Query 018507
Match_columns 355
No_of_seqs 244 out of 2404
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 1.1E-40 2.3E-45 307.4 13.8 239 43-353 3-252 (252)
2 PRK05184 pyrroloquinoline quin 100.0 2.3E-40 5.1E-45 312.1 13.0 256 43-353 3-302 (302)
3 TIGR02649 true_RNase_BN ribonu 100.0 1.7E-38 3.6E-43 300.5 23.6 253 90-352 15-302 (303)
4 PRK11244 phnP carbon-phosphoru 100.0 3.6E-39 7.8E-44 296.9 17.7 239 42-352 2-249 (250)
5 TIGR02108 PQQ_syn_pqqB coenzym 100.0 1.5E-39 3.3E-44 305.7 14.2 251 44-353 3-302 (302)
6 TIGR02651 RNase_Z ribonuclease 100.0 3.2E-37 6.9E-42 291.1 23.8 251 90-352 16-298 (299)
7 TIGR02650 RNase_Z_T_toga ribon 100.0 6.1E-36 1.3E-40 273.3 21.7 249 83-340 2-266 (277)
8 TIGR03307 PhnP phosphonate met 100.0 1E-35 2.2E-40 272.0 18.4 229 51-351 1-238 (238)
9 COG1234 ElaC Metal-dependent h 100.0 3.7E-34 8.1E-39 268.2 22.7 248 90-353 18-291 (292)
10 PRK02126 ribonuclease Z; Provi 100.0 7E-33 1.5E-37 263.9 22.3 232 99-336 27-330 (334)
11 PRK00055 ribonuclease Z; Revie 100.0 7.6E-30 1.7E-34 236.8 18.1 223 91-353 19-266 (270)
12 KOG2121 Predicted metal-depend 99.9 5.2E-26 1.1E-30 226.0 7.8 233 79-354 441-716 (746)
13 PF12706 Lactamase_B_2: Beta-l 99.9 1.5E-23 3.2E-28 184.8 17.3 174 101-318 2-194 (194)
14 COG1235 PhnP Metal-dependent h 99.9 6.9E-24 1.5E-28 197.3 7.3 230 42-330 5-247 (269)
15 PRK00685 metal-dependent hydro 99.9 1.1E-20 2.4E-25 171.3 19.5 199 92-353 8-228 (228)
16 TIGR00649 MG423 conserved hypo 99.9 7.1E-21 1.5E-25 188.0 19.6 189 89-322 13-230 (422)
17 PRK04286 hypothetical protein; 99.8 8.5E-21 1.8E-25 178.8 14.0 221 89-347 12-278 (298)
18 COG0595 mRNA degradation ribon 99.8 1.8E-17 3.9E-22 165.8 16.9 205 87-336 19-253 (555)
19 TIGR03675 arCOG00543 arCOG0054 99.7 1.2E-16 2.6E-21 163.7 21.4 204 46-283 134-377 (630)
20 COG1236 YSH1 Predicted exonucl 99.7 2.5E-15 5.4E-20 148.0 20.5 158 90-284 12-194 (427)
21 COG1782 Predicted metal-depend 99.7 2.1E-15 4.6E-20 144.8 18.8 263 46-351 140-449 (637)
22 PRK11709 putative L-ascorbate 99.7 9.9E-15 2.1E-19 140.1 20.5 168 115-333 109-302 (355)
23 KOG1136 Predicted cleavage and 99.5 2.2E-13 4.8E-18 125.1 15.7 160 91-285 16-211 (501)
24 smart00849 Lactamase_B Metallo 99.5 2.4E-13 5.2E-18 117.8 13.5 116 90-212 4-133 (183)
25 PF02112 PDEase_II: cAMP phosp 99.5 2E-12 4.4E-17 122.4 15.8 200 115-348 79-335 (335)
26 PF13483 Lactamase_B_3: Beta-l 99.3 6.2E-12 1.3E-16 108.1 9.2 144 92-317 7-163 (163)
27 PRK11921 metallo-beta-lactamas 99.3 2E-11 4.3E-16 119.7 13.5 110 89-213 30-154 (394)
28 TIGR03413 GSH_gloB hydroxyacyl 99.2 7.5E-11 1.6E-15 108.5 11.6 89 100-212 21-117 (248)
29 KOG1137 mRNA cleavage and poly 99.2 4.6E-11 1E-15 116.2 9.6 157 91-283 26-212 (668)
30 PRK05452 anaerobic nitric oxid 99.2 2E-10 4.2E-15 115.1 13.3 113 88-213 31-158 (479)
31 COG5212 PDE1 Low-affinity cAMP 99.2 3.9E-10 8.5E-15 101.3 12.4 174 115-322 112-317 (356)
32 PF00753 Lactamase_B: Metallo- 99.1 1.8E-10 3.9E-15 99.6 8.6 49 90-138 4-66 (194)
33 PLN02469 hydroxyacylglutathion 99.1 6.1E-10 1.3E-14 102.9 12.4 92 100-213 24-123 (258)
34 PRK10241 hydroxyacylglutathion 99.1 4.7E-10 1E-14 103.3 11.5 90 99-211 22-119 (251)
35 PLN02398 hydroxyacylglutathion 99.1 4.9E-10 1.1E-14 106.4 11.1 110 81-212 76-197 (329)
36 COG2220 Predicted Zn-dependent 99.1 5.1E-09 1.1E-13 96.8 17.5 172 92-319 14-213 (258)
37 KOG1361 Predicted hydrolase in 99.1 8.4E-10 1.8E-14 107.8 10.3 164 115-329 112-279 (481)
38 COG0491 GloB Zn-dependent hydr 98.9 6.9E-09 1.5E-13 94.0 11.4 108 100-213 36-159 (252)
39 PLN02962 hydroxyacylglutathion 98.9 5.5E-09 1.2E-13 96.0 10.6 98 91-212 22-135 (251)
40 COG1237 Metal-dependent hydrol 98.9 8.3E-08 1.8E-12 86.6 14.8 60 94-157 24-96 (259)
41 TIGR00361 ComEC_Rec2 DNA inter 98.9 1.8E-07 3.8E-12 97.8 19.5 186 80-334 439-651 (662)
42 COG2248 Predicted hydrolase (m 98.8 4.2E-08 9.1E-13 87.6 11.9 209 90-336 15-266 (304)
43 KOG0813 Glyoxylase [General fu 98.8 3.6E-08 7.9E-13 89.8 11.7 78 114-213 50-128 (265)
44 KOG1135 mRNA cleavage and poly 98.8 1.4E-07 3E-12 94.4 14.3 152 95-281 20-201 (764)
45 PRK11539 ComEC family competen 98.7 7.5E-07 1.6E-11 94.3 19.1 184 80-335 500-710 (755)
46 COG2333 ComEC Predicted hydrol 98.6 3.9E-06 8.5E-11 78.5 18.3 194 81-335 44-260 (293)
47 COG0426 FpaA Uncharacterized f 98.6 3.3E-07 7.3E-12 87.9 11.0 107 89-210 33-154 (388)
48 KOG0814 Glyoxylase [General fu 98.1 1.4E-05 3.1E-10 67.8 7.3 91 99-213 32-132 (237)
49 KOG3798 Predicted Zn-dependent 97.7 0.00046 9.9E-09 62.1 10.8 157 115-321 132-302 (343)
50 PF13691 Lactamase_B_4: tRNase 97.2 0.00034 7.4E-09 49.9 3.5 39 93-131 13-63 (63)
51 PF14597 Lactamase_B_5: Metall 96.4 0.0059 1.3E-07 52.6 5.3 91 98-212 31-128 (199)
52 COG2015 Alkyl sulfatase and re 95.5 0.012 2.7E-07 57.7 3.6 60 98-158 134-206 (655)
53 KOG1138 Predicted cleavage and 95.2 0.19 4.1E-06 49.8 10.6 127 115-278 96-266 (653)
54 KOG2121 Predicted metal-depend 94.8 0.035 7.7E-07 57.2 4.6 169 98-278 72-274 (746)
55 KOG3592 Microtubule-associated 89.8 0.3 6.4E-06 50.4 3.4 47 91-137 49-103 (934)
56 PF07521 RMMBL: RNA-metabolisi 83.5 1.8 3.9E-05 28.2 3.4 26 293-318 15-40 (43)
57 KOG4736 Uncharacterized conser 45.4 24 0.00052 33.1 3.5 38 98-135 103-145 (302)
58 PF01073 3Beta_HSD: 3-beta hyd 44.7 69 0.0015 29.7 6.6 65 250-317 49-115 (280)
59 PRK09875 putative hydrolase; P 30.3 82 0.0018 29.6 4.6 42 300-348 167-210 (292)
60 COG4074 Mth H2-forming N5,N10- 26.4 78 0.0017 28.6 3.4 57 293-351 17-73 (343)
61 PF08915 tRNA-Thr_ED: Archaea- 25.5 1.7E+02 0.0036 24.4 5.0 40 298-337 60-103 (138)
62 KOG4684 Uncharacterized conser 24.2 35 0.00077 30.3 0.9 17 50-68 74-90 (275)
63 PF07522 DRMBL: DNA repair met 23.8 81 0.0017 24.7 2.8 24 293-316 82-105 (110)
64 KOG1502 Flavonol reductase/cin 22.4 3.2E+02 0.007 26.2 7.0 66 248-317 59-128 (327)
65 smart00854 PGA_cap Bacterial c 20.8 1.4E+02 0.003 26.9 4.1 68 267-334 29-99 (239)
66 COG0156 BioF 7-keto-8-aminopel 20.5 4.2E+02 0.0091 26.1 7.6 82 248-352 102-183 (388)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=1.1e-40 Score=307.36 Aligned_cols=239 Identities=18% Similarity=0.235 Sum_probs=185.4
Q ss_pred cccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe--CCcEEEEecCCCCcccc------
Q 018507 43 NALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRAI------ 114 (355)
Q Consensus 43 ~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i--~~~~iLID~G~~~~~~~------ 114 (355)
.++||||+++|+|+++|.|++|.+|+.+.. |+++|+++ ++..+|||||+++..++
T Consensus 3 ~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~-----------------R~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~ 65 (252)
T PRK02113 3 IRILGSGTSTGVPEIGCTCPVCTSKDPRDN-----------------RLRTSALVETEGARILIDCGPDFREQMLRLPFG 65 (252)
T ss_pred EEEEEeCCCCCeecCCCCCccCCCCCCCCc-----------------ceeeEEEEEECCeEEEEECCchHHHHHHhcCcc
Confidence 458999999999999999999999863322 44667777 56789999999977653
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCC--cCceeEEEcCCCCeeeecCC
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV--ELNLDLVALDVGETYEMRND 192 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~g~~~~i~~g 192 (355)
++|+|||||.|+||++||+.++.. ...++++||+++.+.+.++..+.+....... ...++++++++++.++++ +
T Consensus 66 ~id~I~lTH~H~DH~~gl~~l~~~---~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~ 141 (252)
T PRK02113 66 KIDAVLITHEHYDHVGGLDDLRPF---CRFGEVPIYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVN-H 141 (252)
T ss_pred ccCEEEECCCChhhhCCHHHHHHh---ccCCCceEEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEEC-C
Confidence 699999999999999999988642 2346889999999988887654221100000 013578889999999996 9
Q ss_pred eEEEEEEcCCC-CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCC
Q 018507 193 IVVRPFKTHHV-IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRA 271 (355)
Q Consensus 193 ~~v~~~~~~H~-~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~ 271 (355)
++|+++++.|+ .+++||++. +++|+||+.+. .....+.++++
T Consensus 142 ~~i~~~~~~H~~~~~~gy~i~-----------------------------------~i~y~~Dt~~~--~~~~~~~~~~~ 184 (252)
T PRK02113 142 TEVTPLRVMHGKLPILGYRIG-----------------------------------KMAYITDMLTM--PEEEYEQLQGI 184 (252)
T ss_pred eEEEEEEecCCCccEEEEEeC-----------------------------------CEEEccCCCCC--CHHHHHHhcCC
Confidence 99999999997 689999993 69999999852 22234567899
Q ss_pred CEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccc
Q 018507 272 KILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351 (355)
Q Consensus 272 d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~ 351 (355)
|+||+|+++.. ...+|+++++++++++++++|++++||+++++.. .. ++.+.++.++.+|+|||++
T Consensus 185 DlLi~e~~~~~--------~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~~~--~~----~~~~~~~~~~~~A~Dg~~~ 250 (252)
T PRK02113 185 DVLVMNALRIA--------PHPTHQSLEEALENIKRIGAKETYLIHMSHHIGL--HA----DVEKELPPHVHFAYDGLEI 250 (252)
T ss_pred CEEEEhhhcCC--------CCCCcCCHHHHHHHHHHhCCCEEEEEcccccchh--HH----HHHHhCCCCceeccCceEE
Confidence 99999998632 3568999999999999999999999999998752 11 2223345578999999987
Q ss_pred cc
Q 018507 352 VY 353 (355)
Q Consensus 352 ~~ 353 (355)
.+
T Consensus 251 ~~ 252 (252)
T PRK02113 251 IF 252 (252)
T ss_pred eC
Confidence 53
No 2
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=2.3e-40 Score=312.15 Aligned_cols=256 Identities=15% Similarity=0.176 Sum_probs=182.3
Q ss_pred cccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe--CCc-EEEEecCCCCcccc-----
Q 018507 43 NALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PEL-KCAFDIGRCPTRAI----- 114 (355)
Q Consensus 43 ~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i--~~~-~iLID~G~~~~~~~----- 114 (355)
..+||||+++|+|+++|+|++|++||..+.+. ..|.++|++| ++. .+|||||++++.|+
T Consensus 3 lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~-------------~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~ 69 (302)
T PRK05184 3 IIVLGSAAGGGFPQWNCNCPNCRGARAGTIRA-------------KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPA 69 (302)
T ss_pred EEEEEecCCCCCCcCCCCchhchhhhcCCCcC-------------CcccccEEEEEcCCCEEEEEECChhHHHHHHhchh
Confidence 45899999999999999999999999853211 1245677777 233 59999999987542
Q ss_pred ----------ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCC
Q 018507 115 ----------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVG 184 (355)
Q Consensus 115 ----------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g 184 (355)
+||+|||||.|+||+.||+.|+ ...+++||+++.+.+.+++.+..+..... ...++++++..+
T Consensus 70 ~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~------~~~~l~Vyg~~~~~~~l~~~~~~f~~~~~-~~~~~~~~i~~~ 142 (302)
T PRK05184 70 LQPARGLRDTPIAAVVLTDGQIDHTTGLLTLR------EGQPFPVYATPAVLEDLSTGFPIFNVLDH-YGGVQRRPIALD 142 (302)
T ss_pred cCccccCCcccccEEEEeCCchhhhhChHhhc------cCCCeEEEeCHHHHHHHHhcCCccccccc-ccceeeEEecCC
Confidence 4899999999999999999873 25789999999999888764322211111 134577888888
Q ss_pred Ceeeec--CCeEEEEEEcCCC-------------CCCeEEEEE-EcchhhhhhhcccchHHHHHHHhcCceecceeeCCe
Q 018507 185 ETYEMR--NDIVVRPFKTHHV-------------IPSQGYVIY-LLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPE 248 (355)
Q Consensus 185 ~~~~i~--~g~~v~~~~~~H~-------------~~~~g~~i~-~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~ 248 (355)
+.++++ ++++|+++++.|. .+++||+|+ +.+ +++
T Consensus 143 ~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~------------------------------g~~ 192 (302)
T PRK05184 143 GPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRAT------------------------------GKR 192 (302)
T ss_pred CceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCC------------------------------CcE
Confidence 888884 3899999999764 569999996 221 137
Q ss_pred EEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccH------HHHhhcCCCcH---HHHHHHHHHcCCCeEEEEecC
Q 018507 249 VAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI------EHAQQHGHTHL---SEIIENAKWIRNKAVLLTHFS 319 (355)
Q Consensus 249 i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~------~~a~~~~H~~~---~~a~~~~~~~~~k~~vltH~s 319 (355)
++|++|+.. ..++..+.++++|+||+||++....... +.....+|++. .++++.+++.++|+++|||++
T Consensus 193 ~~y~tD~~~--~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~ 270 (302)
T PRK05184 193 LFYAPGLAE--VTDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHIN 270 (302)
T ss_pred EEEECCCCC--CCHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcC
Confidence 999988854 2233456788999999999964432100 01124578885 457888888899999999999
Q ss_pred CCCChhHHH-HHHHHhcccccCceeeccccccccc
Q 018507 320 SRYHIEDIR-QAVLKLQSKVSAKVVPLTEGFKSVY 353 (355)
Q Consensus 320 ~~~~~~~l~-~~~~~~~~~~~~~v~~a~dGl~~~~ 353 (355)
|.++..... +..+++. ..++.+|||||++.+
T Consensus 271 h~~~~~~~~~~~~~~~~---~~~~~~A~DGm~i~l 302 (302)
T PRK05184 271 NTNPILDEDSPERAELE---AAGIEVAHDGMEIEL 302 (302)
T ss_pred CCChhhccCCHHHHHHH---hCCCEEccCCcEEeC
Confidence 875431100 0111111 157899999999863
No 3
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=1.7e-38 Score=300.49 Aligned_cols=253 Identities=25% Similarity=0.287 Sum_probs=199.7
Q ss_pred CceEEEEeC------CcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcCC-CCCCEEecChh
Q 018507 90 GHETCVIIP------ELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPS 154 (355)
Q Consensus 90 ~~~s~~~i~------~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~~-~~~~~Iy~~~~ 154 (355)
++.+|++++ +..+|||||+++++++ +||+|||||.|+||++|++.++..+.+.+ .++++||+|+.
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~ 94 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 94 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence 567788883 3689999999988763 59999999999999999999876554433 56889999999
Q ss_pred hHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcch--hh---hhhhcccc-hH
Q 018507 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KL---KKQYIHLK-GK 228 (355)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~--~l---~~~~~~~~-~~ 228 (355)
+.+.++..+....... ...++++++.+++.+..+ +++|+++++.|..+++||+|+.+++ ++ |.+..|+| |+
T Consensus 95 ~~~~l~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~ 171 (303)
T TIGR02649 95 IREFVETALRISGSWT--DYPLEIVEIGAGEILDDG-LRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGP 171 (303)
T ss_pred HHHHHHHHHHhccccc--CCceEEEEcCCCceEecC-CeEEEEEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCCh
Confidence 9988877654322111 234678888888888874 8999999999999999999987653 44 34588995 99
Q ss_pred HHHHHHhcCceec--c------------eeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcC
Q 018507 229 QIEKLKKSGVEIT--D------------IILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHG 294 (355)
Q Consensus 229 ~~~~Lk~~G~~i~--~------------~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~ 294 (355)
|+++||+ |..++ + ...+++|+|+|||.+.+ ...+.++++|+||+||||.++. .+.+..++
T Consensus 172 ~~~~L~~-g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~---~~~~~~~~adlLi~Eat~~~~~--~~~a~~~~ 245 (303)
T TIGR02649 172 LFQELKA-GKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCD---AALDLAKGVDVMVHEATLDITM--EAKANSRG 245 (303)
T ss_pred HHHHhcC-CCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChH---HHHHHhcCCCEEEEeccCChhh--HHHHhhcC
Confidence 9999987 43332 1 12567999999998732 2345778999999999997654 34556789
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeecccccccc
Q 018507 295 HTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352 (355)
Q Consensus 295 H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~ 352 (355)
|+++++|.++++++++++++|||||++|+.+.++...+++++.++ ++.+|+|||++.
