjct: 149 RVEEKPHPGELLIDKVRAAKIPAGPVYASLKAGKTVTLPDGRTFDGHDFIGSAQPGRTVA 208
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
GDT M A A +L+ E+TF DE + A+Q+ H+ + E AK
Sbjct: 209 IFGDTR---MCRRALPLAAGADVLVHESTFGPDESQL--AKQYYHSTNLQAAELAKRAGV 263
Query: 311 KAVLLTHFSSRY 322
+LL H S+RY
Sbjct: 264 GRLLLNHISARY 275
>gi|212638820|ref|YP_002315340.1| ribonuclease Z [Anoxybacillus flavithermus WK1]
gi|254808603|sp|B7GHJ4.1|RNZ_ANOFW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|212560300|gb|ACJ33355.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Anoxybacillus flavithermus WK1]
Length = 312
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P ++ P I+ VE + + EL ++
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGETPLFVYGPAGIRSFVETALAVSGTRLKYELYIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
G +E IV H +PS G+ I LL +L+ Y
Sbjct: 119 --EFTEGVIFEDEQFIVTAKLLDHG-LPSYGFRIVEKDLPGTLLVDELRALGVKPGPIYQ 175
Query: 224 HLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITEA 278
+K ++ L V ++P +A GDT A +L+ EA
Sbjct: 176 QIKRGEVVTLDDGTVIDGRKFVAPPKKGRMIAIMGDTR---YCEASVELAEGVDVLVHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
TF +E + A+ + H+ + E AK R K ++LTH SSRY E Q V
Sbjct: 233 TFSANEAHL--ARDYYHSTTVQAAEVAKRARAKQLILTHISSRYQGEMCDQLV 283
>gi|443631671|ref|ZP_21115851.1| ribonuclease Z [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347786|gb|ELS61843.1| ribonuclease Z [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 307
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 105/247 (42%), Gaps = 35/247 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQ--------Y 222
LV ++ E +D +V H + + GY + L+ L K+ Y
Sbjct: 115 LVIKEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADLLKEMNIPPGPVY 174
Query: 223 IHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITE 277
+K + KL+ + + L P V F+GDT L D +L+ E
Sbjct: 175 QKIKKGETVKLEDGRIINGNDFLEPPKKGRAVVFSGDTRVSDKLKELARD---CDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF ++ + + H T + + AK K ++LTH S+RY + A L+LQ K
Sbjct: 232 ATFAKEDRKLAYDYFHSTTEQAAV--TAKEAGAKQLILTHISARYQGD----ASLELQ-K 284
Query: 338 VSAKVVP 344
+A V P
Sbjct: 285 EAADVFP 291
>gi|422845501|ref|ZP_16892211.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325684269|gb|EGD26442.1| ribonuclease Z [Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 309
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + A+ + H+ ++ E A + + LTH S+RY
Sbjct: 236 DASEGKL--ARDYYHSTCTQAAETAAACQVGHLYLTHVSARY 275
>gi|283768806|ref|ZP_06341717.1| putative ribonuclease Z [Bulleidia extructa W1219]
gi|283104592|gb|EFC05965.1| putative ribonuclease Z [Bulleidia extructa W1219]
Length = 303
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
Q + + +TH H DH GLP + + N L+P I+ P +KE ++ + + R +
Sbjct: 53 QIDTIILTHYHADHTAGLPGLLLTMAKNNRLEPIRIYGPKGLKEVIQGVTLLARF---IP 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL----KKQYIHLKGKQ 229
++ + +D + + ++ V+ F H + GY L RK K + ++L +
Sbjct: 110 FEVNCIEIDGHSVFSLE-ELQVQAFPLIHSVECLGYRFDLKRKPKFLVEKAKALNLPVQY 168
Query: 230 IEKLKKS------GVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILI 275
KL+K G EI +L E + + DT TS + AL+A +LI
Sbjct: 169 WSKLQKGETVLFEGKEILPSAVLGNERKGISLVYATDTRPTSSLV-----RQALQADLLI 223
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
E + D E IE+AQ + H + E + A+ K + LTH+S I + +LK
Sbjct: 224 AEGMYGDVE-KIENAQMNKHMMMQEACDIAQKCGVKDLWLTHYSPSMPFPSIYEKMLK 280
>gi|407718055|ref|YP_006795460.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
gi|407241811|gb|AFT81461.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc carnosum JB16]
Length = 321
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 34/248 (13%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGANKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVI 211
++E VE + + L+ +V +++ E + V K H I S G+ +
Sbjct: 96 KGVEEFVETSLRVSET----RLSYPVVYVEIQEGVIFEDSTFKVIAAKMRHRITSWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL +KL+ + G +LK V ++D F G+ F
Sbjct: 152 EEKDHPGELLVEKLRDLNVP-SGPVFGQLKAGKRVTLSDGRTLDGADFIGEAQKGRVVTF 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+L+ R D A +A +L+ E+T+ E + A+ H H+ A+ ++
Sbjct: 211 ILDTRPNDNIATLAYQADVLVHESTYGASEEEAKMAKAHAHSTSVNAANVARRAHVDKLI 270
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 271 LTHLSARY 278
>gi|313123510|ref|YP_004033769.1| ribonuclease z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280073|gb|ADQ60792.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 309
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKSG-VEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEHVELADGTVLNGKDFLGPAKKGRIVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + A+ + H+ ++ E A + + LTH S+RY
Sbjct: 236 DASEGKL--ARDYYHSTCTQAAETAAACQVGHLYLTHVSARY 275
>gi|385806031|ref|YP_005842429.1| ribonuclease Z [Fervidicoccus fontis Kam940]
gi|383795894|gb|AFH42977.1| ribonuclease Z [Fervidicoccus fontis Kam940]
Length = 261
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 48/259 (18%)
Query: 104 FDIGRCPTRAIQQN--------FVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
DIG R++ +N + I+H H DHI GLP + + + + + P
Sbjct: 36 LDIGEGSQRSLIKNGIGVNRIDHILISHLHGDHIFGLPGIIQTMSMEGRERKLSIISP-- 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-IPSQGYVIYLL 214
E +EK+ + + +L + + + I V PFKT H I S GY+I
Sbjct: 94 -EGIEKILNAASQITSYQLEFPIEIIKPEGEISLEQYISVYPFKTCHTNIESFGYIIKAF 152
Query: 215 -RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRA 271
K KK+ L A+TGDT E + + AD
Sbjct: 153 GTGKEKKERFSL------------------------AYTGDTAPCEELIEKIKGAD---- 184
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+LI ++TF D +E A GH+ S + AK K+++L H S+RY+ D + +
Sbjct: 185 -VLIHDSTF--DSSMVEKAIAFGHSTSSIAAKVAKMAGVKSLILFHISNRYN--DKSEMI 239
Query: 332 LKLQSKVSAKVVPLTEGFK 350
L K+ +G K
Sbjct: 240 LDNALKIFKNTFLAEDGMK 258
>gi|199598729|ref|ZP_03212143.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus rhamnosus HN001]
gi|258508359|ref|YP_003171110.1| ribonuclease Z [Lactobacillus rhamnosus GG]
gi|385828028|ref|YP_005865800.1| hydrolase [Lactobacillus rhamnosus GG]
gi|418070578|ref|ZP_12707853.1| ribonuclease Z [Lactobacillus rhamnosus R0011]
gi|421768996|ref|ZP_16205705.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP2]
gi|421771259|ref|ZP_16207919.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP3]
gi|423078100|ref|ZP_17066787.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 21052]
gi|199590417|gb|EDY98509.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Lactobacillus rhamnosus HN001]
gi|257148286|emb|CAR87259.1| Ribonuclease Z [Lactobacillus rhamnosus GG]
gi|259649673|dbj|BAI41835.1| hydrolase [Lactobacillus rhamnosus GG]
gi|357539998|gb|EHJ24015.1| ribonuclease Z [Lactobacillus rhamnosus R0011]
gi|357552480|gb|EHJ34253.1| ribonuclease Z [Lactobacillus rhamnosus ATCC 21052]
gi|411185392|gb|EKS52520.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP2]
gi|411185845|gb|EKS52971.1| Ribonuclease Z [Lactobacillus rhamnosus LRHMDP3]
Length = 319
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 45/252 (17%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPS 154
FD+G I Q VFITH H DHI GLP ++ASR +P TI+ PP
Sbjct: 36 FDVGEGTQHQILQTTIKPRKIAKVFITHLHGDHIFGLPGFLASRANQGGTEPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGY 209
I++ V+ ++ +S + + L V D +T+++ D + H I S G+
Sbjct: 96 IEDFVKTSLKVSQSHLSYAIKFVLLRHPGVIFD-DQTFKVSFD------RLDHRITSFGF 148
Query: 210 VI-------YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSPE----VA 250
+ LL K++ Y LK GK + + D I S + VA
Sbjct: 149 RVEEKPHPGELLIDKVRAAKIPAGPVYASLKAGKTVTLPDGRTFDGHDFIGSAQPGRTVA 208
Query: 251 FTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
GDT M A A +L+ E+TF DE + A+Q+ H+ + E AK
Sbjct: 209 IFGDTR---MCRRALPLAAGADVLVHESTFGPDESQL--AKQYYHSTNLQAAELAKRAGV 263
Query: 311 KAVLLTHFSSRY 322
+LL H S+RY
Sbjct: 264 GRLLLNHISARY 275
>gi|385815521|ref|YP_005851912.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
gi|325125558|gb|ADY84888.1| putative metallo-beta-lactamase superfamily [Lactobacillus
delbrueckii subsp. bulgaricus 2038]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ I LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRIVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + A+ + H+ ++ E A + LTH S+RY
Sbjct: 236 DASEGKL--ARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|336251333|ref|YP_004595043.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
gi|334737389|gb|AEG99764.1| ribonuclease Z [Enterobacter aerogenes KCTC 2190]
Length = 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 93/230 (40%), Gaps = 30/230 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P IKE +E + S + L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTVYGPKGIKEFIETALRLSGSWTDYPLT 117
Query: 176 LDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI------------YLLRKKLKKQ- 221
+ ++VG D V + H + GY I L+ ++
Sbjct: 118 I----IEVGPGLVFDEDGYRVSAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVRPGP 173
Query: 222 -YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILI 275
+ LK Q +L+ V L P +A GDT P+ + R ++
Sbjct: 174 LFHQLKLGQRVELEDGRVIDGSRYLGPSTPGKTLAIFGDTAP----CPQALEMARGADVM 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 230 VHETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|422416499|ref|ZP_16493456.1| ribonuclease Z [Listeria innocua FSL J1-023]
gi|313623068|gb|EFR93349.1| ribonuclease Z [Listeria innocua FSL J1-023]
Length = 306
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 36/228 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ V EM +V H + S GY I L +KLK + G
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AGPVF 174
Query: 231 EKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAKIL 274
+KLK ++ + I P+ V+ GD T SE L AL A IL
Sbjct: 175 QKLKNGEIVTLADGRVIDGKNYIGEPQKGKIVSIFGDTRETVSELEL------ALNADIL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D+ + A ++ H+ + AK K ++LTH SSRY
Sbjct: 229 VHEATFEGDKAKM--AGEYMHSTTLQAATLAKAANVKKLILTHISSRY 274
>gi|315231971|ref|YP_004072407.1| ribonuclease Z [Thermococcus barophilus MP]
gi|315184999|gb|ADT85184.1| ribonuclease Z [Thermococcus barophilus MP]
Length = 307
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 42/241 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N KP I+ P E ++ + G + +
Sbjct: 57 IFITHFHGDHYLGLMSLIQTMTLWNREKPLHIYGPKYTFEFIQNYLKS----GFFAPSFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------GK 228
+ ++GE D + FK H IP+ GYV ++K K+ +L+ G
Sbjct: 113 IHVHELGEARLKFGDYEIWSFKVEHGIPALGYV---FKEKDKRGNFNLEKIRELGLKPGP 169
Query: 229 QIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKI 273
+++L+ G +EI + E V +TGDT P L RA +
Sbjct: 170 WMKELELKGKIEINGRTIYLEDVTGERRRGVKVVYTGDT------EPCKRIELFSERADL 223
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
LI EAT+L E E + + H+ +SE E AK + K + L H + RY ++ Q +
Sbjct: 224 LIYEATYLTGE---ERGESY-HSTVSEACEVAKKAKVKLLALFHRAPRYKYDEYLQKAEQ 279
Query: 334 L 334
L
Sbjct: 280 L 280
>gi|296269111|ref|YP_003651743.1| beta-lactamase domain-containing protein [Thermobispora bispora DSM
43833]
gi|296091898|gb|ADG87850.1| beta-lactamase domain protein [Thermobispora bispora DSM 43833]
Length = 327
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 22/226 (9%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
++ +TH H DH GLP + N+ P P+ E+ + + + E+ +
Sbjct: 57 TWICVTHFHGDHCLGLPGVIQRIARDNVPHPVQVAYPAAGEEYWRRLRHASAFADTEVIV 116
Query: 177 DL-VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
V+ D + RP H IPS GY I +L +L ++ IH G
Sbjct: 117 PRPVSGDEARLPAGPLTLTARPLS--HPIPSYGYRIEEPPGRTMLPAELARRGIH--GPM 172
Query: 230 IEKLKKSG---VEITDIILSPEVAFTGDTTS-EFMLNPRNADALRA-----KILITEATF 280
I +L++ G V ++ E + S F+++ R DA A +L+ EATF
Sbjct: 173 IGELQRKGSITVPDGSVVTLEECSVPRPGQSFAFVMDTRLCDAAFALADGVDLLVVEATF 232
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
L E S+ A +GH ++ A + ++LTHFS RY + +
Sbjct: 233 LSAEASL--AAHYGHLTAAQAGRLAAACGVRRLVLTHFSERYPVAE 276
>gi|407452811|ref|YP_006724536.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
gi|403313795|gb|AFR36636.1| hypothetical protein B739_2054 [Riemerella anatipestifer RA-CH-1]
Length = 304
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIH 166
R + + N +FI+H H DH GLP +AS L + P I+ P I+E +E +F I
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYLLRKKLKKQYIH 224
+ E+ L+ ++ ++ D V F +H I G YL R+K K+++++
Sbjct: 107 ETQRGFEVIYH--ELEGNQSVKIYEDHKVEVFTIPLNHRIYCNG---YLFREKPKERHLN 161
Query: 225 L----KGKQIEKLK----KSGVEIT---DIILSPEVAFT---GDTTSEFMLNPRNADAL- 269
+ K +IE K G + T +L EV T + F + R +++
Sbjct: 162 MEEISKYPEIETCDYHNLKKGKDFTLSDGFVLKNEVLTTPPQPSVSYAFCSDTRYLESIV 221
Query: 270 ----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L EATFL D E A GHT E A+ K ++L HFS+RY
Sbjct: 222 PIIKGVDVLYHEATFLHDLK--EMADYTGHTTALEAATIAQKAGVKKLILGHFSNRY 276
>gi|219852567|ref|YP_002466999.1| ribonuclease Z [Methanosphaerula palustris E1-9c]
gi|219546826|gb|ACL17276.1| ribonuclease Z [Methanosphaerula palustris E1-9c]
Length = 313
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 39/243 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ +FITH H DH G+ V + +P TI+ P + E E + R +G ++
Sbjct: 58 DAIFITHWHADHFLGVFGLVQTLSFMGRAEPLTIYGPEWVHEFAEDV----RHMGKTQMR 113
Query: 176 LDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI------------YLLRKKLKKQY 222
L + +V + D VR FKT H I S GYV+ +R +K
Sbjct: 114 FVLKSEEVLPGMVVPFDGYTVRAFKTRHGITSVGYVLEEDPRPGRFDREEAIRLGVKPGP 173
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRA 271
+ + ++ E++ + V+ + I+ PE V +TGDT ++ + + A
Sbjct: 174 LFGRLQRGEEVLVT-VDGQERIVRPEQVVGVERPGRKVIYTGDTRP--VIPAVSEIGMDA 230
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIED 326
+L+ +AT+ D +++ A++ H E + A+ IR + + L H SSRY H+ D
Sbjct: 231 DLLVHDATYNDTDLA--RAKEVFHATAGEAADVARAIRARTLALIHISSRYTASTDHLAD 288
Query: 327 IRQ 329
+Q
Sbjct: 289 AKQ 291
>gi|336054229|ref|YP_004562516.1| ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
gi|333957606|gb|AEG40414.1| Ribonuclease Z [Lactobacillus kefiranofaciens ZW3]
Length = 312
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPTG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ V+ ++ R+ + + V L D V + H IPS G+ +
Sbjct: 96 IEQFVKTALKVSRT--KISYPIKYVVLSEPGLICEDKDFRVYTDQLEHRIPSFGFRVVES 153
Query: 213 -----LLRKKLKKQYIHLKGKQIEKLKKS-GVEITD-------IILSPE-------VAFT 252
LL KL K ++ G + KLK+ V + D L PE + +
Sbjct: 154 SHSGELLMDKLAKYHVP-NGPLLGKLKRGEQVALADGTVLNGKDFLGPEKPGRIVTIIYD 212
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN-- 310
+T +NAD +L+ E+TF +E + H H S +E AK R
Sbjct: 213 TRSTPSIARLAKNAD-----VLVHESTFAGNEAKMAHNYYH-----STAVEAAKVARKDN 262
Query: 311 -KAVLLTHFSSRY 322
K + L H S+R+
Sbjct: 263 VKKLCLNHISARH 275
>gi|383319182|ref|YP_005380023.1| ribonuclease Z [Methanocella conradii HZ254]
gi|379320552|gb|AFC99504.1| ribonuclease Z [Methanocella conradii HZ254]
Length = 304
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 41/251 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIH 166
R T + + +FITH H DH G+P + + G +P I+ P ++E +I
Sbjct: 46 RARTGFMDVDSIFITHFHADHTLGMPGLIQTMGFQGRSRPLHIYGPRFVRE----YCDIM 101
Query: 167 RSLGNVELNLDLVA--LDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQ 221
+LG ++ D+VA L G+ E R + F+T H +PS GY + ++ K +
Sbjct: 102 NTLGYLKPGFDVVAHELKHGDVVE-RKGYRIEAFRTFHSVPSLGYALREDKRPGRFNKPR 160
Query: 222 YIHL---KGKQIEKLKKSG--------VEITDIILSPE----VAFTGDT--TSEFMLNPR 264
+ L +G KL++ V+ +D++ P + +TGDT + F+
Sbjct: 161 ALELGVPEGPLFGKLQRGEDVAVDGRIVKSSDVVGPPRPGRLIVYTGDTVPSHAFLSILE 220
Query: 265 NADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH- 323
AD + ++EATF D+ H+ ++ A + + LTH SSRY
Sbjct: 221 GAD-----LWVSEATFADEAADKAAETL--HSTAGDVARLAAMAGVQKLALTHISSRYSE 273
Query: 324 -----IEDIRQ 329
+ED R+
Sbjct: 274 DATPLLEDARK 284
>gi|344213174|ref|YP_004797494.1| metallo-beta-lactamase-like/ribonuclease Z [Haloarcula hispanica
ATCC 33960]
gi|343784529|gb|AEM58506.1| metallo-beta-lactamase-like / ribonuclease Z [Haloarcula hispanica
ATCC 33960]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DH+ G+P + + +N + I + P
Sbjct: 33 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWD-FNERERAIAIHTPAG 91
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 92 TRGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEIRAIETEHRCASVGYVLDED 149
Query: 212 ----YLLRKKLKKQYIHLKGKQIEKL-KKSGVEITDIILSPEV-----------AFTGDT 255
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 150 DRKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHDGETIQPEAVVGPARPGRRFVYTGDT 209
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T + +AD +L+ +ATF +D E A+ H+ E + A+ +
Sbjct: 210 LPTESVIEASEDAD-----LLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTL 262
Query: 314 LLTHFSSRY 322
LTH S+RY
Sbjct: 263 ALTHISTRY 271
>gi|306814617|ref|ZP_07448779.1| ribonuclease Z [Escherichia coli NC101]
gi|432382009|ref|ZP_19624952.1| ribonuclease Z [Escherichia coli KTE15]
gi|432387821|ref|ZP_19630710.1| ribonuclease Z [Escherichia coli KTE16]
gi|432514571|ref|ZP_19751795.1| ribonuclease Z [Escherichia coli KTE224]
gi|432612079|ref|ZP_19848241.1| ribonuclease Z [Escherichia coli KTE72]
gi|432646841|ref|ZP_19882631.1| ribonuclease Z [Escherichia coli KTE86]
gi|432656423|ref|ZP_19892127.1| ribonuclease Z [Escherichia coli KTE93]
gi|432699700|ref|ZP_19934854.1| ribonuclease Z [Escherichia coli KTE169]
gi|432746312|ref|ZP_19980978.1| ribonuclease Z [Escherichia coli KTE43]
gi|432905528|ref|ZP_20114395.1| ribonuclease Z [Escherichia coli KTE194]
gi|432938621|ref|ZP_20136899.1| ribonuclease Z [Escherichia coli KTE183]
gi|432972472|ref|ZP_20161339.1| ribonuclease Z [Escherichia coli KTE207]
gi|432986028|ref|ZP_20174751.1| ribonuclease Z [Escherichia coli KTE215]
gi|433039269|ref|ZP_20226868.1| ribonuclease Z [Escherichia coli KTE113]
gi|433083227|ref|ZP_20269684.1| ribonuclease Z [Escherichia coli KTE133]
gi|433101815|ref|ZP_20287901.1| ribonuclease Z [Escherichia coli KTE145]
gi|433144859|ref|ZP_20330003.1| ribonuclease Z [Escherichia coli KTE168]
gi|433189053|ref|ZP_20373151.1| ribonuclease Z [Escherichia coli KTE88]
gi|305852011|gb|EFM52463.1| ribonuclease Z [Escherichia coli NC101]
gi|430906469|gb|ELC28069.1| ribonuclease Z [Escherichia coli KTE16]
gi|430907484|gb|ELC28982.1| ribonuclease Z [Escherichia coli KTE15]
gi|431041967|gb|ELD52462.1| ribonuclease Z [Escherichia coli KTE224]
gi|431148253|gb|ELE49544.1| ribonuclease Z [Escherichia coli KTE72]
gi|431180878|gb|ELE80765.1| ribonuclease Z [Escherichia coli KTE86]
gi|431190893|gb|ELE90279.1| ribonuclease Z [Escherichia coli KTE93]
gi|431243449|gb|ELF37836.1| ribonuclease Z [Escherichia coli KTE169]
gi|431291351|gb|ELF81864.1| ribonuclease Z [Escherichia coli KTE43]
gi|431432763|gb|ELH14440.1| ribonuclease Z [Escherichia coli KTE194]
gi|431463356|gb|ELH43549.1| ribonuclease Z [Escherichia coli KTE183]
gi|431481974|gb|ELH61681.1| ribonuclease Z [Escherichia coli KTE207]
gi|431500265|gb|ELH79281.1| ribonuclease Z [Escherichia coli KTE215]
gi|431551369|gb|ELI25355.1| ribonuclease Z [Escherichia coli KTE113]
gi|431602119|gb|ELI71628.1| ribonuclease Z [Escherichia coli KTE133]
gi|431619409|gb|ELI88333.1| ribonuclease Z [Escherichia coli KTE145]
gi|431661554|gb|ELJ28367.1| ribonuclease Z [Escherichia coli KTE168]
gi|431705759|gb|ELJ70349.1| ribonuclease Z [Escherichia coli KTE88]
Length = 305
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE ++ +R V + H + GY I K L Q + G +
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|354489391|ref|XP_003506846.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Cricetulus
griseus]
gi|344242888|gb|EGV98991.1| Zinc phosphodiesterase ELAC protein 1 [Cricetulus griseus]
Length = 362
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 107/267 (40%), Gaps = 70/267 (26%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+FITH H DH GLP + + S + +P I+ P +++ + + E L + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTRQPIEIYGPVGLRDFIWRTME----LSHTE 113
Query: 174 LNLDLVA------------------------------------LDVGE-TYEMRND--IV 194
L V LD E +Y + +D V
Sbjct: 114 LVFPYVVHEIVPTADQCPVEELKECSHVNDADSSSKGQGRTILLDTEENSYCLVDDEQFV 173
Query: 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKK-------SGVEIT 241
V+ F+ H IPS G+ + ++ K LK G KLK +GV I+
Sbjct: 174 VKAFRLFHRIPSFGFSVVEKKRAGKLNAQKLKDLGVPPGPAYGKLKNGISVVLDNGVTIS 233
Query: 242 --DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
D++ P ++ GD S + + A +LI EAT D +M + A++HGH
Sbjct: 234 PQDVLKKPMVGRKICILGDC-SGVVGDSGVKLCFEADLLIHEATLDDSQM--DKAKEHGH 290
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRY 322
+ AK R K ++LTHFS RY
Sbjct: 291 STPQMAAAFAKLCRAKRLVLTHFSQRY 317
>gi|347522679|ref|YP_004780249.1| ribonuclease Z [Pyrolobus fumarii 1A]
gi|343459561|gb|AEM37997.1| ribonuclease Z [Pyrolobus fumarii 1A]
Length = 304
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 34/237 (14%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ V +TH H DH GL + S + + + P + +E + + R G+V
Sbjct: 53 LRVKVVAVTHMHGDHFLGLAGLLQSMTMGGRREELFVIGP--RGLLEYIEIVERLTGHVR 110
Query: 174 LNLDLVALDV--GETYEMRNDIVVRPFKTHHV-IPSQGYVIYLL----RKKLKK-QYIHL 225
+ D+V +V G YE N +V++ F+ H + + GYV R KL+K + + L
Sbjct: 111 -SFDIVFREVEEGVVYE-DNRVVIKAFRVCHGHVAAYGYVFEEKPRPGRVKLEKLKELGL 168
Query: 226 K-GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT--TSEFMLNPRNADALR 270
K G + ++K+ V + +++ PE V +TGDT + R AD
Sbjct: 169 KPGPYLSRVKRGESVIVNGVLVRPEDVLEEPRPGVRVVYTGDTRPCKTVIDVARGAD--- 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+LI E+TFL+ E S A + GH+ E A K + LTHFS+RY D+
Sbjct: 226 --LLIHESTFLESEAS--EAHEKGHSTALEAGLVAAKAGVKCLALTHFSARYRELDV 278
>gi|225010713|ref|ZP_03701182.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
gi|225005084|gb|EEG43037.1| ribonuclease Z [Flavobacteria bacterium MS024-3C]
Length = 301
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 18/222 (8%)
Query: 117 NFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GLP VA+ R L + P I+ P IKE V L ++ S N L+
Sbjct: 54 NHIFISHLHGDHFFGLPGLVATFRLLGRVNPLHIYGPKGIKEAVTLLLKLGDSWTNYPLH 113
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--LLRKKLKKQYIHLKG------ 227
++ E + V H + + G++ + +KL+ Q + G
Sbjct: 114 FHELSSQAPEVVFEDKKVTVTTIPLDHRVYTNGFLFREKVGSRKLEAQAVEAHGIDSCYF 173
Query: 228 KQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRN-------ADALRAKILITEATF 280
+ I+ K + + +II + +++ T + A +L E+TF
Sbjct: 174 QNIKDGKDAPNKAGEIIPNAQLSSDPKPTKSYAFCSDTAYFPKIIAQIKEVTVLYHESTF 233
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ E + A + H+ S+ + A+ K+++L H+S+RY
Sbjct: 234 LESESDL--ATKTKHSTASQAAKIAESAGVKSLILGHYSTRY 273
>gi|68073799|ref|XP_678814.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499400|emb|CAI00194.1| conserved hypothetical protein [Plasmodium berghei]
Length = 862
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DH G+ ++ R + +L PP I +P ++K + E+ + + +
Sbjct: 640 IFISHAHADHHVGIYYFLYIRKMIFPHLDPPLILIPKTLKNWMNLFNELFLDIE-MRIIY 698
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+ L++ E N + + FK +H+ S G +K
Sbjct: 699 NENDLEIKEIISEDNLLTLHLFKVNHIKESYG------------------------IKIE 734
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
G +I I+ S + D +F A ILI EATF DDE+ +E A H+
Sbjct: 735 GKDIGSIVYSADTR-PCDNVKKF--------AKDCNILIHEATF-DDELLVE-AINKKHS 783
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRY 322
+ E ++ + + K ++LTHFS RY
Sbjct: 784 TIHEAMQISLDVNCKTLILTHFSQRY 809
>gi|422882523|ref|ZP_16928979.1| ribonuclease Z [Streptococcus sanguinis SK355]
gi|332359391|gb|EGJ37211.1| ribonuclease Z [Streptococcus sanguinis SK355]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 57/248 (22%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+D D +G+ E N V K H I GY + ++K L+ +K
Sbjct: 117 IDFHEFDENSLGKILET-NKFTVYAEKLDHTIFCVGYRV--MQKDLEGTL------DADK 167
Query: 233 LKKSGVEI----------TDIIL-----------------SPEVAFTGDTTSEFMLNPRN 265
L+ +GV DIIL +A GDT +
Sbjct: 168 LRAAGVPFGPLFGKVKNGQDIILEDGTKIIAADYISAPRPGKTIAILGDTR-------KT 220
Query: 266 ADALR----AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
A ++R A +L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R
Sbjct: 221 AASVRLAVAADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISAR 278
Query: 322 YHIEDIRQ 329
+ +DI Q
Sbjct: 279 FLAKDISQ 286
>gi|300812694|ref|ZP_07093103.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496321|gb|EFK31434.1| ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKA--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRVVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + A+ + H+ ++ E A + LTH S+RY
Sbjct: 236 DASEGKL--ARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|410291590|gb|JAA24395.1| elaC homolog 1 [Pan troglodytes]
Length = 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 56 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 115
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 116 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 175
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 176 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 235
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + L A +LI EAT D+ ++ A++HGH+
Sbjct: 236 VLKKPIVGRKICILGDC-SGVVGDGGVKLCLEADLLIHEATL--DDAQMDKAKEHGHSTP 292
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 293 QMAATFAKLCRAKRLVLTHFSQRY 316
>gi|417090898|ref|ZP_11956158.1| ribonuclease Z [Streptococcus suis R61]
gi|353533394|gb|EHC03051.1| ribonuclease Z [Streptococcus suis R61]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + + T I+ P I+ V ++ + ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQSSEEQTDIDIYGPVGIRSFVLASLKVSGTRLPYRIH 118
Query: 176 LDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLK----GK 228
+D VG+ E + V K H IP GY + L L + + G
Sbjct: 119 FHEFDVDTVGQVLET-DKFTVFAEKLDHTIPCVGYRVIQKDLEGTLDAEALRAAGVPFGP 177
Query: 229 QIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
K+K + G EI +D I P V GDT + A+ A +L+
Sbjct: 178 LFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTRKCY---ASVRLAVNADVLV 234
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
EAT+ + I A++HGH+ E + AK K +LL H S R+ +DI Q
Sbjct: 235 HEATYGKGDEKI--ARKHGHSTNMEAAQVAKDAGAKQLLLNHISPRFLSKDISQ 286
>gi|308069322|ref|YP_003870927.1| ribonuclease Z [Paenibacillus polymyxa E681]
gi|305858601|gb|ADM70389.1| Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3 endonuclease)
[Paenibacillus polymyxa E681]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 30/247 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIH 166
R P + + +FITH H DH+ GLP ++SR P T++ PP I+E +E I
Sbjct: 48 RSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTTPLTVYGPPGIQEYIELSLGIS 107
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKK 220
+S N +L+ + G V H I S GY + L ++L +
Sbjct: 108 QSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSYGYRVVEMDKPGKLNQELLE 164
Query: 221 QYIHLKGKQIEKLKKS-GVEI--------TDIILSPE----VAFTGDTTSEFMLNPRNAD 267
+Y G KLK+ VE+ D++ SP+ + GDT P
Sbjct: 165 RYGIKPGPVYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPNTVV 220
Query: 268 -ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
A A +++ EATFL + + A ++ H+ + E AK +++THFSSRY ++
Sbjct: 221 LAQDATVVVHEATFLHE--LADTAYEYHHSTALQAAEAAKAAGAGQLIMTHFSSRYKDQE 278
Query: 327 IRQAVLK 333
Q +L+
Sbjct: 279 QLQPLLE 285
>gi|422870679|ref|ZP_16917172.1| ribonuclease Z [Streptococcus sanguinis SK1087]
gi|328946463|gb|EGG40603.1| ribonuclease Z [Streptococcus sanguinis SK1087]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T IF P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 KGKQIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAK 272
G K+K + G++I D I +P +A GDT + A+ A
Sbjct: 176 -GPLFGKVKNGQDIVLEDGIKIIAADYISAPRPGKTIAILGDTRKT---SASVRLAVAAD 231
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 232 VLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|366158559|ref|ZP_09458421.1| ribonuclease Z [Escherichia sp. TW09308]
gi|432372947|ref|ZP_19615986.1| ribonuclease Z [Escherichia coli KTE11]
gi|430895369|gb|ELC17632.1| ribonuclease Z [Escherichia coli KTE11]
Length = 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 40/230 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH---- 224
++ + GE + +R V + H + GY I L + LK +
Sbjct: 118 IIEISAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNARALKDAGVQPGPL 174
Query: 225 ----LKGKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
KGK + + D + +P +A GDT P +A AK I
Sbjct: 175 FQDLKKGKTVTLEDGRQINGADYLDAPTPGKSIAIFGDT------GPCDAAIDLAKGVDI 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++ EAT +M++E A GH+ + A+ +++TH SSRY
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRY 275
>gi|325958402|ref|YP_004289868.1| Ribonuclease Z [Methanobacterium sp. AL-21]
gi|325329834|gb|ADZ08896.1| Ribonuclease Z [Methanobacterium sp. AL-21]
Length = 302
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 42/249 (16%)
Query: 104 FDIG----RCPTRA----IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R TRA ++ + +F+TH H DHI G+P + S + I+ PP
Sbjct: 33 FDCGEGTQRQMTRARLSPMKIDRIFVTHFHGDHILGIPGLIQSMAFRGRRDTLEIYGPPG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
I+E L + LG L+ ++ ++ + T +D + H + + Y I
Sbjct: 93 IQE----LLNSMKKLGYFALSFNIAVHEIKDGTVLEEDDFKISAQLMKHSVENYAYCIEE 148
Query: 214 LR--KKLKKQYIHLK---GKQIEKLKKSG--VEITDIILSPE-----------VAFTGDT 255
R K +K++ + L G KL +SG V+I + I+ PE + ++GDT
Sbjct: 149 KRDPKFIKEKALKLGIKPGPAYGKL-QSGLPVKIGNKIIKPEEVLGEKRRGRKLVYSGDT 207
Query: 256 TS--EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
+ E + ++AD +LI E+TF + E A + GH+ + AK K++
Sbjct: 208 LACEEMVGFSKDAD-----VLIHESTF--NNSHKEKAFETGHSTAEMAADIAKKAGVKSL 260
Query: 314 LLTHFSSRY 322
+LTH S+RY
Sbjct: 261 VLTHISTRY 269
>gi|114673177|ref|XP_001155672.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Pan
troglodytes]
gi|332849952|ref|XP_003315964.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Pan
troglodytes]
gi|397513963|ref|XP_003827274.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Pan paniscus]
gi|410223320|gb|JAA08879.1| elaC homolog 1 [Pan troglodytes]
gi|410255136|gb|JAA15535.1| elaC homolog 1 [Pan troglodytes]
gi|410332787|gb|JAA35340.1| elaC homolog 1 [Pan troglodytes]
Length = 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + L A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCLEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|421651875|ref|ZP_16092242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425750040|ref|ZP_18868007.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|445460325|ref|ZP_21448234.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
gi|408507808|gb|EKK09502.1| putative ribonuclease Z [Acinetobacter baumannii OIFC0162]
gi|425487442|gb|EKU53800.1| putative ribonuclease Z [Acinetobacter baumannii WC-348]
gi|444773560|gb|ELW97656.1| putative ribonuclease Z [Acinetobacter baumannii OIFC047]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 30/237 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+++
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAIIE 287
>gi|425075650|ref|ZP_18478753.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086286|ref|ZP_18489379.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405594050|gb|EKB67473.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605201|gb|EKB78267.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 28/239 (11%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQYDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ V + D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
T L+ M+ E A GH+ + AK ++ THFSSRY E + + + Q
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAEGCLRMLAECQ 288
>gi|423395556|ref|ZP_17372757.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
gi|401654967|gb|EJS72506.1| ribonuclease Z [Bacillus cereus BAG2X1-1]
Length = 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 101/237 (42%), Gaps = 39/237 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLAMGVKPGPVFK 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK G+ +E + + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTMLNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EATF +DE + A + H+ + A K ++LTH SSRY E ++
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGETYKE 282
>gi|227879077|ref|ZP_03996966.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256843066|ref|ZP_05548554.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256850282|ref|ZP_05555711.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|293381292|ref|ZP_06627295.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|312977251|ref|ZP_07788999.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|423318856|ref|ZP_17296733.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|423321567|ref|ZP_17299438.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
gi|227861318|gb|EEJ68948.1| ribonuclease Z [Lactobacillus crispatus JV-V01]
gi|256614486|gb|EEU19687.1| ribonuclease Z [Lactobacillus crispatus 125-2-CHN]
gi|256712919|gb|EEU27911.1| ribonuclease Z [Lactobacillus crispatus MV-1A-US]
gi|290922108|gb|EFD99107.1| ribonuclease Z [Lactobacillus crispatus 214-1]
gi|310895682|gb|EFQ44748.1| ribonuclease Z [Lactobacillus crispatus CTV-05]
gi|405591842|gb|EKB65306.1| ribonuclease Z [Lactobacillus crispatus FB049-03]
gi|405594256|gb|EKB67673.1| ribonuclease Z [Lactobacillus crispatus FB077-07]
Length = 312
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I+E V ++ R+ +++
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPITIYGPSGIEEFVRTALKVSRT----KISYS 114
Query: 178 LVALDVGETYEMRNDIVVRPF--KTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
+ +++ ++ + D R + + H IPS G+ + LL KL QY G
Sbjct: 115 IRFVELAKSGLICEDKGFRVYTEQLDHRIPSFGFRVVEASHPGELLIDKL-AQYNVPNGP 173
Query: 229 QIEKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADAL-----RAKILITEA 278
+ KLK V + D + F G T + + R+ ++ A +L+ E+
Sbjct: 174 LLGKLKNGEKVTLADGTVLDGKNFLGPTKPGRIVTVIYDTRSTPSIARLAKDADVLVHES 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN---KAVLLTHFSSRY 322
TF DE + H H S +E AK R K + L H S+RY
Sbjct: 234 TFAGDEQKLAHDYYH-----STSVEAAKIARKDNVKLLCLNHISARY 275
>gi|426253832|ref|XP_004020595.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Ovis
aries]
gi|426253834|ref|XP_004020596.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Ovis
aries]
Length = 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI-HRSL--- 169
+FITH H DH GLP + + S + +P I+ P +++ + + ++ H L
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPAGLRDFICRTMDLSHTELVFP 117
Query: 170 -------------------GNVELNLD----------LVALDVGET-YEMRND--IVVRP 197
+V++N + LD E+ Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPTEELKESVQVNKTDSPPQEGEGRTIMLDSEESSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVDDGGVKLCFEADLLIHEATLDDTQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|262043315|ref|ZP_06016444.1| ribonuclease Z [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259039339|gb|EEW40481.1| ribonuclease Z [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 288
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 97
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 98 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLNAAQLIADGVPPGPL 156
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 157 FHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 212
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 213 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 260
>gi|157817712|ref|NP_001100876.1| zinc phosphodiesterase ELAC protein 1 [Rattus norvegicus]
gi|149064598|gb|EDM14801.1| elaC homolog 1 (E. coli) (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 362
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 62/263 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--------- 164
+FITH H DH GLP + + S + + +P I+ P +++ + + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVSRQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 165 --IHRSLGNVE----------LNLD-----------LVALDVGE-TYEMRND--IVVRPF 198
+H + + +D + LD E +Y + +D VV+ F
Sbjct: 118 YVVHELVPTADQCPVEELRESAQMDEADSSPKGQGRTILLDAEENSYCLVDDEQFVVKAF 177
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKK-------SGVEIT--DI 243
+ H IPS G+ + ++ K L+ G KLK +GV I+ D+
Sbjct: 178 RLFHRIPSFGFSVVEKKRTGKLSAQKLRDLGVPPGPAYGKLKNGISVVLDNGVTISPQDV 237
Query: 244 ILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
+ P +V GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 LKKPMVGRKVCILGDC-SGVVGDGGVKLCFEADLLIHEATLDDSQM--DKAKEHGHSTPQ 294
Query: 300 EIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 MAATFAKLCRAKRLVLTHFSQRY 317
>gi|384176001|ref|YP_005557386.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595225|gb|AEP91412.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 307
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
L ++ E +D +V H + + GY + L+ + K+ G
Sbjct: 115 LAVQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+K+KK G +T D + P+ V F+GDT L D +L+
Sbjct: 175 QKIKK-GETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
EATF ++ + + H T + + AK R K ++LTH S+RY + A L+LQ
Sbjct: 231 EATFAKEDRKLAYDYYHSTTEQAAV--TAKEARAKQLILTHISARYQGD----ASLELQ- 283
Query: 337 KVSAKVVP 344
K + V P
Sbjct: 284 KEAVDVFP 291
>gi|152971203|ref|YP_001336312.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|166991105|sp|A6TBW1.1|RBN_KLEP7 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|150956052|gb|ABR78082.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 306
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVELADGRVIDGSRYLGPSTPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|422829667|ref|ZP_16877832.1| ribonuclease Z [Escherichia coli B093]
gi|371608651|gb|EHN97203.1| ribonuclease Z [Escherichia coli B093]
Length = 305
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKGKQ---- 229
+V + GE ++ +R V + H + GY I K L Q + G Q
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVQPGPL 174
Query: 230 IEKLK-------KSGVEIT--DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
++LK + G +I D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVNV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|327405262|ref|YP_004346100.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
gi|327320770|gb|AEA45262.1| Ribonuclease Z [Fluviicola taffensis DSM 16823]
Length = 303
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 32/229 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + I+H H DH GL +++S L K TI+ P E++E++ + +G L
Sbjct: 56 NHILISHLHGDHFFGLVGFLSSMHLLGRDKGLTIYGP----EELEQIIRLQLEVGGARLG 111
Query: 176 --LDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLKGKQ 229
L+ VAL+ E + D I + F H IP+ G++I +KL + G
Sbjct: 112 FELNFVALNGKENRLLFEDKIIEIWTFPLSHRIPTNGFLIKEKPRDRKLNAELFEEAGLS 171
Query: 230 ---IEKLKKSGVEITDIILSPEVAFTGDTT------------SEFMLNPRNADALR-AKI 273
I KLK+ G+++ + S EV + + T S+ + + R ++ +
Sbjct: 172 LTLIPKLKQ-GIDVE--LDSGEVIYADEYTYPAKPSRSYGYCSDTIYDERIVAYVKHVNL 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L EATFLDD++ + A+Q H+ S+ AK +LL H S+RY
Sbjct: 229 LYHEATFLDDKL--DRAKQTFHSTASQAASIAKQAEVGKLLLGHLSARY 275
>gi|55379160|ref|YP_137010.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|448638251|ref|ZP_21676224.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|448655150|ref|ZP_21682002.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
gi|74552598|sp|Q5UZJ9.1|RNZ_HALMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|55231885|gb|AAV47304.1| metallo-beta-lactamase-like [Haloarcula marismortui ATCC 43049]
gi|445763500|gb|EMA14687.1| ribonuclease Z [Haloarcula sinaiiensis ATCC 33800]
gi|445765599|gb|EMA16737.1| ribonuclease Z [Haloarcula californiae ATCC 33799]
Length = 311
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 38/248 (15%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + I P
Sbjct: 35 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRSEYEIRAIETAHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKL-KKSGVEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEEEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPARPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T + +AD +L+ +ATF +D E A+ H+ E + A+ +
Sbjct: 213 PTESVIEASEDAD-----LLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTLA 265
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 266 LTHISTRY 273
>gi|422855272|ref|ZP_16901930.1| ribonuclease Z [Streptococcus sanguinis SK1]
gi|327463249|gb|EGF09570.1| ribonuclease Z [Streptococcus sanguinis SK1]
Length = 309
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T IF P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT + ++ R A A A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDT-RKTSVSVRLAVA--ADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKCLLLNHISARFLAKDISQ 286
>gi|375308862|ref|ZP_09774144.1| ribonuclease Z [Paenibacillus sp. Aloe-11]
gi|375079074|gb|EHS57300.1| ribonuclease Z [Paenibacillus sp. Aloe-11]
Length = 309
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 115/270 (42%), Gaps = 44/270 (16%)
Query: 105 DIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
+I R P + + +FITH H DH+ GLP ++SR P T++ PP +K+ +E
Sbjct: 45 EILRSPLKLSRLEKIFITHLHGDHLFGLPGLLSSRAYQGGTAPLTVYGPPGLKQYIELSL 104
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------------ 211
I +S N +L+ + G V H I S GY I
Sbjct: 105 GISQSRINYQLH---IVEHTGGVLFDDGQFRVESALLDHRIDSFGYRIVEMDKPGKLNQE 161
Query: 212 YLLRKKLKKQYIHLKGKQIEKLKKSGVEI---TDIILSPE----VAFTGDTTSEFMLNPR 264
L R +K I+ K K+ E ++ G I D++ SP+ + GDT P
Sbjct: 162 LLERYGIKPGPIYGKLKRGESVEVEGGVILHPQDVLGSPKKGRIITILGDTRP----CPN 217
Query: 265 NAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
A A +++ EATFL + + A ++ H+ + E AK ++LTHFSSRY
Sbjct: 218 TVVLAQDATVVVHEATFLHE--LADTAYEYHHSTALQAAEAAKAANAGQLILTHFSSRY- 274
Query: 324 IEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353
K ++ PL E KS++
Sbjct: 275 -------------KDQEQLEPLLEEAKSIF 291
>gi|331658352|ref|ZP_08359314.1| ribonuclease Z [Escherichia coli TA206]
gi|331056600|gb|EGI28609.1| ribonuclease Z [Escherichia coli TA206]
Length = 305
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|398811313|ref|ZP_10570114.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
gi|398080853|gb|EJL71646.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Variovorax sp. CF313]
Length = 319
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 23/232 (9%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V ITH H DH GLP +AS G+ P + P V + FE R L ++ L ++
Sbjct: 60 VCITHVHGDHCYGLPGLLASAGMNKRTKPLKLIAPL---PVWEWFEATRQLTDLHLPYEV 116
Query: 179 VALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI----- 230
+D+ YE + R H V PS Y + + ++++ + L+ +
Sbjct: 117 EHVDLENQALVYEAPGVRIERHLLRHRV-PSHAYRVQVETRRVRLKADALRAAGLPPGPA 175
Query: 231 EKLKKSGVEI---TDIILSPEVAFTGDTTSEFMLNPRNA------DALR-AKILITEATF 280
+ ++G ++ D++ S + T T+ +L NA DA R A++L+ EATF
Sbjct: 176 WRALQTGEDVPFNGDVLRSADYTETQVDTAVAVLGGDNAEPALLRDACRGAQLLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
D + + H+ + E A+ + ++LTHFS+R+ E+ A++
Sbjct: 236 TQDALD-KVGPGPMHSSARMLAEFAQAVEVPNLVLTHFSARHQNEEGMAALM 286
>gi|330003569|ref|ZP_08304684.1| ribonuclease Z [Klebsiella sp. MS 92-3]
gi|328536909|gb|EGF63208.1| ribonuclease Z [Klebsiella sp. MS 92-3]
Length = 288
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 40 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 97
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 98 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGPL 156
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 157 FHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 212
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 213 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 260
>gi|313884203|ref|ZP_07817969.1| ribonuclease Z [Eremococcus coleocola ACS-139-V-Col8]
gi|312620650|gb|EFR32073.1| ribonuclease Z [Eremococcus coleocola ACS-139-V-Col8]
Length = 311
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 35/246 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR + P TI+ P IK+ V ++ +S N+ L
Sbjct: 59 IFITHMHGDHIFGLPGFLSSRSFQGGEEPVTIYGPQGIKDYVLMCLKLSKS--NLGYPLI 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------Y 222
L D G ++ + +H I S G+ I LL LK Q Y
Sbjct: 117 FEELSDQGGKLDLGHGWQAEYLPLNHGILSFGFRIKEPDTPGQLLVDDLKAQGIPAGPIY 176
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPEVA-----FTGDT--TSEFMLNPRNADALRAKILI 275
LK + +L+ + ++P A + GDT + ++ ++AD +LI
Sbjct: 177 GRLKAGETVQLEDGRLLDGKDFIAPAQAGHVLTYIGDTRPNANNLILAKDAD-----VLI 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIR---QAVL 332
E T D +S + A Q+ H+ + AK K V L H SSRY D++ QA
Sbjct: 232 YEGTH-DGSLS-QMANQYYHSTSDQGATLAKEAGVKQVYLNHISSRYLSRDVQVMEQAAQ 289
Query: 333 KLQSKV 338
K+ K+
Sbjct: 290 KIFPKL 295
>gi|238895792|ref|YP_002920528.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|378979891|ref|YP_005228032.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|402779704|ref|YP_006635250.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|449061120|ref|ZP_21738565.1| ribonuclease Z [Klebsiella pneumoniae hvKP1]
gi|238548110|dbj|BAH64461.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|364519302|gb|AEW62430.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae HS11286]
gi|402540640|gb|AFQ64789.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|448873369|gb|EMB08466.1| ribonuclease Z [Klebsiella pneumoniae hvKP1]
Length = 306
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|375088368|ref|ZP_09734708.1| ribonuclease Z [Dolosigranulum pigrum ATCC 51524]
gi|374562406|gb|EHR33736.1| ribonuclease Z [Dolosigranulum pigrum ATCC 51524]
Length = 312
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 100/237 (42%), Gaps = 37/237 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N VFITH H DHI GLP +++SR + P TI+ P IK V L + S V
Sbjct: 57 NKVFITHMHGDHIYGLPGFLSSRSFQGGEDPLTIYGPKGIKHFV--LSTLKLSHTRVSYR 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L V G+ + VR + +H + + G+ I L ++L + G
Sbjct: 115 LKFVEFTDGDVLMDTDYCTVRVERLNHGVDAYGFRIEEKDKIGSLDAERLVAAGVPF-GP 173
Query: 229 QIEKLKKSGVEITD--------IILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+LK+ V I D + P+ V GDT T + AD +
Sbjct: 174 LFGRLKQGEVVILDDGREIDGKDYIGPDIKGRTVTILGDTKPTESIYRLAKGAD-----V 228
Query: 274 LITEATFL--DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIR 328
L+ EATF D E+ A+ + H+ + AK K +LL H SSRY D++
Sbjct: 229 LVHEATFAHPDKEL----ARSYNHSTNVQAAHQAKSAGVKTLLLNHISSRYLYHDVK 281
>gi|288934267|ref|YP_003438326.1| ribonuclease Z [Klebsiella variicola At-22]
gi|288888996|gb|ADC57314.1| ribonuclease Z [Klebsiella variicola At-22]
Length = 306
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 99/250 (39%), Gaps = 36/250 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R P + N +FITH H DH+ GLP + SR + N P T++ P
Sbjct: 37 FDCGEGTQHQFLRTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKG 96
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+KE VE + S + L ++ + G ++ V + H + GY I
Sbjct: 97 LKEFVETALRLSGSW--TDYPLTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIEQH 153
Query: 212 ---------YLLRKKLKKQ--YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT 255
L+ ++ + LK Q +L+ V L P +A GDT
Sbjct: 154 DKPGTLDAAQLIADGVRPGPLFHQLKLGQRVELEDGRVIDGSRYLGPATPGKTLAIFGDT 213
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
P+ + R ++ T L+ M+ E A GH+ + AK ++
Sbjct: 214 AP----CPQALEMARGADVMVHETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIA 268
Query: 316 THFSSRYHIE 325
THFSSRY E
Sbjct: 269 THFSSRYDAE 278
>gi|157144795|ref|YP_001452114.1| ribonuclease Z [Citrobacter koseri ATCC BAA-895]
gi|166991097|sp|A8ADW5.1|RBN_CITK8 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|157082000|gb|ABV11678.1| hypothetical protein CKO_00522 [Citrobacter koseri ATCC BAA-895]
Length = 305
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 38/243 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + N +P TI+ P I+E E + S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGNAQPLTIYGPKGIREFTETALRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + G E+ ND + V F H + GY I L LK
Sbjct: 118 IVEITAG---EILNDGLRKVTAFALEHPLECYGYRIEEHDKPGALDASALKAAGVKPGPL 174
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK + L V L+P VA GDT P + AK +
Sbjct: 175 FQDLKAGKTVTLNDGRVINGADFLAPATPGKSVAIFGDTA------PCASAITLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M E A GH+ + + A +++TH SSRY ++ + +
Sbjct: 229 MVHEAT-LDTSME-EKANSRGHSSTRQAAQLAHNAEVGQLIITHVSSRYDDRGCQRLLAE 286
Query: 334 LQS 336
Q+
Sbjct: 287 CQA 289
>gi|397686140|ref|YP_006523459.1| ribonuclease Z [Pseudomonas stutzeri DSM 10701]
gi|395807696|gb|AFN77101.1| ribonuclease Z [Pseudomonas stutzeri DSM 10701]
Length = 320
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ + P I P I++ + F + R+ EL
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMARRQEPLDIIAPEGIEDWLRATFAMSRTGLPFELRFH 117
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
+L T ++R V+ H +PS GY R K L+ I +
Sbjct: 118 AAESLGQWRTPQVR----VKVAALSHRVPSYGYSFTEARPDPKLAIDRLERDNIPRGPLW 173
Query: 237 GVEITDIILSPE-VAFTGDTTSEFMLNPRN-------------ADALR-AKILITEATFL 281
G + E +T +F PR AD R A++L+ EAT+
Sbjct: 174 GQLARGFDVEHEGRRLRSETYLDFGRRPRRIVIGGDNDRPELLADTCRAAQVLVHEATYT 233
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIR 328
+ Q GH+ +++ A+ + ++LTHFS+RY IED+R
Sbjct: 234 QPAATAARG-QFGHSTAAQVAAFAENVGLPNLVLTHFSARYQAKADGGFSIEDVR 287
>gi|339495064|ref|YP_004715357.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338802436|gb|AEJ06268.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 335
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 100/242 (41%), Gaps = 32/242 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS G+ K P TI P I+ V + +S + EL+
Sbjct: 58 ICITHVHGDHCYGLPGLLASAGMMGRKAPLTIIAPQGIETWVRATLSMSQSWLSYELDFH 117
Query: 178 LV-ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
V LD + MR + + H +P GY R + L+ + +
Sbjct: 118 AVETLDEWRSPNMR----IEATELSHRVPCYGYSFSEARPDPRLDIDRLEHDGVPRGPLW 173
Query: 237 G--VEITDIILSPEVAFTGDTTSEFMLNPRN-------------ADALR-AKILITEATF 280
G DI V + D S F +PR A+ R A++L+ EAT+
Sbjct: 174 GQLARGFDIEHEGRVLRSHDYLS-FSRSPRRIVVGGDNDRPDLLAETCRDAQLLVHEATY 232
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQAVL 332
+ ++ + GH+ + + A+ + ++LTHFS+RY IED+R
Sbjct: 233 T-EAVANDARNDFGHSTAATVARFAQAVGLPNLVLTHFSARYQKHVGRGHSIEDLRAEAA 291
Query: 333 KL 334
L
Sbjct: 292 AL 293
>gi|169632990|ref|YP_001706726.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii SDF]
gi|169151782|emb|CAP00601.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii]
Length = 318
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 30/237 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGIPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+++
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAIIE 287
>gi|110642477|ref|YP_670207.1| ribonuclease Z [Escherichia coli 536]
gi|191170037|ref|ZP_03031591.1| ribonuclease Z [Escherichia coli F11]
gi|300981142|ref|ZP_07175386.1| ribonuclease Z [Escherichia coli MS 200-1]
gi|422375528|ref|ZP_16455793.1| ribonuclease Z [Escherichia coli MS 60-1]
gi|432471636|ref|ZP_19713682.1| ribonuclease Z [Escherichia coli KTE206]
gi|432714048|ref|ZP_19949088.1| ribonuclease Z [Escherichia coli KTE8]
gi|433078448|ref|ZP_20264985.1| ribonuclease Z [Escherichia coli KTE131]
gi|123049023|sp|Q0TFH3.1|RBN_ECOL5 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|110344069|gb|ABG70306.1| protein ElaC [Escherichia coli 536]
gi|190909553|gb|EDV69138.1| ribonuclease Z [Escherichia coli F11]
gi|300307663|gb|EFJ62183.1| ribonuclease Z [Escherichia coli MS 200-1]
gi|324013131|gb|EGB82350.1| ribonuclease Z [Escherichia coli MS 60-1]
gi|430998025|gb|ELD14274.1| ribonuclease Z [Escherichia coli KTE206]
gi|431256825|gb|ELF49760.1| ribonuclease Z [Escherichia coli KTE8]
gi|431596281|gb|ELI66236.1| ribonuclease Z [Escherichia coli KTE131]
Length = 305
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|345862528|ref|ZP_08814748.1| ribonuclease Z [Desulfosporosinus sp. OT]
gi|344324388|gb|EGW35946.1| ribonuclease Z [Desulfosporosinus sp. OT]
Length = 303
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 28/232 (12%)
Query: 110 PTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLF 163
P R F V TH H DHI GLP + + G KP T+ PP +K+ VE L
Sbjct: 43 PLRMAAWGFKTIDAVLFTHYHGDHIAGLPGLLLTIGNSGREKPLTLLGPPGLKKVVEGLT 102
Query: 164 EIHRSLGNVELNLDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLRKKL---- 218
I L LDL+ L E+ E D+ ++ H +P Y + L R+
Sbjct: 103 VIAPLL---PFELDLIELSDMESAETHIGDLNIKSIPVEHTLPCLSYCLELKRQGRFNVE 159
Query: 219 KKQYIHLKGKQIEKLKKSGVEIT--DIILSPEVAFTGDTTSE----FMLNPRNADAL--- 269
+ + + + +L+K GV I D I+SP++ G+T + + R + L
Sbjct: 160 RAKQLGIPVSYWSRLQK-GVTIILEDQIVSPQMVL-GETRKGIKVCYCTDTRPTEGLIEF 217
Query: 270 --RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ + I E + DE + A Q H SE A+ K + LTH+S
Sbjct: 218 IEGSDLFICEGMY-GDEDDLSKAIQKKHMMFSEAGLLAQQASVKELWLTHYS 268
>gi|422413515|ref|ZP_16490474.1| ribonuclease Z [Listeria innocua FSL S4-378]
gi|313618091|gb|EFR90200.1| ribonuclease Z [Listeria innocua FSL S4-378]
Length = 306
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 97/229 (42%), Gaps = 38/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ V EM +V H + S GY I +K K+ ++ EKLK G
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIV---EKDKQGALN-----AEKLKADG 167
Query: 238 VEITDI---ILSPEVAFTGD----TTSEFMLNPRNAD-----------------ALRAKI 273
VE + + + E+ D ++ P+N A+ A I
Sbjct: 168 VEAGPVFQKLKNGEIVTLADGRVIDGKNYIGEPQNGKIISIFGDTKETISELELAMNADI 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ EATF D+ + A ++ H+ + AK K ++LTH SSRY
Sbjct: 228 LVHEATFEGDKAKM--AGEYMHSTTLQAANLAKAANVKKLILTHISSRY 274
>gi|323351344|ref|ZP_08087000.1| ribonuclease Z [Streptococcus sanguinis VMC66]
gi|322122568|gb|EFX94279.1| ribonuclease Z [Streptococcus sanguinis VMC66]
Length = 309
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 101/240 (42%), Gaps = 41/240 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T IF P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFREFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR--- 270
G+ I + + D I +P +A GDT + A ++R
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTR-------KTAASVRLAV 228
Query: 271 -AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
A +L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 229 AADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|392541945|ref|ZP_10289082.1| ribonuclease Z [Pseudoalteromonas piscicida JCM 20779]
Length = 299
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 41/242 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP ++S L + K P + P ++ + V+ F +L V L+ D
Sbjct: 40 ICITHLHGDHCYGLPGLISSMALNSRKAPLKLIAPRAVIQFVQSCF----TLTEVRLSFD 95
Query: 178 LVALDVGETYEMRNDIV------VRPFKTHHVIPSQGYVIY--LLRKKLKKQYIHLKGKQ 229
L+ + + E ND + + H +PS GY + + +KLK + L G
Sbjct: 96 LITIALEEI----NDKLHLECCDIETIALQHRVPSVGYKLTEKCIPRKLKIDKLQLDG-- 149
Query: 230 IEKLKKSGVEITDIILSPEVAFTG-----DTTSEFMLNPRNA----DALRAKIL---ITE 277
SG + +V + G D S + PR A D + +L I E
Sbjct: 150 ----IASGGHYNLLQKGQDVEYQGRLLTSDDYSFYSWQPRVAIICGDNEKPGLLSQMIKE 205
Query: 278 ATFLDDEMSIEHAQQH------GHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
L E + A H GH+ I + A+ + + LTHFS RYH E + Q +
Sbjct: 206 VDLLVHEATFTAADLHKVGFHTGHSDAKRIAQFAQLHQVPMLALTHFSVRYHGEGMLQPL 265
Query: 332 LK 333
++
Sbjct: 266 IE 267
>gi|260554454|ref|ZP_05826675.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410996|gb|EEX04293.1| ribonuclease Z [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452950718|gb|EME56172.1| ribonuclease Z [Acinetobacter baumannii MSP4-16]
Length = 318
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARNNPLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 QFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE +L + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|239616718|ref|YP_002940040.1| hypothetical protein Kole_0311 [Kosmotoga olearia TBF 19.5.1]
gi|239505549|gb|ACR79036.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
Length = 283
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 30/243 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
VFITHGH+DHI GL + +R + + + P +E + N +L
Sbjct: 44 VFITHGHVDHIAGLWGLINTRNNAMGDREKALKINYPKKNRAIEDFLRFITEM-NPKLRY 102
Query: 177 DLVA--LDVGETYEMRNDIVVR----PFKTHHVIP--SQGYVIYLLRKKLKKQYIHLKGK 228
+++ ++ GE +R R PF H S GY + R+KLK ++ HL
Sbjct: 103 EMILNPIEPGEEVYLRTAGNFRRSVIPFPVQHTSGEISYGYHVLEERRKLKPEFSHL--- 159
Query: 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN-PRNADALRAKILITEATFLDDEMSI 287
S EI+D++ F T + +L + +AL ++ T + + I
Sbjct: 160 -------SPQEISDLVKEKGRDFVTQTYKKKILTVSGDCNALPVSVIKGSETLIHECTFI 212
Query: 288 EHAQQHGHTH--LSEIIENAKWIRN-KAVLLTHFSSRY--HIEDIRQAVLKLQSKVSAKV 342
+ G H LSEI++N + + K ++L H SSRY I +R+ KLQ + + K
Sbjct: 213 NGGDRRGQNHAVLSEILDNVREASDIKRLILYHISSRYSSKISVLRK---KLQEEFAEKG 269
Query: 343 VPL 345
+ +
Sbjct: 270 IKI 272
>gi|424780404|ref|ZP_18207277.1| Ribonuclease Z [Catellicoccus marimammalium M35/04/3]
gi|422842806|gb|EKU27253.1| Ribonuclease Z [Catellicoccus marimammalium M35/04/3]
Length = 322
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 103/236 (43%), Gaps = 44/236 (18%)
Query: 117 NFVFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
N +FITH H DHI GLP ++SR G NL I+ P IK+ VE +I S +
Sbjct: 57 NKIFITHLHGDHIFGLPGLLSSRSFQGGDENL---VIYGPKGIKKFVETTLKISES--RL 111
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTH-----HVIPSQGYVIY-------LLRKKLKK 220
+ V LD E ++ I + FK H I S GY I LL K+K
Sbjct: 112 SYKISYVELDAFEG--VKTIIDNKKFKVEVALLDHRIHSFGYRIIEKDLPGELLIDKVKA 169
Query: 221 Q-------YIHLKGKQIEKLKKS-GVEITDIILSPE----VAFTGDT--TSEFMLNPRNA 266
Y LK +I L+ + D I P+ V GDT T + ++A
Sbjct: 170 ANIPQGPVYSQLKKGEIVTLEDGRTFDGKDFIGQPKKGRIVTILGDTRKTPNVEILAKDA 229
Query: 267 DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
D +L+ E+TF DE + A + H+ ++ AK K + LTH S+RY
Sbjct: 230 D-----VLVHESTFGKDEQKL--AANYYHSTSTQAATVAKNANVKRLFLTHISARY 278
>gi|255531764|ref|YP_003092136.1| beta-lactamase domain-containing protein [Pedobacter heparinus DSM
2366]
gi|255344748|gb|ACU04074.1| beta-lactamase domain protein [Pedobacter heparinus DSM 2366]
Length = 303
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLG 170
+A + +FVFI+H H DH GL ++S L +KP IF P ++ E +E F+ ++
Sbjct: 51 KANKIDFVFISHLHGDHYFGLIGLLSSLHLNGRIKPIKIFAPAALAEILELQFKHSETV- 109
Query: 171 NVELNLDLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH-LKG 227
+ ++ VA E+ D+ V +H IP G+ ++ +K+L+K + L+
Sbjct: 110 -IRYPVEFVATQTDAPAEIFENADLKVETIILNHRIPCTGFK-FVQKKRLRKLIVEKLEA 167
Query: 228 KQI----EKLKKSGVEIT----DIILSPEVAFTGDT------TSEFMLNPRNADALR-AK 272
++I L K G ++ ++L+ + D S+ + + ++++
Sbjct: 168 EEIPVDCYPLLKRGADLDLPDGRVLLNADYTTDSDRPKQYCYCSDTLFDETYFESIQGCD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L EATFL EM ++ A Q HT + E AK +L+ HFSSRY
Sbjct: 228 TLYHEATFLH-EM-VDRANQTHHTTALQAAEIAKMTGAAKLLIGHFSSRY 275
>gi|432102915|gb|ELK30345.1| Zinc phosphodiesterase ELAC protein 1 [Myotis davidii]
Length = 363
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-----LKPPTIFVPPSIKEDVEKLFEIHRS----- 168
+FITH H DH GLP + + L + +P I+ P +++ + + E+ +
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSTVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 169 -----------------------LGNV-----ELNLDLVALDVGE-TYEMRND--IVVRP 197
LG E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTTDQCPTEELKEFAHLGRADSSSREGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAAAFAKRCRAKRLVLTHFSQRY 318
>gi|386585807|ref|YP_006082209.1| ribonuclease Z [Streptococcus suis D12]
gi|353737953|gb|AER18961.1| ribonuclease Z [Streptococcus suis D12]
Length = 309
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + + T I+ P I+ V ++ + ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQSSEEQTDIDIYGPVGIRSFVLASLKVSGTRLPYRIH 118
Query: 176 LDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLK----GK 228
+D VG+ E + V K H IP GY + L L + + + G
Sbjct: 119 FHEFDVDTVGQVLET-DKFTVFAEKLDHTIPCVGYRVIQKDLEGTLDAEALCVAGVPFGP 177
Query: 229 QIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
K+K + G EI +D I P V GDT + A+ A +L+
Sbjct: 178 LFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTRK---CHASVRLAVNADVLV 234
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
EAT+ + I A++HGH+ E + AK K +LL H S R+ +DI Q
Sbjct: 235 HEATYGKGDEKI--ARKHGHSTNMEAAQVAKDAGVKQLLLNHISPRFLSKDISQ 286
>gi|299821603|ref|ZP_07053491.1| ribonuclease Z [Listeria grayi DSM 20601]
gi|299817268|gb|EFI84504.1| ribonuclease Z [Listeria grayi DSM 20601]
Length = 343
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 108/245 (44%), Gaps = 42/245 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVE---KLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR KP TI+ P I+E VE +L H S
Sbjct: 98 IFITHMHGDHIFGLPGLLSSRSFQGKEKPITIYGPKGIQEYVESALRLSGTHLSYTIAFE 157
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK------- 220
++ L +T+ + D++ H I S GY I L +KL++
Sbjct: 158 EIEPGLLFDDDTFSVSCDLL------DHGIASYGYRIVQKDKPGALYAEKLQEIGVPPGP 211
Query: 221 --QYIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTT---SEFMLNPRNADALRA 271
Q I KG+ +E ++ +D I + +A GDT + L NAD
Sbjct: 212 IFQAIK-KGESVELEDGRTIDGSDYIGPSQAGKIIAIYGDTRQIPASLELG-ENAD---- 265
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+++ EATF + H H TH + E AK K +++TH S+RY E Q +
Sbjct: 266 -VIVHEATFEAGLEKLAHEYMHSTTH--QAAELAKKTGAKRLIITHISARYDKEGSGQLL 322
Query: 332 LKLQS 336
+ +S
Sbjct: 323 EEARS 327
>gi|424044605|ref|ZP_17782213.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-03]
gi|408887784|gb|EKM26284.1| metallo-beta-lactamase superfamily protein [Vibrio cholerae
HENC-03]
Length = 281
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 39/240 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GLP +AS G+ N K P + P E +++ FE ++ + L +L
Sbjct: 14 ICITHIHGDHCYGLPGLLASAGMNNRKDPLTIIAP---EGIKQWFEATQAFTKLYLPFEL 70
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYV-------IYLLRKKLKKQYIH------ 224
++ + + + H +PS Y +Y KL++ I
Sbjct: 71 HFIEAEQFDSIEIGQFTITATALSHRVPSFAYCFEESTIRMYPDIDKLEQLNIPRGPIWG 130
Query: 225 --LKGKQIEKLKKSGVE--ITDIILSPEVA-FTGDTTSEFMLNPRNADAL--RAKILITE 277
++G +E ++ + T + P A GD + P D+L A +L+ E
Sbjct: 131 ELVRGNDVEYQGQTLMSNAFTKLAHPPRKAIICGDNDT-----PEKLDSLIEGAHLLVHE 185
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQ 329
+T+ E E A + GH + S++ A+ + +++LTHFS RY IE IRQ
Sbjct: 186 STY--SEAMKERAGEVGHAYSSQVASYAQTKQIPSLILTHFSPRYQFSPEAEVSIEQIRQ 243
>gi|408410085|ref|ZP_11181337.1| Ribonuclease Z [Lactobacillus sp. 66c]
gi|409350367|ref|ZP_11233517.1| Ribonuclease Z [Lactobacillus equicursoris CIP 110162]
gi|407875748|emb|CCK83143.1| Ribonuclease Z [Lactobacillus sp. 66c]
gi|407877476|emb|CCK85575.1| Ribonuclease Z [Lactobacillus equicursoris CIP 110162]
Length = 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +A+R ++ P TI+ PP + + V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLATRSFQGDVGPLTIYGPPGLDQFVKTSLRISKT--KLSYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ V K H I S G+ + LL KL QY G +
Sbjct: 117 FVNLEKAGKIVDEKGFKVYTEKLDHRIDSWGFRVVEGDKAGELLMDKL-AQYHVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTG------------DTTSEFMLNPRNADALRAKILITE 277
KLK+ V + D + F G DT S + R AD A +L+ E
Sbjct: 176 GKLKRGEQVALEDGTVLDGHDFLGPAKKGRVVTVIYDTRSTPAIG-RLAD--HADVLVHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
ATF E + A+++ H+ ++ E A+ + + LTH S+RY
Sbjct: 233 ATFDASESKL--AKEYYHSTCTQAAETARAAQVGHLYLTHVSARY 275
>gi|432802488|ref|ZP_20036467.1| ribonuclease Z [Escherichia coli KTE84]
gi|431348277|gb|ELG35135.1| ribonuclease Z [Escherichia coli KTE84]
Length = 305
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDATLELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|293609558|ref|ZP_06691860.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427423300|ref|ZP_18913459.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
gi|292828010|gb|EFF86373.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699945|gb|EKU69543.1| putative ribonuclease Z [Acinetobacter baumannii WC-136]
Length = 325
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 32/242 (13%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ + H +PS + IY+ ++KKL +
Sbjct: 111 LPYSLQFIDVNEATQPQQITDEFIVQAHQLSHRVPSFAFSIYIKSIQKKLDTKALTQLGV 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALRA 271
+ HLK G IE ++ D I GD +L D A
Sbjct: 171 PQGDMWGHLKQGYNIE-FDGQTLKAQDFIKIQNQQVHAIIGGDNDQPELLANACKD---A 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 227 QLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEHQSLSNLILTHFSPRHQDKAGQQAI 285
Query: 332 LK 333
++
Sbjct: 286 IE 287
>gi|229163080|ref|ZP_04291036.1| Ribonuclease Z [Bacillus cereus R309803]
gi|228620486|gb|EEK77356.1| Ribonuclease Z [Bacillus cereus R309803]
Length = 307
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V ++ T N+ V + H I GY I LL KL + +
Sbjct: 117 VVEIEEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLELGVKPGPIFK 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK G+ +E + + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTMLNGKDFIGPPQKGKIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|385813956|ref|YP_005850349.1| Ribonuclease Z [Lactobacillus helveticus H10]
gi|323466675|gb|ADX70362.1| Ribonuclease Z [Lactobacillus helveticus H10]
Length = 312
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 120/278 (43%), Gaps = 54/278 (19%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYI-------HLK-GKQIEKLKKSGVEITDIILSPE---- 248
G+ + LL KL K I LK G+Q+ + + D + + +
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIPNGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGRI 206
Query: 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
V DT S + D A +L+ E+TF DE + H H + + I AK
Sbjct: 207 VTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYHSTSVQAAKI--AKQE 261
Query: 309 RNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLT 346
K + L+H S+RY + KL+S+ + KV P T
Sbjct: 262 NVKKLCLSHISARY----MENKAKKLESQ-AKKVFPNT 294
>gi|417238087|ref|ZP_12035818.1| ribonuclease BN [Escherichia coli 9.0111]
gi|386213865|gb|EII24290.1| ribonuclease BN [Escherichia coli 9.0111]
Length = 311
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D +++P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLVAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|14590979|ref|NP_143054.1| ribonuclease Z [Pyrococcus horikoshii OT3]
gi|41017522|sp|O58883.1|RNZ_PYRHO RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|3257568|dbj|BAA30251.1| 307aa long hypothetical sulfatase [Pyrococcus horikoshii OT3]
Length = 307
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 49/264 (18%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD+G R ++ VFITH H DH GLP + + L+ K P I+ P
Sbjct: 34 FDVGEGTLRQMEIARISPMKIKRVFITHFHGDHYLGLPALIQTMSLWKRKDPLHIYGPEG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
++ L + G + D++ ++ G++ + V F+ H +P+ GYV
Sbjct: 94 SSTFLQNLL----NSGYFAPSFDILVHEISGKSRLKFKEYEVWAFEVSHGVPALGYV--- 146
Query: 214 LRKKLKKQYIHLK---------GKQIEKLKKSG-VEITDIIL-----------SPEVAFT 252
++K K+ +LK G +++L++ +EI I+ +V ++
Sbjct: 147 FKEKDKRGNFNLKKIKELGLEPGPWMKELERQKIIEINGKIVRLLEVTGPKKRGAKVVYS 206
Query: 253 GDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
GDT E + R R +LI EAT++++ E + HT + E E K +
Sbjct: 207 GDTEPCDEVIEFSR-----RGTLLIHEATYVNE----EDRKDSYHTTIEEACEIWKKSKA 257
Query: 311 KAVLLTHFSSRYHIEDIRQAVLKL 334
+ ++L H S RY ++ ++ L +
Sbjct: 258 RKLVLFHRSPRYSFKEYKEKALSI 281
>gi|418460684|ref|ZP_13031772.1| ribonuclease Z [Saccharomonospora azurea SZMC 14600]
gi|359739151|gb|EHK88023.1| ribonuclease Z [Saccharomonospora azurea SZMC 14600]
Length = 306
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ + + +TH H DH GLP V L + P S +E E+L
Sbjct: 52 PASAVTR--ICLTHFHGDHCLGLPGVVQRLSLDGVARVHAHYPASGQEHFERLRHASVFH 109
Query: 170 GNVELNLDLVALD-------VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
EL + V D GE +R D V F V P + ++ L L++
Sbjct: 110 ETTELVEEPVTGDGVVARGEFGELSALRLDHPVEAFGYRLVEPDRRTMVPRL---LRRHG 166
Query: 223 IHLKGKQIEKLKKSG--------VEITDIILSPEVAFTGDTTSEFMLNPRNAD-----AL 269
IH G + L +SG V + D+ V TG + F+++ R D A
