Query 018508
Match_columns 355
No_of_seqs 227 out of 1533
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3836 HpcH 2,4-dihydroxyhept 100.0 2.6E-62 5.6E-67 450.8 27.5 252 71-323 3-254 (255)
2 PRK10128 2-keto-3-deoxy-L-rham 100.0 6.6E-61 1.4E-65 457.0 30.1 253 72-325 5-257 (267)
3 TIGR03239 GarL 2-dehydro-3-deo 100.0 9.6E-60 2.1E-64 445.4 29.4 249 74-324 1-249 (249)
4 PRK10558 alpha-dehydro-beta-de 100.0 1.3E-59 2.9E-64 446.1 29.9 252 71-324 5-256 (256)
5 TIGR02311 HpaI 2,4-dihydroxyhe 100.0 5E-57 1.1E-61 426.9 29.1 249 74-323 1-249 (249)
6 PF03328 HpcH_HpaI: HpcH/HpaI 100.0 1.8E-41 4E-46 314.1 19.0 204 87-310 2-217 (221)
7 TIGR01588 citE citrate lyase, 100.0 5.7E-35 1.2E-39 281.8 21.9 219 88-326 6-247 (288)
8 TIGR01417 PTS_I_fam phosphoeno 100.0 5.2E-27 1.1E-31 244.7 20.5 210 84-311 265-531 (565)
9 PRK11177 phosphoenolpyruvate-p 99.9 2E-26 4.4E-31 240.4 20.0 208 85-310 267-531 (575)
10 COG2301 CitE Citrate lyase bet 99.9 2.8E-25 6E-30 212.8 19.0 215 88-326 2-239 (283)
11 PRK06464 phosphoenolpyruvate s 99.9 1.7E-23 3.8E-28 225.6 21.4 208 84-315 478-783 (795)
12 TIGR01418 PEP_synth phosphoeno 99.9 4E-23 8.6E-28 222.7 22.3 206 85-314 477-775 (782)
13 COG1080 PtsA Phosphoenolpyruva 99.9 3E-21 6.5E-26 197.9 15.7 212 84-313 267-535 (574)
14 PRK11061 fused phosphoenolpyru 99.8 9.4E-20 2E-24 195.9 18.0 208 86-311 434-698 (748)
15 PF02896 PEP-utilizers_C: PEP- 99.8 2.8E-20 6E-25 180.0 9.6 210 84-313 17-286 (293)
16 TIGR01344 malate_syn_A malate 99.7 7.4E-17 1.6E-21 165.3 19.4 215 85-320 67-363 (511)
17 cd00480 malate_synt Malate syn 99.7 1E-16 2.3E-21 165.3 19.7 209 87-316 66-358 (511)
18 cd00727 malate_synt_A Malate s 99.7 1.2E-16 2.5E-21 164.0 19.7 212 86-319 68-361 (511)
19 PRK09255 malate synthase; Vali 99.7 2.3E-16 5E-21 162.5 21.1 214 85-319 88-382 (531)
20 PRK05826 pyruvate kinase; Prov 99.7 2.7E-16 5.8E-21 160.8 14.9 131 144-309 173-317 (465)
21 TIGR01064 pyruv_kin pyruvate k 99.7 7.7E-16 1.7E-20 158.1 14.4 127 148-310 175-316 (473)
22 PTZ00300 pyruvate kinase; Prov 99.7 9E-16 2E-20 156.3 14.2 137 138-309 141-290 (454)
23 TIGR01828 pyru_phos_dikin pyru 99.7 2.6E-15 5.7E-20 163.2 18.0 206 84-308 527-853 (856)
24 PLN02623 pyruvate kinase 99.6 3.1E-15 6.7E-20 155.5 14.5 127 149-310 283-422 (581)
25 PRK09279 pyruvate phosphate di 99.6 1.8E-14 3.8E-19 156.7 19.2 213 84-315 533-866 (879)
26 COG3605 PtsP Signal transducti 99.5 3.5E-13 7.6E-18 138.3 12.5 204 85-308 441-703 (756)
27 cd00288 Pyruvate_Kinase Pyruva 99.5 6.1E-13 1.3E-17 136.8 13.9 127 148-309 178-317 (480)
28 PRK09206 pyruvate kinase; Prov 99.4 6.3E-12 1.4E-16 128.8 14.9 135 140-309 165-316 (470)
29 PRK06354 pyruvate kinase; Prov 99.3 8.5E-12 1.8E-16 131.1 13.6 128 148-309 182-322 (590)
30 PRK06247 pyruvate kinase; Prov 99.3 2.6E-11 5.7E-16 124.3 13.4 124 148-309 177-313 (476)
31 PRK08187 pyruvate kinase; Vali 99.2 5.5E-11 1.2E-15 122.6 12.4 114 138-281 303-422 (493)
32 PLN02626 malate synthase 99.2 5.8E-10 1.2E-14 115.1 19.2 205 95-319 100-388 (551)
33 PF00224 PK: Pyruvate kinase, 99.0 6E-09 1.3E-13 103.6 12.1 127 148-309 180-319 (348)
34 PRK06739 pyruvate kinase; Vali 98.9 1.1E-08 2.5E-13 101.6 12.5 128 148-309 169-309 (352)
35 PTZ00066 pyruvate kinase; Prov 98.8 2.4E-08 5.2E-13 103.4 12.2 126 149-309 214-353 (513)
36 PLN02762 pyruvate kinase compl 98.8 4.4E-08 9.5E-13 101.5 13.0 128 149-309 208-348 (509)
37 PLN02461 Probable pyruvate kin 98.8 5.1E-08 1.1E-12 101.0 12.6 126 149-309 198-337 (511)
38 PLN02765 pyruvate kinase 98.7 7.3E-08 1.6E-12 100.1 12.3 127 149-309 211-350 (526)
39 PRK14725 pyruvate kinase; Prov 98.5 4.1E-07 8.9E-12 95.6 10.0 100 149-281 437-539 (608)
40 COG0469 PykF Pyruvate kinase [ 98.4 1.6E-06 3.5E-11 89.2 10.6 128 148-309 179-319 (477)
41 COG0574 PpsA Phosphoenolpyruva 98.4 1.4E-06 3.1E-11 94.5 10.1 127 159-312 596-730 (740)
42 PF15617 C-C_Bond_Lyase: C-C_B 98.3 0.00014 3E-09 72.1 20.1 234 88-347 9-327 (345)
43 TIGR00262 trpA tryptophan synt 97.9 0.0027 5.8E-08 60.8 20.1 189 81-309 6-231 (256)
44 PF01274 Malate_synthase: Mala 97.7 0.00021 4.5E-09 74.7 10.5 203 95-319 90-380 (526)
45 TIGR01163 rpe ribulose-phospha 97.6 0.0023 5E-08 58.1 15.4 175 95-308 13-196 (210)
46 PRK05581 ribulose-phosphate 3- 97.6 0.0036 7.8E-08 57.4 15.3 175 97-309 20-202 (220)
47 KOG2323 Pyruvate kinase [Carbo 97.5 0.00023 5E-09 73.5 7.7 124 150-308 200-336 (501)
48 cd00429 RPE Ribulose-5-phospha 97.5 0.007 1.5E-07 54.8 16.4 176 97-309 16-198 (211)
49 CHL00200 trpA tryptophan synth 97.5 0.049 1.1E-06 52.5 22.6 189 82-309 12-235 (263)
50 PTZ00170 D-ribulose-5-phosphat 97.5 0.0018 4E-08 60.8 12.4 191 97-324 23-219 (228)
51 TIGR02317 prpB methylisocitrat 97.2 0.14 3.1E-06 49.9 22.9 207 74-327 3-252 (285)
52 PRK11320 prpB 2-methylisocitra 97.2 0.22 4.9E-06 48.7 23.9 205 74-325 7-255 (292)
53 TIGR02319 CPEP_Pphonmut carbox 97.2 0.2 4.4E-06 49.1 23.3 207 73-326 5-255 (294)
54 TIGR02320 PEP_mutase phosphoen 97.2 0.25 5.4E-06 48.2 23.7 206 76-325 1-258 (285)
55 COG2225 AceB Malate synthase [ 97.1 0.0089 1.9E-07 62.3 13.6 182 82-286 95-341 (545)
56 cd00377 ICL_PEPM Members of th 97.0 0.14 3.1E-06 48.5 20.4 187 76-308 1-229 (243)
57 PRK13111 trpA tryptophan synth 97.0 0.21 4.5E-06 48.0 21.4 194 76-309 3-232 (258)
58 PRK00278 trpC indole-3-glycero 97.0 0.15 3.2E-06 49.0 20.2 166 96-308 73-243 (260)
59 cd00331 IGPS Indole-3-glycerol 96.8 0.089 1.9E-06 48.5 16.8 166 97-308 35-204 (217)
60 PRK13655 phosphoenolpyruvate c 96.8 0.021 4.5E-07 59.5 13.3 165 98-279 35-236 (494)
61 PRK13125 trpA tryptophan synth 96.8 0.2 4.4E-06 47.4 19.1 184 85-308 4-217 (244)
62 PRK08883 ribulose-phosphate 3- 96.8 0.059 1.3E-06 50.5 15.3 186 97-325 16-214 (220)
63 PF00290 Trp_syntA: Tryptophan 96.7 0.13 2.9E-06 49.5 17.4 196 77-311 2-232 (259)
64 PRK08649 inosine 5-monophospha 96.7 0.075 1.6E-06 53.6 16.1 149 118-307 114-287 (368)
65 TIGR02751 PEPCase_arch phospho 96.6 0.038 8.2E-07 57.7 13.3 175 98-279 33-244 (506)
66 PRK01130 N-acetylmannosamine-6 96.4 0.12 2.6E-06 47.8 14.6 68 94-163 76-145 (221)
67 PF14010 PEPcase_2: Phosphoeno 96.4 0.045 9.8E-07 56.9 12.6 227 99-337 34-313 (491)
68 PLN02334 ribulose-phosphate 3- 96.3 0.14 3.1E-06 47.8 14.3 171 98-308 25-205 (229)
69 PLN02591 tryptophan synthase 96.3 0.95 2.1E-05 43.4 20.1 182 86-308 3-221 (250)
70 TIGR02320 PEP_mutase phosphoen 96.2 0.12 2.6E-06 50.4 14.0 122 98-250 97-247 (285)
71 cd04724 Tryptophan_synthase_al 96.2 0.43 9.4E-06 45.1 17.2 181 88-309 3-219 (242)
72 PRK07028 bifunctional hexulose 96.2 0.077 1.7E-06 54.2 12.9 196 85-326 4-210 (430)
73 cd04726 KGPDC_HPS 3-Keto-L-gul 96.1 0.36 7.9E-06 43.5 15.8 125 83-245 53-188 (202)
74 PRK00043 thiE thiamine-phospha 96.1 0.23 5.1E-06 45.0 14.5 161 98-308 26-191 (212)
75 PRK08745 ribulose-phosphate 3- 96.1 0.29 6.2E-06 46.1 15.3 186 98-325 21-218 (223)
76 cd04730 NPD_like 2-Nitropropan 96.0 0.94 2E-05 41.8 18.4 171 92-310 12-190 (236)
77 PRK01130 N-acetylmannosamine-6 96.0 0.38 8.1E-06 44.5 15.6 123 147-308 78-205 (221)
78 cd00564 TMP_TenI Thiamine mono 96.0 0.8 1.7E-05 40.4 17.2 159 97-308 16-181 (196)
79 COG0036 Rpe Pentose-5-phosphat 95.9 0.28 6E-06 46.2 14.1 188 97-325 20-216 (220)
80 cd00381 IMPDH IMPDH: The catal 95.9 0.32 6.9E-06 48.2 15.3 218 41-307 2-228 (325)
81 TIGR01345 malate_syn_G malate 95.8 0.021 4.6E-07 61.0 6.8 135 157-311 386-545 (721)
82 PRK14057 epimerase; Provisiona 95.8 0.54 1.2E-05 45.2 15.8 198 97-328 36-243 (254)
83 PRK08091 ribulose-phosphate 3- 95.7 0.68 1.5E-05 43.9 15.8 187 97-325 29-226 (228)
84 PRK02999 malate synthase G; Pr 95.5 0.03 6.6E-07 59.9 6.6 135 157-311 389-548 (726)
85 cd00728 malate_synt_G Malate s 95.4 0.033 7.1E-07 59.5 6.4 139 157-316 381-544 (712)
86 TIGR00693 thiE thiamine-phosph 95.3 1.1 2.3E-05 40.4 15.5 161 97-309 17-184 (196)
87 PF00834 Ribul_P_3_epim: Ribul 95.2 0.03 6.6E-07 51.8 5.1 172 97-307 16-196 (201)
88 TIGR02321 Pphn_pyruv_hyd phosp 95.2 3.4 7.4E-05 40.5 22.9 205 74-324 5-255 (290)
89 PRK06512 thiamine-phosphate py 95.1 2.9 6.2E-05 39.2 19.0 158 97-309 30-196 (221)
90 COG0352 ThiE Thiamine monophos 95.1 1.5 3.3E-05 41.0 16.1 163 96-310 24-191 (211)
91 cd00381 IMPDH IMPDH: The catal 95.1 0.66 1.4E-05 45.9 14.5 66 96-163 96-162 (325)
92 PRK06843 inosine 5-monophospha 95.0 2 4.3E-05 44.1 18.0 221 37-308 6-288 (404)
93 PRK08005 epimerase; Validated 95.0 0.67 1.4E-05 43.3 13.4 168 97-306 17-192 (210)
94 PRK09722 allulose-6-phosphate 95.0 1.3 2.7E-05 42.0 15.4 188 98-326 20-219 (229)
95 TIGR03128 RuMP_HxlA 3-hexulose 94.9 0.31 6.7E-06 44.3 10.8 141 144-324 63-204 (206)
96 cd00958 DhnA Class I fructose- 94.9 0.62 1.3E-05 43.4 12.9 117 98-245 81-216 (235)
97 PLN02274 inosine-5'-monophosph 94.8 0.78 1.7E-05 48.3 14.8 79 82-163 234-316 (505)
98 cd00377 ICL_PEPM Members of th 94.7 0.66 1.4E-05 44.0 12.7 119 98-249 89-232 (243)
99 cd04726 KGPDC_HPS 3-Keto-L-gul 94.7 0.85 1.8E-05 41.1 13.0 124 141-308 61-189 (202)
100 TIGR01304 IMP_DH_rel_2 IMP deh 94.6 1.3 2.9E-05 44.7 15.5 150 118-309 115-288 (369)
101 PRK11320 prpB 2-methylisocitra 94.6 0.48 1E-05 46.4 11.9 137 98-278 98-257 (292)
102 PRK04302 triosephosphate isome 94.6 0.64 1.4E-05 43.3 12.3 123 150-309 78-206 (223)
103 COG0159 TrpA Tryptophan syntha 94.5 4.9 0.00011 39.0 22.7 198 74-310 6-238 (265)
104 cd00945 Aldolase_Class_I Class 94.5 2.4 5.3E-05 37.3 15.4 58 98-163 18-84 (201)
105 cd00452 KDPG_aldolase KDPG and 94.4 1.1 2.4E-05 40.6 13.1 152 97-309 20-175 (190)
106 TIGR03128 RuMP_HxlA 3-hexulose 94.4 2.3 5E-05 38.6 15.2 64 98-164 68-133 (206)
107 PF13714 PEP_mutase: Phosphoen 94.4 4.8 0.0001 38.2 22.6 194 76-317 1-229 (238)
108 PRK03512 thiamine-phosphate py 94.2 3.6 7.8E-05 38.2 16.2 170 88-309 14-190 (211)
109 PRK07998 gatY putative fructos 94.1 4.7 0.0001 39.4 17.3 209 74-309 7-233 (283)
110 TIGR02319 CPEP_Pphonmut carbox 93.9 1.7 3.8E-05 42.6 14.0 121 98-250 97-240 (294)
111 cd04722 TIM_phosphate_binding 93.8 1.6 3.5E-05 37.8 12.5 174 96-306 15-200 (200)
112 PF01959 DHQS: 3-dehydroquinat 93.5 0.73 1.6E-05 46.3 10.8 100 79-181 67-169 (354)
113 TIGR01949 AroFGH_arch predicte 93.5 1.1 2.4E-05 42.6 11.8 179 98-330 41-251 (258)
114 PRK13585 1-(5-phosphoribosyl)- 93.4 6.5 0.00014 36.6 16.6 85 92-178 30-121 (241)
115 COG1892 Phosphoenolpyruvate ca 93.4 1.2 2.6E-05 45.8 12.2 236 97-344 35-322 (488)
116 cd04729 NanE N-acetylmannosami 93.4 1.7 3.6E-05 40.2 12.4 66 96-163 82-149 (219)
117 PF13714 PEP_mutase: Phosphoen 93.3 0.94 2E-05 43.1 10.8 120 97-251 89-227 (238)
118 PRK00278 trpC indole-3-glycero 93.2 2.2 4.7E-05 40.9 13.3 77 83-164 111-187 (260)
119 KOG1261 Malate synthase [Energ 93.2 0.16 3.5E-06 51.2 5.7 116 151-286 210-342 (552)
120 TIGR01305 GMP_reduct_1 guanosi 93.2 1.6 3.5E-05 43.7 12.6 68 95-164 108-178 (343)
121 TIGR02317 prpB methylisocitrat 93.1 1.1 2.3E-05 43.9 11.0 121 98-250 93-236 (285)
122 PLN02716 nicotinate-nucleotide 93.1 1 2.2E-05 44.5 11.0 135 74-244 128-291 (308)
123 cd04740 DHOD_1B_like Dihydroor 92.6 9.4 0.0002 36.8 17.0 79 85-163 90-185 (296)
124 PRK15452 putative protease; Pr 92.6 0.72 1.6E-05 47.8 9.6 144 88-248 5-172 (443)
125 PF02581 TMP-TENI: Thiamine mo 92.5 7.6 0.00017 34.7 16.5 158 97-306 16-178 (180)
126 cd02810 DHOD_DHPD_FMN Dihydroo 92.4 6.2 0.00014 37.7 15.3 80 87-166 101-198 (289)
127 PRK07695 transcriptional regul 92.4 8.4 0.00018 35.0 17.2 153 102-309 23-181 (201)
128 PTZ00314 inosine-5'-monophosph 92.3 2.5 5.4E-05 44.4 13.4 79 82-163 227-309 (495)
129 PRK06843 inosine 5-monophospha 92.3 2.6 5.5E-05 43.3 13.0 79 82-163 139-221 (404)
130 PRK09140 2-dehydro-3-deoxy-6-p 92.1 9.9 0.00022 35.2 17.9 172 78-309 5-183 (206)
131 TIGR01302 IMP_dehydrog inosine 92.0 4 8.6E-05 42.2 14.3 79 82-163 210-292 (450)
132 PRK07259 dihydroorotate dehydr 91.9 12 0.00026 36.2 16.8 78 86-163 93-188 (301)
133 PF00072 Response_reg: Respons 91.8 4.2 9.2E-05 31.9 11.4 100 74-176 12-111 (112)
134 PRK08385 nicotinate-nucleotide 91.8 1.6 3.4E-05 42.6 10.4 137 73-244 107-260 (278)
135 PRK12290 thiE thiamine-phospha 91.8 18 0.00039 37.5 18.4 196 87-331 211-417 (437)
136 PLN02898 HMP-P kinase/thiamin- 91.8 19 0.00041 37.7 20.3 160 98-309 312-479 (502)
137 PRK02290 3-dehydroquinate synt 91.4 1.6 3.6E-05 43.6 10.2 95 82-181 62-160 (344)
138 PRK02615 thiamine-phosphate py 91.2 17 0.00036 36.6 17.3 159 98-309 162-326 (347)
139 cd00331 IGPS Indole-3-glycerol 91.2 6.4 0.00014 36.1 13.4 77 83-164 72-148 (217)
140 PRK06801 hypothetical protein; 91.1 16 0.00035 35.7 19.6 209 74-308 7-236 (286)
141 TIGR00007 phosphoribosylformim 91.1 13 0.00027 34.4 17.2 86 94-179 28-118 (230)
142 TIGR01306 GMP_reduct_2 guanosi 91.0 5.1 0.00011 39.9 13.2 67 97-165 97-166 (321)
143 TIGR02321 Pphn_pyruv_hyd phosp 90.9 3 6.6E-05 40.8 11.5 123 98-251 95-243 (290)
144 TIGR01304 IMP_DH_rel_2 IMP deh 90.7 3.6 7.9E-05 41.7 12.1 64 95-162 144-214 (369)
145 PRK06978 nicotinate-nucleotide 90.7 1.3 2.7E-05 43.6 8.5 132 74-244 132-278 (294)
146 PRK05567 inosine 5'-monophosph 90.7 7.1 0.00015 40.8 14.7 179 97-308 169-363 (486)
147 PRK07107 inosine 5-monophospha 90.5 4.7 0.0001 42.5 13.2 87 73-163 222-311 (502)
148 COG2197 CitB Response regulato 90.5 7 0.00015 36.1 13.0 104 74-180 14-118 (211)
149 cd04722 TIM_phosphate_binding 90.2 10 0.00022 32.7 13.3 64 100-164 78-143 (200)
150 cd04729 NanE N-acetylmannosami 90.2 10 0.00022 34.9 13.8 123 147-308 82-209 (219)
151 PTZ00398 phosphoenolpyruvate c 90.2 0.62 1.4E-05 52.6 6.7 97 159-279 547-658 (974)
152 PRK06559 nicotinate-nucleotide 89.9 1.4 3E-05 43.3 8.0 132 74-244 123-270 (290)
153 cd02809 alpha_hydroxyacid_oxid 89.7 8.5 0.00019 37.4 13.5 66 98-164 134-200 (299)
154 COG2513 PrpB PEP phosphonomuta 89.6 8.4 0.00018 37.8 13.1 116 119-277 130-256 (289)
155 TIGR01305 GMP_reduct_1 guanosi 89.5 15 0.00033 36.9 15.1 223 40-305 7-241 (343)
156 PRK06852 aldolase; Validated 89.4 24 0.00051 35.0 17.9 94 125-245 157-267 (304)
157 PRK04302 triosephosphate isome 89.4 11 0.00025 34.9 13.6 119 97-247 76-206 (223)
158 PRK00009 phosphoenolpyruvate c 89.3 0.95 2.1E-05 50.9 7.2 101 158-279 487-601 (911)
159 PRK06543 nicotinate-nucleotide 89.3 1.2 2.6E-05 43.5 7.1 133 74-244 115-266 (281)
160 PLN02274 inosine-5'-monophosph 89.1 13 0.00028 39.3 15.0 177 96-308 185-383 (505)
161 PF01729 QRPTase_C: Quinolinat 88.7 0.27 5.9E-06 44.3 2.1 135 75-245 7-157 (169)
162 PRK05742 nicotinate-nucleotide 88.6 2.3 5E-05 41.4 8.5 132 74-244 116-262 (277)
163 COG3010 NanE Putative N-acetyl 88.5 22 0.00048 33.5 15.0 128 149-317 90-221 (229)
164 PRK09427 bifunctional indole-3 88.5 12 0.00027 38.9 14.3 67 95-165 121-187 (454)
165 PRK13307 bifunctional formalde 88.4 13 0.00027 38.1 14.0 143 141-328 234-380 (391)
