BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018508
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 143/249 (57%), Gaps = 3/249 (1%)
Query: 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG 135
K RL+ E GL+L S + +AEI+ +GYD++++D EH P I D L A+A
Sbjct: 9 FKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYA 68
Query: 136 TPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVR 195
+ ++R E K+ LD+G Q ++ PM+D+ E A++ VS R+PP G RG +V R
Sbjct: 69 SQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVAR 128
Query: 196 ASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLW 255
A+ +G E Y++ + L ++ QVES+ + ++I V+G+D V +GP DLSAS+GY
Sbjct: 129 AARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPD 188
Query: 256 DPGHRKVREMMRVAEKGVLGGGKAYLAGF-AMPHDAPLEMKSRGYHMVSGAVDVGLFRSA 314
+ GH +V+ ++ + + + GKA AGF A+ D + + G + V+ VD L+ A
Sbjct: 189 NAGHPEVQRIIETSIRRIRAAGKA--AGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDA 246
Query: 315 AVEDVARFK 323
+ +A FK
Sbjct: 247 LDQRLAMFK 255
>pdb|1DXF|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli In Complex With Pyruvate
pdb|1DXF|B Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli In Complex With Pyruvate
Length = 256
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 12/253 (4%)
Query: 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG 135
K L + + G + +P E+ GLAG+D++V+D EH P IS + L AL +
Sbjct: 10 FKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLXALKGSA 69
Query: 136 TPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVR 195
+ ++R+P + P K+ LD+G + P +++ E A+ AV+ R+PP G+RG + + R
Sbjct: 70 SAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVS-HR 128
Query: 196 ASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLW 255
A+ +G Y + + + I+ Q+ES++GV + IAA +GVD + +GP DL+A++G+L
Sbjct: 129 ANXFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLG 188
Query: 256 DPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGY-----HMVSGAVDVGL 310
+ H V++ ++ GK +G AP+E +R Y V+ D+G+
Sbjct: 189 NASHPDVQKAIQHIFNRASAHGKP--SGIL----APVEADARRYLEWGATFVAVGSDLGV 242
Query: 311 FRSAAVEDVARFK 323
FRSA + FK
Sbjct: 243 FRSATQKLADTFK 255
>pdb|1DXE|A Chain A, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli
pdb|1DXE|B Chain B, 2-Dehydro-3-Deoxy-Galactarate Aldolase From Escherichia
Coli
Length = 256
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 12/253 (4%)
Query: 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG 135
K L + + G + +P E+ GLAG+D++V+D EH P IS + L AL +
Sbjct: 10 FKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSA 69
Query: 136 TPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVR 195
+ ++R+P + P K+ LD+G + P +++ E A+ AV+ R+PP G+RG + + R
Sbjct: 70 SAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVS-HR 128
Query: 196 ASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLW 255
A+ +G Y + + + I+ Q+ES++GV + IAA +GVD + +GP DL+A++G+L
Sbjct: 129 ANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLG 188
Query: 256 DPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGY-----HMVSGAVDVGL 310
+ H V++ ++ GK +G AP+E +R Y V+ D+G+
Sbjct: 189 NASHPDVQKAIQHIFNRASAHGKP--SGIL----APVEADARRYLEWGATFVAVGSDLGV 242
Query: 311 FRSAAVEDVARFK 323
FRSA + FK
Sbjct: 243 FRSATQKLADTFK 255
>pdb|4B5V|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With
4-hydroxyl-2-ketoheptane-1,7-dioate
Length = 251
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 113/205 (55%)
Query: 75 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT 134
S K L++ GL+L S AE+ AG+D++++D EH P + L L A+A
Sbjct: 4 SFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPY 63
Query: 135 GTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVV 194
+ ++R + P K+ LD+G Q ++ PM+ + + A+EAV R+PP+G+RG +
Sbjct: 64 PSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALA 123
