BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018507
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L633|RNZC_ARATH Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2
SV=1
Length = 354
Score = 547 bits (1409), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/359 (74%), Positives = 306/359 (85%), Gaps = 10/359 (2%)
Query: 1 MQLS--LPTSPSKLPTIFPFHPSSIPKTPQSPHHLSLQSHVGP---LNALKSAGFLSSIS 55
MQLS P SP P IFP + K P H L+ Q ++ +K +G+ SSIS
Sbjct: 1 MQLSSSFPISP---PKIFP--STKHHKPPVITHQLAAQIQSNRRHFVSPVKVSGYFSSIS 55
Query: 56 RAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQ 115
RAI+EEEEYRKARAAV RKG++LE Y IEG+S+GGHETCVI+PELKC FDIGRCP+RAIQ
Sbjct: 56 RAIEEEEEYRKARAAVNRKGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQ 115
Query: 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
Q F+FITH HLDHIGGLPMYVASRGLYNL+PP IFVPPSIKEDVEKL EIHR++G VELN
Sbjct: 116 QKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELN 175
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKK 235
++L+ L VGETYE+RNDIVVRPF THHVIPSQGYVIY +RKKL+KQY HLKGKQIEK+KK
Sbjct: 176 VELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKK 235
Query: 236 SGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295
SGVEITD ILSPE+AFTGDTTSE+ML+PRNADALRAK+LITEATFLD+ S EHAQ GH
Sbjct: 236 SGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFLDESFSTEHAQALGH 295
Query: 296 THLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354
TH+S+IIENAKWIR+K VLLTHFSSRYH+E+IR+AVLKLQSKVSAKV+PLTEGF+S Y+
Sbjct: 296 THISQIIENAKWIRSKTVLLTHFSSRYHVEEIREAVLKLQSKVSAKVIPLTEGFRSRYS 354
>sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3
Length = 280
Score = 362 bits (929), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 167/277 (60%), Positives = 218/277 (78%)
Query: 73 RKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGL 132
+K + +EGY IEG+SIGGHETC+I P L+ AFDIGRCP RAI Q+F+FI+H H+DHIGGL
Sbjct: 4 KKAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGL 63
Query: 133 PMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND 192
PMYVA+RGLY +KPPTI VP SIKE VE LFE+HR L + EL +LV LD+GE + +R D
Sbjct: 64 PMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKD 123
Query: 193 IVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252
+ V+ FKT HVI SQGYV+Y + KLKK+YI L G +I+ LK SGVEITD I++PEVAFT
Sbjct: 124 LKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFT 183
Query: 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
GDTTS+F+++ NADAL+AK+L+ E+TFLDD +S+EHA+ +GH H+SEI+ +A+ NKA
Sbjct: 184 GDTTSDFVVDETNADALKAKVLVMESTFLDDSVSVEHARDYGHIHISEIVNHAEKFENKA 243
Query: 313 VLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGF 349
+LL HFS+RY +++I AV L + +V LT+GF
Sbjct: 244 ILLIHFSARYTVKEIEDAVSALPPPLEGRVFALTQGF 280
>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1
SV=1
Length = 176
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 107/169 (63%), Positives = 139/169 (82%)
Query: 76 IDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAIQQNFVFITHGHLDHIGGLPMY 135
+++EGY +EG+SIGGHETCVI P L AFDIGRCP RA+ Q+F+FI+H HLDHIGGLPMY
Sbjct: 7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMY 66
Query: 136 VASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVV 195
VA+RGLY L+PPTIFVP ++E VE+LF++HR++ ELN LV LD+GE YE+R D+ V
Sbjct: 67 VATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKV 126
Query: 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDII 244
R FKT+H IPSQGYVIY +++KLK+ Y+ L G +I++LK SGVEIT+ +
Sbjct: 127 RAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTV 175
>sp|Q9HN60|RNZ_HALSA Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=rnz PE=3 SV=1
Length = 308
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+P + A A +LI +ATF +D + E A + GH+ E + A KA+ LT
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGEAADVATEAGAKALALT 267
Query: 317 HFSSRY 322
H SSRY
Sbjct: 268 HVSSRY 273
>sp|B0R7E2|RNZ_HALS3 Ribonuclease Z OS=Halobacterium salinarum (strain ATCC 29341 / DSM
671 / R1) GN=rnz PE=3 SV=1
Length = 308
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 34/246 (13%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + VFITHGH DH+ GLP V + + P TI VP +
Sbjct: 35 FDAGEATQRQMMRYKTGFGVSDVFITHGHGDHVFGLPGLVHTWDFNDRTDPLTIHVPRGL 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY--- 212
+ D+E L + + G+V + + G +D VR F+T H S GY +
Sbjct: 95 RGDIEDL--VFSAGGDVGYPVRITEATPGAVVRSHDDYEVRAFETAHSTASVGYALVEDD 152
Query: 213 ----LLRKKLKKQYIHLKGKQIEKLKKSGVEITD-IILSPE-----------VAFTGDTT 256
R + ++ + + K VE+ D ++SPE + +TGDT
Sbjct: 153 RTGRFDRARAEELGVPVGPKFSTLHDGQPVELDDGTVVSPEQVVGDPRPGRTLVYTGDTR 212
Query: 257 SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT 316