166 PF00478 IMPDH: IMP dehydrogen 88.3 3.3 7.1E-05 41.7 9.6 81 82-164 94-177 (352)
167 COG0352 ThiE Thiamine monophos 88.2 3.2 6.9E-05 38.9 8.9 90 72-163 92-185 (211)
168 cd06556 ICL_KPHMT Members of t 88.2 3.5 7.7E-05 39.2 9.4 77 99-182 95-193 (240)
169 TIGR01769 GGGP geranylgeranylg 88.0 17 0.00037 33.8 13.6 70 98-174 16-86 (205)
170 cd00405 PRAI Phosphoribosylant 87.7 21 0.00047 32.4 16.8 88 91-178 4-94 (203)
171 PTZ00314 inosine-5'-monophosph 87.6 5.1 0.00011 42.1 10.9 72 92-165 289-374 (495)
172 PRK07226 fructose-bisphosphate 87.4 14 0.0003 35.4 13.0 178 98-329 44-254 (267)
173 cd02801 DUS_like_FMN Dihydrour 87.3 15 0.00032 33.6 12.9 77 87-163 57-157 (231)
174 PRK08185 hypothetical protein; 87.3 31 0.00066 33.8 20.0 212 76-309 4-232 (283)
175 PRK10840 transcriptional regul 87.2 17 0.00038 32.6 13.0 103 74-180 17-124 (216)
176 PRK07896 nicotinate-nucleotide 87.1 1.2 2.7E-05 43.6 5.7 136 73-244 125-275 (289)
177 COG0157 NadC Nicotinate-nucleo 87.1 3.8 8.3E-05 39.9 9.0 134 75-244 115-263 (280)
178 PRK09195 gatY tagatose-bisphos 86.9 33 0.00071 33.6 19.3 213 74-309 7-236 (284)
179 PRK06806 fructose-bisphosphate 86.8 32 0.0007 33.5 19.6 218 75-323 8-245 (281)
180 PRK12857 fructose-1,6-bisphosp 86.8 33 0.00072 33.5 19.4 212 74-308 7-235 (284)
181 PRK07428 nicotinate-nucleotide 86.7 5.7 0.00012 38.9 10.0 138 74-245 122-273 (288)
182 PF00478 IMPDH: IMP dehydrogen 86.6 38 0.00083 34.2 19.4 183 84-306 38-241 (352)
183 PRK07807 inosine 5-monophospha 86.5 15 0.00032 38.6 13.5 89 212-306 268-360 (479)
184 PRK05835 fructose-bisphosphate 86.3 37 0.0008 33.7 19.2 105 75-181 7-126 (307)
185 PRK12737 gatY tagatose-bisphos 86.2 35 0.00077 33.3 20.3 213 74-309 7-236 (284)
186 PRK07259 dihydroorotate dehydr 86.0 29 0.00064 33.5 14.7 156 121-308 76-266 (301)
187 TIGR01303 IMP_DH_rel_1 IMP deh 86.0 4 8.6E-05 42.7 9.1 79 82-163 211-293 (475)
188 PRK08649 inosine 5-monophospha 86.0 5.8 0.00012 40.2 10.0 66 95-164 143-215 (368)
189 PRK10550 tRNA-dihydrouridine s 85.6 36 0.00077 33.6 15.2 80 84-163 62-167 (312)
190 PRK08227 autoinducer 2 aldolas 85.6 37 0.00079 32.9 17.1 116 99-245 100-228 (264)
191 TIGR01949 AroFGH_arch predicte 85.5 20 0.00043 34.0 13.0 117 98-245 95-229 (258)
192 PRK09196 fructose-1,6-bisphosp 85.4 44 0.00095 33.7 17.7 106 74-181 7-134 (347)
193 cd04732 HisA HisA. Phosphorib 85.3 30 0.00065 31.8 15.7 85 92-179 27-119 (234)
194 PRK09016 quinolinate phosphori 85.1 3 6.4E-05 41.1 7.2 132 74-244 135-281 (296)
195 PRK12738 kbaY tagatose-bisphos 85.1 40 0.00087 33.0 19.2 211 76-309 9-236 (286)
196 PRK05567 inosine 5'-monophosph 85.1 27 0.00059 36.5 14.8 65 96-163 230-296 (486)
197 PRK10360 DNA-binding transcrip 85.0 24 0.00052 30.3 12.7 101 74-180 15-116 (196)
198 PRK06106 nicotinate-nucleotide 84.6 2.5 5.4E-05 41.3 6.4 132 74-244 120-267 (281)
199 PRK08999 hypothetical protein; 84.5 40 0.00086 32.6 14.8 157 98-307 149-310 (312)
200 COG5016 Pyruvate/oxaloacetate 84.5 11 0.00024 38.7 11.1 138 72-240 75-228 (472)
201 cd04740 DHOD_1B_like Dihydroor 84.4 35 0.00076 32.8 14.3 153 122-308 75-263 (296)
202 TIGR01037 pyrD_sub1_fam dihydr 84.4 37 0.0008 32.8 14.5 23 286-308 244-266 (300)
203 PRK07315 fructose-bisphosphate 84.3 44 0.00095 32.8 21.7 224 74-326 7-250 (293)
204 PRK13587 1-(5-phosphoribosyl)- 84.3 37 0.00081 31.9 16.2 85 94-178 31-121 (234)
205 PRK07428 nicotinate-nucleotide 84.2 9.8 0.00021 37.3 10.3 74 88-165 198-272 (288)
206 cd00958 DhnA Class I fructose- 84.1 18 0.00039 33.5 11.8 73 221-309 141-218 (235)
207 cd02940 DHPD_FMN Dihydropyrimi 83.9 44 0.00095 32.5 16.0 80 84-163 100-199 (299)
208 cd02810 DHOD_DHPD_FMN Dihydroo 83.9 14 0.0003 35.3 11.2 62 119-180 80-158 (289)
209 PRK10046 dpiA two-component re 83.8 32 0.0007 31.3 13.2 85 93-179 37-121 (225)
210 PRK06096 molybdenum transport 83.4 4.2 9E-05 39.8 7.4 137 74-245 111-266 (284)
211 PRK05848 nicotinate-nucleotide 83.3 2.3 5.1E-05 41.3 5.6 136 74-245 108-259 (273)
212 cd02803 OYE_like_FMN_family Ol 83.2 12 0.00027 36.3 10.7 67 97-163 145-247 (327)
213 PRK06552 keto-hydroxyglutarate 83.2 38 0.00083 31.6 13.5 107 92-245 74-185 (213)
214 KOG4175 Tryptophan synthase al 83.1 42 0.00092 31.7 19.3 196 74-311 7-241 (268)
215 cd04739 DHOD_like Dihydroorota 83.0 19 0.00041 35.6 12.0 78 86-163 101-194 (325)
216 cd04730 NPD_like 2-Nitropropan 82.7 11 0.00023 34.8 9.6 87 74-164 92-185 (236)
217 cd01573 modD_like ModD; Quinol 82.7 12 0.00025 36.3 10.1 74 89-166 186-260 (272)
218 cd06556 ICL_KPHMT Members of t 82.6 45 0.00098 31.7 15.2 86 76-163 4-108 (240)
219 PRK05096 guanosine 5'-monophos 82.2 59 0.0013 32.8 16.8 187 83-306 46-243 (346)
220 PRK07709 fructose-bisphosphate 82.0 54 0.0012 32.1 19.1 208 75-308 8-236 (285)
221 PRK08072 nicotinate-nucleotide 81.6 24 0.00053 34.3 11.9 136 73-244 113-261 (277)
222 cd01572 QPRTase Quinolinate ph 81.6 10 0.00023 36.6 9.4 82 74-164 173-254 (268)
223 cd04732 HisA HisA. Phosphorib 81.5 39 0.00085 31.0 13.0 72 92-167 81-169 (234)
224 PRK09250 fructose-bisphosphate 81.5 63 0.0014 32.6 17.4 52 124-175 181-248 (348)
225 PF07015 VirC1: VirC1 protein; 81.4 3.4 7.4E-05 39.3 5.8 54 100-182 77-130 (231)
226 TIGR00419 tim triosephosphate 81.4 20 0.00044 33.4 10.8 120 98-247 73-202 (205)
227 PRK07807 inosine 5-monophospha 81.3 11 0.00024 39.4 10.1 86 77-163 259-358 (479)
228 cd03174 DRE_TIM_metallolyase D 81.3 33 0.00072 31.9 12.6 86 80-168 5-98 (265)
229 PRK07028 bifunctional hexulose 81.3 68 0.0015 32.8 16.4 89 73-164 45-138 (430)
230 PRK14565 triosephosphate isome 81.2 27 0.00059 33.3 11.8 118 98-247 77-222 (237)
231 PRK08072 nicotinate-nucleotide 81.0 15 0.00032 35.8 10.2 73 86-166 190-262 (277)
232 TIGR01858 tag_bisphos_ald clas 81.0 58 0.0013 31.8 19.1 211 76-309 7-234 (282)
233 cd01568 QPRTase_NadC Quinolina 80.7 18 0.00038 34.9 10.6 72 88-163 183-254 (269)
234 TIGR01302 IMP_dehydrog inosine 80.7 30 0.00066 35.8 13.0 130 146-308 225-359 (450)
235 PRK05458 guanosine 5'-monophos 80.5 8 0.00017 38.6 8.3 66 97-165 100-169 (326)
236 PRK06552 keto-hydroxyglutarate 80.2 40 0.00087 31.4 12.5 171 76-308 6-186 (213)
237 cd04723 HisA_HisF Phosphoribos 80.1 52 0.0011 30.8 15.7 73 93-166 34-109 (233)
238 TIGR03151 enACPred_II putative 79.9 21 0.00045 35.1 11.0 88 73-163 98-189 (307)
239 PRK05742 nicotinate-nucleotide 79.9 14 0.0003 36.1 9.5 71 89-165 192-262 (277)
240 TIGR00735 hisF imidazoleglycer 79.6 57 0.0012 30.9 17.5 87 93-179 29-120 (254)
241 COG3707 AmiR Response regulato 79.5 14 0.0003 34.3 8.9 87 76-166 21-108 (194)
242 PRK15447 putative protease; Pr 79.4 6.7 0.00014 38.4 7.3 86 89-177 10-105 (301)
243 TIGR01334 modD putative molybd 79.1 19 0.00042 35.0 10.3 137 73-244 109-264 (277)
244 PRK07455 keto-hydroxyglutarate 79.0 50 0.0011 29.9 16.2 173 75-308 4-183 (187)
245 cd00947 TBP_aldolase_IIB Tagat 78.9 67 0.0015 31.3 20.6 208 76-308 4-229 (276)
246 cd04738 DHOD_2_like Dihydrooro 78.9 33 0.00072 33.8 12.1 164 120-308 113-312 (327)
247 TIGR03239 GarL 2-dehydro-3-deo 78.8 11 0.00023 36.1 8.3 100 78-181 56-160 (249)
248 PRK13125 trpA tryptophan synth 78.3 25 0.00053 33.2 10.6 63 93-157 87-152 (244)
249 PRK08610 fructose-bisphosphate 78.2 72 0.0016 31.3 18.9 209 75-309 8-237 (286)
250 TIGR01768 GGGP-family geranylg 78.1 6 0.00013 37.4 6.3 73 95-174 16-88 (223)
251 cd04733 OYE_like_2_FMN Old yel 77.8 50 0.0011 32.6 13.1 28 218-245 297-324 (338)
252 cd00452 KDPG_aldolase KDPG and 77.7 53 0.0012 29.5 14.1 68 85-163 56-123 (190)
253 PRK07695 transcriptional regul 77.4 16 0.00035 33.1 8.8 82 74-163 87-176 (201)
254 KOG3111 D-ribulose-5-phosphate 77.4 46 0.001 31.1 11.5 172 97-308 21-200 (224)
255 PRK05096 guanosine 5'-monophos 77.2 13 0.00028 37.4 8.6 66 96-163 110-178 (346)
256 PLN02591 tryptophan synthase 77.2 34 0.00073 32.8 11.2 90 74-163 121-217 (250)
257 cd04728 ThiG Thiazole synthase 77.2 12 0.00026 36.0 8.0 70 91-164 129-204 (248)
258 TIGR02154 PhoB phosphate regul 76.8 50 0.0011 28.7 11.9 103 74-179 16-119 (226)
259 cd00430 PLPDE_III_AR Type III 76.8 81 0.0018 31.2 14.8 92 74-180 16-113 (367)
260 PRK01033 imidazole glycerol ph 76.5 71 0.0015 30.4 16.7 86 94-179 30-120 (258)
261 cd02922 FCB2_FMN Flavocytochro 76.4 84 0.0018 31.5 14.2 30 134-164 212-241 (344)
262 PLN02429 triosephosphate isome 76.3 42 0.00091 33.4 11.8 128 98-247 139-296 (315)
263 cd00311 TIM Triosephosphate is 76.3 27 0.00058 33.3 10.2 129 98-247 76-232 (242)
264 PF03437 BtpA: BtpA family; I 75.4 37 0.0008 32.8 10.9 126 84-245 80-229 (254)
265 TIGR00078 nadC nicotinate-nucl 74.9 23 0.00051 34.1 9.5 71 85-163 179-249 (265)
266 TIGR01303 IMP_DH_rel_1 IMP deh 74.2 93 0.002 32.7 14.4 135 139-307 219-359 (475)
267 PRK11572 copper homeostasis pr 74.1 86 0.0019 30.2 17.9 173 91-305 6-198 (248)
268 PF01116 F_bP_aldolase: Fructo 74.1 8.1 0.00018 37.8 6.2 211 75-309 4-239 (287)
269 PRK09935 transcriptional regul 73.9 58 0.0012 28.1 13.3 104 74-180 17-121 (210)
270 PRK15452 putative protease; Pr 73.7 46 0.001 34.6 11.9 40 142-181 8-57 (443)
271 cd02940 DHPD_FMN Dihydropyrimi 73.7 91 0.002 30.2 14.2 141 135-307 99-283 (299)
272 TIGR00736 nifR3_rel_arch TIM-b 73.6 84 0.0018 29.8 13.9 78 86-163 69-167 (231)
273 PLN02389 biotin synthase 73.5 1.1E+02 0.0024 31.1 15.9 197 101-325 127-350 (379)
274 PF01645 Glu_synthase: Conserv 73.4 16 0.00034 37.2 8.2 199 74-308 80-306 (368)
275 PRK07565 dihydroorotate dehydr 73.4 47 0.001 32.8 11.5 66 98-163 119-196 (334)
276 PRK09517 multifunctional thiam 73.3 1.5E+02 0.0034 32.8 19.3 166 97-309 23-198 (755)
277 cd07944 DRE_TIM_HOA_like 4-hyd 73.3 89 0.0019 29.9 13.2 107 72-180 57-177 (266)
278 TIGR01521 FruBisAldo_II_B fruc 72.7 1.1E+02 0.0024 30.9 18.3 105 75-181 6-132 (347)
279 PF02254 TrkA_N: TrkA-N domain 72.6 44 0.00095 26.9 9.5 84 73-164 31-116 (116)
280 cd06557 KPHMT-like Ketopantoat 72.6 30 0.00065 33.3 9.6 76 100-182 98-195 (254)
281 COG2513 PrpB PEP phosphonomuta 72.5 1E+02 0.0022 30.4 22.1 88 72-163 6-112 (289)
282 cd01568 QPRTase_NadC Quinolina 72.4 19 0.00041 34.7 8.3 101 107-244 151-256 (269)
283 cd01572 QPRTase Quinolinate ph 72.2 7.9 0.00017 37.4 5.6 102 107-244 152-255 (268)
284 cd06557 KPHMT-like Ketopantoat 72.2 75 0.0016 30.6 12.2 102 74-180 2-124 (254)
285 TIGR02495 NrdG2 anaerobic ribo 72.1 59 0.0013 28.8 11.0 81 85-180 91-180 (191)
286 cd07948 DRE_TIM_HCS Saccharomy 72.0 96 0.0021 29.8 14.1 80 80-165 8-92 (262)
287 CHL00200 trpA tryptophan synth 71.4 54 0.0012 31.6 11.1 91 73-163 133-230 (263)
288 TIGR03787 marine_sort_RR prote 71.3 73 0.0016 28.1 12.4 102 74-179 14-117 (227)
289 cd00564 TMP_TenI Thiamine mono 71.2 21 0.00045 31.3 7.7 74 85-164 96-178 (196)
290 PRK05848 nicotinate-nucleotide 70.7 43 0.00093 32.6 10.3 75 87-165 183-258 (273)
291 PRK10558 alpha-dehydro-beta-de 70.7 35 0.00075 32.7 9.6 96 80-181 65-167 (256)
292 PRK11517 transcriptional regul 70.5 73 0.0016 27.8 12.3 101 74-179 14-114 (223)
293 PRK01222 N-(5'-phosphoribosyl) 70.5 90 0.002 28.9 14.1 87 91-178 8-98 (210)
294 cd04727 pdxS PdxS is a subunit 70.2 92 0.002 30.6 12.3 107 147-305 18-139 (283)
295 PF00977 His_biosynth: Histidi 70.2 27 0.00058 32.6 8.6 191 91-306 26-221 (229)
296 PRK00366 ispG 4-hydroxy-3-meth 70.2 78 0.0017 32.1 12.1 124 149-321 47-199 (360)
297 PRK00311 panB 3-methyl-2-oxobu 70.1 37 0.0008 32.9 9.7 76 100-182 101-198 (264)
298 COG0191 Fba Fructose/tagatose 69.9 1.2E+02 0.0025 29.9 19.1 212 74-310 7-239 (286)
299 COG0826 Collagenase and relate 69.4 22 0.00048 35.7 8.3 75 235-315 25-108 (347)
300 PRK12330 oxaloacetate decarbox 69.4 37 0.00081 35.9 10.2 83 96-180 100-194 (499)
301 PLN02561 triosephosphate isome 69.3 58 0.0013 31.4 10.7 130 98-247 80-237 (253)
302 TIGR00736 nifR3_rel_arch TIM-b 69.1 71 0.0015 30.3 11.2 67 97-164 152-220 (231)
303 TIGR03217 4OH_2_O_val_ald 4-hy 69.0 1.3E+02 0.0028 30.0 15.4 101 80-180 10-124 (333)
304 PRK00043 thiE thiamine-phospha 69.0 28 0.00061 31.3 8.3 75 84-163 104-187 (212)
305 PRK09836 DNA-binding transcrip 68.8 83 0.0018 27.8 12.3 162 74-251 14-179 (227)
306 PRK10128 2-keto-3-deoxy-L-rham 68.7 38 0.00083 32.8 9.5 100 79-182 63-168 (267)
307 PTZ00333 triosephosphate isome 68.6 62 0.0013 31.1 10.8 130 98-247 81-240 (255)
308 cd02911 arch_FMN Archeal FMN-b 68.6 1E+02 0.0022 29.0 12.2 84 79-162 67-170 (233)
309 CHL00148 orf27 Ycf27; Reviewed 68.5 85 0.0018 27.8 12.0 101 74-179 20-120 (240)
310 PRK11475 DNA-binding transcrip 68.4 60 0.0013 29.9 10.4 102 75-180 5-113 (207)
311 PRK13399 fructose-1,6-bisphosp 68.2 1.4E+02 0.003 30.2 19.1 106 74-181 7-134 (347)
312 PLN02495 oxidoreductase, actin 68.1 28 0.0006 35.5 8.7 84 84-169 114-217 (385)
313 COG0826 Collagenase and relate 68.0 60 0.0013 32.7 11.0 34 147-180 127-160 (347)
314 PRK14567 triosephosphate isome 67.9 67 0.0015 30.9 10.9 129 98-247 77-235 (253)
315 COG5016 Pyruvate/oxaloacetate 67.8 47 0.001 34.4 10.1 107 72-180 123-252 (472)
316 TIGR00167 cbbA ketose-bisphosp 67.4 1.3E+02 0.0028 29.5 21.7 208 75-309 8-240 (288)
317 PRK02615 thiamine-phosphate py 67.3 22 0.00048 35.8 7.8 73 85-163 241-321 (347)
318 PF01791 DeoC: DeoC/LacD famil 67.3 37 0.00081 31.6 8.9 167 98-306 24-231 (236)
319 PF00290 Trp_syntA: Tryptophan 67.2 88 0.0019 30.2 11.5 89 74-163 130-225 (259)
320 TIGR00612 ispG_gcpE 1-hydroxy- 66.9 1.1E+02 0.0023 31.0 12.2 123 149-321 39-190 (346)
321 TIGR01163 rpe ribulose-phospha 66.9 95 0.0021 27.7 14.9 72 87-163 61-132 (210)
322 PRK10529 DNA-binding transcrip 66.4 92 0.002 27.4 12.3 99 74-178 15-114 (225)
323 COG1830 FbaB DhnA-type fructos 66.2 58 0.0013 31.7 10.0 118 99-245 103-239 (265)
324 PRK07226 fructose-bisphosphate 66.2 1.2E+02 0.0027 28.8 13.8 117 98-245 98-233 (267)
325 cd04724 Tryptophan_synthase_al 66.1 1.2E+02 0.0026 28.6 14.6 56 96-156 94-151 (242)
326 PRK13111 trpA tryptophan synth 66.0 1.3E+02 0.0028 28.9 14.1 120 96-251 107-235 (258)
327 PRK08195 4-hyroxy-2-oxovalerat 65.8 63 0.0014 32.2 10.6 101 80-180 11-125 (337)
328 PRK13813 orotidine 5'-phosphat 65.8 19 0.00041 32.9 6.5 32 150-181 73-104 (215)
329 TIGR00693 thiE thiamine-phosph 65.8 39 0.00084 30.2 8.4 84 74-163 87-179 (196)
330 PRK00208 thiG thiazole synthas 65.5 30 0.00064 33.4 7.8 85 91-179 129-224 (250)
331 PRK10643 DNA-binding transcrip 65.3 92 0.002 27.0 12.1 100 75-179 15-115 (222)
332 PRK12581 oxaloacetate decarbox 65.3 25 0.00054 36.8 7.9 106 73-181 83-203 (468)
333 PRK15479 transcriptional regul 65.2 92 0.002 27.0 11.5 102 74-179 14-115 (221)
334 PRK00311 panB 3-methyl-2-oxobu 65.1 1.4E+02 0.003 29.0 12.8 89 73-163 4-113 (264)
335 cd07944 DRE_TIM_HOA_like 4-hyd 64.7 1.3E+02 0.0029 28.7 16.6 101 80-180 6-119 (266)
336 TIGR01387 cztR_silR_copR heavy 64.6 94 0.002 26.9 12.6 165 75-252 13-177 (218)