Sbjct: 167 IH--GPDVGALLRSGSLTVGGRTVAVEDV----SVLRTGQRFA-FVMDTRLCDNVFALAQ 219
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
A +L+ EATFLD+E + H ++GH + A+ + ++LTHFS RY
Sbjct: 220 DADLLVIEATFLDEEAELAH--RYGHLTARQAARVARESGVRTLVLTHFSQRY 270
>gi|433637536|ref|YP_007283296.1| ribonuclease Z [Halovivax ruber XH-70]
gi|433289340|gb|AGB15163.1| ribonuclease Z [Halovivax ruber XH-70]
Length = 311
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 50/254 (19%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + I VP
Sbjct: 35 FDAGEGTQRQLMRYGTGFDISELFVTHVHGDHVLGIPGLLQTMDFNDRERKLRIHVPRGT 94
Query: 156 KEDVEKL-FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ V +L F + ++ +++ +D G+ ++ VR F+T H S GY L+
Sbjct: 95 RRQVRELAFSLD---AHISFPVEIADVDDGDVVSRGDEYEVRAFRTDHDTRSVGYA--LV 149
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKSG-VEITD-IILSPE-----------VAFTG 253
+ K ++ + G + +L + VE+ D ++ PE + +TG
Sbjct: 150 EDERKGRFDRERAEELGVPVGPKFSQLHEGEPVELDDGTVVRPEQVVGEPRPGRSLVYTG 209
Query: 254 DT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
DT T E P +LI +ATF DD E A H+ + E A
Sbjct: 210 DTRPTARTVEIADEP--------DLLIHDATFADDRA--ERAADTAHSTARQAAEIANRA 259
Query: 309 RNKAVLLTHFSSRY 322
K + L H SSRY
Sbjct: 260 SAKRLALVHLSSRY 273
>gi|260778076|ref|ZP_05886969.1| ribonuclease Z [Vibrio coralliilyticus ATCC BAA-450]
gi|260606089|gb|EEX32374.1| ribonuclease Z [Vibrio coralliilyticus ATCC BAA-450]
Length = 326
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 31/227 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P I + P + + + E + L DL
Sbjct: 58 IFITHLHGDHCYGLPGLLASAGMNRRSDPLIIIAP---KGIREWLEATMQFTKLHLPYDL 114
Query: 179 VALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIH------ 224
+ M + + H +PS Y YL KL +Q +
Sbjct: 115 QFVSAESLPSMTIGQFTISLCELEHRVPSFAYCFTESTIKAYLDFDKLAQQGVPRGPLWG 174
Query: 225 --LKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLD 282
+KG+ +E K+ ++S E + + ++ NAD K L E L
Sbjct: 175 QLVKGQNVEHEGKT-------LISEEFTYLEHGPRKLVIAGDNADPELLKHLCEECHLLV 227
Query: 283 DEMS-----IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHI 324
E + + A++ GH++ + E A+ ++LTHFS RY +
Sbjct: 228 HESTYAEAFAKQAKEFGHSYGKLVAEFAEVAGIPNLILTHFSPRYQL 274
>gi|104773888|ref|YP_618868.1| beta-lactamase hydrolase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513895|ref|YP_812801.1| beta-lactamase superfamily hydrolase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|418029478|ref|ZP_12668016.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418036513|ref|ZP_12674929.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|122275335|sp|Q04B09.1|RNZ_LACDB RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|123251929|sp|Q1GAM2.1|RNZ_LACDA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|103422969|emb|CAI97642.1| Putative hydrolase (beta-lactamase superfamily III) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116093210|gb|ABJ58363.1| RNAse Z [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|354687563|gb|EHE87643.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354689784|gb|EHE89757.1| Ribonuclease Z [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 309
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 23/222 (10%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DHI GLP +++R ++ P TI+ P I++ V+ I ++ + +
Sbjct: 59 IFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAGIEQFVKTSLRISKT--KISYPIK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
V L+ G V K H I S G+ + LL KL ++ G +
Sbjct: 117 FVTLEEGGKIVSERGFEVYTEKLDHRIDSWGFRMVEADKAGELLMDKL-AEFKVPNGPLL 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTS----EFMLNPRNADALR-----AKILITEATF 280
KLK+ VE+ D + F G + + R+ ++R A +L+ EATF
Sbjct: 176 GKLKRGEQVELADGTVLNGKDFLGPAKKGRVVTVIYDTRSTPSIRRLADHADVLVHEATF 235
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E + A+ + H+ ++ E A + LTH S+RY
Sbjct: 236 DASEGKL--ARDYYHSTCTQAAETASACHVGHLYLTHVSARY 275
>gi|16801150|ref|NP_471418.1| hypothetical protein lin2084 [Listeria innocua Clip11262]
gi|423098876|ref|ZP_17086584.1| ribonuclease Z [Listeria innocua ATCC 33091]
gi|41017573|sp|Q92A38.1|RNZ_LISIN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|16414585|emb|CAC97314.1| lin2084 [Listeria innocua Clip11262]
gi|370794703|gb|EHN62466.1| ribonuclease Z [Listeria innocua ATCC 33091]
Length = 306
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 98/228 (42%), Gaps = 36/228 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE + + ++N +
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPAGIAEYVETSLRLSGTRLTYKINFE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ V EM +V H + S GY I L +KLK + G
Sbjct: 119 EIEPGVIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AGPVF 174
Query: 231 EKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRAKIL 274
+KLK ++ + I P+ ++ GD T SE L A+ A IL
Sbjct: 175 QKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETVSELEL------AMNADIL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ EATF D+ + A ++ H+ + AK K ++LTH SSRY
Sbjct: 229 VHEATFEGDKAKM--AGEYMHSTTLQAANLAKAANVKKLILTHISSRY 274
>gi|386035827|ref|YP_005955740.1| ribonuclease Z [Klebsiella pneumoniae KCTC 2242]
gi|424831617|ref|ZP_18256345.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|339762955|gb|AEJ99175.1| ribonuclease Z [Klebsiella pneumoniae KCTC 2242]
gi|414709052|emb|CCN30756.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 306
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVELADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|229061814|ref|ZP_04199147.1| Ribonuclease Z [Bacillus cereus AH603]
gi|423512245|ref|ZP_17488776.1| ribonuclease Z [Bacillus cereus HuA2-1]
gi|228717560|gb|EEL69224.1| Ribonuclease Z [Bacillus cereus AH603]
gi|402449216|gb|EJV81053.1| ribonuclease Z [Bacillus cereus HuA2-1]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 41/232 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V + D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 228 VLVHEATFAAEDE---QQAYDYFHSTSKQAASIAVQANAKRLILTHISSRYQ 276
>gi|229071647|ref|ZP_04204865.1| Ribonuclease Z [Bacillus cereus F65185]
gi|228711583|gb|EEL63540.1| Ribonuclease Z [Bacillus cereus F65185]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + G
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMSVK-PGPIF 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEATF 280
++LK VE+ D + F G ++ + R +A R A +L+ EATF
Sbjct: 176 KRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEATF 235
Query: 281 -LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+DE + A + H+ + A K ++LTH SSRY
Sbjct: 236 AAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|334124926|ref|ZP_08498920.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
gi|333387496|gb|EGK58690.1| ribonuclease Z [Enterobacter hormaechei ATCC 49162]
Length = 305
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 36/257 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N P TI+ P I+E VE + S + L+
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNANPLTIYGPVGIQEFVETTLRLSGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK--- 234
+V + G ++ D VR + +H + GY + ++ K ++ Q + +K
Sbjct: 118 VVEIGEGLVFD-DGDYQVRAYPLNHPVECYGYRV---QEHDKPGALNAAALQADGVKPGP 173
Query: 235 -----KSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
K G +T + + P+ +A GD T+ R A+ + +++
Sbjct: 174 LFHRLKQGETVTLEDGRVINGQEYLAPPQPGKKLAIFGD-TAPCPSARRLAEGV--DVMV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EAT L+ M E A GH+ + + A+ +++TH SSRY + + + +
Sbjct: 231 HEAT-LEAAME-EKANSRGHSSTCQAAQLAREAGVGKLIVTHVSSRYDVRGCESLLAECR 288
Query: 336 SKVSAKVVPLTEGFKSV 352
A L E F V
Sbjct: 289 EVFPA--CELAEDFAQV 303
>gi|16079441|ref|NP_390265.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|221310303|ref|ZP_03592150.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|221314627|ref|ZP_03596432.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319550|ref|ZP_03600844.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. JH642]
gi|221323826|ref|ZP_03605120.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SMY]
gi|321311863|ref|YP_004204150.1| ribonuclease Z [Bacillus subtilis BSn5]
gi|402776646|ref|YP_006630590.1| ribonuclease Z [Bacillus subtilis QB928]
gi|428279864|ref|YP_005561599.1| ribonuclease Z [Bacillus subtilis subsp. natto BEST195]
gi|430759151|ref|YP_007209075.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449094881|ref|YP_007427372.1| ribonuclease Z [Bacillus subtilis XF-1]
gi|452915423|ref|ZP_21964049.1| ribonuclease Z [Bacillus subtilis MB73/2]
gi|1731073|sp|P54548.1|RNZ_BACSU RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|1303962|dbj|BAA12617.1| YqjK [Bacillus subtilis]
gi|2634819|emb|CAB14316.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. 168]
gi|291484821|dbj|BAI85896.1| ribonuclease Z [Bacillus subtilis subsp. natto BEST195]
gi|320018137|gb|ADV93123.1| ribonuclease Z [Bacillus subtilis BSn5]
gi|402481826|gb|AFQ58335.1| Ribonuclease Z [Bacillus subtilis QB928]
gi|407959629|dbj|BAM52869.1| ribonuclease Z [Bacillus subtilis BEST7613]
gi|407965204|dbj|BAM58443.1| ribonuclease Z [Bacillus subtilis BEST7003]
gi|430023671|gb|AGA24277.1| Ribonuclease Z [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449028796|gb|AGE64035.1| ribonuclease Z [Bacillus subtilis XF-1]
gi|452115771|gb|EME06167.1| ribonuclease Z [Bacillus subtilis MB73/2]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 35/247 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT--HLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H + + GY + L+ + K+ G +
Sbjct: 117 IQEIEEGIVFE-DDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQ 175
Query: 232 KLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
K+KK G +T D + P+ V F+GDT L D +L+ E
Sbjct: 176 KIKK-GETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF ++ + + H T + + AK R K ++LTH S+RY + A L+LQ K
Sbjct: 232 ATFAKEDRKLAYDYYHSTTEQAAV--TAKEARAKQLILTHISARYQGD----ASLELQ-K 284
Query: 338 VSAKVVP 344
+ V P
Sbjct: 285 EAVDVFP 291
>gi|331647927|ref|ZP_08349019.1| ribonuclease Z [Escherichia coli M605]
gi|386619890|ref|YP_006139470.1| Ribonuclease Z [Escherichia coli NA114]
gi|387830202|ref|YP_003350139.1| hypothetical protein ECSF_2149 [Escherichia coli SE15]
gi|417662879|ref|ZP_12312460.1| ribonuclease Z [Escherichia coli AA86]
gi|432422617|ref|ZP_19665162.1| ribonuclease Z [Escherichia coli KTE178]
gi|432500755|ref|ZP_19742512.1| ribonuclease Z [Escherichia coli KTE216]
gi|432559519|ref|ZP_19796188.1| ribonuclease Z [Escherichia coli KTE49]
gi|432695130|ref|ZP_19930329.1| ribonuclease Z [Escherichia coli KTE162]
gi|432711322|ref|ZP_19946382.1| ribonuclease Z [Escherichia coli KTE6]
gi|432919732|ref|ZP_20123846.1| ribonuclease Z [Escherichia coli KTE173]
gi|432927635|ref|ZP_20129064.1| ribonuclease Z [Escherichia coli KTE175]
gi|432981697|ref|ZP_20170472.1| ribonuclease Z [Escherichia coli KTE211]
gi|433097139|ref|ZP_20283323.1| ribonuclease Z [Escherichia coli KTE139]
gi|433106561|ref|ZP_20292536.1| ribonuclease Z [Escherichia coli KTE148]
gi|281179359|dbj|BAI55689.1| conserved hypothetical protein [Escherichia coli SE15]
gi|330912097|gb|EGH40607.1| ribonuclease Z [Escherichia coli AA86]
gi|331043651|gb|EGI15789.1| ribonuclease Z [Escherichia coli M605]
gi|333970391|gb|AEG37196.1| Ribonuclease Z [Escherichia coli NA114]
gi|430944229|gb|ELC64328.1| ribonuclease Z [Escherichia coli KTE178]
gi|431028332|gb|ELD41376.1| ribonuclease Z [Escherichia coli KTE216]
gi|431090739|gb|ELD96490.1| ribonuclease Z [Escherichia coli KTE49]
gi|431233712|gb|ELF29299.1| ribonuclease Z [Escherichia coli KTE162]
gi|431249002|gb|ELF43177.1| ribonuclease Z [Escherichia coli KTE6]
gi|431443776|gb|ELH24802.1| ribonuclease Z [Escherichia coli KTE173]
gi|431444158|gb|ELH25182.1| ribonuclease Z [Escherichia coli KTE175]
gi|431491006|gb|ELH70613.1| ribonuclease Z [Escherichia coli KTE211]
gi|431615487|gb|ELI84616.1| ribonuclease Z [Escherichia coli KTE139]
gi|431627268|gb|ELI95679.1| ribonuclease Z [Escherichia coli KTE148]
Length = 305
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEISTGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|152976548|ref|YP_001376065.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
gi|189043779|sp|A7GSG2.1|RNZ_BACCN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|152025300|gb|ABS23070.1| ribonuclease Z [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P I++ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIEQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYI------ 223
+V + + G +E + V + H I GY I LL +KL++ +
Sbjct: 117 IVEITEEGIVFEDKQ-FYVETKRLSHGIECFGYRIVEKDIQGPLLVEKLREANVKPGPIF 175
Query: 224 -HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK +I +L+ V + D I P+ + GDT R DA R A
Sbjct: 176 KRLKDGEIVELEDGRVLDGKDFIGPPQKGRIITILGDT--------RYCDASRILAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
+L+ EATF + + H H T + I A K ++LTH SSRY D+ + +L
Sbjct: 228 VLVHEATFAAADQTQAHDYFHSTTEQAARI--ALEANVKRLILTHISSRYQ-GDMYKELL 284
Query: 333 KLQSKVSA 340
+ V A
Sbjct: 285 REAKAVFA 292
>gi|31981497|ref|NP_444485.2| zinc phosphodiesterase ELAC protein 1 [Mus musculus]
gi|41017770|sp|Q8VEB6.1|RNZ1_MOUSE RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|148677608|gb|EDL09555.1| elaC homolog 1 (E. coli), isoform CRA_b [Mus musculus]
Length = 362
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 62/263 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-----LKPPTIFVPPSIKEDVEKLFE--------- 164
+FITH H DH GLP + + L + +P I+ P +++ + + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVARQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 165 --IHRSLGNVE----------LNLD-----------LVALDVGE-TYEMRND--IVVRPF 198
+H + + ++D + LD E +Y + +D VV+ F
Sbjct: 118 YVVHELVPTADQCPVEELREFAHMDETDSSPKGQGRTILLDAEENSYCLVDDEQFVVKAF 177
Query: 199 KTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKK-------SGVEIT--DI 243
+ H IPS G+ + ++ K L+ G KLK +GV I+ D+
Sbjct: 178 RLFHRIPSFGFSVVEKKRAGKLNAQKLRDLGVPPGPAYGKLKNGISVVLDNGVTISPQDV 237
Query: 244 ILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299
+ P +V GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 LKKPMVGRKVCILGDC-SGVVGDGGVKLCFEADLLIHEATLDDSQM--DKAREHGHSTPQ 294
Query: 300 EIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 MAAAFAKLCRAKRLVLTHFSQRY 317
>gi|218690432|ref|YP_002398644.1| ribonuclease Z [Escherichia coli ED1a]
gi|419701104|ref|ZP_14228706.1| ribonuclease Z [Escherichia coli SCI-07]
gi|422382142|ref|ZP_16462303.1| ribonuclease Z [Escherichia coli MS 57-2]
gi|432441765|ref|ZP_19684105.1| ribonuclease Z [Escherichia coli KTE189]
gi|432446881|ref|ZP_19689180.1| ribonuclease Z [Escherichia coli KTE191]
gi|432733004|ref|ZP_19967837.1| ribonuclease Z [Escherichia coli KTE45]
gi|432760090|ref|ZP_19994584.1| ribonuclease Z [Escherichia coli KTE46]
gi|433014534|ref|ZP_20202882.1| ribonuclease Z [Escherichia coli KTE104]
gi|433024154|ref|ZP_20212141.1| ribonuclease Z [Escherichia coli KTE106]
gi|433323743|ref|ZP_20401074.1| ribonuclease Z [Escherichia coli J96]
gi|254808633|sp|B7MXV1.1|RBN_ECO81 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218427996|emb|CAR08917.2| binuclear zinc phosphodiesterase [Escherichia coli ED1a]
gi|324006621|gb|EGB75840.1| ribonuclease Z [Escherichia coli MS 57-2]
gi|380347850|gb|EIA36136.1| ribonuclease Z [Escherichia coli SCI-07]
gi|430966219|gb|ELC83627.1| ribonuclease Z [Escherichia coli KTE189]
gi|430973154|gb|ELC90122.1| ribonuclease Z [Escherichia coli KTE191]
gi|431276191|gb|ELF67218.1| ribonuclease Z [Escherichia coli KTE45]
gi|431307744|gb|ELF96034.1| ribonuclease Z [Escherichia coli KTE46]
gi|431530632|gb|ELI07311.1| ribonuclease Z [Escherichia coli KTE104]
gi|431535226|gb|ELI11607.1| ribonuclease Z [Escherichia coli KTE106]
gi|432347841|gb|ELL42298.1| ribonuclease Z [Escherichia coli J96]
Length = 305
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|425092586|ref|ZP_18495671.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|405611812|gb|EKB84578.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
Length = 306
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 94/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ VE+ D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVELADGRVIDGSHYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|457095122|gb|EMG25617.1| Ribonuclease Z [Streptococcus parauberis KRS-02083]
Length = 309
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 49/263 (18%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP +++SR T I+ P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIEKIFITHLHGDHIFGLPGFLSSRAFQASDEQTDIDIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK V+ ++ S ++N + +G+ E + +V K H I GY +
Sbjct: 96 VGIKNYVQTSLKLSGSRLPYQINFHEFDESSLGKILET-DKFIVYAEKLAHTIFCMGYRV 154
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VA 250
L ++LK ++ G K+ KSG +I D I +P+ +
Sbjct: 155 VQKDLEGTLDAERLKAAGVNF-GPLFGKI-KSGQDIVLEDGQTIYAKDYISAPKPGKIIT 212
Query: 251 FTGDT----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT SE + +NAD +L+ E+T+ + I A+ HGH+ + + AK
Sbjct: 213 IIGDTRKTPASERL--AKNAD-----VLVHESTYGKGDEKI--ARNHGHSTNMQAAQVAK 263
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQ 329
+ +LL H S+R+ D RQ
Sbjct: 264 NAGVEKLLLNHVSARFLSRDCRQ 286
>gi|146318967|ref|YP_001198679.1| ribonuclease Z [Streptococcus suis 05ZYH33]
gi|146321177|ref|YP_001200888.1| ribonuclease Z [Streptococcus suis 98HAH33]
gi|253752036|ref|YP_003025177.1| ribonuclease Z [Streptococcus suis SC84]
gi|253753861|ref|YP_003027002.1| ribonuclease Z [Streptococcus suis P1/7]
gi|253755263|ref|YP_003028403.1| ribonuclease Z [Streptococcus suis BM407]
gi|386578157|ref|YP_006074563.1| Beta-lactamase-like protein [Streptococcus suis GZ1]
gi|386580212|ref|YP_006076617.1| ribonuclease Z [Streptococcus suis JS14]
gi|386582234|ref|YP_006078638.1| ribonuclease Z [Streptococcus suis SS12]
gi|386588420|ref|YP_006084821.1| ribonuclease Z [Streptococcus suis A7]
gi|403061792|ref|YP_006650008.1| ribonuclease Z [Streptococcus suis S735]
gi|166991510|sp|A4W299.1|RNZ_STRS2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991512|sp|A4VVZ0.1|RNZ_STRSY RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|145689773|gb|ABP90279.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Streptococcus suis 05ZYH33]
gi|145691983|gb|ABP92488.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Streptococcus suis 98HAH33]
gi|251816325|emb|CAZ51954.1| ribonuclease Z [Streptococcus suis SC84]
gi|251817727|emb|CAZ55478.1| ribonuclease Z [Streptococcus suis BM407]
gi|251820107|emb|CAR46403.1| ribonuclease Z [Streptococcus suis P1/7]
gi|292558620|gb|ADE31621.1| Beta-lactamase-like protein [Streptococcus suis GZ1]
gi|319758404|gb|ADV70346.1| ribonuclease Z [Streptococcus suis JS14]
gi|353734380|gb|AER15390.1| ribonuclease Z [Streptococcus suis SS12]
gi|354985581|gb|AER44479.1| ribonuclease Z [Streptococcus suis A7]
gi|402809118|gb|AFR00610.1| ribonuclease Z [Streptococcus suis S735]
Length = 309
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + + T I+ P I+ V ++ + ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQSSEEQTDIDIYGPVGIRSFVLASLKVSGTRLPYRIH 118
Query: 176 LDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLK----GK 228
+D VG+ E + V K H IP GY + L L + + G
Sbjct: 119 FHEFDVDTVGQVLET-DKFTVFAEKLDHTIPCVGYRVIQKDLEGTLDAEALRAAGVPFGP 177
Query: 229 QIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
K+K + G EI +D I P V GDT + A+ A +L+
Sbjct: 178 LFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTRK---CHASVRLAVNADVLV 234
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
EAT+ + I A++HGH+ E + AK K +LL H S R+ +DI Q
Sbjct: 235 HEATYGKGDEKI--ARKHGHSTNMEAAQVAKDAGVKQLLLNHISPRFLSKDISQ 286
>gi|448417256|ref|ZP_21579274.1| ribonuclease Z [Halosarcina pallida JCM 14848]
gi|445678479|gb|ELZ30972.1| ribonuclease Z [Halosarcina pallida JCM 14848]
Length = 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P V + + + P + PP
Sbjct: 35 FDCGEGTQRQMMRFGTGFTVSHLFVTHLHGDHVLGIPGLVQTWDFNDREEPLVVHAPPGS 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-IPSQGYVIYLL 214
K + L E +N+ V G D VR F+T+H + S GY L+
Sbjct: 95 KRHLRNLVESGGYRPGFPINIHEVK--PGNVALSGGDYEVRTFETNHRNVRSMGYA--LV 150
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTG 253
+ ++ K G +L + VE+ D ++ PE + +TG
Sbjct: 151 EDDRRGRFDREKAEALGVPVGPAFGRLHEGESVELEDGTVVRPEQVVGESRPGRRLVYTG 210
Query: 254 DTTSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT P +A A +L+ +ATF DD + A+ GH+ E E A
Sbjct: 211 DT------RPVDATVEVAAEPDLLVHDATFADDRA--DRARGTGHSTGREAAEIASRAGA 262
Query: 311 KAVLLTHFSSRY 322
+ + LTH SSRY
Sbjct: 263 RRLALTHISSRY 274
>gi|42783256|ref|NP_980503.1| ribonuclease Z [Bacillus cereus ATCC 10987]
gi|206976331|ref|ZP_03237239.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217961634|ref|YP_002340204.1| ribonuclease Z [Bacillus cereus AH187]
gi|222097590|ref|YP_002531647.1| ribonuclease z [Bacillus cereus Q1]
gi|229140877|ref|ZP_04269422.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|375286149|ref|YP_005106588.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|423354643|ref|ZP_17332268.1| ribonuclease Z [Bacillus cereus IS075]
gi|423374050|ref|ZP_17351389.1| ribonuclease Z [Bacillus cereus AND1407]
gi|423566892|ref|ZP_17543139.1| ribonuclease Z [Bacillus cereus MSX-A12]
gi|56749438|sp|Q731F6.1|RNZ_BACC1 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808611|sp|B7HNQ7.1|RNZ_BACC7 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808612|sp|B9IXD7.1|RNZ_BACCQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|42739184|gb|AAS43111.1| metallo-beta-lactamase family protein [Bacillus cereus ATCC 10987]
gi|206745527|gb|EDZ56926.1| ribonuclease Z [Bacillus cereus H3081.97]
gi|217065116|gb|ACJ79366.1| ribonuclease Z [Bacillus cereus AH187]
gi|221241648|gb|ACM14358.1| metallo-beta-lactamase family protein [Bacillus cereus Q1]
gi|228642667|gb|EEK98953.1| Ribonuclease Z [Bacillus cereus BDRD-ST26]
gi|358354676|dbj|BAL19848.1| metallo-beta-lactamase family protein [Bacillus cereus NC7401]
gi|401086489|gb|EJP94712.1| ribonuclease Z [Bacillus cereus IS075]
gi|401094865|gb|EJQ02935.1| ribonuclease Z [Bacillus cereus AND1407]
gi|401215407|gb|EJR22124.1| ribonuclease Z [Bacillus cereus MSX-A12]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT F R A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGQDFIGPPQKGRIITILGDT--RFCEASREL-AQDADVLVHEA 233
Query: 279 TF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 234 TFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|312967571|ref|ZP_07781786.1| ribonuclease Z [Escherichia coli 2362-75]
gi|417756532|ref|ZP_12404607.1| ribonuclease Z [Escherichia coli DEC2B]
gi|418997790|ref|ZP_13545384.1| ribonuclease Z [Escherichia coli DEC1A]
gi|419002821|ref|ZP_13550348.1| ribonuclease Z [Escherichia coli DEC1B]
gi|419008515|ref|ZP_13555946.1| ribonuclease Z [Escherichia coli DEC1C]
gi|419014199|ref|ZP_13561549.1| ribonuclease Z [Escherichia coli DEC1D]
gi|419019198|ref|ZP_13566505.1| ribonuclease Z [Escherichia coli DEC1E]
gi|419024701|ref|ZP_13571927.1| ribonuclease Z [Escherichia coli DEC2A]
gi|419029739|ref|ZP_13576902.1| ribonuclease Z [Escherichia coli DEC2C]
gi|419035664|ref|ZP_13582750.1| ribonuclease Z [Escherichia coli DEC2D]
gi|419040427|ref|ZP_13587455.1| ribonuclease Z [Escherichia coli DEC2E]
gi|312287768|gb|EFR15673.1| ribonuclease Z [Escherichia coli 2362-75]
gi|377843617|gb|EHU08657.1| ribonuclease Z [Escherichia coli DEC1A]
gi|377844033|gb|EHU09070.1| ribonuclease Z [Escherichia coli DEC1C]
gi|377847700|gb|EHU12698.1| ribonuclease Z [Escherichia coli DEC1B]
gi|377857052|gb|EHU21907.1| ribonuclease Z [Escherichia coli DEC1D]
gi|377860252|gb|EHU25078.1| ribonuclease Z [Escherichia coli DEC1E]
gi|377863485|gb|EHU28290.1| ribonuclease Z [Escherichia coli DEC2A]
gi|377873948|gb|EHU38579.1| ribonuclease Z [Escherichia coli DEC2B]
gi|377877921|gb|EHU42510.1| ribonuclease Z [Escherichia coli DEC2C]
gi|377880020|gb|EHU44592.1| ribonuclease Z [Escherichia coli DEC2D]
gi|377890467|gb|EHU54924.1| ribonuclease Z [Escherichia coli DEC2E]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKLGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|257437856|ref|ZP_05613611.1| ribonuclease Z [Faecalibacterium prausnitzii A2-165]
gi|257199516|gb|EEU97800.1| putative ribonuclease Z [Faecalibacterium prausnitzii A2-165]
Length = 312
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 35/232 (15%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLG-- 170
++ + + +TH H DHI GLP + + G +P T++ P + E L + L
Sbjct: 52 MKLDAICLTHYHGDHIFGLPGLLQTLGCQGRERPLTLYGPEGLGEVWPALRTLAGPLPYP 111
Query: 171 --NVELN---LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK----LKKQ 221
V+L+ +DL L G + + PF+T H +PS+GY + L R K +
Sbjct: 112 VRAVQLDTDPIDLTTLSSGWPAGAQ----LTPFRTRHRVPSRGYRLDLPRAGRFDPAKAR 167
Query: 222 YIHL---------KGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNAD 267
+++ +G+ I L+ V +L P F+GDT L
Sbjct: 168 ALNVPVPAWKLLQRGQSI-PLENGAVVSPADVLGPARRGLRFVFSGDTAPCPAL---EQA 223
Query: 268 ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
A A + + +AT+ D+E + A+Q GH+ ++ AK + L H+S
Sbjct: 224 AQNADLFLCDATYPDNEQEAQ-AKQWGHSTFAQGAAIAKKADVRRFWLMHYS 274
>gi|422806264|ref|ZP_16854696.1| ribonuclease BN [Escherichia fergusonii B253]
gi|324112802|gb|EGC06778.1| ribonuclease BN [Escherichia fergusonii B253]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETALRLSSSW--TDYPLD 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 118 IIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEYEKPGALDAKGLKAAGVQ-PGP 173
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 174 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+I EAT +MS+E A GH+ + A+ +++TH SSRY
Sbjct: 229 MIHEATL---DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRY 275
>gi|228954426|ref|ZP_04116452.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|423426277|ref|ZP_17403308.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|423503170|ref|ZP_17479762.1| ribonuclease Z [Bacillus cereus HD73]
gi|449091100|ref|YP_007423541.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228805358|gb|EEM51951.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|401111024|gb|EJQ18923.1| ribonuclease Z [Bacillus cereus BAG3X2-2]
gi|402459391|gb|EJV91128.1| ribonuclease Z [Bacillus cereus HD73]
gi|449024857|gb|AGE80020.1| Ribonuclease Z [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + G
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVERDIQGALLVDKLLEMGVK-PGPIF 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEATF 280
++LK VE+ D + F G ++ + R +A R A +L+ EATF
Sbjct: 176 KRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEATF 235
Query: 281 -LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+DE + A + H+ + A K ++LTH SSRY
Sbjct: 236 AAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|228987335|ref|ZP_04147455.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157725|ref|ZP_04285800.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228625682|gb|EEK82434.1| Ribonuclease Z [Bacillus cereus ATCC 4342]
gi|228772307|gb|EEM20753.1| Ribonuclease Z [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT F R A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--RFCEASREL-AQDADVLVHEA 233
Query: 279 TF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 234 TFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|390960643|ref|YP_006424477.1| ribonuclease Z [Thermococcus sp. CL1]
gi|390518951|gb|AFL94683.1| ribonuclease Z [Thermococcus sp. CL1]
Length = 314
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L++ KP I+ P E V+ + G +
Sbjct: 57 IFITHFHGDHYLGLAALIQTMNLWDREKPLHIYGPKYTFEFVQHFLQS----GFFRPGFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L +KL QY +G +
Sbjct: 113 VHVHELGETRLRFGDYEIWSFKVEHGIPALGYVFKEKDRRGRFLPEKL-AQYGLSEGPVL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+L++ G +E I+ E V +TGDT A RA +LI +A
Sbjct: 172 GRLEREGKIEWNGRIIRLEDVTGPRRKGVKVVYTGDTGPA---ERTRLFAERADLLIHDA 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
T+L E H+ + E E A+ R K + L H + RY ++
Sbjct: 229 TYLSQGDRGESY----HSTVEEACEIARNARVKLLALFHRAFRYTYDE 272
>gi|425305998|ref|ZP_18695707.1| ribonuclease Z [Escherichia coli N1]
gi|408228165|gb|EKI51707.1| ribonuclease Z [Escherichia coli N1]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|333905232|ref|YP_004479103.1| ribonuclease Z [Streptococcus parauberis KCTC 11537]
gi|333120497|gb|AEF25431.1| ribonuclease Z [Streptococcus parauberis KCTC 11537]
gi|456371192|gb|EMF50088.1| Ribonuclease Z [Streptococcus parauberis KRS-02109]
Length = 309
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 49/263 (18%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP +++SR T I+ P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIEKIFITHLHGDHIFGLPGFLSSRAFQASDEQTDIDIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK V+ ++ S ++N + +G+ E + +V K H I GY +
Sbjct: 96 VGIKNYVQTSLKLSGSRLPYQINFHEFDESSLGKILET-DKFIVYAEKLAHTIFCMGYRV 154
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VA 250
L ++LK ++ G K+ KSG +I D I +P+ +
Sbjct: 155 VQKDLEGTLDAERLKAAGVNF-GPLFGKI-KSGQDIVLEDGRTIYAKDYISAPKPGKIIT 212
Query: 251 FTGDT----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT SE + +NAD +L+ E+T+ + I A+ HGH+ + + AK
Sbjct: 213 IIGDTRKTPASERL--AKNAD-----VLVHESTYGKGDEKI--ARNHGHSTNMQAAQVAK 263
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQ 329
+ +LL H S+R+ D RQ
Sbjct: 264 NAGVEKLLLNHVSARFLSRDCRQ 286
>gi|425301133|ref|ZP_18691031.1| ribonuclease Z [Escherichia coli 07798]
gi|408213519|gb|EKI38004.1| ribonuclease Z [Escherichia coli 07798]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|398304556|ref|ZP_10508142.1| ribonuclease Z [Bacillus vallismortis DV1-F-3]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 111/253 (43%), Gaps = 47/253 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
LV ++ E +D VV H + + GY + L+ + K+ G
Sbjct: 115 LVIREIEEGIVFEDDQFVVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRA----- 271
+K+ K+G IT D + P+ V F+GDT R +D L+A
Sbjct: 175 QKI-KNGETITLEDGRTINGNDFLEPPKKGRAVVFSGDT--------RVSDKLKALARDC 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+L+ EATF ++ + + H T + I AK K ++LTH S+RY + +
Sbjct: 226 DVLVHEATFAKEDRKLAYDYFHSTTEQAAI--TAKEAGAKKLILTHISARYQGD----SS 279
Query: 332 LKLQSKVSAKVVP 344
L+LQ K +A V P
Sbjct: 280 LELQ-KEAADVFP 291
>gi|206971168|ref|ZP_03232119.1| ribonuclease Z [Bacillus cereus AH1134]
gi|229081399|ref|ZP_04213902.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|229180422|ref|ZP_04307765.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|229192354|ref|ZP_04319318.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|365159074|ref|ZP_09355258.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412054|ref|ZP_17389174.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|423432161|ref|ZP_17409165.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|423437595|ref|ZP_17414576.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
gi|206733940|gb|EDZ51111.1| ribonuclease Z [Bacillus cereus AH1134]
gi|228591134|gb|EEK48989.1| Ribonuclease Z [Bacillus cereus ATCC 10876]
gi|228603169|gb|EEK60647.1| Ribonuclease Z [Bacillus cereus 172560W]
gi|228702021|gb|EEL54504.1| Ribonuclease Z [Bacillus cereus Rock4-2]
gi|363625590|gb|EHL76611.1| ribonuclease Z [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104122|gb|EJQ12099.1| ribonuclease Z [Bacillus cereus BAG3O-2]
gi|401116917|gb|EJQ24755.1| ribonuclease Z [Bacillus cereus BAG4O-1]
gi|401120750|gb|EJQ28546.1| ribonuclease Z [Bacillus cereus BAG4X12-1]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + G
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVK-PGPIF 175
Query: 231 EKLKKS-GVEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEATF 280
++LK VE+ D + F G ++ + R +A R A +L+ EATF
Sbjct: 176 KRLKDGEAVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEATF 235
Query: 281 -LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+DE + A + H+ + A K ++LTH SSRY
Sbjct: 236 AAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|432554359|ref|ZP_19791082.1| ribonuclease Z [Escherichia coli KTE47]
gi|431084164|gb|ELD90335.1| ribonuclease Z [Escherichia coli KTE47]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|215487486|ref|YP_002329917.1| ribonuclease Z [Escherichia coli O127:H6 str. E2348/69]
gi|415840545|ref|ZP_11521973.1| ribonuclease Z [Escherichia coli RN587/1]
gi|416335457|ref|ZP_11672150.1| Ribonuclease Z [Escherichia coli WV_060327]
gi|417281262|ref|ZP_12068562.1| ribonuclease BN [Escherichia coli 3003]
gi|425278569|ref|ZP_18669815.1| ribonuclease Z [Escherichia coli ARS4.2123]
gi|432466429|ref|ZP_19708517.1| ribonuclease Z [Escherichia coli KTE205]
gi|433073469|ref|ZP_20260123.1| ribonuclease Z [Escherichia coli KTE129]
gi|433120868|ref|ZP_20306540.1| ribonuclease Z [Escherichia coli KTE157]
gi|433183941|ref|ZP_20368191.1| ribonuclease Z [Escherichia coli KTE85]
gi|254808629|sp|B7UFT1.1|RBN_ECO27 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|215265558|emb|CAS09961.1| binuclear zinc phosphodiesterase [Escherichia coli O127:H6 str.
E2348/69]
gi|320196140|gb|EFW70764.1| Ribonuclease Z [Escherichia coli WV_060327]
gi|323188002|gb|EFZ73297.1| ribonuclease Z [Escherichia coli RN587/1]
gi|386245591|gb|EII87321.1| ribonuclease BN [Escherichia coli 3003]
gi|408202131|gb|EKI27265.1| ribonuclease Z [Escherichia coli ARS4.2123]
gi|430993235|gb|ELD09589.1| ribonuclease Z [Escherichia coli KTE205]
gi|431587743|gb|ELI59095.1| ribonuclease Z [Escherichia coli KTE129]
gi|431642469|gb|ELJ10192.1| ribonuclease Z [Escherichia coli KTE157]
gi|431706191|gb|ELJ70765.1| ribonuclease Z [Escherichia coli KTE85]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|169795341|ref|YP_001713134.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213158673|ref|YP_002319971.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|215482875|ref|YP_002325078.1| ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|301347162|ref|ZP_07227903.1| Ribonuclease Z [Acinetobacter baumannii AB056]
gi|301511969|ref|ZP_07237206.1| Ribonuclease Z [Acinetobacter baumannii AB058]
gi|301595649|ref|ZP_07240657.1| Ribonuclease Z [Acinetobacter baumannii AB059]
gi|332850452|ref|ZP_08432772.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332871904|ref|ZP_08440316.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|417573750|ref|ZP_12224604.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|421620409|ref|ZP_16061346.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|421642704|ref|ZP_16083216.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|421646873|ref|ZP_16087312.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|421660284|ref|ZP_16100484.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|421701088|ref|ZP_16140596.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|421795459|ref|ZP_16231542.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|421802277|ref|ZP_16238230.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
gi|169148268|emb|CAM86133.1| Ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Acinetobacter
baumannii AYE]
gi|213057833|gb|ACJ42735.1| ribonuclease Z [Acinetobacter baumannii AB0057]
gi|213986249|gb|ACJ56548.1| Ribonuclease Z [Acinetobacter baumannii AB307-0294]
gi|332730723|gb|EGJ62034.1| putative ribonuclease Z [Acinetobacter baumannii 6013150]
gi|332731118|gb|EGJ62419.1| putative ribonuclease Z [Acinetobacter baumannii 6013113]
gi|400209318|gb|EJO40288.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC-5]
gi|404568142|gb|EKA73248.1| putative ribonuclease Z [Acinetobacter baumannii IS-58]
gi|408512156|gb|EKK13802.1| putative ribonuclease Z [Acinetobacter baumannii IS-235]
gi|408517019|gb|EKK18570.1| putative ribonuclease Z [Acinetobacter baumannii IS-251]
gi|408700704|gb|EKL46152.1| putative ribonuclease Z [Acinetobacter baumannii OIFC074]
gi|408705308|gb|EKL50650.1| putative ribonuclease Z [Acinetobacter baumannii Naval-83]
gi|410401956|gb|EKP54091.1| putative ribonuclease Z [Acinetobacter baumannii Naval-21]
gi|410404074|gb|EKP56147.1| putative ribonuclease Z [Acinetobacter baumannii Canada BC1]
Length = 318
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|257076086|ref|ZP_05570447.1| metal dependent hydrolase [Ferroplasma acidarmanus fer1]
Length = 252
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 49/188 (26%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ I+H HLDH GGL + RG N+K TI P I+++ EK+ +I+ + N ++
Sbjct: 53 MLISHMHLDHYGGLAEILWYRGARNVKDELTIMGPKGIRKNTEKILQIYNTPDNYMFSVK 112
Query: 178 LVALDV---GETYEMRNDIV-------VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG 227
+++ GE YE++ + + + F +H+IP Y
Sbjct: 113 PNYVEINNNGEVYEIKTEFIDKSENDYIEAFSGNHIIPDNMY------------------ 154
Query: 228 KQIEKLKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEM 285
+L+ G I A+TGDT L NAD IL+ E T+ D +
Sbjct: 155 ----RLEYRGNTI---------AYTGDTAYNDNIPLLGENAD-----ILLHEMTYTDKDA 196
Query: 286 SIEHAQQH 293
I +H
Sbjct: 197 EIAKFWKH 204
>gi|440782583|ref|ZP_20960600.1| ribonuclease Z [Clostridium pasteurianum DSM 525]
gi|440220107|gb|ELP59316.1| ribonuclease Z [Clostridium pasteurianum DSM 525]
Length = 303
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 119 VFITHGHLDHIGGLP---MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ TH H DH+ GLP + +A+ G + P T+ P +K V + I L ELN
Sbjct: 57 ICFTHYHADHVAGLPGLLLTIANSG--RVDPLTLIGPTGLKNVVNGMTVIAPMLP-YELN 113
Query: 176 LDLVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIYLLR----KKLKKQYIHLKGKQI 230
L V E YE R N +++ H +P GY I + R K K + + K
Sbjct: 114 LVEVQ---QEFYEFRLNHMIIHTINCDHTLPCLGYSIEIKRMNKFNKEKAESNKIPTKFW 170
Query: 231 EKLKKSG-VEITDIILSPEVAFTGDTTSE----FMLNPRNADAL-----RAKILITEATF 280
L++ V+ I +PE+ GD ++ + R D++ + + I E +
Sbjct: 171 SILQRGNRVQFNSEIFTPEMVL-GDERKGIKICYITDTRPIDSIVNFIKESDLFICEGMY 229
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
DE +IE A ++ H E AK R + + LTHFS
Sbjct: 230 -GDEKNIEKAIKNKHMTFKEAAILAKLSRVQELWLTHFS 267
>gi|389845642|ref|YP_006347881.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|448616739|ref|ZP_21665449.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
gi|388242948|gb|AFK17894.1| ribonuclease Z (RNase Z) (tRNA 3 endonuclease) [Haloferax
mediterranei ATCC 33500]
gi|445751394|gb|EMA02831.1| ribonuclease Z [Haloferax mediterranei ATCC 33500]
Length = 311
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV--PPS 154
FD G R + + + +F+TH H DHI G+P + + +N + + + PP
Sbjct: 35 FDCGEGTQRQMMRFGTGFGISHLFVTHLHGDHILGIPGLIQTLD-FNERDDALAIHGPPG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
K +EKL +H ++ + G +D VR F+T H S GY +
Sbjct: 94 SKRHLEKL--VHAGGYQPGFHVSVHETQPGNVAYRADDYEVRAFETEHRTSSVGYSLVED 151
Query: 212 ----YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
R+K ++ + + G+ +E + ++ ++ P +V +TGDT
Sbjct: 152 DRPGRFNREKAEELGVPVGPAFGRLHTGEDVELEDGTVIKSEQVVGEPRPGRKVVYTGDT 211
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ A A +L+ +ATF D+E E A + H+ E A+ + L
Sbjct: 212 RP---LDSTIEIARDADLLVHDATFTDEES--ERATKTAHSTAREAARVARDADVRRFAL 266
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 267 THISARY 273
>gi|422370149|ref|ZP_16450543.1| ribonuclease Z [Escherichia coli MS 16-3]
gi|432899288|ref|ZP_20109980.1| ribonuclease Z [Escherichia coli KTE192]
gi|433029245|ref|ZP_20217104.1| ribonuclease Z [Escherichia coli KTE109]
gi|315298072|gb|EFU57341.1| ribonuclease Z [Escherichia coli MS 16-3]
gi|431426940|gb|ELH08984.1| ribonuclease Z [Escherichia coli KTE192]
gi|431542985|gb|ELI17981.1| ribonuclease Z [Escherichia coli KTE109]
Length = 305
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|229047834|ref|ZP_04193414.1| Ribonuclease Z [Bacillus cereus AH676]
gi|228723626|gb|EEL74991.1| Ribonuclease Z [Bacillus cereus AH676]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E I S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSI--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|383619856|ref|ZP_09946262.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|448696592|ref|ZP_21698004.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
gi|445783220|gb|EMA34055.1| ribonuclease Z [Halobiforma lacisalsi AJ5]
Length = 307
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 46/252 (18%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + P I P +
Sbjct: 31 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVFGIPGLLQTMAFNDREEPLAIHTPQAT 90
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + + G+ +D VR F+T H S GY +
Sbjct: 91 RRQLKGLVN---ALGNRPDFPIRISEVGDGDVAYRADDFEVRTFETDHDTRSVGYALVED 147
Query: 215 RKK--------------LKKQYIHL-KGKQIEKLKKSGVEITDIILSPE----VAFTGDT 255
+K + ++ L +G +E + VE ++ P + +TGDT
Sbjct: 148 DRKGRFDRERAEELGVPVGPKFSRLHEGDPVELEDGTVVEPDQVVGDPRPGRSIVYTGDT 207
Query: 256 -----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
T E P +LI +ATF DD E A + H+ E A
Sbjct: 208 RPTVRTIEVADEP--------DLLIHDATFADDRA--ERAGETAHSTARGAAEIASRAGA 257
Query: 311 KAVLLTHFSSRY 322
K + L H SSRY
Sbjct: 258 KRLALVHISSRY 269
>gi|355701952|gb|EHH29305.1| Zinc phosphodiesterase ELAC protein 1 [Macaca mulatta]
gi|355755034|gb|EHH58901.1| Zinc phosphodiesterase ELAC protein 1 [Macaca fascicularis]
gi|380788167|gb|AFE65959.1| zinc phosphodiesterase ELAC protein 1 [Macaca mulatta]
Length = 363
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFR 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|251787662|ref|YP_003002383.1| ribonuclease Z [Dickeya zeae Ech1591]
gi|247536283|gb|ACT04904.1| ribonuclease Z [Dickeya zeae Ech1591]
Length = 304
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 115/271 (42%), Gaps = 42/271 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R P + + +FITH H DH+ GLP + SR + ++ P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGKLEKIFITHLHGDHLFGLPGLLCSRSMAGVETPLTLYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
+K VE + S + L++V + G +E + V + H + GY I
Sbjct: 96 LKTFVETALTLSGSW--LTYPLEVVEVVPGTVFE-DHQFRVTAHELSHTLYCVGYRIEER 152
Query: 213 -----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD--------IILSP-----EVAFTGD 254
L +KL Q I G ++LK+ D L P +A GD
Sbjct: 153 PKPGPLDVEKLAAQGIK-PGAYFQQLKRGETVTLDDGRVLNGWDYLGPGLPGKSLAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T T E + D +++ EAT L+ M+ E A + GH+ + A+ K
Sbjct: 212 TRPTPEALKLAAGVD-----VMVHEAT-LEGAMA-ERANERGHSTTLQTAAAARDAGAKR 264
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
+++THFS+RY D+ + + Q+ A V
Sbjct: 265 LIITHFSARYGQADLERLRQECQTLFPATEV 295
>gi|445400654|ref|ZP_21430125.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
gi|444783228|gb|ELX07089.1| putative ribonuclease Z [Acinetobacter baumannii Naval-57]
Length = 318
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|290559852|gb|EFD93175.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 250
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 88 IGGHETCVIIPELKCAFDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASR 139
I G + + K AFD G ++ + F+ ITH HLDH G+ + R
Sbjct: 14 IKGQRNVSFVLDDKIAFDFGPHSLESLLEMGIDPLKIKFLLITHMHLDHYSGIAELLWYR 73
Query: 140 GLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF 198
++N K P +F P IK + +L E L L V +V + E ++ V+ F
Sbjct: 74 SIHNAKTPLMVFGPKGIKNNTARLME---DLKTPRLWSKQVYNNV-KYIEDKSHSFVQVF 129
Query: 199 KTHHVIPSQGY 209
HH+IP GY
Sbjct: 130 PAHHLIPDNGY 140
>gi|161507441|ref|YP_001577395.1| ribonuclease Z [Lactobacillus helveticus DPC 4571]
gi|172048277|sp|A8YV16.1|RNZ_LACH4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|160348430|gb|ABX27104.1| ribonuclease Z [Lactobacillus helveticus DPC 4571]
Length = 312
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 119/279 (42%), Gaps = 56/279 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTG------ 253
G+ + LL KL K I G + +LK+ V + D + F G
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIP-NGPLLGQLKRGDQVTLADGTVLNGKDFLGAEKPGR 205
Query: 254 ------DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
DT S + D A +L+ E+TF DE + H H + + I AK
Sbjct: 206 IVTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYHSTSVQAAKI--AKQ 260
Query: 308 IRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLT 346
K + L+H S+RY + KL+S+ + KV P T
Sbjct: 261 ENVKKLCLSHISARY----MGNKAKKLESQ-AKKVFPNT 294
>gi|153813336|ref|ZP_01966004.1| hypothetical protein RUMOBE_03753 [Ruminococcus obeum ATCC 29174]
gi|149830626|gb|EDM85717.1| ribonuclease Z [Ruminococcus obeum ATCC 29174]
Length = 303
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 30/223 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG- 227
++ +++ + E+ N + F+ +H + GY I +LR+ + K+Q I LK
Sbjct: 111 EIRFIEITKPQEVLELNGYRITAFRVNHNVICYGYTIEILRQGKFSPERAKEQAIPLKYW 170
Query: 228 ---KQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
++ + ++ GV T D++L P+ V +T DT T + N +D + I
Sbjct: 171 NPLQKGQTIEVDGVVYTPDMVLGPDRKGIKVTYTTDTRPTESILRNAAESD-----LFIC 225
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
E + +E IE A+ + H E A+ K + LTH+S
Sbjct: 226 EGMY-GEEDKIEKAKGYKHMTFREAAALARDANVKELWLTHYS 267
>gi|229075848|ref|ZP_04208824.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|229098612|ref|ZP_04229552.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|229104747|ref|ZP_04235408.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|229117638|ref|ZP_04247009.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|407706669|ref|YP_006830254.1| hypothetical protein MC28_3433 [Bacillus thuringiensis MC28]
gi|423378000|ref|ZP_17355284.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|423441121|ref|ZP_17418027.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|423448723|ref|ZP_17425602.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|423464195|ref|ZP_17440963.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|423533537|ref|ZP_17509955.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|423541207|ref|ZP_17517598.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|423547445|ref|ZP_17523803.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|423622772|ref|ZP_17598550.1| ribonuclease Z [Bacillus cereus VD148]
gi|228665817|gb|EEL21288.1| Ribonuclease Z [Bacillus cereus Rock1-3]
gi|228678620|gb|EEL32836.1| Ribonuclease Z [Bacillus cereus Rock3-28]
gi|228684691|gb|EEL38629.1| Ribonuclease Z [Bacillus cereus Rock3-29]
gi|228707163|gb|EEL59360.1| Ribonuclease Z [Bacillus cereus Rock4-18]
gi|401129317|gb|EJQ37000.1| ribonuclease Z [Bacillus cereus BAG5O-1]
gi|401172395|gb|EJQ79616.1| ribonuclease Z [Bacillus cereus HuB4-10]
gi|401179166|gb|EJQ86339.1| ribonuclease Z [Bacillus cereus HuB5-5]
gi|401260892|gb|EJR67060.1| ribonuclease Z [Bacillus cereus VD148]
gi|401636266|gb|EJS54020.1| ribonuclease Z [Bacillus cereus BAG1O-2]
gi|402417782|gb|EJV50082.1| ribonuclease Z [Bacillus cereus BAG4X2-1]
gi|402420462|gb|EJV52733.1| ribonuclease Z [Bacillus cereus BAG6O-1]
gi|402463756|gb|EJV95456.1| ribonuclease Z [Bacillus cereus HuB2-9]
gi|407384354|gb|AFU14855.1| Ribonuclease Z [Bacillus thuringiensis MC28]
Length = 307
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 95/226 (42%), Gaps = 29/226 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+V + T N+ V K H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKKLSHGIECFGYRIVEKDIQGVLLVDKLLEMGVKPGPIFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + D I P+ + GDT A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDTR---YCEASRELAQNADVLVHEA 233
Query: 279 TF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TF DDE + A + H+ + A K ++LTH SSRY
Sbjct: 234 TFAADDE---QQAHDYFHSTSKQAASIALHANAKRLILTHISSRYQ 276
>gi|417552171|ref|ZP_12203241.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|417562383|ref|ZP_12213262.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|421198101|ref|ZP_15655268.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|421457009|ref|ZP_15906346.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|421632144|ref|ZP_16072806.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|421804099|ref|ZP_16240009.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
gi|395524965|gb|EJG13054.1| putative ribonuclease Z [Acinetobacter baumannii OIFC137]
gi|395566069|gb|EJG27714.1| putative ribonuclease Z [Acinetobacter baumannii OIFC109]
gi|400206733|gb|EJO37704.1| putative ribonuclease Z [Acinetobacter baumannii IS-123]
gi|400392430|gb|EJP59476.1| putative ribonuclease Z [Acinetobacter baumannii Naval-81]
gi|408710280|gb|EKL55510.1| putative ribonuclease Z [Acinetobacter baumannii Naval-13]
gi|410411470|gb|EKP63339.1| putative ribonuclease Z [Acinetobacter baumannii WC-A-694]
Length = 318
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQVLTQLGVSKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|1381661|gb|AAB02732.1| arylsulfatase homolog [Escherichia coli]
Length = 305
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHYKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P NA AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCNAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|329116215|ref|ZP_08244932.1| ribonuclease Z [Streptococcus parauberis NCFD 2020]
gi|326906620|gb|EGE53534.1| ribonuclease Z [Streptococcus parauberis NCFD 2020]
Length = 309
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 49/263 (18%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP +++SR T I+ P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIEKIFITHLHGDHIFGLPGFLSSRAFQASDEQTDIDIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK V+ ++ S ++N + +G+ E + +V K H I GY +
Sbjct: 96 VGIKNYVQTSLKLSGSRLPYQINFHEFDESSLGKILET-DKFIVYTEKLAHTIFCMGYRV 154
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE----VA 250
L ++LK ++ G K+ KSG +I D I +P+ +
Sbjct: 155 VQKDLEGTLDAERLKAAGVNF-GPLFGKI-KSGQDIVLEDGRTIYAKDYISAPKPGKIIT 212
Query: 251 FTGDT----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
GDT SE + +NAD +L+ E+T+ + I A+ HGH+ + + AK
Sbjct: 213 IIGDTRKTPASERL--AKNAD-----VLVHESTYGKGDEKI--ARNHGHSTNMQAAQVAK 263
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQ 329
+ +LL H S+R+ D RQ
Sbjct: 264 NAGVEKLLLNHVSARFLSRDCRQ 286
>gi|218548281|ref|YP_002382072.1| ribonuclease Z [Escherichia fergusonii ATCC 35469]
gi|218355822|emb|CAQ88435.1| binuclear zinc phosphodiesterase [Escherichia fergusonii ATCC
35469]
Length = 320
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 75 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSW--TDYPLD 132
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 133 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQ-PGP 188
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 189 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 243
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+I EAT +MS+E A GH+ + A+ +++TH SSRY
Sbjct: 244 MIHEATL---DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRY 290
>gi|424815675|ref|ZP_18240826.1| ribonuclease Z [Escherichia fergusonii ECD227]
gi|325496695|gb|EGC94554.1| ribonuclease Z [Escherichia fergusonii ECD227]
Length = 305
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + +++P TI+ P I+E VE + S + LD
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMAGSMQPLTIYGPKGIQEFVETTLRLSSSW--TDYPLD 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
++ + GE + +R V + H + G+ I L K LK + G
Sbjct: 118 VIEISAGEILDDGLRK---VTAYPMEHPLECYGFRIEEHEKPGALDAKGLKAAGVQ-PGP 173
Query: 229 QIEKLK-------KSGVEITDI-ILSPE-----VAFTGDT--TSEFMLNPRNADALRAKI 273
+ LK + G +I L+P +A GDT + R+AD +
Sbjct: 174 LFQDLKAGKTVTLEDGRQINGADYLAPATPGKVLAIFGDTAPCDNALELARHAD-----V 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+I EAT +MS+E A GH+ + A+ +++TH SSRY
Sbjct: 229 MIHEATL---DMSMEAKANSRGHSSTCQAATLAREAGVSKLIITHISSRY 275
>gi|218899304|ref|YP_002447715.1| ribonuclease Z [Bacillus cereus G9842]
gi|228902652|ref|ZP_04066803.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|228941303|ref|ZP_04103856.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228967182|ref|ZP_04128218.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228974235|ref|ZP_04134805.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980826|ref|ZP_04141131.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|384188212|ref|YP_005574108.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|402564447|ref|YP_006607171.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|410676530|ref|YP_006928901.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|423385645|ref|ZP_17362901.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|423527999|ref|ZP_17504444.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|423561383|ref|ZP_17537659.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|434377249|ref|YP_006611893.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|452200602|ref|YP_007480683.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|254808608|sp|B7IWQ5.1|RNZ_BACC2 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218543591|gb|ACK95985.1| ribonuclease Z [Bacillus cereus G9842]
gi|228778995|gb|EEM27257.1| Ribonuclease Z [Bacillus thuringiensis Bt407]
gi|228785575|gb|EEM33584.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228792551|gb|EEM40117.1| Ribonuclease Z [Bacillus thuringiensis serovar sotto str. T04001]
gi|228818462|gb|EEM64534.1| Ribonuclease Z [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228857093|gb|EEN01602.1| Ribonuclease Z [Bacillus thuringiensis IBL 4222]
gi|326941921|gb|AEA17817.1| ribonuclease Z [Bacillus thuringiensis serovar chinensis CT-43]
gi|401201640|gb|EJR08505.1| ribonuclease Z [Bacillus cereus MSX-A1]
gi|401635701|gb|EJS53456.1| ribonuclease Z [Bacillus cereus BAG1X1-2]
gi|401793099|gb|AFQ19138.1| ribonuclease Z [Bacillus thuringiensis HD-771]
gi|401875806|gb|AFQ27973.1| ribonuclease Z [Bacillus thuringiensis HD-789]
gi|402451662|gb|EJV83481.1| ribonuclease Z [Bacillus cereus HuB1-1]
gi|409175659|gb|AFV19964.1| ribonuclease Z [Bacillus thuringiensis Bt407]
gi|452105995|gb|AGG02935.1| Ribonuclease Z [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 307
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAEDE---QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|123454390|ref|XP_001314950.1| metallo-beta-lactamase superfamily protein [Trichomonas vaginalis
G3]
gi|121897612|gb|EAY02727.1| metallo-beta-lactamase superfamily protein [Trichomonas vaginalis
G3]
Length = 601
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 50/209 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL-- 176
+FI+H H DH+ G + +R L + IF P +++ + L ++ R GN+ +L
Sbjct: 386 IFISHNHGDHVFGCYELLQTRSLVTDEDVPIFCPDQLRDHLLNLQKVSR-FGNLHFHLLS 444
Query: 177 -DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
+ + G T T IP IH KG
Sbjct: 445 REELTFSTGST-------------TLEFIP----------------VIHCKG-------- 467
Query: 236 SGVEITDIILSPEVAFTGDTT--SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
S + +I V ++GD + EF D +LI E+TF DD ++ A
Sbjct: 468 SHAVVANISGGYRVVYSGDKSFSEEFAKKVGKCD-----LLIHESTFSDD--LVDEATAK 520
Query: 294 GHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
H+ + + IE K K ++LTHFS RY
Sbjct: 521 RHSTMGQAIETGKLCNAKYIVLTHFSQRY 549
>gi|259910153|ref|YP_002650509.1| ribonuclease Z [Erwinia pyrifoliae Ep1/96]
gi|224965775|emb|CAX57307.1| Ribonuclease Z [Erwinia pyrifoliae Ep1/96]
Length = 304
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 49/276 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 96 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRIDEH 152
Query: 212 ----YLLRKKLKKQ--------YIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
L +KL Y +G+ + + D + S +A GDT
Sbjct: 153 DKPGALAAQKLAAHGVPTGPYFYDLKQGRSVTLADGRIINGWDYVGSKIKGRSLAIFGDT 212
Query: 256 TSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNK 311
P A A +++ EAT E+++E A GH+ + + A+ K
Sbjct: 213 A------PTAAAVELAAGVDVMVHEATL---EVAMEEKANARGHSSTVQAAQVAQQSGAK 263
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
+++TH SSRY +R +L ++ A V P TE
Sbjct: 264 KLIITHLSSRY----LRHDCERLLAECRA-VFPHTE 294
>gi|218289402|ref|ZP_03493636.1| ribonuclease Z [Alicyclobacillus acidocaldarius LAA1]
gi|218240508|gb|EED07689.1| ribonuclease Z [Alicyclobacillus acidocaldarius LAA1]
Length = 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ PP I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLRLYGPPGIRAFVRAA 103
Query: 163 FEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--YLLRKKLK 219
++ ++ + E+ + + + +E VR H IPS GY + +L
Sbjct: 104 IDVSQTHLSYEIQFREWTSPEPAPVHE--GLYTVRAALLDHAIPSYGYRVEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ +G Q L K+G ++T D + E +A GDT
Sbjct: 162 ADRLRAEGLQPSPLWAQLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
P A A A L+ EATFLD + A H+ + E A+ K ++LTH S
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHL--ASAFFHSTARQAAEIAREAEAKCLILTHVS 273
Query: 320 SRY 322
+RY
Sbjct: 274 ARY 276
>gi|432489948|ref|ZP_19731822.1| ribonuclease Z [Escherichia coli KTE213]
gi|432839956|ref|ZP_20073442.1| ribonuclease Z [Escherichia coli KTE140]
gi|433203888|ref|ZP_20387663.1| ribonuclease Z [Escherichia coli KTE95]
gi|431020565|gb|ELD33910.1| ribonuclease Z [Escherichia coli KTE213]
gi|431389129|gb|ELG72844.1| ribonuclease Z [Escherichia coli KTE140]
gi|431721067|gb|ELJ85066.1| ribonuclease Z [Escherichia coli KTE95]
Length = 305
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE ++ +R V + H + GY I K L Q + G +
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|403515157|ref|YP_006655977.1| ribonuclease Z [Lactobacillus helveticus R0052]
gi|403080595|gb|AFR22173.1| ribonuclease Z [Lactobacillus helveticus R0052]
Length = 312
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 119/279 (42%), Gaps = 56/279 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTG------ 253
G+ + LL KL K I G + +LK+ V + D + F G
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIP-NGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGR 205
Query: 254 ------DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
DT S + D A +L+ E+TF DE + H H + + I AK
Sbjct: 206 IVTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYHSTSVQAAKI--AKQ 260
Query: 308 IRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLT 346
K + L+H S+RY + KL+S+ + KV P T
Sbjct: 261 ENVKKLCLSHISARY----MGNKAKKLESQ-AKKVFPNT 294
>gi|387813479|ref|YP_005428961.1| binuclear zinc phosphodiesterase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338491|emb|CCG94538.1| binuclear zinc phosphodiesterase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 323
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 87 SIGGHETCVIIPELKCAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
++ G C+ P+ D G R +Q +FITH H DHI GLP + S
Sbjct: 18 NVTGLALCLSGPKPWYLVDCGEGTQHQLMRTRYSVMQLRAIFITHIHGDHIFGLPGLLTS 77
Query: 139 RGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+ +P I PP ++ ++ + E S ++ L+ + + + Y + + V
Sbjct: 78 ASMLGRTEPLDIIAPPQVRRFIDAVIE--NSDSSLSYPLNFINSEAPDFYWQDDHLGVTN 135
Query: 198 FKTHHVIPSQGYVI--YLLRKKLKKQYIHLKG----KQIEKLKKSGVEITD---IILSPE 248
H +P + YV L ++L+K+ + G Q L+K + D ++ S +
Sbjct: 136 VALSHRVPCRAYVFTERNLERQLQKEKLVADGIEPGPQWGDLQKGKDVLLDDGRLLRSDD 195
Query: 249 VAFTGDTTSEFMLNPRN------ADALRAK-ILITEATFLDDEMSIEHAQQHGHTHLSEI 301
T + ++ N DA + +LI EAT+ D ++ H+ ++
Sbjct: 196 YTHIPRTARKIIVGGDNDTPELLKDACQGTHVLIHEATYTQD-VADRVGPWPQHSSAQQV 254
Query: 302 IENAKWIRNKAVLLTHFSSRYH 323
A+ + ++LTHFSSRY
Sbjct: 255 ARFAQATKLPNLVLTHFSSRYQ 276
>gi|313113896|ref|ZP_07799455.1| putative ribonuclease Z [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623775|gb|EFQ07171.1| putative ribonuclease Z [Faecalibacterium cf. prausnitzii KLE1255]
Length = 312
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN-- 171
++ + + +TH H DHI GLP + + G P + P E + ++ R+L
Sbjct: 52 MRADAICLTHYHGDHIFGLPGLLQTLGAQGRTRPLALLGP---EGLPDIWAAVRALTGPL 108
Query: 172 -------VELNLDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-------- 215
V + +ALDV E + +V PF T H + S GY + L R
Sbjct: 109 PYPVKPQVLMPGQPLALDVLSEGWPAGARLV--PFATKHRVKSFGYRLELPRAGKFSPEQ 166
Query: 216 -KKLK---KQYIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTT--SEFMLNPRN 265
+ L +Q+ L+ Q ++ V+ ++ +P V F+GDT ++ +
Sbjct: 167 ARALGVPVQQWKLLQKGQSVAVEGRTVQPAQVLGAPRKGLSVVFSGDTAPCPYYLQAAHD 226
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
AD +LI +AT+ E + A+Q GH+ + A R K + LTH+S
Sbjct: 227 AD-----LLICDATYALPEQE-DQARQWGHSTFEQSASLAAQARAKRLWLTHYS 274
>gi|395510675|ref|XP_003759598.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Sarcophilus
harrisii]
Length = 368
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 126/301 (41%), Gaps = 74/301 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-----KPPTIFVPPSIKEDVEKLFEIHRS----- 168
+FITH H DH GLP + + L + P I+ P ++ + + E+ S
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSSPTASKTPMEIYGPVGLRNFIWRSMELSHSELTFP 117
Query: 169 --------------LGNV--------------ELNLDLVALD-VGETYEMRND--IVVRP 197
G + E+ + LD V +Y + ND +V+
Sbjct: 118 YVVHELVPTEDQCPAGELKDFSYLDGADSPPKEIQGRTILLDSVEGSYVLVNDEQFLVKA 177
Query: 198 FKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQIEKLK-------KSGVEIT-- 241
F+ H IPS G+ + L +KLK + G KLK ++G++++
Sbjct: 178 FRLFHRIPSFGFSVSEKERPGRLNAQKLKDLGVP-PGPAYGKLKNGVTVVLENGIKVSPQ 236
Query: 242 DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
D++ P ++ GD S + + A +LI EAT D+ ++ A+++GH+
Sbjct: 237 DVLEKPVPGRKICILGDC-SGVVGDGGLKLCFEADLLIHEATL--DDAHMDKAKEYGHST 293
Query: 298 LSEIIENAKWIRNKAVLLTHFSSRY---------HIEDIRQAVLKLQSKVSAKVVPLTEG 348
E AK + K ++LTHFS RY I+DIR+ + +S + + V L E
Sbjct: 294 PRMAAEFAKLCKVKRLVLTHFSQRYKPPLLSEEGEIDDIRELKKQAESVLDFQEVTLAED 353
Query: 349 F 349
F
Sbjct: 354 F 354
>gi|313205576|ref|YP_004044753.1| rnase z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|386320451|ref|YP_006016613.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|416111414|ref|ZP_11592627.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|442315253|ref|YP_007356556.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
gi|312444892|gb|ADQ81247.1| RNAse Z [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022694|gb|EFT35719.1| ribonuclease Z [Riemerella anatipestifer RA-YM]
gi|325334994|gb|ADZ11268.1| Metal-dependent hydrolases of the beta-lactamase superfamily III
[Riemerella anatipestifer RA-GD]
gi|441484176|gb|AGC40862.1| hypothetical protein G148_1558 [Riemerella anatipestifer RA-CH-2]
Length = 304
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 29/237 (12%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIH 166
R + + N +FI+H H DH GLP +AS L + P I+ P I+E +E +F I
Sbjct: 47 RAKAKFSKINHIFISHLHGDHCFGLPGLIASFRLLGRETPLHIYGPKGIQEMLETIFRIT 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYLLRKKLKKQYIH 224
+ E+ L+ ++ ++ D V F +H I G YL R+K K+++++
Sbjct: 107 ETQRGFEVIYH--ELEGNQSVKIYEDHKVEVFTIPLNHRIYCNG---YLFREKPKERHLN 161
Query: 225 L----KGKQIEKLK----KSGVEIT---DIILSPEVAFT---GDTTSEFMLNPRNADAL- 269
+ K +IE K G + T +L E T + F + R +++
Sbjct: 162 MEEISKYPEIETCDYHNLKKGKDFTLSDGFVLKNEALTTPPQPSVSYAFCSDTRYLESIV 221
Query: 270 ----RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L EATFL D E A GHT E A+ K ++L HFS+RY
Sbjct: 222 PIIKGVDVLYHEATFLHDLK--EMADYTGHTTALEAATIAQKAGVKKLILGHFSNRY 276
>gi|448664433|ref|ZP_21684236.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
gi|445775078|gb|EMA26092.1| ribonuclease Z [Haloarcula amylolytica JCM 13557]
Length = 311
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 116/275 (42%), Gaps = 37/275 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + +P + P
Sbjct: 35 FDCGEGTQRQMMRYGTGFAIDHLFVTHLHGDHVLGIPGLLQTWDFNERERPIAVHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R + +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRPEYEIRAIETAHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + VE + PE +TGDT
Sbjct: 153 RKGKFDREKAEEKFGIPPGPKYSKLHRGEPVEHEGETIQPEAVVGPPRPGRRFVYTGDTL 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
E ++ A +L+ +ATF +D E A+ H+ E + A+ + L
Sbjct: 213 PKESVIEASEG----ADLLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTLAL 266
Query: 316 THFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
TH S+RY Q V + + +VV +G +
Sbjct: 267 THISTRY-AASADQLVDEARDAFDGEVVLAEDGME 300
>gi|381210249|ref|ZP_09917320.1| ribonuclease Z [Lentibacillus sp. Grbi]
Length = 307
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 36/232 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP + SR G NL T++ P IK +E + S +
Sbjct: 59 IFITHMHGDHIFGLPGLLGSRSFQGGDNLL--TVYGPEGIKNYIETSLAV--SGTTLTYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L +V G +E V + H IPS G+ I LL +KLK + G
Sbjct: 115 LSIVEFTEGVLFE-NEQFTVSCKELEHGIPSYGFRISEKDKPGRLLVEKLKDTGVE-PGP 172
Query: 229 QIEKLKKSGVEITDI--------ILSPE-----VAFTGDTTSEFMLNPRNADALR-AKIL 274
+++K++ V TD L P V GDT S +N ++ + +L
Sbjct: 173 IYQQIKENDVVQTDDGRLIHRDEYLGPPKKGRVVTIMGDTRSP----DKNKSFIQDSDVL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+ EATF ++ ++ A H T + + A+ K ++LTH SSRY D
Sbjct: 229 VHEATFGHEKETLAKAYFHSTTKQAATL--ARNSNTKKLILTHISSRYQQGD 278
>gi|352681284|ref|YP_004891808.1| metallo-beta-lactamase family protein [Thermoproteus tenax Kra 1]
gi|350274083|emb|CCC80728.1| metallo-beta-lactamase family protein [Thermoproteus tenax Kra 1]
Length = 249
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+ ++VFITH H+DH GLP + + + + P P I ED K H +L +
Sbjct: 52 EVDYVFITHSHMDHFLGLPEMLFQAHIEDRRKPIYIFAPKIVEDTLKAAAPH-TLRGLRY 110
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
+ L + G E R+ VV HH ++ K
Sbjct: 111 EVHLRRISEGALLEGRSLRVVSTKACHHT-----------------------AEEAYAFK 147
Query: 235 KSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294
S DI ++ FTGDT+ R A A +L+ EAT + M I ++G
Sbjct: 148 VSA----DI----DIVFTGDTSPGCETIERLAQG--ADVLVHEATCNEQYMDI--CVRYG 195
Query: 295 HTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
HT + I+ A+ + + ++LTH +++
Sbjct: 196 HTTTLQAIDVARRVGSNTLILTHIDEKFN 224
>gi|223933275|ref|ZP_03625265.1| ribonuclease Z [Streptococcus suis 89/1591]
gi|302024048|ref|ZP_07249259.1| ribonuclease Z [Streptococcus suis 05HAS68]
gi|330832493|ref|YP_004401318.1| ribonuclease Z [Streptococcus suis ST3]
gi|386583751|ref|YP_006080154.1| ribonuclease Z [Streptococcus suis D9]
gi|223898089|gb|EEF64460.1| ribonuclease Z [Streptococcus suis 89/1591]
gi|329306716|gb|AEB81132.1| ribonuclease Z [Streptococcus suis ST3]
gi|353735897|gb|AER16906.1| ribonuclease Z [Streptococcus suis D9]
Length = 309
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 29/234 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P I+ V ++ + ++
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQSSDEQTDIDIYGPVGIRSFVLASLKVSGTRLPYRIH 118
Query: 176 LDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLK----GK 228
+D VG+ E + V K H IP GY + L L + + G
Sbjct: 119 FHEFDVDTVGQVLET-DKFTVFAEKLDHTIPCVGYRVIQKDLEGTLDAEALRAAGVPFGP 177
Query: 229 QIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILI 275
K+K + G EI +D I P V GDT + A+ A +L+
Sbjct: 178 LFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTRK---CHASVRLAVNADVLV 234
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
EAT+ + I A++HGH+ E + AK K +LL H S R+ +DI Q
Sbjct: 235 HEATYGKGDEKI--ARKHGHSTNMEAAQVAKDAGVKQLLLNHISPRFLSKDISQ 286
>gi|452856153|ref|YP_007497836.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080413|emb|CCP22176.1| ribonuclease Z [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 308
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + TI+ P IK +E + + ++ L
Sbjct: 59 IFITHLHGDHVYGLPGLLGSRSFQGGEEELTIYGPKGIKAFIETSLNV--TATHLTYPLT 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+ ++ G +E +V H + + GY + L +LK+ I G
Sbjct: 117 VHEIEEGTVFE-DEQFIVTAVSVIHGVEAFGYRVQEKDIPGALQAGRLKEMNIP-PGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT-TSEFMLN-PRNADALRAKIL 274
+K+ K+G +T D + P+ VAF+GDT SE + NAD +L
Sbjct: 175 QKI-KNGETVTLDDGRIINGRDFLEPPKKGRIVAFSGDTRVSERVTELAHNAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
+ EATF ++ + H H T + + AK K ++LTH S+RY E
Sbjct: 229 VHEATFAKEDAKLAHNYYHATT--EQAAQTAKKAGAKQLILTHISARYQGE 277
>gi|343197782|pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1).