+P + A A +LI +ATF +D + E A + GH+ E + A KA+ LT
Sbjct: 213 PH---DPVVSAAEDADLLIHDATFAND--ASERAAETGHSTAGEAADVATEAGAKALALT 267
Query: 317 HFSSRY 322
H SSRY
Sbjct: 268 HVSSRY 273
>sp|A4YHP1|RNZ_METS5 Ribonuclease Z OS=Metallosphaera sedula (strain ATCC 51363 / DSM
5348) GN=rnz PE=3 SV=1
Length = 291
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 38/227 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELN 175
N + ITH H DH+ GLP + + G+Y+ K I P +K+ + + FE R+ +
Sbjct: 54 NVIAITHLHADHVLGLPSLIQTMGMYDRKERLYILGPEGLKDLLTETFE--RTYFSPNFP 111
Query: 176 LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQYIHLKGKQ 229
++ V+ +YE + I VRPF+T HV+PSQGY++ L ++L+++ + +
Sbjct: 112 IEFVS-----SYESQG-IRVRPFRTCHVVPSQGYLVEEKDTANLDAERLRREGV--TDWR 163
Query: 230 IEKLKKSGVEI--TDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILIT 276
+ ++ K G E+ D +L PE +A+TGDT E ++N +L+
Sbjct: 164 VMRMLKEGKEVPWGDRVLKPEDYLIVKRGIRIAYTGDTRPCETVINSVKG----VDLLLH 219
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
++TF E I+ A ++GH+ +E A+ K + L H S+RY
Sbjct: 220 DSTF---EQGID-ASEYGHSTSTEAATVAREAEVKRLALIHISARYR 262
>sp|B9DNT1|RNZ_STACT Ribonuclease Z OS=Staphylococcus carnosus (strain TM300) GN=rnz
PE=3 SV=1
Length = 306
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVEL 174
N +FITH H DHI GLP + SR KP TI P IK VE + SL +
Sbjct: 57 NHIFITHMHGDHIYGLPGLLTSRSFQGGENKPLTIVGPRGIKNYVETTLQ--ASLSRLNY 114
Query: 175 NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLK------GK 228
+ + +D Y V + +H +PS GY I K L+ G
Sbjct: 115 PVTFIEIDDQLHYHHEG-FTVSAYNLNHGVPSFGYRIEAPTTSGKIDVASLREIGMEPGP 173
Query: 229 QIEKLKKSGVEI-TDII-----------LSPEVAFTGDTT---SEFMLNPRNADALRAKI 273
+ +++K S I D + + P++A GDT +E L A A +
Sbjct: 174 KYQEVKNSDSFIFNDKVYQSSDFKGEEKVGPKIAIFGDTMPCENELKL------ADNADL 227
Query: 274 LITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLK 333
L+ EAT++D + S+ A H H+H+++++ + +K LL H S+RY++ DI +
Sbjct: 228 LVHEATYIDGDRSL--ADSHHHSHINDVLHLLEATNSKQALLNHISNRYNLSDIDVIYAE 285
Query: 334 LQSK 337
LQ++
Sbjct: 286 LQNQ 289
>sp|B1YLU8|RNZ_EXIS2 Ribonuclease Z OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
13490 / 255-15) GN=rnz PE=3 SV=1
Length = 301
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 115/254 (45%), Gaps = 39/254 (15%)
Query: 98 PELKCAFDIGRC--------PTRAIQQNFVFITHGHLDHIGGLPMYVASR-GLYNLKPPT 148
P++ FD G P + + + +FITH H DHI GLP ++++R L T
Sbjct: 27 PKMTWLFDCGEATQHQMLHSPIKPRKVSTIFITHLHGDHIFGLPGFISTRAALEGTTLLT 86
Query: 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRN-DIVVRPFKTHHVIPSQ 207
IF P IKE +E I + + LD++ ++ G+TYE I V + H +
Sbjct: 87 IFGPKGIKEWLEATLRITGTY--LRYPLDVIEVEAGQTYEQEGFHIHVEALE--HRFLAY 142
Query: 208 GYVIYLLRKK-------LKK-------QYIHLKGKQIEKLKKSGVEITDIILSP----EV 249
GY I +K LK+ Y +K K+ + + + TD + P ++
Sbjct: 143 GYRIEGQEEKGALHVEALKQLGVPSGPLYRQIKQKETFVFEGTEYQSTDFLGEPKPGIKL 202
Query: 250 AFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI 308
A GDT E L A + +L+ EATF D E +HA + GH+ + E A
Sbjct: 203 AVLGDTVPCEGSLRL----AEKVDVLVHEATFADSEQ--DHAGRFGHSTARQAAEIALKA 256
Query: 309 RNKAVLLTHFSSRY 322
K +LLTH S+RY
Sbjct: 257 GVKKLLLTHISARY 270
>sp|Q8Q032|RNZ_METMA Ribonuclease Z OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnz PE=3 SV=1
Length = 305
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 45/251 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R T + + +F++H H DH G+P + + K P TI+ P
Sbjct: 34 FDCGEGTQQQMMRAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFLGRKEPLTIYGPEG 93
Query: 155 IKEDVEKLFEIHRSLGNVELNLDL--VALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212
KE E+ + LG L ++ V L G+ E +N VVR KT H PS GY +
Sbjct: 94 TKE----FTEVFKVLGYCNLKYEVRGVELSPGDIVEGKN-YVVRALKTEHSTPSLGYSLI 148
Query: 213 -------LLRKKLKKQYIHLKGKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
R+K + + L G KL+K VE+ ++ PE V ++G
Sbjct: 149 ENPRPGRFNREKAVELGV-LPGPLFAKLQKGNPVEVNGKLVKPEEVVGAPRPGRTVVYSG 207
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + R+AD +LI + +F DEM+ A++ H+ E+ AK +
Sbjct: 208 DTRPCEAVLEASRDAD-----VLIHDGSFA-DEMA-GWAEESMHSTAGEVASLAKEAGVR 260
Query: 312 AVLLTHFSSRY 322
++LTH SSRY
Sbjct: 261 QLVLTHISSRY 271
>sp|Q973F1|RNZ_SULTO Ribonuclease Z OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545
/ NBRC 100140 / 7) GN=rnz PE=3 SV=1
Length = 293
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 50/259 (19%)
Query: 104 FDIGR-CPTRAIQQNFVF-------ITHGHLDHIGGLPMYVASRGLYNLKPPTIFV-PPS 154
FD G R ++ N F ITH H DH+ GLP + + G+Y+ K + + P
Sbjct: 33 FDCGEGTQWRMMEHNLSFMKIKLIGITHMHGDHVLGLPGMIETMGMYSRKESLLLMGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYV---- 210
+KE +E +F+ N E+ + + YE N I + F+T H I SQGY+