337 PF02662 FlpD: Methyl-viologen 64.0 8.2 0.00018 33.0 3.5 31 137-167 29-62 (124)
338 cd02932 OYE_YqiM_FMN Old yello 63.9 57 0.0012 32.2 9.9 30 217-246 294-323 (336)
339 PRK10161 transcriptional regul 63.7 1.1E+02 0.0023 27.1 12.2 101 75-179 17-119 (229)
340 PF04131 NanE: Putative N-acet 63.6 60 0.0013 30.1 9.2 88 74-163 82-172 (192)
341 cd07943 DRE_TIM_HOA 4-hydroxy- 63.5 1.4E+02 0.003 28.4 15.7 101 80-180 8-122 (263)
342 PRK04180 pyridoxal biosynthesi 63.4 1E+02 0.0022 30.5 11.1 90 74-169 10-108 (293)
343 KOG1606 Stationary phase-induc 63.2 1.4E+02 0.0031 28.4 12.5 98 210-308 123-241 (296)
344 TIGR00737 nifR3_yhdG putative 63.1 1.5E+02 0.0033 28.8 15.0 80 83-163 61-166 (319)
345 PRK09958 DNA-binding transcrip 63.1 99 0.0022 26.6 12.9 102 75-180 15-117 (204)
346 PRK13958 N-(5'-phosphoribosyl) 63.0 69 0.0015 29.6 9.7 86 91-177 6-95 (207)
347 cd02933 OYE_like_FMN Old yello 63.0 1.4E+02 0.0031 29.6 12.6 21 97-117 156-176 (338)
348 PF00311 PEPcase: Phosphoenolp 62.7 13 0.00027 41.6 5.4 100 160-280 366-479 (794)
349 PLN02858 fructose-bisphosphate 62.7 3.3E+02 0.0072 32.6 17.4 216 74-309 1103-1335(1378)
350 cd00405 PRAI Phosphoribosylant 62.6 30 0.00066 31.4 7.2 84 75-164 42-127 (203)
351 PRK02290 3-dehydroquinate synt 62.5 40 0.00086 34.0 8.4 79 160-247 68-148 (344)
352 PRK13957 indole-3-glycerol-pho 62.2 45 0.00098 32.0 8.5 67 93-163 111-177 (247)
353 cd02811 IDI-2_FMN Isopentenyl- 62.1 1.7E+02 0.0036 28.9 16.7 71 95-165 128-210 (326)
354 PRK06015 keto-hydroxyglutarate 62.0 56 0.0012 30.3 8.8 105 166-306 12-125 (201)
355 TIGR00078 nadC nicotinate-nucl 61.9 23 0.00049 34.2 6.5 135 74-244 104-251 (265)
356 cd04743 NPD_PKS 2-Nitropropane 61.9 84 0.0018 31.4 10.5 112 147-303 17-128 (320)
357 COG0800 Eda 2-keto-3-deoxy-6-p 61.9 90 0.0019 29.4 10.1 34 268-302 97-130 (211)
358 PRK10693 response regulator of 61.8 82 0.0018 30.5 10.4 83 97-180 8-90 (303)
359 PF00701 DHDPS: Dihydrodipicol 61.5 1.5E+02 0.0033 28.3 16.6 164 97-307 26-207 (289)
360 PRK07896 nicotinate-nucleotide 61.4 59 0.0013 31.9 9.3 73 89-165 202-275 (289)
361 TIGR03572 WbuZ glycosyl amidat 61.4 1.4E+02 0.0029 27.6 17.2 82 94-178 30-119 (232)
362 cd04737 LOX_like_FMN L-Lactate 61.3 1.9E+02 0.0041 29.2 17.1 32 212-245 276-307 (351)
363 KOG2550 IMP dehydrogenase/GMP 61.1 88 0.0019 32.5 10.6 70 95-166 252-322 (503)
364 PRK10816 DNA-binding transcrip 61.0 1.2E+02 0.0025 26.7 12.5 101 74-179 14-115 (223)
365 PRK05458 guanosine 5'-monophos 60.9 1.8E+02 0.004 29.0 15.8 170 94-306 49-231 (326)
366 PLN02334 ribulose-phosphate 3- 60.8 1E+02 0.0022 28.5 10.6 90 74-163 105-201 (229)
367 PRK10766 DNA-binding transcrip 60.6 1.2E+02 0.0025 26.6 11.9 99 74-178 16-115 (221)
368 PRK10701 DNA-binding transcrip 60.5 1.3E+02 0.0027 27.0 12.7 99 74-177 15-113 (240)
369 cd06811 PLPDE_III_yhfX_like Ty 60.5 1.9E+02 0.0042 29.1 19.4 94 73-180 42-140 (382)
370 COG0135 TrpF Phosphoribosylant 60.1 1.1E+02 0.0025 28.5 10.6 87 91-179 7-97 (208)
371 cd01573 modD_like ModD; Quinol 59.9 93 0.002 30.1 10.3 68 144-244 190-259 (272)
372 cd06812 PLPDE_III_DSD_D-TA_lik 59.8 1E+02 0.0022 30.6 10.9 98 73-180 20-119 (374)
373 PF02581 TMP-TENI: Thiamine mo 59.8 20 0.00044 32.0 5.4 88 73-163 85-176 (180)
374 PRK07107 inosine 5-monophospha 59.5 38 0.00082 35.8 8.1 85 208-305 227-312 (502)
375 PF00218 IGPS: Indole-3-glycer 59.3 36 0.00078 32.7 7.3 67 93-163 118-184 (254)
376 PRK08318 dihydropyrimidine deh 59.3 51 0.0011 33.6 8.8 65 99-163 119-199 (420)
377 PRK14114 1-(5-phosphoribosyl)- 59.2 78 0.0017 30.0 9.5 85 91-175 27-115 (241)
378 COG3010 NanE Putative N-acetyl 59.2 84 0.0018 29.7 9.3 144 25-180 76-227 (229)
379 cd07939 DRE_TIM_NifV Streptomy 58.9 1.2E+02 0.0025 28.8 10.7 95 85-180 62-178 (259)
380 KOG3974 Predicted sugar kinase 58.8 70 0.0015 31.3 9.0 92 215-319 82-176 (306)
381 cd04737 LOX_like_FMN L-Lactate 58.8 50 0.0011 33.3 8.5 68 93-163 229-304 (351)
382 TIGR01037 pyrD_sub1_fam dihydr 58.6 1.5E+02 0.0033 28.5 11.6 77 87-163 93-188 (300)
383 cd03174 DRE_TIM_metallolyase D 58.5 1.5E+02 0.0034 27.4 13.4 108 73-181 53-186 (265)
384 PRK04169 geranylgeranylglycery 58.4 14 0.0003 35.1 4.2 191 94-306 20-214 (232)
385 PRK10336 DNA-binding transcrip 58.4 1.2E+02 0.0027 26.2 12.8 102 74-179 14-115 (219)
386 cd06826 PLPDE_III_AR2 Type III 58.2 2E+02 0.0044 28.6 13.0 73 95-180 41-113 (365)
387 TIGR01334 modD putative molybd 58.2 88 0.0019 30.5 9.8 74 89-166 191-265 (277)
388 cd06820 PLPDE_III_LS_D-TA_like 58.2 1.9E+02 0.0042 28.3 16.8 98 73-180 17-116 (353)
389 PRK02506 dihydroorotate dehydr 58.1 1.8E+02 0.004 28.4 12.2 163 120-309 75-274 (310)
390 cd00959 DeoC 2-deoxyribose-5-p 58.0 66 0.0014 29.4 8.6 116 149-305 74-203 (203)
391 PF03932 CutC: CutC family; I 58.0 29 0.00063 32.2 6.2 174 91-305 5-199 (201)
392 TIGR01182 eda Entner-Doudoroff 57.5 88 0.0019 29.1 9.3 118 132-305 6-128 (204)
393 PRK06512 thiamine-phosphate py 57.4 58 0.0013 30.5 8.2 87 74-163 101-191 (221)
394 cd04738 DHOD_2_like Dihydrooro 57.2 1E+02 0.0023 30.3 10.4 66 98-163 150-235 (327)
395 PRK07455 keto-hydroxyglutarate 57.2 47 0.001 30.2 7.4 67 93-163 112-179 (187)
396 TIGR00222 panB 3-methyl-2-oxob 57.0 84 0.0018 30.5 9.4 74 102-182 102-197 (263)
397 TIGR00262 trpA tryptophan synt 57.0 1.7E+02 0.0036 28.0 11.4 89 73-163 129-226 (256)
398 TIGR02311 HpaI 2,4-dihydroxyhe 56.7 74 0.0016 30.2 9.0 91 87-181 65-161 (249)
399 TIGR03765 ICE_PFL_4695 integra 56.6 21 0.00046 29.9 4.5 42 211-254 51-92 (105)
400 PF04551 GcpE: GcpE protein; 56.4 1.3E+02 0.0028 30.6 10.8 138 149-323 36-201 (359)
401 cd02930 DCR_FMN 2,4-dienoyl-Co 56.3 1.3E+02 0.0028 29.9 11.0 31 217-247 280-310 (353)
402 PRK13585 1-(5-phosphoribosyl)- 56.2 1.7E+02 0.0036 27.0 12.9 92 72-166 64-171 (241)
403 COG1465 Predicted alternative 56.2 96 0.0021 30.9 9.6 104 73-181 84-191 (376)
404 PLN02746 hydroxymethylglutaryl 56.1 2.3E+02 0.005 28.6 14.0 100 221-326 123-239 (347)
405 TIGR02660 nifV_homocitr homoci 55.9 1.1E+02 0.0024 30.6 10.5 184 80-305 9-217 (365)
406 PRK00694 4-hydroxy-3-methylbut 55.9 2.1E+02 0.0045 31.0 12.7 142 149-323 50-228 (606)
407 PRK09483 response regulator; P 55.8 1.4E+02 0.003 26.0 13.2 103 74-180 15-119 (217)
408 PRK08385 nicotinate-nucleotide 55.2 94 0.002 30.4 9.5 74 88-165 184-260 (278)
409 cd04731 HisF The cyclase subun 55.1 1.8E+02 0.0038 27.0 17.0 84 95-179 28-117 (243)
410 PRK05286 dihydroorotate dehydr 55.1 1.6E+02 0.0034 29.4 11.3 27 281-308 295-321 (344)
411 PRK00748 1-(5-phosphoribosyl)- 54.7 1.7E+02 0.0037 26.7 15.9 83 93-179 29-120 (233)
412 cd02809 alpha_hydroxyacid_oxid 54.6 1.5E+02 0.0032 28.8 10.9 72 93-165 180-257 (299)
413 PRK09140 2-dehydro-3-deoxy-6-p 54.6 1.8E+02 0.0039 26.9 12.5 67 93-162 111-177 (206)
414 TIGR00222 panB 3-methyl-2-oxob 54.6 1.7E+02 0.0036 28.5 11.0 102 73-179 4-125 (263)
415 PRK10651 transcriptional regul 53.8 1.4E+02 0.0031 25.5 13.1 104 74-180 20-124 (216)
416 PRK11083 DNA-binding response 53.5 1.5E+02 0.0033 25.7 12.3 101 75-179 18-118 (228)
417 PRK03170 dihydrodipicolinate s 53.3 1.7E+02 0.0037 28.1 11.0 67 97-163 26-102 (292)
418 PRK07565 dihydroorotate dehydr 53.3 2.3E+02 0.0051 27.8 18.5 44 120-163 85-133 (334)
419 TIGR01235 pyruv_carbox pyruvat 53.2 27 0.00058 40.6 6.2 106 72-180 602-728 (1143)
420 TIGR00737 nifR3_yhdG putative 53.0 2.3E+02 0.005 27.6 13.5 69 94-163 19-94 (319)
421 TIGR01859 fruc_bis_ald_ fructo 53.0 2.3E+02 0.0049 27.6 20.4 209 76-309 7-234 (282)
422 PLN02428 lipoic acid synthase 52.9 2E+02 0.0043 29.1 11.6 125 97-245 137-284 (349)
423 cd00956 Transaldolase_FSA Tran 52.8 1.8E+02 0.0038 27.0 10.6 73 93-165 109-186 (211)
424 TIGR01036 pyrD_sub2 dihydrooro 52.4 87 0.0019 31.2 9.0 67 97-163 155-243 (335)
425 PRK09468 ompR osmolarity respo 52.4 1.7E+02 0.0037 26.0 12.3 81 97-179 40-120 (239)
426 PF04131 NanE: Putative N-acet 52.0 89 0.0019 29.0 8.2 70 83-177 32-110 (192)
427 cd00945 Aldolase_Class_I Class 52.0 1.6E+02 0.0035 25.5 10.2 71 221-310 11-90 (201)
428 PRK08883 ribulose-phosphate 3- 51.7 2.1E+02 0.0045 26.8 13.3 67 85-155 59-127 (220)
429 PRK10710 DNA-binding transcrip 51.4 1.7E+02 0.0037 25.8 12.7 99 74-178 24-123 (240)
430 PRK11173 two-component respons 51.2 1.8E+02 0.0039 25.9 11.9 100 74-178 17-116 (237)
431 PRK05692 hydroxymethylglutaryl 51.2 1.2E+02 0.0026 29.4 9.6 95 84-180 72-194 (287)
432 cd04501 SGNH_hydrolase_like_4 51.1 33 0.00073 29.8 5.3 54 221-280 44-99 (183)
433 PRK10955 DNA-binding transcrip 50.8 1.7E+02 0.0037 25.6 12.1 99 74-179 15-114 (232)
434 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.8 1.4E+02 0.003 28.7 9.9 85 95-181 93-189 (275)
435 cd02071 MM_CoA_mut_B12_BD meth 50.5 1.4E+02 0.003 24.9 8.7 99 74-174 17-118 (122)
436 cd00950 DHDPS Dihydrodipicolin 50.3 67 0.0015 30.6 7.6 70 148-244 25-103 (284)
437 TIGR00007 phosphoribosylformim 50.2 1.1E+02 0.0025 28.0 8.9 65 97-164 149-218 (230)
438 PRK10403 transcriptional regul 50.2 1.6E+02 0.0035 25.1 13.0 104 74-180 20-124 (215)
439 PLN02925 4-hydroxy-3-methylbut 50.1 2.6E+02 0.0057 31.0 12.6 143 149-324 115-294 (733)
440 PF01729 QRPTase_C: Quinolinat 49.8 78 0.0017 28.5 7.5 71 89-163 83-154 (169)
441 PF03060 NMO: Nitronate monoox 49.8 1E+02 0.0022 30.4 9.0 103 74-179 126-241 (330)
442 PRK15411 rcsA colanic acid cap 49.5 2.1E+02 0.0044 26.1 11.2 102 74-180 14-121 (207)
443 TIGR02129 hisA_euk phosphoribo 49.5 77 0.0017 30.6 7.8 77 96-178 41-124 (253)
444 PRK02048 4-hydroxy-3-methylbut 49.5 1.8E+02 0.0039 31.6 11.1 143 149-324 46-225 (611)
445 PF13653 GDPD_2: Glycerophosph 49.3 17 0.00037 23.6 2.3 16 147-162 10-25 (30)
446 TIGR03849 arch_ComA phosphosul 49.3 96 0.0021 29.7 8.3 67 97-163 75-153 (237)
447 PRK10528 multifunctional acyl- 49.2 40 0.00088 30.1 5.6 54 221-280 56-111 (191)
448 PRK12555 chemotaxis-specific m 48.8 2.5E+02 0.0055 27.3 11.6 71 93-165 33-106 (337)
449 PLN02746 hydroxymethylglutaryl 48.0 1.7E+02 0.0036 29.5 10.2 82 79-164 53-141 (347)
450 cd00429 RPE Ribulose-5-phospha 47.8 1.4E+02 0.003 26.5 9.0 89 74-163 95-193 (211)
451 KOG1643 Triosephosphate isomer 47.8 72 0.0016 30.1 6.9 128 98-247 78-235 (247)
452 PRK08999 hypothetical protein; 47.7 76 0.0016 30.6 7.6 68 92-163 232-307 (312)
453 PRK05286 dihydroorotate dehydr 47.7 1.4E+02 0.003 29.7 9.6 69 97-165 158-246 (344)
454 COG1908 FrhD Coenzyme F420-red 47.5 20 0.00043 31.0 3.0 34 137-170 30-66 (132)
455 PF07075 DUF1343: Protein of u 47.5 33 0.00072 34.8 5.2 98 82-182 57-167 (365)
456 cd06819 PLPDE_III_LS_D-TA Type 47.5 2.8E+02 0.0062 27.1 16.9 96 73-180 21-120 (358)
457 PRK05718 keto-hydroxyglutarate 47.4 2.4E+02 0.0052 26.3 11.4 37 268-305 99-135 (212)
458 TIGR00640 acid_CoA_mut_C methy 47.4 1.8E+02 0.004 24.9 9.4 102 73-177 19-125 (132)
459 PLN02535 glycolate oxidase 47.2 89 0.0019 31.7 8.2 70 93-163 231-306 (364)
460 cd03332 LMO_FMN L-Lactate 2-mo 47.2 1.2E+02 0.0025 31.1 9.1 68 93-163 261-336 (383)
461 TIGR00683 nanA N-acetylneurami 46.9 73 0.0016 30.8 7.3 31 149-179 26-63 (290)
462 PF01168 Ala_racemase_N: Alani 46.8 2.2E+02 0.0047 25.6 14.2 184 74-306 11-211 (218)
463 PRK09581 pleD response regulat 46.4 2.2E+02 0.0048 27.9 10.9 102 74-178 16-118 (457)
464 cd01830 XynE_like SGNH_hydrola 46.0 56 0.0012 29.2 6.0 60 222-281 59-123 (204)
465 PRK06096 molybdenum transport 45.8 1.5E+02 0.0033 29.0 9.3 74 89-166 192-266 (284)
466 cd07938 DRE_TIM_HMGL 3-hydroxy 45.5 1E+02 0.0022 29.8 8.0 129 80-242 6-168 (274)
467 PF02679 ComA: (2R)-phospho-3- 45.5 71 0.0015 30.7 6.8 68 96-163 87-166 (244)
468 cd01822 Lysophospholipase_L1_l 45.5 58 0.0013 27.8 5.9 54 221-280 49-104 (177)
469 TIGR03151 enACPred_II putative 45.3 3.1E+02 0.0067 26.9 21.2 182 74-306 2-191 (307)
470 COG2352 Ppc Phosphoenolpyruvat 45.3 41 0.00088 37.7 5.7 97 160-279 488-598 (910)
471 PRK07084 fructose-bisphosphate 45.1 3.3E+02 0.0072 27.2 19.4 106 73-180 12-136 (321)
472 TIGR00126 deoC deoxyribose-pho 45.1 1.3E+02 0.0028 28.1 8.4 81 214-305 119-204 (211)
473 cd06808 PLPDE_III Type III Pyr 45.0 2.2E+02 0.0048 25.1 12.0 95 74-180 6-101 (211)
474 PRK09427 bifunctional indole-3 44.9 2.3E+02 0.0049 29.7 11.0 105 68-178 242-350 (454)
475 cd00952 CHBPH_aldolase Trans-o 44.8 1.3E+02 0.0028 29.4 8.8 67 97-163 33-109 (309)
476 PRK15447 putative protease; Pr 44.8 3.1E+02 0.0067 26.8 12.5 66 150-243 21-95 (301)
477 cd04742 NPD_FabD 2-Nitropropan 44.8 2.1E+02 0.0046 29.7 10.5 83 95-177 165-268 (418)
478 TIGR02875 spore_0_A sporulatio 44.5 2.6E+02 0.0055 25.7 13.3 84 94-178 36-120 (262)
479 cd04734 OYE_like_3_FMN Old yel 44.4 2.9E+02 0.0062 27.5 11.3 67 97-163 145-248 (343)
480 PRK10100 DNA-binding transcrip 44.2 2.6E+02 0.0057 25.8 10.6 101 72-180 22-125 (216)
481 PRK05437 isopentenyl pyrophosp 44.2 1.2E+02 0.0026 30.4 8.6 67 98-164 140-217 (352)
482 PRK12290 thiE thiamine-phospha 44.2 1.8E+02 0.0039 30.3 10.0 72 91-162 305-390 (437)
483 TIGR01859 fruc_bis_ald_ fructo 44.2 3.1E+02 0.0067 26.6 11.4 49 94-142 85-135 (282)
484 PRK13523 NADPH dehydrogenase N 44.2 2.8E+02 0.0061 27.6 11.2 67 97-163 146-246 (337)
485 cd03309 CmuC_like CmuC_like. P 43.8 1.4E+02 0.0031 29.5 9.0 81 225-306 158-242 (321)
486 COG0800 Eda 2-keto-3-deoxy-6-p 43.7 1.4E+02 0.0031 28.0 8.4 91 77-177 32-124 (211)
487 PF09370 TIM-br_sig_trns: TIM- 43.7 45 0.00097 32.5 5.2 228 74-324 5-267 (268)
488 PRK10076 pyruvate formate lyas 43.6 1.9E+02 0.004 26.9 9.2 67 95-180 79-155 (213)
489 PRK15108 biotin synthase; Prov 43.4 3.5E+02 0.0075 27.0 18.2 225 103-354 89-342 (345)
490 PRK14024 phosphoribosyl isomer 43.2 2.8E+02 0.0062 25.9 17.6 86 93-179 31-121 (241)
491 cd07941 DRE_TIM_LeuA3 Desulfob 43.2 3E+02 0.0066 26.3 11.3 190 80-305 6-227 (273)
492 PRK07114 keto-hydroxyglutarate 43.0 1.3E+02 0.0028 28.4 8.1 84 63-178 47-131 (222)
493 PRK07328 histidinol-phosphatas 43.0 1.1E+02 0.0024 29.0 7.8 90 229-324 147-249 (269)
494 PRK03512 thiamine-phosphate py 42.7 1.4E+02 0.0031 27.5 8.3 74 85-163 103-185 (211)
495 PF11072 DUF2859: Protein of u 42.0 47 0.001 29.3 4.6 42 211-254 89-130 (142)
496 PRK13762 tRNA-modifying enzyme 41.8 3.3E+02 0.0072 26.9 11.2 51 66-117 140-190 (322)
497 cd04736 MDH_FMN Mandelate dehy 41.3 2.2E+02 0.0047 28.9 9.9 69 93-163 244-317 (361)
498 cd00156 REC Signal receiver do 41.0 1.3E+02 0.0027 21.2 10.4 79 97-177 32-110 (113)
499 PRK14042 pyruvate carboxylase 41.0 29 0.00063 37.4 3.8 108 72-181 73-194 (596)
500 TIGR00683 nanA N-acetylneurami 40.8 1.7E+02 0.0037 28.2 8.9 77 98-174 26-117 (290)
No 1
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-62 Score=450.76 Aligned_cols=252 Identities=35% Similarity=0.565 Sum_probs=244.9
Q ss_pred CCchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHH
Q 018508 71 PSPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWA 150 (355)