Query: 195 RASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254
RAS + YL +++ ++ Q+E+ E +K I V+GVD V +GP DLSA MGY
Sbjct: 124 RASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGYA 183
Query: 255 WDPGHRKVREMMRVAEKGVLGGGKA 279
+P H +V+ + A + GKA
Sbjct: 184 GNPQHPEVQAAIEQAIVQIRESGKA 208
>pdb|4B5S|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate
pdb|4B5S|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate
pdb|4B5T|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Ketobutyrate
pdb|4B5T|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Ketobutyrate
pdb|4B5U|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate And Succinic
Semialdehyde
pdb|4B5U|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With Pyruvate And Succinic
Semialdehyde
pdb|4B5V|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase, Hpai, In Complex With
4-hydroxyl-2-ketoheptane-1,7-dioate
Length = 251
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 113/206 (54%)
Query: 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA 133
S K L++ GL+L S AE+ AG+D++++D EH P + L L A+A
Sbjct: 3 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAP 62
Query: 134 TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTV 193
+ ++R + P K+ LD+G Q ++ PM+ + + A+EAV R+PP+G+RG +
Sbjct: 63 YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSAL 122
Query: 194 VRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253
RAS + YL +++ ++ Q+E+ E +K I V+GVD V +GP DLSA MGY
Sbjct: 123 ARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGY 182
Query: 254 LWDPGHRKVREMMRVAEKGVLGGGKA 279
+P H +V+ + A + GKA
Sbjct: 183 AGNPQHPEVQAAIEQAIVQIRESGKA 208
>pdb|2V5J|A Chain A, Apo Class Ii Aldolase Hpch
pdb|2V5J|B Chain B, Apo Class Ii Aldolase Hpch
pdb|2V5K|A Chain A, Class Ii Aldolase Hpch - Magnesium - Oxamate Complex
pdb|2V5K|B Chain B, Class Ii Aldolase Hpch - Magnesium - Oxamate Complex
Length = 287
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 113/206 (54%)
Query: 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA 133
S K L++ GL+L S AE+ AG+D++++D EH P + L L A+A
Sbjct: 28 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAP 87
Query: 134 TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTV 193
+ ++R + P K+ LD+G Q ++ PM+ + + A+EAV R+PP+G+RG +
Sbjct: 88 YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSAL 147
Query: 194 VRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253
RAS + YL +++ ++ Q+E+ E +K I V+GVD V +GP DLSA MGY
Sbjct: 148 ARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGY 207
Query: 254 LWDPGHRKVREMMRVAEKGVLGGGKA 279
+P H +V+ + A + GKA
Sbjct: 208 AGNPQHPEVQAAIEQAIVQIRESGKA 233
>pdb|4B5W|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|C Chain C, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|D Chain D, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|E Chain E, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
pdb|4B5W|F Chain F, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase R70a Mutant, Hpai, In Complex With Pyruvate
Length = 256
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 112/206 (54%)
Query: 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA 133
S K L++ GL+L S AE+ AG+D++++D EH P + L L A+A
Sbjct: 3 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAP 62
Query: 134 TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTV 193
+ ++ + P K+ LD+G Q ++ PM+ + + A+EAV R+PP+G+RG +
Sbjct: 63 YPSQPVVAPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSAL 122
Query: 194 VRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253
RAS + YL +++ ++ Q+E+ E +K I V+GVD V +GP DLSA MGY
Sbjct: 123 ARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGY 182
Query: 254 LWDPGHRKVREMMRVAEKGVLGGGKA 279
+P H +V+ + A + GKA
Sbjct: 183 AGNPQHPEVQAAIEQAIVQIRESGKA 208