T Consensus 246 H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-~~~~a~d~~~~~ 302 (303)
T TIGR02649 246 HSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFN 302 (303)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-CCEecccccEEe
Confidence 999999999999999999999999999987666666777666664 689999999864
No 4
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=3.6e-39 Score=296.95 Aligned_cols=239 Identities=19% Similarity=0.205 Sum_probs=179.2
Q ss_pred CcccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe--CCcEEEEecCCCCccc----cc
Q 018507 42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRA----IQ 115 (355)
Q Consensus 42 ~~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i--~~~~iLID~G~~~~~~----~~ 115 (355)
..++||||+++|+|+++|+|++|++||+.+... ++++|+++ ++..+|||||...... .+
T Consensus 2 ~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~---------------r~~~s~li~~~~~~iLiD~G~~~~~~~~~~~~ 66 (250)
T PRK11244 2 RLTLLGTGGAQGVPVFGCECAACARARRDPAYR---------------RRPCSALIEFNGARTLIDAGLPDLAERFPPGS 66 (250)
T ss_pred EEEEEeccCCCCccCCCccchhhhhhhcCCCCC---------------cceeEEEEEECCCEEEEECCChHHhhcCCccc
Confidence 346899999999999999999999999854332 55667776 5678999999654322 26
Q ss_pred cCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeE-EEcCCCCeeeecCCeE
Q 018507 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL-VALDVGETYEMRNDIV 194 (355)
Q Consensus 116 id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~i~~g~~ 194 (355)
||+|||||.|.||++|+..++. ....+++||++..+... ...+.. . ...++ +.++++++++++ +++
T Consensus 67 i~~i~iTH~H~DHi~gl~~l~~----~~~~~i~i~~~~~~~~~-~~~~~~----~---~~~~~~~~l~~~~~~~~~-~~~ 133 (250)
T PRK11244 67 LQQILLTHYHMDHVQGLFPLRW----GVGDPIPVYGPPDPEGC-DDLFKH----P---GILDFSHPLEPFEPFDLG-GLQ 133 (250)
T ss_pred CCEEEEccCchhhhccHHHHHh----hcCCceeEEeCCchhhH-HHHhcC----c---cccccccccCCCCCeeEC-CEE
Confidence 9999999999999999987742 12467889999876432 222110 0 11233 357788999996 999
Q ss_pred EEEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccc--cCCCC
Q 018507 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD--ALRAK 272 (355)
Q Consensus 195 v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~--~~~~d 272 (355)
|+++++.|+.+++||+|+.++ ++++|+|||...+ ....+. ..++|
T Consensus 134 I~~~~~~H~~~s~g~~i~~~~-------------------------------~~i~ysgDt~~~~--~~~~~~~~~~~~D 180 (250)
T PRK11244 134 VTPLPLNHSKLTFGYLLETAH-------------------------------SRVAYLTDTVGLP--EDTLKFLRNNQPD 180 (250)
T ss_pred EEEEeeCCCcceeEEEEecCC-------------------------------eEEEEEcCCCCCC--HHHHHHHhcCCCC
Confidence 999999999999999998653 3799999998621 111222 25799
Q ss_pred EEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeecccccccc
Q 018507 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352 (355)
Q Consensus 273 ~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~ 352 (355)
+||+||++.+... ...+|++++++++++++++++++++||++++++. +.. +. ..+..++.+|+|||++.
T Consensus 181 lli~e~~~~~~~~-----~~~~H~~~~~a~~~a~~~~~k~lvltH~~~~~~~--~~~---~~-~~~~~~~~~a~DG~~i~ 249 (250)
T PRK11244 181 LLVLDCSHPPQED-----APRNHNDLTTALAIIEVLRPPRVILTHISHQLDA--WLM---EN-AALPSGVEVAYDGMEIG 249 (250)
T ss_pred EEEEeCcCCCCCC-----CCCCCCCHHHHHHHHHhcCCceEEEEcccCCcch--hhh---hh-hhcCCceEEecCccEee
Confidence 9999999976431 3468999999999999999999999999987642 211 11 33456899999999975
No 5
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=1.5e-39 Score=305.68 Aligned_cols=251 Identities=17% Similarity=0.191 Sum_probs=179.6
Q ss_pred ccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe-C-C-cEEEEecCCCCcccc------
Q 018507 44 ALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII-P-E-LKCAFDIGRCPTRAI------ 114 (355)
Q Consensus 44 ~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i-~-~-~~iLID~G~~~~~~~------ 114 (355)
++||||+++|+|+++|+|++|++||+...+. ..|.++++++ . + ..+|||||++++.|+
T Consensus 3 ~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~-------------~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~ 69 (302)
T TIGR02108 3 VVLGSAAGGGFPQWNCNCPNCRGARAGTIGA-------------KARTQSSIAVSADGERWVLLNASPDIRQQIQATPAL 69 (302)
T ss_pred EEEEecCCCCCCcCCCCChhhHHHhcCCCCC-------------ccccccEEEEEeCCCEEEEEECCHHHHHHHHhCccc
Confidence 4799999999999999999999998732211 0134556777 2 3 479999999987653
Q ss_pred ---------ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCC
Q 018507 115 ---------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGE 185 (355)
Q Consensus 115 ---------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~ 185 (355)
+||+|||||.|.||+.||+.|+ ...+++||+++.+++.+++ +..+..+. ...++++.++.++
T Consensus 70 ~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~------~~~~lpVya~~~t~~~L~~-~~~~~~~~--~~~~~~~~i~~~~ 140 (302)
T TIGR02108 70 HPQRGLRHTPIAGVVLTDGEIDHTTGLLTLR------EGQPFTLYATEMVLQDLSD-NPIFNVLD--HWNVRRQPIALNE 140 (302)
T ss_pred ccccCCCcccCCEEEEeCCCcchhhCHHHHc------CCCCceEEECHHHHHHHHh-CCCccccc--hhhccceEecCCC
Confidence 4899999999999999999884 2368999999999998864 22111111 1234556777778
Q ss_pred eeeec----CCeEEEEEEcC--------C--C----CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCC
Q 018507 186 TYEMR----NDIVVRPFKTH--------H--V----IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247 (355)
Q Consensus 186 ~~~i~----~g~~v~~~~~~--------H--~----~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~ 247 (355)
++.++ ++++|++|++. | + .+++||+|+.+. .++
T Consensus 141 ~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~-----------------------------~g~ 191 (302)
T TIGR02108 141 KFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGT-----------------------------TGK 191 (302)
T ss_pred cEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCC-----------------------------CCc
Confidence 88764 25999999998 5 2 479999998641 013
Q ss_pred eEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccH------HHHhhcCCCcHH---HHHHHHHHcCCCeEEEEec
Q 018507 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSI------EHAQQHGHTHLS---EIIENAKWIRNKAVLLTHF 318 (355)
Q Consensus 248 ~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~------~~a~~~~H~~~~---~a~~~~~~~~~k~~vltH~ 318 (355)
+++|++|++. ..++..+.++++|+||+||+|..+..+. +.....+|++.. ++++.+.+.++++++|+|+
T Consensus 192 ~~~y~tD~g~--~~~~~~~~l~~~d~liida~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl 269 (302)
T TIGR02108 192 RLFYIPGCAE--ITDDLKARMAGADLVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHI 269 (302)
T ss_pred EEEEECCCCC--CCHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEec
Confidence 7999999985 2334456788999999999953332111 111345777766 6777777788999999999
Q ss_pred CCCCCh----hHHHHHHHHhcccccCceeeccccccccc
Q 018507 319 SSRYHI----EDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353 (355)
Q Consensus 319 s~~~~~----~~l~~~~~~~~~~~~~~v~~a~dGl~~~~ 353 (355)
||.++. .+..+.+. +.+|.+|||||++.+
T Consensus 270 ~h~~~~~~~~~~~~~~~~------~~~~~~ayDG~~~~l 302 (302)
T TIGR02108 270 NNTNPILDEDSPERAEVE------AAGWEVAYDGMEIVL 302 (302)
T ss_pred CCCCcCCCCCCHHHHHHH------HcCCEEecCCcEEeC
Confidence 998741 12221111 268999999999864
No 6
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=3.2e-37 Score=291.06 Aligned_cols=251 Identities=27% Similarity=0.366 Sum_probs=194.3
Q ss_pred CceEEEEe--CCcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcCC-CCCCEEecChhhHHH
Q 018507 90 GHETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158 (355)
Q Consensus 90 ~~~s~~~i--~~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~~-~~~~~Iy~~~~~~~~ 158 (355)
++++|+++ ++..+|||||+++..++ ++++|||||.|+||++||+.++..+.+.+ .++++||+|+.+.+.
T Consensus 16 r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~ 95 (299)
T TIGR02651 16 RNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEF 95 (299)
T ss_pred CCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHH
Confidence 45667777 56789999999987643 58999999999999999999987654433 458899999999988
Q ss_pred HHHHHHHHHhcCCCcCceeEEEcCCCC-eeeecCCeEEEEEEcCCCCCCeEEEEEEcch--hhh---hhhcccc-hHHHH
Q 018507 159 VEKLFEIHRSLGNVELNLDLVALDVGE-TYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK--KLK---KQYIHLK-GKQIE 231 (355)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~--~l~---~~~~~~~-~~~~~ 231 (355)
++..+..... .....++++++.+++ .+..+ +++|+++++.|..+++||+|+.++. +++ ....++| |++++
T Consensus 96 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~ 172 (299)
T TIGR02651 96 IETSLRVSYT--YLNYPIKIHEIEEGGLVFEDD-GFKVEAFPLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYG 172 (299)
T ss_pred HHHHHHHccc--CCCceEEEEEccCCCceEecC-CEEEEEEEcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHH
Confidence 8776543321 112346778888887 58875 9999999999999999999998753 343 3588997 99999
Q ss_pred HHHhcCceec--------------ceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCc
Q 018507 232 KLKKSGVEIT--------------DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH 297 (355)
Q Consensus 232 ~Lk~~G~~i~--------------~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~ 297 (355)
+||+ |..|+ ....+++++|+|||.+.+ ...+.++++|+||+||||.++. .+.+..++|++
T Consensus 173 ~L~~-g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~---~~~~~~~~~dlLi~E~~~~~~~--~~~~~~~~H~t 246 (299)
T TIGR02651 173 KLKR-GETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCE---EVIEFAKNADLLIHEATFLDED--KKLAKEYGHST 246 (299)
T ss_pred HhhC-CCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChH---HHHHHHcCCCEEEEECCCCchh--HHHHhhcCCCC
Confidence 9998 43333 122367899999998732 2335678999999999998764 34456789999
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeecccccccc
Q 018507 298 LSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSV 352 (355)
Q Consensus 298 ~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~ 352 (355)
+++|++++++.++++++|||||++|.. ..+..++..+. ..++.+|+|||++.
T Consensus 247 ~~~a~~~~~~~~~k~lvltH~s~~~~~--~~~~~~~~~~~-~~~~~~a~dg~~~~ 298 (299)
T TIGR02651 247 AAQAAEIAKEANVKRLILTHISPRYSD--EEELLEEAKKI-FPNTYIAEDFMEIE 298 (299)
T ss_pred HHHHHHHHHHcCCCEEEEEecccccCC--hHHHHHHHHHh-CCCcEEccCccEee
Confidence 999999999999999999999999864 33344444333 35899999999874
No 7
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=100.00 E-value=6.1e-36 Score=273.30 Aligned_cols=249 Identities=19% Similarity=0.175 Sum_probs=202.6
Q ss_pred EEEEeecCceEEEEeCCcEEEEe-cCCCCcccc-----ccCEEEeccCCccccCChHHHHHHhCc--CCCCCCEEecChh
Q 018507 83 IEGVSIGGHETCVIIPELKCAFD-IGRCPTRAI-----QQNFVFITHGHLDHIGGLPMYVASRGL--YNLKPPTIFVPPS 154 (355)
Q Consensus 83 i~~~~~g~~~s~~~i~~~~iLID-~G~~~~~~~-----~id~I~lTH~H~DHi~GL~~l~~~~~~--~~~~~~~Iy~~~~ 154 (355)
+.|.+.+.-+|++.+...++|+| +|.+....+ .++.|||||.|.||++||+.+...+.. .+.+|+.||+|+.
T Consensus 2 ~~g~s~a~~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 2 IIGFFKAAFFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred ceeeechhheEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 34566677899999988999999 998877654 699999999999999999877653322 3467889999999
Q ss_pred hHHHHHHHHHHHHhcCCC-cCceeEEEcCCCCeeeecCC---eEEEEEEcCCCC---CCeEEEEEEcchhhhhhhcccch
Q 018507 155 IKEDVEKLFEIHRSLGNV-ELNLDLVALDVGETYEMRND---IVVRPFKTHHVI---PSQGYVIYLLRKKLKKQYIHLKG 227 (355)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~i~~g---~~v~~~~~~H~~---~~~g~~i~~~~~~l~~~~~~~~~ 227 (355)
+.+.++.++.....++.. ...+++..++.++.+...++ +.|+++++.|.+ +|+||.|.+..+|||.++.+++|
T Consensus 82 ~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~ 161 (277)
T TIGR02650 82 GNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDK 161 (277)
T ss_pred hhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCH
Confidence 998888655444433221 23445566666776666533 899999999986 89999999999999999999999
Q ss_pred HHHHHHHhcC-ceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHH
Q 018507 228 KQIEKLKKSG-VEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAK 306 (355)
Q Consensus 228 ~~~~~Lk~~G-~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~ 306 (355)
+.+++||+.| .+|++....++++|+|||.++. .+++.++|+||+||||.++.. ...++|++..++.++++
T Consensus 162 ~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~-----~~~a~~adlLIhEaTf~d~~~----~~~~gH~t~~eaa~~A~ 232 (277)
T TIGR02650 162 KEARLLKEEGGDDFTREEHHKILLIIGDDLAAD-----DEEEEGGEELIHECCFFDDAD----DRRKKHAAADDEMEESK 232 (277)
T ss_pred HHHHHHHHhCCccccccccCcEEEEeCCCCCCC-----hHHhcCCCEEEEecccccccc----cccCCCCCHHHHHHHHH
Confidence 9999999987 8899999999999999999853 257789999999999988752 13578999999999999
Q ss_pred HcCCCeEEEEecCCCCChhHHHHHHHHhcccccC
Q 018507 307 WIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSA 340 (355)
Q Consensus 307 ~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~ 340 (355)
+.++++++|||+|.+|..+.+++..+++..+++.
T Consensus 233 ~a~vk~LiLtH~Ssry~~~~~~~~~~~~~~~~~~ 266 (277)
T TIGR02650 233 KAAGKKKIILHHISRRIIRILKSIIKKREEEMDD 266 (277)
T ss_pred HcCCCEEEEEeecccccHHHHHHHHHHHHhhcCc
Confidence 9999999999999999876667777777555443
No 8
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=100.00 E-value=1e-35 Score=272.02 Aligned_cols=229 Identities=19% Similarity=0.208 Sum_probs=167.0
Q ss_pred hHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEe--CCcEEEEecCCCCccc----cccCEEEeccC
Q 018507 51 LSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVII--PELKCAFDIGRCPTRA----IQQNFVFITHG 124 (355)
Q Consensus 51 ~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i--~~~~iLID~G~~~~~~----~~id~I~lTH~ 124 (355)
++|+|+++|+|++|++||..+... ++++|+++ ++..+|||||...... .+||+|||||.
T Consensus 1 ~~~~p~~~c~c~~c~~a~~~~~~~---------------r~~~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~ 65 (238)
T TIGR03307 1 AQQVPVYGCDCVACQRARRNPDYR---------------RQPCSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHY 65 (238)
T ss_pred CCCCCcCCccchhhHhhhhCcccc---------------CcceEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecC
Confidence 469999999999999998854322 44556666 5679999999553222 26999999999
Q ss_pred CccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeE-EEcCCCCeeeecCCeEEEEEEcCCC
Q 018507 125 HLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDL-VALDVGETYEMRNDIVVRPFKTHHV 203 (355)
Q Consensus 125 H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~i~~g~~v~~~~~~H~ 203 (355)
|.||++|+..++. ...++++||+++.+... ...+.. . ...++ ..+..++.+.++ +++|+++++.|.
T Consensus 66 H~DHi~gl~~l~~----~~~~~~~v~~~~~~~~~-~~~~~~----~---~~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~ 132 (238)
T TIGR03307 66 HMDHVQGLFPLRW----GVGEPIPVYGPPDEEGC-DDLFKH----P---GILDFSKPLEAFEPFDLG-GLRVTPLPLVHS 132 (238)
T ss_pred chhhhcchHHHHH----hcCCceeEEeCchHhhH-HHHhcC----c---ccccccccccCCceEEEC-CEEEEEEecCCC
Confidence 9999999977743 12367889999987532 222110 0 01122 246778899996 999999999999
Q ss_pred CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccC--CCCEEEEecccC
Q 018507 204 IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADAL--RAKILITEATFL 281 (355)
Q Consensus 204 ~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~--~~d~Li~e~t~~ 281 (355)
.+++||+|+.++ ++++|+||+... .....+.+. ++|+||+||++.