Q Consensus 71 ~~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i 150 (355)
..+|+||++|++|++++|+|+.+++|..+|+++.+||||++||+||+|.+.+...++++++..++.+|+||++..++..|
T Consensus 3 ~~~n~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~I 82 (255)
T COG3836 3 APQNSFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMI 82 (255)
T ss_pred cccchHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHH
Q 018508 151 KKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAED 230 (355)
Q Consensus 151 ~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~niee 230 (355)
+++||.|++++++|||+|+||++++|+++||||.|.||+|....|+++||...+|++++|+++++++||||.+||+|+|+
T Consensus 83 kq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDa 162 (255)
T COG3836 83 KQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDA 162 (255)
T ss_pred HHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999778999999999999999999999999999
Q ss_pred HhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 231 IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 231 IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
|++++|||+||+||.||+++||+++++.||+|++++++++.+++++||. .|.++.+++.+++|+++|++|+.+|+|+++
T Consensus 163 IaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKa-agil~~~p~~a~~yl~lGa~fvavG~D~~l 241 (255)
T COG3836 163 IAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKA-AGILAADPADARRYLALGATFVAVGSDTGL 241 (255)
T ss_pred HHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCc-cccccCCHHHHHHHHHhCCeEEEEeccHHH
Confidence 9999999999999999999999999999999999999999999999975 567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 018508 311 FRSAAVEDVARFK 323 (355)
Q Consensus 311 l~~~~~~~~~~~r 323 (355)
+.+++++.++.||
T Consensus 242 ~~~a~~~l~~~fk 254 (255)
T COG3836 242 LRRAAEALLAAFK 254 (255)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999887
No 2
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=100.00 E-value=6.6e-61 Score=457.01 Aligned_cols=253 Identities=33% Similarity=0.547 Sum_probs=243.0
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHH
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAK 151 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~ 151 (355)
.+|+||++|++||+++|+|+.+++|..+|+++.+||||||||+||++++.+++.+++++++..|..++|||+..+++.|+
T Consensus 5 ~~n~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 5 LSNPFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_pred cchHHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHH
Q 018508 152 KALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDI 231 (355)
Q Consensus 152 ~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeI 231 (355)
++||+|++|||+|||+|+||++++++++||||.|.||++++..|+.+||...+|++++|+++.+++||||++|++|++||
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I 164 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEI 164 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHH
Confidence 99999999999999999999999999999999999999865568899997779999999999999999999999999999
Q ss_pred hccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHHH
Q 018508 232 AAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 232 aavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
+++||||+++|||+||+++||++++++||++++++++++++|+++||. .|.+..+++.+++++++||+++++++|+.+|
T Consensus 165 ~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~-~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 165 LDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKA-AGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred hCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCe-EEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 999999999999999999999999999999999999999999999975 5777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 018508 312 RSAAVEDVARFKMN 325 (355)
Q Consensus 312 ~~~~~~~~~~~r~~ 325 (355)
.+++++.++.+|..
T Consensus 244 ~~~~~~~~~~~~~~ 257 (267)
T PRK10128 244 TDALDQRLAMFKSG 257 (267)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999973
No 3
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=100.00 E-value=9.6e-60 Score=445.43 Aligned_cols=249 Identities=32% Similarity=0.532 Sum_probs=239.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
|+||++|++||+++|+|+.+++|..+|+++.+||||||||+||++.+.+++.+++++++..|..++|||+..++..|+++
T Consensus 1 ~~lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 1 NRFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred ChHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA 233 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa 233 (355)
||+|++|||+|||+|+||++++++++||||.|.||+++ ..|+.+||...+|++..|+++.+++||||++|++|++||++
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~-~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a 159 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSV-SHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAA 159 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCc-chhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhC
Confidence 99999999999999999999999999999999999985 35888999777999999999999999999999999999999
Q ss_pred cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHHHHH
Q 018508 234 VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRS 313 (355)
Q Consensus 234 vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~ 313 (355)
+||||+|+||++||+++||.+++++||++++++++++.+|+++|+. +|.++.+++.++.++++||+++++++|+.+|.+
T Consensus 160 v~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~-~g~~~~~~~~~~~~~~~G~~~~~~~~D~~~l~~ 238 (249)
T TIGR03239 160 VDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKP-CGILAPVEADARRYLEWGATFVAVGSDLGVFRS 238 (249)
T ss_pred CCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCC-EEEcCCCHHHHHHHHHcCCCEEEEhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 577788889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018508 314 AAVEDVARFKM 324 (355)
Q Consensus 314 ~~~~~~~~~r~ 324 (355)
++++.++.+|.
T Consensus 239 ~~~~~~~~~~~ 249 (249)
T TIGR03239 239 ATQALRDKFKK 249 (249)
T ss_pred HHHHHHHHhhC
Confidence 99999998873
No 4
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=100.00 E-value=1.3e-59 Score=446.08 Aligned_cols=252 Identities=30% Similarity=0.506 Sum_probs=241.2
Q ss_pred CCchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHH
Q 018508 71 PSPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWA 150 (355)
Q Consensus 71 ~~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i 150 (355)
+.+|+||++|++||+++|+|+.+++|..+|+++.+||||||||+||++.+.+++.+++++++..|..++|||+..++..|
T Consensus 5 ~~~n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 5 VFPNKFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVII 84 (256)
T ss_pred ccCHHHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHH
Q 018508 151 KKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAED 230 (355)
Q Consensus 151 ~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~niee 230 (355)
+++||+|++|||+|||+|+||++++++++||||.|.||+++ ..|+.+||..++|++++|+++.+++||||++|++|++|
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~-~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~e 163 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSV-SHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDA 163 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCc-cccccccCChHHHHHHhccccEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999985 35888999878999999999999999999999999999
Q ss_pred HhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 231 IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 231 IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
|+++||||+|+||++||+.+||++++++||++++++.+++.+|+++|+. +|.++.+++.++.++++||+++++++|+.+
T Consensus 164 I~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~-~g~~~~~~~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 164 IAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKP-SGILAPVEADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred HhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCc-eEEcCCCHHHHHHHHHcCCCEEEEchHHHH
Confidence 9999999999999999999999999999999999999999999999976 566777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 018508 311 FRSAAVEDVARFKM 324 (355)
Q Consensus 311 l~~~~~~~~~~~r~ 324 (355)
|.+++++.++.+|.
T Consensus 243 l~~~~~~~~~~~~~ 256 (256)
T PRK10558 243 FRSATQALADTFKK 256 (256)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998873
No 5
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=100.00 E-value=5e-57 Score=426.90 Aligned_cols=249 Identities=35% Similarity=0.522 Sum_probs=236.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
|+||++|++||+++|+|+.+++|..+|+++.+|||||+||+||++.+.+++..++++++..|..++||||..+++.++++
T Consensus 1 ~~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 1 NQFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred ChHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA 233 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa 233 (355)
||+|++|||+|||+|+||+++++++++|||.|.||+++...|+.+||...+|+++.|+++.+++||||++|++|+++|++
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a 160 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAA 160 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999975446888999778999999999999999999999999999999
Q ss_pred cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHHHHH
Q 018508 234 VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRS 313 (355)
Q Consensus 234 vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~ 313 (355)
+||||+++||++||+++||++++++||++.+++.++.++|+.+|+. .|..+.+++.++.++++||+++++++|+.+|++
T Consensus 161 ~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~-~Gi~~~~~~~~~~~~~~G~~~~~~~~D~~~l~~ 239 (249)
T TIGR02311 161 VEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKA-AGILTADPKLARQYLKLGALFVAVGVDTTLLAR 239 (249)
T ss_pred CCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCc-eeecCCCHHHHHHHHHcCCCEEEEchHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 566778889999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 018508 314 AAVEDVARFK 323 (355)
Q Consensus 314 ~~~~~~~~~r 323 (355)
++++.++.++
T Consensus 240 ~~~~~~~~~~ 249 (249)
T TIGR02311 240 GAEALAARFK 249 (249)
T ss_pred HHHHHHHhcC
Confidence 9999887764
No 6
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=100.00 E-value=1.8e-41 Score=314.12 Aligned_cols=204 Identities=33% Similarity=0.513 Sum_probs=181.9
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC--CCHHHHHHHHHH----H---HhCCCCeEEcCCCCCHHHHHH---HH
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP--GGISDALACLHA----L---AATGTPAILRLPESCPTWAKK---AL 154 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~--~~~~~a~~~i~a----~---~~~g~~~iVRV~~~~~~~i~~---aL 154 (355)
.++|+|.++|..++++..+|+|+|+|||||++ .+|+.+|..+.. + +..+..++||||+.++..+++ ++
T Consensus 2 s~l~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l 81 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEAL 81 (221)
T ss_dssp EEEEEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhc
Confidence 58999999999999999999999999999995 678877765443 2 234578999999999988888 99
Q ss_pred hcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhcc
Q 018508 155 DLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAV 234 (355)
Q Consensus 155 daGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaav 234 (355)
+.|++|||+|||+|++|+++++++++|+|.|.|+. |+++.+++||||++||+|+++||++
T Consensus 82 ~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~IET~~gv~~~~eI~a~ 141 (221)
T PF03328_consen 82 DAGADGIVLPKVESAEDARQAVAALRYPPAGRRGA--------------------NGSTKIIPMIETPEGVENLEEIAAV 141 (221)
T ss_dssp HTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTH--------------------HCHSEEEEEE-SHHHHHTHHHHHTS
T ss_pred ccCCCeeeccccCcHHHHHHHHHHHhhcccccccc--------------------cCceEEEEeeccHHHHhCHHhhccc
Confidence 99999999999999999999999999999887762 5689999999999999999999999
Q ss_pred CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 235 DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 235 pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
||||+++||++||+.+||++++++||++.+++.+++.+|+++|+.++++++.+.++...+.+.|++++.+|.|..+
T Consensus 142 ~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~~~~~~~d~~~~~~~~~~~~~~G~dg~~ 217 (221)
T PF03328_consen 142 PGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDGVFPDFEDAEGLEAEGFRARALGFDGKL 217 (221)
T ss_dssp TTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEEEESSSSHHHHHHHHHHHCCEEEEHHCC
T ss_pred CCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEEeeCCHHHHHHHHHHHHHHHHHcccccc
Confidence 9999999999999999999999999999999999999999999988999999999999999999999999998754
No 7
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=100.00 E-value=5.7e-35 Score=281.75 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=188.3
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCCCC--CHHHHHHHHHHH----HhCCCCeEEcCCCCCH----HHHHHHHhcC
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHGPG--GISDALACLHAL----AATGTPAILRLPESCP----TWAKKALDLG 157 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~--~~~~a~~~i~a~----~~~g~~~iVRV~~~~~----~~i~~aLdaG 157 (355)
-||+|+++|+.++++..+|+|+|+|||||+.. +|+++|+.+..+ ...+..++||||+.++ ..+.++++.|
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g 85 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAG 85 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcC
Confidence 49999999999999999999999999999966 899988876543 2345789999999987 5689999999
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHh-ccCC
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIA-AVDG 236 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIa-avpg 236 (355)
++|||+|||+|++|++.++++++..+ +|....++++.+++||||++|+.|+++|+ ++|+
T Consensus 86 ~~givlPKv~s~~~v~~~~~~l~~~~--------------------~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~r 145 (288)
T TIGR01588 86 VDVVRLPKTDTAEDIHELEKLIERIE--------------------KEIGREVGSTKLMAAIESALGVVNAVEIARASKR 145 (288)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHHH--------------------HhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCc
Confidence 99999999999999999999886311 23344577899999999999999999999 6799
Q ss_pred ccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCc-------hhHHHHHHCCCCE--EEecch
Q 018508 237 VDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPH-------DAPLEMKSRGYHM--VSGAVD 307 (355)
Q Consensus 237 VD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~-------~~a~~~~~~G~~~--vs~~~D 307 (355)
|++|+||++||+.+||..++++++++.+++.+++.+|+++|+.++++++.+. +.++..+.+||++ +.+.+.