>pdb|4B5X|A Chain A, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase (Hpai), Mutant D42a
pdb|4B5X|B Chain B, Crystal Structures Of Divalent Metal Dependent Pyruvate
Aldolase (Hpai), Mutant D42a
Length = 262
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 112/206 (54%)
Query: 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA 133
S K L++ GL+L S AE+ AG+D++++ EH P + L L A+A
Sbjct: 3 NSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIAGEHAPNNVQTVLTQLQAIAP 62
Query: 134 TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTV 193
+ ++R + P K+ LD+G Q ++ PM+ + + A+EAV R+PP+G+RG +
Sbjct: 63 YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSAL 122
Query: 194 VRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253
RAS + YL +++ ++ Q+E+ E +K I V+GVD V +GP DLSA MGY
Sbjct: 123 ARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADLSADMGY 182
Query: 254 LWDPGHRKVREMMRVAEKGVLGGGKA 279
+P H +V+ + A + GKA
Sbjct: 183 AGNPQHPEVQAAIEQAIVQIRESGKA 208
>pdb|3QZ6|A Chain A, The Crystal Structure Of HpchHPAI ALDOLASE FROM
DESULFITOBACTERIUM Hafniense Dcb-2
Length = 261
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 6/207 (2%)
Query: 76 LKYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT 134
LK +L + +++ G L L ++P + I AG D+ +VD EH + +
Sbjct: 6 LKKKLSAGKSVVGTXLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNA 65
Query: 135 GTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVV 194
G ++R+P+ ++ LD+G +G P + S E +E V ++PP G RG ++V
Sbjct: 66 GVSVLVRIPQVDRAHVQRLLDIGAEGFXIPGVQSAETXRETVRLAKYPPLGERGVGGSIV 125
Query: 195 RASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254
++ +E+ I Q+E + V+ + I AV GVD V GP DLS +G +
Sbjct: 126 TDFKPVNWAEWVQERNDEIFIXAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLSNDLGII 185
Query: 255 WDPGHRKVRE----MMRVAEK-GVLGG 276
H KV E + R A++ GV+ G
Sbjct: 186 GQTEHPKVYECYEKVYRAADRQGVVKG 212
>pdb|1IZC|A Chain A, Crystal Structure Analysis Of Macrophomate Synthase
Length = 339
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 108 DFVVVDMEHGPGG---ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFP 164
DFV +D+EHG + DA+ + + I+R+P+ ALD G G++ P
Sbjct: 65 DFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIP 124
Query: 165 MIDSPEAAKEAVSYCRFPPSGVRG-----SAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219
+++ E +E V + P G R + + AS + D ++ + I+ Q+
Sbjct: 125 HVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQI 184
Query: 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPG 258
ES +GV+ + IAA+ + + GP D Y+ D G
Sbjct: 185 ESVKGVENVDAIAAMPEIHGLMFGPGD------YMIDAG 217
>pdb|1YG2|A Chain A, Structure Of The Vibrio Cholerae Virulence Activator Apha
Length = 179
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 246 DLSASMGYLWDPGHRKV-REMMRVAEKGVL 274
+ SAS+GY W H++V RE+ ++ E+G++
Sbjct: 24 EFSASIGYFWKASHQQVYRELNKMGEQGLV 53
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 12/43 (27%)
Query: 239 CVQMGPLDLSASM----------GYLWDPGHRK--VREMMRVA 269
CV++GP D+ + GYLWDP K +RE R+A
Sbjct: 136 CVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIREAARIA 178
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 239 CVQMGPLDLSASM----------GYLWDPGHRK--VREMMRVAEK 271
CV++GP D+ A + GYLWDP K + + R+A +
Sbjct: 156 CVELGPEDVEADVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQ 200
>pdb|4EQ5|A Chain A, Dna Ligase From The Archaeon Thermococcus Sibiricus
Length = 571
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 139 ILRLPESCPTWAKKALDLGPQGVMFPMIDS 168
I + PE + KALDLG +G+M +DS
Sbjct: 390 ITKSPEEAEAFYHKALDLGHEGLMAKRLDS 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,853,070
Number of Sequences: 62578
Number of extensions: 387139
Number of successful extensions: 807
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 15
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)