Sbjct: 93 LKEFLEDIFKKTYFYPNFEIQ-------IIDKYEDEN-IKISTFETCHTIESQGYLFEEK 144
Query: 211 --IYLLRKKLKKQYIHLKGKQIEKLKKSG--VEITDIILSPE----------VAFTGDTT 256
+ + KL+K+ I K +I ++ K G VEI +L PE +A+TGDT
Sbjct: 145 DRLKIDIDKLRKEGI--KDWRIIRMLKEGKRVEINGKVLLPEDYLIVKKGIRIAYTGDTG 202
Query: 257 -SEFMLNP-RNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
E ++N ++ D +LI ++TF+D+ + A ++GH++ + A K +
Sbjct: 203 PCEKVINAVKDVD-----LLIHDSTFIDE----KEAYKYGHSNSYDAAYVALKANVKRLA 253
Query: 315 LTHFSSRYHIEDIRQAVLK 333
L H S RY +D + ++K
Sbjct: 254 LFHISPRY--DDTYEMLIK 270
>sp|B9E6P2|RNZ_MACCJ Ribonuclease Z OS=Macrococcus caseolyticus (strain JCSC5402) GN=rnz
PE=3 SV=1
Length = 306
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 46/253 (18%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL--KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FI+H H DHI GLP + SR K T++ P +K+ V+ + I S ++ L
Sbjct: 59 IFISHLHGDHIFGLPGVLTSRSFQGGQDKKLTLYGPTGLKQFVDTVLTI--SCSHLNYPL 116
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKL----------- 218
+++ +D G+ + + NDI + H IPS GY I L+++KL
Sbjct: 117 EIIEIDHGDEFVI-NDIEITVGALKHGIPSFGYRIVMPDTAGNLIKEKLIAEGIAPGPVY 175
Query: 219 KKQYIH----LKGK--QIEKLKKSGVEITDIILSPEVAFTGDTT---SEFMLNPRNADAL 269
K+ +H L GK + K +G + ++ F GDT +E L NAD
Sbjct: 176 KEFKLHEQVTLNGKIYNTKDFKTAGKK------GKKLVFFGDTMPCENEVSL-AENAD-- 226
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQ 329
+++ E T+LD ++ + H ++ H+H+ +++ K +++ H S+RY +DI +
Sbjct: 227 ---VVVHECTYLDGDVELSH--KYCHSHIDDVLSLVSSGSVKKLIINHVSNRYTTKDINR 281
Query: 330 AVLKLQSKVSAKV 342
+ ++ +K +V
Sbjct: 282 LLAEINTKTECEV 294
>sp|Q58897|RNZ_METJA Ribonuclease Z OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rnz
PE=1 SV=2
Length = 317
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 117 NFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELN 175
N +FITH H DHI G+P + S G + K IF P KE +E ++ +E
Sbjct: 57 NHIFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEIIENSLKLGTHY--IEFP 114
Query: 176 LDLVALDVGE---TYEMRN-DIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHL 225
+ + + E Y+ N +I+ P T H IPS Y+ ++K K KK + +
Sbjct: 115 IKVYEIYTKEPITIYKEENYEIIAYP--TEHGIPSYAYIFKEIKKPRLDIEKAKKLGVKI 172
Query: 226 KGKQIEKLKKSGVEITDI---ILSPE-----------VAFTGDTT--SEFMLNPRNADAL 269
G ++KLK +G + +I I+ PE +A++GDT +F + L
Sbjct: 173 -GPDLKKLK-NGEAVKNIYGEIIKPEYVLLPPKKGFCLAYSGDTLPLEDF---GKYLKEL 227
Query: 270 RAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIED 326
+LI EATF D+ + + A+++ H+ + + + AK KA++LTH S+RY E+
Sbjct: 228 GCDVLIHEATF--DDSAKDAAKENMHSTIGDAVNIAKLANVKALILTHISARYDKEE 282
>sp|A7MHT9|RBN_CROS8 Ribonuclease BN OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=rbn PE=3 SV=1
Length = 304
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 44/246 (17%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + + P I+ P I E VE + S + LN+
Sbjct: 59 IFITHLHGDHIFGLPGLLCSRSMAGCETPLEIYGPKGIAEFVETTLRLSGSWTSYPLNVH 118
Query: 178 LVA----LDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLK 226
+ LD GE + V + H + GY I L +LK + +
Sbjct: 119 EITEGQLLDDGE-------LTVTAYPLTHPVECYGYRIEEQDKPGALDAARLKAAGV-MP 170
Query: 227 GKQIEKLKKSGVEIT----------DIILSP----EVAFTGDT--TSEFMLNPRNADALR 270
G ++LK+ G +T D + +P ++A GDT T + + R+ D
Sbjct: 171 GPLFQQLKR-GETVTLADGRTVCGADYLSAPRPGKKIAIFGDTGPTPQAVTLARDVD--- 226
Query: 271 AKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330
+++ E T L+ M+ E A GH+ + E A+ K +L+THFSSRY E+ ++
Sbjct: 227 --VMVHETT-LEAAMA-EKANGRGHSTTQQAAEVARDAGAKRLLMTHFSSRYSAEECQRL 282
Query: 331 VLKLQS 336
+ + Q+
Sbjct: 283 LAECQA 288
>sp|C0ZBP8|RNZ_BREBN Ribonuclease Z OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=rnz PE=3 SV=1
Length = 318
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 116/261 (44%), Gaps = 55/261 (21%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP--TIFVPP 153
FD G R P + Q + +FITH H DH+ GL +ASR L N +P ++ PP
Sbjct: 35 FDCGEGTQHQLLRAPMKISQLDKIFITHLHGDHLYGLIGLLASRSLRNTEPTPLELYGPP 94
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ + E S +++ L++ + G YE +IVV H +PS Y +
Sbjct: 95 GLDRYFRGIMEA--SPVHLQYPLEIKIVSEGVIYE-DEEIVVSCRMAKHRVPSFAYAV-- 149
Query: 214 LRKKLKKQYIHLKGKQIEKLKKSGV-------------EIT----------DIILSPE-- 248
+ K+ + Q+E+ K++GV ++T D + P+
Sbjct: 150 MEKEKTGAF------QVERAKQAGVPSGPLFGALKRGEQVTLEDGRVLDGKDFVGEPQPG 203
Query: 249 --VAFTGDTT-SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305
+ F+GDT S+ +L A A +L+ EAT+ + + A + GH+ E + A
Sbjct: 204 RKIVFSGDTEPSQAVLEL----AKGADLLVHEATYAHHDKEL--ATRSGHSTAREAAQIA 257
Query: 306 KWIRNKAVLLTHFSSRYHIED 326
K K + LTHFS RY ED
Sbjct: 258 KEAGVKELCLTHFSPRYEDED 278
>sp|Q97Z88|RNZ_SULSO Ribonuclease Z OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM
1617 / JCM 11322 / P2) GN=rnz PE=3 SV=1
Length = 291
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 39/242 (16%)
Query: 121 ITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLDLV 179
I+H H DH+ GL +AS GL + K I P +K+ + FE + N ++ +
Sbjct: 59 ISHMHGDHVFGLLGVIASMGLLDRKETLYILGPRKLKDFLYTSFEYSKF--NPSFKIEFI 116
Query: 180 ALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQIEKL 233
+ Y N I + FKT H I SQGY+I + +KL+K+ I + I KL
Sbjct: 117 -----DNYNDEN-ITISTFKTCHTIESQGYLIMEKDRVKIDEEKLEKEKIR-DWRVIRKL 169
Query: 234 KKSG-VEITDIILSPE----------VAFTGDTTSEFMLNPRNADALRA-KILITEATFL 281
K+ VE +L PE VA+TGDT M D+++ ILI ++TFL
Sbjct: 170 KEGKTVEYNGKLLKPEDYLVIKRGSKVAYTGDT----MPCQSVVDSVKGVDILIHDSTFL 225
Query: 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAK 341
D+ A +GH+++++ + A K + LTH S RY ED+ + LK+ ++ K
Sbjct: 226 DE----PSAYTYGHSNVTDAAKIALEASVKLLALTHISPRY--EDVSEH-LKMARRIFPK 278
Query: 342 VV 343
+
Sbjct: 279 SI 280
>sp|Q65HN6|RNZ_BACLD Ribonuclease Z OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=rnz PE=3 SV=1
Length = 307
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP V+SR + P T++ P IK +E ++ +
Sbjct: 59 IFITHLHGDHVYGLPGLVSSRSFQGGEGPLTVYGPQGIKTFLETALDV----SGTHVTYP 114
Query: 178 LVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY------LLRKKLKKQYIHLKGKQI 230
LV ++GE +D +V H IP+ GY + L + K+ G
Sbjct: 115 LVIKEIGEGTVFEDDQFIVTARSVSHGIPAFGYRVQEKDVPGALDAEALKEIGVSPGPVY 174
Query: 231 EKLKKSGVEIT----------DIILSPE----VAFTGDTTSEFMLNPRNADALRAKILIT 276
+KL K+G +T D I P+ VAF+GDT N + A +A +LI
Sbjct: 175 QKL-KNGETVTLEDGRTIHGADFIGPPKKGRIVAFSGDTRP--CENVKRL-AEKADVLIH 230
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAV 331
EATF + E A + H+ + E A+ K ++LTH S+RY E++ + V
Sbjct: 231 EATFAKGDR--ELAGDYYHSTSEQAAETAREACAKKLILTHISARYQGENVLELV 283
>sp|Q8TLK5|RNZ_METAC Ribonuclease Z OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnz PE=3 SV=1
Length = 305
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 47/272 (17%)
Query: 104 FDIG--------RCPTRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155
FD G R T + + +F++H H DH G+P + + K P + P+
Sbjct: 34 FDCGEGTQQQMMRAKTGMMSLSSIFVSHFHADHFLGIPGLIQTMSFMGRKDPLMIYGPAG 93
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDV--GETYEMRNDIVVRPFKTHHVIPSQGYVIYL 213
+ +LF ++LG L ++ +++ G+ E VVR +T H PS GY L
Sbjct: 94 TREFTELF---KALGYFNLKYEIHGMELKPGDVVEGEG-YVVRALETEHSTPSLGYA--L 147
Query: 214 LRKKLKKQYIHLK--------GKQIEKLKKSG-VEITDIILSPE-----------VAFTG 253
+ ++ K G KL+K VE ++ PE + ++G
Sbjct: 148 IENPRPGRFNREKAVALGVPPGPLFSKLQKGNPVEAGGKVVRPEEVMGTPRPGRTIVYSG 207
Query: 254 DT--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
DT + R+AD +LI + +F DEM+ E A++ H+ E+ AK +
Sbjct: 208 DTRPCEAVLEASRDAD-----LLIHDGSFA-DEMA-EWAEESMHSTAGEVAALAKEAGVR 260
Query: 312 AVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVV 343
++LTH SSRY +D+ + +LK KV V+
Sbjct: 261 KLVLTHISSRY-TDDV-EPILKDSKKVFENVI 290
>sp|B2G6S0|RNZ_LACRJ Ribonuclease Z OS=Lactobacillus reuteri (strain JCM 1112) GN=rnz
PE=3 SV=1
Length = 309
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + H + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKMAH--NYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>sp|A5VJA0|RNZ_LACRD Ribonuclease Z OS=Lactobacillus reuteri (strain DSM 20016) GN=rnz
PE=3 SV=1
Length = 309
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP ++SR +P TI+ P IK V+ ++ S L+
Sbjct: 59 IFITHLHGDHIFGLPGLLSSRSFQGGTEPLTIYGPVGIKRYVQTSLQVSES----RLSYP 114
Query: 178 LVALDVGETYEMRND----IVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQ----- 221
L +++ + E+ ND ++ R K H I GY I L +KL++Q
Sbjct: 115 LHFVEITDDGELFNDHGFRVIAR--KLDHKIACFGYRIEEADHPGELQVEKLREQKVPSG 172
Query: 222 --YIHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDT--TSEFMLNPRNADALRAK 272
Y LK GK + ++ D I +P+ +A GDT T +L +NAD
Sbjct: 173 PIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNAD----- 227
Query: 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+L+ E+TF DE + H + H+ + E AK K +LL H S+RY
Sbjct: 228 VLVHESTFAKDETKMAH--NYYHSTSKQAAEIAKKAGVKKLLLNHISARY 275
>sp|Q5JE70|RNZ_PYRKO Ribonuclease Z OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnz PE=3 SV=1
Length = 314
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH G+P + + L++ KP I+ P + V+ L + G D
Sbjct: 57 IFITHFHGDHYLGIPALIQTMNLWDRQKPLHIYGPKYTFQFVQNLL----NSGFFRPGFD 112
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI-------YLLRKKLKKQYIHLKGKQI 230
+ ++GET D + FK H IP+ GYV L++KL ++Y +G +
Sbjct: 113 IHVHELGETRLKFGDYEIWSFKVEHGIPALGYVFKEKDRRGKFLKEKL-REYGLEEGPIL 171
Query: 231 EKLKKSG-VEITDIILSPE-----------VAFTGDTTSEFMLNPRNADAL---RAKILI 275