T Consensus 146 v~~l~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~IHP~Q 225 (288)
T TIGR01588 146 LMGIALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDTVYSDVNNEEGFLAEAQLIKQLGFDGKSLINPRQ 225 (288)
T ss_pred ceEEEeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccCCccCcCCHHHHHHHHHHHHHcCCCceeccCHHH
Confidence 9999999999999999999899999999999999999999999888887763 4567788999985 677788
Q ss_pred HHHHHHHHH---HHHHHHHHhc
Q 018508 308 VGLFRSAAV---EDVARFKMNL 326 (355)
Q Consensus 308 ~~ll~~~~~---~~~~~~r~~~ 326 (355)
+.++++.++ +.++..|..+
T Consensus 226 i~~in~~f~Ps~~ei~~A~~i~ 247 (288)
T TIGR01588 226 IELVHKVYAPTEKEIDKAIEVI 247 (288)
T ss_pred HHHHHHhcCcCHHHHHHHHHHH
Confidence 888888884 6666666654
No 8
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.95 E-value=5.2e-27 Score=244.73 Aligned_cols=210 Identities=17% Similarity=0.138 Sum_probs=176.2
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCC--------cEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCC--------
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGY--------DFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESC-------- 146 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~--------D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~-------- 146 (355)
...+.+|+|+.+|..++.+...|+ +|++++.++.|...++...+-..+. ..+.+++||.-+..
T Consensus 265 g~~i~v~aNi~~~~d~~~~~~~ga~GiGL~RtEfl~l~~~~~P~e~eq~~~y~~i~~~~~~~pv~iRtlDig~DK~~~~~ 344 (565)
T TIGR01417 265 GHQVELAANIGTVDDVEGAERNGGEGIGLFRTEFLYMSRDQLPTEEEQFAAYKTVLEAMESDAVIVRTLDIGGDKELPYL 344 (565)
T ss_pred CceEEEEecCCCHHHHHHHHhCCCCEEEeeechHhhhCCCCCCCHHHHHHHHHHHHHHhCCCceEEECCCCCCccccccc
Confidence 467899999999999999999998 5667787777777666655444333 46788999986531
Q ss_pred -------H--------------H-------HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCccccccccc
Q 018508 147 -------P--------------T-------WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASG 198 (355)
Q Consensus 147 -------~--------------~-------~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~ 198 (355)
| . .|.++++.|+.+||+|||+|++|+++++++++|++.+.|.
T Consensus 345 ~~~~E~NP~LG~RgiR~~l~~~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~---------- 414 (565)
T TIGR01417 345 NFPKEENPFLGYRAIRLALEREEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELND---------- 414 (565)
T ss_pred CCCCCCCccccchhhhhcccCHHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHH----------
Confidence 1 1 2567889999999999999999999999999997654432
Q ss_pred CCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhh----------cCCCCCCCCHHHHHHHHH
Q 018508 199 YGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSAS----------MGYLWDPGHRKVREMMRV 268 (355)
Q Consensus 199 ~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~s----------lG~~~~~~~p~v~~ai~~ 268 (355)
|....|+++.+++|||||+|+.++++|++ +||+|+||+|||+++ +|.++++.||+|..++++
T Consensus 415 ------~~~~~~~~~~vg~mIEtpaav~~~d~ia~--~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~ 486 (565)
T TIGR01417 415 ------EGKAFDENIEVGVMIEIPSAALIADHLAK--EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKL 486 (565)
T ss_pred ------hccccccCcEEEEEEcCHHHHHhHHHHHh--hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHH
Confidence 23345778999999999999999999998 899999999999996 888899999999999999
Q ss_pred HHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHHHH
Q 018508 269 AEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 269 iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
++++|+++|+++ ||.++++++.++.++++||+++++++....-
T Consensus 487 vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i~~ 531 (565)
T TIGR01417 487 VIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILR 531 (565)
T ss_pred HHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhHHH
Confidence 999999999873 6778899999999999999999999888653
No 9
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.94 E-value=2e-26 Score=240.40 Aligned_cols=208 Identities=20% Similarity=0.163 Sum_probs=178.0
Q ss_pred cEEEEEEecCCHHHHHHhhhcCC--------cEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCC---------
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGY--------DFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESC--------- 146 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~--------D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~--------- 146 (355)
..+.+++|+.++..++.+...|+ +|++++.+..|...++...+-+.++ ..+.+++||.-+..
T Consensus 267 ~~i~l~aNi~~~~~~~~a~~~ga~GvGL~RtEfl~l~~~~~P~eeeq~~~y~~i~~~~~~~~v~iRtlDiGgDK~~~~~~ 346 (575)
T PRK11177 267 HQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFQAYKAVAEAMGSQAVIVRTMDIGGDKELPYMN 346 (575)
T ss_pred CEEEEEEcCCCHHHHHHHHhCCCceehHhhchHhhhCCCCCCCHHHHHHHHHHHHHHcCCCeEEEECcCCCcccccccCC
Confidence 45789999999999999999997 6789988888888787766655554 46788999975531
Q ss_pred ------H------------------H---HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccC
Q 018508 147 ------P------------------T---WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGY 199 (355)
Q Consensus 147 ------~------------------~---~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~ 199 (355)
| . .|.++++.|..+||+|||+|++|++++++.++|+|.|.|.+
T Consensus 347 ~~~E~NP~LG~RgiR~~l~~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~---------- 416 (575)
T PRK11177 347 LPKEENPFLGWRAIRIAMDRKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDE---------- 416 (575)
T ss_pred CCCCCCcccccchhhhcCCCHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHh----------
Confidence 1 1 14667888999999999999999999999999998775432
Q ss_pred CCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc----------CCCCCCCCHHHHHHHHHH
Q 018508 200 GIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM----------GYLWDPGHRKVREMMRVA 269 (355)
Q Consensus 200 g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl----------G~~~~~~~p~v~~ai~~i 269 (355)
....++++.+++|||||+|+.++++|++ +||+++||||||++++ +..+++.||+|+.+++++
T Consensus 417 ------~~~~~~~~~~g~mIE~p~a~~~~d~i~~--~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v 488 (575)
T PRK11177 417 ------GKAFDESIEIGVMVETPAAAVIARHLAK--EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQV 488 (575)
T ss_pred ------ccccCCCcEEEEEEeCHHHHHhHHHHHh--hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHH
Confidence 2335778999999999999999999996 8999999999999976 567899999999999999
Q ss_pred HHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 270 EKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 270 v~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
+++|+++|++ .||.++++|..+..++.+|++.+||++....
T Consensus 489 ~~~a~~~g~~v~vCGe~A~dp~~~~lLlglGi~~lSm~p~~i~ 531 (575)
T PRK11177 489 IDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIP 531 (575)
T ss_pred HHHHHhcCCeEEEeCCCCCCHHHHHHHHHCCCCeEEECHHHHH
Confidence 9999999987 5999999999999999999999999998864
No 10
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.8e-25 Score=212.84 Aligned_cols=215 Identities=20% Similarity=0.239 Sum_probs=176.7
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CCCHHHHHHHHHHHH-h--CCCCeEEcCCCCCHH----HHHHHHhcCC
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PGGISDALACLHALA-A--TGTPAILRLPESCPT----WAKKALDLGP 158 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~~~~~a~~~i~a~~-~--~g~~~iVRV~~~~~~----~i~~aLdaGa 158 (355)
.+|+|..++..++++..+|+|.|||||||+ +.+|+.+|..+..+. . ....++||||+.++. .+..++..|+
T Consensus 2 ~LfvPa~~~~~i~ka~~~~aD~vi~DLEDaVa~~~K~~Ar~~l~~~l~~~~~~~~~~VRIN~l~t~~g~~Dl~av~~~~~ 81 (283)
T COG2301 2 MLFVPATNADAIAKAAISGADSVILDLEDAVAPADKDAARDNLRRALLDLPFTGEVVVRINGLDTPWGADDLAAVVRSAV 81 (283)
T ss_pred ccccCCCCHHHHHhhhhcCCCEEEEeccccCCccchHHHHHHHHHHhcccCccCceEEEecCCCChhhHHHHHHHHhcCC
Confidence 379999999999999999999999999999 468999999776542 1 122789999999874 3567788899
Q ss_pred CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCc-
Q 018508 159 QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGV- 237 (355)
Q Consensus 159 ~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgV- 237 (355)
+|||+||++++.++..+...+...+. - .+...++++|||+.|+.|+.+|++.++.
T Consensus 82 d~v~LPK~e~~~~v~~~~~~l~~~~~---~---------------------~~~~~l~a~iETa~gv~~~~eIA~a~~~l 137 (283)
T COG2301 82 DGVVLPKVESAADVEELDQLLREAEA---A---------------------AGREILIALIETARGVLNAEEIAAASGRL 137 (283)
T ss_pred CEEEccCcCchHHHHHHHHHhhhhhc---c---------------------ccchhhHHhhhcHHHHhCHHHHhcCccce
Confidence 99999999999999999888764320 0 0101489999999999999999987765
Q ss_pred cEEEEChhhHHhhcCCCCCCCCH-HHHHHHHHHHHHHHhCCCceeecccCCc-------hhHHHHHHCCCCE--EEecch
Q 018508 238 DCVQMGPLDLSASMGYLWDPGHR-KVREMMRVAEKGVLGGGKAYLAGFAMPH-------DAPLEMKSRGYHM--VSGAVD 307 (355)
Q Consensus 238 D~l~iGp~DLs~slG~~~~~~~p-~v~~ai~~iv~aa~a~g~~~~g~~~~d~-------~~a~~~~~~G~~~--vs~~~D 307 (355)
.++.||.+||+.++|....++.. .+.+++.+++.+|+.+|+...++++.+. .++++.+++||++ +.+..+
T Consensus 138 ~~l~~Ga~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~V~~d~~d~~g~~~e~~~a~~~Gf~GK~~IHP~Q 217 (283)
T COG2301 138 VGLAFGANDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDGVYTDINDPEGFAREAAQAAALGFDGKTCIHPSQ 217 (283)
T ss_pred eeeEecHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccccccccCCHHHHHHHHHHHHHcCCCcccccChhH
Confidence 99999999999999998777666 8999999999999999999888888764 4567788999986 677788
Q ss_pred HHHHHHHH---HHHHHHHHHhc
Q 018508 308 VGLFRSAA---VEDVARFKMNL 326 (355)
Q Consensus 308 ~~ll~~~~---~~~~~~~r~~~ 326 (355)
+-++.+++ .+.++..|..+
T Consensus 218 I~~vn~af~Ps~~ev~~Ar~Il 239 (283)
T COG2301 218 IEVVNRAFSPSEEEVAWARRVL 239 (283)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH
Confidence 88888887 45566666543
No 11
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.91 E-value=1.7e-23 Score=225.57 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=160.7
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCc--------EEEEeC-----------CCCCCC---------------HHHH----H
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYD--------FVVVDM-----------EHGPGG---------------ISDA----L 125 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D--------~vilDl-----------Eh~~~~---------------~~~a----~ 125 (355)
...+.+++|+.+|..++.+...|+| |++++. +..|.+ +++. .
T Consensus 478 g~~~~l~aNi~~~~~~~~a~~~ga~GiGL~RtE~l~~~~~~~~~~~~~~~~~~p~e~~~~l~~~~~~~~~~~~~~~~~~~ 557 (795)
T PRK06464 478 ETPTKIMMNVGNPERAFDFAALPNDGVGLARLEFIINNMIGVHPLALLEFDQQDADLKAEIEELTAGYASPEEFYVDKLA 557 (795)
T ss_pred CcceEEEEcCCCHHHHHHHHhcCCCeEeehhhhHHHhhhcccchhhhhcccCCcHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3568999999999999999999985 455562 222322 1111 1
Q ss_pred HHH-HHHH-hCCCCeEEcCCCC---------------------------------CH--H-------HHHHHHh-cCCCe
Q 018508 126 ACL-HALA-ATGTPAILRLPES---------------------------------CP--T-------WAKKALD-LGPQG 160 (355)
Q Consensus 126 ~~i-~a~~-~~g~~~iVRV~~~---------------------------------~~--~-------~i~~aLd-aGa~G 160 (355)
+.+ +.+. ..+.++.||.-+. .+ . .|+++++ .|+.+
T Consensus 558 ~~~~~~~~~~~~~pv~iRtlD~~~~~~~~l~Ggdk~~~~E~NP~LG~RGiR~~l~~p~~~lf~~qlraI~rald~~G~~~ 637 (795)
T PRK06464 558 EGIATVAAAFYPKPVIVRLSDFKSNEYANLIGGERYEPEEENPMLGFRGASRYLSESFREAFALECEAIKRVREEMGLTN 637 (795)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCchhhhHHhccCCcCCCCCCCCccccchhhhcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 111 2222 4678899998772 11 1 2577888 79988
Q ss_pred --EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCcc
Q 018508 161 --VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVD 238 (355)
Q Consensus 161 --ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD 238 (355)
||+|||+|++|+++++++++|. |+. ..|+++.+++|||||+|+.++|+|+++ ||
T Consensus 638 ~~ImvPmV~s~eEa~~~~~~~~~~-----g~~-----------------~~~~~~~vg~MIEtp~av~~~deIa~~--vD 693 (795)
T PRK06464 638 VEVMIPFVRTVEEAEKVIELLAEN-----GLK-----------------RGENGLKVIMMCEIPSNALLAEEFLEY--FD 693 (795)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHh-----Ccc-----------------ccccCcEEEEEEcCHHHHHHHHHHHHh--CC
Confidence 9999999999999999999862 221 235678999999999999999999997 99
Q ss_pred EEEEChhhHHhh-cCC---------CCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCC-chhHHHHHHCCCCEEEec
Q 018508 239 CVQMGPLDLSAS-MGY---------LWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMP-HDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 239 ~l~iGp~DLs~s-lG~---------~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d-~~~a~~~~~~G~~~vs~~ 305 (355)
+++||||||+++ ||+ .+++.||+|++++++++++|+++|+++ ||.++.+ ++.++.++++|+++++++
T Consensus 694 fi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~~G~~~ls~~ 773 (795)
T PRK06464 694 GFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVEEGIDSISLN 773 (795)
T ss_pred EEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHCCCCEEEEc
Confidence 999999999995 664 678899999999999999999999863 3333457 899999999999999999
Q ss_pred chHHHHHHHH
Q 018508 306 VDVGLFRSAA 315 (355)
Q Consensus 306 ~D~~ll~~~~ 315 (355)
+|..+-.+.+
T Consensus 774 ~d~~~~~k~~ 783 (795)
T PRK06464 774 PDAVVDTWLA 783 (795)
T ss_pred chhHHHHHHH
Confidence 9998754443
No 12
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.91 E-value=4e-23 Score=222.72 Aligned_cols=206 Identities=19% Similarity=0.196 Sum_probs=159.1
Q ss_pred cEEEEEEecCCHHHHHHhhhcCC--------cEEEEeC-C-------CCCCCHHHH-----------------HHHH-HH
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGY--------DFVVVDM-E-------HGPGGISDA-----------------LACL-HA 130 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~--------D~vilDl-E-------h~~~~~~~a-----------------~~~i-~a 130 (355)
..+.+++|+..|..++.+...|+ +|+++|. + +.|...++. .+.. +.
T Consensus 477 ~~~~l~~Ni~~~~~~~~~~~~ga~GiGL~RtE~l~~~~~~~~p~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~y~~i 556 (782)
T TIGR01418 477 TATKIYMNVGNPEVAFRFAALPNDGVGLARIEFIILNWIGKHPLALIDDDDLESVEKEELTAGGPRDFFVDKLAEGIAKV 556 (782)
T ss_pred ceEEEEecCCCHHHHHHHHhCCCceEEEccchhhhhcccccChhhhhhCCCHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 57899999999999999999998 4567774 4 223221111 1112 22
Q ss_pred HH-hCCCCeEEcCCCC-------------------C----------------HH-------HHHHHH-hcCCCe--Eeec
Q 018508 131 LA-ATGTPAILRLPES-------------------C----------------PT-------WAKKAL-DLGPQG--VMFP 164 (355)
Q Consensus 131 ~~-~~g~~~iVRV~~~-------------------~----------------~~-------~i~~aL-daGa~G--ImvP 164 (355)
+. ..+.+++||.-+. + +. .|++++ |.|+.+ ||+|
T Consensus 557 ~~~~~~~pV~iRtlD~~~dk~~~~~ggdk~~~~E~NP~LG~RGir~~l~~~~~~lf~~qlraI~ral~d~G~~~~~Im~P 636 (782)
T TIGR01418 557 AAAFYPKPVIVRTSDFKSNEYRNLIGGEEYEPDEENPMLGWRGASRYYSESYEEAFRLECRAIKRVREEMGLTNVEVMIP 636 (782)
T ss_pred HHHcCCCeEEEEcCCCCccchhhhhCCCccCCCCCCcccccchhhhhcccccHHHHHHHHHHHHHHHHhcCCCCeEEEec
Confidence 22 3678899998772 0 11 146777 889999 9999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEECh
Q 018508 165 MIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 165 ~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp 244 (355)
||+|++|++++++++++. | + ...|+++.+++|||||+|+.|+++|+++ ||+|+|||
T Consensus 637 mV~s~eE~~~~~~~~~~~--g---~-----------------~~~~~~~~vg~mIEtp~av~~~d~Ia~~--vDfisIGt 692 (782)
T TIGR01418 637 FVRTPEEGKRALEIMAEE--G---L-----------------RRGKNGLEVYVMCEVPSNALLADEFAKE--FDGFSIGS 692 (782)
T ss_pred CCCCHHHHHHHHHHHHHh--C---c-----------------cccccCcEEEEEECcHHHHHHHHHHHHh--CCEEEECc
Confidence 999999999999999752 1 1 1235568999999999999999999997 99999999
Q ss_pred hhHHhh-cCC---------CCCCCCHHHHHHHHHHHHHHHhCCCce--eecccC-CchhHHHHHHCCCCEEEecchHHHH
Q 018508 245 LDLSAS-MGY---------LWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAM-PHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 245 ~DLs~s-lG~---------~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~-d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
|||+++ ||+ .+++.||+|++++++++++|+++|+++ ||..++ +++.++.++++|++++++++|...-
T Consensus 693 nDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d~~~~ 772 (782)
T TIGR01418 693 NDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFLVEEGIDSISLNPDAVLR 772 (782)
T ss_pred hHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcchHHH
Confidence 999994 554 678899999999999999999999863 322233 6888999999999999999999765
Q ss_pred HHH
Q 018508 312 RSA 314 (355)
Q Consensus 312 ~~~ 314 (355)
.+.