T Consensus 133 ~~~~g~~i~~~~-------------------------------~~i~y~gDt~~~--~~~~~~~~~~~~~D~li~e~~~~ 179 (238)
T TIGR03307 133 KLTFGYLLETDG-------------------------------QRVAYLTDTAGL--PPDTEAFLKNHPLDVLILDCSHP 179 (238)
T ss_pred CcceEEEEecCC-------------------------------cEEEEEecCCCC--CHHHHHHHhcCCCCEEEEeCCcC
Confidence 999999998542 379999999751 111122332 799999999986
Q ss_pred CCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccc
Q 018507 282 DDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351 (355)
Q Consensus 282 ~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~ 351 (355)
.... ...+|++++++++++++++++++++||+++..+. +.+ +... ...++.+|+|||++
T Consensus 180 ~~~~-----~~~~H~~~~~~~~~~~~~~~~~lil~H~~~~~~~--~~~---~~~~-~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 180 PQSD-----APRNHNDLTRALAINEQLRPKQVILTHISHQLDA--WLM---ENPD-LPSGVAVGYDGQTL 238 (238)
T ss_pred cccc-----CCCCcCCHHHHHHHHHHcCCCEEEEEecccccch--HHH---hhhh-cCCceEEecccccC
Confidence 5431 3468999999999999999999999999987642 221 1111 35679999999985
No 9
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=268.15 Aligned_cols=248 Identities=29% Similarity=0.367 Sum_probs=189.4
Q ss_pred CceEEEEe--CCcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcCC-CCCCEEecChhhHHH
Q 018507 90 GHETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYN-LKPPTIFVPPSIKED 158 (355)
Q Consensus 90 ~~~s~~~i--~~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~~-~~~~~Iy~~~~~~~~ 158 (355)
+|.+++++ ++..+|||||+++++++ +|++|||||.|.||+.||+.++..+++.+ ..++.||+|+...++
T Consensus 18 r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~ 97 (292)
T COG1234 18 RNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEF 97 (292)
T ss_pred cccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhh
Confidence 44555665 57889999999998875 68999999999999999999988887765 457899999999988
Q ss_pred HHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchh--hhh--hhcccc-hHHHHHH
Q 018507 159 VEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKK--LKK--QYIHLK-GKQIEKL 233 (355)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~--l~~--~~~~~~-~~~~~~L 233 (355)
+...+..... .....+..+++.. +.+.+....+.|..+++||.+.++.+. ++. .. +++ ++++..|
T Consensus 98 ~~~~~~~~~~--~~~~~i~~~e~~~-------~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~-~~~~g~~~~~l 167 (292)
T COG1234 98 VETSLRLSYS--KLTYEIIGHEIEE-------DAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLK-GLPPGPLITAL 167 (292)
T ss_pred hhhhhhhccc--ccceEEEEEEecc-------CceEEEEEecCCCccccceeeecCCCcCcCCHHHhc-CCCCchHHHHH
Confidence 8776532211 1112233444432 378899999999999999999988542 321 23 886 8999999
Q ss_pred HhcCc----eec------ceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHH
Q 018507 234 KKSGV----EIT------DIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303 (355)
Q Consensus 234 k~~G~----~i~------~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~ 303 (355)
|.... .++ ....|++|+|+|||++++ +....++++|+|||||||.++. .+.+...+|+|.+||.+
T Consensus 168 ~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~---~~~~~a~~aDlLiHEat~~~~~--~~~a~~~~HsT~~eAa~ 242 (292)
T COG1234 168 KAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCD---ELIDLAKGADLLIHEATFEDDL--EDLANEGGHSTAEEAAE 242 (292)
T ss_pred hCCCceeeeecCHHHhccccCCCcEEEEECCCCCCH---HHHHHhcCCCEEEEeccCCchh--hhHHhhcCCCCHHHHHH
Confidence 97432 222 233567999999999943 3345778999999999998775 23456666999999999
Q ss_pred HHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccccc
Q 018507 304 NAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353 (355)
Q Consensus 304 ~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~~ 353 (355)
+|++.++|+++|||+|++|. .+..+.+++.++.+++++.+|.||+...+
T Consensus 243 iA~~A~vk~LiLtH~s~ry~-~~~~~~~~ea~~~f~~~~~~a~D~~~~~v 291 (292)
T COG1234 243 IAKEAGVKKLILTHFSPRYP-KDDEELLKEARAIFPGETIVARDGLVFEV 291 (292)
T ss_pred HHHHcCCCeEEEEeeccccc-chHHHHHHHHHHhCCCceEEeccceEEec
Confidence 99999999999999999997 34455556666666667999999998865
No 10
>PRK02126 ribonuclease Z; Provisional
Probab=100.00 E-value=7e-33 Score=263.86 Aligned_cols=232 Identities=22% Similarity=0.267 Sum_probs=168.8
Q ss_pred CcEEEEecCCCCccc-----cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHh-cC-C
Q 018507 99 ELKCAFDIGRCPTRA-----IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS-LG-N 171 (355)
Q Consensus 99 ~~~iLID~G~~~~~~-----~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~-~~-~ 171 (355)
+..+|||||+ .... .+|++||+||.|+||++|++.|+... +.+..+++||+|+.+.+.++..+..+.+ .. .
T Consensus 27 ~~~iLiD~G~-~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~-~~r~~~l~iygp~~~~~~l~~~~~~y~~~~~~~ 104 (334)
T PRK02126 27 RRALLFDLGD-LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHC-LGRPRRLRLFGPPGFADQVEHKLAGYTWNLVEN 104 (334)
T ss_pred CeEEEEcCCC-HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHh-ccCCCCeEEEECHHHHHHHHHHhccccccCccc
Confidence 5789999998 3321 27999999999999999999998643 2345688999999999999887752211 00 0
Q ss_pred CcCceeE--EEc--------------------------CCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcch-hhh---
Q 018507 172 VELNLDL--VAL--------------------------DVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK-KLK--- 219 (355)
Q Consensus 172 ~~~~~~~--~~l--------------------------~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~-~l~--- 219 (355)
....+.+ ..+ .++..+.. ++++|+++++.|.++|+||+|+++++ +++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~a~~~~H~vp~~gy~~~e~~~~~~~~ek 183 (334)
T PRK02126 105 YPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE-PWFRVRAAFLDHGIPCLAFALEEKAHINIDKNR 183 (334)
T ss_pred CCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC-CCEEEEEEEccCCCceeEEEEEecCCcCcCHHH
Confidence 0111222 221 13334565 49999999999999999999998764 453
Q ss_pred hhhcccc-hHHHHHHHhc-------Cceecc------------------------eeeCCeEEEEcCCCCCcc-CCcccc
Q 018507 220 KQYIHLK-GKQIEKLKKS-------GVEITD------------------------IILSPEVAFTGDTTSEFM-LNPRNA 266 (355)
Q Consensus 220 ~~~~~~~-~~~~~~Lk~~-------G~~i~~------------------------~~~~~~i~y~gDt~~~~~-~~~~~~ 266 (355)
....|+| |+|+++||+- |..|+- ...+.+++|+|||.+.+. +.....
T Consensus 184 ~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~~~l~~ 263 (334)
T PRK02126 184 LAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDIGYTEENLARIVE 263 (334)
T ss_pred HHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCCCCCcccHHHHHH
Confidence 3589995 9999999971 221211 124679999999997431 112345
Q ss_pred ccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcc
Q 018507 267 DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQS 336 (355)
Q Consensus 267 ~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~ 336 (355)
.++++|+||+||+|.++. ...+..++|++++++.+++++.++++++|||+++++..+. ++.++++++
T Consensus 264 ~a~~aDlLI~Eat~~~~~--~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~~-~~l~~e~~~ 330 (334)
T PRK02126 264 LAAGVDLLFIEAVFLDED--AEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGRG-AELYREARA 330 (334)
T ss_pred HHcCCCEEEEEcccChHH--hhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCcH-HHHHHHHHH
Confidence 678999999999998664 2345668999999999999999999999999999986544 455555544
No 11
>PRK00055 ribonuclease Z; Reviewed
Probab=99.97 E-value=7.6e-30 Score=236.82 Aligned_cols=223 Identities=29% Similarity=0.339 Sum_probs=151.2
Q ss_pred ceEEEEe--CCcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcC-CCCCCEEecChhhHHHH
Q 018507 91 HETCVII--PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLY-NLKPPTIFVPPSIKEDV 159 (355)
Q Consensus 91 ~~s~~~i--~~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~-~~~~~~Iy~~~~~~~~l 159 (355)
+++|+++ ++..+|||||+++.+++ ++++|||||.|+||++||+.++..+... +.++++||+|+.+.+.+
T Consensus 19 ~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~ 98 (270)
T PRK00055 19 NVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFV 98 (270)
T ss_pred CCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHH
Confidence 3567777 56789999999986543 5999999999999999999988655443 35688999999998888
Q ss_pred HHHHHHHHhcCC------CcCceeE-----EEcCCCCee-eecCCeEEEEEEcCCCC--CCeEEEEEEcchhhhhhhccc
Q 018507 160 EKLFEIHRSLGN------VELNLDL-----VALDVGETY-EMRNDIVVRPFKTHHVI--PSQGYVIYLLRKKLKKQYIHL 225 (355)
Q Consensus 160 ~~~~~~~~~~~~------~~~~~~~-----~~l~~g~~~-~i~~g~~v~~~~~~H~~--~~~g~~i~~~~~~l~~~~~~~ 225 (355)
+..+.....++. ....+.. ..+..+..+ .+..+.++. ..+|.. +++||+++.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~i~~~~~~~~~~~g---------- 166 (270)
T PRK00055 99 ETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVT--LEDGRIINPADVLGPPRKG---------- 166 (270)
T ss_pred HHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEE--eCCCcEEeHHHeeccCCCC----------
Confidence 776543321100 0000000 001111111 011122222 124442 68899886542
Q ss_pred chHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHH
Q 018507 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENA 305 (355)
Q Consensus 226 ~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~ 305 (355)
++++|+|||.+.+ ...+.++++|+||+||+|.+.. .+.+...+|++++++++++
T Consensus 167 ---------------------~~~~y~~Dt~~~~---~~~~~~~~~d~li~E~~~~~~~--~~~~~~~~H~~~~~a~~~~ 220 (270)
T PRK00055 167 ---------------------RKVAYCGDTRPCE---ALVELAKGADLLVHEATFGDED--EELAKEYGHSTARQAAEIA 220 (270)
T ss_pred ---------------------cEEEEeCCCCCcH---HHHHHhCCCCEEEEeccCCcch--hhHHhhcCCCCHHHHHHHH
Confidence 3799999999732 2234667999999999998664 2344568999999999999
Q ss_pred HHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccccc
Q 018507 306 KWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353 (355)
Q Consensus 306 ~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~~ 353 (355)
+++++++++++|+++++.. ..++..+++.+.+ .+|.+|+|||++..
T Consensus 221 ~~~~~~~~vl~H~~~~~~~-~~~~~~~~~~~~~-~~v~~a~Dg~~i~l 266 (270)
T PRK00055 221 KEAGVKRLILTHFSPRYTG-DPEELLKEAREIF-PNTELAEDLMRVEV 266 (270)
T ss_pred HHcCCCEEEEEeeccccCC-CHHHHHHHHHHHc-CCcEEccCCcEEEe
Confidence 9999999999999998863 2233333333334 58999999999865
No 12
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.92 E-value=5.2e-26 Score=226.02 Aligned_cols=233 Identities=22% Similarity=0.231 Sum_probs=169.9
Q ss_pred cCeEEEEEeec-------CceEEEEeC---CcEEEEecCCCCcccc--------------ccCEEEeccCCccccCChHH
Q 018507 79 EGYTIEGVSIG-------GHETCVIIP---ELKCAFDIGRCPTRAI--------------QQNFVFITHGHLDHIGGLPM 134 (355)
Q Consensus 79 ~~~~i~~~~~g-------~~~s~~~i~---~~~iLID~G~~~~~~~--------------~id~I~lTH~H~DHi~GL~~ 134 (355)
+.+.|..+++| ||-+++++. +..||+|||+++..|+ ++.+|||||.|+||..|+..
T Consensus 441 ~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~ 520 (746)
T KOG2121|consen 441 KDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLIS 520 (746)
T ss_pred CCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHH
Confidence 45778888888 677777773 3469999999997664 58999999999999999999
Q ss_pred HHHHhCcC----CCCCCEEecChhhHHHHHHHHHHH-------HhcCCCcCceeEEEcC--------CCCeeeecCCeEE
Q 018507 135 YVASRGLY----NLKPPTIFVPPSIKEDVEKLFEIH-------RSLGNVELNLDLVALD--------VGETYEMRNDIVV 195 (355)
Q Consensus 135 l~~~~~~~----~~~~~~Iy~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~l~--------~g~~~~i~~g~~v 195 (355)
++..|.-. +..++-|.+|....++++.+...- ..++. ....+..-. ....++-.+...|
T Consensus 521 vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~--~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i 598 (746)
T KOG2121|consen 521 VLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGA--PGALFAQKSPDSVPERLLSYLLRELGLESI 598 (746)
T ss_pred HHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcC--chhhhhccCccccchhhhhHHHHhcCceeE
Confidence 98766422 357898999999999998764110 01110 000000000 0112222237889
Q ss_pred EEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEE
Q 018507 196 RPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILI 275 (355)
Q Consensus 196 ~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li 275 (355)
..+++.|++.++|..+.... |++++|+|||++++.. .+..+++|+||
T Consensus 599 ~tc~viHCp~syg~~i~~~~------------------------------~~Ki~YSGDTrP~~~~---v~~g~datlLI 645 (746)
T KOG2121|consen 599 QTCPVIHCPQSYGCSITHGS------------------------------GWKIVYSGDTRPCEDL---VKAGKDATLLI 645 (746)
T ss_pred EecCcEecChhhceeEeccc------------------------------ceEEEEcCCCCCchhH---hhhccCCceEE
Confidence 99999999999999997531 3589999999995432 34667999999
Q ss_pred EecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeecccccccccC
Q 018507 276 TEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKSVYT 354 (355)
Q Consensus 276 ~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~~~~ 354 (355)
||+|+-++. .+.|.+.+|+|+.||+.+++.+++++++|||||.||+.-.+. ....-.++.+|.|+|.+-+.
T Consensus 646 HEAT~ED~l--~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~------~d~~~~~~~~afd~m~v~~~ 716 (746)
T KOG2121|consen 646 HEATLEDDL--EEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLP------SDGEMDPVCVAFDKMAVSVA 716 (746)
T ss_pred eehhhchhH--HHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCC------CccccchHHHhhhcceeecc
Confidence 999998887 588999999999999999999999999999999999752221 01111246678888877553
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.91 E-value=1.5e-23 Score=184.79 Aligned_cols=174 Identities=33% Similarity=0.519 Sum_probs=134.6
Q ss_pred EEEEecCCCCc--c---c--------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHH-HHHH
Q 018507 101 KCAFDIGRCPT--R---A--------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL-FEIH 166 (355)
Q Consensus 101 ~iLID~G~~~~--~---~--------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~-~~~~ 166 (355)
++|||||++.+ + + .++|+|||||.|.||+.|++.+......... +||+++.+.+.++.. ....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~---~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK---PIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT---EEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc---eEEecHHHHHHHHhhhcccc
Confidence 69999999754 1 1 1689999999999999999988765433222 799999999998853 2111
Q ss_pred HhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeE----EEEEEcchhhhhhhcccchHHHHHHHhcCceecc
Q 018507 167 RSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQG----YVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITD 242 (355)
Q Consensus 167 ~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g----~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~ 242 (355)
... ......+++.+.+++.++++ +++|+++++.|..+..+ |+|+.++
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~~~~~g~~i~~~~--------------------------- 129 (194)
T PF12706_consen 79 DLY-PEEDNFDIIEISPGDEFEIG-DFRITPFPANHGPPSYGGNKGFVIEPDG--------------------------- 129 (194)
T ss_dssp TTC-CTTSGEEEEEECTTEEEEET-TEEEEEEEEESSSCCEEECCEEEEEETT---------------------------
T ss_pred ccc-ccccceeEEEeccCceEEec-eEEEEEEeccccccccccCceEEEecCC---------------------------
Confidence 111 11234577888889999996 99999999999998877 9998543
Q ss_pred eeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHH-HHhhcCCCcHHHHHHHHHHcCCCeEEEEec
Q 018507 243 IILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIE-HAQQHGHTHLSEIIENAKWIRNKAVLLTHF 318 (355)
Q Consensus 243 ~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~-~a~~~~H~~~~~a~~~~~~~~~k~~vltH~ 318 (355)
++++|+||+.. . .+.++++|++|+||++..+.. . .+....|+++++++++++++++++++++|+
T Consensus 130 ----~~i~~~gD~~~-~-----~~~~~~~D~li~~~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 130 ----KKIFYSGDTNY-D-----FEELKNIDLLILECGYIDEEE--EPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp ----EEEEEETSSSS-C-----HHHHTTBSEEEEEBCBSSGGH--HCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred ----cceEEeeccch-h-----hhhhccCCEEEEeCCCcchhh--cccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 37999999998 1 234588999999999987651 2 345689999999999999999999999997
No 14
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.89 E-value=6.9e-24 Score=197.29 Aligned_cols=230 Identities=19% Similarity=0.140 Sum_probs=148.0
Q ss_pred CcccccccchHHHHHHhHHHHHHHHHhhhhccccccCcCeEEEEEeecCceEEEEeCCcEEEEecCCCCcccc------c
Q 018507 42 LNALKSAGFLSSISRAIDEEEEYRKARAAVVRKGIDLEGYTIEGVSIGGHETCVIIPELKCAFDIGRCPTRAI------Q 115 (355)
Q Consensus 42 ~~~~lGtG~~~gip~~~c~c~~C~~ar~~~~~~s~~~~~~~i~~~~~g~~~s~~~i~~~~iLID~G~~~~~~~------~ 115 (355)
..++||||+++|+|.++|+|.+|. ..+.+. ...+..+.++||+|++.+.+. .
T Consensus 5 ~f~~lgsG~~gg~p~~~~~~~~c~---~~~~~v-------------------~~~~~~~~~lid~g~~~~~~~~~~~~~~ 62 (269)
T COG1235 5 RFTVLGSGSSGGVPVIGCDCRACG---GNRLRV-------------------DCGVGVKTLLIDAGPDLRDQGLRLGVSD 62 (269)
T ss_pred EEEEEEEcCCCCceecCCCccccC---CceEEE-------------------EEEecceeEEEecChhHHhhhhcccccc
Confidence 456899999999999999999999 222222 122233489999999998663 5
Q ss_pred cCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHH-----HHHHHHHhcCCCcCceeEEEcCCCCeeeec
Q 018507 116 QNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVE-----KLFEIHRSLGNVELNLDLVALDVGETYEMR 190 (355)
Q Consensus 116 id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~ 190 (355)
+|+||+||.|+|||.|++.|+..... +++....+..... ..+++. .......++.+.+.
T Consensus 63 idai~~TH~H~DHi~Gl~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 126 (269)
T COG1235 63 LDAILLTHEHSDHIQGLDDLRRAYTL------PIYVNPGTLRASTSDRLLGGFPYL----------FRHPFPPFSLPAIG 126 (269)
T ss_pred cCeEEEecccHHhhcChHHHHHHhcC------Ccccccceecccchhhhhccchhh----------hcCCCCcccccccc
Confidence 99999999999999999999764322 1333333322222 112111 11122344556664
Q ss_pred CCeEEEEEEcCCCC-CCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCcc-CCcccccc
Q 018507 191 NDIVVRPFKTHHVI-PSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM-LNPRNADA 268 (355)
Q Consensus 191 ~g~~v~~~~~~H~~-~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~-~~~~~~~~ 268 (355)
++.++++++.|.. ...++.+.....+..- .. . .|..+ ......++|++|+...+. .+......
T Consensus 127 -~~~~~~~~~~hd~~~~~~~~~~~~~~~~~~----~~--~------~g~~~--~~~~~~vay~~Dt~~~~~~~d~~l~~~ 191 (269)
T COG1235 127 -GLEVTPFPVPHDAIEPVGFVIIRTGRKLHG----GT--D------IGYGL--EWRIGDVAYLTDTELFPSNHDVELLDN 191 (269)
T ss_pred -ceeeecCCCCCccccCCCcccccCcccccc----cc--c------ceeee--eeeeccEEEccccccCcchhHHHHhcC
Confidence 8888888888864 4555666543321100 00 0 00000 011247899999986221 11112233
Q ss_pred CCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHH
Q 018507 269 LRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQA 330 (355)
Q Consensus 269 ~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~ 330 (355)
...++++.++++.+.. ...+|+++++|+++++..++++++|||+|+.++++++.+.