KL++ G +E I+ E + +TGDT P L RA +LI
Sbjct: 172 GKLEREGKIEWNGRIIRLEDVTGPRRKGLKIVYTGDT------EPCERVKLFSERADLLI 225
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EAT+L+ + + H+ + E + A+ + K + L H + RY ED + LK+
Sbjct: 226 HEATYLN---PGDRGDSY-HSTVEEACDTARRAKVKLLALFHRAFRYSYEDYVEEALKIC 281
Query: 336 SKVSAKVV 343
+ + V
Sbjct: 282 ESLGVRAV 289
>sp|Q9KC61|RNZ_BACHD Ribonuclease Z OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnz PE=3 SV=1
Length = 309
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPT-IFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR + P ++ P I+ VE ++ + EL ++
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGENPLFLYGPKGIRSFVETALQVSNTHVKYELTIE 118
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQYIH------ 224
+ + G + V HV+P + + LL +LK + +
Sbjct: 119 EFS-EPGLLFH-EEGFKVETILLDHVMPCYAFKVTEDDRPGELLVDRLKAKGVPPGPLYR 176
Query: 225 --LKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITEA 278
+G+ +E +E + P+ GDT L P A +LI EA
Sbjct: 177 KIQQGETVELPTGERLEANAFLGPPKRGRSFVLAGDTRPVKELIPF---AKNVNVLIHEA 233
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
TFLDD+ HA ++GH+ +++ I+ AK ++LTH SSRYH
Sbjct: 234 TFLDDKKG--HAHEYGHSTMADAIQLAKQANVDHLILTHISSRYH 276
>sp|Q8EQ58|RNZ_OCEIH Ribonuclease Z OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rnz PE=3 SV=1
Length = 306
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNL 176
+FITH H DHI GLP +++SR + +P I+ P IKE VE + ++ + +
Sbjct: 59 IFITHLHGDHIYGLPGFLSSRSFQSGENQPLCIYGPIGIKEFVESTLRLSQTNLTYPITI 118
Query: 177 DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKK-------QY 222
+ D G +E N+++V K H I S GY I LL KLK+ Y
Sbjct: 119 KEITED-GNLFET-NEMMVETKKLQHGIDSYGYRIKEKDKPGELLVDKLKQIGIAPGPIY 176
Query: 223 IHLKGKQIEKLKKSGVEITDIILSPE-----VAFTGDTTSEFMLNP--RNADALRAKILI 275
+K +I L + + +L P ++ GDT P + +D IL+
Sbjct: 177 QQIKENEITTLDNGSIIYRNDVLGPAKKGKVISILGDTRYSIDHIPFIKFSD-----ILV 231
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327
E+TF D+ + A ++ H+ + + AK + LTH SSRY EDI
Sbjct: 232 HESTFTQDKELL--AFEYNHSTNVQAAKLAKEANINKLYLTHVSSRYQAEDI 281
>sp|P60197|RNZ_STAAN Ribonuclease Z OS=Staphylococcus aureus (strain N315) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|P60196|RNZ_STAAM Ribonuclease Z OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=rnz PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|A5IT32|RNZ_STAA9 Ribonuclease Z OS=Staphylococcus aureus (strain JH9) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|A6U1X3|RNZ_STAA2 Ribonuclease Z OS=Staphylococcus aureus (strain JH1) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|A7X2M2|RNZ_STAA1 Ribonuclease Z OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=rnz PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|A8Z2D7|RNZ_STAAT Ribonuclease Z OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=rnz PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|A6QH51|RNZ_STAAE Ribonuclease Z OS=Staphylococcus aureus (strain Newman) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q5HFR8|RNZ_STAAC Ribonuclease Z OS=Staphylococcus aureus (strain COL) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q2FY67|RNZ_STAA8 Ribonuclease Z OS=Staphylococcus aureus (strain NCTC 8325) GN=rnz
PE=3 SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q2FGM9|RNZ_STAA3 Ribonuclease Z OS=Staphylococcus aureus (strain USA300) GN=rnz PE=3
SV=1
Length = 306
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|C5D428|RNZ_GEOSW Ribonuclease Z OS=Geobacillus sp. (strain WCH70) GN=rnz PE=3 SV=1
Length = 308
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI GLP + SR P TI+ P I+ +E + S ++ +L
Sbjct: 59 IFITHLHGDHIFGLPGLLGSRSFQGGDTPLTIYGPKGIQAFIE--ISLSVSYTRLKYDLQ 116
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLK---------KQ 221
+V ++ G +E +V+ + H IPS G+ + LL KLK Q
Sbjct: 117 VVEIEEGTIFEDERFLVIAK-QLDHGIPSYGFRVVEKDLPGTLLVDKLKVLGIRPGPIYQ 175
Query: 222 YIHLKGKQIEKLKKSGVEITDIILSPE----VAFTGDTTSEFMLNPRNADALRAKILITE 277
I L GK ++ + ++ D + P+ V GDT A A +L+ E
Sbjct: 176 QIKL-GKTVQLDNGTVIDGRDFVGPPQKGRIVTILGDTR---YCEASVELAKEADVLVHE 231
Query: 278 ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
ATF ++ ++ H + H+ + E AK K ++LTH SSRY
Sbjct: 232 ATFAAEDSALAH--DYFHSTAVQAAEVAKLAGVKRLILTHISSRYQ 275
>sp|Q6GGJ4|RNZ_STAAR Ribonuclease Z OS=Staphylococcus aureus (strain MRSA252) GN=rnz
PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q2YYA2|RNZ_STAAB Ribonuclease Z OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=rnz PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H IPS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPIVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q5KXG8|RNZ_GEOKA Ribonuclease Z OS=Geobacillus kaustophilus (strain HTA426) GN=rnz