T Consensus 773 ~k~ 775 (782)
T TIGR01418 773 TRL 775 (782)
T ss_pred HHH
Confidence 443
No 13
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3e-21 Score=197.95 Aligned_cols=212 Identities=22% Similarity=0.203 Sum_probs=169.9
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCC--------cEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCC---------
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGY--------DFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPES--------- 145 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~--------D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~--------- 145 (355)
...+-+..|+.+|.-++-+...|+ +|+++|..+.|.+.++...+-..++ ..|.+++||.-+.
T Consensus 267 G~~vev~ANIg~~~d~~~a~~~GaegVGLfRTEFLfm~r~~~P~EeEQ~~aY~~vlea~~g~pviiRTlDiGGDK~lpyl 346 (574)
T COG1080 267 GHRVEVAANIGTPKDAEGAFANGAEGVGLFRTEFLFMDRDALPDEEEQFEAYKAVLEAMGGKPVIIRTLDIGGDKPLPYL 346 (574)
T ss_pred CceEEEEecCCCHHHHHHHHhcCCceeehhHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCCceEEEecccCCCCcCCCC
Confidence 356778899999999999999997 7889999999999898887766655 4678999997553
Q ss_pred ------CH------------------HHHHHHHhc---CCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCccccccccc
Q 018508 146 ------CP------------------TWAKKALDL---GPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASG 198 (355)
Q Consensus 146 ------~~------------------~~i~~aLda---Ga~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~ 198 (355)
+| .+++.+|++ |--.||+|||.+.+|++++.+.+...-.-.|-.|.
T Consensus 347 ~lp~E~NPfLG~RaIRl~l~~~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~------- 419 (574)
T COG1080 347 NLPKEENPFLGYRAIRLSLERPEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGL------- 419 (574)
T ss_pred CCccccCchhhhHHHHHhhccHHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 11 124555655 44569999999999999888766411001111111
Q ss_pred CCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc----------CCCCCCCCHHHHHHHHH
Q 018508 199 YGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM----------GYLWDPGHRKVREMMRV 268 (355)
Q Consensus 199 ~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl----------G~~~~~~~p~v~~ai~~ 268 (355)
..++++.+++|||+|.+...++.+|. .||+++||+|||+|+. .+.+++.||.|+.++++
T Consensus 420 ---------~~~~~i~lGiMIEvPsAa~~a~~lak--evDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~ 488 (574)
T COG1080 420 ---------AFDEKIELGIMIEVPSAALIADQLAK--EVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQ 488 (574)
T ss_pred ---------ccccccceeEEEehhHHHHHHHHHHH--hCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHH
Confidence 12558999999999999999999997 7999999999999963 44578999999999999
Q ss_pred HHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHHHHHH
Q 018508 269 AEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRS 313 (355)
Q Consensus 269 iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~ 313 (355)
++++++++|++ .||.+++|+..+..++.+|.+.+|+++-...-.+
T Consensus 489 vi~~ah~~gkwvgmCGElAgD~~a~plLlGlGldElSms~~si~~vK 535 (574)
T COG1080 489 VIDAAHRHGKWVGMCGELAGDPAATPLLLGLGLDELSMSAPSIPAVK 535 (574)
T ss_pred HHHHHHHcCCeeeechhhccChhhHHHHHhcCcchhccCchhHHHHH
Confidence 99999999987 5999999999999999999999999987765433
No 14
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.83 E-value=9.4e-20 Score=195.87 Aligned_cols=208 Identities=16% Similarity=0.104 Sum_probs=162.5
Q ss_pred EEEEEEecCCHHHHHHhhhcCC--------cEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCC-----------
Q 018508 86 LYGLFLLSFSPTLAEISGLAGY--------DFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPES----------- 145 (355)
Q Consensus 86 ~~gl~v~~~sp~~~e~aa~~G~--------D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~----------- 145 (355)
.+.+++|++.|..++.+...|+ +|++++.++.|.+.++...+-+.++ ..|.+++||.-+.
T Consensus 434 ~i~l~~Ni~~~~d~~~~~~~ga~GvGL~RtEfl~~~~~~~P~e~eQ~~~y~~~~~~~~~~pv~iRtlDiGgDK~~~~~~~ 513 (748)
T PRK11061 434 RIKVMLNAGLSAEHEEKLGSRVDGVGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFPDKPVTLRTLDIGADKQLPYMPI 513 (748)
T ss_pred eeeEEEecCCHHHHHHHHhCCCCeEecccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCeEEEECCCCCcCCCCCCCCC
Confidence 6899999999999999999887 6779888888888777766555444 4688899997553
Q ss_pred ---CH------------------HHHHHHHhcCC----CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC
Q 018508 146 ---CP------------------TWAKKALDLGP----QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG 200 (355)
Q Consensus 146 ---~~------------------~~i~~aLdaGa----~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g 200 (355)
+| .+++++|.+++ -.||+|||.+.+|++++.+.+...-...+. .+|
T Consensus 514 ~E~NP~lG~RgiR~~l~~~~~f~~QlrAilra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~---------~~~ 584 (748)
T PRK11061 514 SEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEE---------MLG 584 (748)
T ss_pred CCCCcccccchhhccccCHHHHHHHHHHHHHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHH---------hcC
Confidence 11 23566666654 369999999999987666554421011110 000
Q ss_pred CCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc----------CCCCCCCCHHHHHHHHHHH
Q 018508 201 IDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM----------GYLWDPGHRKVREMMRVAE 270 (355)
Q Consensus 201 ~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl----------G~~~~~~~p~v~~ai~~iv 270 (355)
. .. .++.+++|||||.++..+++++. ++|+++||+|||+|.+ ...+++.||.|+.++++++
T Consensus 585 ~------~~-~~~~~G~MiE~Paa~~~~~~~a~--~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~ 655 (748)
T PRK11061 585 Y------EI-PKPRIGIMIEVPSMVFMLPHLAS--RVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIA 655 (748)
T ss_pred C------CC-CCceEEEEEehHHHHHHHHHHHH--hCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHH
Confidence 0 01 24789999999999999999987 6999999999999974 3346789999999999999
Q ss_pred HHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHHHH
Q 018508 271 KGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 271 ~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
++|+++|++ +||.++++|..+..++.+|++.+||++....-
T Consensus 656 ~~a~~~g~~v~vCGe~a~dp~~~~~L~glGi~~lS~~~~~i~~ 698 (748)
T PRK11061 656 DEAEQHGLPVSLCGEMAGDPMGALLLIGLGYRHLSMNGRSVAR 698 (748)
T ss_pred HHHhhCcCEEEEcCCcccCHHHHHHHHHCCCcEEccChHHHHH
Confidence 999999987 59999999999999999999999999988653
No 15
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=99.82 E-value=2.8e-20 Score=179.99 Aligned_cols=210 Identities=22% Similarity=0.224 Sum_probs=147.4
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCc--------EEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCC--------
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYD--------FVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESC-------- 146 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D--------~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~-------- 146 (355)
...+.+++|+++++.++.+...|+| |++++..+.|...++...+-..++ ..+.+++||.-+..
T Consensus 17 g~~i~l~aNi~~~~d~~~~~~~gadGIGL~RtEfl~l~~~~~p~e~eq~~~y~~i~~~~~~~pV~iRtlD~g~dK~l~~~ 96 (293)
T PF02896_consen 17 GTRIKLMANIGSPEDAEKALELGADGIGLFRTEFLFLNRGRPPSEEEQYEIYRKIAEAMGGKPVTIRTLDIGGDKPLPYL 96 (293)
T ss_dssp S-BSEEEEEESSGHHHHHHHHTT-SSEEEEECHHHHSSSSSHHHHHHHHHHHHHHHHHTTTSEEEEE---SBCCCGSCSS
T ss_pred CCEEEEEEeCCCHHHHHHHHhcCCccccchhhhhhhhcCCCCchHHHHHHHHHHHHHHhccCcEEEEecCCCCCccCCcc
Confidence 4477899999999999999999985 455555554444444443333333 46788999975531
Q ss_pred --------H------------------HHHHHHHh---cCCCeEeecCCCCHHHHHHHHHHcCCCCCCC--CCCcccccc
Q 018508 147 --------P------------------TWAKKALD---LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGV--RGSAHTVVR 195 (355)
Q Consensus 147 --------~------------------~~i~~aLd---aGa~GImvP~Vesaeea~~vv~a~~~pP~G~--Rg~g~~~~r 195 (355)
| .+++.+++ .|--.||+|||.+.+|++++.+.++..-.+. +|.
T Consensus 97 ~~~~~E~NP~LG~RGiR~~l~~p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~------ 170 (293)
T PF02896_consen 97 SREPKEENPALGLRGIRRSLAHPELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGI------ 170 (293)
T ss_dssp HHCH--SSGGGSSBTHHHHHHSHHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 1 12334444 4545799999999999987777664320010 111
Q ss_pred cccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc-CC---------CCCCCCHHHHHH
Q 018508 196 ASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM-GY---------LWDPGHRKVREM 265 (355)
Q Consensus 196 a~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl-G~---------~~~~~~p~v~~a 265 (355)
..+..+.+++|||||.++..+++++. .+|+++||+|||+|.+ +. .+++.||.|+.+
T Consensus 171 ------------~~~~~~~vG~MiEvPsaal~~~~~~~--~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~l 236 (293)
T PF02896_consen 171 ------------PFDPDLPVGIMIEVPSAALMADEFAK--EVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRL 236 (293)
T ss_dssp ------------TTGTT-EEEEEE-SHHHHHTHHHHHT--TSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHH
T ss_pred ------------CccccceEEEEechhHHHHHHHHHHH--HCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHH
Confidence 12456899999999999999999997 5999999999999973 32 356789999999
Q ss_pred HHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHHHHHH
Q 018508 266 MRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRS 313 (355)
Q Consensus 266 i~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~ 313 (355)
+++++++|+++|++ +||.++++|..+..++++|++.+|++++...-.+
T Consensus 237 i~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~~i~~vk 286 (293)
T PF02896_consen 237 IKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPDSIPRVK 286 (293)
T ss_dssp HHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GGGHHHHH
T ss_pred HHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHHHHHHHH
Confidence 99999999999987 5999999999999999999999999998765433
No 16
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=99.74 E-value=7.4e-17 Score=165.32 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=154.9
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CCCHH--HHHHHHHH-HH----hC----C---------CCeEEcC
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PGGIS--DALACLHA-LA----AT----G---------TPAILRL 142 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~~~~--~a~~~i~a-~~----~~----g---------~~~iVRV 142 (355)
+..-+++|. ++.++.++..+|+|.+++|+||+ |.-+. +++..+.. ++ .. | ...+||+
T Consensus 67 RRveitgP~-d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~~~~~~gk~y~l~~~~~~liVRp 145 (511)
T TIGR01344 67 RRVEITGPV-DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQIDFTDPTSGKEYALNARLAVLIVRP 145 (511)
T ss_pred CeeEEeCCC-CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCcCCCcCCCCCceeecCCCceEEEEec
Confidence 344578888 89999999999999999999999 45566 56665543 33 11 1 3569999
Q ss_pred CCCCHHH------------------------HHHHHhcC-CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccc
Q 018508 143 PESCPTW------------------------AKKALDLG-PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRAS 197 (355)
Q Consensus 143 ~~~~~~~------------------------i~~aLdaG-a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~ 197 (355)
++.+..+ ++.+++.| --+|++||+++++|++.+.+.+.+...
T Consensus 146 rG~hl~e~hv~~dg~~~~~~l~Dfgl~~~hd~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~------------- 212 (511)
T TIGR01344 146 RGWHLPERHLTIDGEAIPGSLFDFGLYFFHNARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQD------------- 212 (511)
T ss_pred CCCCCCcchhccCCCcCchHHHHHHHHHHhhHHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHH-------------
Confidence 9975321 34456664 248999999999999988777654310
Q ss_pred cCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc--cCCccEEEEChhhHHhhcC----CCCC---CCC------HHH
Q 018508 198 GYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--VDGVDCVQMGPLDLSASMG----YLWD---PGH------RKV 262 (355)
Q Consensus 198 ~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--vpgVD~l~iGp~DLs~slG----~~~~---~~~------p~v 262 (355)
.+| ...+.+.+.+||||+.|+.|++||+. -+++.++.+|..||+.|++ ..++ ++. ..+
T Consensus 213 ~lg-------lp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~ 285 (511)
T TIGR01344 213 FLG-------LPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPF 285 (511)
T ss_pred hcC-------CCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHH
Confidence 011 12356899999999999999999995 3899999999999997665 2111 111 145
Q ss_pred HHH-HHHHHHHHHhCCCceeecccC------Cc-----------hhHHHHHHCCCCE--EEecchHHHHHHHHHHHHH
Q 018508 263 REM-MRVAEKGVLGGGKAYLAGFAM------PH-----------DAPLEMKSRGYHM--VSGAVDVGLFRSAAVEDVA 320 (355)
Q Consensus 263 ~~a-i~~iv~aa~a~g~~~~g~~~~------d~-----------~~a~~~~~~G~~~--vs~~~D~~ll~~~~~~~~~ 320 (355)
..+ .+.++.+|+++|+..+||++. |+ +++.+-..+||++ +.+...+.+..+.+...+.
T Consensus 286 l~Ay~~llV~aara~G~~AIdGm~a~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwviHP~qV~ianevF~~~~~ 363 (511)
T TIGR01344 286 LNAYSKLLIQTCHRRGAHAMGGMAAFIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVAHPDLVPIAMEVFNNVMG 363 (511)
T ss_pred HHHHHHHHHHHHHHcCCCccCchhccCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCC
Confidence 666 666779999999998898854 32 1234557899996 6777777788888866554
No 17
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=99.74 E-value=1e-16 Score=165.28 Aligned_cols=209 Identities=14% Similarity=0.039 Sum_probs=153.3
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CC--CHHHHHHHHHHH-Hh----C---------------CCCeEEcC
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PG--GISDALACLHAL-AA----T---------------GTPAILRL 142 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~--~~~~a~~~i~a~-~~----~---------------g~~~iVRV 142 (355)
.-++.|.. +.++.++..+|+|.+++|+||+ |. ++.+++..+..+ +. . ....+||+
T Consensus 66 ~ei~gP~~-~~m~~nA~~s~a~~~~~D~EDsvap~w~~k~~~~~nl~~a~~~~l~~~~~~~gk~y~l~~~~~~~~l~vR~ 144 (511)
T cd00480 66 VEITGPQD-RKMVINALNSGAAVFMADFEDSSAPTWENKVEGQRNLLDAVRGTISFTDSKNGKSYRLNLLDGRATLFVRP 144 (511)
T ss_pred eEEeCCCC-hHHHHHhhcCCCCEEEeccccccCCCHHHHHHHHHHHHHHHhCcccccccCCCceeeeccCCCCceEEEec
Confidence 35777877 9999999999999999999999 45 667777665433 22 1 22469999
Q ss_pred CCCCHH--HH----------------------HHHHhcCC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccc
Q 018508 143 PESCPT--WA----------------------KKALDLGP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRAS 197 (355)
Q Consensus 143 ~~~~~~--~i----------------------~~aLdaGa-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~ 197 (355)
++.+.. ++ +.+++.|- -.|++||+++++|++.+.+.+.+.+ ...|.
T Consensus 145 rg~~~~e~~v~~~g~pv~~~l~Df~l~~fhn~~~l~~~g~gpyi~LPKves~~Ev~~~~~~~~~~E-~~~gl-------- 215 (511)
T cd00480 145 RGWHLTEKHILVDGEPVPGGLFDFGLYFFHNAHALKARGSGPYFYLPKMESPLEARLWNDVFSRAE-DYLGL-------- 215 (511)
T ss_pred CCCCCCchhhhhCCccCccchhhHHHHHHHhHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHHHH-HhcCC--------
Confidence 997532 11 11122221 2899999999999998888775531 11111
Q ss_pred cCCCCccccccCCCceEEEEEEccHHHHHHHHHHhcc--CCccEEEEChhhHHhhcCCCCC-------CC-------CHH
Q 018508 198 GYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAV--DGVDCVQMGPLDLSASMGYLWD-------PG-------HRK 261 (355)
Q Consensus 198 ~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaav--pgVD~l~iGp~DLs~slG~~~~-------~~-------~p~ 261 (355)
..+.+.+++||||+.|+.|++||+.. ++|.++.+|..||+.++|.... ++ .|-
T Consensus 216 -----------~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~~~~~~~~pd~~~~~m~~~~ 284 (511)
T cd00480 216 -----------PRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFRNHPDFVLPDRAKVTMTSPF 284 (511)
T ss_pred -----------CCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccccccCccccCCcccccccccHH
Confidence 13568999999999999999999964 8999999999999999976431 22 243
Q ss_pred HHHHHHHHHHHHHhCCCceeecccCCc-----------------hhHHHHHHCCCCE--EEecchHHHHHHHHH
Q 018508 262 VREMMRVAEKGVLGGGKAYLAGFAMPH-----------------DAPLEMKSRGYHM--VSGAVDVGLFRSAAV 316 (355)
Q Consensus 262 v~~ai~~iv~aa~a~g~~~~g~~~~d~-----------------~~a~~~~~~G~~~--vs~~~D~~ll~~~~~ 316 (355)
+......++.+|+++|...+|+++.+. +++.+-+.+||++ +.+...+.+..+.+.
T Consensus 285 l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwviHP~qV~~~n~vF~ 358 (511)
T cd00480 285 MRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWVAHPGLAPLAALVFH 358 (511)
T ss_pred HHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCcccccCHHHHHHHHHHHh
Confidence 555566799999999998888876542 2345667999986 677777788888886
No 18
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=99.74 E-value=1.2e-16 Score=164.04 Aligned_cols=212 Identities=16% Similarity=0.063 Sum_probs=154.3
Q ss_pred EEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CCCHHH--HHHHHH-HHH----hC------------CCCeEEcCCC
Q 018508 86 LYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PGGISD--ALACLH-ALA----AT------------GTPAILRLPE 144 (355)
Q Consensus 86 ~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~~~~~--a~~~i~-a~~----~~------------g~~~iVRV~~ 144 (355)
..-+++|.+ +.++.++..+|+|.+++|+||+ |.-+.. ++..+. +++ .. ....+||+++
T Consensus 68 RveitgP~~-~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~~~~~gk~y~l~~~~~~l~VRprG 146 (511)
T cd00727 68 RVEITGPVD-RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISFTSPEGKEYKLNDTPATLIVRPRG 146 (511)
T ss_pred eeEEeCCCC-HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCccCCCCceeeeCCCCcEEEEecCC
Confidence 345788887 9999999999999999999999 445555 555554 332 11 2346899999
Q ss_pred CCH------------------------HHHHHHHhcC--CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCccccccccc
Q 018508 145 SCP------------------------TWAKKALDLG--PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASG 198 (355)
Q Consensus 145 ~~~------------------------~~i~~aLdaG--a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~ 198 (355)
.+. ..++.+++.| + .|++||+++++|++.+.+.+.+... .