T Consensus 192 ~~~~~~~~~~~~~~~g------h~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~~~ 247 (269)
T COG1235 192 GLYPLDIKDRILPDPG------HLSNHLSAEEALELIEKLKPKRLVLTHLSHKNDDEELPEL 247 (269)
T ss_pred CccceeeeeccccccC------CCCCchhHHHHHHHHHhCCcceEEEEecCCCCCHHHHhhh
Confidence 4578888898887653 4678999999999999999999999999999997655544
No 15
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.87 E-value=1.1e-20 Score=171.32 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=141.1
Q ss_pred eEEEEe--CCcEEEEecCCC---C----ccccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHH
Q 018507 92 ETCVII--PELKCAFDIGRC---P----TRAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL 162 (355)
Q Consensus 92 ~s~~~i--~~~~iLID~G~~---~----~~~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~ 162 (355)
++|+++ ++.++||||+.. . ....++|+||+||.|.||++++..+.. ...++||+++.+.+.++..
T Consensus 8 ~s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~------~~~~~v~~~~~~~~~~~~~ 81 (228)
T PRK00685 8 HSAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAK------RTGATVIANAELANYLSEK 81 (228)
T ss_pred ceEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHH------hCCCEEEEeHHHHHHHHhc
Confidence 456666 567999997432 1 112379999999999999999877643 2346799998876655431
Q ss_pred HHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCC------------CeEEEEEEcchhhhhhhcccchHHH
Q 018507 163 FEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIP------------SQGYVIYLLRKKLKKQYIHLKGKQI 230 (355)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~------------~~g~~i~~~~~~l~~~~~~~~~~~~ 230 (355)
+ . .++++++.++.++++ +++|+++|+.|+.. ++||+|+.++
T Consensus 82 -------~---~-~~~~~~~~~~~~~~~-~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~--------------- 134 (228)
T PRK00685 82 -------G---V-EKTHPMNIGGTVEFD-GGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEG--------------- 134 (228)
T ss_pred -------C---C-CceeeccCCCcEEEC-CEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECC---------------
Confidence 0 1 156778889999996 99999999999753 5899998653
Q ss_pred HHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCC
Q 018507 231 EKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN 310 (355)
Q Consensus 231 ~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~ 310 (355)
.+++|+||+.+.+... ......++|++++.+. ...|++.++|+++++++++
T Consensus 135 ----------------~~i~~~GDt~~~~~~~-~~~~~~~~D~~~~~~~------------~~~h~~~~ea~~~~~~~~~ 185 (228)
T PRK00685 135 ----------------KTIYHAGDTGLFSDMK-LIGELHKPDVALLPIG------------DNFTMGPEDAALAVELIKP 185 (228)
T ss_pred ----------------eEEEEecCccchhHHH-HHHHhhCCCEEEEecC------------CccccCHHHHHHHHHhhCC
Confidence 2799999998732111 1122347899998652 1359999999999999999
Q ss_pred CeEEEEecCCCCC-hhHHHHHHHHhcccccCceeeccccccccc
Q 018507 311 KAVLLTHFSSRYH-IEDIRQAVLKLQSKVSAKVVPLTEGFKSVY 353 (355)
Q Consensus 311 k~~vltH~s~~~~-~~~l~~~~~~~~~~~~~~v~~a~dGl~~~~ 353 (355)
|+++++|++.... .+..++..+++.+ .+.++.++.+|..+.+
T Consensus 186 k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 186 KIVIPMHYNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred CEEEEeccCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 9999999975321 1223333333333 5678999999988653
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.87 E-value=7.1e-21 Score=188.00 Aligned_cols=189 Identities=22% Similarity=0.292 Sum_probs=134.0
Q ss_pred cCceEEEEeCCcEEEEecCCCCcc-------------------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEE
Q 018507 89 GGHETCVIIPELKCAFDIGRCPTR-------------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTI 149 (355)
Q Consensus 89 g~~~s~~~i~~~~iLID~G~~~~~-------------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~I 149 (355)
|+|+..+..++..+|||||..... ..++++||+||+|.||++|++.++... ..++|
T Consensus 13 G~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~-----~~~~V 87 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTV-----GFPPI 87 (422)
T ss_pred CCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhC-----CCCeE
Confidence 455555555778999999976421 126899999999999999999987532 23579
Q ss_pred ecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCC-CCeEEEEEEcchhhhhhhcccchH
Q 018507 150 FVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI-PSQGYVIYLLRKKLKKQYIHLKGK 228 (355)
Q Consensus 150 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~-~~~g~~i~~~~~~l~~~~~~~~~~ 228 (355)
|+++.+.+.++..+... .+ .....++.+++++.++++++++|+++++.|.. +++||+++.++
T Consensus 88 y~~~~t~~~l~~~~~~~-~~---~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~------------- 150 (422)
T TIGR00649 88 YGTPLTIALIKSKIKEN-KL---NVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPL------------- 150 (422)
T ss_pred EeCHHHHHHHHHHHHhc-CC---CCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCC-------------
Confidence 99999998887665411 11 11235678889999999646999999999974 69999998653
Q ss_pred HHHHHHhcCceecceeeCCeEEEEcCCCCCccCC----cc----ccc-cCCCCEEEEecccCCCcccHHHHhhcCCCcHH
Q 018507 229 QIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLN----PR----NAD-ALRAKILITEATFLDDEMSIEHAQQHGHTHLS 299 (355)
Q Consensus 229 ~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~----~~----~~~-~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~ 299 (355)
.+++|+||+....... .. .+. ..++|+||+|+||..... .....|...+
T Consensus 151 ------------------~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~----~~~~e~~~~~ 208 (422)
T TIGR00649 151 ------------------GYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPG----FTPSEAKVLE 208 (422)
T ss_pred ------------------cEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCC----CCCCHHHHHH
Confidence 2799999997522111 00 111 246999999999985321 0124466677
Q ss_pred HHHHHHHHcCCCeEEEEecCCCC
Q 018507 300 EIIENAKWIRNKAVLLTHFSSRY 322 (355)
Q Consensus 300 ~a~~~~~~~~~k~~vltH~s~~~ 322 (355)
++.+++++.+ .+++++||+...
T Consensus 209 ~i~~~~~~~~-~~viv~~fa~~~ 230 (422)
T TIGR00649 209 QLNDIFKNAK-GRVIVATFASNI 230 (422)
T ss_pred HHHHHHHhCC-CEEEEEEccccH
Confidence 7778887665 579999999664
No 17
>PRK04286 hypothetical protein; Provisional
Probab=99.85 E-value=8.5e-21 Score=178.81 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=135.7
Q ss_pred cCceEEEEe--CCcEEEEecCCCCcc-------------------------ccccCEEEeccCCccccCChHHHHHHhCc
Q 018507 89 GGHETCVII--PELKCAFDIGRCPTR-------------------------AIQQNFVFITHGHLDHIGGLPMYVASRGL 141 (355)
Q Consensus 89 g~~~s~~~i--~~~~iLID~G~~~~~-------------------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~ 141 (355)
|..++|++| ++.++|||+|..... ..+||+||+||.|+||+.|+..++-...
T Consensus 12 g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~- 90 (298)
T PRK04286 12 GVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELS- 90 (298)
T ss_pred CceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccc-
Confidence 344567777 567999999955310 1169999999999999998866521000
Q ss_pred CCCCCCEEecChhhHHH-HHH------HHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEE-EcCCCCC--CeEEEE
Q 018507 142 YNLKPPTIFVPPSIKED-VEK------LFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPF-KTHHVIP--SQGYVI 211 (355)
Q Consensus 142 ~~~~~~~Iy~~~~~~~~-l~~------~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~-~~~H~~~--~~g~~i 211 (355)
.+..+++||+...+... ... .+.....+......-....+.+++.+.++ +++|+++ ++.|+.. +.||++
T Consensus 91 ~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig-~~~V~~~~~v~H~~~~~~~Gy~i 169 (298)
T PRK04286 91 DEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFG-GTTIEFSPPVPHGADGSKLGYVI 169 (298)
T ss_pred cccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEEC-CEEEEEeccCCCCCCCCccceEE
Confidence 11234556666555421 111 01000000000000022445678889996 9999966 8899754 777766
Q ss_pred ----EEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccC--CCCEEEEecc--cCCC
Q 018507 212 ----YLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADAL--RAKILITEAT--FLDD 283 (355)
Q Consensus 212 ----~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~--~~d~Li~e~t--~~~~ 283 (355)
+.+ +++++|+||+... ..+...+.+. ++|+|++|+. |...
T Consensus 170 ~~ri~~g-------------------------------g~~~~~~gDt~~~-~~~~~~~~l~~~d~dlLi~~~~p~~lk~ 217 (298)
T PRK04286 170 MVRISDG-------------------------------DESFVFASDVQGP-LNDEAVEFILEKKPDVVIIGGPPTYLLG 217 (298)
T ss_pred EEEEEeC-------------------------------CEEEEEECCCCCC-CCHHHHHHHhcCCCCEEEeCCcchhhhh
Confidence 332 2379999999831 1112223343 8999999983 3321
Q ss_pred cccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEE-ecCCCCChhHHHHHHHHhcccccCceeeccc
Q 018507 284 EMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT-HFSSRYHIEDIRQAVLKLQSKVSAKVVPLTE 347 (355)
Q Consensus 284 ~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vlt-H~s~~~~~~~l~~~~~~~~~~~~~~v~~a~d 347 (355)
. +......|++.+.+.++++. ++|+++|+ |+|+.++..++.+.+.+..+...-.+..|.|
T Consensus 218 ~---ri~~~~~h~s~~~~~~l~~~-~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~ 278 (298)
T PRK04286 218 R---RLSEEDLEKGIENLEEIVKN-TPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAE 278 (298)
T ss_pred h---hhccccHHHHHHHHHHHHhc-CCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHH
Confidence 1 11123467777777777777 99999999 9999988888877776655555556666665
No 18
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.76 E-value=1.8e-17 Score=165.78 Aligned_cols=205 Identities=23% Similarity=0.264 Sum_probs=140.6
Q ss_pred eecCceEEEEeCCcEEEEecCCCCccc-------------------cccCEEEeccCCccccCChHHHHHHhCcCCCCCC
Q 018507 87 SIGGHETCVIIPELKCAFDIGRCPTRA-------------------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPP 147 (355)
Q Consensus 87 ~~g~~~s~~~i~~~~iLID~G~~~~~~-------------------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~ 147 (355)
..|.|.+.+.++++.++||||-.+... .+|++|||||+|.||+||+++|+... ..+
T Consensus 19 EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~-----~~~ 93 (555)
T COG0595 19 EIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQV-----LFA 93 (555)
T ss_pred hhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcC-----CcC
Confidence 346777777888899999999443321 17999999999999999999998632 226
Q ss_pred EEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCC-CeEEEEEEcchhhhhhhcccc
Q 018507 148 TIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIP-SQGYVIYLLRKKLKKQYIHLK 226 (355)
Q Consensus 148 ~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~-~~g~~i~~~~~~l~~~~~~~~ 226 (355)
+||+++-+..+++..+...... ....++++++.++.++++ ++.|+++++.|++| ++||.+.++.
T Consensus 94 piy~s~lt~~Li~~k~~~~~~~---~~~~~~~ev~~~~~i~~~-~~~v~f~~vtHSIPds~g~~i~Tp~----------- 158 (555)
T COG0595 94 PIYASPLTAALIKEKLKEHGLF---KNENELHEVKPGSEIKFG-SFEVEFFPVTHSIPDSLGIVIKTPE----------- 158 (555)
T ss_pred ceecCHhhHHHHHHHHHHhccc---cccCceEEeCCCCeEEeC-cEEEEEEeecccCccceEEEEECCC-----------
Confidence 7999999999999887643211 123578899999999996 99999999999975 9999998774
Q ss_pred hHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCc-------ccc-ccC-CCCEEEEecccCCCcccHHHHhhcCCCc
Q 018507 227 GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNP-------RNA-DAL-RAKILITEATFLDDEMSIEHAQQHGHTH 297 (355)
Q Consensus 227 ~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~-------~~~-~~~-~~d~Li~e~t~~~~~~~~~~a~~~~H~~ 297 (355)
| .|+|+||.+.+..+.. ..+ ..+ |+++||+|+|-...+.. ....+--
T Consensus 159 ----------G----------~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~----t~SE~~v 214 (555)
T COG0595 159 ----------G----------NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGF----TPSESEV 214 (555)
T ss_pred ----------c----------cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCC----CCCHHHH
Confidence 3 6999999875332211 111 222 69999999998753210 0111111
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCC-CChhHHHHHHHHhcc
Q 018507 298 LSEIIENAKWIRNKAVLLTHFSSR-YHIEDIRQAVLKLQS 336 (355)
Q Consensus 298 ~~~a~~~~~~~~~k~~vltH~s~~-~~~~~l~~~~~~~~~ 336 (355)
.+.+.++.+..+- +++++-|+.. +..+.+.+++.+..+
T Consensus 215 ~~~l~~i~~~a~g-rVIv~tfaSni~Ri~~i~~~A~~~gR 253 (555)
T COG0595 215 GENLEDIIRNAKG-RVIVTTFASNIERIQTIIDAAEKLGR 253 (555)
T ss_pred HHHHHHHHHhCCC-cEEEEEchhhHHHHHHHHHHHHHcCC
Confidence 2334455555543 5666666554 344555555554443
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.75 E-value=1.2e-16 Score=163.73 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=130.0
Q ss_pred ccccchHHHHHHhHHHHHHHHH--h---hhhccccccCcC-eEEEEEee--cCceEEEEe--CCcEEEEecCCCCcc---
Q 018507 46 KSAGFLSSISRAIDEEEEYRKA--R---AAVVRKGIDLEG-YTIEGVSI--GGHETCVII--PELKCAFDIGRCPTR--- 112 (355)
Q Consensus 46 lGtG~~~gip~~~c~c~~C~~a--r---~~~~~~s~~~~~-~~i~~~~~--g~~~s~~~i--~~~~iLID~G~~~~~--- 112 (355)
+-|....+|.+..-....-++. + ++-.|..+.... +.|...+. ....||+++ ++.++|||||.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~i~~~~~~~~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~ 213 (630)
T TIGR03675 134 IESKTIKNIREYLRSESEERKEFLRKLGRRIHRDPIFKDRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGD 213 (630)
T ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccch
Confidence 3445555666555543333322 1 122333333222 44544443 234578887 567999999965421
Q ss_pred ------------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhc---CCCcC---
Q 018507 113 ------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNVEL--- 174 (355)
Q Consensus 113 ------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~---~~~~~--- 174 (355)
..+||+|||||+|.||++|++.|... .+ + .+||++..+.+.+...+..+..+ .....
T Consensus 214 ~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~-g~---~-gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~ 288 (630)
T TIGR03675 214 NAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY-GY---D-GPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYS 288 (630)
T ss_pred hhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh-CC---C-CceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 11599999999999999999998752 22 2 35999999988776554322111 00000
Q ss_pred -------ceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCC
Q 018507 175 -------NLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247 (355)
Q Consensus 175 -------~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~ 247 (355)
...+..+++++++.+.+++++++++++|..++..+.+...+. +.
T Consensus 289 ~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg-----------------------------~~ 339 (630)
T TIGR03675 289 SKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDG-----------------------------LY 339 (630)
T ss_pred HHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCC-----------------------------CE
Confidence 124677888999998668999999999999998887764321 12
Q ss_pred eEEEEcCCCCCc--cCCccccccCCCCEEEEecccCCC
Q 018507 248 EVAFTGDTTSEF--MLNPRNADALRAKILITEATFLDD 283 (355)
Q Consensus 248 ~i~y~gDt~~~~--~~~~~~~~~~~~d~Li~e~t~~~~ 283 (355)
+++|+||++... .+........++|+||+|+||.+.
T Consensus 340 ~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~ 377 (630)
T TIGR03675 340 NIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGR 377 (630)
T ss_pred EEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCC
Confidence 799999998732 222222234579999999999864
No 20
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.5e-15 Score=148.03 Aligned_cols=158 Identities=23% Similarity=0.352 Sum_probs=115.0
Q ss_pred CceEEEEe--CCcEEEEecCCCCccc-----c-----ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHH
Q 018507 90 GHETCVII--PELKCAFDIGRCPTRA-----I-----QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (355)
Q Consensus 90 ~~~s~~~i--~~~~iLID~G~~~~~~-----~-----~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~ 157 (355)
..++|+++ ++..+|+|||...... . ++|+++|||+|.||+++++.+.... .+ .+||+++.|.+
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~----~~-~~v~aT~~T~~ 86 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG----FE-GPVYATPPTAA 86 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc----cC-CceeeccCHHH
Confidence 34567776 5689999999654322 1 3799999999999999999987532 23 45999999999
Q ss_pred HHHHHHHHHHhcCCC------------cCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhhhhhhccc
Q 018507 158 DVEKLFEIHRSLGNV------------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHL 225 (355)
Q Consensus 158 ~l~~~~~~~~~~~~~------------~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~ 225 (355)
.++-++.....+... ...-+++.++.+++++++ +++|++++++|.+++.+|.++..+
T Consensus 87 l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~~~le~~~---------- 155 (427)
T COG1236 87 LLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAAILLEVDG---------- 155 (427)
T ss_pred HHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeEEEEEeCC----------
Confidence 988877655433310 011256679999999996 899999999999999999998653
Q ss_pred chHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCC-CCEEEEecccCCCc
Q 018507 226 KGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALR-AKILITEATFLDDE 284 (355)
Q Consensus 226 ~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~-~d~Li~e~t~~~~~ 284 (355)
.+++|+||.+.............. +|+||+|+||.+..
T Consensus 156 ---------------------~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~~~ 194 (427)
T COG1236 156 ---------------------GRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGDRL 194 (427)
T ss_pred ---------------------ceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCCcc
Confidence 269999999862111111112222 69999999998754
No 21
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.68 E-value=2.1e-15 Score=144.81 Aligned_cols=263 Identities=21% Similarity=0.270 Sum_probs=155.8
Q ss_pred ccccchHHHHHHhHHHHHHHHH--hh---hhccccccCcC-eEEEEEe--ecCceEEEEe--CCcEEEEecCCCCccc--
Q 018507 46 KSAGFLSSISRAIDEEEEYRKA--RA---AVVRKGIDLEG-YTIEGVS--IGGHETCVII--PELKCAFDIGRCPTRA-- 113 (355)
Q Consensus 46 lGtG~~~gip~~~c~c~~C~~a--r~---~~~~~s~~~~~-~~i~~~~--~g~~~s~~~i--~~~~iLID~G~~~~~~-- 113 (355)
+-|....+|.+..-+...-++- ++ +-.|..+.-+. ..|.+++ ....+||+++ ++.++|+|||-.....