gi|343197783|pdb|3ZWF|B Chain B, Crystal Structure Of Human Trnase Z, Short Form (Elac1)
Length = 368
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 56 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 115
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 116 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 175
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 176 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 235
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 236 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 292
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 293 QMAATFAKLCRAKRLVLTHFSQRY 316
>gi|429205392|ref|ZP_19196669.1| ribonuclease Z [Lactobacillus saerimneri 30a]
gi|428146464|gb|EKW98703.1| ribonuclease Z [Lactobacillus saerimneri 30a]
Length = 310
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 120/281 (42%), Gaps = 56/281 (19%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN---LKPPTIFVP 152
FD+G R R + N +FITH H DHI GLP +++SR + ++P TI+ P
Sbjct: 36 FDVGEGTQHQILRTNIRPRKINKIFITHLHGDHIFGLPGFLSSRSFQSGDHIEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRS-----LGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ +S L VE+ + + LD E +++ + H I
Sbjct: 96 KGIEQFVKTSLQVSQSKLSYPLNFVEIKNEGLLLD-DEHFQVYGRFL------DHRIQCI 148
Query: 208 GYVIY-------LLRKKLKKQYIHLKGKQIEKLKKSGVEIT----------DIILSPE-- 248
GY I LL KL Q + + + K+G +T D I P+
Sbjct: 149 GYRIVEKDRPGELLVDKL--QALGVPSGPVYGQLKAGATVTLADGRTINGQDFIGKPKPG 206
Query: 249 --VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
V GDT + D A +L+ E+TF E + H H + I
Sbjct: 207 RIVTILGDTRQVPAIFDLAKD---ANVLVHESTFGKGEARLAHNYYHSTCQQAATIAAKA 263
Query: 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
+ + + LTH S+RY + +A KL++ + K+ P T+
Sbjct: 264 GVHH--LYLTHISARY----VGKAARKLEND-ARKIFPATK 297
>gi|419923065|ref|ZP_14441037.1| ribonuclease Z [Escherichia coli 541-15]
gi|388394639|gb|EIL55901.1| ribonuclease Z [Escherichia coli 541-15]
Length = 311
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|8922122|ref|NP_061166.1| zinc phosphodiesterase ELAC protein 1 [Homo sapiens]
gi|41017799|sp|Q9H777.2|RNZ1_HUMAN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=Deleted in Ma29; AltName: Full=ElaC homolog protein
1; AltName: Full=Ribonuclease Z 1; Short=RNase Z 1;
AltName: Full=tRNA 3 endonuclease 1; AltName:
Full=tRNase Z 1
gi|10946491|gb|AAG24917.1|AF308695_1 ELAC1 [Homo sapiens]
gi|8574425|dbj|BAA96799.1| D29 [Homo sapiens]
gi|15779120|gb|AAH14624.1| ElaC homolog 1 (E. coli) [Homo sapiens]
gi|119583388|gb|EAW62984.1| elaC homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
gi|123985170|gb|ABM83711.1| elaC homolog 1 (E. coli) [synthetic construct]
gi|123998805|gb|ABM87031.1| elaC homolog 1 (E. coli) [synthetic construct]
Length = 363
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|418032447|ref|ZP_12670930.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SC-8]
gi|351471310|gb|EHA31431.1| ribonuclease Z [Bacillus subtilis subsp. subtilis str. SC-8]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 33/246 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT--HLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H + + GY + L+ + K+ G +
Sbjct: 117 IQEIEEGIVFE-DDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQ 175
Query: 232 KLKKS---GVEITDIILSPE----------VAFTGDTTSEFMLNPRNADALRAKILITEA 278
K+KK +E II E V F+GDT L D +L+ EA
Sbjct: 176 KIKKGETVTLEDGRIINGNEFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVHEA 232
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKV 338
TF ++ + + H T + + AK R K ++LTH S+RY + A L+LQ K
Sbjct: 233 TFAKEDRKLAYDYYHSTTEQAAV--TAKEARAKQLILTHISARYQGD----ASLELQ-KE 285
Query: 339 SAKVVP 344
+ V P
Sbjct: 286 AVDVFP 291
>gi|49478558|ref|YP_038206.1| ribonuclease Z [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|118479338|ref|YP_896489.1| ribonuclease Z [Bacillus thuringiensis str. Al Hakam]
gi|196038730|ref|ZP_03106038.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|196047233|ref|ZP_03114449.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|225866126|ref|YP_002751504.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228916781|ref|ZP_04080346.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229093204|ref|ZP_04224322.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|229186388|ref|ZP_04313552.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|301055637|ref|YP_003793848.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|376268042|ref|YP_005120754.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|423550109|ref|ZP_17526436.1| ribonuclease Z [Bacillus cereus ISP3191]
gi|56749430|sp|Q6HE20.1|RNZ_BACHK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166991094|sp|A0RID9.1|RNZ_BACAH RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808609|sp|C1ER14.1|RNZ_BACC3 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|49330114|gb|AAT60760.1| possible metallo-beta-lactamase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418563|gb|ABK86982.1| RNAse Z [Bacillus thuringiensis str. Al Hakam]
gi|196021982|gb|EDX60673.1| ribonuclease Z [Bacillus cereus 03BB108]
gi|196030453|gb|EDX69052.1| ribonuclease Z [Bacillus cereus NVH0597-99]
gi|225787461|gb|ACO27678.1| ribonuclease Z [Bacillus cereus 03BB102]
gi|228597015|gb|EEK54671.1| Ribonuclease Z [Bacillus cereus BGSC 6E1]
gi|228690178|gb|EEL43972.1| Ribonuclease Z [Bacillus cereus Rock3-42]
gi|228842968|gb|EEM88051.1| Ribonuclease Z [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|300377806|gb|ADK06710.1| ribonuclease Z [Bacillus cereus biovar anthracis str. CI]
gi|364513842|gb|AEW57241.1| Ribonuclease Z [Bacillus cereus F837/76]
gi|401189725|gb|EJQ96775.1| ribonuclease Z [Bacillus cereus ISP3191]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGNDFIGPPQKGRVITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|423470363|ref|ZP_17447107.1| ribonuclease Z [Bacillus cereus BAG6O-2]
gi|423558290|ref|ZP_17534592.1| ribonuclease Z [Bacillus cereus MC67]
gi|401191558|gb|EJQ98580.1| ribonuclease Z [Bacillus cereus MC67]
gi|402436492|gb|EJV68522.1| ribonuclease Z [Bacillus cereus BAG6O-2]
Length = 305
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 48/250 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI----RNKAVLLTHFSSRYHIEDIR 328
+L+ EATF ++ +Q H + E A I K ++LTH SSRY D
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQ-GDTY 280
Query: 329 QAVLKLQSKV 338
+ +LK K+
Sbjct: 281 KELLKEARKL 290
>gi|331673779|ref|ZP_08374542.1| ribonuclease Z [Escherichia coli TA280]
gi|331069052|gb|EGI40444.1| ribonuclease Z [Escherichia coli TA280]
Length = 311
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 111/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT+ P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTS------PCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|448683879|ref|ZP_21692499.1| ribonuclease Z [Haloarcula japonica DSM 6131]
gi|445783452|gb|EMA34281.1| ribonuclease Z [Haloarcula japonica DSM 6131]
Length = 309
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 36/247 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + I P
Sbjct: 33 FDCGEGTQRQMMRYGTGFAIDHLFVTHRHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 92
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R++ +R +T H S GYV+
Sbjct: 93 RGNIKQLIQANGTTPSFPVRVNEVS--AGDVVLDRSEYEIRAIETAHRCASVGYVLDEDD 150
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKL-KKSGVEITDIILSPEV-----------AFTGDTT 256
R+K + ++ G + KL + VE + PE +TGDT
Sbjct: 151 RKGKFDREKAEAEFGIPPGPKYSKLHRGEAVEHEGETIQPEAVVGPPRPGRRFVYTGDTL 210
Query: 257 -SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
+E ++ A +L+ +ATF +D E A+ H+ E + A+ + L
Sbjct: 211 PAESVIEGSEG----ADLLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTLAL 264
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 265 THISTRY 271
>gi|422854499|ref|ZP_16901163.1| ribonuclease Z [Streptococcus sanguinis SK160]
gi|325695994|gb|EGD37885.1| ribonuclease Z [Streptococcus sanguinis SK160]
Length = 309
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT + A+ A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRK---TSASVRLAVAADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKCLLLNHISARFLAKDISQ 286
>gi|222157024|ref|YP_002557163.1| ribonuclease Z [Escherichia coli LF82]
gi|387617629|ref|YP_006120651.1| ribonuclease Z [Escherichia coli O83:H1 str. NRG 857C]
gi|222034029|emb|CAP76770.1| ribonuclease Z [Escherichia coli LF82]
gi|312946890|gb|ADR27717.1| ribonuclease Z [Escherichia coli O83:H1 str. NRG 857C]
Length = 305
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAVPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P+TE
Sbjct: 286 ECRS-----IFPVTE 295
>gi|410562984|pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 35/247 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT--HLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H + + GY + L+ + K+ G +
Sbjct: 117 IQEIEEGIVFE-DDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQ 175
Query: 232 KLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
K+KK G +T D + P+ V F+GDT L D +++ E
Sbjct: 176 KIKK-GETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVMVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF ++ + + H T + + AK R K ++LTH S+RY + A L+LQ K
Sbjct: 232 ATFAKEDRKLAYDYYHSTTEQAAV--TAKEARAKQLILTHISARYQGD----ASLELQ-K 284
Query: 338 VSAKVVP 344
+ V P
Sbjct: 285 EAVDVFP 291
>gi|423452551|ref|ZP_17429404.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
gi|401140189|gb|EJQ47746.1| ribonuclease Z [Bacillus cereus BAG5X1-1]
Length = 305
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 48/250 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI----RNKAVLLTHFSSRYHIEDIR 328
+L+ EATF ++ +Q H + E A I K ++LTH SSRY D
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQ-GDTY 280
Query: 329 QAVLKLQSKV 338
+ +LK K+
Sbjct: 281 KELLKEARKL 290
>gi|260101648|ref|ZP_05751885.1| ribonuclease Z [Lactobacillus helveticus DSM 20075]
gi|417007582|ref|ZP_11945387.1| ribonuclease Z [Lactobacillus helveticus MTCC 5463]
gi|260084549|gb|EEW68669.1| ribonuclease Z [Lactobacillus helveticus DSM 20075]
gi|328467455|gb|EGF38530.1| ribonuclease Z [Lactobacillus helveticus MTCC 5463]
Length = 312
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 119/279 (42%), Gaps = 56/279 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRLRKVTKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRS-----LGNVELNL-DLVALDVG-ETYEMRNDIVVRPFKTHHVIPSQ 207
I++ V+ ++ R+ + VEL L+ D G Y R D H IPS
Sbjct: 96 IEQFVKVSLKVSRTKVSYPIKFVELTKPGLICEDKGFRVYTDRLD---------HRIPSF 146
Query: 208 GYVIY-------LLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTG------ 253
G+ + LL KL K I G + +LK+ V + D + F G
Sbjct: 147 GFRVVEDSHPGELLIDKLAKYNIP-NGPLLGQLKRGEQVTLADGTVLNGKDFLGAEKPGR 205
Query: 254 ------DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKW 307
DT S + D A +L+ E+TF DE + H H + + I AK
Sbjct: 206 IVTIIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYHSTSVQAAKI--AKQ 260
Query: 308 IRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLT 346
K + L+H S+RY + KL+S+ + KV P T
Sbjct: 261 ENVKKLCLSHISARY----MGNKAKKLESQ-AKKVFPNT 294
>gi|423522019|ref|ZP_17498492.1| ribonuclease Z [Bacillus cereus HuA4-10]
gi|401176681|gb|EJQ83876.1| ribonuclease Z [Bacillus cereus HuA4-10]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI----RNKAVLLTHFSSRYH 323
+L+ EATF ++ +Q H + E A I K ++LTH SSRY
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQ 276
>gi|257416213|ref|ZP_05593207.1| ribonuclease Z [Enterococcus faecalis ARO1/DG]
gi|257158041|gb|EEU88001.1| ribonuclease Z [Enterococcus faecalis ARO1/DG]
Length = 313
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 39/237 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
+FITH H DHI GLP ++SR +P I+ P I + V+ + +S L +
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLEIYGPVGIADFVKTSLRVSQSRLSYPLKFI 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYI-- 223
EL + + + + +R +I+ H I S GY I L +KL+ I
Sbjct: 119 ELTKENDVIFKDKQFTVRCNIL------DHGITSFGYRIEEAAHEGELQVEKLQALGIPS 172
Query: 224 ---HLKGKQIEKLKKSGVEITDIILSPE------VAFTGDTTSEFMLNPRNADAL--RAK 272
+ K K+ E + G EI E V GDT +N+ L RA
Sbjct: 173 GPLYGKLKRGETIVFDGQEINGQAFVGERKPGRIVTILGDTR-----KTKNSVTLAQRAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+L+ E+TF DE + A+ + H+ + E AK + K ++LTH S+RY ++ Q
Sbjct: 228 VLVHESTFNKDEAKM--AKAYFHSTSQQAAEVAKEAQVKQLILTHISARYLTKEAYQ 282
>gi|30022222|ref|NP_833853.1| ribonuclease Z [Bacillus cereus ATCC 14579]
gi|228922891|ref|ZP_04086189.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228960410|ref|ZP_04122062.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229111615|ref|ZP_04241166.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|229129421|ref|ZP_04258392.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|229146717|ref|ZP_04275083.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|229152342|ref|ZP_04280535.1| Ribonuclease Z [Bacillus cereus m1550]
gi|296504633|ref|YP_003666333.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|423582352|ref|ZP_17558463.1| ribonuclease Z [Bacillus cereus VD014]
gi|423585375|ref|ZP_17561462.1| ribonuclease Z [Bacillus cereus VD045]
gi|423630867|ref|ZP_17606614.1| ribonuclease Z [Bacillus cereus VD154]
gi|423635031|ref|ZP_17610684.1| ribonuclease Z [Bacillus cereus VD156]
gi|423640775|ref|ZP_17616393.1| ribonuclease Z [Bacillus cereus VD166]
gi|423650007|ref|ZP_17625577.1| ribonuclease Z [Bacillus cereus VD169]
gi|423657070|ref|ZP_17632369.1| ribonuclease Z [Bacillus cereus VD200]
gi|41017542|sp|Q818V3.1|RNZ_BACCR RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|29897779|gb|AAP11054.1| Metal-dependent hydrolase [Bacillus cereus ATCC 14579]
gi|228631304|gb|EEK87940.1| Ribonuclease Z [Bacillus cereus m1550]
gi|228636737|gb|EEK93201.1| Ribonuclease Z [Bacillus cereus BDRD-ST24]
gi|228654026|gb|EEL09893.1| Ribonuclease Z [Bacillus cereus BDRD-Cer4]
gi|228671997|gb|EEL27290.1| Ribonuclease Z [Bacillus cereus Rock1-15]
gi|228799271|gb|EEM46236.1| Ribonuclease Z [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228836946|gb|EEM82289.1| Ribonuclease Z [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|296325685|gb|ADH08613.1| ribonuclease Z [Bacillus thuringiensis BMB171]
gi|401213231|gb|EJR19972.1| ribonuclease Z [Bacillus cereus VD014]
gi|401234018|gb|EJR40504.1| ribonuclease Z [Bacillus cereus VD045]
gi|401264234|gb|EJR70346.1| ribonuclease Z [Bacillus cereus VD154]
gi|401279017|gb|EJR84947.1| ribonuclease Z [Bacillus cereus VD156]
gi|401279836|gb|EJR85758.1| ribonuclease Z [Bacillus cereus VD166]
gi|401283287|gb|EJR89184.1| ribonuclease Z [Bacillus cereus VD169]
gi|401289813|gb|EJR95517.1| ribonuclease Z [Bacillus cereus VD200]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|26990736|ref|NP_746161.1| ribonuclease Z [Pseudomonas putida KT2440]
gi|41017548|sp|Q88FQ4.1|RNZ_PSEPK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|24985732|gb|AAN69625.1|AE016596_3 metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
Length = 319
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 38/243 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P + P++ D + + + L +L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLEVILPAVLHDWVRQGLV---ASDTFLPFEL 114
Query: 179 VALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK----- 232
L V E R++ + V + H +PS G+V + + + L + I +
Sbjct: 115 RLLPVEELIAWRSETLQVTTVQLSHRVPSVGFVFTEINPEPRLDIQRLDAEGITRGPLWG 174
Query: 233 -LKKSGVEIT--------DIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILITEA 278
L K G+ +T + L P V GD +L A A A +L+ EA
Sbjct: 175 ELAK-GLTVTYDGQLLNGNDYLRPSRPPRRVIVCGDNDKPELL---AAVARGADVLVHEA 230
Query: 279 TFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY--------HIEDIRQ 329
TF + +E GH+ +E+ A+ + ++LTHFS+RY HI+++R
Sbjct: 231 TF--TQAVVERTGGTFGHSTAAEVARFAEAAGVRNLVLTHFSARYQNDPRRSPHIDNVRD 288
Query: 330 AVL 332
L
Sbjct: 289 EAL 291
>gi|422859893|ref|ZP_16906537.1| ribonuclease Z [Streptococcus sanguinis SK330]
gi|327470776|gb|EGF16232.1| ribonuclease Z [Streptococcus sanguinis SK330]
Length = 309
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 100/237 (42%), Gaps = 35/237 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLAIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNAD-ALRAK 272
G+ I + + D I +P +A GDT P + A+ A
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRK----TPASVRLAVAAD 231
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 232 VLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|440290255|gb|ELP83681.1| zinc phosphodiesterase, putative [Entamoeba invadens IP1]
Length = 267
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 44/263 (16%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G T + Q +FITH H+DH+GG+ ++ S + TI P
Sbjct: 36 FDCGDGVTYLLAQMKVPAQRIRILFITHSHIDHVGGIVSFIHSVVFATPQQLTIVAPKGT 95
Query: 156 KEDVEKLFEIHR-SLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
KE E+ F+ R +D ++ + D P +P + L
Sbjct: 96 KELAEQAFKFSREEFPKTITFIDYDDVNPTKVSYKNCDFTCVPIPHMPDVPGHAILCQL- 154
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA----DALR 270
H + K+ + L TGDTTS ++P + ++
Sbjct: 155 ---------HYERKEDKTL----------------VVTGDTTS---MSPMTTYILENHIQ 186
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ E TF DD++ + ++Q GH+ + E K K +L HFSSRY +++
Sbjct: 187 VNVIVHECTF-DDDLK-DKSKQWGHSCPEIVSEEIKKFVPKKCILHHFSSRYSQSYVQRM 244
Query: 331 VLKLQSKVSAKVVPLTEGFKSVY 353
K+++ + +G V+
Sbjct: 245 AEKVKNTTGVETFVAKDGMIVVF 267
>gi|228909974|ref|ZP_04073795.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
gi|228849809|gb|EEM94642.1| Ribonuclease Z [Bacillus thuringiensis IBL 200]
Length = 307
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAADE---QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|432602825|ref|ZP_19839069.1| ribonuclease Z [Escherichia coli KTE66]
gi|432719392|ref|ZP_19954361.1| ribonuclease Z [Escherichia coli KTE9]
gi|431141399|gb|ELE43164.1| ribonuclease Z [Escherichia coli KTE66]
gi|431263204|gb|ELF55193.1| ribonuclease Z [Escherichia coli KTE9]
Length = 305
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|402903136|ref|XP_003914435.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Papio anubis]
Length = 363
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFILRTMELSHTELVFR 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|422823341|ref|ZP_16871529.1| ribonuclease Z [Streptococcus sanguinis SK405]
gi|422826572|ref|ZP_16874751.1| ribonuclease Z [Streptococcus sanguinis SK678]
gi|422862261|ref|ZP_16908893.1| ribonuclease Z [Streptococcus sanguinis SK408]
gi|422865249|ref|ZP_16911874.1| ribonuclease Z [Streptococcus sanguinis SK1058]
gi|324993991|gb|EGC25910.1| ribonuclease Z [Streptococcus sanguinis SK405]
gi|324994690|gb|EGC26603.1| ribonuclease Z [Streptococcus sanguinis SK678]
gi|327474856|gb|EGF20261.1| ribonuclease Z [Streptococcus sanguinis SK408]
gi|327489981|gb|EGF21770.1| ribonuclease Z [Streptococcus sanguinis SK1058]
Length = 309
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 KGKQIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNADALRAK 272
G K+K + G++I D I +P +A GDT + A+ A
Sbjct: 176 -GPLFGKVKNGQDIVLEDGIKIIAADYISAPRPGKTIAILGDTRKT---SASVRLAVAAD 231
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 232 VLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|296222673|ref|XP_002757289.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Callithrix
jacchus]
Length = 363
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 67/266 (25%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--------- 164
+FITH H DH GLP + + S + + +P I+ P +++ + + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSIVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 165 --IHRSLGNV----------------------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+H + V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTVDQCPAEELKEFTHVNRAGSPSKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV ++ D
Sbjct: 178 FRLFHRIPSFGFSVLEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTVSPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT-- 296
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDEGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRY 322
H++ + AK R K ++LTHFS RY
Sbjct: 295 HMAAMF--AKMCRAKRLVLTHFSQRY 318
>gi|387873158|ref|YP_005804546.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
gi|283480259|emb|CAY76175.1| ribonuclease Z [Erwinia pyrifoliae DSM 12163]
Length = 318
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 115/276 (41%), Gaps = 49/276 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 50 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 109
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 110 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRIDEH 166
Query: 212 ----YLLRKKLKKQ--------YIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
L +KL Y +G+ + + D + S +A GDT
Sbjct: 167 DKPGALAAQKLAAHGVPTGPYFYDLKQGRSVTLADGRIINGWDYVGSKIKGRSLAIFGDT 226
Query: 256 TSEFMLNPRNAD---ALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNK 311
P A A +++ EAT E+++E A GH+ + + A+ K
Sbjct: 227 A------PTAAAVELAAGVDVMVHEATL---EVAMEEKANARGHSSTVQAAQVAQQSGAK 277
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
+++TH SSRY +R +L ++ A V P TE
Sbjct: 278 KLIITHLSSRY----LRHDCERLLAECRA-VFPHTE 308
>gi|417549979|ref|ZP_12201059.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|417566530|ref|ZP_12217402.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|421806928|ref|ZP_16242790.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
gi|395552202|gb|EJG18210.1| putative ribonuclease Z [Acinetobacter baumannii OIFC143]
gi|400387947|gb|EJP51020.1| putative ribonuclease Z [Acinetobacter baumannii Naval-18]
gi|410417471|gb|EKP69241.1| putative ribonuclease Z [Acinetobacter baumannii OIFC035]
Length = 324
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL +
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGV 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L DA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELL----VDACKD 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A++LI E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA
Sbjct: 226 AQLLIHESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQA 284
Query: 331 V 331
+
Sbjct: 285 I 285
>gi|154483096|ref|ZP_02025544.1| hypothetical protein EUBVEN_00797 [Eubacterium ventriosum ATCC
27560]
gi|149735904|gb|EDM51790.1| ribonuclease Z [Eubacterium ventriosum ATCC 27560]
Length = 302
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
+ + ITH H DHI GLP + + G +P T+ P + + V L I L +
Sbjct: 55 DVICITHYHADHISGLPGLLLTMGNAERTEPLTMIGPRGLTKVVNALRTIAPEL---PFD 111
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYIHLKGKQ 229
++ + L GE D ++ F+ H I GY I + R + KK I + +
Sbjct: 112 INFIELTEGEQTLEFEDFRIKAFRVKHNIVCYGYSIEIDRGGKFNPEAAKKLNIPI--RS 169
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
KL+K VE+ + +P+ V +T DT P A+A + A + I
Sbjct: 170 WGKLQKGETVEVDGVTFTPDMVVGAPRKGLKVTYTTDTRPV----PVIAEAAKGADLFIC 225
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
E + + + + A++H H E + AK + K + LTHFS
Sbjct: 226 EGMYGEPDKDAK-AREHKHMTFKEAAKIAKEAQPKEMWLTHFS 267
>gi|448375342|ref|ZP_21558908.1| ribonuclease Z [Halovivax asiaticus JCM 14624]
gi|445658896|gb|ELZ11709.1| ribonuclease Z [Halovivax asiaticus JCM 14624]
Length = 311
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 50/254 (19%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + I P
Sbjct: 35 FDAGEGTQRQLMRYGTGFDISELFVTHAHGDHVLGIPGLLQTMDFNDRERKLRIHAPRGT 94
Query: 156 KEDVEKL-FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ V +L F + ++ +++ +D G+ ++ VR F+T H S GY L+
Sbjct: 95 RRQVRELAFSLD---AHISFPVEITDVDDGDVVYHGDEYEVRAFRTDHDTRSVGYA--LV 149
Query: 215 RKKLKKQYIHLK--------GKQIEKL-KKSGVEITD-IILSPE-----------VAFTG 253
+ K ++ + G + +L + + +E+ D ++ PE + +TG
Sbjct: 150 EDERKGRFDRERAEELGVPVGPKFSQLHEGNSIELDDGTVVRPEQVVGEPRPGRSLVYTG 209
Query: 254 DT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
DT T E P +LI +ATF DD E A H+ + E A
Sbjct: 210 DTRPTARTVEIADEP--------DLLIHDATFADDRA--ERAADTAHSTARQAAEIANRT 259
Query: 309 RNKAVLLTHFSSRY 322
K + L H SSRY
Sbjct: 260 GAKQLALVHLSSRY 273
>gi|432543882|ref|ZP_19780725.1| ribonuclease Z [Escherichia coli KTE236]
gi|432549372|ref|ZP_19786140.1| ribonuclease Z [Escherichia coli KTE237]
gi|432622522|ref|ZP_19858553.1| ribonuclease Z [Escherichia coli KTE76]
gi|432816025|ref|ZP_20049809.1| ribonuclease Z [Escherichia coli KTE115]
gi|431074292|gb|ELD81856.1| ribonuclease Z [Escherichia coli KTE236]
gi|431079650|gb|ELD86604.1| ribonuclease Z [Escherichia coli KTE237]
gi|431159322|gb|ELE59879.1| ribonuclease Z [Escherichia coli KTE76]
gi|431364249|gb|ELG50793.1| ribonuclease Z [Escherichia coli KTE115]
Length = 305
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETTLRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|365959155|ref|YP_004940722.1| ribonuclease Z [Flavobacterium columnare ATCC 49512]
gi|365735836|gb|AEW84929.1| ribonuclease Z [Flavobacterium columnare ATCC 49512]
Length = 301
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 30/228 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GL +++ L N P TI+ P IKE ++ + S ELN
Sbjct: 54 NQIFISHLHGDHFYGLIGLISTFSLLNRHNPLTIYGPVGIKEVIKLQLRLANSWPQYELN 113
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQ---IEK 232
+ E ++VR H + + G +L +K K++ +++ Q IE
Sbjct: 114 FVELKSKKSEIIYEDKKVIVRTIPLKHRVYTNG---FLFTEKTKERKLNIDKVQEYGIES 170
Query: 233 LK----KSGVEIT--------DIILS------PEVAFTGDTTSEFMLNPRNADALRAKIL 274
K+G +IT + ILS AF DT + + P D +IL
Sbjct: 171 CYFQNIKNGRDITLDDGRVLPNHILSFDPPKPKSYAFCSDTQYDESIVPLIKD---VQIL 227
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TFL+ E + H + +I AK + ++L H+S+RY
Sbjct: 228 YHESTFLNAEEHLAEKTMHSTAKQAALI--AKQANVEKLILGHYSTRY 273
>gi|296111867|ref|YP_003622249.1| metal-dependent hydrolase of the beta-lactamase superfamily III()
[Leuconostoc kimchii IMSNU 11154]
gi|295833399|gb|ADG41280.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc kimchii IMSNU 11154]
Length = 314
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 38/250 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+KE V+ I + + + L G +E + V+ K H I + GY +
Sbjct: 96 KGVKEYVQTALRISET--RLSYPIVYAELKEGVIFEDKTFRVIGA-KMRHRIETWGYRVE 152
Query: 212 ------YLLRKKLKKQYI-------HLKGKQIEKLKKSGV-EITDIILSPEVAFTGDTTS 257
LL KL+++ I LK ++ L V + D I + +
Sbjct: 153 EKDHPGELLVDKLRQENIPSGPIFGQLKAGKVVTLPDGRVLDGQDYIGASQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
F+L+ R D A A +L+ E+T+ E + A+ H H+ A+
Sbjct: 209 TFILDTRPNDNVEILADHADVLVHESTYGAGEEEAKMARAHAHSTSVTAANVAQRAHVDK 268
Query: 313 VLLTHFSSRY 322
++LTH S+RY
Sbjct: 269 LVLTHLSARY 278
>gi|193077819|gb|ABO12693.2| Metal-dependent Hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ATCC 17978]
Length = 324
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLYLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------------ 221
+DV E ++ ++ +V+ H +PS + IY+ ++KKL +
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGVPQGDM 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR-AKILI 275
+ HLK G IE + ++ D I GD +L DA + A++LI
Sbjct: 176 WGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELL----VDACKDAQLLI 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 231 HESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|402573323|ref|YP_006622666.1| RNAse Z [Desulfosporosinus meridiei DSM 13257]
gi|402254520|gb|AFQ44795.1| RNAse Z [Desulfosporosinus meridiei DSM 13257]
Length = 303
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 100/236 (42%), Gaps = 36/236 (15%)
Query: 110 PTRAIQQNF-----VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLF 163
P R I+ F + TH H DHI GLP + S G K P T+ PP I++ V+ L
Sbjct: 43 PLRKIKWGFKGIDVILFTHYHADHISGLPGILLSIGNSGRKEPLTLMGPPGIQKVVDCLT 102
Query: 164 EIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------ 216
I L +L L+ L D T + ++I ++ H +P + I R+
Sbjct: 103 VISPGL---PYDLSLIELSDTNRTTTIMSNIEIKSIPVEHTLPCLAFSIEFKRQGKFDVE 159
Query: 217 -----KLKKQYIH--LKGKQIE---KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA 266
K+ Y + KG+ I K+ K + + +I +V++ DT P N+
Sbjct: 160 RASNLKIPLNYWNSLQKGQTITWDGKIIKPEMVVGEIRKGIKVSYCTDT------RPTNS 213
Query: 267 DAL---RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ +L+ E + + + A+Q H SE AK R K + LTH+S
Sbjct: 214 LVQFISESDLLVCEGMY-GKQSDLRKAEQKKHMLFSEAGLIAKLGRVKELWLTHYS 268
>gi|88604120|ref|YP_504298.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88189582|gb|ABD42579.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 445
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 29/218 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
V ++HGHLDHIG +P V + P I P +I E V++ E + G +N L
Sbjct: 77 VILSHGHLDHIGAVPKLV-----HRYNAPIIGTPYTI-ELVKQQIEGEKKFG---VNNKL 127
Query: 179 VALDVGETYEMRNDIVVRPFKTHHVI---------PSQGYVIYLLRKKLKKQYIHLKGKQ 229
+AL G+ Y + N + + +T H I +G ++Y L KL + + +
Sbjct: 128 IALKCGQRYNISNTLGMEFVRTQHSIIDTATVALYTPKGAIVYALDFKLDRNPVLGEPPD 187
Query: 230 IEKLKKSGVE--ITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI 287
KLKK G E + I S V G SE + D + ++ DD+ +I
Sbjct: 188 FAKLKKIGKEGVLCLITESTNVNKKGRCPSEQIAKNMVRDVI--------TSYEDDKNAI 239
Query: 288 EHAQQHGH-THLSEIIENAKWIRNKAVLLTHFSSRYHI 324
+ H + I E A I K +LL RY +
Sbjct: 240 IVSTFASHIARVKTIAECAHEIGRKPLLLGRSMERYCV 277
>gi|75759266|ref|ZP_00739366.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74493272|gb|EAO56388.1| Ribonuclease Z [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 318
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 70 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 127
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 128 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 185
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 186 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 245
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 246 FAAEDE---QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQ 287
>gi|395761549|ref|ZP_10442218.1| binuclear zinc phosphodiesterase [Janthinobacterium lividum PAMC
25724]
Length = 356
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 40/235 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP +AS + K P + + P +IK ++ +H L L
Sbjct: 94 ICITHVHGDHSYGLPGLLASASMTGRKKPLLLIAPAAIKAWIDATL-LHTQL---FLTYP 149
Query: 178 LVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHLKGK---QI 230
L+ +DV + + + H PS GY L R KL K + G
Sbjct: 150 LIHIDVDSAQVVHQEAGLSIERHALSHRAPSVGYCFALEISRWKLDKAALQAAGAPPGPA 209
Query: 231 EKLKKSGVE--ITDIILSPEVAF------------TGDTTSEFMLNPRNADALR-AKILI 275
L ++G + + D L AF GD + +L ADA A++L+
Sbjct: 210 WGLLQAGQDALLDDGTLLRAAAFRQVETQRATVVIGGDNDTPALL----ADACNGAQLLV 265
Query: 276 TEATFLDDEMSIEHAQQHG----HTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EAT+ + + Q+ G H+ + + + A+ +R ++LTHFS+RYH D
Sbjct: 266 HEATYTEAML-----QKVGPGPTHSSVQRVAQFAESVRLPNLILTHFSARYHNAD 315
>gi|422883981|ref|ZP_16930430.1| ribonuclease Z [Streptococcus sanguinis SK49]
gi|332362079|gb|EGJ39881.1| ribonuclease Z [Streptococcus sanguinis SK49]
Length = 309
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 101/240 (42%), Gaps = 41/240 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T IF P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIFGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDEDSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAVGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR--- 270
G+ I + + D I +P +A GDT + A ++R
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTR-------KTAASVRLAV 228
Query: 271 -AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
A +L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 229 AADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|293410631|ref|ZP_06654207.1| ribonuclease Z [Escherichia coli B354]
gi|291471099|gb|EFF13583.1| ribonuclease Z [Escherichia coli B354]
Length = 311
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|421786914|ref|ZP_16223297.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
gi|410410524|gb|EKP62428.1| putative ribonuclease Z [Acinetobacter baumannii Naval-82]
Length = 318
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE +L + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRVLKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|126663926|ref|ZP_01734921.1| ribonuclease Z [Flavobacteria bacterium BAL38]
gi|126624190|gb|EAZ94883.1| ribonuclease Z [Flavobacteria bacterium BAL38]
Length = 301
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 34/230 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GL +++ L N + ++ P +KE + L ++ S N
Sbjct: 54 NHIFISHLHGDHFYGLIGLISTFMLLNRENDLHVYGPKGVKEII--LLQLRASGSFTGYN 111
Query: 176 LDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG---KQI 230
L L+ E+ + D ++V+ +H I + G+ L ++KL K++++++ +I
Sbjct: 112 LYFHELESKESEVIFEDETVIVKTIPLNHRIYTNGF---LFQEKLGKRHLNIEAVAKYKI 168
Query: 231 EKLK----KSGVEIT----DII------LSPEV----AFTGDTTSEFMLNPRNADALRAK 272
EK KSG +T ++I L P+ AF DT + + P +
Sbjct: 169 EKCYFDKIKSGGNVTLDSGEVIDNELLSLPPDATKSYAFCSDTMYDESIVPIINEV---D 225
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L EATFLD E + ++ HT E + AK K ++L H+S+RY
Sbjct: 226 VLYHEATFLDSEA--HYTEKTKHTTAKEAAKIAKLANVKQLILGHYSTRY 273
>gi|116873412|ref|YP_850193.1| metallo-beta-lactamase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466485|sp|A0AK82.1|RNZ_LISW6 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|116742290|emb|CAK21414.1| metallo-beta-lactamase family protein [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 306
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 105/240 (43%), Gaps = 41/240 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I E VE L L
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSTITIYGPAGIAEYVETSLR----LSGTRLTYK 114
Query: 178 LVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
++ ++ G +E + V+ H + S GY I L +KLK + I G
Sbjct: 115 IIFNEIEPGLIFEDKMFSVIAD-DLEHGVRSFGYRIVEKDKQGALNAEKLKAEGIE-AGP 172
Query: 229 QIEKLKKSG-VEITD--------IILSPE----VAFTGD---TTSEFMLNPRNADALRAK 272
+KLK VE+ D I P+ ++ GD T SE L AL A
Sbjct: 173 IFQKLKNGEVVELEDGRVVDGKNYIGEPQKGKIISIFGDTKETASELEL------ALNAD 226
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
IL+ EATF D+ + A ++ H+ + AK K ++LTH SSRY D +A+L
Sbjct: 227 ILVHEATFEGDKGKM--AGEYMHSTTLQAANLAKKANVKKLILTHISSRYD-RDASKALL 283
>gi|426385982|ref|XP_004059475.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1 [Gorilla
gorilla gorilla]
gi|426385984|ref|XP_004059476.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Gorilla
gorilla gorilla]
Length = 363
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVMEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|399216969|emb|CCF73656.1| unnamed protein product [Babesia microti strain RI]
Length = 624
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 41/209 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRG--LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ ITH H DH G+ VA R L + ++ +P +K +E +F N + +
Sbjct: 451 IVITHSHADHHMGIAALVAYRNKVLPDADVISVILPSKVKRWIEHIF-------NTSIRI 503
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS 236
LD + ++ PFK I L + +L + I
Sbjct: 504 PCNILD-------HSSAIITPFK-----------ITLYQVRLHSILV----LHISDSAGI 541
Query: 237 GVEITDIILSPEVAFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
VE+ ++ ++ ++GDT E +N A ILI E+TF ++S HA H
Sbjct: 542 TVEVPNVF---KIVYSGDTRPCETTINA----ATNCDILIHESTFYQQDLS--HAVDKKH 592
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHI 324
T + E +E AK K ++LTHFS RY +
Sbjct: 593 TTVEEAVEIAKRANCKLLVLTHFSQRYSL 621
>gi|416343827|ref|ZP_11677727.1| Ribonuclease Z [Escherichia coli EC4100B]
gi|320199859|gb|EFW74448.1| Ribonuclease Z [Escherichia coli EC4100B]
Length = 311
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + VGE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGVGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|417545642|ref|ZP_12196728.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|421668421|ref|ZP_16108460.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|421671576|ref|ZP_16111546.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
gi|400383530|gb|EJP42208.1| putative ribonuclease Z [Acinetobacter baumannii OIFC032]
gi|410380313|gb|EKP32901.1| putative ribonuclease Z [Acinetobacter baumannii OIFC087]
gi|410381538|gb|EKP34103.1| putative ribonuclease Z [Acinetobacter baumannii OIFC099]
Length = 318
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLYLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILIT 276
LK+ VE IL + GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 EATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|52141354|ref|YP_085475.1| ribonuclease Z [Bacillus cereus E33L]
gi|76363372|sp|Q635E2.1|RNZ_BACCZ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|51974823|gb|AAU16373.1| possible metallo-beta-lactamase [Bacillus cereus E33L]
Length = 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|229031788|ref|ZP_04187777.1| Ribonuclease Z [Bacillus cereus AH1271]
gi|228729534|gb|EEL80522.1| Ribonuclease Z [Bacillus cereus AH1271]
Length = 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + G
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVK-PGPLF 175
Query: 231 EKLKKSG-VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEATF 280
++LK VE+ D L F G ++ + R +A R A +L+ EATF
Sbjct: 176 KRLKDGEVVELEDGTLLNGKDFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEATF 235
Query: 281 -LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+DE + A + H+ + A K ++LTH SSRY
Sbjct: 236 AAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|421664435|ref|ZP_16104575.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
gi|408712732|gb|EKL57915.1| putative ribonuclease Z [Acinetobacter baumannii OIFC110]
Length = 324
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------------ 221
+DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDI 175
Query: 222 YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-AKILIT 276
+ HLK + + ++ D I GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 ESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|421697441|ref|ZP_16137004.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
gi|404558202|gb|EKA63486.1| putative ribonuclease Z [Acinetobacter baumannii WC-692]
Length = 324
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ I + P +++++ FEI L ++ L L
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARSKLLIVIAP---KEIQQWFEITAQLTDLHLPYSL 115
Query: 179 VALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------------ 221
+DV E ++ ++ +V+ H +PS + IY+ ++KKL Q
Sbjct: 116 QFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTQALTQLGVPQGDI 175
Query: 222 YIHLKGKQIEKLKKSGVEITDII----LSPEVAFTGDTTSEFMLNPRNADALR-AKILIT 276
+ HLK + + ++ D I GD +L ADA + A++LI
Sbjct: 176 WGHLKRGYNVEFEGRTLKAQDFIKVQNQQVHAIIGGDNDQPELL----ADACKDAQLLIH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
E+T+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 232 ESTYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLSNLILTHFSPRHQDKAGQQAI 285
>gi|423604221|ref|ZP_17580114.1| ribonuclease Z [Bacillus cereus VD102]
gi|401245907|gb|EJR52260.1| ribonuclease Z [Bacillus cereus VD102]
Length = 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAKDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|229198271|ref|ZP_04324978.1| Ribonuclease Z [Bacillus cereus m1293]
gi|402555728|ref|YP_006596999.1| ribonuclease Z [Bacillus cereus FRI-35]
gi|423574169|ref|ZP_17550288.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|228585150|gb|EEK43261.1| Ribonuclease Z [Bacillus cereus m1293]
gi|401212738|gb|EJR19481.1| ribonuclease Z [Bacillus cereus MSX-D12]
gi|401796938|gb|AFQ10797.1| ribonuclease Z [Bacillus cereus FRI-35]
Length = 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|389856311|ref|YP_006358554.1| ribonuclease Z [Streptococcus suis ST1]
gi|353740029|gb|AER21036.1| ribonuclease Z [Streptococcus suis ST1]
Length = 309
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 102/242 (42%), Gaps = 45/242 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-----------LYNLKPPTIFVPPSIKEDVEKL-FEIH 166
+FITH H DHI GLP +++SR LY + +V S+K +L + IH
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQSSEEQTDIELYGPEGIRSYVLTSLKVSGTRLPYRIH 118
Query: 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIH 224
NVE VG+ E + V K H +P GY + L L + +
Sbjct: 119 FHEFNVET--------VGQVLET-DKFKVFAEKLDHTVPCVGYRVIQKDLEGTLDAEALR 169
Query: 225 LK----GKQIEKLK-------KSGVEI--TDIILSPE----VAFTGDTTSEFMLNPRNAD 267
G K+K + G EI +D I P V GDT +
Sbjct: 170 AASVPFGPLFGKIKNGQNVTLEDGTEIIASDYISPPRPGKVVTILGDTRK---CHASVRL 226
Query: 268 ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
A+ A +L+ EAT+ + I A++HGH+ E + AK K +LL H S R+ +DI
Sbjct: 227 AVNADVLVHEATYGKGDEKI--ARKHGHSTNMEAAQVAKDAGVKQLLLNHISPRFLSKDI 284
Query: 328 RQ 329
Q
Sbjct: 285 SQ 286
>gi|297702621|ref|XP_002828271.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Pongo abelii]
Length = 363
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--------- 164
+FITH H DH GLP + + S + + +P I+ P +++ + + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRAMELSHTELVFH 117
Query: 165 ---------------------IHRSLGNV---ELNLDLVALDVGE-TYEMRND--IVVRP 197
+H + + E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKEFVHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLVLTHFSQRY 318
>gi|423401010|ref|ZP_17378183.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|423478286|ref|ZP_17455001.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
gi|401654000|gb|EJS71543.1| ribonuclease Z [Bacillus cereus BAG2X1-2]
gi|402428448|gb|EJV60545.1| ribonuclease Z [Bacillus cereus BAG6X1-1]
Length = 307
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|206578868|ref|YP_002237337.1| ribonuclease Z [Klebsiella pneumoniae 342]
gi|290508470|ref|ZP_06547841.1| ribonuclease Z [Klebsiella sp. 1_1_55]
gi|254808641|sp|B5XNW7.1|RBN_KLEP3 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|206567926|gb|ACI09702.1| ribonuclease Z [Klebsiella pneumoniae 342]
gi|289777864|gb|EFD85861.1| ribonuclease Z [Klebsiella sp. 1_1_55]
Length = 306
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG------ 227
L ++ + G ++ V + H + GY I K L + G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIEQHDKPGTLDAAQLIADGVPPGPL 174
Query: 228 -KQIEKLKKSGVEITDII-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
Q+++ ++ +E +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVTLEDGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|339488337|ref|YP_004702865.1| ribonuclease Z [Pseudomonas putida S16]
gi|338839180|gb|AEJ13985.1| ribonuclease Z [Pseudomonas putida S16]
Length = 319
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P V P+ D + + + L +L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLDLVLPAALHDWVRQGLV---ASDTFLPFEL 114
Query: 179 VALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
L V E E R+D + V + H +PS G+V L + + L+ + I + G
Sbjct: 115 RLLAVEELVEWRSDALEVTSVQLSHRVPSVGFVFTELNPEPRLNIPRLEAEGIPRGPLWG 174
Query: 238 VEITDII-------------LSP-----EVAFTGDTTSEFMLNPRNADALR-AKILITEA 278
+ L P V GD + +L AD R A +L+ EA
Sbjct: 175 ELAKGLTVQHGGRRLHGKDYLRPSRPPRRVIVCGDNDNPELL----ADVARGADVLVHEA 230
Query: 279 TFLDDEMSIEHAQ-QHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH--------IEDIRQ 329
TF + +E GH+ + + A+ + ++LTHFS+RY I+++R
Sbjct: 231 TF--TQAVVERTGVTFGHSTAAAVARFAETAGVRNLVLTHFSARYQHDPRRSPSIDNVRD 288
Query: 330 AVL 332
L
Sbjct: 289 EAL 291
>gi|448630002|ref|ZP_21672813.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
gi|445756751|gb|EMA08110.1| ribonuclease Z [Haloarcula vallismortis ATCC 29715]
Length = 311
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 39/276 (14%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSI 155
FD G R + + +F+TH H DH+ G+P + + + I P
Sbjct: 35 FDCGEGTQRQMMHFGTGFAVDHLFVTHLHGDHVLGIPGLLQTWDFNERERAIAIHTPAGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
+ ++++L + + + + + ++ V+ G+ R + +R +T H S GYV+
Sbjct: 95 RGNIKQLIQANGTTPSFPVRINEVS--AGDVVLDRPEYEIRAIETEHRCASVGYVLDEDD 152
Query: 212 ---YLLRKKLKKQYIHLKGKQIEKL-KKSGVEITDIILSPEV-----------AFTGDT- 255
R+K ++++ G + KL + +E + PE +TGDT
Sbjct: 153 RKGKFDREKAEEEFGIPPGPKYSKLHRGEAIEHEGETIQPEAVVGPPRPGRRFVYTGDTL 212
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T + +AD +L+ +ATF +D E A+ H+ E + A+ +
Sbjct: 213 PTESVIEASEDAD-----LLVHDATFAEDRK--ERAKATAHSTAREAADVARQAGASTLA 265
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFK 350
LTH S+RY Q V + + +VV +G +
Sbjct: 266 LTHISTRY-AASTDQLVDEARDAFDGEVVLAEDGME 300
>gi|254852872|ref|ZP_05242220.1| metallo-beta-lactamase [Listeria monocytogenes FSL R2-503]
gi|300763718|ref|ZP_07073715.1| metallo-beta-lactamase [Listeria monocytogenes FSL N1-017]
gi|258606206|gb|EEW18814.1| metallo-beta-lactamase [Listeria monocytogenes FSL R2-503]
gi|300515454|gb|EFK42504.1| metallo-beta-lactamase [Listeria monocytogenes FSL N1-017]
Length = 306
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + + + EM +V H + S GY I L +KLK + G
Sbjct: 116 NFEEIEPGLIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T +E L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 274
>gi|442610138|ref|ZP_21024863.1| Ribonuclease Z [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748357|emb|CCQ10925.1| Ribonuclease Z [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 313
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPS-IKEDVEKLFEIHRSLGNVELNLD 177
V ++H H DH GLP +A+ + K P V P + E V FE L +++L +
Sbjct: 58 VAVSHVHGDHCYGLPGVLAAIQMSGRKEPVALVAPQKVIEFVRCTFE----LTDLQLAFN 113
Query: 178 LVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGK 228
LV + E + N ++ H +PS G+ I L KL +Q I G
Sbjct: 114 LVCHPLEEVQQAINFEGFMLEVITLKHRVPSYGFKITETVIPNKLHLDKLNRQGIK-SGS 172
Query: 229 QIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILIT 276
L+K VE + +L+ + V GD ++ P +A L+
Sbjct: 173 HYNCLQKGQDVEYENHVLTAKEYTYPSWQPRTVIVCGDNEKPSLIAPWIKEA---DTLVH 229
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
EATF ++S + GH+ + + + A+ ++LTHFS RYH E+
Sbjct: 230 EATFTSKDLS-KIGYHTGHSDAARVAQFAEMHALNHLILTHFSVRYHGEN 278
>gi|425423085|ref|ZP_18804253.1| ribonuclease Z [Escherichia coli 0.1288]
gi|408343640|gb|EKJ58034.1| ribonuclease Z [Escherichia coli 0.1288]
Length = 305
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 50/273 (18%)
Query: 100 LKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158
L AF++G+ + +FI+H H DH+ GLP + SR + ++P TI+ P I+E
Sbjct: 48 LHTAFNLGKL-------DKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREF 100
Query: 159 VEKLFEIHRSLGNVELNLDLVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI----- 211
VE I S + L++V + GE + +R V + H + GY I
Sbjct: 101 VETALRISGSW--TDYPLEIVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDK 155
Query: 212 --YLLRKKLKKQ-------YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTS 257
L + LK + LK GK I + D + +P +A GDT
Sbjct: 156 PGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT-- 213
Query: 258 EFMLNPRNADALRAK---ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
P +A AK +++ EAT LD M + A GH+ + A+ ++
Sbjct: 214 ----GPCDAALDLAKGVDVMVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLI 267
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
+TH SSRY + + + + +S + P TE
Sbjct: 268 ITHVSSRYDDKGCQHLLRECRS-----IFPATE 295
>gi|432584524|ref|ZP_19820918.1| ribonuclease Z [Escherichia coli KTE57]
gi|431115883|gb|ELE19377.1| ribonuclease Z [Escherichia coli KTE57]
Length = 305
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + G+ ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGDIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|422974439|ref|ZP_16976349.1| ribonuclease Z [Escherichia coli TA124]
gi|371595818|gb|EHN84665.1| ribonuclease Z [Escherichia coli TA124]
Length = 311
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 43/256 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S +
Sbjct: 64 NKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYP 121
Query: 176 LDLVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---K 228
L++V + GE + +R V + H + GY I K L Q + G
Sbjct: 122 LEIVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPG 178
Query: 229 QIEKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK-- 272
+ + K+G IT D + +P +A GDT P +A AK
Sbjct: 179 PLFQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGV 232
Query: 273 -ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+++ EAT LD M + A GH+ + A+ +++TH SSRY + + +
Sbjct: 233 DVMVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLL 290
Query: 332 LKLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 291 RECRS-----IFPATE 301
>gi|432680885|ref|ZP_19916259.1| ribonuclease Z [Escherichia coli KTE143]
gi|431220282|gb|ELF17662.1| ribonuclease Z [Escherichia coli KTE143]
Length = 305
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVNV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|297275312|ref|XP_001099883.2| PREDICTED: NAD-dependent malic enzyme, mitochondrial [Macaca
mulatta]
Length = 915
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + + +P I+ P +++ + + E+
Sbjct: 610 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFR 669
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 670 YVVHELVPTADQCPAEELKEFAHVNRAGSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 729
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 730 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 789
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 790 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 846
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 847 QMAATFAKLCRAKRLVLTHFSQRY 870
>gi|229174819|ref|ZP_04302340.1| Ribonuclease Z [Bacillus cereus MM3]
gi|423457672|ref|ZP_17434469.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
gi|228608651|gb|EEK65952.1| Ribonuclease Z [Bacillus cereus MM3]
gi|401148056|gb|EJQ55549.1| ribonuclease Z [Bacillus cereus BAG5X2-1]
Length = 307
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|386758976|ref|YP_006232192.1| ribonuclease Z [Bacillus sp. JS]
gi|384932258|gb|AFI28936.1| ribonuclease Z [Bacillus sp. JS]
Length = 307
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 35/247 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ L
Sbjct: 59 IFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT----HLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGY------VIYLLRKKLKKQYIHLKGKQI 230
L ++ E +D +V H + + GY V L+ + K+ G
Sbjct: 115 LAVQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVTGALKADVLKEMNIPPGPVY 174
Query: 231 EKLKKSG---------VEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
+K+KK + +D + P+ V F+GDT L D +L+ E
Sbjct: 175 QKIKKGETVTLEDGRIINGSDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF ++ + H T + + AK K ++LTH S+RY + A L+LQ K
Sbjct: 232 ATFAKEDHKLAFGYYHSTTEQAAV--TAKEAGAKQLILTHISARYQGD----ASLELQ-K 284
Query: 338 VSAKVVP 344
+ V P
Sbjct: 285 EAVDVFP 291
>gi|218700743|ref|YP_002408372.1| ribonuclease Z [Escherichia coli IAI39]
gi|432869636|ref|ZP_20090229.1| ribonuclease Z [Escherichia coli KTE147]
gi|254808632|sp|B7NNU8.1|RBN_ECO7I RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218370729|emb|CAR18542.1| binuclear zinc phosphodiesterase [Escherichia coli IAI39]
gi|431410222|gb|ELG93384.1| ribonuclease Z [Escherichia coli KTE147]
Length = 305
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|432398096|ref|ZP_19640877.1| ribonuclease Z [Escherichia coli KTE25]
gi|432407324|ref|ZP_19650033.1| ribonuclease Z [Escherichia coli KTE28]
gi|432723720|ref|ZP_19958640.1| ribonuclease Z [Escherichia coli KTE17]
gi|432728307|ref|ZP_19963186.1| ribonuclease Z [Escherichia coli KTE18]
gi|432742001|ref|ZP_19976720.1| ribonuclease Z [Escherichia coli KTE23]
gi|432991308|ref|ZP_20179972.1| ribonuclease Z [Escherichia coli KTE217]
gi|433111519|ref|ZP_20297384.1| ribonuclease Z [Escherichia coli KTE150]
gi|430916200|gb|ELC37278.1| ribonuclease Z [Escherichia coli KTE25]
gi|430930083|gb|ELC50592.1| ribonuclease Z [Escherichia coli KTE28]
gi|431266274|gb|ELF57836.1| ribonuclease Z [Escherichia coli KTE17]
gi|431273996|gb|ELF65070.1| ribonuclease Z [Escherichia coli KTE18]
gi|431283692|gb|ELF74551.1| ribonuclease Z [Escherichia coli KTE23]
gi|431495390|gb|ELH74976.1| ribonuclease Z [Escherichia coli KTE217]
gi|431628823|gb|ELI97199.1| ribonuclease Z [Escherichia coli KTE150]
Length = 305
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEISTGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAVPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|56752093|ref|YP_172794.1| ribonuclease Z [Synechococcus elongatus PCC 6301]
gi|81300820|ref|YP_401028.1| ribonuclease Z [Synechococcus elongatus PCC 7942]
gi|56687052|dbj|BAD80274.1| hypothetical protein YCF56 [Synechococcus elongatus PCC 6301]
gi|81169701|gb|ABB58041.1| RNAse Z [Synechococcus elongatus PCC 7942]
Length = 393
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 30/244 (12%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R R Q +F+TH H DH+ GL +AS GL N + ++ P
Sbjct: 35 FDCGEGTQHQFLRSELRISQLRRIFVTHMHGDHVFGLMGLLASVGLAGNPERIDLYGPKP 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+++ ++ + R+ ++ L + + G YE +IVV HH +P+ GY I
Sbjct: 95 LRDYLQACAQHSRT--HINYPLQIATVQPGVIYE-DAEIVVSCAPLHHRVPAFGYRIQER 151
Query: 215 RKK-----LKKQYIHLKGKQIEKLKKSGVEIT--DIILSPEVAFTGDT---------TSE 258
+ K + + + I K K G +T D G T T
Sbjct: 152 DRPGRFDVEKARSLGIPPGPIYKQLKDGETVTLEDGRQIDGRQLCGPTERGRSMVYCTDT 211
Query: 259 FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318
A A A +LI E+TF D + E A+Q H + E AK + ++LTHF
Sbjct: 212 IFCESAIALAQDADVLIHESTFSDRDR--EMAEQRLHATATMAAEVAKQAGVRQLILTHF 269
Query: 319 SSRY 322
S RY
Sbjct: 270 SPRY 273
>gi|404281582|ref|YP_006682480.1| ribonuclease Z [Listeria monocytogenes SLCC2755]
gi|404287400|ref|YP_006693986.1| ribonuclease Z [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|404228217|emb|CBY49622.1| ribonuclease Z [Listeria monocytogenes SLCC2755]