T Consensus 147 ~hl~e~hv~~dg~~~~~~l~Dfgl~~fhd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~-~------------ 212 (511)
T cd00727 147 WHLPEKHVLVDGEPVSGSLFDFGLYFFHNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQD-Y------------ 212 (511)
T ss_pred CCCCcchhhcCCccCcchhhhHHHHHHhhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHH-H------------
Confidence 752 1235566665 5 8999999999999988877764310 0
Q ss_pred CCCCccccccCCCceEEEEEEccHHHHHHHHHHhc-c-CCccEEEEChhhHHhhcCCCC-------CCC------CHHHH
Q 018508 199 YGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA-V-DGVDCVQMGPLDLSASMGYLW-------DPG------HRKVR 263 (355)
Q Consensus 199 ~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa-v-pgVD~l~iGp~DLs~slG~~~-------~~~------~p~v~ 263 (355)
.| ...+.+.+.+||||+.|+.|++||+. . +++.++.+|..||+.+++... .++ ...+.
T Consensus 213 lG-------lp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l 285 (511)
T cd00727 213 LG-------LPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFM 285 (511)
T ss_pred cC-------CCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHH
Confidence 11 12357899999999999999999995 3 899999999999999995432 111 12466
Q ss_pred HH-HHHHHHHHHhCCCceeecccCCc-----------------hhHHHHHHCCCCE--EEecchHHHHHHHHHHHH
Q 018508 264 EM-MRVAEKGVLGGGKAYLAGFAMPH-----------------DAPLEMKSRGYHM--VSGAVDVGLFRSAAVEDV 319 (355)
Q Consensus 264 ~a-i~~iv~aa~a~g~~~~g~~~~d~-----------------~~a~~~~~~G~~~--vs~~~D~~ll~~~~~~~~ 319 (355)
.+ .+.++.+|+++|+..+|+++... +++.+-..+||++ +.+...+.+..+.+.+.+
T Consensus 286 ~Ay~~llV~aa~a~G~~AIdGm~a~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwviHP~qV~ianevF~~~~ 361 (511)
T cd00727 286 RAYSELLIKTCHRRGAHAMGGMAAQIPIKDDPAANEAALAKVRADKLREATAGHDGTWVAHPGLVPVAMEVFDKHM 361 (511)
T ss_pred HHHHHHHHHHHHHcCCCcccchhhcCCcccchhhHHHHHHHHHHHHHHHHhCCCCcccccCHHHHHHHHHHHHhcC
Confidence 66 56699999999999888874431 1234567899996 667777777777775543
No 19
>PRK09255 malate synthase; Validated
Probab=99.73 E-value=2.3e-16 Score=162.51 Aligned_cols=214 Identities=15% Similarity=0.042 Sum_probs=155.3
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CCCHH--HHHHHHHH-HH----h----C--------CCCeEEcCC
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PGGIS--DALACLHA-LA----A----T--------GTPAILRLP 143 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~~~~--~a~~~i~a-~~----~----~--------g~~~iVRV~ 143 (355)
+..-+++|.+ +.++.++..+|+|.+++|+||+ |.-+. +++..+.. ++ . + ....+||++
T Consensus 88 RRveitgP~~-~km~~nAlnsgad~~m~D~EDa~aP~wkn~i~gq~nl~~al~~~i~~~~~~Gk~y~l~~~~~~l~VRpr 166 (531)
T PRK09255 88 RRVEITGPVD-RKMVINALNSGAKVFMADFEDSNAPTWDNVIDGQINLRDAVRGTISYTNEAGKEYRLNPKPAVLIVRPR 166 (531)
T ss_pred CeeEEeCCCC-HHHHHHHhcCCCCEEEeccccCCCCCchHHHHHHHHHHHHHcCCCCccCCCCCeeecCCCCceEEEecC
Confidence 3445788887 9999999999999999999999 45566 56655543 32 1 1 235799999
Q ss_pred CCCHH------------------------HHHHHHhcCC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCccccccccc
Q 018508 144 ESCPT------------------------WAKKALDLGP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASG 198 (355)
Q Consensus 144 ~~~~~------------------------~i~~aLdaGa-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~ 198 (355)
+.+.. .+..+++.|. -+|++||+++++|++.+.+.+.+... ..|
T Consensus 167 G~hl~e~hv~vdG~~v~~~l~Dfgl~~fhd~~~l~~~g~gp~i~LPKves~~Ev~~~~~vf~~~E~-~lG---------- 235 (531)
T PRK09255 167 GWHLPEKHVTVDGEPISGSLFDFALYFFHNAKELLAKGSGPYFYLPKLESHLEARLWNDVFVFAED-RLG---------- 235 (531)
T ss_pred CCCCCcchhhcCCcccchhHHHHHHHHHhhHHHHHhCCCCcEEeccCCCCHHHHHHHHHHHHHHHH-hcC----------
Confidence 97531 2344555543 29999999999999988888765321 011
Q ss_pred CCCCccccccCCCceEEEEEEccHHHHHHHHHHhc-c-CCccEEEEChhhHHhhc----CCCCC---CC------CHHHH
Q 018508 199 YGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA-V-DGVDCVQMGPLDLSASM----GYLWD---PG------HRKVR 263 (355)
Q Consensus 199 ~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa-v-pgVD~l~iGp~DLs~sl----G~~~~---~~------~p~v~ 263 (355)
...+.+.+.+||||+.|+.|++||+. . +++.++.+|..||+.|+ +...+ ++ ...+.
T Consensus 236 ---------lp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l 306 (531)
T PRK09255 236 ---------LPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFM 306 (531)
T ss_pred ---------CCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHH
Confidence 12357899999999999999999995 3 89999999999999874 43211 11 12466
Q ss_pred HH-HHHHHHHHHhCCCceeecccC------Cc-----------hhHHHHHHCCCCE--EEecchHHHHHHHHHHHH
Q 018508 264 EM-MRVAEKGVLGGGKAYLAGFAM------PH-----------DAPLEMKSRGYHM--VSGAVDVGLFRSAAVEDV 319 (355)
Q Consensus 264 ~a-i~~iv~aa~a~g~~~~g~~~~------d~-----------~~a~~~~~~G~~~--vs~~~D~~ll~~~~~~~~ 319 (355)
.+ .+.++.+|+++|+..+|+++. |+ +++.+-..+||++ +.+...+.+..+.+.+.+
T Consensus 307 ~Ay~~llV~aara~G~~AIdGm~a~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwviHP~qV~ianevF~~~~ 382 (531)
T PRK09255 307 RAYSRLLIKTCHKRGAHAMGGMAAFIPIKNDPEANEAALAKVRADKEREANDGHDGTWVAHPGLVPTAMEVFDKVL 382 (531)
T ss_pred HHHHHHHHHHHHHcCCCccCchhhcCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceecCHHHHHHHHHHHHHhc
Confidence 66 667779999999998888854 33 1344567999996 677777778888885444
No 20
>PRK05826 pyruvate kinase; Provisional
Probab=99.69 E-value=2.7e-16 Score=160.84 Aligned_cols=131 Identities=17% Similarity=0.147 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCC-ceEEEEEEccH
Q 018508 144 ESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEE-ELLIMCQVESE 222 (355)
Q Consensus 144 ~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~-~i~vi~mIET~ 222 (355)
..+...++++||.|++||++|+|+|++|++++.+++.. .|. ++.+++||||+
T Consensus 173 e~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~---------------------------~~~~~~~iiakIEt~ 225 (465)
T PRK05826 173 EKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE---------------------------AGCPHAKIIAKIERA 225 (465)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH---------------------------cCCcCceEEEEEcCH
Confidence 33566799999999999999999999999999877642 244 78999999999
Q ss_pred HHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeec------cc--CCc-----h
Q 018508 223 EGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAG------FA--MPH-----D 289 (355)
Q Consensus 223 ~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~------~~--~d~-----~ 289 (355)
+||+|++||+++ +|+||+|++||+.++| +|++..++++++++|+++|++++.. +. .-| .
T Consensus 226 eav~nldeI~~~--~DgImIgrgDLg~elg------~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvs 297 (465)
T PRK05826 226 EAVDNIDEIIEA--SDGIMVARGDLGVEIP------DEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVS 297 (465)
T ss_pred HHHHhHHHHHHH--cCEEEECcchhhhhcC------cHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhh
Confidence 999999999997 9999999999999998 5788889999999999999874321 11 112 2
Q ss_pred hHHHHHHCCCCEEEecchHH
Q 018508 290 APLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 290 ~a~~~~~~G~~~vs~~~D~~ 309 (355)
++...+-.|.+.+.++.++.
T Consensus 298 DVanav~dG~D~vmLS~ETA 317 (465)
T PRK05826 298 DVANAVLDGTDAVMLSGETA 317 (465)
T ss_pred hHHHHHHcCCcEEEeccccc
Confidence 34567789999999887764
No 21
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=99.66 E-value=7.7e-16 Score=158.09 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCC-CceEEEEEEccHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYE-EELLIMCQVESEEGVK 226 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n-~~i~vi~mIET~~av~ 226 (355)
..+..+++.|+++|++|||++++|++.+.+++... + .++.+++||||++||+
T Consensus 175 ~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~---------------------------~~~~~~Iia~IEt~~av~ 227 (473)
T TIGR01064 175 KDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEK---------------------------GAKDVKIIAKIENQEGVD 227 (473)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhc---------------------------CCCCceEEEEECCHHHHH
Confidence 45788899999999999999999999999887421 1 2578999999999999
Q ss_pred HHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeeccc-------C-------CchhHH
Q 018508 227 RAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFA-------M-------PHDAPL 292 (355)
Q Consensus 227 nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~-------~-------d~~~a~ 292 (355)
|++||+++ .|+++||++||+.++| ++++..++++++.+|+++|++++ ... . ...++.
T Consensus 228 nl~eI~~~--~dgi~iG~gDL~~~lg------~~~l~~~~~~ii~aaraag~pvi-~atqmLeSM~~~p~PTRAe~~dv~ 298 (473)
T TIGR01064 228 NIDEIAEA--SDGIMVARGDLGVEIP------AEEVPIAQKKMIRKCNRAGKPVI-TATQMLDSMIKNPRPTRAEVSDVA 298 (473)
T ss_pred hHHHHHhh--CCcEEEchHHHHhhcC------cHHHHHHHHHHHHHHHHcCCCEE-EEChhhhhhhcCCCCCcccHHHHH
Confidence 99999985 6899999999999998 37899999999999999998743 222 2 346678
Q ss_pred HHHHCCCCEEEecchHHH
Q 018508 293 EMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 293 ~~~~~G~~~vs~~~D~~l 310 (355)
.++..|++++.++.|+.+
T Consensus 299 ~~v~~G~d~v~ls~eta~ 316 (473)
T TIGR01064 299 NAILDGTDAVMLSGETAK 316 (473)
T ss_pred HHHHcCCCEEEEcchhhc
Confidence 899999999999999864
No 22
>PTZ00300 pyruvate kinase; Provisional
Probab=99.66 E-value=9e-16 Score=156.29 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=115.5
Q ss_pred eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE
Q 018508 138 AILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC 217 (355)
Q Consensus 138 ~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~ 217 (355)
.++|+++.+...++++++.|+++|.+|||++++|++++++++.. .+.++.+++
T Consensus 141 ~l~~ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~---------------------------~~~~~~Iia 193 (454)
T PTZ00300 141 DLPAVSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGA---------------------------KGGDIMIIC 193 (454)
T ss_pred CCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHh---------------------------cCCCceEEE
Confidence 57888888999999999999999999999999999999999831 134678999
Q ss_pred EEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-
Q 018508 218 QVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H- 288 (355)
Q Consensus 218 mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~- 288 (355)
+|||++||+|++||+ +++|+||||++||+.++| ++++..++++++++|+++|++++- + +... |
T Consensus 194 KIEt~eav~nldeI~--~~~DgImVaRGDLgvei~------~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PT 265 (454)
T PTZ00300 194 KIENHQGVQNIDSII--EESDGIMVARGDLGVEIP------AEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPT 265 (454)
T ss_pred EECCHHHHHhHHHHH--HhCCEEEEecchhhhhcC------hHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCC
Confidence 999999999999999 589999999999999998 678889999999999999987432 1 1111 2
Q ss_pred ----hhHHHHHHCCCCEEEecchHH
Q 018508 289 ----DAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 289 ----~~a~~~~~~G~~~vs~~~D~~ 309 (355)
.++...+-.|.+.+.++.++.
T Consensus 266 RAEvsDVanAv~dG~DavMLS~ETA 290 (454)
T PTZ00300 266 RAEVSDVANAVFNGADCVMLSGETA 290 (454)
T ss_pred chhHHHHHHHHHhCCcEEEEechhc
Confidence 335567789999999987774
No 23
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=99.65 E-value=2.6e-15 Score=163.22 Aligned_cols=206 Identities=18% Similarity=0.161 Sum_probs=145.6
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCc--------EEEEeCCCCC---------CCHH--HH---------HHHHHHHH-hC
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYD--------FVVVDMEHGP---------GGIS--DA---------LACLHALA-AT 134 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D--------~vilDlEh~~---------~~~~--~a---------~~~i~a~~-~~ 134 (355)
...+.++.|+.+|..++.+...|+| +++++-+..| ...+ .+ ..+-..++ ..
T Consensus 527 ~~~i~v~aN~~~~~da~~a~~~Ga~GIGL~RTE~mf~~~~~~p~~~~~i~a~~eeer~~~l~~l~~~q~~~~~~i~~~~~ 606 (856)
T TIGR01828 527 IRKLKVRANADTPEDALTARKFGAEGIGLCRTEHMFFGAERIPAVRKMILADSEEERQKALNKLLPFQKEDFKGLFKAME 606 (856)
T ss_pred CceEEEEEcCCCHHHHHHHHhCCCCEEEehhCchhhhcCCCCcchhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999985 5555554444 1212 11 11111122 46
Q ss_pred CCCeEEcCCCC---------------------------------C----H------------------HHHHHHHhc---
Q 018508 135 GTPAILRLPES---------------------------------C----P------------------TWAKKALDL--- 156 (355)
Q Consensus 135 g~~~iVRV~~~---------------------------------~----~------------------~~i~~aLda--- 156 (355)
+.++.||.-+. . | .+++.++++
T Consensus 607 ~~pVtiR~lD~pl~eflp~~~~~~~~~g~dk~~~~~~~~~~~~~~~E~NP~LG~RGiRl~l~~pei~~~QlrAil~Aa~~ 686 (856)
T TIGR01828 607 GLPVTIRLLDPPLHEFLPHTEELQKELAEDMGLTLAEILKRVEELHEVNPMLGHRGCRLGITYPEIYEMQVRAIMEAAVE 686 (856)
T ss_pred CCEEEEEccCccccccCCchhhHhHHhhhhcCCchhhhhhhccCCCCCCCccccchhhhccCChHHHHHHHHHHHHHHHH
Confidence 78889998774 0 1 112333333
Q ss_pred ----CC---CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 157 ----GP---QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 157 ----Ga---~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
|. --||+|||.+.+|++++.+.++......+. ..|. +-.+.+++|||||.++..++
T Consensus 687 ~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~---------~~g~--------~~~~~iG~MiE~P~aal~ad 749 (856)
T TIGR01828 687 VKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFK---------EYGV--------TVPYEIGTMIEIPRAALTAD 749 (856)
T ss_pred HHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHH---------hcCC--------ccCCeEEEEEehHHHHHHHH
Confidence 52 379999999999998777665432100000 0010 11268999999999999999
Q ss_pred HHhccCCccEEEEChhhHHhhc-CCCC------------------CC----CCHHHHHHHHHHHHHHHh--CCCc--eee
Q 018508 230 DIAAVDGVDCVQMGPLDLSASM-GYLW------------------DP----GHRKVREMMRVAEKGVLG--GGKA--YLA 282 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~sl-G~~~------------------~~----~~p~v~~ai~~iv~aa~a--~g~~--~~g 282 (355)
+|++ .+|+++||+|||+|.+ |+.. +| +||.|.+++++++++|++ +|++ +||
T Consensus 750 ~la~--~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 750 KIAE--EADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHH--hCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 9998 6999999999999963 4321 33 389999999999999998 6766 588
Q ss_pred cccCCchhHHHHHHCCCCEEEecchH
Q 018508 283 GFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 283 ~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
.+++++..++.+.++|++.+|+++..
T Consensus 828 E~a~dp~~i~~l~~~Gi~~~S~sp~~ 853 (856)
T TIGR01828 828 EHGGDPSSIEFCHKIGLNYVSCSPYR 853 (856)
T ss_pred CCcCCHHHHHHHHHCCCCEEEEChhh
Confidence 88899999999999999999998754
No 24
>PLN02623 pyruvate kinase
Probab=99.63 E-value=3.1e-15 Score=155.45 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
.|+.+++.|+|.|-+.+|+++++++++.++++. .|.++.+++||||++||+|+
T Consensus 283 di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~---------------------------~~~~~~iiakIEt~eaVeNl 335 (581)
T PLN02623 283 DIKFGVENKVDFYAVSFVKDAQVVHELKDYLKS---------------------------CNADIHVIVKIESADSIPNL 335 (581)
T ss_pred HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHH---------------------------cCCcceEEEEECCHHHHHhH
Confidence 577889999999999999999999999988753 25578999999999999999
Q ss_pred HHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee--------cccCCch-----hHHHHH
Q 018508 229 EDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA--------GFAMPHD-----APLEMK 295 (355)
Q Consensus 229 eeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g--------~~~~d~~-----~a~~~~ 295 (355)
+||++ ++|+||||++||+.++|+ |++..++++++++|+++|++++. .....|. ++..++
T Consensus 336 deIl~--g~DgImIgrgDLgvelg~------~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av 407 (581)
T PLN02623 336 HSIIT--ASDGAMVARGDLGAELPI------EEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAV 407 (581)
T ss_pred HHHHH--hCCEEEECcchhhhhcCc------HHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHH
Confidence 99999 899999999999999987 68889999999999999986431 1123453 778899
Q ss_pred HCCCCEEEecchHHH
Q 018508 296 SRGYHMVSGAVDVGL 310 (355)
Q Consensus 296 ~~G~~~vs~~~D~~l 310 (355)
..|++++.++.|+.+
T Consensus 408 ~dG~d~vmLs~Eta~ 422 (581)
T PLN02623 408 REGADAVMLSGETAH 422 (581)
T ss_pred HcCCCEEEecchhhc
Confidence 999999999999863
No 25
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.62 E-value=1.8e-14 Score=156.72 Aligned_cols=213 Identities=16% Similarity=0.146 Sum_probs=148.9
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCcE--------EEEeCCCCCC--------CHHH---H---------HHHHHHHH-hC
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYDF--------VVVDMEHGPG--------GISD---A---------LACLHALA-AT 134 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D~--------vilDlEh~~~--------~~~~---a---------~~~i~a~~-~~ 134 (355)
-..+.++.|+.+|..++.+...|+|. +|++-+..+. +.++ + ......++ ..