T Consensus 140 i~S~ti~~ir~~l~~~~~eR~~iL~~vg~rIhr~~~~~~~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~ 219 (637)
T COG1782 140 IQSRTIKSIREILRSERKERREILRNVGRRIHREPLVKDRWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGE 219 (637)
T ss_pred CchhhHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccccCceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCcc
Confidence 5677777777776654333322 11 11122222222 2232222 2235788888 5789999999554321
Q ss_pred -------------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhc---CCCcCc--
Q 018507 114 -------------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL---GNVELN-- 175 (355)
Q Consensus 114 -------------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~---~~~~~~-- 175 (355)
..+|||+|||+|.||+|-||.|..+ +.+. +|||++.|.+.+--+...+-.+ .+...+
T Consensus 220 ~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkY----gy~G-PVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~ 294 (637)
T COG1782 220 DAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKY----GYDG-PVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYE 294 (637)
T ss_pred ccCcccccccccccccceEEEeecccccccchhhhhhc----CCCC-CeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 1599999999999999999998752 2233 4999999988775543222111 111111
Q ss_pred --------eeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCC
Q 018507 176 --------LDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSP 247 (355)
Q Consensus 176 --------~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~ 247 (355)
.....+++|+.-.|.+++++++..++|-.++..--+.-++ |. -
T Consensus 295 ~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGd---------------------Gl--------y 345 (637)
T COG1782 295 SKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGD---------------------GL--------Y 345 (637)
T ss_pred HHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecC---------------------Cc--------e
Confidence 2456778888888878999999999999887554444332 21 2
Q ss_pred eEEEEcCCCCC--ccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHH----HHHHHHHc--CCCeEEEEecC
Q 018507 248 EVAFTGDTTSE--FMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSE----IIENAKWI--RNKAVLLTHFS 319 (355)
Q Consensus 248 ~i~y~gDt~~~--~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~----a~~~~~~~--~~k~~vltH~s 319 (355)
+++|+||..++ .+++.....+.+++.||.|+||.... ..+.+-++ .++++.+. +-.++++--|.
T Consensus 346 Ni~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~--------d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fA 417 (637)
T COG1782 346 NIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRD--------DVQPPREEAEKELIKVINDTLKRGGKVLIPVFA 417 (637)
T ss_pred eEEEecccccceeeecChhhccCcchhheeeeeccCCcc--------ccCccHHHHHHHHHHHHHHHHhcCCeEEEEeee
Confidence 79999999873 34555556778899999999998322 11222223 33333321 23456666666
Q ss_pred CCCChhHHHHHHHHh-cccccCceeeccccccc
Q 018507 320 SRYHIEDIRQAVLKL-QSKVSAKVVPLTEGFKS 351 (355)
Q Consensus 320 ~~~~~~~l~~~~~~~-~~~~~~~v~~a~dGl~~ 351 (355)
-.-..|-+. -+++. ....=..+=+--|||--
T Consensus 418 VGR~QEvM~-VLee~mr~g~ipe~PVYlDGMI~ 449 (637)
T COG1782 418 VGRSQEVMI-VLEEAMRKGLIPEVPVYLDGMIW 449 (637)
T ss_pred ccccceehh-HHHHHHhcCCCCCCceeeeeeee
Confidence 655544332 22222 22222234456788754
No 22
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.66 E-value=9.9e-15 Score=140.12 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=113.8
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeE
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~ 194 (355)
+||+||+||.|.||+. +..+..... .......+++|..+.+.+... + -...++++++.|+.++++ +++
T Consensus 109 ~IDaVLiTH~H~DHlD-~~tl~~l~~-~~~~~~~~v~p~~~~~~~~~~-------G--vp~~rv~~v~~Ge~i~ig-~v~ 176 (355)
T PRK11709 109 EIDAVLATHDHSDHID-VNVAAAVLQ-NCADHVKFIGPQACVDLWIGW-------G--VPKERCIVVKPGDVVKVK-DIK 176 (355)
T ss_pred CCCEEEECCCcccccC-hHHHHHHHh-hcCCCcEEEEcHHHHHHHHhc-------C--CCcceEEEecCCCcEEEC-CEE
Confidence 6999999999999983 433322111 111346699998886654331 1 112367889999999996 999
Q ss_pred EEEEEcCCC----------------------CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEE
Q 018507 195 VRPFKTHHV----------------------IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFT 252 (355)
Q Consensus 195 v~~~~~~H~----------------------~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~ 252 (355)
|+++++.|. ..++||+|+.++ .+|+|+
T Consensus 177 It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~-------------------------------~tvy~s 225 (355)
T PRK11709 177 IHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPG-------------------------------GNIYHS 225 (355)
T ss_pred EEEEeccccccccccccccccccccccccCCcceEEEEEEeCC-------------------------------eEEEEe
Confidence 999999552 124788887553 379999
Q ss_pred cCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCC----ChhHHH
Q 018507 253 GDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRY----HIEDIR 328 (355)
Q Consensus 253 gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~----~~~~l~ 328 (355)
|||.+.+...+.. ...++|++++...- .. . ....||+.++|+++++.+++++++++|+.... +.+++.
T Consensus 226 GDT~~~~~~~~i~-~~~~iDvall~iG~--~p----~-~~~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~ 297 (355)
T PRK11709 226 GDSHYSNYFAKHG-NDHQIDVALGSYGE--NP----R-GITDKMTSIDILRMAESLNAKVVIPVHHDIWSNFQADPQEIL 297 (355)
T ss_pred CCCCccHHHHHHH-hcCCCCEEEecCCC--CC----C-CCcCCCCHHHHHHHHHHcCCCEEEEEChhhccccccCHHHHH
Confidence 9999743222111 12269999985532 11 0 13569999999999999999999999997632 345565
Q ss_pred HHHHH
Q 018507 329 QAVLK 333 (355)
Q Consensus 329 ~~~~~ 333 (355)
+..+-
T Consensus 298 ~~~~~ 302 (355)
T PRK11709 298 VLWKM 302 (355)
T ss_pred HHHHh
Confidence 55543
No 23
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.54 E-value=2.2e-13 Score=125.12 Aligned_cols=160 Identities=26% Similarity=0.397 Sum_probs=111.8
Q ss_pred ceEEEEe--CCcEEEEecCCCCc----cc--------------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEe
Q 018507 91 HETCVII--PELKCAFDIGRCPT----RA--------------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIF 150 (355)
Q Consensus 91 ~~s~~~i--~~~~iLID~G~~~~----~~--------------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy 150 (355)
.+||+++ +|++|++|||.... +. --||.|+|||+|.||++.||++-...++. . +||
T Consensus 16 GrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~---G-PIY 91 (501)
T KOG1136|consen 16 GRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYD---G-PIY 91 (501)
T ss_pred CceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCC---C-ceE
Confidence 4677776 78999999993221 11 14999999999999999999986544432 2 388
Q ss_pred cChhhHHHHHHHHHHHHhc-----CCCc---------CceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcch
Q 018507 151 VPPSIKEDVEKLFEIHRSL-----GNVE---------LNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRK 216 (355)
Q Consensus 151 ~~~~~~~~l~~~~~~~~~~-----~~~~---------~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~ 216 (355)
.+-.+....--++..++.. ++.. .--++..+.-.+++.+++++.|+++-++|..+...|.+.-++
T Consensus 92 Mt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd- 170 (501)
T KOG1136|consen 92 MTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGD- 170 (501)
T ss_pred EecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecc-
Confidence 8877766544444444321 1110 112456666778899989999999999999999998887553
Q ss_pred hhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCC--CccCCccccccCCCCEEEEecccCCCcc
Q 018507 217 KLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTS--EFMLNPRNADALRAKILITEATFLDDEM 285 (355)
Q Consensus 217 ~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~--~~~~~~~~~~~~~~d~Li~e~t~~~~~~ 285 (355)
.+++|+||..- +..+.....+-.+.|+||.|+||.....
T Consensus 171 ------------------------------~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiR 211 (501)
T KOG1136|consen 171 ------------------------------QSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIR 211 (501)
T ss_pred ------------------------------eeEEEecCccCCcccccchhhhccccCceEEeeccceeeec
Confidence 37999999874 3333333223357999999999986543
No 24
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.51 E-value=2.4e-13 Score=117.76 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=82.5
Q ss_pred CceEEEEe--CCcEEEEecCCCCccc----------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHH
Q 018507 90 GHETCVII--PELKCAFDIGRCPTRA----------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (355)
Q Consensus 90 ~~~s~~~i--~~~~iLID~G~~~~~~----------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~ 157 (355)
+..+|+++ ++..+|||||.+.... .++++||+||.|.||++|++.+... ..++||+++.+.+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~------~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA------PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC------CCCcEEEchhhhH
Confidence 44566776 5678999999654311 1799999999999999999888652 3456999999988
Q ss_pred HHHHHHHHHHhcCC-CcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEE
Q 018507 158 DVEKLFEIHRSLGN-VELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (355)
Q Consensus 158 ~l~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~ 212 (355)
.++........... ......+..+..++++.++ +.+++.+++ +|..++++|.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~ 133 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLP 133 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEEC
Confidence 87654321000000 0122356678889999996 788888888 788888888885
No 25
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.45 E-value=2e-12 Score=122.44 Aligned_cols=200 Identities=25% Similarity=0.330 Sum_probs=126.7
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCC--CCCCEEecChhhHHHHHH-HHHHHHh--cCCCc-----CceeEEEcCCC
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYN--LKPPTIFVPPSIKEDVEK-LFEIHRS--LGNVE-----LNLDLVALDVG 184 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~--~~~~~Iy~~~~~~~~l~~-~~~~~~~--~~~~~-----~~~~~~~l~~g 184 (355)
.|.+.||||+|.||+.||- +.+..+.. ..+-+|||-+.|.+.|+. .|+..-| +.... ..+++..+..+
T Consensus 79 ~I~~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~ 156 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPG 156 (335)
T ss_pred hhheEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeecccc
Confidence 5899999999999999984 33333332 256779999999999986 4554333 21111 12334444444
Q ss_pred Ceeeec------------CCeEEEEEEcCCCCC------CeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeC
Q 018507 185 ETYEMR------------NDIVVRPFKTHHVIP------SQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILS 246 (355)
Q Consensus 185 ~~~~i~------------~g~~v~~~~~~H~~~------~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~ 246 (355)
+...+. .++.++++++.|+.. +.+|+|.... .+
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~-----------------------------t~ 207 (335)
T PF02112_consen 157 ELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNI-----------------------------TG 207 (335)
T ss_pred ceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCC-----------------------------CC
Confidence 322221 145677899999853 6899997652 22
Q ss_pred CeEEEEcCCCCCccCC---------cccc--ccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcC------
Q 018507 247 PEVAFTGDTTSEFMLN---------PRNA--DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIR------ 309 (355)
Q Consensus 247 ~~i~y~gDt~~~~~~~---------~~~~--~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~------ 309 (355)
..|+|.||+.++.... .... ...++..+++||+|.+.. +....++|+++...++.++.+.
T Consensus 208 ~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~~~~~---~d~~LyGHLtP~~Li~EL~~L~~~~~~~ 284 (335)
T PF02112_consen 208 DEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSYPNSQ---PDSQLYGHLTPKHLIEELKVLASKVGQT 284 (335)
T ss_pred CEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCCCCCC---CchHhhccCCHHHHHHHHHHHHhccccc
Confidence 4799999999754211 1110 123688999999999876 3457899999988776555431
Q ss_pred -----CCeEEEEecCCCCCh-----hHHHHHHHHhccc--ccCceeecccc
Q 018507 310 -----NKAVLLTHFSSRYHI-----EDIRQAVLKLQSK--VSAKVVPLTEG 348 (355)
Q Consensus 310 -----~k~~vltH~s~~~~~-----~~l~~~~~~~~~~--~~~~v~~a~dG 348 (355)
-=++|++|+-+.... ..+...++++.+. ++-++.++..|
T Consensus 285 ~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 285 SPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLGVNFIIPEQG 335 (335)
T ss_pred cCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCceEEEEcCCC
Confidence 235999999887642 2334444555433 44455555544
No 26
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.32 E-value=6.2e-12 Score=108.14 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=90.3
Q ss_pred eEEEEe--CCcEEEEecCCCCc----cccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHH
Q 018507 92 ETCVII--PELKCAFDIGRCPT----RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEI 165 (355)
Q Consensus 92 ~s~~~i--~~~~iLID~G~~~~----~~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~ 165 (355)
++|+++ ++.++|+|+..... ...++|+|++||.|.||+.. ..+ +.+ .
T Consensus 7 ha~~~ie~~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~-~~l---------~~~---------------~-- 59 (163)
T PF13483_consen 7 HASFLIETGGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDP-ETL---------KRL---------------D-- 59 (163)
T ss_dssp TTEEEEEETTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CC-CCC---------CCH---------------H--
T ss_pred eeEEEEEECCEEEEECCCCCccCcccccCCCCEEEECCCccccCCh-hHh---------hhc---------------c--
Confidence 345555 67899999996421 12479999999999999764 111 000 0
Q ss_pred HHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCC-------CCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCc
Q 018507 166 HRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV-------IPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGV 238 (355)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~-------~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~ 238 (355)
-+.+.+..++.++++ +++|+.++..|. ....||+++.++
T Consensus 60 ----------~~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g----------------------- 105 (163)
T PF13483_consen 60 ----------RDIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVGG----------------------- 105 (163)
T ss_dssp ----------TSSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEETT-----------------------
T ss_pred ----------cccEEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeCC-----------------------
Confidence 134556667889986 999999999884 347899998753
Q ss_pred eecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEe
Q 018507 239 EITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317 (355)
Q Consensus 239 ~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH 317 (355)
.++++.||+..... .+....+.++|++++-+.- ...|..++++++++++++|.++.+|
T Consensus 106 --------~~i~~~Gd~~~~~~-~~~~~~~~~vDvl~~p~~g------------~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 106 --------VTIYHAGDTGFPPD-DEQLKQLGKVDVLFLPVGG------------PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --------EEEEE-TT--S----HHHHHHH-S-SEEEEE--T------------TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred --------CEEEEECCCccCCC-HHHHhcccCCCEEEecCCC------------CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 27999999986321 1223455689999998742 2356799999999999999999998
No 27
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.31 E-value=2e-11 Score=119.70 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=80.4
Q ss_pred cCceEEEEe-CCcEEEEecCCCCcc------------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhh
Q 018507 89 GGHETCVII-PELKCAFDIGRCPTR------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (355)
Q Consensus 89 g~~~s~~~i-~~~~iLID~G~~~~~------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~ 155 (355)
|-..+|+++ ++..+|||+|..... ..+|++|++||.|.||++|++.+++.. ...+||+++..
T Consensus 30 g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~-----p~a~V~~~~~~ 104 (394)
T PRK11921 30 GSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI-----PDTPIYCTKNG 104 (394)
T ss_pred ceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC-----CCCEEEECHHH
Confidence 444567777 456899999954211 116999999999999999999887532 34679999988
Q ss_pred HHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc--CCCCCCeEEEEEE
Q 018507 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYL 213 (355)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~--~H~~~~~g~~i~~ 213 (355)
.+.+...+. ....++.+.+|+++.++ +.+++++.+ .|.++++.+.+.+
T Consensus 105 ~~~l~~~~~---------~~~~~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~~ 154 (394)
T PRK11921 105 AKSLKGHYH---------QDWNFVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLTG 154 (394)
T ss_pred HHHHHHHhC---------CCCceEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEcC
Confidence 776653321 12345678889999996 889999966 3999988777753
No 28
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.23 E-value=7.5e-11 Score=108.47 Aligned_cols=89 Identities=18% Similarity=0.332 Sum_probs=68.1
Q ss_pred cEEEEecCCCCc-------cccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCC
Q 018507 100 LKCAFDIGRCPT-------RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172 (355)
Q Consensus 100 ~~iLID~G~~~~-------~~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~ 172 (355)
..+|||+|.... ...++++||+||.|+||++|+..+...+ +++||+++.. . +.
T Consensus 21 ~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~------~~~V~~~~~~------~------~~-- 80 (248)
T TIGR03413 21 QAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAF------PAPVYGPAEE------R------IP-- 80 (248)
T ss_pred CEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC------CCeEEecccc------c------CC--
Confidence 689999996421 1136999999999999999999986532 2679998753 0 11
Q ss_pred cCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEE
Q 018507 173 ELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (355)
Q Consensus 173 ~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~ 212 (355)
...+.+.+++.+.++ +..++.+.+ +|+.++++|.+.
T Consensus 81 ---~~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~ 117 (248)
T TIGR03413 81 ---GITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP 117 (248)
T ss_pred ---CCcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC
Confidence 113567789999996 899999998 699999999886
No 29
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.21 E-value=4.6e-11 Score=116.16 Aligned_cols=157 Identities=25% Similarity=0.359 Sum_probs=107.5
Q ss_pred ceEEEEe--CCcEEEEecCCCCc--c-----------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhh
Q 018507 91 HETCVII--PELKCAFDIGRCPT--R-----------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (355)
Q Consensus 91 ~~s~~~i--~~~~iLID~G~~~~--~-----------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~ 155 (355)
.+||+++ .|+++++|||.-.. . ...+|.+++||+|+||++.++++++.-.|.+ .+|.+..|
T Consensus 26 GRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~g----rvfmth~T 101 (668)
T KOG1137|consen 26 GRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIG----RVFMTHPT 101 (668)
T ss_pred CceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccc----eeEEecch
Confidence 4678887 68999999994322 1 1269999999999999999999986544432 36777777
Q ss_pred HHHHHHHHHHHHhcCCC-------------cCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhhhhhh
Q 018507 156 KEDVEKLFEIHRSLGNV-------------ELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQY 222 (355)
Q Consensus 156 ~~~l~~~~~~~~~~~~~-------------~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~ 222 (355)
....+.+++.+...... ....++..++..+..++ +|++|.++.++|..++..|.++-.
T Consensus 102 kAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev-~gIkf~p~~aGhVlgacMf~veia-------- 172 (668)
T KOG1137|consen 102 KAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEV-NGIKFWPYHAGHVLGACMFMVEIA-------- 172 (668)
T ss_pred HHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeecccccc-CCeEEEeeccchhhhheeeeeeec--------
Confidence 76666555443321110 00113344455566776 599999999999999999999854
Q ss_pred cccchHHHHHHHhcCceecceeeCCeEEEEcCCCCC--ccCCccccccCCCCEEEEecccCCC
Q 018507 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSE--FMLNPRNADALRAKILITEATFLDD 283 (355)
Q Consensus 223 ~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~--~~~~~~~~~~~~~d~Li~e~t~~~~ 283 (355)
|+ +++|+||...+ ..+....-.-.+.|++|.|.||...
T Consensus 173 --------------gv---------~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~ 212 (668)
T KOG1137|consen 173 --------------GV---------RLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQ 212 (668)
T ss_pred --------------eE---------EEEeccccchhhcccccchhCCCCCccEEEEEeeeeEE
Confidence 33 79999999863 2222111123478999999999754
No 30
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.19 E-value=2e-10 Score=115.12 Aligned_cols=113 Identities=17% Similarity=0.201 Sum_probs=81.2
Q ss_pred ecCceEEEEe-CCcEEEEecCCCCc-c--------c---cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChh
Q 018507 88 IGGHETCVII-PELKCAFDIGRCPT-R--------A---IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPS 154 (355)
Q Consensus 88 ~g~~~s~~~i-~~~~iLID~G~~~~-~--------~---~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~ 154 (355)
.|..-+|+++ ++..+|||+|.... . . .+|++|++||.|.||++|++.|+... ...+||+++.
T Consensus 31 ~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-----p~a~V~~s~~ 105 (479)
T PRK05452 31 RGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-----PDTPIYCTAN 105 (479)
T ss_pred CCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-----CCCEEEECHH
Confidence 3444566776 56789999995321 0 0 26999999999999999999887531 3467999998
Q ss_pred hHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc--CCCCCCeEEEEEE
Q 018507 155 IKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYVIYL 213 (355)
Q Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~--~H~~~~~g~~i~~ 213 (355)
..+.+..... ....+++.+++|+.+.++++.+++++.+ .|.++++.+.+..