gi|404246329|emb|CBY04554.1| ribonuclease Z [Listeria monocytogenes serotype 7 str. SLCC2482]
Length = 310
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 63 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 119
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + + + EM +V H + S GY I L +KLK + G
Sbjct: 120 NFEEIEPGLIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 175
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T +E L AL A
Sbjct: 176 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANELEL------ALNA 229
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 230 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 278
>gi|381164671|ref|ZP_09873901.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Saccharomonospora azurea NA-128]
gi|379256576|gb|EHY90502.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Saccharomonospora azurea NA-128]
Length = 306
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 34/233 (14%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169
P A+ + + +TH H DH GLP V L + P S +E E+L
Sbjct: 52 PASAVTR--ICLTHFHGDHCLGLPGVVQRLSLDGVARVHAHYPASGQEHFERLRHASVFH 109
Query: 170 GNVELNLDLVALD-------VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
EL + V D GE +R D V F V P + ++ L L+
Sbjct: 110 ETTELVEEPVTGDGVVARGEFGELSALRLDHPVEAFGYRLVEPDRRTMVPRL---LRCHG 166
Query: 223 IHLKGKQIEKLKKSG--------VEITDIILSPEVAFTGDTTSEFMLNPRNAD-----AL 269
IH G + L +SG V + D+ V TG + F+++ R D A
Sbjct: 167 IH--GPDVGALLRSGSITVGGRTVAVEDV----SVLRTGQRFA-FVMDTRLCDNVFALAQ 219
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
A +L+ EATFLD+E + H ++GH + A+ + ++LTHFS RY
Sbjct: 220 DADLLVIEATFLDEEAELAH--RYGHLTARQAARVARESGVRTLVLTHFSQRY 270
>gi|423124990|ref|ZP_17112669.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
gi|376400435|gb|EHT13048.1| ribonuclease Z [Klebsiella oxytoca 10-5250]
Length = 306
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 107/263 (40%), Gaps = 41/263 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRS-----LG 170
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S L
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTLYGPKGLKEFVETALRLSGSWTDYPLA 117
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL----- 225
VE+ LV + G V + +H + GY I K L
Sbjct: 118 IVEVEPGLVLDEAG--------FRVTAWPLNHPVECYGYRIEQHDKPGTLDAAQLIAEGV 169
Query: 226 -KGKQIEKLKKS-GVEITD--II-----LSP-----EVAFTGDTTSEFMLNPRNADALRA 271
G ++LK+ VE+ D +I L P ++A GDT P + R
Sbjct: 170 PPGPLFQRLKQGLTVELEDGRVIDGRRYLGPTTPGKKLAIFGDTAP----CPAALELARG 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
++ L+ M+ E A GH+ + A ++ THFSSRY E ++ +
Sbjct: 226 VDVMVHEVTLEQAMA-EKANSRGHSTSQQTAALAHDAGVGTLIATHFSSRYDAEGCQRLL 284
Query: 332 LKLQSKVSAKVVPLTEGFKSVYT 354
+ Q + V L E F VYT
Sbjct: 285 AECQEIFPSTV--LAEDFM-VYT 304
>gi|170680744|ref|YP_001744468.1| ribonuclease Z [Escherichia coli SMS-3-5]
gi|170518462|gb|ACB16640.1| ribonuclease Z [Escherichia coli SMS-3-5]
Length = 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVNV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|386624972|ref|YP_006144700.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
gi|349738709|gb|AEQ13415.1| RNase BN, tRNA processing enzyme [Escherichia coli O7:K1 str. CE10]
Length = 311
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|47568203|ref|ZP_00238907.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
gi|47555193|gb|EAL13540.1| metallo-beta-lactamase, AtsA/ElaC family [Bacillus cereus G9241]
Length = 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 96/226 (42%), Gaps = 29/226 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ + + P + GDT F R A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPAQKGRIITILGDT--RFCEASREL-AQDADVLVHEA 233
Query: 279 TF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 234 TFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|126179500|ref|YP_001047465.1| ribonuclease Z [Methanoculleus marisnigri JR1]
gi|125862294|gb|ABN57483.1| RNAse Z [Methanoculleus marisnigri JR1]
Length = 317
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 37/243 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N VFITH H DH G+ V + P I+ PP + E V+ + I R +
Sbjct: 61 NAVFITHWHADHFLGVFGLVETLAFMGRTDPLPIYGPPWVGEFVDLVQRISRHTRGFSVT 120
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL---KKQYIHL------- 225
+ L+ G N VR F T H IP GYV+ + +++ I L
Sbjct: 121 AHV--LEHGSVVPF-NGYTVRAFTTLHGIPGLGYVLEEDERPGRFNRERAIELGVPPGPL 177
Query: 226 -----KGKQIEKLKKSGVEI----TDIILSP----EVAFTGDTTSEFMLNPRNADALR-A 271
+G+++ ++ + GVE D++ P ++ +TGD T P A +R A
Sbjct: 178 FGRLQRGEEV-RVVRDGVETAVRPADVMGEPRPGRKIVYTGD-TRPLQDQPGIAALIRGA 235
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIED 326
+LI +ATF D E + A+ H+ E E A + + + L H SSRY HI D
Sbjct: 236 DLLIHDATFDDQES--DRARDVLHSTAGEAGEAATALGARMLALMHISSRYASTANHIHD 293
Query: 327 IRQ 329
++
Sbjct: 294 AKR 296
>gi|395243539|ref|ZP_10420524.1| Ribonuclease Z [Lactobacillus hominis CRBIP 24.179]
gi|394484159|emb|CCI81532.1| Ribonuclease Z [Lactobacillus hominis CRBIP 24.179]
Length = 313
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 53/256 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP ++SR + P TI+ PP
Sbjct: 36 FDVGEATQHQILRTNIRPRKITRIFISHNHGDHIFGLPGLLSSRSFQGDGGPLTIYGPPG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
I++ V+ ++ R+ V + V L D G +E + V K H +PS G+ +
Sbjct: 96 IEQFVQTSLKVSRT--KVSYPIKYVNLTDDGLIFE-NSSFAVFTAKLDHRVPSYGFRVVE 152
Query: 213 ------LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNA 266
LL KL + ++ G + +LK ++L G +F+ PR
Sbjct: 153 KPKPGELLMDKLAEYHVP-NGPLLGQLKAGKT----VVLDDGTTLNG---KDFLGEPRPG 204
Query: 267 D-----------------ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
A A +L+ E+TF ++ + H H S I+ AK
Sbjct: 205 RIVTIIYDTRPTKSIGQLAQDADVLVHESTFDGEDSKMAHRYFH-----STCIDAAKVAA 259
Query: 310 NKAVL---LTHFSSRY 322
+ V+ L H S+RY
Sbjct: 260 SHNVVQLYLNHISARY 275
>gi|319956849|ref|YP_004168112.1| ribonuclease z [Nitratifractor salsuginis DSM 16511]
gi|319419253|gb|ADV46363.1| ribonuclease Z [Nitratifractor salsuginis DSM 16511]
Length = 306
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 32/226 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GL +ASRG+ + P I+ PP +KE +E + L + L +
Sbjct: 59 IFITHLHGDHVYGLFGLLASRGMLMCETPLEIYGPPGLKEMLESVMR----LSQLHLPFE 114
Query: 178 LVALDVGETYEMR-NDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQ 229
+ ++ T + + P H I GY L R K + I +G
Sbjct: 115 VKTRELNGTERLEFGSYRIEPVPMSHSITCYGYAFIEKDRPGKLDRDKAAELGIP-EGPM 173
Query: 230 IEKLKKSG---------VEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAKILIT 276
+ +LK +E +++ P + GD +P + A +LI
Sbjct: 174 LGRLKAGEPVLLPNGRIIEPVEVLSLPRPGRRILIGGDNDRPERFSPYSG----ADLLIH 229
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
EAT+ + ++ HT ++ AK ++ KA+ THFS+RY
Sbjct: 230 EATYTQKDFD-RLPRKFKHTTALQLGCAAKKMKMKALAATHFSARY 274
>gi|26248658|ref|NP_754698.1| ribonuclease Z [Escherichia coli CFT073]
gi|91211564|ref|YP_541550.1| ribonuclease Z [Escherichia coli UTI89]
gi|117624461|ref|YP_853374.1| ribonuclease Z [Escherichia coli APEC O1]
gi|218559185|ref|YP_002392098.1| ribonuclease Z [Escherichia coli S88]
gi|227887328|ref|ZP_04005133.1| ribonuclease Z [Escherichia coli 83972]
gi|237704746|ref|ZP_04535227.1| ribonuclease Z [Escherichia sp. 3_2_53FAA]
gi|300983331|ref|ZP_07176545.1| ribonuclease Z [Escherichia coli MS 45-1]
gi|301049024|ref|ZP_07196010.1| ribonuclease Z [Escherichia coli MS 185-1]
gi|386600148|ref|YP_006101654.1| ribonuclease Z [Escherichia coli IHE3034]
gi|386603708|ref|YP_006110008.1| ribonuclease Z [Escherichia coli UM146]
gi|386630067|ref|YP_006149787.1| ribonuclease Z [Escherichia coli str. 'clone D i2']
gi|386634987|ref|YP_006154706.1| ribonuclease Z [Escherichia coli str. 'clone D i14']
gi|386639842|ref|YP_006106640.1| ribonuclease Z [Escherichia coli ABU 83972]
gi|417085535|ref|ZP_11952963.1| ribonuclease Z [Escherichia coli cloneA_i1]
gi|417286660|ref|ZP_12073949.1| ribonuclease BN [Escherichia coli TW07793]
gi|419947206|ref|ZP_14463563.1| ribonuclease Z [Escherichia coli HM605]
gi|422360289|ref|ZP_16440923.1| ribonuclease Z [Escherichia coli MS 110-3]
gi|422365072|ref|ZP_16445576.1| ribonuclease Z [Escherichia coli MS 153-1]
gi|422749549|ref|ZP_16803461.1| ribonuclease BN [Escherichia coli H252]
gi|422755694|ref|ZP_16809518.1| ribonuclease BN [Escherichia coli H263]
gi|422837677|ref|ZP_16885650.1| ribonuclease Z [Escherichia coli H397]
gi|432358613|ref|ZP_19601839.1| ribonuclease Z [Escherichia coli KTE4]
gi|432363347|ref|ZP_19606514.1| ribonuclease Z [Escherichia coli KTE5]
gi|432412481|ref|ZP_19655144.1| ribonuclease Z [Escherichia coli KTE39]
gi|432432557|ref|ZP_19674986.1| ribonuclease Z [Escherichia coli KTE187]
gi|432436994|ref|ZP_19679382.1| ribonuclease Z [Escherichia coli KTE188]
gi|432457376|ref|ZP_19699560.1| ribonuclease Z [Escherichia coli KTE201]
gi|432496377|ref|ZP_19738173.1| ribonuclease Z [Escherichia coli KTE214]
gi|432505115|ref|ZP_19746839.1| ribonuclease Z [Escherichia coli KTE220]
gi|432524466|ref|ZP_19761594.1| ribonuclease Z [Escherichia coli KTE230]
gi|432569348|ref|ZP_19805860.1| ribonuclease Z [Escherichia coli KTE53]
gi|432574348|ref|ZP_19810828.1| ribonuclease Z [Escherichia coli KTE55]
gi|432588596|ref|ZP_19824952.1| ribonuclease Z [Escherichia coli KTE58]
gi|432593534|ref|ZP_19829851.1| ribonuclease Z [Escherichia coli KTE60]
gi|432598255|ref|ZP_19834531.1| ribonuclease Z [Escherichia coli KTE62]
gi|432608155|ref|ZP_19844340.1| ribonuclease Z [Escherichia coli KTE67]
gi|432651841|ref|ZP_19887595.1| ribonuclease Z [Escherichia coli KTE87]
gi|432755083|ref|ZP_19989633.1| ribonuclease Z [Escherichia coli KTE22]
gi|432779208|ref|ZP_20013451.1| ribonuclease Z [Escherichia coli KTE59]
gi|432784234|ref|ZP_20018413.1| ribonuclease Z [Escherichia coli KTE63]
gi|432788155|ref|ZP_20022287.1| ribonuclease Z [Escherichia coli KTE65]
gi|432821604|ref|ZP_20055296.1| ribonuclease Z [Escherichia coli KTE118]
gi|432827736|ref|ZP_20061388.1| ribonuclease Z [Escherichia coli KTE123]
gi|432845239|ref|ZP_20078072.1| ribonuclease Z [Escherichia coli KTE141]
gi|432974416|ref|ZP_20163255.1| ribonuclease Z [Escherichia coli KTE209]
gi|432996004|ref|ZP_20184609.1| ribonuclease Z [Escherichia coli KTE218]
gi|433000591|ref|ZP_20189116.1| ribonuclease Z [Escherichia coli KTE223]
gi|433005726|ref|ZP_20194155.1| ribonuclease Z [Escherichia coli KTE227]
gi|433008309|ref|ZP_20196726.1| ribonuclease Z [Escherichia coli KTE229]
gi|433058787|ref|ZP_20245833.1| ribonuclease Z [Escherichia coli KTE124]
gi|433087948|ref|ZP_20274319.1| ribonuclease Z [Escherichia coli KTE137]
gi|433116202|ref|ZP_20301993.1| ribonuclease Z [Escherichia coli KTE153]
gi|433125870|ref|ZP_20311429.1| ribonuclease Z [Escherichia coli KTE160]
gi|433139939|ref|ZP_20325195.1| ribonuclease Z [Escherichia coli KTE167]
gi|433149856|ref|ZP_20334877.1| ribonuclease Z [Escherichia coli KTE174]
gi|433154390|ref|ZP_20339332.1| ribonuclease Z [Escherichia coli KTE176]
gi|433164143|ref|ZP_20348881.1| ribonuclease Z [Escherichia coli KTE179]
gi|433169248|ref|ZP_20353876.1| ribonuclease Z [Escherichia coli KTE180]
gi|433198904|ref|ZP_20382806.1| ribonuclease Z [Escherichia coli KTE94]
gi|433208443|ref|ZP_20392117.1| ribonuclease Z [Escherichia coli KTE97]
gi|433213179|ref|ZP_20396769.1| ribonuclease Z [Escherichia coli KTE99]
gi|442608047|ref|ZP_21022807.1| Ribonuclease Z [Escherichia coli Nissle 1917]
gi|41017561|sp|Q8FFK8.1|RBN_ECOL6 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|122423124|sp|Q1R9E5.1|RBN_ECOUT RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|166991101|sp|A1ADC0.1|RBN_ECOK1 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808630|sp|B7MG36.1|RBN_ECO45 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|26109063|gb|AAN81266.1|AE016763_225 Protein elaC [Escherichia coli CFT073]
gi|91073138|gb|ABE08019.1| protein ElaC [Escherichia coli UTI89]
gi|115513585|gb|ABJ01660.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|218365954|emb|CAR03698.1| binuclear zinc phosphodiesterase [Escherichia coli S88]
gi|226901112|gb|EEH87371.1| ribonuclease Z [Escherichia sp. 3_2_53FAA]
gi|227835678|gb|EEJ46144.1| ribonuclease Z [Escherichia coli 83972]
gi|294491729|gb|ADE90485.1| ribonuclease Z [Escherichia coli IHE3034]
gi|300299172|gb|EFJ55557.1| ribonuclease Z [Escherichia coli MS 185-1]
gi|300408589|gb|EFJ92127.1| ribonuclease Z [Escherichia coli MS 45-1]
gi|307554334|gb|ADN47109.1| ribonuclease Z [Escherichia coli ABU 83972]
gi|307626192|gb|ADN70496.1| ribonuclease Z [Escherichia coli UM146]
gi|315285864|gb|EFU45302.1| ribonuclease Z [Escherichia coli MS 110-3]
gi|315292193|gb|EFU51545.1| ribonuclease Z [Escherichia coli MS 153-1]
gi|323952064|gb|EGB47938.1| ribonuclease BN [Escherichia coli H252]
gi|323956038|gb|EGB51791.1| ribonuclease BN [Escherichia coli H263]
gi|355351307|gb|EHG00499.1| ribonuclease Z [Escherichia coli cloneA_i1]
gi|355420966|gb|AER85163.1| ribonuclease Z [Escherichia coli str. 'clone D i2']
gi|355425886|gb|AER90082.1| ribonuclease Z [Escherichia coli str. 'clone D i14']
gi|371610586|gb|EHN99114.1| ribonuclease Z [Escherichia coli H397]
gi|386250119|gb|EII96288.1| ribonuclease BN [Escherichia coli TW07793]
gi|388411125|gb|EIL71311.1| ribonuclease Z [Escherichia coli HM605]
gi|430877268|gb|ELC00724.1| ribonuclease Z [Escherichia coli KTE4]
gi|430886566|gb|ELC09421.1| ribonuclease Z [Escherichia coli KTE5]
gi|430934888|gb|ELC55235.1| ribonuclease Z [Escherichia coli KTE39]
gi|430952982|gb|ELC71896.1| ribonuclease Z [Escherichia coli KTE187]
gi|430962325|gb|ELC80182.1| ribonuclease Z [Escherichia coli KTE188]
gi|430982110|gb|ELC98829.1| ribonuclease Z [Escherichia coli KTE201]
gi|431023635|gb|ELD36830.1| ribonuclease Z [Escherichia coli KTE214]
gi|431038209|gb|ELD49178.1| ribonuclease Z [Escherichia coli KTE220]
gi|431051582|gb|ELD61245.1| ribonuclease Z [Escherichia coli KTE230]
gi|431100062|gb|ELE05078.1| ribonuclease Z [Escherichia coli KTE53]
gi|431107946|gb|ELE12110.1| ribonuclease Z [Escherichia coli KTE55]
gi|431120929|gb|ELE23927.1| ribonuclease Z [Escherichia coli KTE58]
gi|431127634|gb|ELE29934.1| ribonuclease Z [Escherichia coli KTE60]
gi|431131122|gb|ELE33205.1| ribonuclease Z [Escherichia coli KTE62]
gi|431138041|gb|ELE39881.1| ribonuclease Z [Escherichia coli KTE67]
gi|431190288|gb|ELE89688.1| ribonuclease Z [Escherichia coli KTE87]
gi|431302292|gb|ELF91480.1| ribonuclease Z [Escherichia coli KTE22]
gi|431327361|gb|ELG14706.1| ribonuclease Z [Escherichia coli KTE59]
gi|431328657|gb|ELG15961.1| ribonuclease Z [Escherichia coli KTE63]
gi|431337872|gb|ELG24960.1| ribonuclease Z [Escherichia coli KTE65]
gi|431368451|gb|ELG54919.1| ribonuclease Z [Escherichia coli KTE118]
gi|431372985|gb|ELG58647.1| ribonuclease Z [Escherichia coli KTE123]
gi|431394661|gb|ELG78194.1| ribonuclease Z [Escherichia coli KTE141]
gi|431489277|gb|ELH68905.1| ribonuclease Z [Escherichia coli KTE209]
gi|431505564|gb|ELH84170.1| ribonuclease Z [Escherichia coli KTE218]
gi|431508577|gb|ELH86849.1| ribonuclease Z [Escherichia coli KTE223]
gi|431514713|gb|ELH92554.1| ribonuclease Z [Escherichia coli KTE227]
gi|431523639|gb|ELI00776.1| ribonuclease Z [Escherichia coli KTE229]
gi|431569042|gb|ELI42004.1| ribonuclease Z [Escherichia coli KTE124]
gi|431604459|gb|ELI73868.1| ribonuclease Z [Escherichia coli KTE137]
gi|431633964|gb|ELJ02226.1| ribonuclease Z [Escherichia coli KTE153]
gi|431645104|gb|ELJ12757.1| ribonuclease Z [Escherichia coli KTE160]
gi|431660252|gb|ELJ27140.1| ribonuclease Z [Escherichia coli KTE167]
gi|431670525|gb|ELJ36878.1| ribonuclease Z [Escherichia coli KTE174]
gi|431673933|gb|ELJ40121.1| ribonuclease Z [Escherichia coli KTE176]
gi|431687448|gb|ELJ52999.1| ribonuclease Z [Escherichia coli KTE179]
gi|431688100|gb|ELJ53641.1| ribonuclease Z [Escherichia coli KTE180]
gi|431721608|gb|ELJ85602.1| ribonuclease Z [Escherichia coli KTE94]
gi|431729728|gb|ELJ93347.1| ribonuclease Z [Escherichia coli KTE97]
gi|431734204|gb|ELJ97605.1| ribonuclease Z [Escherichia coli KTE99]
gi|441710652|emb|CCQ08784.1| Ribonuclease Z [Escherichia coli Nissle 1917]
Length = 305
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAVPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|46908204|ref|YP_014593.1| metallo-beta-lactamase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47093300|ref|ZP_00231070.1| metallo-beta-lactamase family protein [Listeria monocytogenes str.
4b H7858]
gi|226224575|ref|YP_002758682.1| hypothetical protein Lm4b_01989 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254825533|ref|ZP_05230534.1| ribonuclease Z [Listeria monocytogenes FSL J1-194]
gi|254931857|ref|ZP_05265216.1| ribonuclease Z [Listeria monocytogenes HPB2262]
gi|386732712|ref|YP_006206208.1| ribonuclease Z [Listeria monocytogenes 07PF0776]
gi|417315614|ref|ZP_12102290.1| ribonuclease Z [Listeria monocytogenes J1816]
gi|424823731|ref|ZP_18248744.1| Ribonuclease Z [Listeria monocytogenes str. Scott A]
gi|56749436|sp|Q71Y44.1|RNZ_LISMF RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|259494137|sp|C1KWS1.1|RNZ_LISMC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|46881474|gb|AAT04770.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018320|gb|EAL09083.1| metallo-beta-lactamase family protein [Listeria monocytogenes
serotype 4b str. H7858]
gi|225877037|emb|CAS05746.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293583409|gb|EFF95441.1| ribonuclease Z [Listeria monocytogenes HPB2262]
gi|293594775|gb|EFG02536.1| ribonuclease Z [Listeria monocytogenes FSL J1-194]
gi|328466318|gb|EGF37475.1| ribonuclease Z [Listeria monocytogenes J1816]
gi|332312411|gb|EGJ25506.1| Ribonuclease Z [Listeria monocytogenes str. Scott A]
gi|384391470|gb|AFH80540.1| ribonuclease Z [Listeria monocytogenes 07PF0776]
Length = 306
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + + + EM +V H + S GY I L +KLK + G
Sbjct: 116 NFEEIEPGLIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 171
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T +E L AL A
Sbjct: 172 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANELEL------ALNA 225
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + AK K ++LTH SSRY
Sbjct: 226 DILVHEATFEGDKAKM--AGEYMHSTTLQAANLAKTANVKKLILTHISSRY 274
>gi|300855840|ref|YP_003780824.1| ribonuclease Z [Clostridium ljungdahlii DSM 13528]
gi|300435955|gb|ADK15722.1| ribonuclease Z [Clostridium ljungdahlii DSM 13528]
Length = 303
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 109 CPTRAIQQNFVFITHGHLDHIGGLP---MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165
C + I + + TH H DHI GLP + +A+ G N+ P TI P +++ +E L I
Sbjct: 49 CKIKNI--DVILFTHFHADHIAGLPGLLLTIANSG-RNM-PITIIGPIGLRKVIEGLMVI 104
Query: 166 HRSLGNVELNLDLVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIYLLR-------KK 217
L +++L+ L E+Y E D + H +P Y I + R K
Sbjct: 105 APVL---PYSINLLELCGKESYFEKIGDFNIDVLPVDHGMPCFAYSIGVDRNRKFDRDKA 161
Query: 218 LKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS----EFMLNPRNADAL---- 269
LK Q + +++K +K +E + I +PE+ GD S + + R L
Sbjct: 162 LKNQVPLILWNRLQKGEK--IEYGEKIYTPEMVL-GDKRSGLKVSYCTDSRPTHELAQFV 218
Query: 270 -RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
++ + I E + +DE +I A Q+ H SE AK + LTHFS
Sbjct: 219 EKSDVFICEGMYGEDE-NISKAIQYKHMLFSEAAALAKRAEVGELWLTHFS 268
>gi|188535435|ref|YP_001909232.1| ribonuclease Z [Erwinia tasmaniensis Et1/99]
gi|254808637|sp|B2VHF1.1|RBN_ERWT9 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|188030477|emb|CAO98371.1| Ribonuclease Z [Erwinia tasmaniensis Et1/99]
Length = 304
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 114/273 (41%), Gaps = 43/273 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DH+ GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHLFGLPGLLTSRSMNGCVEPMTLYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
IK VE + S + L+++ + GE ++ + V + H + GY I L
Sbjct: 96 IKTFVETSLSLSGSW--LTFPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRIDEL 152
Query: 215 RK--KLKKQYIHL----KGKQIEKLKKS-GVEITD------------IILSPEVAFTGDT 255
K L Q + G +LK+ V + D I +A GDT
Sbjct: 153 DKPGALDAQKLAAHGVPAGPHFYQLKQGRSVTLDDGRVINGWDYVGSKIKGRSLAIFGDT 212
Query: 256 TSEFMLNPRNADALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVL 314
+ + A I++ EAT E+++E A GH+ + A+ K ++
Sbjct: 213 SPTAAASELAAG---VDIMVHEATL---EVAMEEKANGRGHSSTVQAARVAQQSGAKKLI 266
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
+TH SSRY D + + + ++ V P TE
Sbjct: 267 ITHLSSRYLHHDCERLLAECRA-----VFPHTE 294
>gi|440286829|ref|YP_007339594.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
gi|440046351|gb|AGB77409.1| RNAse Z [Enterobacteriaceae bacterium strain FGI 57]
Length = 305
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 32/239 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + N+ P T++ P ++E VE + S + + +
Sbjct: 60 IFITHLHGDHLFGLPGLLCSRSMAGNMNPVTLYGPKGLREFVETTLRLSGSWTDYPMEI- 118
Query: 178 LVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVI------------YLLRKKLKKQ--Y 222
++V + M + + V + +H + GY + L+ +K +
Sbjct: 119 ---VEVSAGFVMDDGLRKVTAYPLNHPVECYGYRVEEHDKPGALDAKALINAGVKPGPLF 175
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI-LIT 276
LK L+ V LSP +A GDT A AL + ++
Sbjct: 176 QQLKDGLCVTLEDGRVIDGRDYLSPNTPGKTLAIFGDTAP-----CEGASALAHGVDMMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
T L+ M E A GH+ + E A+ +++TH SSRY E R+ + + +
Sbjct: 231 HETTLETAME-EKANSRGHSSTRQAAELARDAGVGRLVITHVSSRYDAEGCRRMLAECR 288
>gi|409200642|ref|ZP_11228845.1| ribonuclease Z [Pseudoalteromonas flavipulchra JG1]
Length = 299
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPP-SIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH GLP ++S L + K P + P ++ + V+ F +L V L+ D
Sbjct: 40 ICITHLHGDHCYGLPGLISSMALNSRKAPLKLIAPRAVIQFVQSCF----TLTEVRLSFD 95
Query: 178 LVALDVGETYEMRNDIV------VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
L+ + + E ND + + H +PS GY KL ++ I K K I+
Sbjct: 96 LITIALEEI----NDKLQLECCDIETIALQHRVPSVGY-------KLTEKCIPRKLK-ID 143
Query: 232 KLKKSGV----EITDIILSPEVAFTG-----DTTSEFMLNPRNA----DALRAKIL---I 275
KL++ G+ + +V + G D S + PR A D + +L I
Sbjct: 144 KLQQDGIASGGHYNLLQKGQDVEYQGRLLTSDDYSFYSWQPRVAIICGDNEKPGLLSQMI 203
Query: 276 TEATFLDDEMSIEHAQQH------GHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L E + A H GH+ I + A+ + + LTHFS RYH E + Q
Sbjct: 204 KGVDLLVHEATFTAADLHKVGFHTGHSDAKRIAQFAQLHQVPMLALTHFSVRYHGEGMLQ 263
Query: 330 AVLK 333
+++
Sbjct: 264 PLIE 267
>gi|422878575|ref|ZP_16925041.1| ribonuclease Z [Streptococcus sanguinis SK1059]
gi|422928425|ref|ZP_16961367.1| ribonuclease Z [Streptococcus sanguinis ATCC 29667]
gi|422931401|ref|ZP_16964332.1| ribonuclease Z [Streptococcus sanguinis SK340]
gi|332367001|gb|EGJ44741.1| ribonuclease Z [Streptococcus sanguinis SK1059]
gi|339616749|gb|EGQ21390.1| ribonuclease Z [Streptococcus sanguinis ATCC 29667]
gi|339619701|gb|EGQ24276.1| ribonuclease Z [Streptococcus sanguinis SK340]
Length = 309
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT A+ A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRKT---AASVCLAVAADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|399517470|ref|ZP_10759020.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
gi|398647594|emb|CCJ67047.1| Ribonuclease Z [Leuconostoc pseudomesenteroides 4882]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 41/262 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
IK+ V+ + + + ++ VAL G ++ ++ P + H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPINYVALQEGIIFDDPTFQVIAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EF 259
LL KL+ + I G +LK V + D + + G+T
Sbjct: 152 VEKDHPGELLVDKLRAENIP-SGPIYGRLKAGKTVTLADGRTISGLDYIGETQKGRVVTL 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+L+ R D A A +L+ E+T+ + + A+ H H+ AK + ++
Sbjct: 211 ILDTRPNDNIALLAHHADVLVHESTYGASDEESKMARAHAHSTSINAANVAKKAQVGKLV 270
Query: 315 LTHFSSRY-------HIEDIRQ 329
LTH S+RY I+D+R+
Sbjct: 271 LTHLSARYVGPLVKNLIQDVRK 292
>gi|420373682|ref|ZP_14873747.1| ribonuclease Z [Shigella flexneri 1235-66]
gi|391317016|gb|EIQ74399.1| ribonuclease Z [Shigella flexneri 1235-66]
Length = 305
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE + I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETVLRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|30264217|ref|NP_846594.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47529660|ref|YP_021009.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49187047|ref|YP_030299.1| ribonuclease Z [Bacillus anthracis str. Sterne]
gi|65321533|ref|ZP_00394492.1| COG1234: Metal-dependent hydrolases of the beta-lactamase
superfamily III [Bacillus anthracis str. A2012]
gi|165871127|ref|ZP_02215777.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167633571|ref|ZP_02391895.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|167639504|ref|ZP_02397775.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|170687270|ref|ZP_02878488.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|170705861|ref|ZP_02896324.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|177652639|ref|ZP_02935055.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190566047|ref|ZP_03018966.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|196034932|ref|ZP_03102339.1| ribonuclease Z [Bacillus cereus W]
gi|218905280|ref|YP_002453114.1| ribonuclease Z [Bacillus cereus AH820]
gi|227816920|ref|YP_002816929.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228929191|ref|ZP_04092218.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935464|ref|ZP_04098282.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947861|ref|ZP_04110148.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229123664|ref|ZP_04252859.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|229600192|ref|YP_002868439.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|254683907|ref|ZP_05147767.1| ribonuclease Z [Bacillus anthracis str. CNEVA-9066]
gi|254721742|ref|ZP_05183531.1| ribonuclease Z [Bacillus anthracis str. A1055]
gi|254736255|ref|ZP_05193961.1| ribonuclease Z [Bacillus anthracis str. Western North America
USA6153]
gi|254744144|ref|ZP_05201827.1| ribonuclease Z [Bacillus anthracis str. Kruger B]
gi|254754073|ref|ZP_05206108.1| ribonuclease Z [Bacillus anthracis str. Vollum]
gi|254758234|ref|ZP_05210261.1| ribonuclease Z [Bacillus anthracis str. Australia 94]
gi|386738036|ref|YP_006211217.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|421506406|ref|ZP_15953329.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|421638225|ref|ZP_16078821.1| ribonuclease Z [Bacillus anthracis str. BF1]
gi|41017543|sp|Q81M88.1|RNZ_BACAN RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808605|sp|C3P7S4.1|RNZ_BACAA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808606|sp|C3LJR8.1|RNZ_BACAC RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|254808607|sp|B7JLZ5.1|RNZ_BACC0 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|30258862|gb|AAP28080.1| ribonuclease Z [Bacillus anthracis str. Ames]
gi|47504808|gb|AAT33484.1| ribonuclease Z [Bacillus anthracis str. 'Ames Ancestor']
gi|49180974|gb|AAT56350.1| metallo-beta-lactamase family protein [Bacillus anthracis str.
Sterne]
gi|164713046|gb|EDR18573.1| ribonuclease Z [Bacillus anthracis str. A0488]
gi|167512563|gb|EDR87938.1| ribonuclease Z [Bacillus anthracis str. A0193]
gi|167530977|gb|EDR93664.1| ribonuclease Z [Bacillus anthracis str. A0442]
gi|170129401|gb|EDS98265.1| ribonuclease Z [Bacillus anthracis str. A0389]
gi|170668887|gb|EDT19632.1| ribonuclease Z [Bacillus anthracis str. A0465]
gi|172081974|gb|EDT67042.1| ribonuclease Z [Bacillus anthracis str. A0174]
gi|190562966|gb|EDV16932.1| ribonuclease Z [Bacillus anthracis str. Tsiankovskii-I]
gi|195992471|gb|EDX56432.1| ribonuclease Z [Bacillus cereus W]
gi|218539378|gb|ACK91776.1| ribonuclease Z [Bacillus cereus AH820]
gi|227005393|gb|ACP15136.1| ribonuclease Z [Bacillus anthracis str. CDC 684]
gi|228659799|gb|EEL15444.1| Ribonuclease Z [Bacillus cereus 95/8201]
gi|228811848|gb|EEM58182.1| Ribonuclease Z [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824216|gb|EEM70030.1| Ribonuclease Z [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830481|gb|EEM76091.1| Ribonuclease Z [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|229264600|gb|ACQ46237.1| ribonuclease Z [Bacillus anthracis str. A0248]
gi|384387888|gb|AFH85549.1| Ribonuclease Z [Bacillus anthracis str. H9401]
gi|401823399|gb|EJT22546.1| ribonuclease Z [Bacillus anthracis str. UR-1]
gi|403394651|gb|EJY91891.1| ribonuclease Z [Bacillus anthracis str. BF1]
Length = 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEIGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGNDFIGPPQKGRVITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|302338444|ref|YP_003803650.1| ribonuclease Z [Spirochaeta smaragdinae DSM 11293]
gi|301635629|gb|ADK81056.1| ribonuclease Z [Spirochaeta smaragdinae DSM 11293]
Length = 309
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 38/236 (16%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + + S + +P TI PP IKE V E RS+ ++ +N +
Sbjct: 58 IFISHTHADHVTGLPGIMMLSSQVDREEPLTIIGPPKIKEYV----ETARSVLDMYINYE 113
Query: 178 LVALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH---------LK 226
++ ++ E+ VR F H P GYV L + + H +
Sbjct: 114 VIIKEINAPCEVYRGEGYAVRAFPLLHSKPCVGYV---LEEDTRPGIFHPERAAELGVPR 170
Query: 227 GKQIEKLKKSG-VEITD-IILSPE-----------VAFTGDTTSEFMLNPRNADALRAKI 273
G +L++ G V+ +D + PE A+ DT + +D + +
Sbjct: 171 GPLWSRLQQGGVVQASDGTSVFPEQVMGDKRSGRKFAYVTDTKYIPEIASHVSD---SDL 227
Query: 274 LITEATFLDD-EMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIR 328
LI E FL D E S + + I ++A I+ L H+S RY + D+R
Sbjct: 228 LICEGMFLSDLEESAAEKKHLTAKQAATIAKDAGGIKKMG--LIHYSPRYTMRDLR 281
>gi|120555084|ref|YP_959435.1| ribonuclease Z [Marinobacter aquaeolei VT8]
gi|166991482|sp|A1U2M9.1|RNZ_MARAV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|120324933|gb|ABM19248.1| RNAse Z [Marinobacter aquaeolei VT8]
Length = 323
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 110/261 (42%), Gaps = 28/261 (10%)
Query: 87 SIGGHETCVIIPELKCAFDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVAS 138
++ G C+ P+ D G R +Q +FITH H DHI GLP + S
Sbjct: 18 NVTGLALCLSGPKPWYLVDCGEGTQHQLMRTRYSVMQLRAMFITHIHGDHIFGLPGLLTS 77
Query: 139 RGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRP 197
+ +P I PP ++ ++ + E S ++ L+ + + + Y + + V
Sbjct: 78 ASMLGRTEPLDIIAPPQVRRFIDAVIE--NSDSSLSYPLNFINSEAPDFYWQDDHLGVTN 135
Query: 198 FKTHHVIPSQGYVI--YLLRKKLKKQYIHLKG----KQIEKLKKSGVEITD---IILSPE 248
H +P + YV L ++L+K+ + G Q L+K + D ++ S +
Sbjct: 136 VALSHRVPCRAYVFTERNLERQLQKEKLVADGIEPGPQWGDLQKGKDVLLDDGRLLRSND 195
Query: 249 VAFTGDTTSEFMLNPRN------ADALRAK-ILITEATFLDDEMSIEHAQQHGHTHLSEI 301
T + ++ N DA + +LI EAT+ D ++ H+ ++
Sbjct: 196 YTHIPRTARKIIVGGDNDTPELLKDACQGTHVLIHEATYTQD-VADRVGPWPQHSSAQQV 254
Query: 302 IENAKWIRNKAVLLTHFSSRY 322
A+ + ++LTHFSSRY
Sbjct: 255 ARFAQATKLPNLVLTHFSSRY 275
>gi|60594108|pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z
gi|60594109|pdb|1Y44|B Chain B, Crystal Structure Of Rnase Z
Length = 320
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 35/247 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + T++ P IK +E + ++ ++ L
Sbjct: 59 IFITHXHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKT--HLTYPLA 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIE 231
+ ++ G +E + +V H + + GY + L+ + K+ G +
Sbjct: 117 IQEIEEGIVFE-DDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEXNIPPGPVYQ 175
Query: 232 KLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
K+KK G +T D + P+ V F+GDT L D + + E
Sbjct: 176 KIKK-GETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARD---CDVXVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
ATF ++ + + H T + + AK R K ++LTH S+RY + A L+LQ K
Sbjct: 232 ATFAKEDRKLAYDYYHSTTEQAAV--TAKEARAKQLILTHISARYQGD----ASLELQ-K 284
Query: 338 VSAKVVP 344
+ V P
Sbjct: 285 EAVDVFP 291
>gi|300818132|ref|ZP_07098344.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|415876919|ref|ZP_11543242.1| ribonuclease Z [Escherichia coli MS 79-10]
gi|300529276|gb|EFK50338.1| ribonuclease Z [Escherichia coli MS 107-1]
gi|342928273|gb|EGU96995.1| ribonuclease Z [Escherichia coli MS 79-10]
Length = 305
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKIIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|221059135|ref|XP_002260213.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810286|emb|CAQ41480.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 950
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 49/212 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY--NLKPPTIFVPPSIKEDV----EKLFEIHRSLGNV 172
VFI+H H DH GL + R L +L P I +P ++K + E F+ ++
Sbjct: 727 VFISHAHADHHMGLYYLLHMRRLLFPHLDDPLILIPSTLKSWMNLFNELFFDKPVNVLYN 786
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
E NL+ V VG+ + +RPFK HV S G I ++GK I
Sbjct: 787 EENLE-VKEKVGDDDSF---VFLRPFKVKHVKESYG--------------IKIEGKNI-- 826
Query: 233 LKKSGVEITDIILSPEVAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHA 290
V ++ DT +N D ILI EATF DDE+ ++ A
Sbjct: 827 --------------GSVVYSADTRPCDNVKTFSKNCD-----ILIHEATF-DDEL-LDEA 865
Query: 291 QQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
H+ E ++ + + K ++LTHFS RY
Sbjct: 866 IYKNHSTTHEAMQISLEVECKTLILTHFSQRY 897
>gi|405750324|ref|YP_006673790.1| ribonuclease Z [Listeria monocytogenes ATCC 19117]
gi|405753197|ref|YP_006676662.1| ribonuclease Z [Listeria monocytogenes SLCC2378]
gi|406704755|ref|YP_006755109.1| ribonuclease Z [Listeria monocytogenes L312]
gi|424714846|ref|YP_007015561.1| Ribonuclease Z [Listeria monocytogenes serotype 4b str. LL195]
gi|404219524|emb|CBY70888.1| ribonuclease Z [Listeria monocytogenes ATCC 19117]
gi|404222397|emb|CBY73760.1| ribonuclease Z [Listeria monocytogenes SLCC2378]
gi|406361785|emb|CBY68058.1| ribonuclease Z [Listeria monocytogenes L312]
gi|424014030|emb|CCO64570.1| Ribonuclease Z [Listeria monocytogenes serotype 4b str. LL195]
Length = 310
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 63 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 119
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + + + EM +V H + S GY I L +KLK + G
Sbjct: 120 NFEEIEPGLIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKADGVE-AG 175
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T +E L AL A
Sbjct: 176 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANELEL------ALNA 229
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + AK K ++LTH SSRY
Sbjct: 230 DILVHEATFEGDKAKM--AGEYMHSTTLQAANLAKTANVKKLILTHISSRY 278
>gi|403268077|ref|XP_003926113.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Saimiri
boliviensis boliviensis]
Length = 363
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 108/269 (40%), Gaps = 73/269 (27%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+FITH H DH GLP + + S + + +P I+ P +++ + + E L + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSIVSKQPIEIYGPVGLRDFIWRTME----LSHTE 113
Query: 174 LNLDLVA-------------------------------------LDVGE-TYEMRND--I 193
L V LD E +Y + +D
Sbjct: 114 LVFHYVVHELVPTADQCPAEELKEFIPVNRAGSPPKEEQGRTILLDSEENSYLLFDDEQF 173
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKKSGVEI---TDII 244
VV+ F+ H IPS G+ + ++ K LK G KLK +G+ + +I
Sbjct: 174 VVKAFRLFHRIPSFGFSVLEKKRPGKLNAQKLKDLGVPPGPAYGKLK-NGISVVLENGVI 232
Query: 245 LSPE-----------VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+SP+ + GD S + + A +LI EAT D +M + A++H
Sbjct: 233 ISPQDVLKKPIVGRKICILGDC-SGVVGDEGVKLCFEADLLIHEATLDDAQM--DKAKEH 289
Query: 294 GHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
GH+ AK R K ++LTHFS RY
Sbjct: 290 GHSTPQMAATFAKLCRAKRLVLTHFSQRY 318
>gi|238855214|ref|ZP_04645533.1| ribonuclease Z [Lactobacillus jensenii 269-3]
gi|260664577|ref|ZP_05865429.1| ribonuclease Z [Lactobacillus jensenii SJ-7A-US]
gi|313471958|ref|ZP_07812450.1| ribonuclease Z [Lactobacillus jensenii 1153]
gi|238832106|gb|EEQ24424.1| ribonuclease Z [Lactobacillus jensenii 269-3]
gi|239529111|gb|EEQ68112.1| ribonuclease Z [Lactobacillus jensenii 1153]
gi|260561642|gb|EEX27614.1| ribonuclease Z [Lactobacillus jensenii SJ-7A-US]
Length = 309
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R + P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRPRKITKIFISHNHGDHIFGLPGLLSTRSFQGEVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+++ V I ++ V + V L + ++ V K H + S G+ +
Sbjct: 96 LEQFVTTALRISKT--KVSYPIHFVELKDDQKIFENSEFSVYCKKLDHRVASFGFRVVEK 153
Query: 212 ----YLLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT 255
LL KL ++ LK ++ +L+ V L PE V DT
Sbjct: 154 SHPGVLLMDKLAPYHLPNGPILGQLKAGKVVELEDGRVLNGKDFLGPEKKGRIVTIIYDT 213
Query: 256 TSEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+ P A+ A A +L+ E+TF E + A+ + H+ ++ E AK K +
Sbjct: 214 R----ITPSIAELAQDADVLVHESTFAGPEGKM--AKAYYHSTATQAAEIAKKANVKRLF 267
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 268 LTHVSARY 275
>gi|171186168|ref|YP_001795087.1| ribonuclease Z [Pyrobaculum neutrophilum V24Sta]
gi|254808679|sp|B1YAJ2.1|RNZ_THENV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|170935380|gb|ACB40641.1| Ribonuclease Z [Pyrobaculum neutrophilum V24Sta]
Length = 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 46/223 (20%)
Query: 119 VFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKL-FEIHRSLGNVELNL 176
V ITH H DH GLP + + SR L + P S+ + +E L E+ S G L +
Sbjct: 60 VAITHQHEDHTLGLPGLVITSRFLGGRT--AVLAPRSMHKALEALGVEVMDSYGGDRLRV 117
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL---LRKKLKKQYIHLKGKQIEKL 233
V + H + + G++ + L K + +
Sbjct: 118 SCV-------------------EVCHTVDACGWLFQWDVGYKLDLSKAAGLPRWALTSLI 158
Query: 234 KKSGVEITDIILSPE------------VAFTGDTTS--EFMLNPRNADALRAKILITEAT 279
+ S VE+ ++ PE + +TGDT E D +LI EAT
Sbjct: 159 RGSPVEVGGRLIKPEDVAEPGHKRLRRLLYTGDTAPCPEMWRKVGEVD-----VLIHEAT 213
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
F DD + + A + GH+ +++ +E AK + ++LTH SSRY
Sbjct: 214 FADD-VEPQKAHEEGHSTVADAVEAAKALNAGVLILTHVSSRY 255
>gi|423358819|ref|ZP_17336322.1| ribonuclease Z [Bacillus cereus VD022]
gi|401084691|gb|EJP92937.1| ribonuclease Z [Bacillus cereus VD022]
Length = 307
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL +L + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDQLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAEDE---QQAHDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|419914528|ref|ZP_14432923.1| ribonuclease Z [Escherichia coli KD1]
gi|388386273|gb|EIL47923.1| ribonuclease Z [Escherichia coli KD1]
Length = 305
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 111/255 (43%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYEMRNDIV--VRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ D + V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFD---DGLHKVTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|292490002|ref|YP_003532894.1| ribonuclease Z [Erwinia amylovora CFBP1430]
gi|292901024|ref|YP_003540393.1| ribonuclease Z [Erwinia amylovora ATCC 49946]
gi|428786988|ref|ZP_19004464.1| ribonuclease Z [Erwinia amylovora ACW56400]
gi|291200872|emb|CBJ48007.1| ribonuclease Z [Erwinia amylovora ATCC 49946]
gi|291555441|emb|CBA23898.1| ribonuclease Z [Erwinia amylovora CFBP1430]
gi|312174192|emb|CBX82445.1| ribonuclease Z [Erwinia amylovora ATCC BAA-2158]
gi|426274455|gb|EKV52197.1| ribonuclease Z [Erwinia amylovora ACW56400]
Length = 304
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 49/257 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + ++P T++ PP IK VE + S + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPPGIKTFVETSLSLSGSW--LTFPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-----------------------YLL 214
++ + GE ++ V + H + GY I Y
Sbjct: 117 IIEIGAGEVFQ-DAQFRVTAYPLTHPVECYGYRIDEHDKPGALDAPKLAAHGIPAGPYFY 175
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD---ALRA 271
K + G+ I G +I +A GDT P A A
Sbjct: 176 DLKQGRSVTLADGRVINGWDYVGGKIK----GRSLAIFGDTA------PTAAAVELASEV 225
Query: 272 KILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ EAT E+++E A GH+ + A+ K +++TH SSRY D +
Sbjct: 226 DVIVHEATL---EVAMEEKANGRGHSSTVQAARVAQQSGAKKLIITHLSSRYLHHDYERL 282
Query: 331 VLKLQSKVSAKVVPLTE 347
+ + ++ V P TE
Sbjct: 283 LAECRA-----VFPHTE 294
>gi|422848467|ref|ZP_16895143.1| ribonuclease Z [Streptococcus sanguinis SK115]
gi|422876151|ref|ZP_16922621.1| ribonuclease Z [Streptococcus sanguinis SK1056]
gi|325690509|gb|EGD32512.1| ribonuclease Z [Streptococcus sanguinis SK115]
gi|332360959|gb|EGJ38763.1| ribonuclease Z [Streptococcus sanguinis SK1056]
Length = 309
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 101/240 (42%), Gaps = 41/240 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR--- 270
G+ I + + D I +P +A GDT + A ++R
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTR-------KTAASVRLAV 228
Query: 271 -AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
A +L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 229 AADVLVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|291540989|emb|CBL14100.1| RNAse Z [Roseburia intestinalis XB6B4]
Length = 358
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + S G P + P + +E++ R + EL
Sbjct: 107 DVICFTHYHADHISGLPGLLLSMGNAERTEPLTMIGP---KGLERVVGALRMIAP-ELPF 162
Query: 177 DLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-----------KKLKKQY 222
++ +++ E E+ N + F+ +H I GY + + R +++ ++Y
Sbjct: 163 EIRYIEIMEPEADIEI-NGYHIHAFRVNHNITCYGYTVEIRRAGRFSVEHAKEREIPQKY 221
Query: 223 IHL--KGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAK 272
+ KG++IE + G T D++L +V + DT T + + +N+D
Sbjct: 222 WNRLQKGEEIE--TEDGAHYTPDMVLGAARKGIKVTYCTDTRPTESLVASAKNSD----- 274
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS-SRYHIED 326
+LI E + + E I A+Q+ H E E AK + LTHFS S H ED
Sbjct: 275 LLICEGMYAEKE-KIAKAKQYKHMTFYEAAEVAKKAEVAEMWLTHFSPSLVHAED 328
>gi|163791324|ref|ZP_02185737.1| metal-dependent hydrolase of the beta-lactamase superfamily III
(putative) [Carnobacterium sp. AT7]
gi|159873403|gb|EDP67494.1| metal-dependent hydrolase of the beta-lactamase superfamily III
(putative) [Carnobacterium sp. AT7]
Length = 312
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 108/252 (42%), Gaps = 40/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK V + + LN
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDGPLTIYGPVGIKNYVLTCLKTSGTALKYSLNFH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ D G +E + V K H I S GY I L KLK+ I G
Sbjct: 119 EIVED-GILFE-DSHFKVSCGKLKHGIQSFGYRIEEADHQGMLQADKLKEAGIPF-GPLF 175
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
KLK+ G IT D I + V GDT T +L +NA +L
Sbjct: 176 GKLKQ-GKTITLEDGRVFNGQDFIGETQKGRIVTILGDTKKTENNVLLAKNA-----SVL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E+TF D + + A+ + H+ + + AK +LLTH S+RY +D+ L
Sbjct: 230 VHESTF--DGANQKMARDYNHSTNIDAAQVAKEAGVDKLLLTHISARYLGKDVY-----L 282
Query: 335 QSKVSAKVVPLT 346
K + KV P T
Sbjct: 283 LEKEAKKVFPNT 294
>gi|339490858|ref|YP_004705363.1| metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc sp. C2]
gi|338852530|gb|AEJ30740.1| metal-dependent hydrolase of the beta-lactamase superfamily
III(putative) [Leuconostoc sp. C2]
Length = 314
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 38/250 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI- 211
+KE V+ I + + + L G +E + V+ K H I + GY +
Sbjct: 96 KGVKEYVQTALRISET--RLSYPIVYAELKEGVIFEDKTFRVIGA-KMRHRIETWGYRVE 152
Query: 212 ------YLLRKKLKKQYI-------HLKGKQIEKLKKSGV-EITDIILSPEVAFTGDTTS 257
LL KL+++ I LK ++ L V + D I + +
Sbjct: 153 EKDHPGELLVDKLRQENIPSGPIFGQLKAGKVVTLPDGRVLDGQDYIGARQKG----RVV 208
Query: 258 EFMLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
F+L+ R D A A +L+ E+T+ E + A+ H H+ A+
Sbjct: 209 TFILDTRPNDNVEILADHADVLVHESTYGAGEEEAKMARAHAHSTSVTAANVAQRAHVDK 268
Query: 313 VLLTHFSSRY 322
++LTH S+RY
Sbjct: 269 LVLTHLSARY 278
>gi|239502887|ref|ZP_04662197.1| Ribonuclease Z [Acinetobacter baumannii AB900]
gi|421676934|ref|ZP_16116829.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
gi|410393891|gb|EKP46242.1| putative ribonuclease Z [Acinetobacter baumannii OIFC111]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 111 TRAIQQNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168
TR QN + ITH H DH GL +AS G+ P + + P +++++ FEI
Sbjct: 49 TRLSLQNLIAICITHVHGDHCYGLVGLLASAGMNARSKPLVVIAP---KEIQQWFEITAQ 105
Query: 169 LGNVELNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYI 223
L ++ L + +DV E ++ +++ ++ H +PS + IY+ +KK+ Q +
Sbjct: 106 LTDLHLPYSIKFIDVNEATQPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQAL 165
Query: 224 HL----KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNAD 267
KG LK+ VE IL + GD +L A+
Sbjct: 166 TQLGVPKGDIWGHLKRGYDVEFEGRILKSQDFIKIQNQQVHAIIGGDNDRPELL----AN 221
Query: 268 ALR-AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
A + A++LI EAT+L + + + H+ + E A+ ++LTHFS R+ +
Sbjct: 222 ACKNAQLLIHEATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKT 280
Query: 327 IRQAV 331
+QA+
Sbjct: 281 GQQAI 285
>gi|289435320|ref|YP_003465192.1| metallo-beta-lactamase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171564|emb|CBH28110.1| metallo-beta-lactamase family protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 306
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 107/242 (44%), Gaps = 36/242 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR TI+ P I+ VE + L L
Sbjct: 59 IFITHMHGDHIFGLPGLLSSRSFQGGDSDLTIYGPVGIQAYVETSLK----LSGTRLTYK 114
Query: 178 LVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE----- 231
++ ++ +++ V + H + S GY I K+ LK +E
Sbjct: 115 IIFEEIEPGLIFEDEMFTVTADELDHGMLSYGYRIVEKDKQGALDAARLKEDGVEPGPIF 174
Query: 232 -KLKKS-------GVEIT--DIILSPE----VAFTGD---TTSEFMLNPRNADALRAKIL 274
+LK G EI + I +P+ ++ GD T SEF L NAD IL
Sbjct: 175 QRLKNGEVVTLPDGREIDGENYIGAPQKGKIISIFGDTRETASEFAL-AENAD-----IL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
I EATF D+ + A ++ H+ + E AK K ++LTH SSRY E + +++
Sbjct: 229 IHEATFEGDKGKM--AAEYMHSTTIQAAELAKKAGVKKLILTHISSRYDREASKALLIEA 286
Query: 335 QS 336
+S
Sbjct: 287 KS 288
>gi|322372782|ref|ZP_08047318.1| ribonuclease Z [Streptococcus sp. C150]
gi|321277824|gb|EFX54893.1| ribonuclease Z [Streptococcus sp. C150]
Length = 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 39/265 (14%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP ++ASR + + T ++ P
Sbjct: 36 FDCGEGTQRQILETTIKPRKVKKIFITHMHGDHIFGLPGFLASRSFQSSEEQTDLEVYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGE-TYEMRND-IVVRPFKTHHVIPSQGYV 210
IK+ V + + S + + +DV + M ND V K H I GY
Sbjct: 96 VGIKQYV--MTSLRTSGTRLPYRVHFTEIDVHKLGLVMENDKFAVYADKLDHTIFCVGYR 153
Query: 211 IYL--LRKKLKKQYIHLKG-------KQIEK----LKKSGVEI--TDIILSPE----VAF 251
+ L L + + G QI+ + ++G +I D I +P+ +
Sbjct: 154 VVQKDLEGTLDAEALKAAGVPFGPLFGQIKNGQDVVLENGTKIIAKDYISAPKKGKVITI 213
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
GDT N L A +L+ E+T+ + +I A+ HGH+ + + AK K
Sbjct: 214 LGDTRKT---NASVRLGLGADVLVHESTYGKGDENI--AKSHGHSTNIQAAQVAKDASAK 268
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQS 336
+LL H S+R+ DI + Q+
Sbjct: 269 RLLLNHVSARFLGRDIGRMAADAQT 293
>gi|257054875|ref|YP_003132707.1| ribonuclease Z [Saccharomonospora viridis DSM 43017]
gi|256584747|gb|ACU95880.1| RNAse Z [Saccharomonospora viridis DSM 43017]
Length = 306
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL---FEIH 166
P AI V +TH H DH GLP + L + P S +E E+L H
Sbjct: 52 PASAITH--VCLTHFHGDHCLGLPGVIQRLSLDGVHRVHAHYPASGQEYFERLRHASSFH 109
Query: 167 RSLGNVELNLDLVAL----DVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222
+ VE+ + + D GE + R D V F V P + ++ +L + Y
Sbjct: 110 ETTEVVEVPIAADGVVAQGDFGELWARRLDHPVEAFGYQLVEPDRRTML----PRLLRHY 165
Query: 223 IHLKGKQIEKLKKSG--------VEITDIIL---SPEVAFTGDTTSEFMLNPRNADALRA 271
+ G + +L+++G V + D+ + AF DT + + A A +A
Sbjct: 166 -GISGADVGRLRRAGTLDVNGRTVNVEDVSVLRAGQRFAFVMDTR---LCDNVFALAEKA 221
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TFL E + A+++GH + A + ++LTHFS RY
Sbjct: 222 DLLVIESTFLTTEAEL--AEEYGHLTARQAARVAAESAVRTLVLTHFSQRY 270
>gi|227509461|ref|ZP_03939510.1| ribonuclease Z [Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227191173|gb|EEI71240.1| ribonuclease Z [Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 315
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 39/250 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + + +FI+H H DHI GLP ++SR +P I+ P
Sbjct: 37 FDVGEGTQHQILRSTIRPRKIDKIFISHLHGDHIFGLPGLLSSRSFQGGFEPLDIYGPKG 96
Query: 155 IKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY- 212
IKE VE +I S + ++ +L G +E N V H I S GY +
Sbjct: 97 IKEYVEVSLKISESHLSYKIRFHELTKQTNGLIFE-DNKFSVYAAPLDHRILSIGYRVVE 155
Query: 213 ------LLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGD 254
L+ KL + +I LK + L V ++ P V GD
Sbjct: 156 HDHPGELMVDKLTQLHIPSGPVYGRLKKGETVTLDDGRVVDGKQMIGPAQPGRIVTIIGD 215
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T T + RNAD +L+ E+T E + A+ H H+ + + AK K
Sbjct: 216 TRKTENAVKLARNAD-----VLVHESTLGKSETKL--ARSHYHSTNVQAAQIAKKAHVKK 268
Query: 313 VLLTHFSSRY 322
+LL H S+RY
Sbjct: 269 LLLNHISARY 278
>gi|220912820|ref|YP_002488129.1| ribonuclease Z [Arthrobacter chlorophenolicus A6]
gi|219859698|gb|ACL40040.1| Ribonuclease Z [Arthrobacter chlorophenolicus A6]
Length = 298
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 32/255 (12%)
Query: 113 AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172
A Q + +TH H DH GLP ++ L + P P+ EDV R+L +V
Sbjct: 51 ATQVTRICLTHVHGDHCFGLPGVLSRMVLDGVNHPVHLHYPAAGEDVV------RALVSV 104
Query: 173 EL-NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYI-HL----- 225
LDL G E+ + + +RP K H I + G Y L + + ++ HL
Sbjct: 105 STPGLDLKLHPHGAAGEVADGLHIRPLK--HRIETYG---YRLTEPGGRTFLPHLLAAAG 159
Query: 226 -KGKQIEKLKK----SGVEITDIIL---SPEVAFTGDTTSEFMLNPRNADALRAKILITE 277
G + +L++ +GV + D+ + AF DT + A A +L+ E
Sbjct: 160 IAGPDVGRLRREGALAGVGLADVSVPRPGQRFAFVMDTAP---CDGAEDLADGADLLVAE 216
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSK 337
+TF DD+ + A ++ H + + A + ++LTHFSSRY D+ + ++
Sbjct: 217 STFSDDDGGL--AGEYRHLTAGQAGDLAGRGSVRTLVLTHFSSRYG-NDVSLLARQASAR 273
Query: 338 VSAKVVPLTEGFKSV 352
+ V E + +
Sbjct: 274 ANGATVIAAEDLQRI 288
>gi|422821010|ref|ZP_16869203.1| ribonuclease Z [Streptococcus sanguinis SK353]
gi|422851395|ref|ZP_16898065.1| ribonuclease Z [Streptococcus sanguinis SK150]
gi|324991628|gb|EGC23561.1| ribonuclease Z [Streptococcus sanguinis SK353]
gi|325694700|gb|EGD36606.1| ribonuclease Z [Streptococcus sanguinis SK150]
Length = 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 99/236 (41%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT + A+ A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDTRK---TSASVRLAVAADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|417308736|ref|ZP_12095577.1| Ribonuclease Z [Escherichia coli PCN033]
gi|338769364|gb|EGP24143.1| Ribonuclease Z [Escherichia coli PCN033]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTIILEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|422858229|ref|ZP_16904879.1| ribonuclease Z [Streptococcus sanguinis SK1057]
gi|327461200|gb|EGF07533.1| ribonuclease Z [Streptococcus sanguinis SK1057]
Length = 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTDLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL+ +
Sbjct: 117 IDFHEFDENSLGKIMET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLRAAGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT + ++ R A A A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTIAILGDT-RKTSVSVRLAVA--ADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|429217613|ref|YP_007175603.1| beta-lactamase superfamily metal-dependent hydrolase [Caldisphaera
lagunensis DSM 15908]
gi|429134142|gb|AFZ71154.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Caldisphaera lagunensis DSM 15908]
Length = 300
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 28/220 (12%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+ ITHGH DHI GLP MY+ +R + P I + + ++ E+ +
Sbjct: 61 ILITHGHGDHINGLPGLLQSMYLNTRNI----PLNIIASSDVIKFIKDTLEVEGAHLGFS 116
Query: 174 LNLDLVALDVG-ETYEMRND-IVVRPFKTHHVIPSQGYVI-YLLR-----KKLKKQYIHL 225
+NL + + E + + D I V + H + Y + + LR +++K+Q I +
Sbjct: 117 INLYEINQEGKIEIFNQKGDKINVYWHPSCHSREAYCYTLEWNLRPRINVEEMKRQGI-I 175
Query: 226 KGKQIEKLKKSGVEITDIILSP-EVAFTGDT--TSEFMLNPRNADALRAKILITEATFLD 282
G +EK +S + I L+P +++TGDT + +++D ++I E+TF D
Sbjct: 176 PGPDVEKYIESNDDKMLIRLNPFRISYTGDTKPCDSIIKCIKDSD-----VIIHESTFSD 230
Query: 283 DEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
D + A Q H+ +AK R ++L+H SSRY
Sbjct: 231 DNE--KEADQFFHSTGRRAALDAKNSRASLLILSHISSRY 268
>gi|423368195|ref|ZP_17345627.1| ribonuclease Z [Bacillus cereus VD142]
gi|401081413|gb|EJP89689.1| ribonuclease Z [Bacillus cereus VD142]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 41/232 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVSLLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFCVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPVF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V + D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTVLDGKDFIGPPQKGRVITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
+L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 228 VLVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|150398775|ref|YP_001322542.1| ribonuclease Z [Methanococcus vannielii SB]
gi|166991486|sp|A6UN58.1|RNZ_METVS RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|150011478|gb|ABR53930.1| ribonuclease Z [Methanococcus vannielii SB]
Length = 315
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 124/286 (43%), Gaps = 49/286 (17%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S K P I+ PP
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLLQSIAFQGRKKPLNIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGE------TYEMRNDIVVRPFKTHHVIPSQG 208
KE ++ + +I + +N+ +++ E N+ V F H +PS
Sbjct: 93 TKEMIKNMLKIGYHSIDYPINIHEASIESPEMIIASSNNSNGNNYEVYTFPVKHSVPSIS 152
Query: 209 YVIYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEIT--DIILSPE-- 248
Y L K++KK + +K G ++KLK K+G IT D+ + P+
Sbjct: 153 Y----LFKQIKKPQMDIKKAETLGIEIGPDLKKLKDGFSIQLKNGKVITPKDVTIPPKKG 208
Query: 249 --VAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIEN 304
+ ++GDT EF + +LI EATF D M ++A H+ + + ++