PE=3 SV=1
Length = 307
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 39/252 (15%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DH+ GLP + SR + + P T+F P I+ VE + + ELN
Sbjct: 59 IFITHLHGDHLFGLPGLLGSRSFQSGETPLTVFGPKGIRSFVETALAVSGTKLRYELN-- 116
Query: 178 LVALDVGETY-EMRNDIVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQ-------Y 222
+V +D G + + R ++ + + H +PS G+ + LL ++L+ Y
Sbjct: 117 IVEIDEGVIFDDERFSVIAK--RLDHGMPSYGFRVVEKDLPGPLLVERLQALGVRPGPIY 174
Query: 223 IHLK-GKQIEKLKKSGVEITDIILSPE----VAFTGDTT-SEFMLN-PRNADALRAKILI 275
+K GK + + ++ + + P+ VA GDT E + R+AD +++
Sbjct: 175 QEIKQGKTVVLDDGTVIDGREFVGPPQKGRIVAVLGDTRFCEAAIELARDAD-----VVV 229
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQ 335
EATF E + H + H+ ++ E A+ K ++LTH SSRY E Q V + +
Sbjct: 230 HEATFAAAEQRLAH--DYFHSTTTDAAEVARRAGAKRLILTHISSRYQGEAALQLVAEAR 287
Query: 336 SKVSAKVVPLTE 347
S V P TE
Sbjct: 288 S-----VFPNTE 294
>sp|Q8NWE6|RNZ_STAAW Ribonuclease Z OS=Staphylococcus aureus (strain MW2) GN=rnz PE=3
SV=1
Length = 306
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H +PS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGVPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q6G960|RNZ_STAAS Ribonuclease Z OS=Staphylococcus aureus (strain MSSA476) GN=rnz
PE=3 SV=1
Length = 306
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 42/257 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + +FITH H DHI GLP ++SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK VE + +L LN + +++ + +D V +H +PS GY +
Sbjct: 96 GIKAYVE----MSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGVPSYGYRVM 151
Query: 213 -------LLRKKLKK-------QYIHLKGKQIEKLKKSGVEITDI----ILSPEVAFTGD 254
+ + LK +Y +K + + D P VA GD
Sbjct: 152 APETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGD 211
Query: 255 T--TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKA 312
T S + R+AD +++ EAT++D E + A + H+H+ ++ K K
Sbjct: 212 TKPCSNERVISRDAD-----VMVHEATYIDGEKHL--ANNYHHSHIEDVFALIKEANVKR 264
Query: 313 VLLTHFSSRYHIEDIRQ 329
L+TH S+RY+ EDI +
Sbjct: 265 TLITHLSNRYNTEDINE 281
>sp|Q6LYT2|RNZ_METMP Ribonuclease Z OS=Methanococcus maripaludis (strain S2 / LL) GN=rnz
PE=3 SV=1
Length = 308
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 109/259 (42%), Gaps = 57/259 (22%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPS 154
FD G R I + N +FITH H DH+ GLP + S K P I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E N+ V + H +P+ YV
Sbjct: 93 TVKMIEHILGVGYHSIDYPINVHEISSKTPERIIFTNNYEVFSYPVVHSVPALAYVF--- 149
Query: 215 RKKLKKQYIHLKGKQIEKLKKSGVEI----------------------TDIILSPE---- 248
K++KK + L EK+KK G+EI D+ L P+
Sbjct: 150 -KQVKKPRMDL-----EKVKKLGIEIGPDLKRLKDGFNVELNGEIITLNDVTLPPKKGIC 203
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
V ++GDT +EF+ L+ LI EATF D+ +A++ H+ ++ +
Sbjct: 204 VGYSGDTIPLKEFAEFL------KELKCNTLIHEATF--DKTMERNAKETLHSTATDALN 255
Query: 304 NAKWIRNKAVLLTHFSSRY 322
AK VLLTH S+RY
Sbjct: 256 IAKLSGVSTVLLTHISARY 274
>sp|Q49XV1|RNZ_STAS1 Ribonuclease Z OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=rnz PE=3 SV=1
Length = 306
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 54/283 (19%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPP 153
FD+G I + + +FITH H DHI GLP + SR KP T+ P
Sbjct: 36 FDVGEGTQHQILHHSIKLGKVDHIFITHMHGDHIFGLPGLLTSRSFQGGEGKPLTLIGPK 95
Query: 154 SIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY 212
IK +E + S +LN + +++ +N+ V +H IPS GY I
Sbjct: 96 GIKAYIETTLRLSES----KLNYPITYIEIENHLSYQNNGFNVEAHMLNHGIPSFGYRIE 151
Query: 213 LLRKKLKKQYIHLKG------------KQIEKLKKSGVEIT------DIILSPEVAFTGD 254
K LK K E + +G+ D + P +A GD
Sbjct: 152 APYTSGKIDVSALKEIGLEPGPKYQDVKNNETFEYNGIIYNSKDFKGDAVKGPVIAIFGD 211
Query: 255 TTSEFMLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEI---IENAKWIR 309
T + +N + A A +++ E+T+++ + S+ A + H+H+ ++ IENA
Sbjct: 212 T-----MPCQNEEIIADHANVMVHESTYIEGDKSL--ANNYHHSHIEDVFTLIENA---H 261
Query: 310 NKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352
L+TH S+RY IE++ L+S +P T FK V
Sbjct: 262 VDYSLITHMSNRYTIEEVETISKSLKS------LPTTPPFKFV 298
>sp|B9LQT0|RNZ_HALLT Ribonuclease Z OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM
5036 / JCM 8891 / ACAM 34) GN=rnz PE=3 SV=1
Length = 310
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSI 155
FD G R + + + +F++H H DH+ G+P V + G + +P TI PP
Sbjct: 35 FDCGEGTQRGMMRFGTGFGIDHLFVSHLHGDHVLGIPGLVQTLGFNDRAEPLTIHCPPGT 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI---- 211
++D+ L +H + + + ++ GE + VR F+T H SQGYV+
Sbjct: 95 EDDLHDL--VHAVGHDPAFQIRIESVAPGEVALDADGYEVRAFETVHRTKSQGYVLEEDD 152