T Consensus 106 ~~~~l~~~~~--------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~ 158 (479)
T PRK05452 106 AIDSINGHHH--------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTG 158 (479)
T ss_pred HHHHHHHhhc--------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcC
Confidence 8776643211 1134677889999999974567777777 4999998877753
No 31
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.16 E-value=3.9e-10 Score=101.32 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=115.8
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHH-HHHHHh--cCCC-cCceeEEEcCCCCeeeec
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL-FEIHRS--LGNV-ELNLDLVALDVGETYEMR 190 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~-~~~~~~--~~~~-~~~~~~~~l~~g~~~~i~ 190 (355)
.|...||||+|.|||.|+- +.+..+...++-+||+-..+.+.+++. |+...| +... ...+++..+++.+...+.
T Consensus 112 ~I~~y~ITH~HLDHIsGlV--inSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt 189 (356)
T COG5212 112 SINSYFITHAHLDHISGLV--INSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLT 189 (356)
T ss_pred hhhheEeccccccchhcee--ecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeee
Confidence 5999999999999999983 334444445777899999999999873 443322 1111 224677788776654432
Q ss_pred -CCeEEEEEEcCCCC----C--CeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCc
Q 018507 191 -NDIVVRPFKTHHVI----P--SQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNP 263 (355)
Q Consensus 191 -~g~~v~~~~~~H~~----~--~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~ 263 (355)
-.+++.+||++|+. + +..|+|....- ..-++|+||+.++....+
T Consensus 190 ~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS-----------------------------~~~f~~fGDvepD~vese 240 (356)
T COG5212 190 LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKS-----------------------------NEFFAYFGDVEPDDVESE 240 (356)
T ss_pred eeeecceeeeccCCcccCCcccceEEEEecCCC-----------------------------cceEEEecCCCcchhhhh
Confidence 14779999999985 3 36677764310 125899999987543221
Q ss_pred cc---------c--ccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHc----------CCCeEEEEecCCCC
Q 018507 264 RN---------A--DALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWI----------RNKAVLLTHFSSRY 322 (355)
Q Consensus 264 ~~---------~--~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~----------~~k~~vltH~s~~~ 322 (355)
.. + ...++.-+++||++.+.. +...-.+||++.-.+.....+ ..-.+++||+-...
T Consensus 241 ~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~---~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p 317 (356)
T COG5212 241 KLLDTVWRKLAEKITQQQLKGILIECSYPNDV---ADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSP 317 (356)
T ss_pred HHHHHHHHHHHHhhhHHhhCceEEEecCCCCC---ChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcc
Confidence 11 0 113578899999998765 222568999988766654433 23469999998654
No 32
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.13 E-value=1.8e-10 Score=99.57 Aligned_cols=49 Identities=35% Similarity=0.513 Sum_probs=39.1
Q ss_pred CceEEEEe--CCcEEEEecCCCCccc------------cccCEEEeccCCccccCChHHHHHH
Q 018507 90 GHETCVII--PELKCAFDIGRCPTRA------------IQQNFVFITHGHLDHIGGLPMYVAS 138 (355)
Q Consensus 90 ~~~s~~~i--~~~~iLID~G~~~~~~------------~~id~I~lTH~H~DHi~GL~~l~~~ 138 (355)
.+.+|+++ ++..+|||||.+.... .+|++||+||.|.||++|+..+...
T Consensus 4 ~~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 4 GGSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred eeEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc
Confidence 34556666 5679999999875421 2699999999999999999999864
No 33
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.13 E-value=6.1e-10 Score=102.92 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=66.5
Q ss_pred cEEEEecCCCCc-------cccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCC
Q 018507 100 LKCAFDIGRCPT-------RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNV 172 (355)
Q Consensus 100 ~~iLID~G~~~~-------~~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~ 172 (355)
..+|||+|.... ..++|++||+||.|+||++|+..|.... ..++||++... . ..
T Consensus 24 ~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~-----~~~~V~~~~~~------~------~~-- 84 (258)
T PLN02469 24 DAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV-----PGIKVYGGSLD------N------VK-- 84 (258)
T ss_pred eEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHC-----CCCEEEEechh------c------CC--
Confidence 579999983211 1136999999999999999999987532 23579987532 0 00
Q ss_pred cCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEEE
Q 018507 173 ELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (355)
Q Consensus 173 ~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~~ 213 (355)
. ..+.+.+|+.+.+++++.++++.+ +|+.+++.|.+..
T Consensus 85 --~-~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~ 123 (258)
T PLN02469 85 --G-CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTG 123 (258)
T ss_pred --C-CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEecc
Confidence 0 124577889999963468888888 9999999998853
No 34
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.12 E-value=4.7e-10 Score=103.33 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=66.7
Q ss_pred CcEEEEecCCCCcc-------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCC
Q 018507 99 ELKCAFDIGRCPTR-------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGN 171 (355)
Q Consensus 99 ~~~iLID~G~~~~~-------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~ 171 (355)
+..+|||+|..... ..++++|++||.|.||++|+..+...+ ...+||++..... .
T Consensus 22 ~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~-----~~~~V~~~~~~~~------------~- 83 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKF-----PQIVVYGPQETQD------------K- 83 (251)
T ss_pred CcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHC-----CCCEEEecccccc------------c-
Confidence 46899999965221 136899999999999999999987632 2357998764311 0
Q ss_pred CcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEE
Q 018507 172 VELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVI 211 (355)
Q Consensus 172 ~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i 211 (355)
...+.+..|+.+.++ +..++.+.+ +|+.++++|..
T Consensus 84 ----~~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~ 119 (251)
T PRK10241 84 ----GTTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFS 119 (251)
T ss_pred ----CCceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeec
Confidence 012456788999996 889999988 79999999954
No 35
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.11 E-value=4.9e-10 Score=106.41 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred eEEEEEeecCceEEEEe-C---CcEEEEecCCCCc-------cccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEE
Q 018507 81 YTIEGVSIGGHETCVII-P---ELKCAFDIGRCPT-------RAIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTI 149 (355)
Q Consensus 81 ~~i~~~~~g~~~s~~~i-~---~~~iLID~G~~~~-------~~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~I 149 (355)
+.|.....-....++++ + +..++||+|.... ..+.|++|++||.|+||++|+..|.... +.+|
T Consensus 76 ~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~------ga~V 149 (329)
T PLN02398 76 LQIELVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY------GAKV 149 (329)
T ss_pred cEEEEEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc------CCEE
Confidence 34444433333445555 3 3469999984321 1236999999999999999999997532 3579
Q ss_pred ecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEE
Q 018507 150 FVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (355)
Q Consensus 150 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~ 212 (355)
|++....+.+ . .. .+.+.+|+++.++ |.+++.+.+ +|+.++++|.+.
T Consensus 150 ~g~~~~~~~i----------~----~~-d~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~ 197 (329)
T PLN02398 150 IGSAVDKDRI----------P----GI-DIVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFP 197 (329)
T ss_pred EEehHHhhhc----------c----CC-cEEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEEC
Confidence 9987643321 1 01 2456788999996 889999988 899999999875
No 36
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.10 E-value=5.1e-09 Score=96.84 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=114.9
Q ss_pred eEEEEe--CCcEEEEecCCCCcc-------------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhH
Q 018507 92 ETCVII--PELKCAFDIGRCPTR-------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIK 156 (355)
Q Consensus 92 ~s~~~i--~~~~iLID~G~~~~~-------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~ 156 (355)
++|+++ ++.++|||+...... ...+|+|++||.|.||+..- .++... ..+...++.+....
T Consensus 14 ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~-~~~~~~---~~~~~~~~~p~~~~ 89 (258)
T COG2220 14 HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDE-TLIALR---TNKAPVVVVPLGAG 89 (258)
T ss_pred ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHH-HHHHHh---cCCCcEEEeHHHHH
Confidence 456666 567899999744321 12599999999999997643 232211 11234456655443
Q ss_pred HHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCC-------------CCeEEEEEEcchhhhhhhc
Q 018507 157 EDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHVI-------------PSQGYVIYLLRKKLKKQYI 223 (355)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~-------------~~~g~~i~~~~~~l~~~~~ 223 (355)
..+.+. ......++.+..++.++++ +++++++++.|.. ...||+|+..+
T Consensus 90 ~~~~~~---------g~~~~~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g-------- 151 (258)
T COG2220 90 DLLIRD---------GVEAERVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPG-------- 151 (258)
T ss_pred HHHHhc---------CCCcceEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeCC--------
Confidence 222111 1123357788889999995 9999999888852 15778887653
Q ss_pred ccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHH
Q 018507 224 HLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIE 303 (355)
Q Consensus 224 ~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~ 303 (355)
.++++.||+.. ...........+|++++..--.. ...++...++..
T Consensus 152 -----------------------~~iyh~GDt~~--~~~~~~~~~~~~DvallPig~~~---------~~~~~~~~~~~~ 197 (258)
T COG2220 152 -----------------------GRVYHAGDTGY--LFLIIEELDGPVDVALLPIGGYP---------NATMMPPEAAVA 197 (258)
T ss_pred -----------------------ceEEeccCccH--HHHhhhhhcCCccEEEeccCCCC---------CCccCCHHHHHH
Confidence 37999999987 22211222223899999874321 356888999999
Q ss_pred HHHHcCCCeEEEEecC
Q 018507 304 NAKWIRNKAVLLTHFS 319 (355)
Q Consensus 304 ~~~~~~~k~~vltH~s 319 (355)
+++.+++++++.+|++
T Consensus 198 ~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 198 AAEVLRPKRVIPMHYG 213 (258)
T ss_pred HHHHhcCCeEEeeccc
Confidence 9999999999999998
No 37
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=99.05 E-value=8.4e-10 Score=107.80 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=111.0
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeE
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIV 194 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~ 194 (355)
...+-|+||+|.||..||.--+ ...++||+.-+...+...+.... -.++.++-++++.+. ++.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW--------~~p~lYCS~ita~Lv~~~~~v~~--------~~i~~l~l~~~~~i~-~~~ 174 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSW--------SHPPLYCSPITARLVPLKVSVTK--------QSIQALDLNQPLEIP-GIQ 174 (481)
T ss_pred ccceeeeecccccccccccccc--------cCCcccccccchhhhhhhcccCh--------hhceeecCCCceeec-ceE
Confidence 5789999999999998885432 12339999999888876654211 145677778999995 999
Q ss_pred EEEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccc-ccc-CCCC
Q 018507 195 VRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRN-ADA-LRAK 272 (355)
Q Consensus 195 v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~-~~~-~~~d 272 (355)
|+.++++|+++++.|.|+... ++.++++||++......... ... ..+|
T Consensus 175 vt~ldAnHCPGa~mf~F~~~~------------------------------~~~~lhtGDFR~s~~m~~~p~~~~~~~i~ 224 (481)
T KOG1361|consen 175 VTLLDANHCPGAVMFLFELSF------------------------------GPCILHTGDFRASADMSKEPALTLEQTID 224 (481)
T ss_pred EEEeccccCCCceEEEeecCC------------------------------CceEEecCCcccChhhhhChHHhcCCccc
Confidence 999999999999999997432 24799999999844332211 222 5799
Q ss_pred EEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCC--CeEEEEecCCCCChhHHHH
Q 018507 273 ILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRN--KAVLLTHFSSRYHIEDIRQ 329 (355)
Q Consensus 273 ~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~--k~~vltH~s~~~~~~~l~~ 329 (355)
.+++|+||.+..+.... .+-.++.+.+++....- .++++.+-......+.+..
T Consensus 225 ~lyLDtTycnp~y~Fps----q~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~ 279 (481)
T KOG1361|consen 225 ILYLDTTYCNPKYDFPS----QEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLL 279 (481)
T ss_pred eEEEeecccCCCCCCcc----HHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHHH
Confidence 99999999987643221 12234445555444332 3466666555555555543
No 38
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.95 E-value=6.9e-09 Score=94.04 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=69.5
Q ss_pred cEEEEecCCCCc--cc---------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHh
Q 018507 100 LKCAFDIGRCPT--RA---------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRS 168 (355)
Q Consensus 100 ~~iLID~G~~~~--~~---------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~ 168 (355)
..+|||+|.... .. ..|++|++||.|.||++|+..+..... ..+++.++...............
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 110 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-----AAPVIAPAEVPLLLREEILRKAG 110 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-----CceEEccchhhhhhhcccccccc
Confidence 689999998763 11 158999999999999999998865321 24466665554444332111000
Q ss_pred --cCCC--cCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEEE
Q 018507 169 --LGNV--ELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (355)
Q Consensus 169 --~~~~--~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~~ 213 (355)
.... ...........++.+.++ +..++.+++ +|++++++|.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tpGHT~g~~~~~~~~ 159 (252)
T COG0491 111 VTAEAYAAPGASPLRALEDGDELDLG-GLELEVLHTPGHTPGHIVFLLED 159 (252)
T ss_pred cccccCCCCccccceecCCCCEEEec-CeEEEEEECCCCCCCeEEEEECC
Confidence 0000 111234455578888886 666677666 9999999999974
No 39
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.94 E-value=5.5e-09 Score=96.02 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=68.7
Q ss_pred ceEEEEe-C-----CcEEEEecCCC-Ccc--------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhh
Q 018507 91 HETCVII-P-----ELKCAFDIGRC-PTR--------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (355)
Q Consensus 91 ~~s~~~i-~-----~~~iLID~G~~-~~~--------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~ 155 (355)
.+.||++ + ++.+|||+|.. ... .++|.+||+||.|+||++|+..+.... ..+++|+....
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~-----~~a~v~~~~~~ 96 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKL-----PGVKSIISKAS 96 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHC-----CCCeEEecccc
Confidence 3455555 3 35799999853 211 137899999999999999999986522 23457765321
Q ss_pred HHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEE
Q 018507 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIY 212 (355)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~ 212 (355)
. ...+ +.+.+++.+.++ +++++++.+ +|+.++++|++.
T Consensus 97 ---------------~--~~~d-~~l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~ 135 (251)
T PLN02962 97 ---------------G--SKAD-LFVEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTG 135 (251)
T ss_pred ---------------C--CCCC-EEeCCCCEEEEC-CEEEEEEECCCCCcCcEEEEec
Confidence 0 0111 346788999996 999999988 999999999875
No 40
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.86 E-value=8.3e-08 Score=86.64 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=46.4
Q ss_pred EEEe--CCcEEEEecCCCCcccc-----------ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHH
Q 018507 94 CVII--PELKCAFDIGRCPTRAI-----------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKE 157 (355)
Q Consensus 94 ~~~i--~~~~iLID~G~~~~~~~-----------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~ 157 (355)
++++ ++.++|+|+|.+....+ .||+|+|||.|+||++||..+.. .+...++||+++....
T Consensus 24 S~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~----~~~~~i~v~ahp~af~ 96 (259)
T COG1237 24 SALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLE----ENNPGIPVYAHPDAFK 96 (259)
T ss_pred EEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHh----ccCCCceEEeChHHHh
Confidence 4444 45689999996654321 69999999999999999998865 2346688999988766
No 41
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.86 E-value=1.8e-07 Score=97.76 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=111.7
Q ss_pred CeEEEEEeecCceEEEE-eCCcEEEEecCCCCcc---------------ccccCEEEeccCCccccCChHHHHHHhCcCC
Q 018507 80 GYTIEGVSIGGHETCVI-IPELKCAFDIGRCPTR---------------AIQQNFVFITHGHLDHIGGLPMYVASRGLYN 143 (355)
Q Consensus 80 ~~~i~~~~~g~~~s~~~-i~~~~iLID~G~~~~~---------------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~ 143 (355)
...|...+.|...+.++ .+++.+|||+|+.... ..++|++++||.|.||++|+..+++...
T Consensus 439 ~~~v~~lDVGqGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~--- 515 (662)
T TIGR00361 439 SWQVDMLDVGQGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP--- 515 (662)
T ss_pred CEEEEEEecCCceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC---
Confidence 35678888885554333 3668899999975321 0259999999999999999999986432
Q ss_pred CCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEcCCC------CCCeEEEEEEcchh
Q 018507 144 LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKTHHV------IPSQGYVIYLLRKK 217 (355)
Q Consensus 144 ~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~------~~~~g~~i~~~~~~ 217 (355)
...++.+.... . .......+..|+.++++ +++++.+.-... ..++.++++.++
T Consensus 516 --v~~i~~~~~~~------------~----~~~~~~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~-- 574 (662)
T TIGR00361 516 --VKRLVIPKGFV------------E----EGVAIEECKRGDVWQWQ-GLQFHVLSPEAPDPASKNNHSCVLWVDDGG-- 574 (662)
T ss_pred --ccEEEeccchh------------h----CCCceEecCCCCEEeEC-CEEEEEECCCCccCCCCCCCceEEEEEECC--
Confidence 23577765410 0 01134457788899985 899998853221 235666665432
Q ss_pred hhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccc--cCCCCEEEEecccCCCcccHHHHhhcCC
Q 018507 218 LKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNAD--ALRAKILITEATFLDDEMSIEHAQQHGH 295 (355)
Q Consensus 218 l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~--~~~~d~Li~e~t~~~~~~~~~~a~~~~H 295 (355)
.+++++||...+.. ....+. ..++|+|..-=- . ...
T Consensus 575 -----------------------------~~~L~tGD~~~~~E-~~l~~~~~~l~~dvLk~~HH-G-----------S~~ 612 (662)
T TIGR00361 575 -----------------------------NSWLLTGDLEAEGE-QEVMRVFPNIKADVLQVGHH-G-----------SKT 612 (662)
T ss_pred -----------------------------eeEEEecCCCHHHH-HHHHhcccCcCccEEEeCCC-C-----------CCC
Confidence 37999999976210 000111 124677766210 0 111
Q ss_pred CcHHHHHHHHHHcCCCeEEEEe-cCCCC--ChhHHHHHHHHh
Q 018507 296 THLSEIIENAKWIRNKAVLLTH-FSSRY--HIEDIRQAVLKL 334 (355)
Q Consensus 296 ~~~~~a~~~~~~~~~k~~vltH-~s~~~--~~~~l~~~~~~~ 334 (355)
++ ..++.++.+|+.+++.- ..++| ++++..+.+++.
T Consensus 613 Ss---s~~fl~~v~P~~aiiS~g~~N~yghP~~~vl~rl~~~ 651 (662)
T TIGR00361 613 ST---SEELIQQVQPKVAIISAGRNNRWHHPHQKVLQRLQRH 651 (662)
T ss_pred CC---hHHHHHhcCCCEEEEECCCCCCCCCChHHHHHHHHHC
Confidence 22 34677788898877652 22344 445665555543
No 42
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.83 E-value=4.2e-08 Score=87.61 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=108.9
Q ss_pred CceEEEEeCCcEEEEecCCCCccc-------------------------cccCEEEeccCCccccCChHH-HHHHh----
Q 018507 90 GHETCVIIPELKCAFDIGRCPTRA-------------------------IQQNFVFITHGHLDHIGGLPM-YVASR---- 139 (355)
Q Consensus 90 ~~~s~~~i~~~~iLID~G~~~~~~-------------------------~~id~I~lTH~H~DHi~GL~~-l~~~~---- 139 (355)
...+.+...+-.||||+|-..... .+.|-|.|||.|+||....-+ +....