Sbjct: 209 YCIGYSGDTIPIDEF---GKFLKYHGCNVLIHEATF-DSSMQ-KNAVDTMHSTILDALDI 263
Query: 305 AKWIRNKAVLLTHFSSRY-HIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+ + ++ TH S+RY I + ++K + K + + E F
Sbjct: 264 LEKSGARTLIATHISARYDDIMSFERDIVKFKEKNPEIEILIAEDF 309
>gi|417629533|ref|ZP_12279770.1| ribonuclease Z [Escherichia coli STEC_MHI813]
gi|345372280|gb|EGX04244.1| ribonuclease Z [Escherichia coli STEC_MHI813]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|365137317|ref|ZP_09344036.1| ribonuclease Z [Klebsiella sp. 4_1_44FAA]
gi|419972730|ref|ZP_14488157.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419977591|ref|ZP_14492890.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419983293|ref|ZP_14498444.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419989458|ref|ZP_14504434.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|419995497|ref|ZP_14510303.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420001591|ref|ZP_14516246.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420006505|ref|ZP_14521002.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420012325|ref|ZP_14526639.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420018058|ref|ZP_14532256.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420023854|ref|ZP_14537869.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420031221|ref|ZP_14545043.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420037071|ref|ZP_14550727.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420041017|ref|ZP_14554515.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420046778|ref|ZP_14560097.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420052488|ref|ZP_14565669.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420060369|ref|ZP_14573369.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420063948|ref|ZP_14576759.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420069832|ref|ZP_14582486.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420075376|ref|ZP_14587852.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420081137|ref|ZP_14593447.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421909576|ref|ZP_16339386.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421916911|ref|ZP_16346475.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424932481|ref|ZP_18350853.1| Ribonuclease BN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428148081|ref|ZP_18995973.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428943654|ref|ZP_19016513.1| ribonuclease Z [Klebsiella pneumoniae VA360]
gi|363656181|gb|EHL94951.1| ribonuclease Z [Klebsiella sp. 4_1_44FAA]
gi|397350127|gb|EJJ43217.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397353932|gb|EJJ46999.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397355464|gb|EJJ48463.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397367264|gb|EJJ59876.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397369581|gb|EJJ62181.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397371915|gb|EJJ64423.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397382214|gb|EJJ74377.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397386168|gb|EJJ78254.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397390773|gb|EJJ82671.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397400090|gb|EJJ91736.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397400534|gb|EJJ92175.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397405734|gb|EJJ97180.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397418551|gb|EJK09709.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397419335|gb|EJK10484.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397425390|gb|EJK16269.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397433661|gb|EJK24305.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397434507|gb|EJK25142.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397442426|gb|EJK32777.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397448469|gb|EJK38643.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397453442|gb|EJK43502.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|407806668|gb|EKF77919.1| Ribonuclease BN [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410116478|emb|CCM82011.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410120628|emb|CCM89100.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426296308|gb|EKV58967.1| ribonuclease Z [Klebsiella pneumoniae VA360]
gi|427541923|emb|CCM92111.1| Ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 306
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ V + D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|335357164|ref|ZP_08549034.1| ribonuclease Z [Lactobacillus animalis KCTC 3501]
Length = 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 112/257 (43%), Gaps = 53/257 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G R R + + +FITH H DHI GLP +++SR G L+P TI+ P
Sbjct: 36 FDVGEGTQHQILRTTIRPRKVDKIFITHLHGDHIFGLPGFLSSRSFQGGEELRPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVAL-DVGETYEMRNDIVVRPF-KTHHVIPSQGYV 210
I + V ++ ++ ++ L V L D G +E ND F + H I GY
Sbjct: 96 KGIADFVRISLKVSQT--HLSYPLRFVELADEGVIFE--NDKFKVSFCRLDHRIECVGYR 151
Query: 211 I-------YLLRKKLKKQ-------YIHLKGKQIEKLKKS-GVEITDIILSPE----VAF 251
I LL KL+ + Y +K ++ L ++ D I P+ +
Sbjct: 152 IEEKDHPGELLIDKLRAEHVPSGPIYGRIKAGEVVTLPDGRTLDGKDYIGEPQKGRIITI 211
Query: 252 TGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
GDT T + + AD +L+ E+TF E + H S I+ AK I
Sbjct: 212 LGDTRQTPGILELAQGAD-----VLVHESTFGKGEAKLARNYYH-----STCIQAAK-IA 260
Query: 310 NKA----VLLTHFSSRY 322
NKA +LL H S+RY
Sbjct: 261 NKAGVKQLLLNHISARY 277
>gi|170017531|ref|YP_001728450.1| beta-lactamase superfamily hydrolase [Leuconostoc citreum KM20]
gi|414596893|ref|ZP_11446465.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
gi|421877707|ref|ZP_16309248.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|421879667|ref|ZP_16311128.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|254808645|sp|B1MZQ4.1|RNZ_LEUCK RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|169804388|gb|ACA83006.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Leuconostoc citreum KM20]
gi|372556485|emb|CCF25368.1| Ribonuclease Z [Leuconostoc citreum LBAE C10]
gi|390446434|emb|CCF27248.1| Ribonuclease Z [Leuconostoc citreum LBAE C11]
gi|390482257|emb|CCF28526.1| Ribonuclease Z [Leuconostoc citreum LBAE E16]
Length = 322
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 106/247 (42%), Gaps = 32/247 (12%)
Query: 104 FDIGRCPTRAIQQNF--------VFITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + +FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTLRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
+KE V+ + + + L V L G ++ + V+ K H I S G+ +
Sbjct: 96 KGVKEFVQTALRVSET--RLSYPLVFVELTAGVVFDDKTFRVIAA-KMKHRIESWGFRVE 152
Query: 213 -------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPEVAFTGDTTS----EFM 260
LL KL+ + I G +LK V + D + + G F+
Sbjct: 153 EKDHPGELLVNKLRAENIP-SGPIFGQLKAGKRVSLPDGRILDGHDYVGPAQRGRVVTFI 211
Query: 261 LNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLL 315
L+ R D A A +L+ E+T+ E + A+ H H+ NA+ + ++L
Sbjct: 212 LDTRPNDNIELLARHADVLVHESTYGAGEDEAKMARAHAHSTSINAANNARRAQANQLIL 271
Query: 316 THFSSRY 322
TH S+RY
Sbjct: 272 THLSARY 278
>gi|365876751|ref|ZP_09416270.1| ribonuclease Z [Elizabethkingia anophelis Ag1]
gi|442587049|ref|ZP_21005870.1| ribonuclease Z [Elizabethkingia anophelis R26]
gi|365755749|gb|EHM97669.1| ribonuclease Z [Elizabethkingia anophelis Ag1]
gi|442563282|gb|ELR80496.1| ribonuclease Z [Elizabethkingia anophelis R26]
Length = 304
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 35/231 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FI+H H DH GLP +AS R L + ++ P IK+ +E +FEI + ++
Sbjct: 56 NHIFISHLHGDHCFGLPGLIASFRLLGRDQELHVYGPKGIKKMLETIFEITETHRGFQIV 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL----KGKQIE 231
+ D + + + V +H I G YL R+K K + +++ K +IE
Sbjct: 116 YHELEGDQSQKVYEDDKLEVWTIPLYHRIYCNG---YLFREKPKDRRLNMAEISKYPEIE 172
Query: 232 -------KLKKSGVEITDIILSPEV-----------AFTGDTTSEFMLNP--RNADALRA 271
K K V +L EV AF DT + + P N D
Sbjct: 173 ICDYHNLKRGKDFVLSDGYVLKNEVLTTDPEPPVSYAFCSDTRFKEDIIPIIENVD---- 228
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L E+TFL D E A GHT E A+ K ++L HFS+RY
Sbjct: 229 -VLYHESTFLHDLK--EMADYTGHTTAKEAAIIAQRAGVKKLILGHFSNRY 276
>gi|184158791|ref|YP_001847130.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ACICU]
gi|332875160|ref|ZP_08442993.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|384131176|ref|YP_005513788.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|384143909|ref|YP_005526619.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385238206|ref|YP_005799545.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|387123277|ref|YP_006289159.1| beta-lactamase superfamily metal-dependent hydrolase [Acinetobacter
baumannii MDR-TJ]
gi|407933414|ref|YP_006849057.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|416147360|ref|ZP_11601738.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|417569408|ref|ZP_12220266.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|417578400|ref|ZP_12229237.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|417869102|ref|ZP_12514097.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|417874066|ref|ZP_12518925.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|417879371|ref|ZP_12523943.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|417882430|ref|ZP_12526727.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|421203958|ref|ZP_15661089.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|421534622|ref|ZP_15980894.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|421628332|ref|ZP_16069115.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|421686166|ref|ZP_16125921.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|421703957|ref|ZP_16143407.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|421707911|ref|ZP_16147292.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|421794352|ref|ZP_16230453.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|424051704|ref|ZP_17789236.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|424063254|ref|ZP_17800739.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|425753369|ref|ZP_18871253.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|445473903|ref|ZP_21453015.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|445477372|ref|ZP_21454288.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
gi|183210385|gb|ACC57783.1| Metal-dependent hydrolase of the beta-lactamase superfamily III
[Acinetobacter baumannii ACICU]
gi|322507396|gb|ADX02850.1| RNase Z [Acinetobacter baumannii 1656-2]
gi|323518706|gb|ADX93087.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TCDC-AB0715]
gi|332736604|gb|EGJ67598.1| putative ribonuclease Z [Acinetobacter baumannii 6014059]
gi|333365591|gb|EGK47605.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
AB210]
gi|342228829|gb|EGT93706.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH3]
gi|342229820|gb|EGT94670.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH2]
gi|342231509|gb|EGT96318.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH1]
gi|342237791|gb|EGU02244.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
ABNIH4]
gi|347594402|gb|AEP07123.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
MDR-ZJ06]
gi|385877769|gb|AFI94864.1| metal-dependent hydrolase, beta-lactamase superfamily III
[Acinetobacter baumannii MDR-TJ]
gi|395553631|gb|EJG19637.1| putative ribonuclease Z [Acinetobacter baumannii OIFC189]
gi|395569097|gb|EJG29767.1| putative ribonuclease Z [Acinetobacter baumannii Naval-17]
gi|398326499|gb|EJN42646.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC12]
gi|404568768|gb|EKA73863.1| putative ribonuclease Z [Acinetobacter baumannii IS-143]
gi|404665260|gb|EKB33223.1| ribonuclease Z [Acinetobacter baumannii Ab11111]
gi|404674822|gb|EKB42558.1| ribonuclease Z [Acinetobacter baumannii Ab44444]
gi|407191004|gb|EKE62215.1| RNase Z [Acinetobacter baumannii ZWS1219]
gi|407191126|gb|EKE62336.1| RNase Z [Acinetobacter baumannii ZWS1122]
gi|407901995|gb|AFU38826.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii
TYTH-1]
gi|408707439|gb|EKL52723.1| putative ribonuclease Z [Acinetobacter baumannii OIFC180]
gi|409987512|gb|EKO43693.1| beta-lactamase superfamily hydrolase [Acinetobacter baumannii AC30]
gi|410394499|gb|EKP46827.1| putative ribonuclease Z [Acinetobacter baumannii Naval-2]
gi|425497981|gb|EKU64070.1| putative ribonuclease Z [Acinetobacter baumannii Naval-113]
gi|444768615|gb|ELW92826.1| putative ribonuclease Z [Acinetobacter baumannii OIFC338]
gi|444776450|gb|ELX00492.1| putative ribonuclease Z [Acinetobacter baumannii Naval-78]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 28/234 (11%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+ ITH H DH GL +AS G+ P I + P +++++ FEI L ++ L +
Sbjct: 59 ICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFEITAQLTDLHLPYSI 115
Query: 179 VALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL----KGKQ 229
+DV E ++ +++ ++ H +PS + IY+ +KK+ Q + KG
Sbjct: 116 KFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGVPKGDI 175
Query: 230 IEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILITE 277
LK+ VE IL + GD +L D A++LI E
Sbjct: 176 WGHLKRGYDVEFEGRILKSQDFIKIQKQQIHAIIGGDNDRPELLADTCKD---AQLLIHE 232
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
AT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 233 ATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|161986495|ref|YP_311209.2| ribonuclease Z [Shigella sonnei Ss046]
gi|383179242|ref|YP_005457247.1| ribonuclease Z [Shigella sonnei 53G]
gi|414576888|ref|ZP_11434070.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|420364332|ref|ZP_14865215.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|432948143|ref|ZP_20143299.1| ribonuclease Z [Escherichia coli KTE196]
gi|391284641|gb|EIQ43236.1| ribonuclease Z [Shigella sonnei 3233-85]
gi|391293995|gb|EIQ52254.1| ribonuclease Z [Shigella sonnei 4822-66]
gi|431458121|gb|ELH38458.1| ribonuclease Z [Escherichia coli KTE196]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|384181963|ref|YP_005567725.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324328047|gb|ADY23307.1| ribonuclease Z [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 307
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFHVETKRLSHGIECFGYRIIEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRKLAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANVKRLILTHISSRYQ 276
>gi|415844452|ref|ZP_11524194.1| ribonuclease Z [Shigella sonnei 53G]
gi|418266674|ref|ZP_12886155.1| ribonuclease Z [Shigella sonnei str. Moseley]
gi|420359352|ref|ZP_14860326.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|323168564|gb|EFZ54244.1| ribonuclease Z [Shigella sonnei 53G]
gi|391282033|gb|EIQ40670.1| ribonuclease Z [Shigella sonnei 3226-85]
gi|397899499|gb|EJL15873.1| ribonuclease Z [Shigella sonnei str. Moseley]
Length = 294
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 163
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 164 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 217
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 218 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 275
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 276 CRS-----IFPATE 284
>gi|417231974|ref|ZP_12033372.1| ribonuclease BN [Escherichia coli 5.0959]
gi|386204973|gb|EII09484.1| ribonuclease BN [Escherichia coli 5.0959]
Length = 311
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 VFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|422834569|ref|ZP_16882630.1| ribonuclease Z [Escherichia coli E101]
gi|371601361|gb|EHN90111.1| ribonuclease Z [Escherichia coli E101]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPYDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|333987916|ref|YP_004520523.1| Ribonuclease Z [Methanobacterium sp. SWAN-1]
gi|333826060|gb|AEG18722.1| Ribonuclease Z [Methanobacterium sp. SWAN-1]
Length = 342
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 118/288 (40%), Gaps = 80/288 (27%)
Query: 104 FDIGRCPTRAIQQ--------NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPS 154
FD G R + + + +FITH H DH G+P V S K P IF P
Sbjct: 33 FDCGEGTQRQMSRARLSPMKVDKIFITHFHGDHFLGVPGMVQSMAFRGRKEPLHIFGPEG 92
Query: 155 IKEDVEKL---------FEI-----------------HRSLGN--------VELNLDLVA 180
+ + VEK+ FEI RS+ + ELN +
Sbjct: 93 LSKIVEKIKGLGYFSMSFEICVHEIPDGTPEGYDGSVDRSIEDDRSIKADETELN-EKEG 151
Query: 181 LDVGETYEMR----NDIVVRPFKTHHVIPSQGYVIYLLR--KKLKKQYIHLK---GKQIE 231
L+ G +E++ D +V K H +P+ Y I R K +K++ + L G
Sbjct: 152 LNEGLFHEIKILEEEDYIVTCCKVEHSVPNLAYCITEKRAPKFIKEKALKLGVKPGPDFG 211
Query: 232 KLKKS-GVEITDIILSP-----------EVAFTGDTTSEFMLNPRNAD-----ALRAKIL 274
KL++ V++ + I+ P ++ ++GDT R D A A +L
Sbjct: 212 KLQQGIPVKVGNRIIKPHEVLGSERQGRKIVYSGDT--------RPCDQMIKFAEDATVL 263
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
I E+TF D + A + GH+ ++ E A K +++TH S+RY
Sbjct: 264 IHESTF--DSQNENKAYETGHSTAAKAAEIANKANVKKLIVTHISTRY 309
>gi|41614860|ref|NP_963358.1| hypothetical protein NEQ064 [Nanoarchaeum equitans Kin4-M]
gi|56749442|sp|Q74MH2.1|RNZ_NANEQ RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|40068584|gb|AAR38919.1| NEQ064 [Nanoarchaeum equitans Kin4-M]
Length = 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 42/249 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLP--MYVASRGLYNLKPPTIFVPP 153
FD G R + Q +++F+TH H DHI GLP + S YN + TIF P
Sbjct: 32 FDAGENTQRQMRLLNLSPTQIDYIFLTHIHGDHILGLPGILLSLSNQDYN-RELTIFGPK 90
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV--- 210
IKE +EK+ + + +N L ++GET + H +P Y
Sbjct: 91 GIKEVIEKIIDSFA----ININFPLKIKEIGETKIDFGPFYIESIYGIHQVPVLAYSFKE 146
Query: 211 ---IYLLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE--------VAFTGDTTS- 257
I + ++KL K I K + KLK+ V I I L P+ + FT T +
Sbjct: 147 KDKIKINKEKLAKYNIRSNPK-LAKLKEGKSVTINGITLDPKEFTYIQKGLKFTLITDTL 205
Query: 258 ---EFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+F+ R++D I+ E FLD + + A +H H+ +S+ +K ++
Sbjct: 206 FREQFIDFARDSD-----IIFHELAFLDKDK--DKAIEHYHSTISDAFRIRDESNSKLLV 258
Query: 315 LTHFSSRYH 323
H S RY
Sbjct: 259 FIHVSPRYQ 267
>gi|300958961|ref|ZP_07171063.1| ribonuclease Z [Escherichia coli MS 175-1]
gi|300314413|gb|EFJ64197.1| ribonuclease Z [Escherichia coli MS 175-1]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHRDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|256850990|ref|ZP_05556379.1| ribonuclease Z [Lactobacillus jensenii 27-2-CHN]
gi|260661202|ref|ZP_05862116.1| ribonuclease Z [Lactobacillus jensenii 115-3-CHN]
gi|297205873|ref|ZP_06923268.1| ribonuclease Z [Lactobacillus jensenii JV-V16]
gi|256616052|gb|EEU21240.1| ribonuclease Z [Lactobacillus jensenii 27-2-CHN]
gi|260548139|gb|EEX24115.1| ribonuclease Z [Lactobacillus jensenii 115-3-CHN]
gi|297148999|gb|EFH29297.1| ribonuclease Z [Lactobacillus jensenii JV-V16]
Length = 309
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 105/248 (42%), Gaps = 37/248 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRPRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
+++ V I ++ V + V L + + V K H + S G+ +
Sbjct: 96 LEQFVTTALRISKT--KVSYPIHFVELKDDQKIFENAEFSVYCKKLDHRVASFGFRVVEK 153
Query: 212 ----YLLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT 255
LL KL ++ LK ++ +L+ V L PE V DT
Sbjct: 154 SHPGVLLMDKLAPYHLPNGPILGQLKAGKVVELEDGRVLNGKDFLGPEKKGRIVTIIYDT 213
Query: 256 TSEFMLNPRNAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+ P A+ A A +L+ E+TF E + A+ + H+ ++ E AK K +
Sbjct: 214 R----ITPSIAELAQDADVLVHESTFAGPEGKM--AKAYYHSTATQAAEIAKKANVKRLF 267
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 268 LTHVSARY 275
>gi|375135382|ref|YP_004996032.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
gi|325122827|gb|ADY82350.1| ribonuclease Z [Acinetobacter calcoaceticus PHEA-2]
Length = 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 32/240 (13%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ F+I L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARTKPLIVIAP---KEIQQWFKITAQLTDLH 110
Query: 174 LNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQYIHL--- 225
L + +DV E ++ +++ ++ H +PS + IY+ +KK+ Q +
Sbjct: 111 LPYSIKFIDVNEATRPQQLTDELFIQAHPLSHRVPSFAFSIYIKSTQKKIDIQALTQLGV 170
Query: 226 -KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-A 271
KG LK+ VE IL + GD +L ADA + A
Sbjct: 171 PKGDIWGHLKRGYDVEFEGRILKSQDFIKIQNQQIHAIIGGDNDRPELL----ADACKNA 226
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
++LI EAT+L + + + H+ + E A+ ++LTHFS R+ + +QA+
Sbjct: 227 QLLIHEATYLQTVLD-KVGKGPMHSSAKMVAEFAEQQSLDNLILTHFSPRHQDKTGQQAI 285
>gi|417672982|ref|ZP_12322440.1| ribonuclease Z [Shigella dysenteriae 155-74]
gi|417690398|ref|ZP_12339620.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332088400|gb|EGI93518.1| ribonuclease Z [Shigella boydii 5216-82]
gi|332090756|gb|EGI95849.1| ribonuclease Z [Shigella dysenteriae 155-74]
Length = 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPSDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|291535714|emb|CBL08826.1| RNAse Z [Roseburia intestinalis M50/1]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + S G P + P + +E++ R + EL
Sbjct: 55 DVICFTHYHADHISGLPGLLLSMGNAERTEPLTMIGP---KGLERVVGALRMIAP-ELPF 110
Query: 177 DLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-----------KKLKKQY 222
++ +++ E E+ N + F+ +H I GY + + R +++ ++Y
Sbjct: 111 EIRYIEIMEPEADIEI-NGYHIHAFRVNHNITCYGYTVEIRRAGRFSVEHAKEREIPQKY 169
Query: 223 IHL--KGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAK 272
+ KG++IE + G T D++L +V + DT T + + +N+D
Sbjct: 170 WNRLQKGEEIE--TEDGAHYTPDMVLGAARKGIKVTYCTDTRPTESLVASAKNSD----- 222
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS-SRYHIED 326
+LI E + + E I A+Q+ H E E AK + LTHFS S H ED
Sbjct: 223 LLICEGMYAEKE-KIAKAKQYKHMTFYEAAEVAKKAEVAEMWLTHFSPSLVHAED 276
>gi|418041824|ref|ZP_12680038.1| ribonuclease Z [Escherichia coli W26]
gi|383475227|gb|EID67192.1| ribonuclease Z [Escherichia coli W26]
Length = 270
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 25 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 82
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 83 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 139
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 140 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 193
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 194 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 251
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 252 CRS-----IFPATE 260
>gi|373107688|ref|ZP_09521981.1| ribonuclease Z [Stomatobaculum longum]
gi|371650646|gb|EHO16099.1| ribonuclease Z [Stomatobaculum longum]
Length = 304
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 37/258 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G P + + P + +E++ RS+ EL
Sbjct: 55 DVICFTHYHADHISGLPGLLLTMGNAERTEPLLMIGP---KGLERVVTALRSIAP-ELPF 110
Query: 177 DLVALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYIHL--- 225
+V ++ E E R V+ ++ +H + GY I + R + K+Q I L
Sbjct: 111 PIVFSELTEAREQRTAGPYVIDAYRVNHNVLCYGYCISIPRIGRFDAARAKEQGIPLKFW 170
Query: 226 ----KGKQIEKLKKSGVEITDIILSP-----EVAFTGDTTSEFMLNPRNADALRAKILIT 276
KG+ I K V D++L +V++ DT + AD A ++I
Sbjct: 171 NPLQKGQTITDGDK--VYTPDMVLGGARRGLKVSYCTDTRPVPAIAEYAAD---ADLMIC 225
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336
E + + + + A++H H + E + A + K + LTH+S + + A ++
Sbjct: 226 EGMYGEADKQ-QKAREHKHMTMQEAAKLASEAKPKELWLTHYSPSLNYPEEYMAEIR--- 281
Query: 337 KVSAKVVPLTEGFKSVYT 354
K+ P + K +T
Sbjct: 282 ----KIFPAAKAAKDGWT 295
>gi|387607959|ref|YP_006096815.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|432392786|ref|ZP_19635616.1| ribonuclease Z [Escherichia coli KTE21]
gi|432771234|ref|ZP_20005573.1| ribonuclease Z [Escherichia coli KTE50]
gi|432962440|ref|ZP_20152093.1| ribonuclease Z [Escherichia coli KTE202]
gi|433063733|ref|ZP_20250655.1| ribonuclease Z [Escherichia coli KTE125]
gi|284922259|emb|CBG35344.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli 042]
gi|430917942|gb|ELC38981.1| ribonuclease Z [Escherichia coli KTE21]
gi|431314931|gb|ELG02863.1| ribonuclease Z [Escherichia coli KTE50]
gi|431474231|gb|ELH54053.1| ribonuclease Z [Escherichia coli KTE202]
gi|431581387|gb|ELI53838.1| ribonuclease Z [Escherichia coli KTE125]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE + +R V + H + GY I K L Q + G +
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|432793487|ref|ZP_20027571.1| ribonuclease Z [Escherichia coli KTE78]
gi|432799445|ref|ZP_20033467.1| ribonuclease Z [Escherichia coli KTE79]
gi|431339150|gb|ELG26212.1| ribonuclease Z [Escherichia coli KTE78]
gi|431343311|gb|ELG30275.1| ribonuclease Z [Escherichia coli KTE79]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEIFDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTIILEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKSCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|405756130|ref|YP_006679594.1| ribonuclease Z [Listeria monocytogenes SLCC2540]
gi|404225330|emb|CBY76692.1| ribonuclease Z [Listeria monocytogenes SLCC2540]
Length = 310
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASR----GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
+FITH H DHI GLP ++SR G NL TI+ P I E VE + + ++
Sbjct: 63 IFITHMHGDHIFGLPGLLSSRSFQGGDSNL---TIYGPAGIAEYVETSLRLSGTRLTYKI 119
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKG 227
N + + + EM +V H + S GY I L +KLK + G
Sbjct: 120 NFEEIEPGLIFEDEM---FLVTADDLDHGVRSFGYRIVEKDKQGALNAEKLKVDGVE-AG 175
Query: 228 KQIEKLKKSG---------VEITDIILSPE----VAFTGD---TTSEFMLNPRNADALRA 271
+KLK ++ + I P+ ++ GD T +E L AL A
Sbjct: 176 PVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANELEL------ALNA 229
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
IL+ EATF D+ + A ++ H+ + + AK K ++LTH SSRY
Sbjct: 230 DILVHEATFEGDKAKM--AGEYMHSTTLQAAKLAKTANVKKLILTHISSRY 278
>gi|425082509|ref|ZP_18485606.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|428937369|ref|ZP_19010661.1| ribonuclease Z [Klebsiella pneumoniae JHCK1]
gi|405600761|gb|EKB73926.1| ribonuclease Z [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|426296407|gb|EKV59048.1| ribonuclease Z [Klebsiella pneumoniae JHCK1]
Length = 306
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 93/229 (40%), Gaps = 28/229 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL------KGKQ 229
L ++ + G ++ V + H + GY I K L G
Sbjct: 116 LTIIEVGPGLVFD-EEGYRVTAYPLSHPVECYGYRIAQHDKPGTLDAAQLIADGVPPGPL 174
Query: 230 IEKLKKSG-VEITD--II-----LSPE-----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+LK+ V + D +I L P +A GDT P+ + R ++
Sbjct: 175 FHQLKRGQRVTLADGRVIDGSRYLGPATPGKTLAIFGDTAP----CPQALEMARGADVMV 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIE 325
T L+ M+ E A GH+ + AK ++ THFSSRY E
Sbjct: 231 HETTLEQAMA-EKANSRGHSSSQQTAALAKEAGVGTLIATHFSSRYDAE 278
>gi|406658165|ref|ZP_11066305.1| ribonuclease Z [Streptococcus iniae 9117]
gi|405578380|gb|EKB52494.1| ribonuclease Z [Streptococcus iniae 9117]
Length = 309
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 37/257 (14%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP ++ASR + T I+ P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIKKIFITHLHGDHIFGLPGFLASRSFQASEEQTDIDIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
+K VE ++ S +++ + + D +G+ E + V K H I GY I
Sbjct: 96 VGVKRFVETSLQVSGSRLPYKVHFNELREDALGKILET-DKFEVYAEKLAHTIFCIGYRI 154
Query: 212 YL--LRKKLKKQYIHLKGKQIEKL---KKSGVEIT----------DIILSPE----VAFT 252
L L + + G L K+G ++T D I P+ +
Sbjct: 155 VQKDLEGTLDAEALKAAGVPFGPLFGKVKNGQDVTLDDGTVIKAADYISQPKKGKIITIL 214
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
GDT + + R A+ A +L+ E+T+ + + A+ HGH + + AK K
Sbjct: 215 GDTRKS-LASQRLAE--NADVLVHESTYGKGDERL--AKNHGHATNMQAAQIAKEASVKL 269
Query: 313 VLLTHFSSRYHIEDIRQ 329
+LL H S+R+ D RQ
Sbjct: 270 LLLNHVSARFLGRDCRQ 286
>gi|227893473|ref|ZP_04011278.1| ribonuclease Z [Lactobacillus ultunensis DSM 16047]
gi|227864698|gb|EEJ72119.1| ribonuclease Z [Lactobacillus ultunensis DSM 16047]
Length = 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 101/255 (39%), Gaps = 51/255 (20%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-- 212
I++ V+ ++ R+ V + V L V + H IPS G+ I
Sbjct: 96 IEQFVKTSLKVSRT--KVSYPIKFVELSKPGLICQDKSFRVYTDRLDHRIPSFGFRIVED 153
Query: 213 -----LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTG-------------- 253
LL KL K Y G + KLK+ I+LS G
Sbjct: 154 SHPGELLIDKLAK-YNVPNGPLLGKLKQG----QQIVLSDGTVLNGKDFLGPEKPGRIVT 208
Query: 254 ---DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
DT S + D A +L+ E+TF DE + H H S ++ A+ R
Sbjct: 209 IIYDTRSTPSIARLAKD---ADVLVHESTFAGDEAKMAHNYYH-----STSVQAAQIARQ 260
Query: 311 ---KAVLLTHFSSRY 322
K + L H S+RY
Sbjct: 261 ENVKKLCLNHISARY 275
>gi|418944298|ref|ZP_13497379.1| ribonuclease Z, partial [Escherichia coli O157:H43 str. T22]
gi|375320401|gb|EHS66365.1| ribonuclease Z, partial [Escherichia coli O157:H43 str. T22]
Length = 304
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|357413526|ref|YP_004925262.1| ribonuclease Z [Streptomyces flavogriseus ATCC 33331]
gi|320010895|gb|ADW05745.1| ribonuclease Z [Streptomyces flavogriseus ATCC 33331]
Length = 302
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + +TH H DH GL + L + P T P S + ++L +VEL
Sbjct: 57 NRICVTHFHGDHALGLAGVIQRINLDQVPHPVTAHFPASGQHFFDRLRYATAYRESVELT 116
Query: 176 LDLVALD----VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
VA D + Y + + P +++ ++ + +L KL + I G +
Sbjct: 117 EAPVAADGVLATTDAYTLDGHRLSHPVESYGYRLTEPDRLRMLPAKLAEHGI--AGPDVG 174
Query: 232 KLKKSGV-------EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDE 284
++++ GV E+++ AF DT + + A A + +L+ E+TFLD++
Sbjct: 175 RIQRDGVLRGVPLAEVSETRRGQRFAFVMDTR---LCDGAFALAEKCDMLVIESTFLDED 231
Query: 285 MSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI--RQA 330
+ A HGH + AK + ++LTHFS RY D RQA
Sbjct: 232 GRL--ADDHGHLTAGQAARVAKESGVRHLVLTHFSQRYTDPDAFERQA 277
>gi|417613744|ref|ZP_12264202.1| ribonuclease Z [Escherichia coli STEC_EH250]
gi|345361938|gb|EGW94095.1| ribonuclease Z [Escherichia coli STEC_EH250]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDGKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|432370511|ref|ZP_19613597.1| ribonuclease Z [Escherichia coli KTE10]
gi|430884723|gb|ELC07658.1| ribonuclease Z [Escherichia coli KTE10]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPSPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|403744689|ref|ZP_10953840.1| ribonuclease Z [Alicyclobacillus hesperidum URH17-3-68]
gi|403121867|gb|EJY56126.1| ribonuclease Z [Alicyclobacillus hesperidum URH17-3-68]
Length = 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 42/234 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFE-----IHRSLG 170
N +FITH H DHI GLP + SR P +I P ++ +E + +
Sbjct: 57 NRIFITHLHGDHIYGLPGMLGSRSFQAGSGPLSILGPYGLRTFLETAIATSGAHLSYAWD 116
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIH 224
EL +L ++ V YE + RP + H IPS GY I LRK L +
Sbjct: 117 VTELGNELQSVVVDGDYE----VTWRPLR--HGIPSYGYRIQERPFPGALRKDLLEAAGL 170
Query: 225 LKGKQIEKLKKSGVEIT----------DIILSPE----VAFTGDT--TSEFMLNPRNADA 268
G ++ KSG ++T + I PE V GDT E + +NAD
Sbjct: 171 PPGPLYREI-KSGQDVTLPNGHIIVAKNFIDPPEPGRIVTILGDTRPCDEAVTLAQNAD- 228
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
I++ EAT+ + + A +H H+ +E E A+ + ++LTH SSRY
Sbjct: 229 ----IIVHEATYTAADADL--AARHQHSTAAEAAEIARAAGARKLVLTHVSSRY 276
>gi|432862866|ref|ZP_20087155.1| ribonuclease Z [Escherichia coli KTE146]
gi|431404905|gb|ELG88151.1| ribonuclease Z [Escherichia coli KTE146]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWADYP--LE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|241888625|ref|ZP_04775932.1| ribonuclease Z [Gemella haemolysans ATCC 10379]
gi|241864648|gb|EER69023.1| ribonuclease Z [Gemella haemolysans ATCC 10379]
Length = 306
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 110 PTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY---NLKPPTIFVPPSIKEDVEK-LFEI 165
PT+ + +FI+H H DH+ GL +++SR N TI+ P IK+ +EK +
Sbjct: 53 PTKITK---IFISHLHADHVLGLIGFLSSRSFLLDTNASKVTIYGPVGIKDFIEKNMMFT 109
Query: 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225
H SL +++ + + + + V + H + GY I KKQ L
Sbjct: 110 HCSLS---YSVEYIEISSEQCIIDNKTVTVFSYPLAHNVECFGYKII-----FKKQKGSL 161
Query: 226 KGKQIEKLK-KSGVEITDIILSPEVAFTGD--TTSEFMLNPR-----------------N 265
++ +L G +I S F G +SEF+ + N
Sbjct: 162 DADKLRELGIMPGPFYREIKESDTFEFNGKVYNSSEFLSEDKPGKEISIIPDTRYFEGLN 221
Query: 266 ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEI---IENAKWIRNKAVLLTHFSSRY 322
+ I+ITE T+L E HA+++ H + ++ IEN+K + N + LTH S+RY
Sbjct: 222 EFVKNSNIIITECTYLLKE-DAHHARKNYHLSILDVEKMIENSK-VEN--LFLTHISARY 277
Query: 323 HIEDIRQAVLKLQSKVSAKV 342
+ V L K S K+
Sbjct: 278 DRNIEKDVVESLCDKCSVKI 297
>gi|194433318|ref|ZP_03065598.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|416286493|ref|ZP_11648392.1| Ribonuclease Z [Shigella boydii ATCC 9905]
gi|194418412|gb|EDX34501.1| ribonuclease Z [Shigella dysenteriae 1012]
gi|320178758|gb|EFW53721.1| Ribonuclease Z [Shigella boydii ATCC 9905]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPSDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|257414083|ref|ZP_05591894.1| ribonuclease Z [Roseburia intestinalis L1-82]
gi|257201312|gb|EEU99596.1| ribonuclease Z [Roseburia intestinalis L1-82]
Length = 319
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + S G P + P + +E++ R + EL
Sbjct: 68 DVICFTHYHADHISGLPGLLLSMGNAERTEPLTMIGP---KGLERVVGALRMIAP-ELPF 123
Query: 177 DLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVIYLLR-----------KKLKKQY 222
++ +++ E E+ N + F+ +H I GY + + R +++ ++Y
Sbjct: 124 EIRYIEIMEPEADIEI-NGYHIHAFRVNHNITCYGYTVEIRRAGRFSVEHAKEREIPQKY 182
Query: 223 IHL--KGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAK 272
+ KG++IE + G T D++L +V + DT T + + +N+D
Sbjct: 183 WNRLQKGEEIE--TEDGAHYTPDMVLGAARKGIKVTYCTDTRPTESLVASAKNSD----- 235
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS-SRYHIED 326
+LI E + + E I A+Q+ H E E AK + LTHFS S H ED
Sbjct: 236 LLICEGMYAEKE-KIAKAKQYKHMTFYEAAEVAKKAEVAEMWLTHFSPSLVHAED 289
>gi|328957585|ref|YP_004374971.1| ribonuclease Z [Carnobacterium sp. 17-4]
gi|328673909|gb|AEB29955.1| ribonuclease Z [Carnobacterium sp. 17-4]
Length = 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 112/252 (44%), Gaps = 38/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP +++SR P TI+ P IK V+ + ++ L+
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQGGDGPLTIYGPVGIKNYVQVCLKTSGTVLKYPLHFH 118
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYI-----H 224
+ ++ G +E R ++ R K H I S GY I L K+K+ I +
Sbjct: 119 EI-IEEGVIFEDRYFKVICRKLK--HGIQSFGYRIEEADHQGMLQADKVKEAGIPFGPLY 175
Query: 225 LKGKQIEKLK-KSGVEIT--DIILSPE----VAFTGDT--TSEFMLNPRNADALRAKILI 275
K KQ E + K G D I + V GDT T +L N A IL+
Sbjct: 176 GKLKQGETITLKDGRTFNGKDFIGETQKGRIVTILGDTKKTKNNVLLAEN-----ASILV 230
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
E+TF D + + A+ + H+ + E AK ++LTH S+RY D+ L
Sbjct: 231 HESTF--DGANRKMARDYNHSTNLDAAEVAKEANVAKLVLTHISARYLGRDVY-----LL 283
Query: 336 SKVSAKVVPLTE 347
K + KV P T+
Sbjct: 284 EKEARKVFPNTQ 295
>gi|409096056|ref|ZP_11216080.1| ribonuclease Z [Thermococcus zilligii AN1]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+N K P I+ P E V+ + G D
Sbjct: 57 IFITHFHGDHYLGLGGLLQTMNLWNRKKPLHIYGPEHTFEFVQNFI----NSGFFGPAFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GE + +R F+ H IP+ GYV L +KL K Y G +
Sbjct: 113 IYVHELGEARLKFDGYEIRSFRVKHGIPALGYVFKEEDRRGKFLPEKL-KVYGLEPGPLL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E+ ++ E + +TGDT P AL +A +LI
Sbjct: 172 GKLEREGQIELNGRVIRLEDVTGPRRRGVKLVYTGDTA------PCKRVALFSEKADLLI 225
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+AT+L + E + H+ + E + AK + K + L H + RY
Sbjct: 226 HDATYL----TPEDRGESYHSTVEEACDVAKRAKVKLLALFHRAFRY 268
>gi|90111412|ref|NP_416771.4| RNase BN, tRNA processing enzyme [Escherichia coli str. K-12
substr. MG1655]
gi|157161755|ref|YP_001459073.1| ribonuclease Z [Escherichia coli HS]
gi|161486461|ref|NP_837870.2| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|161984902|ref|YP_408697.2| ribonuclease Z [Shigella boydii Sb227]
gi|170019417|ref|YP_001724371.1| ribonuclease Z [Escherichia coli ATCC 8739]
gi|188494414|ref|ZP_03001684.1| putative ribonuclease BN [Escherichia coli 53638]
gi|209919719|ref|YP_002293803.1| ribonuclease Z [Escherichia coli SE11]
gi|238901443|ref|YP_002927239.1| ribonuclease Z [Escherichia coli BW2952]
gi|251785630|ref|YP_002999934.1| RNase BN [Escherichia coli BL21(DE3)]
gi|253772807|ref|YP_003035638.1| ribonuclease Z [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162280|ref|YP_003045388.1| ribonuclease Z [Escherichia coli B str. REL606]
gi|254289041|ref|YP_003054789.1| ribonuclease Z [Escherichia coli BL21(DE3)]
gi|260844861|ref|YP_003222639.1| binuclear zinc phosphodiesterase [Escherichia coli O103:H2 str.
12009]
gi|260856315|ref|YP_003230206.1| ribonuclease Z [Escherichia coli O26:H11 str. 11368]
gi|260868994|ref|YP_003235396.1| binuclear zinc phosphodiesterase [Escherichia coli O111:H- str.
11128]
gi|300822141|ref|ZP_07102283.1| ribonuclease Z [Escherichia coli MS 119-7]
gi|300903652|ref|ZP_07121570.1| ribonuclease Z [Escherichia coli MS 84-1]
gi|300918567|ref|ZP_07135156.1| ribonuclease Z [Escherichia coli MS 115-1]
gi|300948974|ref|ZP_07163033.1| ribonuclease Z [Escherichia coli MS 116-1]
gi|301303272|ref|ZP_07209397.1| ribonuclease Z [Escherichia coli MS 124-1]
gi|301647638|ref|ZP_07247432.1| ribonuclease Z [Escherichia coli MS 146-1]
gi|309793147|ref|ZP_07687575.1| ribonuclease Z [Escherichia coli MS 145-7]
gi|331668970|ref|ZP_08369818.1| ribonuclease Z [Escherichia coli TA271]
gi|386281337|ref|ZP_10058999.1| ribonuclease Z [Escherichia sp. 4_1_40B]
gi|386705529|ref|YP_006169376.1| ribonuclease Z [Escherichia coli P12b]
gi|387612843|ref|YP_006115959.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli ETEC H10407]
gi|387621979|ref|YP_006129606.1| ribonuclease Z [Escherichia coli DH1]
gi|388478316|ref|YP_490508.1| binuclear zinc phosphodiesterase [Escherichia coli str. K-12
substr. W3110]
gi|404375621|ref|ZP_10980805.1| ribonuclease Z [Escherichia sp. 1_1_43]
gi|415778332|ref|ZP_11489378.1| ribonuclease Z [Escherichia coli 3431]
gi|415784118|ref|ZP_11492081.1| ribonuclease Z [Escherichia coli EPECa14]
gi|415822850|ref|ZP_11511369.1| ribonuclease Z [Escherichia coli OK1180]
gi|415828991|ref|ZP_11515423.1| ribonuclease Z [Escherichia coli OK1357]
gi|415853442|ref|ZP_11529418.1| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|415863998|ref|ZP_11537149.1| ribonuclease Z [Escherichia coli MS 85-1]
gi|417592562|ref|ZP_12243259.1| ribonuclease Z [Escherichia coli 2534-86]
gi|417597583|ref|ZP_12248224.1| ribonuclease Z [Escherichia coli 3030-1]
gi|417602877|ref|ZP_12253447.1| ribonuclease Z [Escherichia coli STEC_94C]
gi|417635205|ref|ZP_12285418.1| ribonuclease Z [Escherichia coli STEC_S1191]
gi|417682949|ref|ZP_12332302.1| ribonuclease Z [Shigella boydii 3594-74]
gi|417703007|ref|ZP_12352118.1| ribonuclease Z [Shigella flexneri K-218]
gi|417723957|ref|ZP_12372761.1| ribonuclease Z [Shigella flexneri K-304]
gi|417739107|ref|ZP_12387687.1| ribonuclease Z [Shigella flexneri 4343-70]
gi|417945289|ref|ZP_12588524.1| ribonuclease Z [Escherichia coli XH140A]
gi|417975419|ref|ZP_12616218.1| ribonuclease Z [Escherichia coli XH001]
gi|418257257|ref|ZP_12880925.1| ribonuclease Z [Shigella flexneri 6603-63]
gi|418303664|ref|ZP_12915458.1| ribonuclease Z [Escherichia coli UMNF18]
gi|419143211|ref|ZP_13687949.1| ribonuclease Z [Escherichia coli DEC6A]
gi|419149298|ref|ZP_13693951.1| ribonuclease Z [Escherichia coli DEC6B]
gi|419159953|ref|ZP_13704458.1| ribonuclease Z [Escherichia coli DEC6D]
gi|419165077|ref|ZP_13709534.1| ribonuclease Z [Escherichia coli DEC6E]
gi|419170947|ref|ZP_13714833.1| ribonuclease Z [Escherichia coli DEC7A]
gi|419181587|ref|ZP_13725200.1| ribonuclease Z [Escherichia coli DEC7C]
gi|419187027|ref|ZP_13730541.1| ribonuclease Z [Escherichia coli DEC7D]
gi|419192320|ref|ZP_13735773.1| ribonuclease Z [Escherichia coli DEC7E]
gi|419204243|ref|ZP_13747425.1| ribonuclease Z [Escherichia coli DEC8B]
gi|419210479|ref|ZP_13753556.1| ribonuclease Z [Escherichia coli DEC8C]
gi|419216350|ref|ZP_13759350.1| ribonuclease Z [Escherichia coli DEC8D]
gi|419227522|ref|ZP_13770378.1| ribonuclease Z [Escherichia coli DEC9A]
gi|419233242|ref|ZP_13776018.1| ribonuclease Z [Escherichia coli DEC9B]
gi|419244041|ref|ZP_13786679.1| ribonuclease Z [Escherichia coli DEC9D]
gi|419249865|ref|ZP_13792448.1| ribonuclease Z [Escherichia coli DEC9E]
gi|419267992|ref|ZP_13810344.1| ribonuclease Z [Escherichia coli DEC10C]
gi|419278774|ref|ZP_13821021.1| ribonuclease Z [Escherichia coli DEC10E]
gi|419284956|ref|ZP_13827129.1| ribonuclease Z [Escherichia coli DEC10F]
gi|419290209|ref|ZP_13832301.1| ribonuclease Z [Escherichia coli DEC11A]
gi|419295536|ref|ZP_13837582.1| ribonuclease Z [Escherichia coli DEC11B]
gi|419307130|ref|ZP_13849029.1| ribonuclease Z [Escherichia coli DEC11D]
gi|419317546|ref|ZP_13859349.1| ribonuclease Z [Escherichia coli DEC12A]
gi|419329687|ref|ZP_13871291.1| ribonuclease Z [Escherichia coli DEC12C]
gi|419335250|ref|ZP_13876783.1| ribonuclease Z [Escherichia coli DEC12D]
gi|419340716|ref|ZP_13882180.1| ribonuclease Z [Escherichia coli DEC12E]
gi|419345938|ref|ZP_13887312.1| ribonuclease Z [Escherichia coli DEC13A]
gi|419350351|ref|ZP_13891689.1| ribonuclease Z [Escherichia coli DEC13B]
gi|419355819|ref|ZP_13897076.1| ribonuclease Z [Escherichia coli DEC13C]
gi|419360914|ref|ZP_13902131.1| ribonuclease Z [Escherichia coli DEC13D]
gi|419366040|ref|ZP_13907201.1| ribonuclease Z [Escherichia coli DEC13E]
gi|419370769|ref|ZP_13911888.1| ribonuclease Z [Escherichia coli DEC14A]
gi|419376205|ref|ZP_13917229.1| ribonuclease Z [Escherichia coli DEC14B]
gi|419381539|ref|ZP_13922490.1| ribonuclease Z [Escherichia coli DEC14C]
gi|419386844|ref|ZP_13927722.1| ribonuclease Z [Escherichia coli DEC14D]
gi|419392359|ref|ZP_13933171.1| ribonuclease Z [Escherichia coli DEC15A]
gi|419402739|ref|ZP_13943463.1| ribonuclease Z [Escherichia coli DEC15C]
gi|419407858|ref|ZP_13948547.1| ribonuclease Z [Escherichia coli DEC15D]
gi|419413444|ref|ZP_13954096.1| ribonuclease Z [Escherichia coli DEC15E]
gi|419810000|ref|ZP_14334883.1| ribonuclease Z [Escherichia coli O32:H37 str. P4]
gi|419863601|ref|ZP_14386118.1| ribonuclease Z [Escherichia coli O103:H25 str. CVM9340]
gi|419870632|ref|ZP_14392725.1| ribonuclease Z [Escherichia coli O103:H2 str. CVM9450]
gi|419876131|ref|ZP_14397901.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9534]
gi|419880859|ref|ZP_14402224.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9545]
gi|419894851|ref|ZP_14414735.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9574]
gi|419901318|ref|ZP_14420677.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9942]
gi|419908988|ref|ZP_14427623.1| hypothetical protein ECO10026_09317 [Escherichia coli O26:H11 str.
CVM10026]
gi|420091011|ref|ZP_14602769.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9602]
gi|420093639|ref|ZP_14605285.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9634]
gi|420102161|ref|ZP_14613186.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9455]
gi|420108430|ref|ZP_14618685.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9553]
gi|420116749|ref|ZP_14626126.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10021]
gi|420120153|ref|ZP_14629374.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10030]
gi|420125061|ref|ZP_14633896.1| ribonuclease BN [Escherichia coli O26:H11 str. CVM10224]
gi|420133674|ref|ZP_14641877.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9952]
gi|420326423|ref|ZP_14828174.1| ribonuclease Z [Shigella flexneri CCH060]
gi|420353648|ref|ZP_14854758.1| ribonuclease Z [Shigella boydii 4444-74]
gi|420381117|ref|ZP_14880570.1| ribonuclease Z [Shigella dysenteriae 225-75]
gi|420391997|ref|ZP_14891250.1| ribonuclease Z [Escherichia coli EPEC C342-62]
gi|422351027|ref|ZP_16431873.1| ribonuclease Z [Escherichia coli MS 117-3]
gi|422819554|ref|ZP_16867765.1| ribonuclease Z [Escherichia coli M919]
gi|423704347|ref|ZP_17678772.1| ribonuclease Z [Escherichia coli H730]
gi|424753070|ref|ZP_18181035.1| ribonuclease BN [Escherichia coli O26:H11 str. CFSAN001629]
gi|424761950|ref|ZP_18189479.1| ribonuclease BN [Escherichia coli O111:H11 str. CFSAN001630]
gi|424774396|ref|ZP_18201411.1| ribonuclease BN [Escherichia coli O111:H8 str. CFSAN001632]
gi|425115685|ref|ZP_18517486.1| ribonuclease Z [Escherichia coli 8.0566]
gi|425120409|ref|ZP_18522108.1| ribonuclease Z [Escherichia coli 8.0569]
gi|425273436|ref|ZP_18664848.1| ribonuclease Z [Escherichia coli TW15901]
gi|425283980|ref|ZP_18675019.1| ribonuclease Z [Escherichia coli TW00353]
gi|425289284|ref|ZP_18680132.1| ribonuclease Z [Escherichia coli 3006]
gi|425380328|ref|ZP_18764366.1| ribonuclease Z [Escherichia coli EC1865]
gi|432417743|ref|ZP_19660347.1| ribonuclease Z [Escherichia coli KTE44]
gi|432481637|ref|ZP_19723594.1| ribonuclease Z [Escherichia coli KTE210]
gi|432527050|ref|ZP_19764143.1| ribonuclease Z [Escherichia coli KTE233]
gi|432564527|ref|ZP_19801108.1| ribonuclease Z [Escherichia coli KTE51]
gi|432576550|ref|ZP_19813010.1| ribonuclease Z [Escherichia coli KTE56]
gi|432637517|ref|ZP_19873387.1| ribonuclease Z [Escherichia coli KTE81]
gi|432675377|ref|ZP_19910836.1| ribonuclease Z [Escherichia coli KTE142]
gi|432686103|ref|ZP_19921400.1| ribonuclease Z [Escherichia coli KTE156]
gi|432692243|ref|ZP_19927471.1| ribonuclease Z [Escherichia coli KTE161]
gi|432737786|ref|ZP_19972544.1| ribonuclease Z [Escherichia coli KTE42]
gi|432750744|ref|ZP_19985348.1| ribonuclease Z [Escherichia coli KTE29]
gi|432806419|ref|ZP_20040347.1| ribonuclease Z [Escherichia coli KTE91]
gi|432832289|ref|ZP_20065863.1| ribonuclease Z [Escherichia coli KTE135]
gi|432835249|ref|ZP_20068788.1| ribonuclease Z [Escherichia coli KTE136]
gi|432875908|ref|ZP_20094068.1| ribonuclease Z [Escherichia coli KTE154]
gi|432935053|ref|ZP_20134490.1| ribonuclease Z [Escherichia coli KTE184]
gi|432955789|ref|ZP_20147667.1| ribonuclease Z [Escherichia coli KTE197]
gi|433048649|ref|ZP_20236002.1| ribonuclease Z [Escherichia coli KTE120]
gi|433130838|ref|ZP_20316273.1| ribonuclease Z [Escherichia coli KTE163]
gi|433194340|ref|ZP_20378330.1| ribonuclease Z [Escherichia coli KTE90]
gi|443618346|ref|YP_007382202.1| ribonuclease BN [Escherichia coli APEC O78]
gi|450246027|ref|ZP_21900768.1| ribonuclease BN [Escherichia coli S17]
gi|67472296|sp|P0A8V0.1|RBN_ECOLI RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|67472297|sp|P0A8V1.1|RBN_SHIFL RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|166991100|sp|A8A2D6.1|RBN_ECOHS RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|189043784|sp|B1IXR8.1|RBN_ECOLC RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808636|sp|B6I7L2.1|RBN_ECOSE RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|259494131|sp|C4ZUB1.1|RBN_ECOBW RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|85675333|dbj|BAA16095.2| binuclear zinc phosphodiesterase [Escherichia coli str. K12 substr.
W3110]
gi|87082078|gb|AAC75328.2| RNase BN, tRNA processing enzyme [Escherichia coli str. K-12
substr. MG1655]
gi|157067435|gb|ABV06690.1| ribonuclease Z [Escherichia coli HS]
gi|169754345|gb|ACA77044.1| ribonuclease BN [Escherichia coli ATCC 8739]
gi|188489613|gb|EDU64716.1| putative ribonuclease BN [Escherichia coli 53638]
gi|209912978|dbj|BAG78052.1| conserved hypothetical protein [Escherichia coli SE11]
gi|238860087|gb|ACR62085.1| binuclear zinc phosphodiesterase [Escherichia coli BW2952]
gi|242377903|emb|CAQ32671.1| RNase BN [Escherichia coli BL21(DE3)]
gi|253323851|gb|ACT28453.1| ribonuclease BN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974181|gb|ACT39852.1| ribonuclease Z [Escherichia coli B str. REL606]
gi|253978348|gb|ACT44018.1| ribonuclease Z [Escherichia coli BL21(DE3)]
gi|257754964|dbj|BAI26466.1| binuclear zinc phosphodiesterase [Escherichia coli O26:H11 str.
11368]
gi|257760008|dbj|BAI31505.1| binuclear zinc phosphodiesterase [Escherichia coli O103:H2 str.
12009]
gi|257765350|dbj|BAI36845.1| binuclear zinc phosphodiesterase [Escherichia coli O111:H- str.
11128]
gi|300404388|gb|EFJ87926.1| ribonuclease Z [Escherichia coli MS 84-1]
gi|300414272|gb|EFJ97582.1| ribonuclease Z [Escherichia coli MS 115-1]
gi|300451557|gb|EFK15177.1| ribonuclease Z [Escherichia coli MS 116-1]
gi|300525271|gb|EFK46340.1| ribonuclease Z [Escherichia coli MS 119-7]
gi|300841446|gb|EFK69206.1| ribonuclease Z [Escherichia coli MS 124-1]
gi|301074168|gb|EFK88974.1| ribonuclease Z [Escherichia coli MS 146-1]
gi|308123433|gb|EFO60695.1| ribonuclease Z [Escherichia coli MS 145-7]
gi|309702579|emb|CBJ01907.1| ribonuclease Z (tRNA endonuclease) [Escherichia coli ETEC H10407]
gi|313651093|gb|EFS15492.1| ribonuclease Z [Shigella flexneri 2a str. 2457T]
gi|315136902|dbj|BAJ44061.1| ribonuclease Z [Escherichia coli DH1]
gi|315255203|gb|EFU35171.1| ribonuclease Z [Escherichia coli MS 85-1]
gi|315615535|gb|EFU96167.1| ribonuclease Z [Escherichia coli 3431]
gi|323156419|gb|EFZ42574.1| ribonuclease Z [Escherichia coli EPECa14]
gi|323176805|gb|EFZ62395.1| ribonuclease Z [Escherichia coli OK1180]
gi|323184412|gb|EFZ69788.1| ribonuclease Z [Escherichia coli OK1357]
gi|324020939|gb|EGB90158.1| ribonuclease Z [Escherichia coli MS 117-3]
gi|331064164|gb|EGI36075.1| ribonuclease Z [Escherichia coli TA271]
gi|332093633|gb|EGI98691.1| ribonuclease Z [Shigella boydii 3594-74]
gi|332754918|gb|EGJ85283.1| ribonuclease Z [Shigella flexneri 4343-70]
gi|333001867|gb|EGK21433.1| ribonuclease Z [Shigella flexneri K-218]
gi|333016252|gb|EGK35583.1| ribonuclease Z [Shigella flexneri K-304]
gi|339415762|gb|AEJ57434.1| ribonuclease Z [Escherichia coli UMNF18]
gi|342363069|gb|EGU27181.1| ribonuclease Z [Escherichia coli XH140A]
gi|344194984|gb|EGV49055.1| ribonuclease Z [Escherichia coli XH001]
gi|345338899|gb|EGW71326.1| ribonuclease Z [Escherichia coli 2534-86]
gi|345350543|gb|EGW82818.1| ribonuclease Z [Escherichia coli STEC_94C]
gi|345353571|gb|EGW85803.1| ribonuclease Z [Escherichia coli 3030-1]
gi|345387488|gb|EGX17310.1| ribonuclease Z [Escherichia coli STEC_S1191]
gi|359332612|dbj|BAL39059.1| binuclear zinc phosphodiesterase [Escherichia coli str. K-12
substr. MDS42]
gi|377992420|gb|EHV55567.1| ribonuclease Z [Escherichia coli DEC6B]
gi|377993724|gb|EHV56855.1| ribonuclease Z [Escherichia coli DEC6A]
gi|378007297|gb|EHV70266.1| ribonuclease Z [Escherichia coli DEC6D]
gi|378011159|gb|EHV74104.1| ribonuclease Z [Escherichia coli DEC6E]
gi|378014991|gb|EHV77888.1| ribonuclease Z [Escherichia coli DEC7A]
gi|378023220|gb|EHV85897.1| ribonuclease Z [Escherichia coli DEC7C]
gi|378029019|gb|EHV91635.1| ribonuclease Z [Escherichia coli DEC7D]
gi|378038384|gb|EHW00899.1| ribonuclease Z [Escherichia coli DEC7E]
gi|378048068|gb|EHW10424.1| ribonuclease Z [Escherichia coli DEC8B]
gi|378053175|gb|EHW15475.1| ribonuclease Z [Escherichia coli DEC8C]
gi|378061364|gb|EHW23549.1| ribonuclease Z [Escherichia coli DEC8D]
gi|378074197|gb|EHW36236.1| ribonuclease Z [Escherichia coli DEC9A]
gi|378076984|gb|EHW38982.1| ribonuclease Z [Escherichia coli DEC9B]
gi|378089977|gb|EHW51817.1| ribonuclease Z [Escherichia coli DEC9D]
gi|378094887|gb|EHW56678.1| ribonuclease Z [Escherichia coli DEC9E]
gi|378110643|gb|EHW72237.1| ribonuclease Z [Escherichia coli DEC10C]
gi|378128199|gb|EHW89584.1| ribonuclease Z [Escherichia coli DEC10E]
gi|378130010|gb|EHW91380.1| ribonuclease Z [Escherichia coli DEC11A]
gi|378131296|gb|EHW92654.1| ribonuclease Z [Escherichia coli DEC10F]
gi|378142623|gb|EHX03825.1| ribonuclease Z [Escherichia coli DEC11B]
gi|378148113|gb|EHX09253.1| ribonuclease Z [Escherichia coli DEC11D]
gi|378169129|gb|EHX30029.1| ribonuclease Z [Escherichia coli DEC12A]
gi|378170003|gb|EHX30889.1| ribonuclease Z [Escherichia coli DEC12C]
gi|378182329|gb|EHX42982.1| ribonuclease Z [Escherichia coli DEC12D]
gi|378185386|gb|EHX46011.1| ribonuclease Z [Escherichia coli DEC13A]
gi|378187627|gb|EHX48238.1| ribonuclease Z [Escherichia coli DEC12E]
gi|378200081|gb|EHX60537.1| ribonuclease Z [Escherichia coli DEC13C]
gi|378200529|gb|EHX60984.1| ribonuclease Z [Escherichia coli DEC13B]
gi|378202561|gb|EHX62988.1| ribonuclease Z [Escherichia coli DEC13D]
gi|378212349|gb|EHX72672.1| ribonuclease Z [Escherichia coli DEC13E]
gi|378217363|gb|EHX77642.1| ribonuclease Z [Escherichia coli DEC14A]
gi|378218928|gb|EHX79197.1| ribonuclease Z [Escherichia coli DEC14B]
gi|378227906|gb|EHX88074.1| ribonuclease Z [Escherichia coli DEC14C]
gi|378231371|gb|EHX91482.1| ribonuclease Z [Escherichia coli DEC14D]
gi|378237559|gb|EHX97582.1| ribonuclease Z [Escherichia coli DEC15A]
gi|378247273|gb|EHY07192.1| ribonuclease Z [Escherichia coli DEC15C]
gi|378254237|gb|EHY14101.1| ribonuclease Z [Escherichia coli DEC15D]
gi|378258876|gb|EHY18692.1| ribonuclease Z [Escherichia coli DEC15E]
gi|383103697|gb|AFG41206.1| ribonuclease Z [Escherichia coli P12b]
gi|385157084|gb|EIF19077.1| ribonuclease Z [Escherichia coli O32:H37 str. P4]
gi|385536967|gb|EIF83852.1| ribonuclease Z [Escherichia coli M919]
gi|385706586|gb|EIG43625.1| ribonuclease Z [Escherichia coli H730]
gi|386121476|gb|EIG70091.1| ribonuclease Z [Escherichia sp. 4_1_40B]
gi|388339433|gb|EIL05818.1| ribonuclease Z [Escherichia coli O103:H2 str. CVM9450]
gi|388342103|gb|EIL08164.1| ribonuclease Z [Escherichia coli O103:H25 str. CVM9340]
gi|388345398|gb|EIL11169.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9534]
gi|388362937|gb|EIL26902.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9574]
gi|388367151|gb|EIL30845.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9545]
gi|388373949|gb|EIL37172.1| hypothetical protein ECO10026_09317 [Escherichia coli O26:H11 str.