Query: 212 ---YLLRKKLKKQYIHL--------KGKQIEKLKKSGVEITDIILSP----EVAFTGDTT 256
R K ++ + + +G+ +E S VE ++ P + +T DT
Sbjct: 153 RPGRFDRPKAEELGVPVGPKFGRLHEGEPVEAEDGSIVEPDQVVGPPRPGRKFVYTADT- 211
Query: 257 SEFMLNPRN---ADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
PR A A A +L+ +ATF DD + A+ H+ E A+ K +
Sbjct: 212 -----RPREGTVAVAEDADLLVHDATFADDME--DRARDTAHSTGREAGSVAERAGAKRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>sp|O29323|RNZ_ARCFU Ribonuclease Z OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16
/ DSM 4304 / JCM 9628 / NBRC 100126) GN=rnz PE=3 SV=1
Length = 306
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 33/226 (14%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL 178
+FITH H DH GL + + L N + + V E + LFE + G +LN D+
Sbjct: 58 IFITHLHTDHFIGLFGLIETMSL-NERSRELNVYSPRAEVLRALFE---AFGYDQLNYDI 113
Query: 179 VALDVGETYEMRND-IVVRPFKTHHVIPSQGYVIY-------LLRKKLKKQY------IH 224
++ + E++ D V F+T H++ S GY I R+K +K+ ++
Sbjct: 114 RVRELKDGEEVKFDGFKVVAFRTEHIVKSVGYAIIENDRRGKFNREKAEKELGIPPGPLY 173
Query: 225 LKGKQIEKLKKSGVEIT-DIILSPE-----VAFTGDT--TSEFMLNPRNADALRAKILIT 276
K + E + G IT D++L + V +TGD+ T + RNAD ILI
Sbjct: 174 AKLARGESIVWKGRTITPDMVLGEKRRGRKVVYTGDSRPTKRTVEIARNAD-----ILIH 228
Query: 277 EATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
+A+F E + A + GH+ E E A+ K ++LTH S+RY
Sbjct: 229 DASF--KEELKDWAIESGHSTAKEAAEVAREANVKKLILTHISTRY 272
>sp|A6VFJ7|RNZ_METM7 Ribonuclease Z OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnz PE=3 SV=1
Length = 310
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 41/251 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGIPGLMQSIAFQGRTKPLNIYGPKE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIENILNVGYHSIDYPINVYEISAKSPEKIISSDNYEVFSFPVVHSVPALAYVFKQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK +E+ I++P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFNIELNGKIITPDDVTVPPKKGICVGYSGDTI 211
Query: 257 -----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+EF+ L+ LI EATF D+ ++A++ H+ +S+ + AK
Sbjct: 212 PLNEFAEFL------KELKCTTLIHEATF--DKSMDKNAKETLHSTVSDALNIAKLSGVN 263
Query: 312 AVLLTHFSSRY 322
V+LTH S+RY
Sbjct: 264 TVILTHISARY 274
>sp|A4FXT9|RNZ_METM5 Ribonuclease Z OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnz PE=3 SV=1
Length = 314
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 113/251 (45%), Gaps = 41/251 (16%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DH+ G+P + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHVLGIPGLLQSIAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ ++ + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMIKNILNVGYHSIDYPINVYEISSKTSEKIISTDNYDVFSFPVVHSVPAVAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEITDIILSPE-----------VAFTGDTT 256
+K K+ K I + G +++LK VE+ I++PE V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGYNVELNGKIITPEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNAD---ALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNK 311
+EF AD L+ ILI EATF D+ ++A++ H+ + + + AK
Sbjct: 212 PLNEF------ADFLKELKCTILIHEATF--DKTMDKNAKETLHSTVHDALNIAKRSGAN 263
Query: 312 AVLLTHFSSRY 322
V+LTH S+RY
Sbjct: 264 TVILTHISARY 274
>sp|C4L3C2|RNZ_EXISA Ribonuclease Z OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b)
GN=rnz PE=3 SV=1
Length = 301
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 29/224 (12%)
Query: 119 VFITHGHLDHIGGLPMYVASR-GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
V++TH H DH+ GLP ++++R L P T++ P +K+ +E + S ++ L
Sbjct: 56 VWVTHLHGDHVFGLPGFLSTRSALDGTAPLTVYGPKGLKKWLEATLRVTGS--HLGYELT 113
Query: 178 LVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVI------YLLRKKLKKQY------IHL 225
+ G+T+ +++D +V K H PS G+ I +LR L ++ I+
Sbjct: 114 VTEYSDGDTF-IQDDHLVTVRKLEHRFPSFGFRIDGPEKPGMLRVDLVRELGVPSGPIYR 172
Query: 226 KGKQIEKLKKSGVE------ITDIILSPEVAFTGDTTSEFMLNPRN-ADALRAKILITEA 278
K+ ++ + G +T+ I VA GDT N R AD A +L+ EA
Sbjct: 173 TIKESDRFEFEGKWYDSKEYVTEPIPGKIVAILGDTIP--CENARKLADG--ADLLVHEA 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
TF++ E ++ A+++GH+ E A +++TH S+RY
Sbjct: 229 TFMEAEQAL--ARKYGHSTTREATALANACAVGKLIVTHISARY 270
>sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnz PE=3 SV=1
Length = 322
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 56/259 (21%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R + + N +FI+H H DHI GL + S G +P I+ PP
Sbjct: 33 FDCGEGTQRQMIYTDISPMKINNIFISHLHGDHILGLAGLLQSIGFNGRTEPINIYGPPE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMR----NDIVVRPFKTHHVIPSQGYV 210
IK +E + +I G +N + ++ M+ + + +H IP Y+
Sbjct: 93 IKNTIENILKI----GYHSINFKITVHEINSKKPMKIIDSEKYMAYAYPVNHSIPCYAYI 148
Query: 211 IYLLRKKLKKQYIHLK---------GKQIEKLK-------KSGVEI--TDIILSPE---- 248