T Consensus 15 SmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~ 94 (304)
T COG2248 15 SMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETA 94 (304)
T ss_pred hhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccch
Confidence 334445556789999999554210 047999999999999976322 11110
Q ss_pred -CcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCC--CeEEEEEEcc
Q 018507 140 -GLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIP--SQGYVIYLLR 215 (355)
Q Consensus 140 -~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~--~~g~~i~~~~ 215 (355)
..+..+-+-+--|....+.-++. .....+......-.-.+..++.+|+++ +.+|++-+. .|+.. -+||++..
T Consensus 95 ~eiY~gK~lLlKhPte~IN~SQ~~-Ra~~fl~~~~~~~~~ie~ADgk~f~fG-~t~IefS~pvpHG~eGskLGyVl~v-- 170 (304)
T COG2248 95 KEIYKGKLLLLKHPTENINRSQRR-RAYRFLESLKDIAREIEYADGKTFEFG-GTVIEFSPPVPHGREGSKLGYVLMV-- 170 (304)
T ss_pred HHHhcCcEEEecCchhhhCHHHHH-HHHHHHHHhhhhcceeEecCCceEEeC-CEEEEecCCCCCCCcccccceEEEE--
Confidence 01111222122222222222221 111111111111123455689999996 999998654 99974 47888742
Q ss_pred hhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCcccccc--CCCCEEEEec--ccCCCcccHHHHh
Q 018507 216 KKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA--LRAKILITEA--TFLDDEMSIEHAQ 291 (355)
Q Consensus 216 ~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~--~~~d~Li~e~--t~~~~~~~~~~a~ 291 (355)
.|++. ..+++|++|+... ..++..+++ +..|++|+++ ||.-. .
T Consensus 171 -----------------------~V~dg--~~~i~faSDvqGp-~~~~~l~~i~e~~P~v~ii~GPpty~lg-------~ 217 (304)
T COG2248 171 -----------------------AVTDG--KSSIVFASDVQGP-INDEALEFILEKRPDVLIIGGPPTYLLG-------Y 217 (304)
T ss_pred -----------------------EEecC--CeEEEEcccccCC-CccHHHHHHHhcCCCEEEecCCchhHhh-------h
Confidence 12211 1379999999741 112223333 3799999998 42211 1
Q ss_pred hcCCC----cHHHHHHHHHHcCCCeEEEEecCCCCC-hhHHHHHHHHhcc
Q 018507 292 QHGHT----HLSEIIENAKWIRNKAVLLTHFSSRYH-IEDIRQAVLKLQS 336 (355)
Q Consensus 292 ~~~H~----~~~~a~~~~~~~~~k~~vltH~s~~~~-~~~l~~~~~~~~~ 336 (355)
..+-- ++...-+++.+.+ +++|+-|.--+.. ..+..+.+.+..+
T Consensus 218 r~~~~~~E~~irNl~~ii~~~~-~~lViDHHllRD~~y~e~l~~l~~~~~ 266 (304)
T COG2248 218 RVGPKSLEKGIRNLERIIEETN-ATLVIDHHLLRDKNYREFLEELFERAE 266 (304)
T ss_pred hcChHHHHHHHHHHHHHHHhCc-ceEEEeehhhcCCCHHHHHHHHHhhHh
Confidence 11111 2344445555554 6788887765543 3334344443333
No 43
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.83 E-value=3.6e-08 Score=89.81 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=59.2
Q ss_pred cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCe
Q 018507 114 IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDI 193 (355)
Q Consensus 114 ~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~ 193 (355)
.++.+||.||.|+||++|+..+.+... ..+.+|+.. ..... .+ -+.+..++++.++ |.
T Consensus 50 ~~l~~Il~THhH~DHsGGn~~i~~~~~----~~~~v~g~~------~~r~~---~i--------~~~~~~~e~~~~~-g~ 107 (265)
T KOG0813|consen 50 RRLTAILTTHHHYDHSGGNEDIKREIP----YDIKVIGGA------DDRIP---GI--------TRGLKDGETVTVG-GL 107 (265)
T ss_pred CceeEEEeccccccccCcHHHHHhhcc----CCcEEecCC------hhcCc---cc--------cccCCCCcEEEEC-CE
Confidence 479999999999999999999976321 346688764 11100 01 1236788999996 99
Q ss_pred EEEEEEc-CCCCCCeEEEEEE
Q 018507 194 VVRPFKT-HHVIPSQGYVIYL 213 (355)
Q Consensus 194 ~v~~~~~-~H~~~~~g~~i~~ 213 (355)
+|+++.+ +|+.+++.|.+..
T Consensus 108 ~v~~l~TPgHT~~hi~~~~~~ 128 (265)
T KOG0813|consen 108 EVRCLHTPGHTAGHICYYVTE 128 (265)
T ss_pred EEEEEeCCCccCCcEEEEeec
Confidence 9999999 9999999999974
No 44
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.77 E-value=1.4e-07 Score=94.41 Aligned_cols=152 Identities=18% Similarity=0.368 Sum_probs=103.2
Q ss_pred EEeCCcEEEEecCCCCccc-----------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHH-
Q 018507 95 VIIPELKCAFDIGRCPTRA-----------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKL- 162 (355)
Q Consensus 95 ~~i~~~~iLID~G~~~~~~-----------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~- 162 (355)
+.+++.+||||||.+-.-. ..||+|+|||...=|+|||++.+....+ + .+||++-.+.++=+-.
T Consensus 20 lqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl---~-~~VYAT~PV~~mG~m~m 95 (764)
T KOG1135|consen 20 LQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL---N-APVYATLPVIKMGQMFM 95 (764)
T ss_pred EEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCc---c-ceEEEecchhhhhhhhH
Confidence 3448899999999775422 1699999999999999999998764332 2 6699998887653321
Q ss_pred HHHHHh---cCCC--------cCce-eEEEcCCCCeeeec---CCeEEEEEEcCCCCCCeEEEEEEcchhhhhhhcccch
Q 018507 163 FEIHRS---LGNV--------ELNL-DLVALDVGETYEMR---NDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKG 227 (355)
Q Consensus 163 ~~~~~~---~~~~--------~~~~-~~~~l~~g~~~~i~---~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~ 227 (355)
++.+.. .+.. +..+ ++..+++.+++.+. .|++|++.+++|.++..-|.|...
T Consensus 96 yD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~------------- 162 (764)
T KOG1135|consen 96 YDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKV------------- 162 (764)
T ss_pred HHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEec-------------
Confidence 111111 1110 1111 45677777777764 478999999999998888988744
Q ss_pred HHHHHHHhcCceecceeeCCeEEEEcCCCC--CccCCc-cccccCCCCEEEEecccC
Q 018507 228 KQIEKLKKSGVEITDIILSPEVAFTGDTTS--EFMLNP-RNADALRAKILITEATFL 281 (355)
Q Consensus 228 ~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~--~~~~~~-~~~~~~~~d~Li~e~t~~ 281 (355)
| .+|+|+-|.+. +..+.- ....+.++.+||.++...
T Consensus 163 ---------~---------E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~ 201 (764)
T KOG1135|consen 163 ---------G---------EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHA 201 (764)
T ss_pred ---------C---------ceEEEEEecccchhcccCCccccccCCcceEEeccccc
Confidence 2 37999999875 322221 123455789999998543
No 45
>PRK11539 ComEC family competence protein; Provisional
Probab=98.72 E-value=7.5e-07 Score=94.32 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=109.2
Q ss_pred CeEEEEEeecCceEEEEe-CCcEEEEecCCCCc------c---------ccccCEEEeccCCccccCChHHHHHHhCcCC
Q 018507 80 GYTIEGVSIGGHETCVII-PELKCAFDIGRCPT------R---------AIQQNFVFITHGHLDHIGGLPMYVASRGLYN 143 (355)
Q Consensus 80 ~~~i~~~~~g~~~s~~~i-~~~~iLID~G~~~~------~---------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~ 143 (355)
...|...++|...+.++- +++.+|||+|.... + ..++|+|++||.|.||++|+..+++..
T Consensus 500 ~~~v~~lDVGqG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~---- 575 (755)
T PRK11539 500 EWRVDMLDVGHGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAW---- 575 (755)
T ss_pred cEEEEEEEccCceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhC----
Confidence 356778888865444433 67899999997421 0 126999999999999999999998643
Q ss_pred CCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCC-----CCCeEEEEEEcchh
Q 018507 144 LKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHV-----IPSQGYVIYLLRKK 217 (355)
Q Consensus 144 ~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~-----~~~~g~~i~~~~~~ 217 (355)
...+||.+.... +......|+.++++ +++++.+.. .|. ..+..++++.++
T Consensus 576 -~~~~i~~~~~~~--------------------~~~~~~~g~~~~~~-~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~-- 631 (755)
T PRK11539 576 -PMAWIRSPLNWA--------------------NHLPCVRGEQWQWQ-GLTFSVHWPLEQSNDAGNNDSCVIRVDDGK-- 631 (755)
T ss_pred -CcceeeccCccc--------------------CcccccCCCeEeEC-CEEEEEEecCcccCCCCCCccEEEEEEECC--
Confidence 234577653110 01123467778885 888888743 332 235666665432
Q ss_pred hhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCc--cCCccccccCCCCEEEEecccCCCcccHHHHhhcCC
Q 018507 218 LKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEF--MLNPRNADALRAKILITEATFLDDEMSIEHAQQHGH 295 (355)
Q Consensus 218 l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~--~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H 295 (355)
.+++++||...+. .+.+......++|+|..--- .
T Consensus 632 -----------------------------~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHH-G-------------- 667 (755)
T PRK11539 632 -----------------------------HSILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHH-G-------------- 667 (755)
T ss_pred -----------------------------EEEEEEeCCChHHHHHHHhcCccCcCCCEEEeCCC-C--------------
Confidence 3799999986521 00000001124777766211 0
Q ss_pred CcHHHHHHHHHHcCCCeEEEEe-cCCCC--ChhHHHHHHHHhc
Q 018507 296 THLSEIIENAKWIRNKAVLLTH-FSSRY--HIEDIRQAVLKLQ 335 (355)
Q Consensus 296 ~~~~~a~~~~~~~~~k~~vltH-~s~~~--~~~~l~~~~~~~~ 335 (355)
+...-..++.++.+|+.+++.- ..++| ++++..+.+++..
T Consensus 668 S~tSss~~fl~~v~P~~aiiS~g~~NryghP~~~v~~rl~~~g 710 (755)
T PRK11539 668 SNTSSSLPFIRAVNGKVALASASRYNAWRLPSVKVKQRYQQQG 710 (755)
T ss_pred CCCCChHHHHHhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHcC
Confidence 1111245678888998777643 22333 4566766666654
No 46
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.61 E-value=3.9e-06 Score=78.48 Aligned_cols=194 Identities=16% Similarity=0.218 Sum_probs=112.9
Q ss_pred eEEEEEeecCc-eEEEEeCCcEEEEecCCC--Ccccc---------ccCEEEeccCCccccCChHHHHHHhCcCCCCCCE
Q 018507 81 YTIEGVSIGGH-ETCVIIPELKCAFDIGRC--PTRAI---------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPT 148 (355)
Q Consensus 81 ~~i~~~~~g~~-~s~~~i~~~~iLID~G~~--~~~~~---------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~ 148 (355)
..+..+++|+. .+.+..++..+++|.|.. ....+ +||.+++||.|.||++|++.+++.+.. +.+-
T Consensus 44 ~~~~~lDvGqg~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v---~~~~ 120 (293)
T COG2333 44 WKVHMLDVGQGLATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV---PELW 120 (293)
T ss_pred ceEEEEEcCCCeEEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC---CcEE
Confidence 35666777754 333334667999999983 22211 599999999999999999999875433 3343
Q ss_pred EecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCC-----CCCeEEEEEEcchhhhhhh
Q 018507 149 IFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHV-----IPSQGYVIYLLRKKLKKQY 222 (355)
Q Consensus 149 Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~-----~~~~g~~i~~~~~~l~~~~ 222 (355)
++.+........ . . ......+....|+.+.++ ++.++.+.- ... ..+...+++..+
T Consensus 121 i~~~~~~~~~~~--~---~-----~~~~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~------- 182 (293)
T COG2333 121 IYAGSDSTSTFV--L---R-----DAGIPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLNNDSCVLRVTFGG------- 182 (293)
T ss_pred EeCCCCccchhh--h---h-----hcCCceeccccCceEEEC-CeEEEEEcCCccccccccCcceEEEEEeCC-------
Confidence 444433221111 1 0 123455666778889996 988888644 232 135666666542
Q ss_pred cccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCcccccc--CCCCEEEEecccCCCcccHHHHhhcCCCcHHH
Q 018507 223 IHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADA--LRAKILITEATFLDDEMSIEHAQQHGHTHLSE 300 (355)
Q Consensus 223 ~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~--~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~ 300 (355)
.+++++||...... ....+.. .++|+|..---- +..+-
T Consensus 183 ------------------------~s~LlTGD~e~~~E-~~l~~~~~~l~~dVLkV~HHG---------------S~tSs 222 (293)
T COG2333 183 ------------------------NSFLLTGDLEEKGE-KLLKKYGPDLRADVLKVGHHG---------------SKTSS 222 (293)
T ss_pred ------------------------eeEEEecCCCchhH-HHHHhhCCCccceEEEeccCC---------------ccccC
Confidence 37999999875211 1111111 136677653211 11234
Q ss_pred HHHHHHHcCCCeEEEEe-cCCCCC--hhHHHHHHHHhc
Q 018507 301 IIENAKWIRNKAVLLTH-FSSRYH--IEDIRQAVLKLQ 335 (355)
Q Consensus 301 a~~~~~~~~~k~~vltH-~s~~~~--~~~l~~~~~~~~ 335 (355)
...++++.+||..++-= ...+|. +.+..+.+++..
T Consensus 223 s~~Fl~~v~Pk~AliS~G~~N~yghPh~~Vl~rl~~~~ 260 (293)
T COG2333 223 SLAFLEAVKPKVALISSGRNNRYGHPHQEVLERLQKRG 260 (293)
T ss_pred cHHHHHhcCCcEEEEEeeccCCCCCCcHHHHHHHHhcC
Confidence 56778888887655542 224553 455666666543
No 47
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.60 E-value=3.3e-07 Score=87.90 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=78.8
Q ss_pred cCceEEEEe-CCcEEEEecCCCCccc-c-----------ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhh
Q 018507 89 GGHETCVII-PELKCAFDIGRCPTRA-I-----------QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSI 155 (355)
Q Consensus 89 g~~~s~~~i-~~~~iLID~G~~~~~~-~-----------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~ 155 (355)
|-.-++|++ +++.+|||++.....+ + +||+|+++|.-.||.++++.+++. ....+|+|++.-
T Consensus 33 GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~-----~p~a~ii~s~~~ 107 (388)
T COG0426 33 GTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL-----APNAKIICSKLA 107 (388)
T ss_pred CceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHh-----CCCCEEEeeHHH
Confidence 444445555 7789999998554322 1 599999999999999999999852 235679999988
Q ss_pred HHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeeecCCeEEEEEEc--CCCCCCeEEE
Q 018507 156 KEDVEKLFEIHRSLGNVELNLDLVALDVGETYEMRNDIVVRPFKT--HHVIPSQGYV 210 (355)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~--~H~~~~~g~~ 210 (355)
.++|+..+.. . ..+..++.|+++.+| |-+++++++ -|.++++-..
T Consensus 108 ~~~L~~~~~~--------~-~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TY 154 (388)
T COG0426 108 ARFLKGFYHD--------P-EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTY 154 (388)
T ss_pred HHHHHHhcCC--------c-cceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEe
Confidence 8887765421 1 127888999999997 877777766 7888876433
No 48
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=67.78 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=62.6
Q ss_pred CcEEEEecCCCCcc-c--------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhc
Q 018507 99 ELKCAFDIGRCPTR-A--------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSL 169 (355)
Q Consensus 99 ~~~iLID~G~~~~~-~--------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~ 169 (355)
+..++||+--++.. . +++.+-+-||.|+|||.|-..|.... +.....+.+.
T Consensus 32 ~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~-------------pg~kSVis~~------- 91 (237)
T KOG0814|consen 32 GKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLL-------------PGCKSVISSA------- 91 (237)
T ss_pred CceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhc-------------ccHHHHhhhc-------
Confidence 56899998755432 1 26788899999999999988775311 1222222211
Q ss_pred CCCcCceeEEEcCCCCeeeecCCeEEEEEEc-CCCCCCeEEEEEE
Q 018507 170 GNVELNLDLVALDVGETYEMRNDIVVRPFKT-HHVIPSQGYVIYL 213 (355)
Q Consensus 170 ~~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~-~H~~~~~g~~i~~ 213 (355)
+. .. .-.-+++|+.++++ ++.++...+ +|..+|+-|+..+
T Consensus 92 SG--ak-AD~~l~~Gd~i~~G-~~~le~ratPGHT~GC~TyV~~d 132 (237)
T KOG0814|consen 92 SG--AK-ADLHLEDGDIIEIG-GLKLEVRATPGHTNGCVTYVEHD 132 (237)
T ss_pred cc--cc-cccccCCCCEEEEc-cEEEEEecCCCCCCceEEEEecC
Confidence 11 11 11346789999997 999999888 9999999999864
No 49
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.69 E-value=0.00046 Score=62.13 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=96.9
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcCCCcCceeEEEcCCCCeeee---cC
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLGNVELNLDLVALDVGETYEM---RN 191 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~~~i---~~ 191 (355)
++|.++++|.|+||.. +..+... .+..+..=++|...+.++.. + ... .+.++..+++.++ ++
T Consensus 132 ~~d~~~vsh~h~dhld-~~~~~~~---~~~~~~~wfvp~g~k~~m~~---------~-gc~-~v~el~wwe~~~~vkn~~ 196 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLD-ADAVKKI---TDRNPQIWFVPLGMKKWMEG---------D-GSS-TVTELNWGESSEFVKNGK 196 (343)
T ss_pred CCceeccccccccccc-hHHHHhh---hccCccceeehhhhhheecC---------C-CCC-ceeEeeccchhceecCCc
Confidence 6999999999999964 4444321 22233335666655444322 1 111 1333434433222 23
Q ss_pred CeEEEEEEcCCCCCC----------eEEEEEEcchhhhhhhcccchHHHHHHHhcCceecceeeCCeEEEEcCCCCCcc-
Q 018507 192 DIVVRPFKTHHVIPS----------QGYVIYLLRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFM- 260 (355)
Q Consensus 192 g~~v~~~~~~H~~~~----------~g~~i~~~~~~l~~~~~~~~~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~- 260 (355)
-++|.+.|+.|.-.- .+|.+... +.+++|.|||++++.
T Consensus 197 ~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~-------------------------------~nrfffaGDTGyc~~~ 245 (343)
T KOG3798|consen 197 TYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGE-------------------------------NNRFFFAGDTGYCDGE 245 (343)
T ss_pred EEEEEEcchhhhcccccccCCcceeeeeEEecC-------------------------------CceEEecCCCCcccHH
Confidence 477888999995321 23444322 137999999999652
Q ss_pred CCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCC
Q 018507 261 LNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSR 321 (355)
Q Consensus 261 ~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~ 321 (355)
.....+.+..+|+..+-+.-... +--....|.+++||+++-+..++++.+-.|.+..