CVM10026]
gi|388376292|gb|EIL39227.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9942]
gi|391249940|gb|EIQ09163.1| ribonuclease Z [Shigella flexneri CCH060]
gi|391278185|gb|EIQ36902.1| ribonuclease Z [Shigella boydii 4444-74]
gi|391300603|gb|EIQ58515.1| ribonuclease Z [Shigella dysenteriae 225-75]
gi|391312678|gb|EIQ70286.1| ribonuclease Z [Escherichia coli EPEC C342-62]
gi|394384390|gb|EJE61950.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9602]
gi|394396090|gb|EJE72470.1| ribonuclease BN [Escherichia coli O26:H11 str. CVM10224]
gi|394398738|gb|EJE74880.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9634]
gi|394403040|gb|EJE78716.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10021]
gi|394409831|gb|EJE84288.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9553]
gi|394412610|gb|EJE86740.1| ribonuclease Z [Escherichia coli O111:H11 str. CVM9455]
gi|394424806|gb|EJE97877.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM9952]
gi|394429898|gb|EJF02287.1| ribonuclease Z [Escherichia coli O26:H11 str. CVM10030]
gi|397896879|gb|EJL13290.1| ribonuclease Z [Shigella flexneri 6603-63]
gi|404291103|gb|EJZ48001.1| ribonuclease Z [Escherichia sp. 1_1_43]
gi|408193218|gb|EKI18771.1| ribonuclease Z [Escherichia coli TW15901]
gi|408201670|gb|EKI26819.1| ribonuclease Z [Escherichia coli TW00353]
gi|408213836|gb|EKI38315.1| ribonuclease Z [Escherichia coli 3006]
gi|408296394|gb|EKJ14635.1| ribonuclease Z [Escherichia coli EC1865]
gi|408568172|gb|EKK44210.1| ribonuclease Z [Escherichia coli 8.0566]
gi|408569162|gb|EKK45167.1| ribonuclease Z [Escherichia coli 8.0569]
gi|421934345|gb|EKT92120.1| ribonuclease BN [Escherichia coli O111:H8 str. CFSAN001632]
gi|421936116|gb|EKT93784.1| ribonuclease BN [Escherichia coli O26:H11 str. CFSAN001629]
gi|421941825|gb|EKT99201.1| ribonuclease BN [Escherichia coli O111:H11 str. CFSAN001630]
gi|430938987|gb|ELC59210.1| ribonuclease Z [Escherichia coli KTE44]
gi|431007009|gb|ELD21978.1| ribonuclease Z [Escherichia coli KTE210]
gi|431063309|gb|ELD72558.1| ribonuclease Z [Escherichia coli KTE233]
gi|431092943|gb|ELD98614.1| ribonuclease Z [Escherichia coli KTE51]
gi|431114585|gb|ELE18113.1| ribonuclease Z [Escherichia coli KTE56]
gi|431170711|gb|ELE70900.1| ribonuclease Z [Escherichia coli KTE81]
gi|431213912|gb|ELF11767.1| ribonuclease Z [Escherichia coli KTE142]
gi|431221885|gb|ELF19182.1| ribonuclease Z [Escherichia coli KTE156]
gi|431226591|gb|ELF23750.1| ribonuclease Z [Escherichia coli KTE161]
gi|431282246|gb|ELF73131.1| ribonuclease Z [Escherichia coli KTE42]
gi|431296726|gb|ELF86437.1| ribonuclease Z [Escherichia coli KTE29]
gi|431354561|gb|ELG41287.1| ribonuclease Z [Escherichia coli KTE91]
gi|431376259|gb|ELG61582.1| ribonuclease Z [Escherichia coli KTE135]
gi|431385609|gb|ELG69596.1| ribonuclease Z [Escherichia coli KTE136]
gi|431420180|gb|ELH02512.1| ribonuclease Z [Escherichia coli KTE154]
gi|431453221|gb|ELH33631.1| ribonuclease Z [Escherichia coli KTE184]
gi|431467175|gb|ELH47186.1| ribonuclease Z [Escherichia coli KTE197]
gi|431564420|gb|ELI37594.1| ribonuclease Z [Escherichia coli KTE120]
gi|431645635|gb|ELJ13179.1| ribonuclease Z [Escherichia coli KTE163]
gi|431715790|gb|ELJ79935.1| ribonuclease Z [Escherichia coli KTE90]
gi|443422854|gb|AGC87758.1| ribonuclease BN [Escherichia coli APEC O78]
gi|449319731|gb|EMD09777.1| ribonuclease BN [Escherichia coli S17]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|218705802|ref|YP_002413321.1| ribonuclease Z [Escherichia coli UMN026]
gi|300896943|ref|ZP_07115426.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331663785|ref|ZP_08364695.1| ribonuclease Z [Escherichia coli TA143]
gi|417587288|ref|ZP_12238058.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|422334240|ref|ZP_16415247.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|432354211|ref|ZP_19597484.1| ribonuclease Z [Escherichia coli KTE2]
gi|432402563|ref|ZP_19645315.1| ribonuclease Z [Escherichia coli KTE26]
gi|432426827|ref|ZP_19669328.1| ribonuclease Z [Escherichia coli KTE181]
gi|432461293|ref|ZP_19703442.1| ribonuclease Z [Escherichia coli KTE204]
gi|432476518|ref|ZP_19718516.1| ribonuclease Z [Escherichia coli KTE208]
gi|432518342|ref|ZP_19755530.1| ribonuclease Z [Escherichia coli KTE228]
gi|432538463|ref|ZP_19775365.1| ribonuclease Z [Escherichia coli KTE235]
gi|432632058|ref|ZP_19867984.1| ribonuclease Z [Escherichia coli KTE80]
gi|432641772|ref|ZP_19877606.1| ribonuclease Z [Escherichia coli KTE83]
gi|432666667|ref|ZP_19902248.1| ribonuclease Z [Escherichia coli KTE116]
gi|432775364|ref|ZP_20009635.1| ribonuclease Z [Escherichia coli KTE54]
gi|432887253|ref|ZP_20101327.1| ribonuclease Z [Escherichia coli KTE158]
gi|432913451|ref|ZP_20119148.1| ribonuclease Z [Escherichia coli KTE190]
gi|433019346|ref|ZP_20207561.1| ribonuclease Z [Escherichia coli KTE105]
gi|433053879|ref|ZP_20241058.1| ribonuclease Z [Escherichia coli KTE122]
gi|433068584|ref|ZP_20255373.1| ribonuclease Z [Escherichia coli KTE128]
gi|433159316|ref|ZP_20344153.1| ribonuclease Z [Escherichia coli KTE177]
gi|433179127|ref|ZP_20363526.1| ribonuclease Z [Escherichia coli KTE82]
gi|254808635|sp|B7N5N4.1|RBN_ECOLU RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|218432899|emb|CAR13793.1| binuclear zinc phosphodiesterase [Escherichia coli UMN026]
gi|300359254|gb|EFJ75124.1| ribonuclease Z [Escherichia coli MS 198-1]
gi|331059584|gb|EGI31561.1| ribonuclease Z [Escherichia coli TA143]
gi|345336424|gb|EGW68860.1| ribonuclease Z [Escherichia coli STEC_C165-02]
gi|373244785|gb|EHP64264.1| ribonuclease Z [Escherichia coli 4_1_47FAA]
gi|430875384|gb|ELB98926.1| ribonuclease Z [Escherichia coli KTE2]
gi|430925034|gb|ELC45707.1| ribonuclease Z [Escherichia coli KTE26]
gi|430955759|gb|ELC74541.1| ribonuclease Z [Escherichia coli KTE181]
gi|430988983|gb|ELD05452.1| ribonuclease Z [Escherichia coli KTE204]
gi|431005134|gb|ELD20342.1| ribonuclease Z [Escherichia coli KTE208]
gi|431050964|gb|ELD60640.1| ribonuclease Z [Escherichia coli KTE228]
gi|431069352|gb|ELD77681.1| ribonuclease Z [Escherichia coli KTE235]
gi|431170258|gb|ELE70452.1| ribonuclease Z [Escherichia coli KTE80]
gi|431181655|gb|ELE81517.1| ribonuclease Z [Escherichia coli KTE83]
gi|431200961|gb|ELE99679.1| ribonuclease Z [Escherichia coli KTE116]
gi|431317976|gb|ELG05745.1| ribonuclease Z [Escherichia coli KTE54]
gi|431416251|gb|ELG98738.1| ribonuclease Z [Escherichia coli KTE158]
gi|431439751|gb|ELH21084.1| ribonuclease Z [Escherichia coli KTE190]
gi|431530823|gb|ELI07499.1| ribonuclease Z [Escherichia coli KTE105]
gi|431569951|gb|ELI42880.1| ribonuclease Z [Escherichia coli KTE122]
gi|431583656|gb|ELI55651.1| ribonuclease Z [Escherichia coli KTE128]
gi|431677548|gb|ELJ43623.1| ribonuclease Z [Escherichia coli KTE177]
gi|431700947|gb|ELJ65871.1| ribonuclease Z [Escherichia coli KTE82]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|433043847|ref|ZP_20231342.1| ribonuclease Z [Escherichia coli KTE117]
gi|73856267|gb|AAZ88974.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|431555685|gb|ELI29524.1| ribonuclease Z [Escherichia coli KTE117]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|417713323|ref|ZP_12362289.1| ribonuclease Z [Shigella flexneri K-272]
gi|333002638|gb|EGK22198.1| ribonuclease Z [Shigella flexneri K-272]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|332523610|ref|ZP_08399862.1| ribonuclease Z [Streptococcus porcinus str. Jelinkova 176]
gi|332314874|gb|EGJ27859.1| ribonuclease Z [Streptococcus porcinus str. Jelinkova 176]
Length = 310
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 53/265 (20%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP +++SR + T IF P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIEKIFITHLHGDHIFGLPGFLSSRAFQASEEQTDVDIFGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK V+ + S +++ ++ ++G+ E + V + H I GY +
Sbjct: 96 LGIKSFVQNSLSVSGSRLPYKIHYHEMTEDNLGKILET-DKFTVYAERLAHTIFCLGYRV 154
Query: 212 YLLRKKLKKQYIHLKGKQIEKLKKSGV-----------------------EITDIILSPE 248
++K L+ E LK++GV + D I +P+
Sbjct: 155 --VQKDLEGTL------DAEALKEAGVPFGPLFGKIKNGQDVVLEDGRLIQAQDFISAPK 206
Query: 249 ----VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIEN 304
+ GDT D A +L+ EAT+ + I A+ HGH+ + +
Sbjct: 207 KGKIITILGDTRKSLASQRLAKD---ADVLVHEATYGKGDDKI--ARNHGHSTNLQAAQI 261
Query: 305 AKWIRNKAVLLTHFSSRYHIEDIRQ 329
AK K +LL H S+R+ D RQ
Sbjct: 262 AKDAGVKRLLLNHVSARFLGRDCRQ 286
>gi|293415562|ref|ZP_06658205.1| ribonuclease Z [Escherichia coli B185]
gi|291433210|gb|EFF06189.1| ribonuclease Z [Escherichia coli B185]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|417133550|ref|ZP_11978335.1| ribonuclease BN [Escherichia coli 5.0588]
gi|386151404|gb|EIH02693.1| ribonuclease BN [Escherichia coli 5.0588]
Length = 294
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 163
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 164 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 217
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 218 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGMLIITHVSSRYDDKGCQHLLRE 275
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 276 CRS-----IFPATE 284
>gi|383820158|ref|ZP_09975416.1| ribonuclease Z [Mycobacterium phlei RIVM601174]
gi|383335687|gb|EID14115.1| ribonuclease Z [Mycobacterium phlei RIVM601174]
Length = 311
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 27/220 (12%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
+TH H DH G+P V L + K P + P S +E +L H S+ + V
Sbjct: 61 VTHFHGDHCLGVPGVVQRLSLDDAKHPVHAYFPASGREYFTRLR--HASVFYERAEVREV 118
Query: 180 ALDV-GETYEMRNDIVVRPFKTHHVIPSQGY-VIYLLRKKLKKQYI---HLKGKQIEKLK 234
+D G E R ++ + H I + GY ++ R++ + + L G + +LK
Sbjct: 119 PVDGDGAIAEGRFGVLY-ARRLDHPIDAVGYRLVEADRRRFVPELLARHGLGGPIVGELK 177
Query: 235 KSGVEITDIILSPEVAFTGDTTSE-------FMLNPRNADALR-----AKILITEATFLD 282
++G +I + D T E F+++ R DA+ A +L+ EATFLD
Sbjct: 178 RAG----EITVGQRRIRLADVTVERTGQKFAFVMDTRLCDAVYELADGADMLVIEATFLD 233
Query: 283 DEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++ + A ++GH S+ A + ++LTHFS RY
Sbjct: 234 EDAEL--ADRYGHLTASQAGRVAAQCHVRRLVLTHFSQRY 271
>gi|125718241|ref|YP_001035374.1| ribonuclease Z [Streptococcus sanguinis SK36]
gi|166991511|sp|A3CNR9.1|RNZ_STRSV RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|125498158|gb|ABN44824.1| Ribonuclease Z, putative [Streptococcus sanguinis SK36]
Length = 309
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 33/236 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V L + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRSFQANEEQTNLEIYGPKGIKNFV--LSSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHL 225
+D D +G+ E + V K H I GY + L KL++ +
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRVMQKDLEGTLDADKLREVGVPF 175
Query: 226 --------KGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKI 273
G+ I + + D I +P +A GDT + A+ A +
Sbjct: 176 GPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKIIAILGDTRK---TSASVRLAVAADV 232
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EAT+ + + A+ HGH+ + E AK K +LL H S+R+ +DI Q
Sbjct: 233 LVHEATYGKGDEKL--ARNHGHSTNMQAAEVAKEAGAKRLLLNHISARFLAKDISQ 286
>gi|157158471|ref|YP_001463616.1| ribonuclease Z [Escherichia coli E24377A]
gi|218554828|ref|YP_002387741.1| ribonuclease Z [Escherichia coli IAI1]
gi|218695871|ref|YP_002403538.1| ribonuclease Z [Escherichia coli 55989]
gi|300926372|ref|ZP_07142172.1| ribonuclease Z [Escherichia coli MS 182-1]
gi|301328757|ref|ZP_07221810.1| ribonuclease Z [Escherichia coli MS 78-1]
gi|307311168|ref|ZP_07590812.1| ribonuclease BN [Escherichia coli W]
gi|378712294|ref|YP_005277187.1| ribonuclease BN [Escherichia coli KO11FL]
gi|407470152|ref|YP_006783405.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481185|ref|YP_006778334.1| ribonuclease Z [Escherichia coli O104:H4 str. 2011C-3493]
gi|410481732|ref|YP_006769278.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417581787|ref|ZP_12232589.1| ribonuclease Z [Escherichia coli STEC_B2F1]
gi|417667683|ref|ZP_12317228.1| ribonuclease Z [Escherichia coli STEC_O31]
gi|417805824|ref|ZP_12452773.1| ribonuclease Z [Escherichia coli O104:H4 str. LB226692]
gi|417833567|ref|ZP_12480015.1| ribonuclease Z [Escherichia coli O104:H4 str. 01-09591]
gi|419804006|ref|ZP_14329170.1| ribonuclease BN [Escherichia coli AI27]
gi|422956368|ref|ZP_16968842.1| ribonuclease Z [Escherichia coli H494]
gi|423019820|ref|ZP_17010529.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4404]
gi|423030808|ref|ZP_17021496.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4623]
gi|423045482|ref|ZP_17036142.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423054021|ref|ZP_17042828.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060996|ref|ZP_17049792.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423706305|ref|ZP_17680688.1| ribonuclease Z [Escherichia coli B799]
gi|429776690|ref|ZP_19308669.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02033-1]
gi|429797137|ref|ZP_19328944.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02281]
gi|429812147|ref|ZP_19343832.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03439]
gi|429914265|ref|ZP_19380213.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4984]
gi|429925115|ref|ZP_19391029.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929052|ref|ZP_19394954.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935591|ref|ZP_19401477.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4988]
gi|429943951|ref|ZP_19409814.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-6006]
gi|429954863|ref|ZP_19420695.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0466]
gi|432765656|ref|ZP_20000094.1| ribonuclease Z [Escherichia coli KTE48]
gi|433092650|ref|ZP_20278917.1| ribonuclease Z [Escherichia coli KTE138]
gi|450218609|ref|ZP_21895983.1| ribonuclease Z [Escherichia coli O08]
gi|166991099|sp|A7ZP87.1|RBN_ECO24 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808631|sp|B7LAT4.1|RBN_ECO55 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|254808634|sp|B7M5V1.1|RBN_ECO8A RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|157080501|gb|ABV20209.1| ribonuclease Z [Escherichia coli E24377A]
gi|218352603|emb|CAU98384.1| binuclear zinc phosphodiesterase [Escherichia coli 55989]
gi|218361596|emb|CAQ99188.1| binuclear zinc phosphodiesterase [Escherichia coli IAI1]
gi|300417649|gb|EFK00960.1| ribonuclease Z [Escherichia coli MS 182-1]
gi|300844905|gb|EFK72665.1| ribonuclease Z [Escherichia coli MS 78-1]
gi|306908674|gb|EFN39171.1| ribonuclease BN [Escherichia coli W]
gi|323377855|gb|ADX50123.1| ribonuclease BN [Escherichia coli KO11FL]
gi|340734449|gb|EGR63579.1| ribonuclease Z [Escherichia coli O104:H4 str. 01-09591]
gi|340739736|gb|EGR73968.1| ribonuclease Z [Escherichia coli O104:H4 str. LB226692]
gi|345337558|gb|EGW69990.1| ribonuclease Z [Escherichia coli STEC_B2F1]
gi|354889500|gb|EHF49749.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4404]
gi|354897506|gb|EHF57664.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4623]
gi|354912918|gb|EHF72916.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915923|gb|EHF75899.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917838|gb|EHF77800.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C4]
gi|371599903|gb|EHN88681.1| ribonuclease Z [Escherichia coli H494]
gi|384472933|gb|EIE56980.1| ribonuclease BN [Escherichia coli AI27]
gi|385712189|gb|EIG49144.1| ribonuclease Z [Escherichia coli B799]
gi|397784829|gb|EJK95682.1| ribonuclease Z [Escherichia coli STEC_O31]
gi|406776894|gb|AFS56318.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407053482|gb|AFS73533.1| ribonuclease Z [Escherichia coli O104:H4 str. 2011C-3493]
gi|407066187|gb|AFS87234.1| ribonuclease Z [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429362087|gb|EKY98735.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02281]
gi|429362663|gb|EKY99309.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02033-1]
gi|429379002|gb|EKZ15508.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03439]
gi|429405269|gb|EKZ41535.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4984]
gi|429414495|gb|EKZ50670.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4987]
gi|429421104|gb|EKZ57226.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4986]
gi|429432125|gb|EKZ68165.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-4988]
gi|429438536|gb|EKZ74529.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-6006]
gi|429457820|gb|EKZ93658.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0466]
gi|431309831|gb|ELF98024.1| ribonuclease Z [Escherichia coli KTE48]
gi|431609980|gb|ELI79285.1| ribonuclease Z [Escherichia coli KTE138]
gi|449317669|gb|EMD07754.1| ribonuclease Z [Escherichia coli O08]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGMLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|424059327|ref|ZP_17796818.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|445492437|ref|ZP_21460384.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
gi|404670065|gb|EKB37957.1| ribonuclease Z [Acinetobacter baumannii Ab33333]
gi|444763676|gb|ELW88012.1| putative ribonuclease Z [Acinetobacter baumannii AA-014]
Length = 324
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 38/243 (15%)
Query: 116 QNFV--FITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
QN V ITH H DH GL +AS G+ P I + P +++++ FEI L ++
Sbjct: 54 QNLVAICITHVHGDHCYGLVGLLASAGMNARSKPLIVIAP---KEIQQWFEITAQLTDLY 110
Query: 174 LNLDLVALDVGETY---EMRNDIVVRPFKTHHVIPSQGYVIYL--LRKKLKKQ------- 221
L L +DV E ++ ++ +V+ H +PS + IY+ ++KKL +
Sbjct: 111 LPYSLQFIDVNEAMQPQQITDEFIVQAHPLSHRVPSFAFSIYIKSIQKKLDTKALTQLGV 170
Query: 222 -----YIHLK-GKQIEKLKKSGVEITDIIL----SPEVAFTGDTTSEFMLNPRNADALR- 270
+ HLK G IE + ++ D I GD +L DA +
Sbjct: 171 PQGDMWGHLKRGYNIE-FEGQTLKAQDFIKIQNHQVHAIIGGDNDQPELL----VDACKD 225
Query: 271 AKILITEATFLDDEMS-IEHAQQHGHTHL-SEIIENAKWIRNKAVLLTHFSSRYHIEDIR 328
A++LI E+T+L + + H + +E +E + N ++LTHFS R+ + +
Sbjct: 226 AQLLIHESTYLQTVLDKVGKGPMHSSAKMVAEFVEQQS-LSN--LILTHFSPRHQDKAGQ 282
Query: 329 QAV 331
QA+
Sbjct: 283 QAI 285
>gi|258510650|ref|YP_003184084.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477376|gb|ACV57695.1| ribonuclease Z [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 313
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 101/243 (41%), Gaps = 37/243 (15%)
Query: 104 FDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKL 162
FD P R + VFITH H DHI GLP +++R N+ P ++ PP I+ V
Sbjct: 47 FDAPFGPNRV---DRVFITHLHGDHIFGLPGLLSTRSFPENVGPLRLYGPPGIRAFVRAT 103
Query: 163 FEIHRSLGNVELNLDLVALDVGETYEMRNDI-VVRPFKTHHVIPSQGYVI--YLLRKKLK 219
+ ++ ++ + E +R + VR H IPS GY + +L
Sbjct: 104 LDGSQT--HLSYEIQFHEWTSPEPAPVREGLYTVRAALLDHAIPSYGYRVEEAPFPGRLH 161
Query: 220 KQYIHLKGKQIEKLK---KSGVEIT----------DIILSPE----VAFTGDTTSEFMLN 262
+ +G Q L K+G ++T D + E +A GDT
Sbjct: 162 ADRLRAEGLQPSPLWSQLKAGEDVTLPDGRRLRAADFVDPAEPGRVIAILGDT------R 215
Query: 263 PRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
P A A A L+ EATFLD + A H+ + E A+ K ++LTH S
Sbjct: 216 PCKAAVELARGADCLVHEATFLDRHAHL--ASAFFHSTARQAAEIAREAEAKCLILTHVS 273
Query: 320 SRY 322
+RY
Sbjct: 274 ARY 276
>gi|52549192|gb|AAU83041.1| metallo-beta-lactamase [uncultured archaeon GZfos26D6]
Length = 335
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 35/227 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FI+H H DH+ G+P + + L + + P P + V+K +LG N ++
Sbjct: 84 IFISHFHADHVLGIPGLLQTMALQDRQEPLEIYGP---KQVDKFLYHLLALGYAGRNFEV 140
Query: 179 VALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQ 229
A+++ G+ R +R KT H IPS GYV+ R+K + I G
Sbjct: 141 KAIELRPGDVVR-RAGYEIRVIKTVHNIPSIGYVLEEDMRPGRFNREKAIELGIK-PGPF 198
Query: 230 IEKLKKS------GVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKILI 275
KL+ G EI + ++ P ++ +TGDT + NAD +LI
Sbjct: 199 FSKLQSGRSILLDGKEIRPEQVVGPPRPGRKIVYTGDTRPCDSVIEASENAD-----LLI 253
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
++T E + E+A + H+ E E AK + ++LTH S+RY
Sbjct: 254 HDSTL--SEETKEYAINYMHSTALEAAEVAKKASVRKLILTHISARY 298
>gi|114052516|ref|NP_001039792.1| zinc phosphodiesterase ELAC protein 1 [Bos taurus]
gi|109893820|sp|Q29RY4.1|RNZ1_BOVIN RecName: Full=Zinc phosphodiesterase ELAC protein 1; AltName:
Full=ElaC homolog protein 1; AltName: Full=Ribonuclease
Z 1; Short=RNase Z 1; AltName: Full=tRNA 3 endonuclease
1; AltName: Full=tRNase Z 1
gi|88758635|gb|AAI13357.1| ElaC homolog 1 (E. coli) [Bos taurus]
gi|296473700|tpg|DAA15815.1| TPA: elaC homolog 1 [Bos taurus]
gi|440905134|gb|ELR55559.1| Zinc phosphodiesterase ELAC protein 1 [Bos grunniens mutus]
Length = 363
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--------- 164
+FITH H DH GLP + + S + +P I+ P +++ + + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 165 --IHRSLGNVE----------LNLD------------LVALDVGE-TYEMRND--IVVRP 197
+H + + + +D + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPTEELQESVQVDKTDNPPKEGEGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVDDAGVKLCFEADLLIHEATLDDTQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK + K ++LTHFS RY
Sbjct: 295 QMAATFAKLCQAKRLVLTHFSQRY 318
>gi|395645335|ref|ZP_10433195.1| Ribonuclease Z [Methanofollis liminatans DSM 4140]
gi|395442075|gb|EJG06832.1| Ribonuclease Z [Methanofollis liminatans DSM 4140]
Length = 315
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH G+P V + P +P E V + +G L+ DL
Sbjct: 63 IFITHWHADHFLGVPGLVQTLAFNGRTEP---LPVYGPEGVHDFVDYTLKIGRTRLSFDL 119
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKK---LKKQ----YI 223
+ + +R D V F T H + S GYV+ R+K L Q +
Sbjct: 120 QPVTLAPGSIVRFDGYQVEAFATCHGMTSLGYVLREDSRPGRFDREKAISLGVQPGPLFG 179
Query: 224 HLKGKQIEKLKKSGVEIT---DIILSP-----EVAFTGDTTSEFMLNPRNADALR-AKIL 274
L+ + + + G E+T D IL P V ++GDT L+ L A +L
Sbjct: 180 RLQRGEAVTVVRDGEEVTVTPDKILGPPRRGRTVIYSGDTRP---LHHGPISGLEDADLL 236
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIEDIRQ 329
I +ATF D+ ++ A + H+ E E A +R + + L H SSRY HI+D Q
Sbjct: 237 IHDATF--DDTELDRAGEVFHSTAGEAGEAAAALRAQTLALVHISSRYTSTANHIQDAGQ 294
>gi|419887743|ref|ZP_14408306.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
gi|388362154|gb|EIL26194.1| ribonuclease Z [Escherichia coli O111:H8 str. CVM9570]
Length = 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 95
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 96 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 152
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 153 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 206
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 207 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 264
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 265 CRS-----IFPATE 273
>gi|312973471|ref|ZP_07787643.1| ribonuclease Z [Escherichia coli 1827-70]
gi|415798478|ref|ZP_11498453.1| ribonuclease Z [Escherichia coli E128010]
gi|415813410|ref|ZP_11505219.1| ribonuclease Z [Escherichia coli LT-68]
gi|417299894|ref|ZP_12087121.1| ribonuclease BN [Escherichia coli 900105 (10e)]
gi|417618869|ref|ZP_12269283.1| ribonuclease Z [Escherichia coli G58-1]
gi|417624161|ref|ZP_12274460.1| ribonuclease Z [Escherichia coli STEC_H.1.8]
gi|417640027|ref|ZP_12290168.1| ribonuclease Z [Escherichia coli TX1999]
gi|417729194|ref|ZP_12377892.1| ribonuclease Z [Shigella flexneri K-671]
gi|417734530|ref|ZP_12383181.1| ribonuclease Z [Shigella flexneri 2747-71]
gi|417744148|ref|ZP_12392674.1| ribonuclease Z [Shigella flexneri 2930-71]
gi|419154669|ref|ZP_13699232.1| ribonuclease Z [Escherichia coli DEC6C]
gi|419197777|ref|ZP_13741163.1| ribonuclease Z [Escherichia coli DEC8A]
gi|419222278|ref|ZP_13765200.1| ribonuclease Z [Escherichia coli DEC8E]
gi|419238575|ref|ZP_13781290.1| ribonuclease Z [Escherichia coli DEC9C]
gi|419255732|ref|ZP_13798248.1| ribonuclease Z [Escherichia coli DEC10A]
gi|419261954|ref|ZP_13804371.1| ribonuclease Z [Escherichia coli DEC10B]
gi|419273445|ref|ZP_13815740.1| ribonuclease Z [Escherichia coli DEC10D]
gi|419300996|ref|ZP_13842995.1| ribonuclease Z [Escherichia coli DEC11C]
gi|419312134|ref|ZP_13853996.1| ribonuclease Z [Escherichia coli DEC11E]
gi|419323722|ref|ZP_13865415.1| ribonuclease Z [Escherichia coli DEC12B]
gi|419397397|ref|ZP_13938165.1| ribonuclease Z [Escherichia coli DEC15B]
gi|420321171|ref|ZP_14823000.1| ribonuclease Z [Shigella flexneri 2850-71]
gi|420336964|ref|ZP_14838533.1| ribonuclease Z [Shigella flexneri K-315]
gi|420342593|ref|ZP_14844066.1| ribonuclease Z [Shigella flexneri K-404]
gi|420386334|ref|ZP_14885684.1| ribonuclease Z [Escherichia coli EPECa12]
gi|421683347|ref|ZP_16123142.1| ribonuclease Z [Shigella flexneri 1485-80]
gi|422790472|ref|ZP_16843176.1| ribonuclease BN [Escherichia coli TA007]
gi|310332066|gb|EFP99301.1| ribonuclease Z [Escherichia coli 1827-70]
gi|323161604|gb|EFZ47489.1| ribonuclease Z [Escherichia coli E128010]
gi|323171951|gb|EFZ57595.1| ribonuclease Z [Escherichia coli LT-68]
gi|323973026|gb|EGB68220.1| ribonuclease BN [Escherichia coli TA007]
gi|332755319|gb|EGJ85683.1| ribonuclease Z [Shigella flexneri K-671]
gi|332756604|gb|EGJ86955.1| ribonuclease Z [Shigella flexneri 2747-71]
gi|332766089|gb|EGJ96299.1| ribonuclease Z [Shigella flexneri 2930-71]
gi|345375583|gb|EGX07530.1| ribonuclease Z [Escherichia coli G58-1]
gi|345377122|gb|EGX09054.1| ribonuclease Z [Escherichia coli STEC_H.1.8]
gi|345393029|gb|EGX22807.1| ribonuclease Z [Escherichia coli TX1999]
gi|377997251|gb|EHV60358.1| ribonuclease Z [Escherichia coli DEC6C]
gi|378046334|gb|EHW08713.1| ribonuclease Z [Escherichia coli DEC8A]
gi|378065367|gb|EHW27515.1| ribonuclease Z [Escherichia coli DEC8E]
gi|378083614|gb|EHW45545.1| ribonuclease Z [Escherichia coli DEC9C]
gi|378099671|gb|EHW61374.1| ribonuclease Z [Escherichia coli DEC10A]
gi|378105644|gb|EHW67283.1| ribonuclease Z [Escherichia coli DEC10B]
gi|378115932|gb|EHW77465.1| ribonuclease Z [Escherichia coli DEC10D]
gi|378150612|gb|EHX11727.1| ribonuclease Z [Escherichia coli DEC11C]
gi|378157762|gb|EHX18793.1| ribonuclease Z [Escherichia coli DEC11E]
gi|378164798|gb|EHX25739.1| ribonuclease Z [Escherichia coli DEC12B]
gi|378243518|gb|EHY03464.1| ribonuclease Z [Escherichia coli DEC15B]
gi|386256729|gb|EIJ12223.1| ribonuclease BN [Escherichia coli 900105 (10e)]
gi|391247692|gb|EIQ06938.1| ribonuclease Z [Shigella flexneri 2850-71]
gi|391260703|gb|EIQ19757.1| ribonuclease Z [Shigella flexneri K-315]
gi|391265666|gb|EIQ24633.1| ribonuclease Z [Shigella flexneri K-404]
gi|391305044|gb|EIQ62839.1| ribonuclease Z [Escherichia coli EPECa12]
gi|404338846|gb|EJZ65290.1| ribonuclease Z [Shigella flexneri 1485-80]
Length = 294
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 163
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 164 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 217
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 218 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 275
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 276 CRS-----IFPATE 284
>gi|242398813|ref|YP_002994237.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
gi|259494147|sp|C6A2P3.1|RNZ_THESM RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|242265206|gb|ACS89888.1| Ribonuclease Z [Thermococcus sibiricus MM 739]
Length = 306
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 102/235 (43%), Gaps = 30/235 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L+ +P I+ P E ++ + G + +
Sbjct: 57 IFITHFHGDHYLGLMSLIQTMTLWKRERPLYIYGPKYTFEFIQN----YLKSGFFRPSFE 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK-----LKKQYIHLK-GKQIE 231
+ ++GET D + FK H IP+ GYV K+ K + + LK G ++
Sbjct: 113 IHIHELGETRLKFKDYEIWSFKVDHGIPALGYVFKENDKRGNFDVEKIRELGLKPGPWMK 172
Query: 232 KLKKSG--------VEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEAT 279
KL+ G + + D+ P ++ +TGDT + RA +LI EAT
Sbjct: 173 KLEIKGKIEINGKLIYLEDVTGEPKKGVKIVYTGDTEQ---CERIKLFSERADLLIHEAT 229
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+L S E H+ + E E AK + + + L H + RY E+ Q K+
Sbjct: 230 YL----SREDKGDSYHSTVEEACETAKRAKVELLALFHRAPRYKYEEYVQEANKI 280
>gi|300931381|ref|ZP_07146710.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|386614883|ref|YP_006134549.1| ribonuclease Z [Escherichia coli UMNK88]
gi|387507656|ref|YP_006159912.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|419076281|ref|ZP_13621799.1| ribonuclease Z [Escherichia coli DEC3F]
gi|419115608|ref|ZP_13660625.1| ribonuclease Z [Escherichia coli DEC5A]
gi|419121236|ref|ZP_13666192.1| ribonuclease Z [Escherichia coli DEC5B]
gi|419126913|ref|ZP_13671798.1| ribonuclease Z [Escherichia coli DEC5C]
gi|419132293|ref|ZP_13677130.1| ribonuclease Z [Escherichia coli DEC5D]
gi|419137326|ref|ZP_13682122.1| ribonuclease Z [Escherichia coli DEC5E]
gi|420281489|ref|ZP_14783727.1| ribonuclease Z [Escherichia coli TW06591]
gi|425144939|ref|ZP_18544948.1| ribonuclease Z [Escherichia coli 10.0869]
gi|425249987|ref|ZP_18642936.1| ribonuclease Z [Escherichia coli 5905]
gi|425262060|ref|ZP_18654090.1| ribonuclease Z [Escherichia coli EC96038]
gi|425268098|ref|ZP_18659742.1| ribonuclease Z [Escherichia coli 5412]
gi|432450424|ref|ZP_19692689.1| ribonuclease Z [Escherichia coli KTE193]
gi|432486076|ref|ZP_19727991.1| ribonuclease Z [Escherichia coli KTE212]
gi|432627921|ref|ZP_19863897.1| ribonuclease Z [Escherichia coli KTE77]
gi|432671341|ref|ZP_19906870.1| ribonuclease Z [Escherichia coli KTE119]
gi|433034103|ref|ZP_20221819.1| ribonuclease Z [Escherichia coli KTE112]
gi|433174191|ref|ZP_20358716.1| ribonuclease Z [Escherichia coli KTE232]
gi|445013023|ref|ZP_21329141.1| ribonuclease Z [Escherichia coli PA48]
gi|300460751|gb|EFK24244.1| ribonuclease Z [Escherichia coli MS 187-1]
gi|332344052|gb|AEE57386.1| ribonuclease Z [Escherichia coli UMNK88]
gi|374359650|gb|AEZ41357.1| ribonuclease Z [Escherichia coli O55:H7 str. RM12579]
gi|377921322|gb|EHU85321.1| ribonuclease Z [Escherichia coli DEC3F]
gi|377960202|gb|EHV23686.1| ribonuclease Z [Escherichia coli DEC5A]
gi|377966460|gb|EHV29871.1| ribonuclease Z [Escherichia coli DEC5B]
gi|377975025|gb|EHV38350.1| ribonuclease Z [Escherichia coli DEC5C]
gi|377975256|gb|EHV38577.1| ribonuclease Z [Escherichia coli DEC5D]
gi|377984319|gb|EHV47554.1| ribonuclease Z [Escherichia coli DEC5E]
gi|390781776|gb|EIO49453.1| ribonuclease Z [Escherichia coli TW06591]
gi|408163845|gb|EKH91692.1| ribonuclease Z [Escherichia coli 5905]
gi|408180727|gb|EKI07332.1| ribonuclease Z [Escherichia coli EC96038]
gi|408182740|gb|EKI09224.1| ribonuclease Z [Escherichia coli 5412]
gi|408591660|gb|EKK66081.1| ribonuclease Z [Escherichia coli 10.0869]
gi|430979814|gb|ELC96579.1| ribonuclease Z [Escherichia coli KTE193]
gi|431015285|gb|ELD28840.1| ribonuclease Z [Escherichia coli KTE212]
gi|431162532|gb|ELE62973.1| ribonuclease Z [Escherichia coli KTE77]
gi|431210260|gb|ELF08322.1| ribonuclease Z [Escherichia coli KTE119]
gi|431551109|gb|ELI25096.1| ribonuclease Z [Escherichia coli KTE112]
gi|431691935|gb|ELJ57380.1| ribonuclease Z [Escherichia coli KTE232]
gi|444624665|gb|ELV98547.1| ribonuclease Z [Escherichia coli PA48]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|161367564|ref|NP_288846.2| ribonuclease Z [Escherichia coli O157:H7 str. EDL933]
gi|162139773|ref|NP_311183.2| ribonuclease Z [Escherichia coli O157:H7 str. Sakai]
gi|168798441|ref|ZP_02823448.1| ribonuclease Z [Escherichia coli O157:H7 str. EC508]
gi|195935648|ref|ZP_03081030.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4024]
gi|254794164|ref|YP_003079001.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14359]
gi|387883487|ref|YP_006313789.1| ribonuclease Z [Escherichia coli Xuzhou21]
gi|419046228|ref|ZP_13593165.1| ribonuclease Z [Escherichia coli DEC3A]
gi|419051987|ref|ZP_13598859.1| ribonuclease Z [Escherichia coli DEC3B]
gi|419070386|ref|ZP_13616009.1| ribonuclease Z [Escherichia coli DEC3E]
gi|419081473|ref|ZP_13626921.1| ribonuclease Z [Escherichia coli DEC4A]
gi|419110293|ref|ZP_13655351.1| ribonuclease Z [Escherichia coli DEC4F]
gi|420270323|ref|ZP_14772681.1| ribonuclease Z [Escherichia coli PA22]
gi|420276287|ref|ZP_14778571.1| ribonuclease Z [Escherichia coli PA40]
gi|420287589|ref|ZP_14789780.1| ribonuclease Z [Escherichia coli TW10246]
gi|420293229|ref|ZP_14795352.1| ribonuclease Z [Escherichia coli TW11039]
gi|420299101|ref|ZP_14801150.1| ribonuclease Z [Escherichia coli TW09109]
gi|420305007|ref|ZP_14807003.1| ribonuclease Z [Escherichia coli TW10119]
gi|420310505|ref|ZP_14812438.1| ribonuclease Z [Escherichia coli EC1738]
gi|420316085|ref|ZP_14817961.1| ribonuclease Z [Escherichia coli EC1734]
gi|421813240|ref|ZP_16248962.1| ribonuclease Z [Escherichia coli 8.0416]
gi|421819079|ref|ZP_16254577.1| ribonuclease Z [Escherichia coli 10.0821]
gi|421824904|ref|ZP_16260271.1| ribonuclease Z [Escherichia coli FRIK920]
gi|421831807|ref|ZP_16267094.1| ribonuclease Z [Escherichia coli PA7]
gi|423725868|ref|ZP_17699975.1| ribonuclease Z [Escherichia coli PA31]
gi|424078305|ref|ZP_17815308.1| ribonuclease Z [Escherichia coli FDA505]
gi|424084761|ref|ZP_17821271.1| ribonuclease Z [Escherichia coli FDA517]
gi|424091242|ref|ZP_17827187.1| ribonuclease Z [Escherichia coli FRIK1996]
gi|424097821|ref|ZP_17833156.1| ribonuclease Z [Escherichia coli FRIK1985]
gi|424104019|ref|ZP_17838817.1| ribonuclease Z [Escherichia coli FRIK1990]
gi|424110723|ref|ZP_17844980.1| ribonuclease Z [Escherichia coli 93-001]
gi|424116611|ref|ZP_17850474.1| ribonuclease Z [Escherichia coli PA3]
gi|424122826|ref|ZP_17856173.1| ribonuclease Z [Escherichia coli PA5]
gi|424141820|ref|ZP_17873732.1| ribonuclease Z [Escherichia coli PA14]
gi|424148321|ref|ZP_17879705.1| ribonuclease Z [Escherichia coli PA15]
gi|424154126|ref|ZP_17885100.1| ribonuclease Z [Escherichia coli PA24]
gi|424247949|ref|ZP_17890583.1| ribonuclease Z [Escherichia coli PA25]
gi|424324763|ref|ZP_17896506.1| ribonuclease Z [Escherichia coli PA28]
gi|424450512|ref|ZP_17902234.1| ribonuclease Z [Escherichia coli PA32]
gi|424463097|ref|ZP_17913571.1| ribonuclease Z [Escherichia coli PA39]
gi|424469455|ref|ZP_17919301.1| ribonuclease Z [Escherichia coli PA41]
gi|424475995|ref|ZP_17925337.1| ribonuclease Z [Escherichia coli PA42]
gi|424481747|ref|ZP_17930745.1| ribonuclease Z [Escherichia coli TW07945]
gi|424487896|ref|ZP_17936483.1| ribonuclease Z [Escherichia coli TW09098]
gi|424494491|ref|ZP_17942259.1| ribonuclease Z [Escherichia coli TW09195]
gi|424501266|ref|ZP_17948189.1| ribonuclease Z [Escherichia coli EC4203]
gi|424507498|ref|ZP_17953927.1| ribonuclease Z [Escherichia coli EC4196]
gi|424514826|ref|ZP_17959538.1| ribonuclease Z [Escherichia coli TW14313]
gi|424521145|ref|ZP_17965287.1| ribonuclease Z [Escherichia coli TW14301]
gi|424527036|ref|ZP_17970761.1| ribonuclease Z [Escherichia coli EC4421]
gi|424533188|ref|ZP_17976547.1| ribonuclease Z [Escherichia coli EC4422]
gi|424539204|ref|ZP_17982172.1| ribonuclease Z [Escherichia coli EC4013]
gi|424545230|ref|ZP_17987675.1| ribonuclease Z [Escherichia coli EC4402]
gi|424551481|ref|ZP_17993364.1| ribonuclease Z [Escherichia coli EC4439]
gi|424557666|ref|ZP_17999102.1| ribonuclease Z [Escherichia coli EC4436]
gi|424564013|ref|ZP_18005032.1| ribonuclease Z [Escherichia coli EC4437]
gi|424582144|ref|ZP_18021812.1| ribonuclease Z [Escherichia coli EC1863]
gi|425098863|ref|ZP_18501614.1| ribonuclease Z [Escherichia coli 3.4870]
gi|425104992|ref|ZP_18507321.1| ribonuclease Z [Escherichia coli 5.2239]
gi|425126852|ref|ZP_18528047.1| ribonuclease Z [Escherichia coli 8.0586]
gi|425132612|ref|ZP_18533475.1| ribonuclease Z [Escherichia coli 8.2524]
gi|425139078|ref|ZP_18539483.1| ribonuclease Z [Escherichia coli 10.0833]
gi|425150983|ref|ZP_18550616.1| ribonuclease Z [Escherichia coli 88.0221]
gi|425156867|ref|ZP_18556147.1| ribonuclease Z [Escherichia coli PA34]
gi|425163303|ref|ZP_18562198.1| ribonuclease Z [Escherichia coli FDA506]
gi|425169036|ref|ZP_18567520.1| ribonuclease Z [Escherichia coli FDA507]
gi|425175103|ref|ZP_18573232.1| ribonuclease Z [Escherichia coli FDA504]
gi|425181135|ref|ZP_18578841.1| ribonuclease Z [Escherichia coli FRIK1999]
gi|425187399|ref|ZP_18584682.1| ribonuclease Z [Escherichia coli FRIK1997]
gi|425194169|ref|ZP_18590952.1| ribonuclease Z [Escherichia coli NE1487]
gi|425200604|ref|ZP_18596834.1| ribonuclease Z [Escherichia coli NE037]
gi|425207026|ref|ZP_18602838.1| ribonuclease Z [Escherichia coli FRIK2001]
gi|425212789|ref|ZP_18608199.1| ribonuclease Z [Escherichia coli PA4]
gi|425218909|ref|ZP_18613886.1| ribonuclease Z [Escherichia coli PA23]
gi|425225461|ref|ZP_18619938.1| ribonuclease Z [Escherichia coli PA49]
gi|425231725|ref|ZP_18625774.1| ribonuclease Z [Escherichia coli PA45]
gi|425237643|ref|ZP_18631372.1| ribonuclease Z [Escherichia coli TT12B]
gi|425243860|ref|ZP_18637180.1| ribonuclease Z [Escherichia coli MA6]
gi|425255843|ref|ZP_18648378.1| ribonuclease Z [Escherichia coli CB7326]
gi|425295537|ref|ZP_18685754.1| ribonuclease Z [Escherichia coli PA38]
gi|425312201|ref|ZP_18701402.1| ribonuclease Z [Escherichia coli EC1735]
gi|425318149|ref|ZP_18706958.1| ribonuclease Z [Escherichia coli EC1736]
gi|425324250|ref|ZP_18712639.1| ribonuclease Z [Escherichia coli EC1737]
gi|425330532|ref|ZP_18718420.1| ribonuclease Z [Escherichia coli EC1846]
gi|425336696|ref|ZP_18724102.1| ribonuclease Z [Escherichia coli EC1847]
gi|425343103|ref|ZP_18730020.1| ribonuclease Z [Escherichia coli EC1848]
gi|425355200|ref|ZP_18741290.1| ribonuclease Z [Escherichia coli EC1850]
gi|425361160|ref|ZP_18746833.1| ribonuclease Z [Escherichia coli EC1856]
gi|425367334|ref|ZP_18752529.1| ribonuclease Z [Escherichia coli EC1862]
gi|425373708|ref|ZP_18758373.1| ribonuclease Z [Escherichia coli EC1864]
gi|425386555|ref|ZP_18770134.1| ribonuclease Z [Escherichia coli EC1866]
gi|425393277|ref|ZP_18776406.1| ribonuclease Z [Escherichia coli EC1868]
gi|425399373|ref|ZP_18782102.1| ribonuclease Z [Escherichia coli EC1869]
gi|425405454|ref|ZP_18787709.1| ribonuclease Z [Escherichia coli EC1870]
gi|425411856|ref|ZP_18793647.1| ribonuclease Z [Escherichia coli NE098]
gi|425418189|ref|ZP_18799482.1| ribonuclease Z [Escherichia coli FRIK523]
gi|425429519|ref|ZP_18810144.1| ribonuclease Z [Escherichia coli 0.1304]
gi|428947888|ref|ZP_19020194.1| ribonuclease Z [Escherichia coli 88.1467]
gi|428953987|ref|ZP_19025802.1| ribonuclease Z [Escherichia coli 88.1042]
gi|428959924|ref|ZP_19031258.1| ribonuclease Z [Escherichia coli 89.0511]
gi|428966493|ref|ZP_19037271.1| ribonuclease Z [Escherichia coli 90.0091]
gi|428972367|ref|ZP_19042729.1| ribonuclease Z [Escherichia coli 90.0039]
gi|428978806|ref|ZP_19048649.1| ribonuclease Z [Escherichia coli 90.2281]
gi|428984677|ref|ZP_19054088.1| ribonuclease Z [Escherichia coli 93.0055]
gi|428990747|ref|ZP_19059753.1| ribonuclease Z [Escherichia coli 93.0056]
gi|428996548|ref|ZP_19065176.1| ribonuclease Z [Escherichia coli 94.0618]
gi|429002787|ref|ZP_19070948.1| ribonuclease Z [Escherichia coli 95.0183]
gi|429008928|ref|ZP_19076471.1| ribonuclease Z [Escherichia coli 95.1288]
gi|429015373|ref|ZP_19082293.1| ribonuclease Z [Escherichia coli 95.0943]
gi|429021329|ref|ZP_19087867.1| ribonuclease Z [Escherichia coli 96.0428]
gi|429027335|ref|ZP_19093368.1| ribonuclease Z [Escherichia coli 96.0427]
gi|429033542|ref|ZP_19099084.1| ribonuclease Z [Escherichia coli 96.0939]
gi|429039642|ref|ZP_19104774.1| ribonuclease Z [Escherichia coli 96.0932]
gi|429045553|ref|ZP_19110283.1| ribonuclease Z [Escherichia coli 96.0107]
gi|429050946|ref|ZP_19115523.1| ribonuclease Z [Escherichia coli 97.0003]
gi|429056282|ref|ZP_19120628.1| ribonuclease Z [Escherichia coli 97.1742]
gi|429061822|ref|ZP_19125859.1| ribonuclease Z [Escherichia coli 97.0007]
gi|429068123|ref|ZP_19131607.1| ribonuclease Z [Escherichia coli 99.0672]
gi|429074030|ref|ZP_19137293.1| ribonuclease Z [Escherichia coli 99.0678]
gi|429079227|ref|ZP_19142373.1| ribonuclease Z [Escherichia coli 99.0713]
gi|429827228|ref|ZP_19358304.1| ribonuclease Z [Escherichia coli 96.0109]
gi|429833556|ref|ZP_19363949.1| ribonuclease Z [Escherichia coli 97.0010]
gi|444925813|ref|ZP_21245128.1| ribonuclease Z [Escherichia coli 09BKT078844]
gi|444931524|ref|ZP_21250578.1| ribonuclease Z [Escherichia coli 99.0814]
gi|444936931|ref|ZP_21255723.1| ribonuclease Z [Escherichia coli 99.0815]
gi|444942559|ref|ZP_21261092.1| ribonuclease Z [Escherichia coli 99.0816]
gi|444948107|ref|ZP_21266428.1| ribonuclease Z [Escherichia coli 99.0839]
gi|444953628|ref|ZP_21271737.1| ribonuclease Z [Escherichia coli 99.0848]
gi|444964205|ref|ZP_21281835.1| ribonuclease Z [Escherichia coli 99.1775]
gi|444970249|ref|ZP_21287625.1| ribonuclease Z [Escherichia coli 99.1793]
gi|444975509|ref|ZP_21292652.1| ribonuclease Z [Escherichia coli 99.1805]
gi|444980977|ref|ZP_21297896.1| ribonuclease Z [Escherichia coli ATCC 700728]
gi|444986331|ref|ZP_21303123.1| ribonuclease Z [Escherichia coli PA11]
gi|444991628|ref|ZP_21308283.1| ribonuclease Z [Escherichia coli PA19]
gi|444996940|ref|ZP_21313450.1| ribonuclease Z [Escherichia coli PA13]
gi|445002495|ref|ZP_21318894.1| ribonuclease Z [Escherichia coli PA2]
gi|445007994|ref|ZP_21324246.1| ribonuclease Z [Escherichia coli PA47]
gi|445024411|ref|ZP_21340245.1| ribonuclease Z [Escherichia coli 7.1982]
gi|445029682|ref|ZP_21345370.1| ribonuclease Z [Escherichia coli 99.1781]
gi|445035148|ref|ZP_21350689.1| ribonuclease Z [Escherichia coli 99.1762]
gi|445040773|ref|ZP_21356161.1| ribonuclease Z [Escherichia coli PA35]
gi|445045967|ref|ZP_21361231.1| ribonuclease Z [Escherichia coli 3.4880]
gi|445057299|ref|ZP_21372169.1| ribonuclease Z [Escherichia coli 99.0670]
gi|41017568|sp|Q8XCZ0.2|RBN_ECO57 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|189378925|gb|EDU97341.1| ribonuclease Z [Escherichia coli O157:H7 str. EC508]
gi|254593564|gb|ACT72925.1| RNase BN [Escherichia coli O157:H7 str. TW14359]
gi|377893058|gb|EHU57497.1| ribonuclease Z [Escherichia coli DEC3A]
gi|377893672|gb|EHU58106.1| ribonuclease Z [Escherichia coli DEC3B]
gi|377912216|gb|EHU76379.1| ribonuclease Z [Escherichia coli DEC3E]
gi|377926103|gb|EHU90038.1| ribonuclease Z [Escherichia coli DEC4A]
gi|377957175|gb|EHV20711.1| ribonuclease Z [Escherichia coli DEC4F]
gi|386796945|gb|AFJ29979.1| ribonuclease Z [Escherichia coli Xuzhou21]
gi|390641651|gb|EIN21075.1| ribonuclease Z [Escherichia coli FRIK1996]
gi|390643242|gb|EIN22605.1| ribonuclease Z [Escherichia coli FDA517]
gi|390644024|gb|EIN23324.1| ribonuclease Z [Escherichia coli FDA505]
gi|390660584|gb|EIN38282.1| ribonuclease Z [Escherichia coli 93-001]
gi|390662254|gb|EIN39871.1| ribonuclease Z [Escherichia coli FRIK1985]
gi|390663990|gb|EIN41460.1| ribonuclease Z [Escherichia coli FRIK1990]
gi|390677704|gb|EIN53714.1| ribonuclease Z [Escherichia coli PA3]
gi|390680935|gb|EIN56746.1| ribonuclease Z [Escherichia coli PA5]
gi|390700524|gb|EIN74825.1| ribonuclease Z [Escherichia coli PA15]
gi|390701517|gb|EIN75740.1| ribonuclease Z [Escherichia coli PA14]
gi|390713835|gb|EIN86749.1| ribonuclease Z [Escherichia coli PA22]
gi|390722949|gb|EIN95574.1| ribonuclease Z [Escherichia coli PA25]
gi|390724396|gb|EIN96953.1| ribonuclease Z [Escherichia coli PA24]
gi|390727790|gb|EIO00181.1| ribonuclease Z [Escherichia coli PA28]
gi|390742751|gb|EIO13746.1| ribonuclease Z [Escherichia coli PA31]
gi|390742921|gb|EIO13909.1| ribonuclease Z [Escherichia coli PA32]
gi|390757697|gb|EIO27167.1| ribonuclease Z [Escherichia coli PA40]
gi|390767901|gb|EIO36967.1| ribonuclease Z [Escherichia coli PA41]
gi|390768965|gb|EIO37936.1| ribonuclease Z [Escherichia coli PA39]
gi|390769277|gb|EIO38212.1| ribonuclease Z [Escherichia coli PA42]
gi|390790346|gb|EIO57774.1| ribonuclease Z [Escherichia coli TW10246]
gi|390790880|gb|EIO58276.1| ribonuclease Z [Escherichia coli TW07945]
gi|390797315|gb|EIO64571.1| ribonuclease Z [Escherichia coli TW11039]
gi|390806426|gb|EIO73338.1| ribonuclease Z [Escherichia coli TW09098]
gi|390806796|gb|EIO73698.1| ribonuclease Z [Escherichia coli TW09109]
gi|390816029|gb|EIO82541.1| ribonuclease Z [Escherichia coli TW10119]
gi|390826076|gb|EIO91938.1| ribonuclease Z [Escherichia coli EC4203]
gi|390830711|gb|EIO96216.1| ribonuclease Z [Escherichia coli TW09195]
gi|390831412|gb|EIO96789.1| ribonuclease Z [Escherichia coli EC4196]
gi|390846028|gb|EIP09641.1| ribonuclease Z [Escherichia coli TW14301]
gi|390847052|gb|EIP10609.1| ribonuclease Z [Escherichia coli TW14313]
gi|390850435|gb|EIP13810.1| ribonuclease Z [Escherichia coli EC4421]
gi|390861113|gb|EIP23389.1| ribonuclease Z [Escherichia coli EC4422]
gi|390865661|gb|EIP27661.1| ribonuclease Z [Escherichia coli EC4013]
gi|390870929|gb|EIP32388.1| ribonuclease Z [Escherichia coli EC4402]
gi|390878801|gb|EIP39618.1| ribonuclease Z [Escherichia coli EC4439]
gi|390883810|gb|EIP44205.1| ribonuclease Z [Escherichia coli EC4436]
gi|390893762|gb|EIP53301.1| ribonuclease Z [Escherichia coli EC4437]
gi|390899784|gb|EIP59020.1| ribonuclease Z [Escherichia coli EC1738]
gi|390908075|gb|EIP66916.1| ribonuclease Z [Escherichia coli EC1734]
gi|390919378|gb|EIP77731.1| ribonuclease Z [Escherichia coli EC1863]
gi|408064179|gb|EKG98661.1| ribonuclease Z [Escherichia coli PA7]
gi|408067956|gb|EKH02384.1| ribonuclease Z [Escherichia coli FRIK920]
gi|408070946|gb|EKH05301.1| ribonuclease Z [Escherichia coli PA34]
gi|408078891|gb|EKH13019.1| ribonuclease Z [Escherichia coli FDA506]
gi|408082717|gb|EKH16677.1| ribonuclease Z [Escherichia coli FDA507]
gi|408091112|gb|EKH24346.1| ribonuclease Z [Escherichia coli FDA504]
gi|408097160|gb|EKH30059.1| ribonuclease Z [Escherichia coli FRIK1999]
gi|408104281|gb|EKH36603.1| ribonuclease Z [Escherichia coli FRIK1997]
gi|408108510|gb|EKH40513.1| ribonuclease Z [Escherichia coli NE1487]
gi|408115146|gb|EKH46612.1| ribonuclease Z [Escherichia coli NE037]
gi|408121343|gb|EKH52304.1| ribonuclease Z [Escherichia coli FRIK2001]
gi|408127329|gb|EKH57819.1| ribonuclease Z [Escherichia coli PA4]
gi|408137722|gb|EKH67417.1| ribonuclease Z [Escherichia coli PA23]
gi|408139864|gb|EKH69456.1| ribonuclease Z [Escherichia coli PA49]
gi|408146126|gb|EKH75269.1| ribonuclease Z [Escherichia coli PA45]
gi|408155192|gb|EKH83518.1| ribonuclease Z [Escherichia coli TT12B]
gi|408160139|gb|EKH88183.1| ribonuclease Z [Escherichia coli MA6]
gi|408173616|gb|EKI00636.1| ribonuclease Z [Escherichia coli CB7326]
gi|408217552|gb|EKI41794.1| ribonuclease Z [Escherichia coli PA38]
gi|408227534|gb|EKI51120.1| ribonuclease Z [Escherichia coli EC1735]
gi|408238552|gb|EKI61346.1| ribonuclease Z [Escherichia coli EC1736]
gi|408242962|gb|EKI65512.1| ribonuclease Z [Escherichia coli EC1737]
gi|408247193|gb|EKI69410.1| ribonuclease Z [Escherichia coli EC1846]
gi|408256446|gb|EKI77825.1| ribonuclease Z [Escherichia coli EC1847]
gi|408259378|gb|EKI80565.1| ribonuclease Z [Escherichia coli EC1848]
gi|408275134|gb|EKI95116.1| ribonuclease Z [Escherichia coli EC1850]
gi|408277356|gb|EKI97166.1| ribonuclease Z [Escherichia coli EC1856]
gi|408286911|gb|EKJ05816.1| ribonuclease Z [Escherichia coli EC1862]
gi|408291177|gb|EKJ09814.1| ribonuclease Z [Escherichia coli EC1864]
gi|408308096|gb|EKJ25373.1| ribonuclease Z [Escherichia coli EC1866]
gi|408308237|gb|EKJ25513.1| ribonuclease Z [Escherichia coli EC1868]
gi|408319320|gb|EKJ35465.1| ribonuclease Z [Escherichia coli EC1869]
gi|408326021|gb|EKJ41854.1| ribonuclease Z [Escherichia coli EC1870]
gi|408326904|gb|EKJ42673.1| ribonuclease Z [Escherichia coli NE098]
gi|408336684|gb|EKJ51438.1| ribonuclease Z [Escherichia coli FRIK523]
gi|408346260|gb|EKJ60556.1| ribonuclease Z [Escherichia coli 0.1304]
gi|408550167|gb|EKK27512.1| ribonuclease Z [Escherichia coli 5.2239]
gi|408550574|gb|EKK27897.1| ribonuclease Z [Escherichia coli 3.4870]
gi|408569831|gb|EKK45816.1| ribonuclease Z [Escherichia coli 8.0586]
gi|408579548|gb|EKK55001.1| ribonuclease Z [Escherichia coli 10.0833]
gi|408581414|gb|EKK56758.1| ribonuclease Z [Escherichia coli 8.2524]
gi|408596500|gb|EKK70630.1| ribonuclease Z [Escherichia coli 88.0221]
gi|408601064|gb|EKK74880.1| ribonuclease Z [Escherichia coli 8.0416]
gi|408612836|gb|EKK86170.1| ribonuclease Z [Escherichia coli 10.0821]
gi|427205136|gb|EKV75396.1| ribonuclease Z [Escherichia coli 88.1042]
gi|427207513|gb|EKV77682.1| ribonuclease Z [Escherichia coli 89.0511]
gi|427208747|gb|EKV78836.1| ribonuclease Z [Escherichia coli 88.1467]
gi|427222310|gb|EKV91102.1| ribonuclease Z [Escherichia coli 90.0091]
gi|427224589|gb|EKV93294.1| ribonuclease Z [Escherichia coli 90.2281]
gi|427228109|gb|EKV96593.1| ribonuclease Z [Escherichia coli 90.0039]
gi|427242042|gb|EKW09460.1| ribonuclease Z [Escherichia coli 93.0056]
gi|427242643|gb|EKW10046.1| ribonuclease Z [Escherichia coli 93.0055]
gi|427246130|gb|EKW13350.1| ribonuclease Z [Escherichia coli 94.0618]
gi|427261785|gb|EKW27702.1| ribonuclease Z [Escherichia coli 95.0183]
gi|427262141|gb|EKW28046.1| ribonuclease Z [Escherichia coli 95.0943]
gi|427264864|gb|EKW30494.1| ribonuclease Z [Escherichia coli 95.1288]
gi|427276544|gb|EKW41113.1| ribonuclease Z [Escherichia coli 96.0428]
gi|427279738|gb|EKW44149.1| ribonuclease Z [Escherichia coli 96.0427]
gi|427283504|gb|EKW47712.1| ribonuclease Z [Escherichia coli 96.0939]
gi|427292008|gb|EKW55372.1| ribonuclease Z [Escherichia coli 96.0932]
gi|427299248|gb|EKW62223.1| ribonuclease Z [Escherichia coli 96.0107]
gi|427300550|gb|EKW63481.1| ribonuclease Z [Escherichia coli 97.0003]
gi|427313339|gb|EKW75459.1| ribonuclease Z [Escherichia coli 97.1742]
gi|427315765|gb|EKW77748.1| ribonuclease Z [Escherichia coli 97.0007]
gi|427319813|gb|EKW81616.1| ribonuclease Z [Escherichia coli 99.0672]
gi|427328375|gb|EKW89742.1| ribonuclease Z [Escherichia coli 99.0678]
gi|427329213|gb|EKW90544.1| ribonuclease Z [Escherichia coli 99.0713]
gi|429254023|gb|EKY38472.1| ribonuclease Z [Escherichia coli 96.0109]
gi|429255719|gb|EKY40014.1| ribonuclease Z [Escherichia coli 97.0010]
gi|444538412|gb|ELV18278.1| ribonuclease Z [Escherichia coli 99.0814]
gi|444539712|gb|ELV19421.1| ribonuclease Z [Escherichia coli 09BKT078844]
gi|444547615|gb|ELV26190.1| ribonuclease Z [Escherichia coli 99.0815]
gi|444557463|gb|ELV34798.1| ribonuclease Z [Escherichia coli 99.0839]
gi|444558581|gb|ELV35859.1| ribonuclease Z [Escherichia coli 99.0816]
gi|444563640|gb|ELV40629.1| ribonuclease Z [Escherichia coli 99.0848]
gi|444577735|gb|ELV53839.1| ribonuclease Z [Escherichia coli 99.1775]
gi|444579802|gb|ELV55779.1| ribonuclease Z [Escherichia coli 99.1793]
gi|444593505|gb|ELV68714.1| ribonuclease Z [Escherichia coli PA11]
gi|444593772|gb|ELV68979.1| ribonuclease Z [Escherichia coli ATCC 700728]
gi|444595628|gb|ELV70725.1| ribonuclease Z [Escherichia coli 99.1805]
gi|444607166|gb|ELV81752.1| ribonuclease Z [Escherichia coli PA13]
gi|444607497|gb|ELV82073.1| ribonuclease Z [Escherichia coli PA19]
gi|444616021|gb|ELV90197.1| ribonuclease Z [Escherichia coli PA2]
gi|444623894|gb|ELV97804.1| ribonuclease Z [Escherichia coli PA47]
gi|444638759|gb|ELW12086.1| ribonuclease Z [Escherichia coli 7.1982]
gi|444642017|gb|ELW15233.1| ribonuclease Z [Escherichia coli 99.1781]
gi|444645389|gb|ELW18458.1| ribonuclease Z [Escherichia coli 99.1762]
gi|444654598|gb|ELW27254.1| ribonuclease Z [Escherichia coli PA35]
gi|444660264|gb|ELW32637.1| ribonuclease Z [Escherichia coli 3.4880]
gi|444670048|gb|ELW41982.1| ribonuclease Z [Escherichia coli 99.0670]
Length = 305
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPSPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|90109091|pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 61 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 118
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 119 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPL 175
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 176 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 229
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 230 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 287
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 288 CRS-----IFPATE 296
>gi|409100110|ref|ZP_11220134.1| beta-lactamase domain-containing protein [Pedobacter agri PB92]
Length = 301
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLG 170
+A + +++FI+H H DH GL ++S L +KP IF P + E +E F+ +
Sbjct: 51 KAARIDYIFISHLHGDHYFGLIGLLSSLHLNGRVKPMQIFGPKPLLEILEIQFKYSDTTL 110
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY---LLRKKLKKQ------ 221
L V D D++V+ +H IP+ G++ RK +K++
Sbjct: 111 RYPLEFFPVEADESRQIFENQDLIVKTVVLNHRIPTTGFIFQQKNRQRKLIKEKTDDIPM 170
Query: 222 --YIHL-KGKQIE----KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALR-AKI 273
Y L KG +E ++ KS T L A+ DT + R + ++
Sbjct: 171 VYYTALKKGMDVELPTGEILKSEDYTTPADLPRSYAYCSDTK----FDERYFETIKGCDT 226