+ K+ KK ++LK G ++ LK K+G I D++L P+
Sbjct: 149 L----KEKKKPQLNLKKAMELGVEVGPDLKSLKDGNEVKLKNGKIIYPNDVLLPPKDSMC 204
Query: 249 VAFTGDTT-----SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303
VA++GDT EF+ +++ +LI EATF + + +A + H+ + + +
Sbjct: 205 VAYSGDTMPIEDFGEFL------NSIGCTVLIHEATFGSSKKN--NAVETMHSTIEDAVN 256
Query: 304 NAKWIRNKAVLLTHFSSRY 322
K V+LTH S+RY
Sbjct: 257 IGKIACVDTVILTHISARY 275
>sp|Q3IRM5|RNZ_NATPD Ribonuclease Z OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnz PE=3 SV=1
Length = 308
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 40/249 (16%)
Query: 104 FDIGRCPTRAIQQ-------NFVFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSI 155
FD G R + + + FITH H DHI GLP + + + + P +++VP
Sbjct: 35 FDCGEGTQRQMMRFGTGFAVSKAFITHLHGDHILGLPGLLQTMDFNDREEPLSVYVPSGK 94
Query: 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLR 215
+ ++ L I + G + + + G+ +D +R F+T H S GY +
Sbjct: 95 QAELRDL--IDTAAGAPSFPVHVNGVSDGQVVVDADDYEIRAFETDHDARSLGYALIEAS 152
Query: 216 KKL----------------KKQYIHLKGKQIEKLKKSGVEITDIILSP----EVAFTGDT 255
+K K Q +H G+ +E + VE ++ P V +TGDT
Sbjct: 153 RKGRFDRERAEELGVPVGPKFQQLH-AGEAVELEDGTVVEPEQVVGDPRPGRRVVYTGDT 211
Query: 256 --TSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAV 313
T + NAD +LI +ATF D + + A + H+ +E + A + +
Sbjct: 212 RPTDRTVTVAENAD-----LLIHDATFATD--NADRAARTAHSTAAEAADIASRADARRL 264
Query: 314 LLTHFSSRY 322
L H SSRY
Sbjct: 265 ALVHISSRY 273
>sp|Q4J9A4|RNZ_SULAC Ribonuclease Z OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnz
PE=3 SV=1
Length = 292
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 34/228 (14%)
Query: 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVE 173
++ N + I+H H DH+ GLP + + +Y+ + + + P+ +D K H
Sbjct: 51 MKLNLIGISHLHGDHVLGLPGIIQTMAMYSRQQKLLLMGPTTLQDYLKSSSKHTYF-KPG 109
Query: 174 LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK------KLKKQYIHLKG 227
+ + ++YE +N + + F+T H I S G++I K +LKK+ I
Sbjct: 110 FETEFI-----QSYEDQN-LTITTFRTCHTIESYGFLIKEKDKTKVDAERLKKEGI-TDW 162
Query: 228 KQIEKLKKSG-VEITDIILSPE----------VAFTGDTT-SEFMLNPRNADALRAKILI 275
+ I KLK+ VEI + PE +A+TGDT + +LN +LI
Sbjct: 163 RIIRKLKEGKRVEIDTKVFLPEDYLYVKKGLSIAYTGDTAPCDSVLNAIKG----VDLLI 218
Query: 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYH 323
++TFL++ A +GH++ ++ E A K + L H S RY
Sbjct: 219 HDSTFLNE----REAHDYGHSNCTDAAEIASKADVKRLALYHISGRYQ 262
>sp|A9AB37|RNZ_METM6 Ribonuclease Z OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnz PE=3 SV=1
Length = 308
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 111/248 (44%), Gaps = 35/248 (14%)
Query: 104 FDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154
FD G R I + N +FI+H H DHI GLP + S KP I+ P
Sbjct: 33 FDCGENTQRQIIFTDVSPMKINNIFISHLHGDHILGLPGLLQSVAFQGRTKPLNIYGPEE 92
Query: 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLL 214
+ +E + + + +N+ ++ E ++ V F H +P+ YV +
Sbjct: 93 TAKMLENILNVGYHSIDYPINVYEISSKTPEKIISTDNYEVYSFPVVHSVPALAYVFRQV 152
Query: 215 RK------KLKKQYIHLKGKQIEKLKKS-GVEIT-------DIILSPE----VAFTGDTT 256
+K K+ K I + G +++LK VE+ D+ L P+ V ++GDT
Sbjct: 153 KKPRMDLEKVNKLGIEI-GPDLKRLKDGFSVELNGKIITLEDVTLPPKKGICVGYSGDTI 211
Query: 257 --SEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVL 314
+EF R L+ LI EATF D+ ++A++ H+ + + + AK V+
Sbjct: 212 PLNEFAEFLRE---LKCTTLIHEATF--DKTMDKNAKETLHSTVHDALNIAKLSGVNTVI 266
Query: 315 LTHFSSRY 322
LTH S+RY
Sbjct: 267 LTHISARY 274
>sp|O27859|RNZ_METTH Ribonuclease Z OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnz PE=3 SV=1
Length = 307
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 119 VFITHGHLDHIGGLPMYVASRGLYNLKPP-TIFVPPSIKEDVEKLFEIHRSLGNVELNLD 177
+FITH H DHI G+P + S G + P I+ PP I E L E +G L+ D
Sbjct: 57 IFITHLHGDHILGIPGMIQSMGFRGREEPLDIYGPPGIHE----LHECIMKMGYFTLDFD 112
Query: 178 LVALDV-GETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKKQYIHLK---GKQIE 231
+ +V G T +D V H + + Y ++ L+++ I L G
Sbjct: 113 INVHEVRGGTVVEEDDYRVTSAPASHSVFNLAYCFEEKKRPRFLREKAIALGLKPGPAFG 172
Query: 232 KLKKS-GVEITDIILSPE-----------VAFTGDTT-SEFMLNPRNADALRAKILITEA 278
KL + V + D I+ PE V ++GDT E ++ A A++LI E+
Sbjct: 173 KLHRGIPVRVGDRIIMPEEVLGSPRKGVKVCYSGDTRPCESVIKL----AEGAELLIHES 228
Query: 279 TFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY 322
T + S + A + GH+ E E A+ K ++LTH S+RY
Sbjct: 229 TL--EAGSEDKAAESGHSTAREAAEVARSAGVKRLILTHLSTRY 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,299,739
Number of Sequences: 539616
Number of extensions: 5527999
Number of successful extensions: 18210
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 17772
Number of HSP's gapped (non-prelim): 441
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)