T Consensus 246 F~~IgerfGpfdLAaiPiGaYeP----rWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf 302 (343)
T KOG3798|consen 246 FKKIGERFGPFDLAAIPIGAYEP----RWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTF 302 (343)
T ss_pred HHHHHHhcCCcceeeccccccCc----hhhcccccCCHHHHHHHHHHHhhhcceeEeeeee
Confidence 22333455558888887643322 3345678999999999999999999999987753
No 50
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.23 E-value=0.00034 Score=49.92 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.5
Q ss_pred EEEEe--CCcEEEE-ecCCCCcccc--------ccCEEEeccCC-ccccCC
Q 018507 93 TCVII--PELKCAF-DIGRCPTRAI--------QQNFVFITHGH-LDHIGG 131 (355)
Q Consensus 93 s~~~i--~~~~iLI-D~G~~~~~~~--------~id~I~lTH~H-~DHi~G 131 (355)
.|+++ ++.++|| +||++++|.+ ++++||+|+.. +|+++|
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 45555 7789999 9999998753 79999999999 999987
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.43 E-value=0.0059 Score=52.62 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=53.5
Q ss_pred CCcEEEEecCCCCccc-------cccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHHHHHHHHHhcC
Q 018507 98 PELKCAFDIGRCPTRA-------IQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVEKLFEIHRSLG 170 (355)
Q Consensus 98 ~~~~iLID~G~~~~~~-------~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~~~~~~~~~~~ 170 (355)
++.+||||+-+-.... -.+++|+||| .||+.....+.+..+ .+||+|....+.+ +
T Consensus 31 p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~~------a~i~~p~~d~~~~----p------ 92 (199)
T PF14597_consen 31 PEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQTG------AKIYGPAADAAQF----P------ 92 (199)
T ss_dssp TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS--------EEEEEGGGCCC-----S------
T ss_pred CCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHhC------CeeeccHHHHhhC----C------
Confidence 6789999998765433 2699999997 599999988876443 4599998764221 1
Q ss_pred CCcCceeEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEE
Q 018507 171 NVELNLDLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIY 212 (355)
Q Consensus 171 ~~~~~~~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~ 212 (355)
.. --+.+.+|+++. +|++|..++-.|+++.+++.++
T Consensus 93 ---~~-~D~~l~dge~i~--~g~~vi~l~G~ktpGE~ALlle 128 (199)
T PF14597_consen 93 ---LA-CDRWLADGEEIV--PGLWVIHLPGSKTPGELALLLE 128 (199)
T ss_dssp ---S---SEEE-TT-BSS--TTEEEEEE-SSSSTTEEEEEET
T ss_pred ---CC-CccccccCCCcc--CceEEEEcCCCCCCceeEEEec
Confidence 11 113556677554 5999988888899999999986
No 52
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.49 E-value=0.012 Score=57.69 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCc--c-----------ccccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHH
Q 018507 98 PELKCAFDIGRCPT--R-----------AIQQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKED 158 (355)
Q Consensus 98 ~~~~iLID~G~~~~--~-----------~~~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~ 158 (355)
+...|+||+=.... + +..|.+|+.||+|.||++|+..+...-.. ....+.|.+|...++.
T Consensus 134 dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV-~sGkV~iiAP~GFme~ 206 (655)
T COG2015 134 DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADV-KSGKVQIIAPAGFMEE 206 (655)
T ss_pred CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHc-ccCceeEecchhHHHH
Confidence 33579999853332 1 22699999999999999999877653322 2466889999887654
No 53
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=95.22 E-value=0.19 Score=49.82 Aligned_cols=127 Identities=13% Similarity=0.225 Sum_probs=78.1
Q ss_pred ccCEEEeccCCccccCChHHHHHHhCcCCCCCCEEecChhhHHHHH----HHHHHHHhcC----------C-----CcC-
Q 018507 115 QQNFVFITHGHLDHIGGLPMYVASRGLYNLKPPTIFVPPSIKEDVE----KLFEIHRSLG----------N-----VEL- 174 (355)
Q Consensus 115 ~id~I~lTH~H~DHi~GL~~l~~~~~~~~~~~~~Iy~~~~~~~~l~----~~~~~~~~~~----------~-----~~~- 174 (355)
.||.|+|+..|. +.|||++-...+|. -+||+++.+.+.=+ ++.++..... . ...
T Consensus 96 tiDvILISNy~~--mlgLPfiTentGF~----gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsp 169 (653)
T KOG1138|consen 96 TIDVILISNYMG--MLGLPFITENTGFF----GKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSP 169 (653)
T ss_pred ceeEEEEcchhh--hcccceeecCCCce----eEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCC
Confidence 389999998874 57888776544443 35999998876532 2222221110 0 000
Q ss_pred ------ce----------------eEEEcCCCCeeeecCCeEEEEEEcCCCCCCeEEEEEEcchhhhhhhcccchHHHHH
Q 018507 175 ------NL----------------DLVALDVGETYEMRNDIVVRPFKTHHVIPSQGYVIYLLRKKLKKQYIHLKGKQIEK 232 (355)
Q Consensus 175 ------~~----------------~~~~l~~g~~~~i~~g~~v~~~~~~H~~~~~g~~i~~~~~~l~~~~~~~~~~~~~~ 232 (355)
.. ++..+...+++.+.+-+.|+++..+|..++.-|+|.....
T Consensus 170 lk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~ne---------------- 233 (653)
T KOG1138|consen 170 LKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNE---------------- 233 (653)
T ss_pred chhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCc----------------
Confidence 00 2233445566766546888999889999999999986642
Q ss_pred HHhcCceecceeeCCeEEEEcCCCCCc-cCCcc-ccccCCCCEEEEec
Q 018507 233 LKKSGVEITDIILSPEVAFTGDTTSEF-MLNPR-NADALRAKILITEA 278 (355)
Q Consensus 233 Lk~~G~~i~~~~~~~~i~y~gDt~~~~-~~~~~-~~~~~~~d~Li~e~ 278 (355)
++.|.++...-. .+... .+-++.+|+||.-+
T Consensus 234 ---------------k~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~ 266 (653)
T KOG1138|consen 234 ---------------KLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTG 266 (653)
T ss_pred ---------------ceEEEecCcccccCCccccccccccccEEEEec
Confidence 588888876411 11111 23567899999865
No 54
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=94.81 E-value=0.035 Score=57.16 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=96.9
Q ss_pred CCcEEEEecCCCCcccc--------ccCEEEeccCCccccCChHHHHHHhCcCCC-CCCEEecChhhHHHHHHHHHHHHh
Q 018507 98 PELKCAFDIGRCPTRAI--------QQNFVFITHGHLDHIGGLPMYVASRGLYNL-KPPTIFVPPSIKEDVEKLFEIHRS 168 (355)
Q Consensus 98 ~~~~iLID~G~~~~~~~--------~id~I~lTH~H~DHi~GL~~l~~~~~~~~~-~~~~Iy~~~~~~~~l~~~~~~~~~ 168 (355)
+..++++.||++.++.+ +++.||+|=.+++-+||++.++......+. .+..+++|+.....+..+......
T Consensus 72 ~~~~~~~n~Geg~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~mr~f~~r 151 (746)
T KOG2121|consen 72 DRKRFIFNCGEGTQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSAMRYFVPR 151 (746)
T ss_pred chhhhhhhhhHHHHHHHHHhhhhhhhhhheEeecccHHHhCCCccceeehhhcCCCCcccccCchhHHHHHHHHHHhhcc
Confidence 34679999999998743 699999999999999999998765544443 377899999988888776433321
Q ss_pred cCC-----CcCc---ee-EEEcCCCCeeeecCCeEEEEEEc--CCCC--------CCeEEEEEEcc--hhh---hhhhcc
Q 018507 169 LGN-----VELN---LD-LVALDVGETYEMRNDIVVRPFKT--HHVI--------PSQGYVIYLLR--KKL---KKQYIH 224 (355)
Q Consensus 169 ~~~-----~~~~---~~-~~~l~~g~~~~i~~g~~v~~~~~--~H~~--------~~~g~~i~~~~--~~l---~~~~~~ 224 (355)
.+. .... ++ ...+.+...++. +-.++..+.+ .|.. ...-|.+.... +++ |+..+|
T Consensus 152 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-~v~k~s~~~l~~~~~~~~sg~~~~~~~~y~~~~~~~~G~f~~~kA~~lG 230 (746)
T KOG2121|consen 152 SGMVLTLSIDPSAELYNLSEPVRPCVLFSD-EVLKISAINLSPPESPTDSGVKRELVVNYICQLHPIRGKFDVEKAKELG 230 (746)
T ss_pred CCceeecccCCccchhhcccCcccccccCc-cchhhheeecCCcccCCccCChhhheeEEEEecccCCCcccHHHHHHhC
Confidence 110 0000 00 000011111111 1233333333 2222 13556665444 233 445999
Q ss_pred cc-hHHHHHHHhcCceecceeeCCeEEEEcCCCCCccCCccccccCCCCEEEEec
Q 018507 225 LK-GKQIEKLKKSGVEITDIILSPEVAFTGDTTSEFMLNPRNADALRAKILITEA 278 (355)
Q Consensus 225 ~~-~~~~~~Lk~~G~~i~~~~~~~~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~ 278 (355)
+| |+.+++|++ |..|+-.. ..+++..|.... .-.++-++|+||
T Consensus 231 vp~Gp~~~~L~~-G~~vt~~~--g~i~~~~ev~gp--------~~~~~~f~il~c 274 (746)
T KOG2121|consen 231 VPKGPLIGKLKS-GESVTLDD--GTIVVPSEVVGP--------SRPGASFLILDC 274 (746)
T ss_pred CCCCcchhhhcC-CCceeccC--CcEEehhhhcCC--------CCCccEEEEecC
Confidence 97 999999998 65544211 123333444321 112456788888
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=89.75 E-value=0.3 Score=50.38 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=36.5
Q ss_pred ceEEEEeCCcEEEEecCCCCc-------cc-cccCEEEeccCCccccCChHHHHH
Q 018507 91 HETCVIIPELKCAFDIGRCPT-------RA-IQQNFVFITHGHLDHIGGLPMYVA 137 (355)
Q Consensus 91 ~~s~~~i~~~~iLID~G~~~~-------~~-~~id~I~lTH~H~DHi~GL~~l~~ 137 (355)
..+.+.++|.+||+|.|.+-. +. -+||+|+|||.-.|...|+..|+.
T Consensus 49 daALFavnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 49 DAALFAVNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceeEeecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 344455688899999986621 11 279999999999999999999875
No 56
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=83.46 E-value=1.8 Score=28.20 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.2
Q ss_pred cCCCcHHHHHHHHHHcCCCeEEEEec
Q 018507 293 HGHTHLSEIIENAKWIRNKAVLLTHF 318 (355)
Q Consensus 293 ~~H~~~~~a~~~~~~~~~k~~vltH~ 318 (355)
.+|...+++.++++.+++++++++|=
T Consensus 15 SgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 15 SGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp SSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 57999999999999999999999994
No 57
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.44 E-value=24 Score=33.06 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=29.0
Q ss_pred CCcEEEEecCCCCcc-----ccccCEEEeccCCccccCChHHH
Q 018507 98 PELKCAFDIGRCPTR-----AIQQNFVFITHGHLDHIGGLPMY 135 (355)
Q Consensus 98 ~~~~iLID~G~~~~~-----~~~id~I~lTH~H~DHi~GL~~l 135 (355)
++..+++|.|-+... +-+|+.+.+||.|.+|++++..+
T Consensus 103 ~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 103 GGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred CCceEEEecCCchhhhcCcChhhcceeEEeccCcccccccccc
Confidence 356799999977221 12799999999999999987544
No 58
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=44.68 E-value=69 Score=29.75 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=38.4
Q ss_pred EEEcCCCCCccCCccccccCCCCEEEEecccCCCcc--cHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEe
Q 018507 250 AFTGDTTSEFMLNPRNADALRAKILITEATFLDDEM--SIEHAQQHGHTHLSEIIENAKWIRNKAVLLTH 317 (355)
Q Consensus 250 ~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~--~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH 317 (355)
.+.+|..... ...+.++++|++||=+....... ..+......=...+.+++.+++.+++++|+|=
T Consensus 49 ~~~~Di~d~~---~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 49 YIQGDITDPE---SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred EEEeccccHH---HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 6778876521 12346679999999876543211 01111111222345577888888999988874
No 59
>PRK09875 putative hydrolase; Provisional
Probab=30.34 E-value=82 Score=29.65 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=27.4
Q ss_pred HHHHHHHHcCC--CeEEEEecCCCCChhHHHHHHHHhcccccCceeecccc
Q 018507 300 EIIENAKWIRN--KAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEG 348 (355)
Q Consensus 300 ~a~~~~~~~~~--k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dG 348 (355)
+.++++++.|+ +++++.|.....+.+.+.+.++ .++.+.+|.
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~-------~G~~l~fD~ 210 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMID-------LGAYVQFDT 210 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH-------cCCEEEecc
Confidence 34778888775 9999999986655544433332 355666664
No 60
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=26.37 E-value=78 Score=28.59 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=38.4
Q ss_pred cCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHHHHHHHHhcccccCceeeccccccc
Q 018507 293 HGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDIRQAVLKLQSKVSAKVVPLTEGFKS 351 (355)
Q Consensus 293 ~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l~~~~~~~~~~~~~~v~~a~dGl~~ 351 (355)
.+-.++..|.+.+.+.|.+.+.+||-|-.|..+ +..++ ...+.+-..-.++.||+.+
T Consensus 17 ~gitnf~raceva~evgkpeialthssitygae-lkhla-gvdevvvsdpvfd~~~ftv 73 (343)
T COG4074 17 TGITNFKRACEVADEVGKPEIALTHSSITYGAE-LKHLA-GVDEVVVSDPVFDADGFTV 73 (343)
T ss_pred hcchHHHHHHHHHHHhCCcceeeeechhhhHHH-HHhhc-CcceEEecCccccCCCceE
Confidence 455678899999999999999999999998753 32221 1222222344456777764
No 61
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=25.52 E-value=1.7e+02 Score=24.39 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCeEEEE---ecCCCCCh-hHHHHHHHHhccc
Q 018507 298 LSEIIENAKWIRNKAVLLT---HFSSRYHI-EDIRQAVLKLQSK 337 (355)
Q Consensus 298 ~~~a~~~~~~~~~k~~vlt---H~s~~~~~-~~l~~~~~~~~~~ 337 (355)
+.++..++++.+++++++. |+|..... +.-.+.++++...
T Consensus 60 v~eI~~~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~ 103 (138)
T PF08915_consen 60 VEEIKWVAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEER 103 (138)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHH
Confidence 6678889999999999987 77776643 3333444444433
No 62
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=24.19 E-value=35 Score=30.35 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=12.2
Q ss_pred chHHHHHHhHHHHHHHHHh
Q 018507 50 FLSSISRAIDEEEEYRKAR 68 (355)
Q Consensus 50 ~~~gip~~~c~c~~C~~ar 68 (355)
.++++|++.| .+|+.+-
T Consensus 74 ~~g~~PmvtC--RVCq~~i 90 (275)
T KOG4684|consen 74 MLGQFPMVTC--RVCQVAI 90 (275)
T ss_pred ccCCCceEee--hhhhHHh
Confidence 5567887766 7888773
No 63
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=23.80 E-value=81 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred cCCCcHHHHHHHHHHcCCCeEEEE
Q 018507 293 HGHTHLSEIIENAKWIRNKAVLLT 316 (355)
Q Consensus 293 ~~H~~~~~a~~~~~~~~~k~~vlt 316 (355)
..|+++.|+.++++.+++++++.|
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 359999999999999999999876
No 64
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=22.38 E-value=3.2e+02 Score=26.19 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=36.7
Q ss_pred eEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCc---HHHHHHHHHHcC-CCeEEEEe
Q 018507 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTH---LSEIIENAKWIR-NKAVLLTH 317 (355)
Q Consensus 248 ~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~---~~~a~~~~~~~~-~k~~vltH 317 (355)
-.+|-+|......+ ...+.|||.++|=++-.+-... +...+.-... ...+++.+++.+ +||+|+|-
T Consensus 59 l~l~~aDL~d~~sf---~~ai~gcdgVfH~Asp~~~~~~-~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 59 LKLFKADLLDEGSF---DKAIDGCDGVFHTASPVDFDLE-DPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred ceEEeccccccchH---HHHHhCCCEEEEeCccCCCCCC-CcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 35778888653222 2356789999998865432210 0000111122 334556666666 89999985
No 65
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=20.79 E-value=1.4e+02 Score=26.88 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=34.6
Q ss_pred ccCCCCEEEEe--cccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEE-ecCCCCChhHHHHHHHHh
Q 018507 267 DALRAKILITE--ATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLT-HFSSRYHIEDIRQAVLKL 334 (355)
Q Consensus 267 ~~~~~d~Li~e--~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vlt-H~s~~~~~~~l~~~~~~~ 334 (355)
.+.++|+.++. +.+.+.................+.++.+++++...+-+- -..-.+..+.+.+.++.+
T Consensus 29 ~~~~aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l 99 (239)
T smart00854 29 LLRAADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAAL 99 (239)
T ss_pred HHhcCCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHH
Confidence 56689998874 454433210000001223345678889999998655442 222233334555544443
No 66
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=20.51 E-value=4.2e+02 Score=26.09 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=41.4
Q ss_pred eEEEEcCCCCCccCCccccccCCCCEEEEecccCCCcccHHHHhhcCCCcHHHHHHHHHHcCCCeEEEEecCCCCChhHH
Q 018507 248 EVAFTGDTTSEFMLNPRNADALRAKILITEATFLDDEMSIEHAQQHGHTHLSEIIENAKWIRNKAVLLTHFSSRYHIEDI 327 (355)
Q Consensus 248 ~i~y~gDt~~~~~~~~~~~~~~~~d~Li~e~t~~~~~~~~~~a~~~~H~~~~~a~~~~~~~~~k~~vltH~s~~~~~~~l 327 (355)
.++|.+........ .....+.=|+++.|.- .|.++-+.++ ..++++.++-| ++.+.+
T Consensus 102 al~f~SGy~AN~~~--i~~l~~~~dli~~D~l--------------nHASiidG~r---ls~a~~~~f~H----nD~~~L 158 (388)
T COG0156 102 ALLFSSGFVANLGL--LSALLKKGDLIFSDEL--------------NHASIIDGIR---LSRAEVRRFKH----NDLDHL 158 (388)
T ss_pred EEEEcccchhHHHH--HHHhcCCCcEEEEech--------------hhhhHHHHHH---hCCCcEEEecC----CCHHHH
Confidence 47777776541110 1123334577777652 3555444433 34566666666 333556
Q ss_pred HHHHHHhcccccCceeecccccccc
Q 018507 328 RQAVLKLQSKVSAKVVPLTEGFKSV 352 (355)
Q Consensus 328 ~~~~~~~~~~~~~~v~~a~dGl~~~ 352 (355)
++.+++....-..++.++.||.-+|
T Consensus 159 e~~l~~~~~~~~~~~~IvtegVfSM 183 (388)
T COG0156 159 EALLEEARENGARRKLIVTEGVFSM 183 (388)
T ss_pred HHHHHhhhccCCCceEEEEeccccC
Confidence 6655553211113566677776655
Done!