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L EATF+ D ++ A + HT + E AK + +L+ HFSSRY
Sbjct: 227 LYHEATFMHD--LLDRANETHHTTALQAGEIAKINGIRKLLIGHFSSRY 273
>gi|423483737|ref|ZP_17460427.1| ribonuclease Z [Bacillus cereus BAG6X1-2]
gi|401141288|gb|EJQ48843.1| ribonuclease Z [Bacillus cereus BAG6X1-2]
Length = 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALLV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V + + G +E N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGIVFE-DNEFSVETKRLSHGIECFGYRIVEKDIQGALLVDKLLGMGVKPGPIF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ + D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDAD 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI----RNKAVLLTHFSSRYH 323
+L+ EATF ++ +Q H + E A I K ++LTH SSRY
Sbjct: 228 VLVHEATFAAED------EQQAHDYFHSTTEQAARIALNANVKRLILTHISSRYQ 276
>gi|417718164|ref|ZP_12367063.1| ribonuclease Z [Shigella flexneri K-227]
gi|333016780|gb|EGK36108.1| ribonuclease Z [Shigella flexneri K-227]
Length = 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 38 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 95
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 96 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 152
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 153 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 206
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 207 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 264
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 265 CRS-----IFPATE 273
>gi|443627616|ref|ZP_21111998.1| putative Ribonuclease Z [Streptomyces viridochromogenes Tue57]
gi|443338882|gb|ELS53142.1| putative Ribonuclease Z [Streptomyces viridochromogenes Tue57]
Length = 301
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 27/222 (12%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + +TH H DH GL + L + P T P S ++ F+ R
Sbjct: 57 NRICVTHFHGDHSLGLAGVIQRINLDKVPHPVTAHYPRS----GQRFFDRLRYATAYRET 112
Query: 176 LDLVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKG 227
+D+ + VGE + + + + H + S GY + +L ++L I KG
Sbjct: 113 VDIEQMPVGEDGVLADTGGYTLEAARLSHPVESYGYRLVEPDGRRMLPERLAAHGI--KG 170
Query: 228 KQIEKLKKSGV-------EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATF 280
+ ++++ GV E+++I AF DT + + A A +L+ E+TF
Sbjct: 171 PDVGRIQRDGVLGGVSLEEVSEIRRGQRFAFVMDTR---LCDGVYALADGCDMLVIESTF 227
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L E IE A +HGH + A+ + ++LTHFS RY
Sbjct: 228 L--EKDIELAVEHGHLTAGQAARVARDCGVRHLVLTHFSQRY 267
>gi|161950082|ref|YP_404026.2| ribonuclease Z [Shigella dysenteriae Sd197]
gi|309785029|ref|ZP_07679662.1| ribonuclease Z [Shigella dysenteriae 1617]
gi|308927399|gb|EFP72873.1| ribonuclease Z [Shigella dysenteriae 1617]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|67480899|ref|XP_655799.1| metallo-beta-lactamase family protein [Entamoeba histolytica
HM-1:IMSS]
gi|56472958|gb|EAL50411.1| metallo-beta-lactamase family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449702403|gb|EMD43050.1| metallobeta-lactamase family protein [Entamoeba histolytica KU27]
Length = 267
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 42/249 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--- 164
R P I+ V ITH H DH G+ +V S I P I++ V+ +FE
Sbjct: 50 RVPLEKIRG--VIITHSHSDHASGIAGFVHSVVFGTSVELIIAAPKGIQKLVDVVFEYSG 107
Query: 165 --IHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQ 221
+ +++ ++L+ D + + ++N P H I G +
Sbjct: 108 DIVPKTVSYIDLSDDKIT-----HFSIKNTSFTSVPIPHHGSIKGHGIICQ--------- 153
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA-LRAKILITEATF 280
H Q +A TGDT +L ++ +L+ E TF
Sbjct: 154 -THYTNHQ----------------DTSIAITGDTNDSSLLAEYIVQQKIQLNMLLHECTF 196
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSA 340
D E+A + GH++ +I+ I+ ++ HFS+RY IE I + +++Q
Sbjct: 197 ASDLH--ENALKWGHSNPQLVIQTLLKIKPNKCIIHHFSTRYSIEAINKMAIEIQESSHV 254
Query: 341 KVVPLTEGF 349
+P+T+G
Sbjct: 255 PTLPVTDGL 263
>gi|293405737|ref|ZP_06649729.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298381420|ref|ZP_06991019.1| ribonuclease Z [Escherichia coli FVEC1302]
gi|291427945|gb|EFF00972.1| ribonuclease Z [Escherichia coli FVEC1412]
gi|298278862|gb|EFI20376.1| ribonuclease Z [Escherichia coli FVEC1302]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|419058020|ref|ZP_13604825.1| ribonuclease Z [Escherichia coli DEC3C]
gi|419063490|ref|ZP_13610218.1| ribonuclease Z [Escherichia coli DEC3D]
gi|419087251|ref|ZP_13632608.1| ribonuclease Z [Escherichia coli DEC4B]
gi|419093533|ref|ZP_13638818.1| ribonuclease Z [Escherichia coli DEC4C]
gi|419099056|ref|ZP_13644255.1| ribonuclease Z [Escherichia coli DEC4D]
gi|419104842|ref|ZP_13649971.1| ribonuclease Z [Escherichia coli DEC4E]
gi|424128966|ref|ZP_17861889.1| ribonuclease Z [Escherichia coli PA9]
gi|424135217|ref|ZP_17867703.1| ribonuclease Z [Escherichia coli PA10]
gi|424456707|ref|ZP_17907867.1| ribonuclease Z [Escherichia coli PA33]
gi|424570138|ref|ZP_18010722.1| ribonuclease Z [Escherichia coli EC4448]
gi|424576300|ref|ZP_18016402.1| ribonuclease Z [Escherichia coli EC1845]
gi|425110909|ref|ZP_18512844.1| ribonuclease Z [Escherichia coli 6.0172]
gi|425348904|ref|ZP_18735403.1| ribonuclease Z [Escherichia coli EC1849]
gi|444959114|ref|ZP_21276981.1| ribonuclease Z [Escherichia coli 99.1753]
gi|377904607|gb|EHU68885.1| ribonuclease Z [Escherichia coli DEC3C]
gi|377909965|gb|EHU74163.1| ribonuclease Z [Escherichia coli DEC3D]
gi|377930441|gb|EHU94324.1| ribonuclease Z [Escherichia coli DEC4B]
gi|377941975|gb|EHV05712.1| ribonuclease Z [Escherichia coli DEC4C]
gi|377942166|gb|EHV05902.1| ribonuclease Z [Escherichia coli DEC4D]
gi|377947325|gb|EHV10992.1| ribonuclease Z [Escherichia coli DEC4E]
gi|390683643|gb|EIN59303.1| ribonuclease Z [Escherichia coli PA9]
gi|390696914|gb|EIN71353.1| ribonuclease Z [Escherichia coli PA10]
gi|390745653|gb|EIO16442.1| ribonuclease Z [Escherichia coli PA33]
gi|390896033|gb|EIP55432.1| ribonuclease Z [Escherichia coli EC4448]
gi|390920373|gb|EIP78645.1| ribonuclease Z [Escherichia coli EC1845]
gi|408265771|gb|EKI86453.1| ribonuclease Z [Escherichia coli EC1849]
gi|408551159|gb|EKK28446.1| ribonuclease Z [Escherichia coli 6.0172]
gi|444573382|gb|ELV49760.1| ribonuclease Z [Escherichia coli 99.1753]
Length = 294
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 49 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 106
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 107 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPSPL 163
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 164 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 217
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 218 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 275
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 276 CRS-----IFPATE 284
>gi|343085364|ref|YP_004774659.1| ribonuclease Z [Cyclobacterium marinum DSM 745]
gi|342353898|gb|AEL26428.1| Ribonuclease Z [Cyclobacterium marinum DSM 745]
Length = 304
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 42/239 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
N +FI+H H DH GL + + L N K P P + ++++ I LN
Sbjct: 56 NHIFISHLHGDHYLGLMGLINTYSLNNRKLPLHLYGP---KGLDEIITIQLKYSAGTLNF 112
Query: 177 DLV---ALDVGET--YEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIE 231
L+ L G+ E+R D+ + F H IP G+ + KKQ +HL + +
Sbjct: 113 PLIFHPTLPQGKNKLVEIR-DLTIYSFPLEHRIPCTGFSF-----EEKKQRVHLNKEMMA 166
Query: 232 KLK---------KSGVEITDIILSPEVAFTGDTTSEFMLNPR----------NADAL--- 269
K + ++G ++ D + V + D E + +PR N D +
Sbjct: 167 KFRPEVEEIHTLQAGKDVMD--KTGNVLYKADDFCE-VSSPRKYSYCSDTVFNLDLIPHI 223
Query: 270 -RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
+ L E+TF++DE +H + II AK K +LL H+SSRY D+
Sbjct: 224 KGSDFLYHESTFMEDEKKRAKVTKHSTAKEAAII--AKEAEVKQLLLGHYSSRYSKLDL 280
>gi|300936832|ref|ZP_07151723.1| ribonuclease Z [Escherichia coli MS 21-1]
gi|300458075|gb|EFK21568.1| ribonuclease Z [Escherichia coli MS 21-1]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE ++ +R + + H + GY I L + LK
Sbjct: 118 IVEIGAGEIFDDGLRK---LTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVNV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|423612365|ref|ZP_17588226.1| ribonuclease Z [Bacillus cereus VD107]
gi|401245954|gb|EJR52306.1| ribonuclease Z [Bacillus cereus VD107]
Length = 307
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QYI 223
+V + N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGIVFDDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEIGVKPGPIFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
LK ++ +L+ V D I P+ + GDT A A +L+ EA
Sbjct: 177 RLKDGEVVELENGTVLSGKDFIGPPQKGRVITILGDTR---YCEASKELAQDADVLVHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA----VLLTHFSSRYH 323
TF ++ +Q H + + A I KA ++LTH SSRY
Sbjct: 234 TFAAED------EQQAHDYFHSTTKQAASIALKANVKRLILTHISSRYQ 276
>gi|423615521|ref|ZP_17591355.1| ribonuclease Z [Bacillus cereus VD115]
gi|401260058|gb|EJR66231.1| ribonuclease Z [Bacillus cereus VD115]
Length = 307
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTKLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------YI 223
+V + T N+ V K H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKKLSHGIECFGYRIVEKDIQGVLLVDKLLEMGVKPGPIFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAHDYFHSTSKQAASIALHANAKRLILTHISSRYQ 276
>gi|335433808|ref|ZP_08558624.1| ribonuclease Z [Halorhabdus tiamatea SARL4B]
gi|334898446|gb|EGM36554.1| ribonuclease Z [Halorhabdus tiamatea SARL4B]
Length = 331
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 92/229 (40%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+F++H H DH+ G+P + + + + P I P + +E L + L +
Sbjct: 79 IFVSHMHGDHVLGIPGLLQTMDFNDREDPLAIHAPHGTRSRLEDLISATGDRPSYPLRIT 138
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHL 225
V LD E YE VR +T H S GY + R+K + +
Sbjct: 139 QNGPGDVVLDA-EGYE------VRAVETEHRTQSIGYALVEDDRKGRFDREKAEHELGIS 191
Query: 226 KGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKI 273
G + KL VE + PE V +TGDT + + DA +
Sbjct: 192 PGPKYSKLHAGEAVEHDGRTIQPEEVVGPPRPGRTVVYTGDTRPVGAVLEASEDA---DL 248
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
LI +ATF DD E AQ+ GH+ E A K + LTH S+RY
Sbjct: 249 LIHDATFGDDRA--ERAQRTGHSTAREAGSLAAEADVKRLALTHISTRY 295
>gi|187775772|ref|ZP_02798010.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4196]
gi|188024686|ref|ZP_02773142.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4113]
gi|189010153|ref|ZP_02805133.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4076]
gi|189402100|ref|ZP_02780030.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4401]
gi|189403064|ref|ZP_02792904.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4486]
gi|189403973|ref|ZP_02786297.2| ribonuclease Z [Escherichia coli O157:H7 str. EC4501]
gi|189404940|ref|ZP_02812186.2| ribonuclease Z [Escherichia coli O157:H7 str. EC869]
gi|208807104|ref|ZP_03249441.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4206]
gi|208813769|ref|ZP_03255098.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4045]
gi|208820905|ref|ZP_03261225.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4042]
gi|209398284|ref|YP_002271681.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4115]
gi|217327312|ref|ZP_03443395.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14588]
gi|261223275|ref|ZP_05937556.1| ribonuclease Z [Escherichia coli O157:H7 str. FRIK2000]
gi|261259175|ref|ZP_05951708.1| ribonuclease Z [Escherichia coli O157:H7 str. FRIK966]
gi|416310945|ref|ZP_11656680.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1044]
gi|416318161|ref|ZP_11660871.1| Ribonuclease Z [Escherichia coli O157:H7 str. EC1212]
gi|416330613|ref|ZP_11669563.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1125]
gi|452971910|ref|ZP_21970137.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4009]
gi|12516619|gb|AAG57401.1|AE005459_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13362626|dbj|BAB36579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187771348|gb|EDU35192.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4196]
gi|188017272|gb|EDU55394.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4113]
gi|189001979|gb|EDU70965.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4076]
gi|189357705|gb|EDU76124.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4401]
gi|189362942|gb|EDU81361.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4486]
gi|189368351|gb|EDU86767.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4501]
gi|189372855|gb|EDU91271.1| ribonuclease Z [Escherichia coli O157:H7 str. EC869]
gi|208726905|gb|EDZ76506.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4206]
gi|208735046|gb|EDZ83733.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4045]
gi|208741028|gb|EDZ88710.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4042]
gi|209159684|gb|ACI37117.1| ribonuclease Z [Escherichia coli O157:H7 str. EC4115]
gi|209765220|gb|ACI80922.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765222|gb|ACI80923.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765226|gb|ACI80925.1| hypothetical protein ECs3156 [Escherichia coli]
gi|217319679|gb|EEC28104.1| ribonuclease Z [Escherichia coli O157:H7 str. TW14588]
gi|320192108|gb|EFW66753.1| Ribonuclease Z [Escherichia coli O157:H7 str. EC1212]
gi|326339622|gb|EGD63433.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1125]
gi|326344084|gb|EGD67845.1| Ribonuclease Z [Escherichia coli O157:H7 str. 1044]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPSPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|421727251|ref|ZP_16166415.1| ribonuclease Z [Klebsiella oxytoca M5al]
gi|410372042|gb|EKP26759.1| ribonuclease Z [Klebsiella oxytoca M5al]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 103/261 (39%), Gaps = 38/261 (14%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DH+ GLP + SR + N P T++ P +KE VE + S +
Sbjct: 58 NKIFITHLHGDHLFGLPGLLCSRSMQGNTLPLTLYGPKGLKEFVETALRLSGSW--TDYP 115
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY----------------------L 213
L +V ++ G ++ V + +H + GY I L
Sbjct: 116 LTIVEVEPGLVFD-EAGFRVTAWPLNHPVECYGYRIEQHDKPGTLDAARLIAEGVPPGPL 174
Query: 214 LRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKI 273
+ + + L G+ I+ + G ++A GDT P + R
Sbjct: 175 FHRLKQGLTVELDGRMIDGSRYLGPATP----GKKLAIFGDTAP----CPAALELARGVD 226
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ L+ M+ E A GH+ + A ++ THFSSRY E ++ + +
Sbjct: 227 VMVHEVTLEQAMA-EKANSRGHSTSQQTAALAHDADVGTLIATHFSSRYDAEGCQRLLAE 285
Query: 334 LQSKVSAKVVPLTEGFKSVYT 354
+ + V L E F VYT
Sbjct: 286 CREIFPSTV--LAEDFM-VYT 303
>gi|110806235|ref|YP_689755.1| ribonuclease Z [Shigella flexneri 5 str. 8401]
gi|191166492|ref|ZP_03028322.1| ribonuclease Z [Escherichia coli B7A]
gi|193062399|ref|ZP_03043494.1| ribonuclease Z [Escherichia coli E22]
gi|193068211|ref|ZP_03049175.1| ribonuclease Z [Escherichia coli E110019]
gi|194427129|ref|ZP_03059680.1| ribonuclease Z [Escherichia coli B171]
gi|194436086|ref|ZP_03068188.1| ribonuclease Z [Escherichia coli 101-1]
gi|301026902|ref|ZP_07190300.1| ribonuclease Z [Escherichia coli MS 196-1]
gi|331642906|ref|ZP_08344041.1| ribonuclease Z [Escherichia coli H736]
gi|331678218|ref|ZP_08378893.1| ribonuclease Z [Escherichia coli H591]
gi|344915295|ref|NP_708154.3| hypothetical protein SF2347 [Shigella flexneri 2a str. 301]
gi|386594950|ref|YP_006091350.1| ribonuclease BN [Escherichia coli DH1]
gi|416268750|ref|ZP_11642249.1| Ribonuclease Z [Shigella dysenteriae CDC 74-1112]
gi|416291873|ref|ZP_11650031.1| Ribonuclease Z [Shigella flexneri CDC 796-83]
gi|417122338|ref|ZP_11971596.1| ribonuclease BN [Escherichia coli 97.0246]
gi|417173640|ref|ZP_12003436.1| ribonuclease BN [Escherichia coli 3.2608]
gi|417182518|ref|ZP_12009075.1| ribonuclease BN [Escherichia coli 93.0624]
gi|417192032|ref|ZP_12014132.1| ribonuclease BN [Escherichia coli 4.0522]
gi|417208615|ref|ZP_12020346.1| ribonuclease BN [Escherichia coli JB1-95]
gi|417222548|ref|ZP_12025988.1| ribonuclease BN [Escherichia coli 96.154]
gi|417253822|ref|ZP_12045578.1| ribonuclease BN [Escherichia coli 4.0967]
gi|417259886|ref|ZP_12047409.1| ribonuclease BN [Escherichia coli 2.3916]
gi|417268852|ref|ZP_12056212.1| ribonuclease BN [Escherichia coli 3.3884]
gi|417272701|ref|ZP_12060050.1| ribonuclease BN [Escherichia coli 2.4168]
gi|417277558|ref|ZP_12064881.1| ribonuclease BN [Escherichia coli 3.2303]
gi|417291877|ref|ZP_12079158.1| ribonuclease BN [Escherichia coli B41]
gi|418957358|ref|ZP_13509282.1| ribonuclease Z [Escherichia coli J53]
gi|419950568|ref|ZP_14466780.1| ribonuclease Z [Escherichia coli CUMT8]
gi|422762224|ref|ZP_16815981.1| ribonuclease BN [Escherichia coli E1167]
gi|422766881|ref|ZP_16820608.1| ribonuclease BN [Escherichia coli E1520]
gi|422786888|ref|ZP_16839627.1| ribonuclease BN [Escherichia coli H489]
gi|424838636|ref|ZP_18263273.1| ribonuclease Z [Shigella flexneri 5a str. M90T]
gi|427805405|ref|ZP_18972472.1| hypothetical protein BN16_28251 [Escherichia coli chi7122]
gi|432377432|ref|ZP_19620423.1| ribonuclease Z [Escherichia coli KTE12]
gi|432534543|ref|ZP_19771518.1| ribonuclease Z [Escherichia coli KTE234]
gi|432661507|ref|ZP_19897151.1| ribonuclease Z [Escherichia coli KTE111]
gi|432705068|ref|ZP_19940168.1| ribonuclease Z [Escherichia coli KTE171]
gi|432809919|ref|ZP_20043812.1| ribonuclease Z [Escherichia coli KTE101]
gi|432968368|ref|ZP_20157283.1| ribonuclease Z [Escherichia coli KTE203]
gi|433135500|ref|ZP_20320844.1| ribonuclease Z [Escherichia coli KTE166]
gi|442592126|ref|ZP_21010106.1| Ribonuclease Z [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442598072|ref|ZP_21015846.1| Ribonuclease Z [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|24052705|gb|AAN43861.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30041954|gb|AAP17680.1| hypothetical protein S2481 [Shigella flexneri 2a str. 2457T]
gi|81246161|gb|ABB66869.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110615783|gb|ABF04450.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|190903452|gb|EDV63171.1| ribonuclease Z [Escherichia coli B7A]
gi|192932065|gb|EDV84664.1| ribonuclease Z [Escherichia coli E22]
gi|192958490|gb|EDV88929.1| ribonuclease Z [Escherichia coli E110019]
gi|194414750|gb|EDX31021.1| ribonuclease Z [Escherichia coli B171]
gi|194424814|gb|EDX40799.1| ribonuclease Z [Escherichia coli 101-1]
gi|260448639|gb|ACX39061.1| ribonuclease BN [Escherichia coli DH1]
gi|299879521|gb|EFI87732.1| ribonuclease Z [Escherichia coli MS 196-1]
gi|320174970|gb|EFW50085.1| Ribonuclease Z [Shigella dysenteriae CDC 74-1112]
gi|320187392|gb|EFW62084.1| Ribonuclease Z [Shigella flexneri CDC 796-83]
gi|323936667|gb|EGB32953.1| ribonuclease BN [Escherichia coli E1520]
gi|323961510|gb|EGB57119.1| ribonuclease BN [Escherichia coli H489]
gi|324117850|gb|EGC11749.1| ribonuclease BN [Escherichia coli E1167]
gi|331039704|gb|EGI11924.1| ribonuclease Z [Escherichia coli H736]
gi|331074678|gb|EGI45998.1| ribonuclease Z [Escherichia coli H591]
gi|383467688|gb|EID62709.1| ribonuclease Z [Shigella flexneri 5a str. M90T]
gi|384380005|gb|EIE37872.1| ribonuclease Z [Escherichia coli J53]
gi|386147618|gb|EIG94058.1| ribonuclease BN [Escherichia coli 97.0246]
gi|386176332|gb|EIH53811.1| ribonuclease BN [Escherichia coli 3.2608]
gi|386184371|gb|EIH67110.1| ribonuclease BN [Escherichia coli 93.0624]
gi|386190914|gb|EIH79660.1| ribonuclease BN [Escherichia coli 4.0522]
gi|386196576|gb|EIH90796.1| ribonuclease BN [Escherichia coli JB1-95]
gi|386202350|gb|EII01341.1| ribonuclease BN [Escherichia coli 96.154]
gi|386215749|gb|EII32241.1| ribonuclease BN [Escherichia coli 4.0967]
gi|386226609|gb|EII48911.1| ribonuclease BN [Escherichia coli 2.3916]
gi|386227657|gb|EII55013.1| ribonuclease BN [Escherichia coli 3.3884]
gi|386236401|gb|EII68377.1| ribonuclease BN [Escherichia coli 2.4168]
gi|386239626|gb|EII76553.1| ribonuclease BN [Escherichia coli 3.2303]
gi|386254199|gb|EIJ03889.1| ribonuclease BN [Escherichia coli B41]
gi|388416669|gb|EIL76550.1| ribonuclease Z [Escherichia coli CUMT8]
gi|412963587|emb|CCK47512.1| hypothetical protein BN16_28251 [Escherichia coli chi7122]
gi|430898731|gb|ELC20864.1| ribonuclease Z [Escherichia coli KTE12]
gi|431060179|gb|ELD69513.1| ribonuclease Z [Escherichia coli KTE234]
gi|431199244|gb|ELE97997.1| ribonuclease Z [Escherichia coli KTE111]
gi|431242554|gb|ELF36969.1| ribonuclease Z [Escherichia coli KTE171]
gi|431362687|gb|ELG49265.1| ribonuclease Z [Escherichia coli KTE101]
gi|431471485|gb|ELH51378.1| ribonuclease Z [Escherichia coli KTE203]
gi|431656178|gb|ELJ23199.1| ribonuclease Z [Escherichia coli KTE166]
gi|441608279|emb|CCP99132.1| Ribonuclease Z [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441653346|emb|CCQ01549.1| Ribonuclease Z [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|419932923|ref|ZP_14450198.1| ribonuclease Z [Escherichia coli 576-1]
gi|388414897|gb|EIL74840.1| ribonuclease Z [Escherichia coli 576-1]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S ++ L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--IDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTA------PCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|260062467|ref|YP_003195547.1| ribonuclease Z [Robiginitalea biformata HTCC2501]
gi|88784032|gb|EAR15202.1| ribonuclease Z [Robiginitalea biformata HTCC2501]
Length = 306
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 26/267 (9%)
Query: 86 VSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLK 145
+ GGH + E ++ R R + + +FI+H H DH GLP +A+ L +
Sbjct: 24 LETGGHLLLIDCGE-GTQMELRRYRIRLARIDHIFISHLHGDHFFGLPGLIATFQLLGRE 82
Query: 146 PPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI 204
P I+ P I+E + L + + L + ET + V +H I
Sbjct: 83 RPLHIYGPKGIREAISLLLRVGETRTRFALEFRELTSTQPETILANEKLEVSTLPLNHRI 142
Query: 205 PSQGYVIYL---LRK---------KLKKQYIHLKGKQIEKLKKSGVEITDIILS--PEVA 250
+ G++I +RK + K Y + + + G I + L+ P A
Sbjct: 143 YANGFLIQRKPGMRKLRAGVAESLGVDKAYYRKIKQGADGVAADGRTIPNHRLTEPPPPA 202
Query: 251 FTGDTTSEFMLNPRNADALRA-KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR 309
+ S+ P A +R L E+TFL+ E + A + GH S ++ A+ R
Sbjct: 203 ASYAYCSDTAYKPELAAWIRGVDTLYHESTFLETEARL--AAETGH---STALQAARIAR 257
Query: 310 NKAV---LLTHFSSRYH-IEDIRQAVL 332
+ V +L H+S+RY +E RQ L
Sbjct: 258 DAGVGRLILGHYSTRYRDLEAFRQEAL 284
>gi|315038180|ref|YP_004031748.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325956632|ref|YP_004292044.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|385817519|ref|YP_005853909.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
gi|312276313|gb|ADQ58953.1| ribonuclease Z [Lactobacillus amylovorus GRL 1112]
gi|325333197|gb|ADZ07105.1| ribonuclease Z [Lactobacillus acidophilus 30SC]
gi|327183457|gb|AEA31904.1| ribonuclease Z [Lactobacillus amylovorus GRL1118]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 106/249 (42%), Gaps = 39/249 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD+G R R + +FI+H H DHI GLP +++R ++ P TI+ P
Sbjct: 36 FDVGEATQHQILRTNIRLRKITKIFISHNHGDHIFGLPGLLSTRSFQGDVGPLTIYGPAG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF--KTHHVIPSQGYVIY 212
I++ V +I R+ +++ + +++ E + D R + + H IPS G+ +
Sbjct: 96 IEQFVRTSLQISRT----KVSYPIKFVELSEPGLICEDKGFRVYTDRLDHRIPSFGFRVV 151
Query: 213 -------LLRKKLKKQYI-------HLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
LL KL K I LK + L V L PE V
Sbjct: 152 EATHPGELLIDKLAKYNIPNGPILGQLKRGEQVTLADGTVLNGKDFLGPEKPGRIVTIIY 211
Query: 254 DTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
DT S + D A +L+ E+TF DE + A+ + H+ + + AK K +
Sbjct: 212 DTRSTPSIARLAKD---ADVLVHESTFAGDESKM--ARNYYHSTSVQAAKIAKQENVKKL 266
Query: 314 LLTHFSSRY 322
L H S+RY
Sbjct: 267 CLNHISARY 275
>gi|89099012|ref|ZP_01171891.1| ribonuclease Z [Bacillus sp. NRRL B-14911]
gi|89086142|gb|EAR65264.1| ribonuclease Z [Bacillus sp. NRRL B-14911]
Length = 308
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 40/260 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR + ++ P +K+ +E + + ++ L
Sbjct: 59 IFITHMHGDHIYGLPGLLSSRSFQGGETEVEVYGPKGLKDYIEISLSVSGTC--LKYPLK 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
++ G +E D V H IPS GY I +K K + Q +KLK++G
Sbjct: 117 IIEAIEGVIFE-DEDFKVEAKLLDHGIPSLGYRIM---EKDKPGTL-----QADKLKEAG 167
Query: 238 VEITDIILSPEVAFTGDTTSEFMLNPRN--------------------ADALR----AKI 273
V I + +LNP + A AL A +
Sbjct: 168 VMPGPIYRDIKNGIPAVLADGTVLNPADFLGPDIKGRVITILGDTRMCATALELARDADL 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
L+ EATF E ++ A+ + H+ + E AK K + LTH S+RY D A+L
Sbjct: 228 LVHEATFQAGEETM--ARDYYHSTTVQAAEIAKQANAKKLCLTHISARYERAD--WAMLT 283
Query: 334 LQSKVSAKVVPLTEGFKSVY 353
+++ + E FK +
Sbjct: 284 DEARTVFPDADIAEDFKEFH 303
>gi|81241825|gb|ABB62535.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|419938928|ref|ZP_14455733.1| ribonuclease Z [Escherichia coli 75]
gi|388409043|gb|EIL69369.1| ribonuclease Z [Escherichia coli 75]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|366053340|ref|ZP_09451062.1| ribonuclease Z [Lactobacillus suebicus KCTC 3549]
Length = 309
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P I E +I + +L
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSHQGGNGPLTIYGPKGI----EDFVKISLKVSETKLGYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ------- 221
L +++ + + ND V K H I GY I L KLK
Sbjct: 115 LKFVELTDGGVIFNDKTFTVSCEKLDHKIECFGYRIVEHDHPGELQVDKLKALNIPSGPI 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
Y LK GK + + ++ D I P+ V GDT N A A +L+
Sbjct: 175 YGQLKAGKTVNLEDGTSIDGKDYIGKPQQGRVVTILGDTRKS---NASVKLAENADVLVH 231
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E+TF E + A+ + H+ + + A+ K +LLTH S+RY
Sbjct: 232 ESTFAKGEGRM--ARNYYHSTSVQAAQVAQKAGAKKLLLTHISARY 275
>gi|339497678|ref|ZP_08658654.1| beta-lactamase superfamily hydrolase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 318
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 41/262 (15%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASR---GLYNLKPPTIFVP 152
FD+G I + + FI+H H DHI GLP +++SR G +P TI+ P
Sbjct: 36 FDVGEATQHQILKTTIRPRKVEKIFISHLHGDHIFGLPGFLSSRSFQGADKNEPLTIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVI 211
IK+ V+ + + + ++ VAL G ++ ++ P + H I + G+ +
Sbjct: 96 KGIKDFVQTALRVSET--RLSYPINYVALQEGVIFDDPTFQVIAAPMR--HRIETWGFRV 151
Query: 212 Y-------LLRKKLKKQYIHLKGKQIEKLKKS-GVEITDIILSPEVAFTGDTTS----EF 259
LL KL+ + I G +LK V + D + + G+T
Sbjct: 152 VEKDHPGELLVDKLRAENIP-SGPLYGRLKAGKTVTLPDGRTINGLDYIGETQKGRVVTL 210
Query: 260 MLNPRNAD-----ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+L+ R D A A +L+ E+T+ + + A+ H H+ A+ + ++
Sbjct: 211 ILDTRPNDNIALLAHHADVLVHESTYGASDEESKMARAHAHSTSINAANVARKAQVGKLV 270
Query: 315 LTHFSSRY-------HIEDIRQ 329
LTH S+RY I+D+R+
Sbjct: 271 LTHLSARYVGPLVKNLIQDVRK 292
>gi|187732862|ref|YP_001881094.1| ribonuclease Z [Shigella boydii CDC 3083-94]
gi|419176035|ref|ZP_13719851.1| ribonuclease Z [Escherichia coli DEC7B]
gi|254808664|sp|B2TW54.1|RBN_SHIB3 RecName: Full=Ribonuclease BN; Short=RNase BN; AltName:
Full=Ribonuclease Z homolog; Short=RNase Z homolog
gi|187429854|gb|ACD09128.1| ribonuclease Z [Shigella boydii CDC 3083-94]
gi|378032007|gb|EHV94589.1| ribonuclease Z [Escherichia coli DEC7B]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|301762826|ref|XP_002916832.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Ailuropoda
melanoleuca]
gi|281342229|gb|EFB17813.1| hypothetical protein PANDA_004947 [Ailuropoda melanoleuca]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 71/268 (26%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+FITH H DH GLP + + S + +P I+ P +++ + + E L + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTME----LSHTE 113
Query: 174 LNLDLVA-------------------------------------LDVGE-TYEMRND--I 193
L V LD E +Y + +D
Sbjct: 114 LVFPYVVHELVPTADQCPTEELKECMYVSKTDSHPKEGQGRTILLDSEENSYLLVDDEQF 173
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEI 240
VV+ F+ H IPS G+ + ++ K LK G KLK ++GV I
Sbjct: 174 VVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTI 233
Query: 241 T--DIILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294
+ D++ P ++ GD S + + A +LI EAT D +M + A++HG
Sbjct: 234 SPQDVLKKPIVGRKICILGDC-SGVVGDGGMKLCFEADLLIHEATLDDAQM--DKAKEHG 290
Query: 295 HTHLSEIIENAKWIRNKAVLLTHFSSRY 322
H+ AK + K ++LTHFS RY
Sbjct: 291 HSTPQMAAAFAKLCQAKRLVLTHFSQRY 318
>gi|291283514|ref|YP_003500332.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|331653711|ref|ZP_08354712.1| ribonuclease Z [Escherichia coli M718]
gi|416775553|ref|ZP_11874393.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|416787213|ref|ZP_11879301.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|416798869|ref|ZP_11884218.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|416809240|ref|ZP_11888903.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97]
gi|416819772|ref|ZP_11893462.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|416830676|ref|ZP_11898749.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|421774460|ref|ZP_16211072.1| ribonuclease Z [Escherichia coli AD30]
gi|209765218|gb|ACI80921.1| hypothetical protein ECs3156 [Escherichia coli]
gi|209765224|gb|ACI80924.1| hypothetical protein ECs3156 [Escherichia coli]
gi|290763387|gb|ADD57348.1| ribonuclease Z [Escherichia coli O55:H7 str. CB9615]
gi|320641098|gb|EFX10577.1| ribonuclease Z [Escherichia coli O157:H7 str. G5101]
gi|320646486|gb|EFX15405.1| ribonuclease Z [Escherichia coli O157:H- str. 493-89]
gi|320651583|gb|EFX19963.1| ribonuclease Z [Escherichia coli O157:H- str. H 2687]
gi|320657335|gb|EFX25137.1| ribonuclease Z [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663037|gb|EFX30354.1| ribonuclease Z [Escherichia coli O55:H7 str. USDA 5905]
gi|320667854|gb|EFX34762.1| ribonuclease Z [Escherichia coli O157:H7 str. LSU-61]
gi|331048560|gb|EGI20636.1| ribonuclease Z [Escherichia coli M718]
gi|408460208|gb|EKJ83987.1| ribonuclease Z [Escherichia coli AD30]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|293446609|ref|ZP_06663031.1| ribonuclease Z [Escherichia coli B088]
gi|332278582|ref|ZP_08390995.1| ribonuclease Z [Shigella sp. D9]
gi|386609647|ref|YP_006125133.1| binuclear zinc phosphodiesterase [Escherichia coli W]
gi|386700755|ref|YP_006164592.1| ribonuclease Z [Escherichia coli KO11FL]
gi|386710133|ref|YP_006173854.1| ribonuclease Z [Escherichia coli W]
gi|417155640|ref|ZP_11993769.1| ribonuclease BN [Escherichia coli 96.0497]
gi|417163613|ref|ZP_11998801.1| ribonuclease BN [Escherichia coli 99.0741]
gi|417863409|ref|ZP_12508457.1| hypothetical protein C22711_0342 [Escherichia coli O104:H4 str.
C227-11]
gi|419930966|ref|ZP_14448557.1| ribonuclease Z [Escherichia coli 541-1]
gi|422777554|ref|ZP_16831206.1| ribonuclease BN [Escherichia coli H120]
gi|422988385|ref|ZP_16979158.1| ribonuclease Z [Escherichia coli O104:H4 str. C227-11]
gi|422995276|ref|ZP_16986040.1| ribonuclease Z [Escherichia coli O104:H4 str. C236-11]
gi|423000350|ref|ZP_16991104.1| ribonuclease Z [Escherichia coli O104:H4 str. 09-7901]
gi|423004019|ref|ZP_16994765.1| ribonuclease Z [Escherichia coli O104:H4 str. 04-8351]
gi|423010593|ref|ZP_17001327.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-3677]
gi|423024987|ref|ZP_17015684.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4522]
gi|423038634|ref|ZP_17029308.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043753|ref|ZP_17034420.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C2]
gi|429719865|ref|ZP_19254796.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771748|ref|ZP_19303770.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02030]
gi|429785420|ref|ZP_19317317.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02092]
gi|429791310|ref|ZP_19323166.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02093]
gi|429798734|ref|ZP_19330534.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02318]
gi|429807247|ref|ZP_19338973.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02913]
gi|429817668|ref|ZP_19349308.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-04080]
gi|429822879|ref|ZP_19354476.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03943]
gi|429904257|ref|ZP_19370236.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908394|ref|ZP_19374358.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9941]
gi|429919296|ref|ZP_19385228.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5604]
gi|429941271|ref|ZP_19407145.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5603]
gi|429951551|ref|ZP_19417397.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0465]
gi|291323439|gb|EFE62867.1| ribonuclease Z [Escherichia coli B088]
gi|315061564|gb|ADT75891.1| binuclear zinc phosphodiesterase [Escherichia coli W]
gi|323944783|gb|EGB40849.1| ribonuclease BN [Escherichia coli H120]
gi|332100934|gb|EGJ04280.1| ribonuclease Z [Shigella sp. D9]
gi|341916698|gb|EGT66315.1| hypothetical protein C22711_0342 [Escherichia coli O104:H4 str.
C227-11]
gi|354862111|gb|EHF22549.1| ribonuclease Z [Escherichia coli O104:H4 str. C236-11]
gi|354867396|gb|EHF27818.1| ribonuclease Z [Escherichia coli O104:H4 str. C227-11]
gi|354869466|gb|EHF29876.1| ribonuclease Z [Escherichia coli O104:H4 str. 04-8351]
gi|354873321|gb|EHF33698.1| ribonuclease Z [Escherichia coli O104:H4 str. 09-7901]
gi|354880076|gb|EHF40412.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-3677]
gi|354893095|gb|EHF53299.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4522]
gi|354895232|gb|EHF55421.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354898867|gb|EHF59018.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-4632 C2]
gi|383392282|gb|AFH17240.1| ribonuclease Z [Escherichia coli KO11FL]
gi|383405825|gb|AFH12068.1| ribonuclease Z [Escherichia coli W]
gi|386168729|gb|EIH35245.1| ribonuclease BN [Escherichia coli 96.0497]
gi|386172838|gb|EIH44852.1| ribonuclease BN [Escherichia coli 99.0741]
gi|388399219|gb|EIL60021.1| ribonuclease Z [Escherichia coli 541-1]
gi|429348596|gb|EKY85357.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02092]
gi|429360005|gb|EKY96665.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02030]
gi|429361815|gb|EKY98467.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02093]
gi|429364977|gb|EKZ01594.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02318]
gi|429375708|gb|EKZ12241.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-02913]
gi|429380353|gb|EKZ16844.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-03943]
gi|429391884|gb|EKZ28286.1| ribonuclease Z [Escherichia coli O104:H4 str. 11-04080]
gi|429407035|gb|EKZ43289.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410783|gb|EKZ47004.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9450]
gi|429429438|gb|EKZ65507.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5604]
gi|429436331|gb|EKZ72347.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-5603]
gi|429448158|gb|EKZ84075.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451158|gb|EKZ87049.1| ribonuclease Z [Escherichia coli O104:H4 str. Ec11-9941]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGMLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|402586791|gb|EJW80728.1| metallo-beta-lactamase superfamily protein [Wuchereria bancrofti]
Length = 608
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 31/267 (11%)
Query: 99 ELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIK-- 156
+L+ F C ++ + VFITHGH DH G+ V R K + P +
Sbjct: 295 QLRTLFGDIVCEDLLLKLSAVFITHGHQDHYHGIFTIVQYRKELFAKRGMTYKPLIVAGG 354
Query: 157 EDVEKLF-EIHRSLGNVELNLDLVALD-VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
V K+F ++ RS GN ++ +V + + T + V IP + I +
Sbjct: 355 NHVLKVFRDVDRSFGNYTRDMHIVDISKILWTLSQQKGGPVEAVDLTGEIPPE---IIDI 411
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKIL 274
K I +K G TD+ + + F+GDT L DAL +L
Sbjct: 412 ESLGFKSVIAVKVNHART--AVGYIFTDL-KNQKFVFSGDTMPCEQLVNHGKDAL---VL 465
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY--------HIED 326
+ E+TF DDE + HA H+ + + + A + K ++LTHFS++Y +IE
Sbjct: 466 VHESTFGDDEEA--HALYKKHSTMKQAFDVAARMGAKNLVLTHFSAKYPKVPPLPDYIEK 523
Query: 327 IRQAVLKLQS--------KVSAKVVPL 345
+ + + K+SAK++P+
Sbjct: 524 AGNVTIAMDNMIVTPSDLKLSAKLIPV 550
>gi|335428981|ref|ZP_08555891.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|335430567|ref|ZP_08557457.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334887970|gb|EGM26285.1| ribonuclease Z [Haloplasma contractile SSD-17B]
gi|334891922|gb|EGM30168.1| ribonuclease Z [Haloplasma contractile SSD-17B]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 24/223 (10%)
Query: 112 RAIQQNFVFITHGHLDHIGGLPMYVAS-RGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170
RAI + + I+H H DHI GLP +A+ R +P TI P IK +E + +
Sbjct: 52 RAI--DVILISHLHGDHIYGLPGLLATIRNSERTEPITIIGPKGIKRMMESILVLAPY-- 107
Query: 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI 230
L+ +++ L+ + ++ ++ K +H P GY + R + K + K ++
Sbjct: 108 ---LSYEIIILENPSEFTYLENMKIKTEKLNHTAPCLGYSFNIERNR-KFDVVKAKENKV 163
Query: 231 EK-----LKKSGVEITD-IILSPEVAFTGDTTS---EFMLNPRNADAL-----RAKILIT 276
K L+ + D ++ +PE + ++ + R L + +LIT
Sbjct: 164 PKKIWSVLQNEEEALYDGVVYTPEQVLGKERKGLKLSYIADTRPTKTLPEFVKGSDLLIT 223
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
E T+ DDE +E A ++ H E E A +LLTHFS
Sbjct: 224 EGTYGDDE-DVEKAIRNKHLTFKEAAEIAVHGEVSELLLTHFS 265
>gi|170721023|ref|YP_001748711.1| ribonuclease Z [Pseudomonas putida W619]
gi|254808655|sp|B1J6H3.1|RNZ_PSEPW RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|169759026|gb|ACA72342.1| Ribonuclease Z [Pseudomonas putida W619]
Length = 321
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 30/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE--LNL 176
+FITH H DH GLP +AS G+ P V P+ D +L SL + L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTAPLDLVLPAALHDWVRL-----SLAASDSFLPF 112
Query: 177 DLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI----- 230
+L L V + E R+D + V + H +PS +V L + + L + I
Sbjct: 113 ELRLLAVEQLGEWRSDTLAVSTVQLSHRVPSVAFVFTELNPEPRLDVQRLDAEGIPRGPL 172
Query: 231 --EKLKKSGVEITDIIL-----------SPEVAFTGDTTSEFMLNPRNADALRAKILITE 277
E K VE +L + V GD + +L D +L+ E
Sbjct: 173 WGELAKGLTVEHAGRMLHGRDYLRASRPARRVIVCGDNDNPELLAEAAKD---VDVLVHE 229
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
ATF ++ GH+ + + A+ + ++LTHFS+RY
Sbjct: 230 ATFTQPIIA-RTGVSFGHSSAAAVARFAETAGVRNLVLTHFSARYQ 274
>gi|259046824|ref|ZP_05737225.1| ribonuclease Z [Granulicatella adiacens ATCC 49175]
gi|259036447|gb|EEW37702.1| ribonuclease Z [Granulicatella adiacens ATCC 49175]
Length = 314
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + T++ P IK ++ I S + L
Sbjct: 59 IFITHMHGDHIFGLPGLLTSRSFQGGEDDLTLYGPKGIKNFIDTT--IQASCSKLGYPLR 116
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQI 230
+V + G +E ++ V + H IPS G+ + + + Q LK G
Sbjct: 117 VVEFEKEGLLFEDKH-FKVEMKRLEHGIPSYGFRVTEKDQPGELQADRLKELGIPFGPLY 175
Query: 231 EKLKKS---GVEITDII-----LSPE-----VAFTGDT----TSEFMLNPRNADALRAKI 273
KLKK +E I+ +SP+ V GDT SE + A R+ +
Sbjct: 176 GKLKKGETITLEDGTIVNGQDYISPDIKGRVVTICGDTRKCEASEIL-------AYRSDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ EAT+ D+ + A +H H+ + E AK K +LLTH S+RY
Sbjct: 229 LVHEATYEGDKG--QQAYRHFHSTSLQAAEVAKNAEVKRLLLTHISARY 275
>gi|410977720|ref|XP_003995249.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Felis catus]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DH GLP + + S + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 167 ------------------RSLGNVELNLDL--------VALDVGE-TYEMRND--IVVRP 197
+ +V L + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPTEELKEFTHVNKTDSLPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK + K ++LTHFS RY
Sbjct: 295 QMAAAFAKLCQAKRLVLTHFSQRY 318
>gi|363896228|ref|ZP_09322782.1| ribonuclease Z [Oribacterium sp. ACB7]
gi|361961236|gb|EHL14454.1| ribonuclease Z [Oribacterium sp. ACB7]
Length = 301
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ TH H DHI GLP + S G KP + P +K V+ L I L +L+
Sbjct: 57 ICFTHYHADHISGLPGMLLSMGNAERTKPVRLIGPKGLKRVVDGLRMIAPEL---PFSLE 113
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIYLLRK-KLKKQYIHLKGKQIEKLKK 235
V + GE +++++ V+ FK H IP GY + + RK K + +G + +
Sbjct: 114 YVEI-TGEVEKLQSESFVIEAFKVQHSIPCYGYRLSIPRKGKFSVERAEEQGIPLRCWNR 172
Query: 236 ----SGVEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALR-AKILITEAT 279
VE I +P+ V + DT PR ++ + A + I E
Sbjct: 173 LQHGEAVEWEGRIFTPDMVMGEARKGISVVYCTDTRP----VPRISEMAKGADLFICEGM 228
Query: 280 FLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ +++ + +A++H H + E + K + LTH+S
Sbjct: 229 YGEEDKA-GNAKKHKHMTMEEAARLGREAMPKEMWLTHYS 267
>gi|417145985|ref|ZP_11986943.1| ribonuclease BN [Escherichia coli 1.2264]
gi|386163437|gb|EIH25232.1| ribonuclease BN [Escherichia coli 1.2264]
Length = 311
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGMLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|407037445|gb|EKE38649.1| metallo-beta-lactamase family protein [Entamoeba nuttalli P19]
Length = 267
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 42/249 (16%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFE--- 164
R P I+ V ITH H DH G+ +V S I P I++ V+ +FE
Sbjct: 50 RVPLDKIRG--VIITHSHSDHASGIAGFVHSVVFGTSVELIIAAPKGIQKLVDVVFEYSG 107
Query: 165 --IHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQ 221
+ +++ ++L+ D + + ++N P H I G +
Sbjct: 108 DIVPKTVSYIDLSDDKIT-----HFSIKNTSFTSVPIPHHGSIKGHGIICQ--------- 153
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA-LRAKILITEATF 280
H Q +A TGDT +L ++ +L+ E TF
Sbjct: 154 -THYNNHQ----------------DTSIAITGDTNDSSLLAEYIVQQKIQLNMLLHECTF 196
Query: 281 LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSA 340
D E+A + GH++ +I+ I+ ++ HFS+RY IE I + +++Q
Sbjct: 197 ASDLH--ENALKWGHSNPQLVIQTLLKIKPNKCIIHHFSTRYSIEAINKMAIEIQESSHV 254
Query: 341 KVVPLTEGF 349
+P+T+G
Sbjct: 255 PTLPVTDGL 263
>gi|401826600|ref|XP_003887393.1| ribonuclease Z-like protein [Encephalitozoon hellem ATCC 50504]
gi|395459911|gb|AFM98412.1| ribonuclease Z-like protein [Encephalitozoon hellem ATCC 50504]
Length = 594
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 27/206 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL-D 177
+F++H H DH+ G+ + G + +K IF P +I+ +E R+ +E N
Sbjct: 370 IFVSHSHADHVLGIASVLKKIG-HKIK---IFAPAAIRPFIESFGT--RNYEYIETNYAK 423
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKS- 236
++ G+T+++ +R + YLL+ + + I + G ++ S
Sbjct: 424 VMERRFGDTFQISKKAPLRTIDVEN---------YLLKFDIGFE-IGICG--VDHCSDSC 471
Query: 237 GVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHT 296
G+ + D + + ++GD + +L + ++I EATF D+ E A Q GH+
Sbjct: 472 GIRMKDGDIV--ITYSGDAKPSVLFGMM---SLNSDVMIHEATFALDQQ--ERAMQTGHS 524
Query: 297 HLSEIIENAKWIRNKAVLLTHFSSRY 322
+ +E + R+K +LLTHFS RY
Sbjct: 525 TIDGALEVFRVSRSKILLLTHFSQRY 550
>gi|332236758|ref|XP_003267566.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 1
[Nomascus leucogenys]
gi|332236760|ref|XP_003267567.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2
[Nomascus leucogenys]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI-HRSL--- 169
+FITH H DH GLP + + S + + +P I+ P +++ + + E+ H L
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVFH 117
Query: 170 -------------------GNVELNLD----------LVALDVGE-TYEMRND--IVVRP 197
G +N + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPAEELKGFAHVNRADSPPKEEQGRTILLDSEENSYLLFDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGIKLCFEADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK K ++LTHFS RY
Sbjct: 295 QMAATFAKLCHAKRLVLTHFSQRY 318
>gi|350578482|ref|XP_003121492.3| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Sus scrofa]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 73/269 (27%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
+FITH H DH GLP + + S + +P I+ P +++ + + E L + E
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPAGLRDFIWRTME----LSHTE 113
Query: 174 LNLDLVA-------------------------------------LDVGE-TYEMRND--I 193
L V LD E +Y + +D
Sbjct: 114 LVFPYVVHELVPTADQCPTEELKEFAHANKVDSPPKEGQGRTILLDSEENSYLLVDDEQF 173
Query: 194 VVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKKSGVEI---TDII 244
VV+ F+ H IPS G+ + ++ K LK G KLK +G+ + +I
Sbjct: 174 VVKAFRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLK-NGISVVLENGVI 232
Query: 245 LSPE-----------VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQH 293
+SP+ + GD S + + A +LI EAT D +M + A++H
Sbjct: 233 ISPQDVLKKPIVGRKICILGDC-SGVVDDGGVKLCFEADLLIHEATLDDTQM--DKAKEH 289
Query: 294 GHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
GH+ AK + K ++LTHFS RY
Sbjct: 290 GHSTPQMAATFAKLCQAKRLVLTHFSQRY 318
>gi|317495985|ref|ZP_07954347.1| ribonuclease Z [Gemella morbillorum M424]
gi|316913889|gb|EFV35373.1| ribonuclease Z [Gemella morbillorum M424]
Length = 306
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 45/254 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRG-LYNLKPP--TIFVPPSIKEDV-EKLFEIHRSLGNVEL 174
+FI+H H DHI GL +++SR L + K TI+ P I++ V + L H SL
Sbjct: 59 IFISHLHADHILGLIGFLSSRNFLLDSKESGVTIYGPVGIRQFVKQNLLFTHCSLN---F 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
++ V + +VV + +H I GY I +K EKLK
Sbjct: 116 DVKYVEFSSEQCIIDNKTVVVSTYPLNHNIECFGYKIIFKNQK--------GSLDAEKLK 167
Query: 235 KSGV---------EITDIILSPEVAFTGDTTSEFMLNPR-----------------NADA 268
K G+ + D + E + +SEF+ + N
Sbjct: 168 KLGIMPGPFYKNIKEQDSFVYNETTYN---SSEFLSEDKPKKEIAIIPDTRYFPQLNEFV 224
Query: 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIR 328
+ I+I+E T+LD E HA+++ H + +I K + LTH S+RY ++ +
Sbjct: 225 KNSDIIISECTYLD-EKDAHHARKNYHLSILDIENFITESTVKRLFLTHISARYDVDTEK 283
Query: 329 QAVLKLQSKVSAKV 342
V K+ + +
Sbjct: 284 SVVEKIDKTIKVSI 297
>gi|268315990|ref|YP_003289709.1| ribonuclease Z [Rhodothermus marinus DSM 4252]
gi|262333524|gb|ACY47321.1| ribonuclease Z [Rhodothermus marinus DSM 4252]
Length = 326
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GL +A+ + N P + V P E +E+L E L E +
Sbjct: 58 IFITHFHGDHFFGLFGLLATLAMLNRTEPLVVVGP---EGIERLIESMPGLSGAERGFPI 114
Query: 179 VALDVGETYE-----MRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG------ 227
+++ E +E D VV H + + G Y ++ + +H++
Sbjct: 115 RYVELAEGFEHAVVFETPDYVVTARPVEHRVFTVG---YRFEERTRPGRLHVERARALGV 171
Query: 228 ---KQIEKLKKSG-VEITDIILSPEVAF---TGDTTSEFMLNPRNADALR-----AKILI 275
+Q LK+ V++ D + PE T ++ + R + R +L
Sbjct: 172 TEPEQYRALKEGRPVQVGDRWVRPEEVLGPPIPGRTFAYLTDTRPCENGRLLAEGVDLLY 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
EATF + ++ A + GH E E A+ + +LL HFS+RY
Sbjct: 232 HEATFGEVHHAL--AVERGHATAREAAELAREAGARRLLLGHFSARY 276
>gi|348576621|ref|XP_003474085.1| PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Cavia
porcellus]
Length = 363
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 107/264 (40%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI-HRSLGNV 172
+FITH H DH GLP + + S + +P I+ P +++ + + E+ H L
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSSSVVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 117
Query: 173 ELNLDLV-ALDVGETYEMRND----------------------------------IVVRP 197
+ +LV D T E+R VV+
Sbjct: 118 YVVHELVPTADQCPTEELRESSHVAKADSAPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++G+ I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGITISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCSDADLLIHEATLDDAQM--DKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK R K ++LTHFS RY
Sbjct: 295 QMAATFAKLCRAKRLILTHFSQRY 318
>gi|256390641|ref|YP_003112205.1| beta-lactamase domain-containing protein [Catenulispora acidiphila
DSM 44928]
gi|256356867|gb|ACU70364.1| beta-lactamase domain protein [Catenulispora acidiphila DSM 44928]
Length = 330
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 33/225 (14%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPTIF-VPPSIKEDVEKL-FEI-HRSLGNVELNLD 177
+TH H DH GLP + L ++ + P +E E+L F H + +
Sbjct: 60 VTHFHGDHALGLPGILQRMSLDDVPHEVVCHFPGEHEEYFERLRFATPHHARAKIATQ-- 117
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV------IYLLRKKLKKQYIHLKGKQIE 231
A V +Y + + + H +P QGY + +L +KL I KG I
Sbjct: 118 -PACGV-RSYPLDGGLTLTVAPLDHGMPCQGYRLDEADGVRMLPRKLAAACI--KGPDIS 173
Query: 232 KLKKSG----VEITDI-ILSPEVAFTGDTTSEFMLNPR---NADALRAKI--LITEATFL 281
+L+ G V + D+ + P +F F+++ R A+ L A + L+ EATFL
Sbjct: 174 RLRAEGRLGDVRLEDVSVPRPGQSFA------FLMDTRRCPGAEQLAAGVDLLVVEATFL 227
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
D E E A Q GH + A + ++LTHFS RY +++
Sbjct: 228 DSEE--EQAGQFGHLTARQAARLAADAGVRELVLTHFSQRYPVDE 270
>gi|313890135|ref|ZP_07823770.1| ribonuclease Z [Streptococcus pseudoporcinus SPIN 20026]
gi|416852160|ref|ZP_11909305.1| ribonuclease Z [Streptococcus pseudoporcinus LQ 940-04]
gi|313121496|gb|EFR44600.1| ribonuclease Z [Streptococcus pseudoporcinus SPIN 20026]
gi|356739649|gb|EHI64881.1| ribonuclease Z [Streptococcus pseudoporcinus LQ 940-04]
Length = 310
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 37/257 (14%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP +++SR + T IF P
Sbjct: 36 FDCGEGTQRQILETTIKPRKIEKIFITHLHGDHIFGLPGFLSSRAFQASEEQTDIAIFGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNL-DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI 211
IK V+ + S +++ +L +G+ +E + V + H I GY +
Sbjct: 96 LGIKSFVQNSLSVSGSRLPYKIHYHELTEDKLGKIFET-DKFTVYAERLAHTIFCLGYRV 154
Query: 212 YL--LRKKLKKQYIHLKGKQIEKL---KKSGVEIT----------DIILSPE----VAFT 252
L L + + G L K+G ++T D I +P+ V
Sbjct: 155 VQKDLEGTLDAEALKEAGVPFGPLFGKIKNGQDVTLEDGRLIHAQDFISAPKKGKIVTIL 214
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
GDT D A +L+ E+T+ + I A+ HGH+ + + A+ K
Sbjct: 215 GDTRKSLASQRLAKD---ADVLVHESTYGKGDDKI--ARNHGHSTNIQAAQIARDAGVKR 269
Query: 313 VLLTHFSSRYHIEDIRQ 329
+LL H S+R+ D RQ
Sbjct: 270 LLLNHVSARFLGRDCRQ 286
>gi|432895286|ref|ZP_20107006.1| ribonuclease Z [Escherichia coli KTE165]
gi|431421653|gb|ELH03865.1| ribonuclease Z [Escherichia coli KTE165]
Length = 305
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 109/255 (42%), Gaps = 45/255 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPHGIREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+ + GE ++ +R V + H + GY I L + LK
Sbjct: 118 IAEISTGEIFDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + P +A GDT P +A AK +
Sbjct: 175 FQELKAGKTIMLDDGRQINGADYLAVPVPGKALAIFGDT------GPCDAALELAKGVDV 228
Query: 274 LITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVL 332
++ EAT +M++E A GH+ + A+ +++TH SSRY + + +
Sbjct: 229 MVHEATL---DMAMEAKANSRGHSSTRQAAALAREAGVGKLIITHVSSRYDDKGCQHLLR 285
Query: 333 KLQSKVSAKVVPLTE 347
+ +S + P TE
Sbjct: 286 ECRS-----IFPATE 295
>gi|427809963|ref|ZP_18977028.1| hypothetical protein BN17_15751 [Escherichia coli]
gi|412970142|emb|CCJ44785.1| hypothetical protein BN17_15751 [Escherichia coli]
Length = 311
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITME-SKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|308492249|ref|XP_003108315.1| CRE-HOE-1 protein [Caenorhabditis remanei]
gi|308249163|gb|EFO93115.1| CRE-HOE-1 protein [Caenorhabditis remanei]
Length = 831
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 36/275 (13%)
Query: 69 AAVVRKGIDLEGYTIEGVSIGGHETCVIIP-------ELKCAFDIGRCPTRAIQQNFVFI 121
+AV K ++ GY +E +E+ +++ ++K F C + + V +
Sbjct: 494 SAVPSKYRNVTGYLVEA----SNESALLLDVGEGTYGQMKAVFGEEGCKKLLVNLHCVLV 549
Query: 122 THGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHR-SLGNVELNLDL 178
TH H DH+ GL VA R +L+ P + +V K + + N+E L++
Sbjct: 550 THAHQDHMNGLYTIVARRKEAFESLRIPYRPLVLVCNRNVLKPLKTYSICFENIENLLEI 609
Query: 179 VALD---VGETYEMRNDIVVRP-FKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
V + + RP + H+ PS+ ++ + K K L E+LK
Sbjct: 610 VDISRHPLTPPGSPNGPPGKRPRLPSPHLPPSRD-ILDDMPKSFDKNVWKL-----EELK 663
Query: 235 KSGVEITDI-------ILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI 287
V T + + + F+GDT +L DA +L+ E+TF D
Sbjct: 664 AVQVHHTRMANGFVMRVAGKRIVFSGDTKPCDLLVAEGQDA---DVLVHESTFEDGHE-- 718
Query: 288 EHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
E A + H+ + + ++ K + K ++LTHFS+RY
Sbjct: 719 EDALRKRHSTMGQAVDVGKRMNAKNIILTHFSARY 753
>gi|154502856|ref|ZP_02039916.1| hypothetical protein RUMGNA_00676 [Ruminococcus gnavus ATCC 29149]
gi|336433529|ref|ZP_08613347.1| ribonuclease Z [Lachnospiraceae bacterium 2_1_58FAA]
gi|153796395|gb|EDN78815.1| ribonuclease Z [Ruminococcus gnavus ATCC 29149]
gi|336016144|gb|EGN45937.1| ribonuclease Z [Lachnospiraceae bacterium 2_1_58FAA]
Length = 301
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 108/226 (47%), Gaps = 36/226 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + K P + P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRKEPLTLIGP---KGLERVVSALRVIAP-ELPF 110
Query: 177 DLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYI---- 223
++ ++ +T+E+ N ++ F+ +H + GY + + R ++ K+Q I
Sbjct: 111 PIIYKEIEGAEQTFEL-NGYRLKAFRVNHNVLCYGYTMEIDRAGKFDVERAKEQEIPQKY 169
Query: 224 --HL-KGKQIEKLKKSGVEITDIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
HL KG+ IE ++G+ D++L P ++ +T DT T+ N +++D +
Sbjct: 170 WKHLQKGETIE--TENGILTPDMVLGPPRKGLKLTYTTDTRPTNSIRENAKDSD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
I E + + E + + A ++ H E AK + K + LTH+S
Sbjct: 223 FICEGMYGEKEKAAK-AVEYKHMTFYEAAHLAKDAQVKEMWLTHYS 267
>gi|448315721|ref|ZP_21505361.1| ribonuclease Z [Natronococcus jeotgali DSM 18795]
gi|445610856|gb|ELY64623.1| ribonuclease Z [Natronococcus jeotgali DSM 18795]
Length = 308
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 47/244 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGN---VEL 174
+F+TH H DH+ GLP + + + + P I P + +++ L +H +LGN +
Sbjct: 57 IFVTHLHGDHVLGLPGLLQTMDFNDREDPLAIHAPRGTRRELKSL--VH-ALGNRPSFPV 113
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKG 227
+D V G+ ++ VR F T H S GY + R++ ++ + +
Sbjct: 114 RIDEVG--GGDVAYRADEYEVRAFATDHDTRSVGYALIEDDRKGRFDRERAEELGVPVGP 171
Query: 228 KQIEKLKKSGVEITD-IILSPE-----------VAFTGDTTSEFMLNPRNADALRA---- 271
K + VE+ D ++ PE + +TGDT A A+ A
Sbjct: 172 KFSQLHAGEPVELEDGTVVDPEQVVGDPRPGRSIVYTGDTRP-------VAAAIEAADDP 224
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY------HIE 325
+LI +ATF DD + A H+ S+ E A + + L H SSRY H+E
Sbjct: 225 DLLIHDATFADDRA--DRAAHTAHSTASQAAEIATRAGAERLALMHLSSRYAGDVSAHLE 282
Query: 326 DIRQ 329
+ R+
Sbjct: 283 EARE 286
>gi|448401320|ref|ZP_21571556.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
gi|445666583|gb|ELZ19242.1| ribonuclease Z [Haloterrigena limicola JCM 13563]
Length = 314
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 52/265 (19%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + +P I P
Sbjct: 35 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLETMAFNDRTEPLAIHTPHGT 94
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + G+ ++ VR F T H S GY +
Sbjct: 95 RRQLKSLVN---ALGNRPSFPVRINEVGDGDVAYRADEYEVRAFATDHDTRSVGYALVED 151
Query: 215 RKKLKKQYIHLK------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTGDT 255
+K + H + G + KL K VE+ D ++ PE + +TGDT
Sbjct: 152 DRKGRFDREHAEELGVPVGPKFSKLHKGESVELEDGTVVEPEQVVGEPRPGRSIVYTGDT 211
Query: 256 -----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310
T E P +LI +ATF DD + A H + E A
Sbjct: 212 RPTAATIEVADEP--------DLLIHDATFADD--MADRATDTAHATARQAAEIANRTGA 261
Query: 311 KAVLLTHFSSRY------HIEDIRQ 329
+ L H SSRY H+E R+
Sbjct: 262 DRLALMHISSRYAGYAGDHLEQARE 286
>gi|72161928|ref|YP_289585.1| ribonuclease Z [Thermobifida fusca YX]
gi|123629478|sp|Q47PQ7.1|RNZ_THEFY RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|71915660|gb|AAZ55562.1| RNAse Z [Thermobifida fusca YX]
Length = 318
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 43/252 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE----- 173
V +TH H DH GLP + + P P+ ++ + S + E
Sbjct: 59 VCVTHFHGDHSLGLPGVIQRIARDGVTHPVRVAYPAAGQEYWERLRYATSFVDTEVIEAQ 118
Query: 174 -LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLK 226
L D V + GE ++ V H IP+ GY I ++L +L + I +
Sbjct: 119 PLAGDEVVVS-GE-----DEFTVTALPLDHSIPTYGYRIAEPDRVHMLADRLAARGI--R 170
Query: 227 GKQIEKLKKSG---------VEITDI-ILSPEVAFTGDTTSEFMLNPRNAD-----ALRA 271
G + +LK G VE+ D ++ P F F+++ D A RA
Sbjct: 171 GPAVGRLKAEGFLIDAAGNRVELADYSVVRPGQVFA------FVMDTGVCDTAVRLAERA 224
Query: 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+L+ EATFL+ E + +H + +I +R ++LTHFS RY E+ + +
Sbjct: 225 DLLVIEATFLNAEAELAARYRHLTAGQAGMIAAQAGVRR--LVLTHFSERYGREEEDRFI 282
Query: 332 LKLQSKVSAKVV 343
+ + S ++V
Sbjct: 283 AEAAACFSGEIV 294
>gi|415885413|ref|ZP_11547341.1| ribonuclease Z [Bacillus methanolicus MGA3]
gi|387591082|gb|EIJ83401.1| ribonuclease Z [Bacillus methanolicus MGA3]
Length = 310
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 95/235 (40%), Gaps = 32/235 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DHI GLP ++SR + P + +++ I S+ L+ L
Sbjct: 59 IFITHLHGDHIYGLPGLLSSRSFQGGDTEVVLYGP---KGLKEFINISLSVSQTFLSYPL 115
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+++ E +D V H IPS GY I LL KL K Y
Sbjct: 116 KIVEIEEGVIFDDDQFTVEARLLDHGIPSYGYRIIEKDRPGTLLADKLIKAGIKPGPIYK 175
Query: 224 HLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
+K + L+ V L P VA GDT + +NAD +L+
Sbjct: 176 KIKNGESVILEDGTVLEAANFLGPAQKGRIVAILGDTRICENAVRLAKNAD-----LLVH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EATF E + A ++ H+ + E A K + LTH S+RY D + V
Sbjct: 231 EATFSKGEERL--AYEYFHSTTYQAAETAVKANVKKLCLTHISARYDRNDWLELV 283
>gi|294868284|ref|XP_002765461.1| Ribonuclease Z, putative [Perkinsus marinus ATCC 50983]
gi|239865504|gb|EEQ98178.1| Ribonuclease Z, putative [Perkinsus marinus ATCC 50983]
Length = 356
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 36/245 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-YNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ ITH H DH G+ + S + +P T++ P IK +E +F + +LN+
Sbjct: 80 ILITHLHGDHCYGIFGLLHSCCMGERTEPITVYGPQGIKTMIETVFALSGGWNGYDLNI- 138
Query: 178 LVALDVGETYEM---RNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGK 228
V LD + E D+ + H +P+ GY+ L L Q + +G
Sbjct: 139 -VELDPTQHTEFTISSGDVRIHAAPLKHRVPTLGYIFTEPDKPGALNASLAAQ-MGARGP 196
Query: 229 QIEKLKKS-GVEITD--IILSPEV---AFTGDTTSEFMLNPRNADAL----RAKILITEA 278
Q LK+ V ++D +I + EV G T + +++AL +LI E
Sbjct: 197 QFRDLKEGRDVTLSDGTLIRAAEVVGETAKGRTIAVLQDTCDSSEALPYLQGPDLLIHEC 256
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----------HIEDI 327
T+ D M E A GH+ + + A+ K + LTHFS RY + D+
Sbjct: 257 TY-HDAMR-EKAVDFGHSTAAMAGQFARLCGAKVLALTHFSPRYTDPDPDAEDSLSVGDL 314
Query: 328 RQAVL 332
RQ L
Sbjct: 315 RQEAL 319
>gi|71985808|ref|NP_001023109.1| Protein HOE-1, isoform a [Caenorhabditis elegans]
gi|42559555|sp|O44476.2|RNZ_CAEEL RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=CeELAC2;
AltName: Full=Homolog of ELAC2 protein 1; AltName:
Full=tRNA 3 endonuclease; AltName: Full=tRNase Z
gi|351060956|emb|CCD68705.1| Protein HOE-1, isoform a [Caenorhabditis elegans]
Length = 833
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 26/270 (9%)
Query: 69 AAVVRKGIDLEGYTIEGVSIGGHETCVIIP-------ELKCAFDIGRCPTRAIQQNFVFI 121
+AV K ++ GY +E + ++I +++ F C + N V I
Sbjct: 501 SAVPSKYRNVTGYLVEA----SENSAILIDVGEGTYGQMRAVFGEDGCKQLLVNLNCVLI 556
Query: 122 THGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHR-SLGNVELNLDL 178
TH H DH+ GL +A R +L P + +V K + + N+E L++
Sbjct: 557 THAHQDHMNGLYTIIARRKEAFESLGAPYRPLVLVCNRNVLKPMKTYSICFENIEHLLEI 616
Query: 179 VALD---VGETYEMRNDIVVRP-FKTHHVIPSQGYVIYLLRKKLKKQYI--HLKGKQIEK 232
V + + RP + H+ PS+ + + KK + LK Q+
Sbjct: 617 VDISRYPLTPPGSPGGPPGKRPRLPSPHLPPSRDVLQDMSSSFDKKAWKLDELKAVQVHH 676
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
+ + + + + F+GDT +L DA +L+ E+TF D + A +
Sbjct: 677 TRMANGFVMRVA-GKRIVFSGDTKPCDLLVEEGKDA---DVLVHESTFEDGHEA--DAMR 730
Query: 293 HGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
H+ + + ++ K + K ++LTHFS+RY
Sbjct: 731 KRHSTMGQAVDVGKRMNAKHIILTHFSARY 760
>gi|342889289|gb|EGU88444.1| hypothetical protein FOXB_01047 [Fusarium oxysporum Fo5176]
Length = 805
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 249 VAFTGDT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306
+A++GD + EF + A +L+ E TF DD +S HA++ GH+ + E +E A+
Sbjct: 686 IAYSGDCRPSDEFA-----QECEGAHLLVHECTFDDDMLS--HAKKKGHSTMGEALEIAR 738
Query: 307 WIRNKAVLLTHFSSRY 322
++ + LLTHFS RY
Sbjct: 739 KMKARRTLLTHFSQRY 754
>gi|148653605|ref|YP_001280698.1| ribonuclease Z [Psychrobacter sp. PRwf-1]
gi|148572689|gb|ABQ94748.1| RNAse Z [Psychrobacter sp. PRwf-1]
Length = 354
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 61/254 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL--NL 176
+ ITH H DH GLP +AS + P + P + + L + +S ++ L ++
Sbjct: 71 ICITHVHGDHCYGLPGLLASMAMSGRTAPLTLIAP---KAILTLIQAVQSTTDLYLPYDI 127
Query: 177 DLVALD--VGETYEMRNDIVVRPFKTH----------HVIPSQGYVIYLLRKKLKKQYIH 224
D VA++ V + N ++++ H H + S G+VI + + LK
Sbjct: 128 DFVAIEDKVCADQSIANPVILQLSAAHKLEIKIVKLSHRVASYGFVITQVVQSLKLN--- 184
Query: 225 LKGKQIEKLKKSGVEIT----------DIILSP-----------------EVAFTGDTTS 257
KLKK G+ T D++L +V GD +
Sbjct: 185 -----THKLKKQGIAATAAWGQLQAGQDVMLEDGRKLVSVEYTYRESQQLKVVVGGDNDT 239
Query: 258 EFMLNPRNADALR-AKILITEATFL----DDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
+L A++ A +LI EAT+ D MS HT I + A+ ++ A
Sbjct: 240 PELLQ----QAVQGANVLIHEATYTQSVRDKIMSRPDGFDPMHTTAKCIAQFAQAMQLPA 295
Query: 313 VLLTHFSSRYHIED 326
++LTHFS+RYH D
Sbjct: 296 LILTHFSARYHSYD 309
>gi|416898337|ref|ZP_11927901.1| ribonuclease Z [Escherichia coli STEC_7v]
gi|422780812|ref|ZP_16833597.1| ribonuclease BN [Escherichia coli TW10509]
gi|422799577|ref|ZP_16848076.1| ribonuclease BN [Escherichia coli M863]
gi|323967712|gb|EGB63124.1| ribonuclease BN [Escherichia coli M863]
gi|323977530|gb|EGB72616.1| ribonuclease BN [Escherichia coli TW10509]
gi|327252541|gb|EGE64200.1| ribonuclease Z [Escherichia coli STEC_7v]
Length = 305
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P ++E VE I S + L+
Sbjct: 60 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGLREFVETALRISGSW--TDYPLE 117
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE + +R V + H + GY I K L Q + G +
Sbjct: 118 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 174
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P +A AK +
Sbjct: 175 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 229 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 286
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 287 CRS-----IFPATE 295
>gi|218232078|ref|YP_002368944.1| ribonuclease Z [Bacillus cereus B4264]
gi|254808610|sp|B7HB12.1|RNZ_BACC4 RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|218160035|gb|ACK60027.1| ribonuclease Z [Bacillus cereus B4264]
Length = 307
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P ++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLKVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIHLKGKQI 230
+V + T N+ V + H I GY I LL KL + + +K I
Sbjct: 117 VVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLE--MGVKPGPI 174
Query: 231 EKLKKSG--VEITDIILSPEVAFTGDTTSEFML----NPRNADALR-----AKILITEAT 279
K K G VE+ D + F G ++ + R +A R A +L+ EAT
Sbjct: 175 FKRLKDGEVVELEDGTILNGNEFIGPPQKGRIITILGDTRYCEASRELAQDADVLVHEAT 234
Query: 280 F-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
F +DE + A + H+ + A K ++LTH SSRY
Sbjct: 235 FAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|257457947|ref|ZP_05623106.1| ribonuclease Z [Treponema vincentii ATCC 35580]
gi|257444660|gb|EEV19744.1| ribonuclease Z [Treponema vincentii ATCC 35580]
Length = 308
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 35/252 (13%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLP-MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIH 166
R R + N +FI+H H DH+ GLP + + S + +P I PP IKE + E
Sbjct: 47 RLNLRWKKINTIFISHTHADHVTGLPGILMLSAQVDRDEPLYIIGPPKIKEYI----ETS 102
Query: 167 RSLGNVELNLDLVALDVGE---TYEMRNDIVVRPFKTHHVIPSQGYVI------------ 211
R + ++ +N +++ ++ E Y+ ++ VR F H P GYV
Sbjct: 103 RQVLDMYINYEIIIKEITEPGIVYKT-DEFQVRAFWLEHTKPCLGYVFEEFPRPGAFDPE 161
Query: 212 --YLLRKKLKKQYIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPR 264
L + L+ G +E + VE + ++ P + +F DT + P
Sbjct: 162 AARRLNVPCGPLWSKLQAGIAVEASDGTVVESSQVLGHPRSGRKFSFVTDTKYLPTIAPE 221
Query: 265 NADALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
A + L+ E+ F E +E A + H ++ + A+ K + L H+S RY
Sbjct: 222 VAG---SDFLVCESMF---EKGMEQDAAEKKHMTCTQAAQIARDAAVKKMALIHYSPRYT 275
Query: 324 IEDIRQAVLKLQ 335
D++Q + Q
Sbjct: 276 DYDLKQLLKDAQ 287
>gi|71985814|ref|NP_001023110.1| Protein HOE-1, isoform b [Caenorhabditis elegans]
gi|351060957|emb|CCD68706.1| Protein HOE-1, isoform b [Caenorhabditis elegans]
Length = 760
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 113/270 (41%), Gaps = 26/270 (9%)
Query: 69 AAVVRKGIDLEGYTIEGVSIGGHETCVIIP-------ELKCAFDIGRCPTRAIQQNFVFI 121
+AV K ++ GY +E + ++I +++ F C + N V I
Sbjct: 428 SAVPSKYRNVTGYLVEA----SENSAILIDVGEGTYGQMRAVFGEDGCKQLLVNLNCVLI 483
Query: 122 THGHLDHIGGLPMYVASR--GLYNLKPPTIFVPPSIKEDVEKLFEIHR-SLGNVELNLDL 178
TH H DH+ GL +A R +L P + +V K + + N+E L++
Sbjct: 484 THAHQDHMNGLYTIIARRKEAFESLGAPYRPLVLVCNRNVLKPMKTYSICFENIEHLLEI 543
Query: 179 VALD---VGETYEMRNDIVVRP-FKTHHVIPSQGYVIYLLRKKLKKQYI--HLKGKQIEK 232
V + + RP + H+ PS+ + + KK + LK Q+
Sbjct: 544 VDISRYPLTPPGSPGGPPGKRPRLPSPHLPPSRDVLQDMSSSFDKKAWKLDELKAVQVHH 603
Query: 233 LKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQ 292
+ + + + + F+GDT +L DA +L+ E+TF D + A +
Sbjct: 604 TRMANGFVMRVA-GKRIVFSGDTKPCDLLVEEGKDA---DVLVHESTFEDGHEA--DAMR 657
Query: 293 HGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
H+ + + ++ K + K ++LTHFS+RY
Sbjct: 658 KRHSTMGQAVDVGKRMNAKHIILTHFSARY 687
>gi|336437868|ref|ZP_08617566.1| ribonuclease Z [Lachnospiraceae bacterium 1_4_56FAA]
gi|336004079|gb|EGN34152.1| ribonuclease Z [Lachnospiraceae bacterium 1_4_56FAA]
Length = 301
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 44/257 (17%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + + P + P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRREPLTLIGP---KGLERVVTALRVIAP-ELPF 110
Query: 177 DLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYI---- 223
+ ++V +T+EM N ++ F+ +H + GY + + R ++ K + I
Sbjct: 111 PIHCVEVEGTEQTFEM-NGYRLKAFRVNHNVLCYGYALEIDRAGKFDPERAKAEQIPQMY 169
Query: 224 --HL-KGKQIEKLKKSGVEITDIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
HL KG+ +E + + D++L P ++ +T DT T N + +D +
Sbjct: 170 WKHLQKGETVE--YEGRILTPDLVLGPPRKGIKLTYTTDTRPTDSIRENAKGSD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS-----SRYHIEDIR 328
I E + + E I A+++ H E + AK + K + LTH+S + +++D+R
Sbjct: 223 FICEGMYGEKE-KIAKAREYKHMTFYEAAQLAKDAQVKEMWLTHYSPSLTRAEEYMDDVR 281
Query: 329 Q---AVLKLQSKVSAKV 342
+ A + K+SA++
Sbjct: 282 KIFPAAKAGKDKMSAEL 298
>gi|423317236|ref|ZP_17295141.1| ribonuclease Z [Bergeyella zoohelcum ATCC 43767]
gi|405581369|gb|EKB55398.1| ribonuclease Z [Bergeyella zoohelcum ATCC 43767]
Length = 304
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 37/241 (15%)
Query: 108 RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIH 166
R + + N +FI+H H DH GLP ++S L + P I+ P I E +E +F I
Sbjct: 47 RARVKFSKINHIFISHLHGDHCFGLPGLISSFRLLGREAPLHIYGPKGIAEMLETIFRIT 106
Query: 167 RSLGNVELNLDLVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIH 224
S + E N+ L ++ + D + V +H I + G YL R+K ++++
Sbjct: 107 DS--HREFNVIYHELSSKQSELIYEDHKLTVHTIPLNHRIYANG---YLFREKQGLRHLN 161
Query: 225 L----KGKQIE-----KLKKS-------GVEITDIILS------PEVAFTGDTTSEFMLN 262
+ K +IE KLKK G + + +L+ AF DT
Sbjct: 162 MEEIKKYPEIEVCDYHKLKKGEDFLLSDGYLLKNEVLTTPAEKGKSYAFCSDTR----FK 217
Query: 263 PRNADALRA-KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321
P ++ +L EATFL D E A GHT E AK ++L HFS+R
Sbjct: 218 PDIVPIIKGVDVLYHEATFLHDLK--EMADYTGHTTAMEAALIAKEAEAGKLILGHFSNR 275
Query: 322 Y 322
Y
Sbjct: 276 Y 276
>gi|379704996|ref|YP_005203455.1| Ribonuclease Z [Streptococcus infantarius subsp. infantarius CJ18]
gi|374681695|gb|AEZ61984.1| Ribonuclease Z [Streptococcus infantarius subsp. infantarius CJ18]
Length = 275
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 108/264 (40%), Gaps = 51/264 (19%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP ++ASR + T I+ P
Sbjct: 2 FDCGEGTQRQILETTIRPRKVKRIFITHLHGDHIFGLPGFLASRAFQANEEQTDLDIYGP 61
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGY 209
I+ V L + S + + D +G+ E + VV K H I GY
Sbjct: 62 VGIRSYV--LNSLRLSGARLPYRIHFHEFDENSLGKVMET-DKFVVYAEKLDHTIFCIGY 118
Query: 210 VIYL--LRKKLKKQYIHLKGKQIEKL---KKSGVEIT----------DIILSPE----VA 250
+ L L + + G L KSG ++ D I +P+ +
Sbjct: 119 RVMQKDLEGTLDAEALKAAGVPFGPLFGKIKSGQDVVLEDGTKIIAKDYISAPKKGKVIT 178
Query: 251 FTGDTTSEFMLNPRNADA-----LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
GDT R DA L A IL+ E+T+ + I A++HGH+ ++ + A
Sbjct: 179 VLGDT--------RKTDASVRLGLGADILVHESTYGKGDERI--ARKHGHSTGTQAAQIA 228
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQ 329
K K +LL H S+R+ + +Q
Sbjct: 229 KEASAKCLLLNHISARFLGRECKQ 252
>gi|149181631|ref|ZP_01860124.1| ribonuclease Z [Bacillus sp. SG-1]
gi|148850609|gb|EDL64766.1| ribonuclease Z [Bacillus sp. SG-1]
Length = 307
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVEL--N 175
+FITH H DHI GLP + SR + T++ PP I+E E+ S+ L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGETALTVYGPPGIRE----FIEVSLSVSGTRLLYP 114
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGK 228
L + ++ G +E + V K H +P GY I L KLK+ I G
Sbjct: 115 LHIEEIEEGSIFE-DDQFSVEACKLDHALPCFGYRIVEKDKPGVLQAGKLKELGIK-PGP 172
Query: 229 QIEKLKKSG---------VEITDIILSP----EVAFTGDT--TSEFMLNPRNADALRAKI 273
+KLK+ ++ T+ + P V GDT ++ + NADA
Sbjct: 173 IFKKLKEGERVTLEDGRMIDGTEFLGPPIKGRIVTILGDTRPSAAGVKLAENADA----- 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
LI EATF ++ + H + H+ + E A + + LTH SSR+
Sbjct: 228 LIHEATFSKEQERMAH--DYFHSTTKQAAETAVAANARKLFLTHISSRF 274
>gi|359318464|ref|XP_849493.2| PREDICTED: zinc phosphodiesterase ELAC protein 1 isoform 2 [Canis
lupus familiaris]
Length = 363
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI-------- 165
+FITH H DH GLP + + S + +P I+ P +++ + + E+
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSVVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 166 -----------------HRSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ +V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPTEEQKEFTHVNEMDSLPKEGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKK-------SGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK +GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLDNGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D+ ++ A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK + K ++LTHFS RY
Sbjct: 295 QMAAAFAKLCQAKRLVLTHFSQRY 318
>gi|448330308|ref|ZP_21519591.1| ribonuclease Z [Natrinema versiforme JCM 10478]
gi|445611987|gb|ELY65728.1| ribonuclease Z [Natrinema versiforme JCM 10478]
Length = 314
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + P I P
Sbjct: 35 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGVPGLLQTMAFNDREEPLAIHTPHGT 94
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
++ ++ L +LGN + + + G+ + VR F+T H S GY L+
Sbjct: 95 RQQLKSLVN---ALGNRPSFPVRISEVGDGDVAYRAEEYEVRTFETDHDTRSVGYA--LV 149
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKS-GVEITD-IILSPE-----------VAFTG 253
K ++ + G + +L + VE+ D ++ PE + +TG
Sbjct: 150 EDDRKGRFDRERAEELGVPVGPKFSRLHEGESVELEDGTVVDPEQVVGDPRPGRSIVYTG 209
Query: 254 DTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
DT +E ++ A +LI +ATF DD + A H+ + E A
Sbjct: 210 DTRPAEATIDA----ADEPDLLIHDATFADDMAN--RATDTAHSTARQAAEIANRAGADR 263
Query: 313 VLLTHFSSRY--HIED-IRQAVLKLQSKVSAKVVP 344
+ L H SSRY H ED RQA VP
Sbjct: 264 LALMHLSSRYAGHTEDHERQAREVFAGDADDAFVP 298
>gi|432851559|ref|ZP_20081944.1| ribonuclease Z [Escherichia coli KTE144]
gi|431399897|gb|ELG83287.1| ribonuclease Z [Escherichia coli KTE144]
Length = 311
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + ++P TI+ P I+E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ------- 221
+V + GE + +R V + H + GY I L + LK
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 222 YIHLK-GKQIEKLKKSGVEITDIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ LK GK I + D + +P +A GDT P +A AK +
Sbjct: 181 FQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|379727364|ref|YP_005319549.1| ribonuclease Z [Melissococcus plutonius DAT561]
gi|376318267|dbj|BAL62054.1| ribonuclease Z [Melissococcus plutonius DAT561]
Length = 310
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 47/250 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP ++SR I+ P +KE V+ I ++ EL+
Sbjct: 59 IFITHLHGDHLFGLPGLLSSRSFQGGNEKLVIYGPRGVKEFVQTALRISKTRLAYELSFH 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
+ + + + ++ R + H I S GY I + H Q++KLK+ G
Sbjct: 119 EIDEEGIVFSDEQFTVICRLLE--HGITSYGYRIV--------ERDHEGELQVDKLKELG 168
Query: 238 ---------------VEITD--IILSPE----------VAFTGDTTSEFMLNPRNADALR 270
V + D +I E V GDT LN A
Sbjct: 169 IPSGPLYGKIKKGETVTLKDGQVINGKEFVGQRKKGRVVTILGDTRK--TLNSIKL-AEN 225
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
A +LI E+TF DE + A+ + H+ + E AK K ++LTH S+RY +D
Sbjct: 226 ADVLIHESTFNKDEAKM--ARAYYHSTSEQAAEVAKKANAKQLILTHISARYLTKD---- 279
Query: 331 VLKLQSKVSA 340
L+LQ++ A
Sbjct: 280 TLQLQNEARA 289
>gi|329768001|ref|ZP_08259512.1| hypothetical protein HMPREF0428_01209 [Gemella haemolysans M341]
gi|328838486|gb|EGF88094.1| hypothetical protein HMPREF0428_01209 [Gemella haemolysans M341]
Length = 306
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY---NLKPPTIFVPPSIKEDVEK-LFEIHRSLGNVEL 174
+FI+H H DH+ GL +++SR N TI+ P IK+ +E L H SL
Sbjct: 59 IFISHLHADHVLGLIGFLSSRSFLLDTNASDVTIYGPVGIKDFIENNLLFTHCSLS---Y 115
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLK 234
+++ + + + + V + H I GY I KKQ L ++++L
Sbjct: 116 SVEYIEISSEQCIIDNKSVAVFSYPLAHNIECFGYKILF-----KKQKGSLDANKLKELG 170
Query: 235 -KSGVEITDIILSPEVAFTG--DTTSEFML------------NPRNADAL-----RAKIL 274
G +I + F G +SEF+ + R D L + I+
Sbjct: 171 IMPGPFYREIKEADTFEFNGIMYNSSEFLSEDKPEKEISIIPDTRYFDGLGEFVKNSNII 230
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
I+E T+L E HA+++ H + +I + + +++ LTH S+RY ++A+ L
Sbjct: 231 ISECTYLLKE-DAHHARKNYHLSILDIEKIIAQSKVESLFLTHISARYDRNIEKEAIESL 289
Query: 335 QSKVSAKVV 343
K + K+
Sbjct: 290 HDKCNVKIA 298
>gi|197303575|ref|ZP_03168613.1| hypothetical protein RUMLAC_02301 [Ruminococcus lactaris ATCC
29176]
gi|197297309|gb|EDY31871.1| ribonuclease Z [Ruminococcus lactaris ATCC 29176]
Length = 302
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + K P + P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRKEPLTLIGP---KGLERVVGCLRVIAP-ELPF 110
Query: 177 DLVALDV---GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLK- 226
++ ++ + +EM N ++ F+ +H + GY I + R + K+Q I K
Sbjct: 111 PIIYKEIEGAEQCFEM-NGYRLKAFRVNHNVLCYGYTIEIDRSGKFDPVRAKEQNIPQKY 169
Query: 227 ------GKQIEKLKKSGVEITDIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
G+ ++ + G +++L P ++ +T DT T N +++D +
Sbjct: 170 WSVLQRGECVD--AEEGHFTPEMVLGPPRKGIKLTYTTDTRPTDSIRKNAKDSD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY-----HIEDIR 328
I E + + E + + A ++ H E E AK R K + LTH+S ++ED+R
Sbjct: 223 FICEGMYGEKEKAAK-AVEYKHMTFYEAAELAKETRVKELWLTHYSPSLTRPEPYMEDVR 281
Query: 329 QAVLKLQSKVSAKVVPL 345
+ ++ K V L
Sbjct: 282 KIFPNAKAGKDGKSVDL 298
>gi|322385660|ref|ZP_08059304.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|417922821|ref|ZP_12566307.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|321270398|gb|EFX53314.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
gi|342831969|gb|EGU66272.1| ribonuclease Z [Streptococcus cristatus ATCC 51100]
Length = 309
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 47/243 (19%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVPPSIKEDVEKLFEIHRSLGNVELN 175
+FITH H DHI GLP +++SR + T I+ P IK V + + S +
Sbjct: 59 IFITHLHGDHIFGLPGFLSSRAFQANEEQTDLEIYGPVGIKSFV--MTSLRVSGSRLPYR 116
Query: 176 LDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232
+D D +G+ E + V K H I GY + ++K L+ +K
Sbjct: 117 IDFHEFDENSLGKILET-DKFTVYADKLDHTIFCVGYRV--MQKDLEGTL------DADK 167
Query: 233 LKKSGVEI----------TDIILSPEVAFTG---------DTTSEFMLNPRNAD-----A 268
L+ +GV DI+L T + + R D A
Sbjct: 168 LRAAGVPFGPLFGKVKNGQDIVLEDGTKIIAADYISAPRPGKTITILGDTRKTDSSVRLA 227
Query: 269 LRAKILITEATF--LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+ A +L+ EAT+ D++M A++HGH+ + E AK K +LL H S+R+ +D
Sbjct: 228 VAADVLVHEATYGKGDEKM----ARKHGHSTNMQAAEVAKEAGVKRLLLNHVSARFLSKD 283
Query: 327 IRQ 329
I Q
Sbjct: 284 ISQ 286
>gi|421530810|ref|ZP_15977269.1| ribonuclease Z [Pseudomonas putida S11]
gi|402211736|gb|EJT83174.1| ribonuclease Z [Pseudomonas putida S11]
Length = 316
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 30/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GLP +AS G+ P V P+ D + + + L +L
Sbjct: 59 IFITHVHGDHCFGLPGLLASAGMSGRTQPLDLVLPAALHDWVRQGLV---ASDTFLPFEL 115
Query: 179 VALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSG 237
L V E E +D + V + H +PS G+V L + + L+ + I + G
Sbjct: 116 RLLAVEELVEWHSDALEVTSVQLSHRVPSVGFVFTELNPEPRLNIPRLEAEGIPRGPLWG 175
Query: 238 VEITDII-------------LSP-----EVAFTGDTTSEFMLNPRNADALR-AKILITEA 278
+ L P V GD + +L ADA + A +L+ EA
Sbjct: 176 ELAKGLTVQHGGRRLHGKDYLRPSRQPRRVIVCGDNDNPELL----ADAAKGADVLVHEA 231
Query: 279 TFLDDEMSIEHAQ-QHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TF + +E GH+ + + A+ + ++LTHFS+RY
Sbjct: 232 TF--TQAVVERTGVTFGHSTAAAVARFAETAGVRNLVLTHFSARYQ 275
>gi|167034630|ref|YP_001669861.1| ribonuclease Z [Pseudomonas putida GB-1]
gi|189043788|sp|B0KMS1.1|RNZ_PSEPG RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|166861118|gb|ABY99525.1| Ribonuclease Z [Pseudomonas putida GB-1]
Length = 319
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 40/244 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GLP +AS G+ +P + +P ++ + V + + EL L
Sbjct: 58 IFITHVHGDHCFGLPGLLASAGMSGRTQPLELILPVALHDWVRQGLVASDTFLPFELRL- 116
Query: 178 LVALDVGETYEMRNDIV-VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQI------ 230
L V E E RN+ + V + H +PS G+V L + + L+ + I
Sbjct: 117 ---LAVEELAEWRNEALQVTTVQLSHRVPSVGFVFTELNPEPRLDTQRLQAEGIPRGPLW 173
Query: 231 -EKLKKSGVEITDIILSP-----------EVAFTGDTTSEFMLNPRNADALR-AKILITE 277
E K V+ +L V GD + +L AD + A +L+ E
Sbjct: 174 GELAKGLTVQHDGQLLDGHDYLRPSRPPRRVIVCGDNDNPELL----ADVAKGADVLVHE 229
Query: 278 ATFLDDEMSIEHAQ-QHGHTHLSEIIENAKWIRNKAVLLTHFSSRY--------HIEDIR 328
ATF + +E GH+ + + A+ + ++LTHFS+RY +I+++R
Sbjct: 230 ATF--TQAVVERTGVTFGHSTAAAVARFAEGAGVRNLVLTHFSARYQSDPRRSPNIDNVR 287
Query: 329 QAVL 332
L
Sbjct: 288 DEAL 291
>gi|418005055|ref|ZP_12645055.1| ribonuclease Z [Lactobacillus casei UW1]
gi|418007947|ref|ZP_12647818.1| ribonuclease Z [Lactobacillus casei UW4]
gi|410547706|gb|EKQ21932.1| ribonuclease Z [Lactobacillus casei UW4]
gi|410548052|gb|EKQ22272.1| ribonuclease Z [Lactobacillus casei UW1]
Length = 320
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S L V
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ E+TF DE + A+Q+ H + AK +LL H S+RY
Sbjct: 229 LVHESTFGPDESQL--AKQYYHATNVQAAALAKRAGVGRLLLNHISARY 275
>gi|149721103|ref|XP_001499894.1| PREDICTED: zinc phosphodiesterase ELAC protein 1 [Equus caballus]
Length = 363
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN-----LKPPTIFVPPSIKEDVEKLFEI-HRSLGNV 172
+FITH H DH GLP + + L + +P I+ P +++ + + E+ H L
Sbjct: 58 IFITHLHGDHFFGLPGLLCTISLQSGSTVTKQPIEIYGPAGLRDFIWRTMELSHTELVFP 117
Query: 173 ELNLDLV-ALDVGETYEMRN----------------------------------DIVVRP 197
+ +LV D T E+++ VV+
Sbjct: 118 YVVHELVPTADQCPTEELKDFVHVNRADSPPKDGQGRTILLDSEENSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 178 FRLFHRIPSFGFSVMEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGISVVLENGVTISPQD 237
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D+ ++ A++HGH+
Sbjct: 238 VLKKPIVGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATL--DDAQMDKAKEHGHSTP 294
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK + K ++LTHFS RY
Sbjct: 295 QMAAAFAKLCQAKRLVLTHFSQRY 318
>gi|365862080|ref|ZP_09401837.1| ribonuclease Z [Streptomyces sp. W007]
gi|364008562|gb|EHM29545.1| ribonuclease Z [Streptomyces sp. W007]
Length = 303
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 18/216 (8%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+ +TH H DH GL + L + P T P S + ++L VELN
Sbjct: 59 ICVTHFHGDHSLGLAGVIQRINLDQVPHPVTAHYPASGQHFFDRLRYATAYRETVELNQA 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQIE 231
VA G + + K H + S GY + +L LK+ I G +
Sbjct: 119 PVA-GAGGVLATASAYTLDSAKLSHPVESYGYRLTEPDTRRMLPALLKEHGI--AGPDVG 175
Query: 232 KLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRA-----KILITEATFLDDEMS 286
+L++ GV + D+ L F+++ R D + A +L+ E+TFLD++
Sbjct: 176 RLRREGV-LGDVTLEQVSEERRGQRFAFVMDTRLCDGVYALAEGCDMLVIESTFLDEDEK 234
Query: 287 IEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+ A HGH + AK + ++LTHFS RY
Sbjct: 235 L--AVDHGHLTAGQAARVAKESGVRHLVLTHFSQRY 268
>gi|423389544|ref|ZP_17366770.1| ribonuclease Z [Bacillus cereus BAG1X1-3]
gi|423417944|ref|ZP_17395033.1| ribonuclease Z [Bacillus cereus BAG3X2-1]
gi|401107115|gb|EJQ15072.1| ribonuclease Z [Bacillus cereus BAG3X2-1]
gi|401641635|gb|EJS59352.1| ribonuclease Z [Bacillus cereus BAG1X1-3]
Length = 307
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTTLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|417114953|ref|ZP_11966089.1| ribonuclease BN [Escherichia coli 1.2741]
gi|386140372|gb|EIG81524.1| ribonuclease BN [Escherichia coli 1.2741]
Length = 311
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 43/254 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FI+H H DH+ GLP + SR + + +P TI+ P ++E VE I S + L+
Sbjct: 66 IFISHLHGDHLFGLPGLLCSRSMSGIVQPLTIYGPQGLREFVETALRISGSW--TDYPLE 123
Query: 178 LVALDVGETYE--MRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLKKQYIHLKG---KQI 230
+V + GE + +R V + H + GY I K L Q + G +
Sbjct: 124 IVEIGAGEILDDGLRK---VTAYPMEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPL 180
Query: 231 EKLKKSGVEIT----------DIILSP----EVAFTGDTTSEFMLNPRNADALRAK---I 273
+ K+G IT D + +P +A GDT P +A AK +
Sbjct: 181 FQALKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDT------GPCDAALDLAKGVDV 234
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
++ EAT LD M + A GH+ + A+ +++TH SSRY + + + +
Sbjct: 235 MVHEAT-LDITMEAK-ANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRE 292
Query: 334 LQSKVSAKVVPLTE 347
+S + P TE
Sbjct: 293 CRS-----IFPATE 301
>gi|417999045|ref|ZP_12639258.1| ribonuclease Z [Lactobacillus casei T71499]
gi|410539985|gb|EKQ14507.1| ribonuclease Z [Lactobacillus casei T71499]
Length = 320
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S L V
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ E+TF DE + A+Q+ H + AK +LL H S+RY
Sbjct: 229 LVHESTFGPDESQL--AKQYYHATNVQAAALAKRAGVGRLLLNHISARY 275
>gi|171779659|ref|ZP_02920615.1| hypothetical protein STRINF_01496 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281761|gb|EDT47195.1| ribonuclease Z [Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
Length = 309
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 108/264 (40%), Gaps = 51/264 (19%)
Query: 104 FDIGRCPTRAIQQNFV--------FITHGHLDHIGGLPMYVASRGLYNLKPPT---IFVP 152
FD G R I + + FITH H DHI GLP ++ASR + T I+ P
Sbjct: 36 FDCGEGTQRQILETTIRPRKVKRIFITHLHGDHIFGLPGFLASRAFQANEEQTDLDIYGP 95
Query: 153 PSIKEDVEKLFEIHRSLGNVELNLDLVALD---VGETYEMRNDIVVRPFKTHHVIPSQGY 209
I+ V L + S + + D +G+ E + VV K H I GY
Sbjct: 96 VGIRSYV--LNSLRLSGARLPYRIHFHEFDENSLGKVMET-DKFVVYAEKLDHTIFCIGY 152
Query: 210 VIYL--LRKKLKKQYIHLKGKQIEKL---KKSGVEIT----------DIILSPE----VA 250
+ L L + + G L KSG ++ D I +P+ +
Sbjct: 153 RVMQKDLEGTLDAEALKAAGVPFGPLFGKIKSGQDVVLEDGTKIIAKDYISAPKKGKVIT 212
Query: 251 FTGDTTSEFMLNPRNADA-----LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
GDT R DA L A IL+ E+T+ + I A++HGH+ ++ + A
Sbjct: 213 VLGDT--------RKTDASVRLGLGADILVHESTYGKGDERI--ARKHGHSTGTQAAQIA 262
Query: 306 KWIRNKAVLLTHFSSRYHIEDIRQ 329
K K +LL H S+R+ + +Q
Sbjct: 263 KEASAKCLLLNHISARFLGRECKQ 286
>gi|358065592|ref|ZP_09152128.1| ribonuclease Z [Clostridium hathewayi WAL-18680]
gi|356696078|gb|EHI57701.1| ribonuclease Z [Clostridium hathewayi WAL-18680]
Length = 302
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 38/227 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV---- 172
+ + TH H DHI GLP + + G P + + P + R +GN+
Sbjct: 55 DVICFTHYHADHISGLPGLLLTMGNAERTEPLVLIGPR---------GLERVVGNLRTIA 105
Query: 173 -ELNLDLVALDVGETYEMR--NDIVVRPFKTHHVIPSQGYVIYLLR------KKLKKQYI 223
EL +L +++ E E V+ F+ +H + GY I + R ++ K++ +
Sbjct: 106 PELPFELRFIELAEPREQVKIGPYVIDAFRVNHNVVCYGYSISIPRAGRFDVERAKERGV 165
Query: 224 HLKG----KQIEKLKKSGVEIT-DIILSP-----EVAFTGDTTSEFMLNPRNADALR-AK 272
+K ++ E L+ GV T D++L P +V + DT P A+ R A
Sbjct: 166 PMKAWSRLQKGETLEMDGVVYTPDMVLGPARRGLKVTYCTDTRP----VPVIAEYAREAD 221
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
+ I E + +E A+++ H E AK + K + LTH+S
Sbjct: 222 LFICEGMY-GEEGKEAKAREYKHMTFYEAARLAKEAQPKCMWLTHYS 267
>gi|253579742|ref|ZP_04857010.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848741|gb|EES76703.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 302
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 36/226 (15%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+ + TH H DHI GLP + + G + P V P + +E++ R + EL
Sbjct: 55 DVICFTHYHGDHISGLPGLLLTMGNADRTEPLTLVGP---KGLERVVNALRVIAP-ELPF 110
Query: 177 DLVALDVGETYEM--RNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL--- 225
++ +++ + ++ N + FK +H + GY + +LR+ + K+Q I L
Sbjct: 111 EIKFIEITQPEQVIELNGYRITAFKVNHNVLCYGYTLEILRQGKFSAERAKEQDIPLKYW 170
Query: 226 ----KGKQIEKLKKSGVEIT-DIILSP-----EVAFTGDT--TSEFMLNPRNADALRAKI 273
KG+ IE G+ T +++L P + +T DT T + N + +D +
Sbjct: 171 NPLQKGQTIE---ADGITYTPEMVLGPARKGIRLTYTTDTRPTESILRNAKESD-----L 222
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
I E + +D+ + + A+ + H E A+ R K + LTH+S
Sbjct: 223 FICEGMYGEDDKA-DKARGYKHMTFREAAVLARDARVKEMWLTHYS 267
>gi|194477150|ref|YP_002049329.1| Ribonuclease Z [Paulinella chromatophora]
gi|171192157|gb|ACB43119.1| Ribonuclease Z [Paulinella chromatophora]
Length = 319
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 104/251 (41%), Gaps = 39/251 (15%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R R Q +FITH H DHI GLP +AS GL N + ++ P
Sbjct: 35 FDCGEATQHQILRSELRISQLRRIFITHMHGDHIFGLPGLLASLGLAGNCEGVELYGPDL 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN--DIVVRPFKTHHVIPSQGYVI- 211
+++ +E + L + V + + + D++VR +H +P+ Y I
Sbjct: 95 LRDYLEGTLRTSSTRIGYPLRIHRVRCAANNSAILVDDKDLLVRCTALNHRVPAYAYRIE 154
Query: 212 ---YLLRKKLKK----------QYIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTG 253
R +++ Y HLK + L+ + + P+ + +
Sbjct: 155 QKPRAGRFNIEQARSLGIPPGPAYGHLKAGREIVLQDGRIIKGKTLCGPDKPGCCIVYCT 214
Query: 254 DTT-SEFMLN-PRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT SE +N R AD +LI E+TF E + + +QH + ++ + A
Sbjct: 215 DTVFSEAAVNLSRGAD-----LLIHESTFSHREAEMAYKRQHSTSMMAA--QTAAEAGVG 267
Query: 312 AVLLTHFSSRY 322
++LTH S RY
Sbjct: 268 QLILTHLSPRY 278
>gi|417989605|ref|ZP_12630107.1| ribonuclease Z [Lactobacillus casei A2-362]
gi|410537698|gb|EKQ12268.1| ribonuclease Z [Lactobacillus casei A2-362]
Length = 320
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S + L
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFI 118
Query: 178 L-----VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ E+TF DE + A+Q+ H + AK +LL H S+RY
Sbjct: 229 LVHESTFGPDESQL--AKQYYHATNVQAAALAKRAGVGRLLLNHISARY 275
>gi|417983422|ref|ZP_12624060.1| ribonuclease Z [Lactobacillus casei 21/1]
gi|417992863|ref|ZP_12633215.1| ribonuclease Z [Lactobacillus casei CRF28]
gi|417996211|ref|ZP_12636494.1| ribonuclease Z [Lactobacillus casei M36]
gi|418001983|ref|ZP_12642110.1| ribonuclease Z [Lactobacillus casei UCD174]
gi|418013698|ref|ZP_12653335.1| ribonuclease Z [Lactobacillus casei Lpc-37]
gi|410528368|gb|EKQ03221.1| ribonuclease Z [Lactobacillus casei 21/1]
gi|410532654|gb|EKQ07356.1| ribonuclease Z [Lactobacillus casei CRF28]
gi|410535920|gb|EKQ10530.1| ribonuclease Z [Lactobacillus casei M36]
gi|410545134|gb|EKQ19439.1| ribonuclease Z [Lactobacillus casei UCD174]
gi|410555577|gb|EKQ29515.1| ribonuclease Z [Lactobacillus casei Lpc-37]
Length = 320
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRS-----LGNV 172
VFITH H DHI GLP ++ASR P TI+ P I++ V+ ++ +S L V
Sbjct: 59 VFITHLHGDHIFGLPGFLASRSNQGGTDPLTIYGPSGIEDFVKTSLKVSQSHLSYPLKFV 118
Query: 173 ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ---- 221
L VA + +T+++ D + H I S G+ I LL K++
Sbjct: 119 LLQHPGVAFE-DQTFKVTFD------RLDHRITSFGFRIEEKPHPGELLIDKVRAAKIPS 171
Query: 222 ---YIHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNPRNADALRAKI 273
Y LK + L + + P VA GDT M N A A +
Sbjct: 172 GPVYAALKAGETVTLPDGRIFDGHDFIGPAQPGRTVAIFGDTR---MCNRALPLAAGADV 228
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
L+ E+TF DE + A+Q+ H + AK +LL H S+RY
Sbjct: 229 LVHESTFGPDESQL--AKQYYHATNVQAAALAKRAGVGRLLLNHISARY 275
>gi|423406432|ref|ZP_17383581.1| ribonuclease Z [Bacillus cereus BAG2X1-3]
gi|401660426|gb|EJS77908.1| ribonuclease Z [Bacillus cereus BAG2X1-3]
Length = 305
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 100/237 (42%), Gaps = 39/237 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTRLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLAMGVKPGPVFK 176
Query: 224 HLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK G+ +E + + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTMLNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
L+ EATF +DE + A + H+ + A K ++LTH SSRY E ++
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQGETYKE 282
>gi|377557317|ref|ZP_09786967.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
gi|376165723|gb|EHS84664.1| Ribonuclease Z (RNase Z) [Lactobacillus gastricus PS3]
Length = 308
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 35/242 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR P TI+ P IK VE +I + L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGDEPLTIYGPVGIKTFVETALQISET----RLSYP 114
Query: 178 LVALDVGETYEMRND--IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ------- 221
+ +++ + E+ D V + H I GY I L +KL++
Sbjct: 115 IEYVEIKQDGEIFKDQTFQVEARRMDHKIACFGYRIVEADHPGELQVEKLRELAIPAGPI 174
Query: 222 YIHLKGKQIEKLKKSGVEIT--DIILSPE----VAFTGDTTSEFMLNPRNAD-ALRAKIL 274
Y +K Q L G +I D I +P+ VA DT +N + A A +L
Sbjct: 175 YGQIKAGQTVTL-PDGRQINGQDFIGAPQKGRIVAIIPDT----RVNENSVKLAQNADVL 229
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
+ E TF +E + H H + + + AK +LL H S+RY + Q ++
Sbjct: 230 VHEGTFAKNEQRMAHNYYHSTSAQAATV--AKQAHVGRLLLNHISARYVGKAANQLAYQV 287
Query: 335 QS 336
Q+
Sbjct: 288 QN 289
>gi|333369588|ref|ZP_08461698.1| ribonuclease Z [Psychrobacter sp. 1501(2011)]
gi|332970665|gb|EGK09647.1| ribonuclease Z [Psychrobacter sp. 1501(2011)]
Length = 357
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 104/259 (40%), Gaps = 62/259 (23%)
Query: 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKL---------FE 164
Q + ITH H DH GLP +AS + K TI P +IK+ +E + FE
Sbjct: 67 QLAVICITHVHGDHCYGLPGLLASMAMSGRKESLTIIAPQAIKQFIEAVKATTELYLPFE 126
Query: 165 IH----RSL-GNVELN-LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKL 218
I SL + EL L V++ + T+ + +++ K H + S G+ I
Sbjct: 127 IEFITIESLFESTELTPLHTVSVPLSPTHHLDIEVI----KLSHRVESYGFKI------- 175
Query: 219 KKQYIHLKGKQIEKLKKSGVEIT----------DIILSP-----------------EVAF 251
Q + EKLK G+E T D+ LS +
Sbjct: 176 -TQTVQTIKLDTEKLKADGIEPTAAWGRLQAGEDVTLSNGSQLKSMDYTQRVAQVINIIV 234
Query: 252 TGDTTSEFMLNPRNADALRAKILITEATFL----DDEMSIEHAQQHGHTHLSEIIENAKW 307
GD S +LN A A +L+ EAT+ D MS E A HT I A+
Sbjct: 235 AGDNDSPQLLNEA---AKGADLLVHEATYTQAVADKIMSREDAFDPMHTTAKRIASFAQS 291
Query: 308 IRNKAVLLTHFSSRYHIED 326
+ ++LTHFS+RY D
Sbjct: 292 AKLNNLILTHFSARYQPYD 310
>gi|423104052|ref|ZP_17091754.1| ribonuclease Z [Klebsiella oxytoca 10-5242]
gi|376385694|gb|EHS98415.1| ribonuclease Z [Klebsiella oxytoca 10-5242]
Length = 306
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 106/269 (39%), Gaps = 38/269 (14%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R P + N +FITH H DH+ GLP + SR + N P T++ P
Sbjct: 37 FDCGEGTQHQFLRTPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKG 96
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM-RNDIVVRPFKTHHVIPSQGYVIYL 213
+K VE + S + L + ++VG + V + +H + GY I
Sbjct: 97 LKAFVETALRLSGSWTDYPLTI----IEVGPGLVLDEAGFRVTAWPLNHPVECYGYRIEQ 152
Query: 214 LRKKLKKQYIHL------KGKQIEKLKKS-GVEITD-------IILSP-----EVAFTGD 254
K + L G ++LK+ VE+ D L P ++A GD
Sbjct: 153 HDKPGTLDAVQLIAEGVPPGPLFQRLKQGLTVELEDGRRIDGSRYLGPATPGKKLAIFGD 212
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T A I++ E T ++ E A GH+ + A+ ++
Sbjct: 213 TAP---CEAARELAQGVDIMVHEVTL--EQAMAEKANSRGHSTSQQTAALARDAGVGTLI 267
Query: 315 LTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
THFSSRY E ++ + + + + V+
Sbjct: 268 ATHFSSRYDAEGCQRLLAECREVFPSTVL 296
>gi|291394385|ref|XP_002713584.1| PREDICTED: elaC homolog 1-like [Oryctolagus cuniculus]
Length = 363
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 107/265 (40%), Gaps = 65/265 (24%)
Query: 119 VFITHGHLDHIGGLPMYVASRGL-----YNLKPPTIFVPPSIKEDVEKLFEIH------- 166
+FITH H DHI GLP + + L + +P IF P +++ + + E+
Sbjct: 58 IFITHLHGDHIFGLPGLLCTISLQSSCTVSRQPIEIFGPVGLRDFIWRTMELSHTELVFP 117
Query: 167 ------------------RSLGNV--------ELNLDLVALDVGE-TYEMRND--IVVRP 197
+ L V E + LD E +Y + +D VV+
Sbjct: 118 YVVHELVPTADQCPTEALKELAQVHPADGPPKEGRGRTILLDPEEDSYLLVDDEQFVVKA 177
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLKKSGVEI---TDIILSPE 248
F+ H IP+ G+ + ++ K LK G KLK +G+ I + +SP+
Sbjct: 178 FRLFHRIPAFGFSVMEKKRPGKLNAQKLKDLGVPPGPAYGKLK-NGISIVLENGVTISPQ 236
Query: 249 -----------VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297
+ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 237 EVLKKPVSGRKICILGDC-SGVVGDGGVKLCFEADLLIHEATLDDAQM--DKAKEHGHST 293
Query: 298 LSEIIENAKWIRNKAVLLTHFSSRY 322
AK K ++LTHFS RY
Sbjct: 294 PWMAATFAKLCHAKRLVLTHFSQRY 318
>gi|229019356|ref|ZP_04176180.1| Ribonuclease Z [Bacillus cereus AH1273]
gi|229025602|ref|ZP_04182009.1| Ribonuclease Z [Bacillus cereus AH1272]
gi|228735696|gb|EEL86284.1| Ribonuclease Z [Bacillus cereus AH1272]
gi|228741924|gb|EEL92100.1| Ribonuclease Z [Bacillus cereus AH1273]
Length = 307
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTTLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------YI 223
+V + T N+ V + H I GY I LL KL + +
Sbjct: 117 IVEITEEGTVFEDNEFYVETKRLSHGIECFGYRIVEKDIQGALLVDKLLEMGVKPGPLFK 176
Query: 224 HLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AKI 273
LK ++ +L+ + D I P+ + GDT R +A R A +
Sbjct: 177 RLKDGEVVELENGTILNGKDFIGPPQKGRIITILGDT--------RYCEASRELAQDADV 228
Query: 274 LITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
L+ EATF +DE + A + H+ + A K ++LTH SSRY
Sbjct: 229 LVHEATFAAEDE---QQAYDYFHSTSKQAASIALQANAKRLILTHISSRYQ 276
>gi|389852371|ref|YP_006354605.1| ribonuclease Z [Pyrococcus sp. ST04]
gi|388249677|gb|AFK22530.1| Ribonuclease Z [Pyrococcus sp. ST04]
Length = 305
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH GL + + L++ K P I+ PP V+ L L ++ ++
Sbjct: 57 IFITHFHGDHYIGLLSLIQTMNLWDRKEPLEIYGPPGAVTFVKNLLRTGYFLPTFKIIIN 116
Query: 178 LVALDVGETYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK---------G 227
+V E ++N + V PF+ H +P+ GYV +++ K+ L+ G
Sbjct: 117 ----EVWEGDVIKNKEYKVVPFEVSHGVPALGYV---FKERDKRGNFDLEKIKRLGLSPG 169
Query: 228 KQIEKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADALRAKILI 275
+++L+K G +EI+ I + E + +TGD T L D +LI
Sbjct: 170 PWMKELEKRGKIEISGIEIRLEDVTGPKKRGAKIVYTGD-TEPITLGDLCKD---CDMLI 225
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKL 334
EAT++ S E + H+ + E + R K + L H RY + + A K+
Sbjct: 226 HEATYI----SPEDRGESYHSTIGEACNSFVESRCKVLALFHRGPRYKYSEYKIAAKKI 280
>gi|154151133|ref|YP_001404751.1| ribonuclease Z [Methanoregula boonei 6A8]
gi|153999685|gb|ABS56108.1| ribonuclease Z [Methanoregula boonei 6A8]
Length = 312
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 46/248 (18%)
Query: 101 KCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKEDV 159
+C F I + +F++H H DH G+ V + +P TI+ P + + V
Sbjct: 52 RCGFTI----------DAIFVSHWHADHFLGIFGLVQTMSFNGRTEPLTIYGPSWVHDFV 101
Query: 160 EKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------- 211
E + ++ R N++ LD V L+ G + F H +P+ GYV+
Sbjct: 102 ETVKKVSRF--NLKFTLDSVELEEGSWVRFEG-YTITAFAASHGLPALGYVLEEDPRPGR 158
Query: 212 ------YLLRKKLKKQYIHLKGKQIEKLKKSGVEI----TDIILSP----EVAFTGDT-- 255
L + L+ + K+ K G E +D++ P +V +TGDT
Sbjct: 159 FDREHAIELGVPAGPLFGRLQRGETVKVTKDGEEREVLPSDVMGEPRPGRKVVYTGDTRP 218
Query: 256 -TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+ +NAD +LI +AT+ DE A + H ++ + A + + ++
Sbjct: 219 IIPALVAYGKNAD-----LLIHDATY--DESEKARAAEFYHATAAQAGQAAAAMNARTLV 271
Query: 315 LTHFSSRY 322
LTH SSRY
Sbjct: 272 LTHISSRY 279
>gi|452974941|gb|EME74760.1| ribonuclease Z [Bacillus sonorensis L12]
Length = 307
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 100/237 (42%), Gaps = 36/237 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKP-PTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + T++ P IK +E + + L
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGESLLTVYGPKGIKTYLETVLDAT----GTHLTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQ 229
LV ++ E +D +V H IP+ GY I L + LK+ I G
Sbjct: 115 LVIEEIEEGIVFEDDQFIVTAKSVVHGIPAFGYRIEEKDIPGALDAEALKEAGIS-PGPV 173
Query: 230 IEKLKKS---------GVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAKIL 274
+KLK V D I P+ +A +GDT + NAD +L
Sbjct: 174 YQKLKNGETVTLEDGRTVNGADFIGPPKKGRIIAISGDTKQCENVKILAENAD-----VL 228
Query: 275 ITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
+ EATF + E A + H+ + E AK ++LTH S+RY E + + V
Sbjct: 229 VHEATFAKGDR--ELAGDYYHSTTEQAAETAKAAGAGQLILTHISARYQGESVNELV 283
>gi|33240879|ref|NP_875821.1| metallo-beta-lactamase superfamily protein [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|41017540|sp|Q7VAN0.1|RNZ_PROMA RecName: Full=Ribonuclease Z; Short=RNase Z; AltName: Full=tRNA 3
endonuclease; AltName: Full=tRNase Z
gi|33238408|gb|AAQ00474.1| Metallo-beta-lactamase superfamily enzyme [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 320
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 33/248 (13%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPS 154
FD G R R Q +FITH H DHI GLP +AS GL N ++ P +
Sbjct: 35 FDCGEGTQHQFLRSDLRTSQLKKIFITHMHGDHIYGLPGLMASLGLAGNSLGLDLYGPSA 94
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGET---YEMRNDIVVRPFKTHHVIPSQGYVI 211
+K ++ + + S + + + + L+ E +E ND +V H +P+ Y +
Sbjct: 95 LKGFLDGILKSSSSRISYPMKIHGLELESAENKIIFE-DNDFLVTCTPLIHRVPAFAYRV 153
Query: 212 --------------YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE---VAFTGD 254
LR Y L+ QI KLK + + P+ +F
Sbjct: 154 DEKAKPGRFDVEKAKALRIPPGPIYSQLQKGQIVKLKDGRIFNGNDFCGPQRKGASFVYC 213
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
T + F A A +LI EATF ++ + + +QH + ++ I + + ++
Sbjct: 214 TDTMFAQTALKL-ANGADLLIHEATFSHEDSDLAYQRQHSTSTMAAQIASEANVGQ--LV 270
Query: 315 LTHFSSRY 322
LTH S RY
Sbjct: 271 LTHLSPRY 278
>gi|167522291|ref|XP_001745483.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775832|gb|EDQ89454.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 38/245 (15%)
Query: 109 CP-TRAIQQNFVFITHGHLDHIGGLPMYVAS----RGLYNLKPPTIFVPPSIKEDVEKLF 163
CP + + + + ITH H DH+ GLP +A+ G +P + P ++ +E +
Sbjct: 101 CPEVKGSRLDAILITHLHADHVLGLPGLLATLSMAGGRSESQPLKVIGPTGLRRLIETIL 160
Query: 164 EIHRSLGNVELNLDLVALDVGETYEM-------RNDIVVRPFKTHHVIPSQGYVIYLLR- 215
E+ + + +D LD ET+E+ ++ P K H +P GYVI
Sbjct: 161 EL--TFSYLTFPIDYHELDPLETHELGPMFGPDTPELAAYPIK--HAVPCLGYVITESPP 216
Query: 216 ----KKLKKQYIHLKGKQIEKLKKSG--------VEITDII---LSP-EVAFTGDTTSEF 259
+ + + + G + L++ G V + D+ L P +V GDT+
Sbjct: 217 TPKIDAARAKALGVSGPLLGTLRREGSVTIEGQLVHLEDVCHAALPPRKVVLLGDTSDAS 276
Query: 260 MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFS 319
L +A ++ EAT L M + A +GH+ + ++ A + ++LTH S
Sbjct: 277 SL---HAAGQGCHTVVHEAT-LASGME-DQAVANGHSTTNMAVDTALALGASRLILTHIS 331
Query: 320 SRYHI 324
RY +
Sbjct: 332 PRYAV 336
>gi|228998930|ref|ZP_04158514.1| Ribonuclease Z [Bacillus mycoides Rock3-17]
gi|229006461|ref|ZP_04164115.1| Ribonuclease Z [Bacillus mycoides Rock1-4]
gi|228754789|gb|EEM04180.1| Ribonuclease Z [Bacillus mycoides Rock1-4]
gi|228760846|gb|EEM09808.1| Ribonuclease Z [Bacillus mycoides Rock3-17]
Length = 307
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 41/244 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P T++ P IK+ +E + S +V+ L+
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGTTPLTVYGPKGIKQFIEVALSV--STTHVKYPLE 116
Query: 178 LVAL-DVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ-------Y 222
+V + + G +E + V + H I GY I +LL +KL + +
Sbjct: 117 IVEITEEGIVFEDKQ-FHVETKRLSHGIECFGYRIVEKDIQGHLLVEKLLEAGVKPGPIF 175
Query: 223 IHLKGKQIEKLKKSGV-EITDIILSPE----VAFTGDTTSEFMLNPRNADALR-----AK 272
LK ++ +L+ V D I P+ + GDT R +A R A
Sbjct: 176 KRLKDGEVVELEDGRVLHGKDFIGPPQKGRIITILGDT--------RYCEASRILAQDAD 227
Query: 273 ILITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
IL+ EATF DE+ A + H+ + A K ++LTH SSRY + ++ +
Sbjct: 228 ILVHEATFAAADEI---QAHDYFHSTTEQAASIALQANVKRLILTHISSRYQADTYKELL 284
Query: 332 LKLQ 335
+ Q
Sbjct: 285 QEAQ 288
>gi|444707092|gb|ELW48397.1| Zinc phosphodiesterase ELAC protein 1 [Tupaia chinensis]
Length = 391
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 63/264 (23%)
Query: 119 VFITHGHLDHIGGLP-----MYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI-HRSLGNV 172
+FITH H DH GLP + + S + +P I+ P +++ + + E+ H L
Sbjct: 86 IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPVGLRDFIWRTMELSHTELVFP 145
Query: 173 ELNLDLV-ALDVGETYEMRN----------------------------------DIVVRP 197
+ +LV D T E++ VV+
Sbjct: 146 YVVHELVPTADQCPTEELKEFAHANQADNPPKEGQGRNILLDSEENSYLLVDNEQFVVKA 205
Query: 198 FKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GKQIEKLK-------KSGVEIT--D 242
F+ H IPS G+ + ++ K LK G KLK ++GV I+ D
Sbjct: 206 FRLFHRIPSFGFSVVEKKRPGKLNAQKLKDLGVPPGPAYGKLKNGVSVVLENGVTISPQD 265
Query: 243 IILSP----EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHL 298
++ P ++ GD S + + A +LI EAT D +M + A++HGH+
Sbjct: 266 VLKKPVVGRKICILGDC-SGVVGDGGVKQCFEADLLIHEATLDDTQM--DKAKEHGHSTP 322
Query: 299 SEIIENAKWIRNKAVLLTHFSSRY 322
AK K ++LTHFS RY
Sbjct: 323 QMAATFAKLCHAKRLVLTHFSQRY 346
>gi|385786468|ref|YP_005817577.1| ribonuclease Z [Erwinia sp. Ejp617]
gi|310765740|gb|ADP10690.1| ribonuclease Z [Erwinia sp. Ejp617]
Length = 304
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 113/274 (41%), Gaps = 45/274 (16%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R P + + +FITH H DHI GLP + SR + ++P T++ P
Sbjct: 36 FDCGEGTQHQILRTPIKPGRIEKIFITHLHGDHIFGLPGLLTSRSMNGCVEPMTLYGPSG 95
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI--- 211
IK VE + S N L+++ + GE ++ + V + H + GY I
Sbjct: 96 IKTFVETSLSLSGSWLN--FPLEIIEISAGEVFQDAH-FRVTAYPLTHPVECYGYRIDEH 152
Query: 212 ----YLLRKKLKKQYIHLKGKQIEKLKKS-GVEITD------------IILSPEVAFTGD 254
L +KL + G LK+ V ++D I +A GD
Sbjct: 153 DKPGALDAQKLAAHGVP-TGPYFYDLKQGRSVTLSDGRIINGWDYVGSTIKGRSLAIFGD 211
Query: 255 TTSEFMLNPRNADALRAKILITEATFLDDEMSIEH-AQQHGHTHLSEIIENAKWIRNKAV 313
T A +++ EAT E+++E A GH+ + A+ + +
Sbjct: 212 TAPTAAATELAAG---VDVMVHEATL---EVAMEEKANARGHSSTVQAARVAQQSGAERL 265
Query: 314 LLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347
++TH SSRY +R +L ++ A V P TE
Sbjct: 266 IITHLSSRY----LRHDCERLLAECRA-VFPHTE 294
>gi|284163348|ref|YP_003401627.1| ribonuclease Z [Haloterrigena turkmenica DSM 5511]
gi|284013003|gb|ADB58954.1| ribonuclease Z [Haloterrigena turkmenica DSM 5511]
Length = 314
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 56/276 (20%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + +F+TH H DH+ G+P + + + + P I P
Sbjct: 35 FDAGEGTQRQMMRFGTGFSVSHLFVTHLHGDHVLGIPGLLQTMDFNDREEPLAIHTPHGT 94
Query: 156 KEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ L +LGN + + + G+ ++ VR F T H S GY L+
Sbjct: 95 RRQLKGLVN---ALGNRPSFPVRINEVGDGDVAYRADEYEVRAFATDHDARSVGYA--LV 149
Query: 215 RKKLKKQYIHLK--------GKQIEKLKKSG-VEITD-IILSPE-----------VAFTG 253
K ++ + G + KL + VE+ D ++ PE + +TG
Sbjct: 150 EDDRKGRFDRERAEELGVPVGPKFSKLHEGEPVELEDGTVVEPEQVVGDPRPGRAIVYTG 209
Query: 254 DT-----TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
DT T E +P ++LI +ATF DD + A++ H+ + E A
Sbjct: 210 DTRPAAATVEAADDP--------ELLIHDATFADDRA--DRARKTAHSTARQAAEIANRA 259
Query: 309 RNKAVLLTHFSSRY------HIEDIRQAVLKLQSKV 338
+ L H SSRY H+E R+ ++ V
Sbjct: 260 GADQLALMHLSSRYAGQTDAHLEQAREVFAGDETDV 295
>gi|222445953|ref|ZP_03608468.1| hypothetical protein METSMIALI_01601 [Methanobrevibacter smithii
DSM 2375]
gi|222435518|gb|EEE42683.1| ribonuclease Z [Methanobrevibacter smithii DSM 2375]
Length = 300
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 120/266 (45%), Gaps = 43/266 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPS 154
FD G R + + + +FI+H H DHI GLP + S KP TI+ P
Sbjct: 33 FDCGESTQRQLIYAKISPMKISKIFISHYHGDHILGLPGLLQSLNFRGREKPLTIYGPKG 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+K+ ++ SLG + + + +++ ET ++ +++ + H + + Y I
Sbjct: 93 LKKVENAIY----SLGYCKFDFPIEFIEISSETILETDEYIIKSQEVMHNVTNLAYSIEE 148
Query: 214 LRKK--LKKQYIHLK---GKQIEKLKKS-GVEITDIILSPE-----------VAFTGDT- 255
+K L+ + I L G KL VE+ I+ PE + ++GDT
Sbjct: 149 KKKPRFLRNKAIELGVPVGPLFGKLHNGEEVEVNGKIIKPEQVLGDARKGIKITYSGDTR 208
Query: 256 -TSEFMLNPRNADALRAKILITEATF-LDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
E + +N + +LI E+T+ L+D+ + A+++ H+ + AK K +
Sbjct: 209 PCEEMIEFAKN-----STLLIHESTYTLEDD---DKARENFHSTSQDAATIAKCSNTKRL 260
Query: 314 LLTHFSSRY-HIEDIRQAVLKLQSKV 338
+LTH S+RY ED+ + K+ V
Sbjct: 261 VLTHISTRYTDTEDLLKEAKKVFENV 286
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,482,919,747
Number of Sequences: 23463169
Number of extensions: 223744989
Number of successful extensions: 671723
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 2082
Number of HSP's that attempted gapping in prelim test: 669433
Number of HSP's gapped (non-prelim): 2686
length of query: 355
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 212
effective length of database: 9,003,962,200
effective search space: 1908839986400
effective search space used: 1908839986400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)