T Consensus 533 ~~~~~V~aNa~~p~da~~a~~~GA~GIGL~RTE~mf~~~~r~~~~~~mi~~~~eeer~~al~~l~~~Q~~~f~~i~~am~ 612 (879)
T PRK09279 533 IRRLGVRANADTPEDARTAREFGAEGIGLCRTEHMFFGEDRIPAVREMILADDEEERRAALAKLLPMQREDFKGIFEAMD 612 (879)
T ss_pred ceEEEEEEcCCCHHHHHHHHhCCCCEEEehhccHhHhcCCCCCchHHHhhcCCHHHHHHHHHHhhhhHHHHHHHHHHHhC
Confidence 35799999999999999999999865 3444443331 2221 1 11111112 46
Q ss_pred CCCeEEcCCCC--------------------C-----------------H------------------HHHHHHHhc---
Q 018508 135 GTPAILRLPES--------------------C-----------------P------------------TWAKKALDL--- 156 (355)
Q Consensus 135 g~~~iVRV~~~--------------------~-----------------~------------------~~i~~aLda--- 156 (355)
|.++.||.-++ . | .++++++++
T Consensus 613 g~pVtIRlLD~plheflp~~~~~~~~~a~~~g~~~~k~~~~~~~~~E~NPmLG~RG~Rl~l~~pei~~~QlrAI~~Aa~~ 692 (879)
T PRK09279 613 GLPVTIRLLDPPLHEFLPHTEEEIEELAEALGLSLEELKARVEALHEFNPMLGHRGCRLGITYPEIYEMQARAIFEAAVE 692 (879)
T ss_pred CCEEEEEeccCcccccCCccHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCccccchhhcccCChHHHHHHHHHHHHHHHH
Confidence 78899998665 1 0 112344433
Q ss_pred ----CC---CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 157 ----GP---QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 157 ----Ga---~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
|. --||+|||.+.+|++.+.+.+...-...+ ..+|. .-++.+++|||+|.|+..++
T Consensus 693 ~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~---------~e~g~--------~~~~~vG~MIEvP~Aal~ad 755 (879)
T PRK09279 693 LKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVF---------AEKGV--------KLDYKVGTMIELPRAALTAD 755 (879)
T ss_pred HHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHH---------HhhCC--------CCCceEEEEEehHHHHHhHH
Confidence 42 24999999999999877665432100000 00111 12467999999999999999
Q ss_pred HHhccCCccEEEEChhhHHhhc-CCC------------------CCCCC----HHHHHHHHHHHHHHHh--CCCc--eee
Q 018508 230 DIAAVDGVDCVQMGPLDLSASM-GYL------------------WDPGH----RKVREMMRVAEKGVLG--GGKA--YLA 282 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~sl-G~~------------------~~~~~----p~v~~ai~~iv~aa~a--~g~~--~~g 282 (355)
+|++ .+|+++||+|||+|.+ |+. .+|.| |.|.++++++++++++ .+++ +||
T Consensus 756 ~iA~--~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 756 EIAE--EAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHH--hCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9998 6999999999999953 332 34556 8899999999999997 5655 588
Q ss_pred cccCCchhHHHHHHCCCCEEEecchHHHHHHHH
Q 018508 283 GFAMPHDAPLEMKSRGYHMVSGAVDVGLFRSAA 315 (355)
Q Consensus 283 ~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~ 315 (355)
..+++|..++.+.++|++.||+++..+...+-+
T Consensus 834 E~ggdp~~i~~l~~lGld~vS~sP~~Vp~arla 866 (879)
T PRK09279 834 EHGGDPASIEFCHKVGLDYVSCSPYRVPIARLA 866 (879)
T ss_pred CCccCHHHHHHHHHCCCCEEEECHHHHHHHHHH
Confidence 888899999999999999999999987665443
No 26
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=99.47 E-value=3.5e-13 Score=138.34 Aligned_cols=204 Identities=18% Similarity=0.180 Sum_probs=146.1
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEE-EEeCCC------C-CCCHHHHH---HHHHHHHhCCCCeEEcCCCC--------
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFV-VVDMEH------G-PGGISDAL---ACLHALAATGTPAILRLPES-------- 145 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~v-ilDlEh------~-~~~~~~a~---~~i~a~~~~g~~~iVRV~~~-------- 145 (355)
..+-+|+|.+=.--.+.+...|+|.| ++-.|- . |..+++.. .++.+ ..+.++..|.-+.
T Consensus 441 ~ri~l~mNAGL~~D~~~l~e~gadGIGLyRTEi~FM~as~fP~~EeQ~a~Yr~vL~~--~~~kpVT~RTLDIGgDK~LpY 518 (756)
T COG3605 441 ERIKLLMNAGLSVDLPQLLESGADGIGLYRTEIQFMLASGFPSEEEQEAQYRGVLQA--ANGKPVTFRTLDIGGDKVLPY 518 (756)
T ss_pred ceeeeeecCCcccccHHHhhCCCcceeeeehhhHHHHhccCCchHHHHHHHHHHHHh--cCCCCeeEEeeccCCCcccCC
Confidence 45678888775555677888899875 333332 2 44555443 34444 3455555554332
Q ss_pred ------C--------------HH----HHHHHHhc--C--CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccc
Q 018508 146 ------C--------------PT----WAKKALDL--G--PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRAS 197 (355)
Q Consensus 146 ------~--------------~~----~i~~aLda--G--a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~ 197 (355)
+ |. ++++.|.+ | --.||+|||.+.+|++++.+.+... +. ...
T Consensus 519 ~~i~EeNP~LGWR~IR~tLDrP~i~~~Q~RAmLrAs~g~g~L~imLPMVt~v~E~~~Ar~li~ra------~~----~v~ 588 (756)
T COG3605 519 MPISEENPALGWRGIRLTLDRPEIFRIQVRAMLRASAGTGNLRILLPMVTEVDEVDEARRLIERA------VR----EVS 588 (756)
T ss_pred CcccccCccccceeeEeecCChhHHHHHHHHHHHhhCCCcCceeeeecccchHHHHHHHHHHHHH------HH----HHH
Confidence 2 21 24556664 2 3479999999999998777766421 00 011
Q ss_pred cCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc-----CC-----CCCCCCHHHHHHHH
Q 018508 198 GYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM-----GY-----LWDPGHRKVREMMR 267 (355)
Q Consensus 198 ~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl-----G~-----~~~~~~p~v~~ai~ 267 (355)
.+|. ..-....+++|+|.|.-+-.+++++. .||+|++|+|||.|.+ |. .++.-||.++.+++
T Consensus 589 ~~~~------~~~~~~~iG~MlEvPsll~~L~~L~~--~vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk 660 (756)
T COG3605 589 EMGG------YLPPKPRIGAMLEVPSLLFQLDELAK--RVDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALK 660 (756)
T ss_pred HhcC------CCcCCCCcceeeehhHHHHhHHHHHh--hCCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHH
Confidence 1110 11235679999999999999999997 7999999999999976 32 35778999999999
Q ss_pred HHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchH
Q 018508 268 VAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 268 ~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+|+++|..+|++ .||.++++|-.+..++.+||+.+|+++-.
T Consensus 661 ~I~~a~~~~~~pVtlCGEMAg~Pl~A~~LigLGfrslSMn~~~ 703 (756)
T COG3605 661 QIVRAAERHGTPVTLCGEMAGDPLSAMALIGLGFRSLSMNPRS 703 (756)
T ss_pred HHHHHHHhcCCCeeehhhhcCChHHHHHHHhcCcCccccCccc
Confidence 999999999987 59999999999999999999999998765
No 27
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=99.46 E-value=6.1e-13 Score=136.77 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=106.3
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..+..+++.|+|.|-+.+|+++++++.+.+++.. .+.++.+++||||++||+|
T Consensus 178 ~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~---------------------------~~~~~~iiakIEt~~av~n 230 (480)
T cd00288 178 ADLRFGVEQGVDMIFASFVRKASDVLEIREVLGE---------------------------KGKDIKIIAKIENQEGVNN 230 (480)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHh---------------------------cCCCceEEEEECCHHHHHh
Confidence 4578899999999999999999999999988753 2456889999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~ 294 (355)
++||+++ +|+||+|++||+.++| +|++..++++++++|+++|++++- + +... | .++...
T Consensus 231 ldeI~~~--~DgImIargDLg~e~g------~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVana 302 (480)
T cd00288 231 FDEILEA--SDGIMVARGDLGVEIP------AEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANA 302 (480)
T ss_pred HHHHHHh--cCEEEECcchhhhhcC------hHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHH
Confidence 9999997 9999999999999998 479999999999999999987431 1 1111 2 345567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|.+.+.++.++.
T Consensus 303 v~dG~D~vmLS~ETa 317 (480)
T cd00288 303 VLDGTDCVMLSGETA 317 (480)
T ss_pred HHhCCcEEEEechhc
Confidence 789999999988775
No 28
>PRK09206 pyruvate kinase; Provisional
Probab=99.38 E-value=6.3e-12 Score=128.85 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=108.9
Q ss_pred EcCCCCCH---HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCC-CceEE
Q 018508 140 LRLPESCP---TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYE-EELLI 215 (355)
Q Consensus 140 VRV~~~~~---~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n-~~i~v 215 (355)
+.+|.... ..++.+++.|+|-|-+.+|+++++++++.+++.. .| +++.+
T Consensus 165 ~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~---------------------------~~~~~~~i 217 (470)
T PRK09206 165 IALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKA---------------------------HGGENIQI 217 (470)
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHH---------------------------cCCCCceE
Confidence 34454443 3578889999999999999999999999887752 12 36889
Q ss_pred EEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeec------ccCC--
Q 018508 216 MCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAG------FAMP-- 287 (355)
Q Consensus 216 i~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~------~~~d-- 287 (355)
+++|||++||+|++||+++ +|+||||++||+.++| ++++..+++++++.|+++|++++-. +..+
T Consensus 218 iaKIEt~eav~nldeIl~~--~DgImVaRGDLgvelg------~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~ 289 (470)
T PRK09206 218 ISKIENQEGLNNFDEILEA--SDGIMVARGDLGVEIP------VEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPR 289 (470)
T ss_pred EEEECCHHHHHhHHHHHHh--CCEEEECcchhhhhcC------HHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCC
Confidence 9999999999999999996 9999999999999998 5788889999999999999875321 1111
Q ss_pred c-----hhHHHHHHCCCCEEEecchHH
Q 018508 288 H-----DAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 288 ~-----~~a~~~~~~G~~~vs~~~D~~ 309 (355)
| .++...+-.|.+.+.++.++.
T Consensus 290 PTRAEvsDVanav~dG~DavMLS~ETA 316 (470)
T PRK09206 290 PTRAEAGDVANAILDGTDAVMLSGESA 316 (470)
T ss_pred CCchhhHHHHHHhhhCCcEEEEechhc
Confidence 2 345567889999999987774
No 29
>PRK06354 pyruvate kinase; Provisional
Probab=99.34 E-value=8.5e-12 Score=131.12 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..++.+++.|+|.|-+.+|+++++++++.+++.. +.+.++.++++|||++||+|
T Consensus 182 ~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~--------------------------~~~~~~~iiaKIEt~eav~n 235 (590)
T PRK06354 182 EDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEE--------------------------HNGKHIPIIAKIEKQEAIDN 235 (590)
T ss_pred HHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHH--------------------------hcCCCceEEEEECCHHHHHh
Confidence 3578889999999999999999999999887731 11456899999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~ 294 (355)
++||+++ +|+||||++||+.++| ++++..++++++++|+++|++++- + +... | .++...
T Consensus 236 ldeI~~~--~DgImVaRGDLgve~g------~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNa 307 (590)
T PRK06354 236 IDAILEL--CDGLMVARGDLGVEIP------AEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANA 307 (590)
T ss_pred HHHHHHh--cCEEEEccchhhcccC------cHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHH
Confidence 9999986 9999999999999998 678889999999999999987532 1 1111 2 345567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|.+.+.++.++.
T Consensus 308 v~DG~DavMLS~ETA 322 (590)
T PRK06354 308 ILDGTDAVMLSNETA 322 (590)
T ss_pred hhhCCcEEEeccccc
Confidence 889999999987764
No 30
>PRK06247 pyruvate kinase; Provisional
Probab=99.29 E-value=2.6e-11 Score=124.32 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..+..+++.|++.|-+.+|+++++++.+.+.+. .++.++++|||++||+|
T Consensus 177 ~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~------------------------------~~~~iiaKIEt~eav~n 226 (476)
T PRK06247 177 ADLEFALELGVDWVALSFVQRPEDVEEVRKIIG------------------------------GRVPVMAKIEKPQAIDR 226 (476)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh------------------------------hcCeEEEEECCHHHHHh
Confidence 457889999999999999999999999998872 14679999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeec------ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAG------FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~------~~~d--~-----~~a~~~ 294 (355)
++||+++ +|++|||++||+.++|+ +++..+++++++.|+++|++++-. +... | .++...
T Consensus 227 ldeI~~~--~DgImVaRGDLgve~g~------~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNA 298 (476)
T PRK06247 227 LEAIVEA--SDAIMVARGDLGVEVPL------EQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATA 298 (476)
T ss_pred HHHHHHH--cCEEEEccchhccccCH------HHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHH
Confidence 9999986 99999999999999997 688889999999999999874321 1111 2 345567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|.+.+.++.++.
T Consensus 299 V~dG~DavMLS~ETA 313 (476)
T PRK06247 299 VLDGADAVMLSAETA 313 (476)
T ss_pred HHhCCcEEEEcchhc
Confidence 889999999997764
No 31
>PRK08187 pyruvate kinase; Validated
Probab=99.24 E-value=5.5e-11 Score=122.61 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=90.0
Q ss_pred eEEcCCCCCHHH---HHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceE
Q 018508 138 AILRLPESCPTW---AKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELL 214 (355)
Q Consensus 138 ~iVRV~~~~~~~---i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~ 214 (355)
.-||+|..+..+ +..++. ++++|++|+|++++|++.+.+.+... |..+ ...+.
T Consensus 303 ~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~--~~~~---------------------~~~~~ 358 (493)
T PRK08187 303 TALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALAAR--RPDD---------------------WRKLG 358 (493)
T ss_pred ceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHHHh--CCCC---------------------CCCCe
Confidence 357888876654 555666 69999999999999999999888531 1000 12578
Q ss_pred EEEEEccHHHHHHHHHHh--cc-CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee
Q 018508 215 IMCQVESEEGVKRAEDIA--AV-DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL 281 (355)
Q Consensus 215 vi~mIET~~av~nieeIa--av-pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~ 281 (355)
|+++|||++|++|+++|+ +. +++++|+||.+||+.++|... +....++++.+|+++|++++
T Consensus 359 IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~------~p~~Qk~II~~craagkpvI 422 (493)
T PRK08187 359 LVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFER------LAEMQEEILWLCEAAHVPVI 422 (493)
T ss_pred EEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCccc------ChHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999 43 679999999999999999753 33447899999999998743
No 32
>PLN02626 malate synthase
Probab=99.23 E-value=5.8e-10 Score=115.13 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=140.5
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCC-CCHHHHHH----HHHHHHh--------CC---------CCeEEcCCCCCH-----
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGP-GGISDALA----CLHALAA--------TG---------TPAILRLPESCP----- 147 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~-~~~~~a~~----~i~a~~~--------~g---------~~~iVRV~~~~~----- 147 (355)
+..++-.+..+|++.++.|+||+. ..+....+ +.++++. .| ...+||..+..-
T Consensus 100 drkm~inalNSga~~~maDfEDs~sPtW~n~i~Gq~nl~~a~~~~i~~~~~~~Gk~y~l~~~~a~l~vRpRG~hl~E~hv 179 (551)
T PLN02626 100 ERKMVINALNSGAKVFMADFEDSLSPTWENLMRGQVNLRDAVRGTITFTDKARGKVYKLNDKTAKLFVRPRGWHLPEAHI 179 (551)
T ss_pred cHHHHHHHHcCCCCEEEecCCccCCCcchhHHHHHHHHHHHhcCCCccccCCCCceEeeCCCcceEEEecCcccCCcchh
Confidence 467777888999999999999993 33333221 2233321 12 235899876521
Q ss_pred -------------------HHHHHHHhc--CC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccc
Q 018508 148 -------------------TWAKKALDL--GP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGY 205 (355)
Q Consensus 148 -------------------~~i~~aLda--Ga-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y 205 (355)
...+..++. |. -.|++||+++++|++...+.+.+.+ ++
T Consensus 180 ~vdG~pv~g~L~DfgL~~fhn~~~l~~~~~GsgpYfyLPKles~~Ear~w~dvf~~~E--------------------~~ 239 (551)
T PLN02626 180 LVDGEPATGSLFDFGLYFFHNYAAFRAKQGGFGPFFYLPKMEHSREARLWNDVFEAAE--------------------KM 239 (551)
T ss_pred ccCCCCCccHHHHHHHHHHhhHHHHHhccCCCCceEeccCCCCHHHHHHHHHHHHHHH--------------------HH
Confidence 012445555 54 4799999999999998888776542 11
Q ss_pred cccCCCceEEEEEEccHHHHHHHHHHhc-c-CCccEEEEChhhH----HhhcCCCCCC---CCHH----HHHHH---HHH
Q 018508 206 LSNYEEELLIMCQVESEEGVKRAEDIAA-V-DGVDCVQMGPLDL----SASMGYLWDP---GHRK----VREMM---RVA 269 (355)
Q Consensus 206 ~~~~n~~i~vi~mIET~~av~nieeIaa-v-pgVD~l~iGp~DL----s~slG~~~~~---~~p~----v~~ai---~~i 269 (355)
+.-..+.+.+.+||||+.|+-|++||+. . +++-++.+|..|| ...+|...++ +... +..+. +.+
T Consensus 240 lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~ll 319 (551)
T PLN02626 240 AGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLL 319 (551)
T ss_pred hCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHH
Confidence 1123467999999999999999999994 5 8999999999999 6677765433 2222 33333 488
Q ss_pred HHHHHhCCCceeecccCCc-----------------hhHHHHHHCCCCE--EEecchHHHHHHHHHHHH
Q 018508 270 EKGVLGGGKAYLAGFAMPH-----------------DAPLEMKSRGYHM--VSGAVDVGLFRSAAVEDV 319 (355)
Q Consensus 270 v~aa~a~g~~~~g~~~~d~-----------------~~a~~~~~~G~~~--vs~~~D~~ll~~~~~~~~ 319 (355)
+.+|+++|...+||++.+. ++..+-..+||++ +.+..-+.+..+.+...+
T Consensus 320 V~ach~rG~~AIgGM~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wViHP~~V~~~~evF~~~~ 388 (551)
T PLN02626 320 IKTCHKRGVHAMGGMAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAAHPGLIPLAMEVFDGHM 388 (551)
T ss_pred HHHHHhcCCcccccccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeecChhHHHHHHHHHHHhc
Confidence 9999999999889887732 1234556899985 556666667777776544
No 33
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=98.95 E-value=6e-09 Score=103.58 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..+..+++.|++.|.+++|+++++++++.+.+... ..++.+++.|||++|++|
T Consensus 180 ~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~---------------------------~~~~~iiaKIE~~~~v~n 232 (348)
T PF00224_consen 180 EDIKFAVENGVDFIALSFVRSAEDVKELRKILGEK---------------------------GKDIKIIAKIETKEAVEN 232 (348)
T ss_dssp HHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCT---------------------------TTTSEEEEEE-SHHHHHT
T ss_pred HHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhc---------------------------CcccceeeccccHHHHhh
Confidence 35778899999999999999999999999988631 135789999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-c----cCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-F----AMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-~----~~d--~-----~~a~~~ 294 (355)
++||+.. .|+|++..+||...++.. .+..+.++++..|+++|++++- + + ... | .++...
T Consensus 233 l~eI~~~--sDgimiaRGDLg~e~~~e------~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~na 304 (348)
T PF00224_consen 233 LDEILEA--SDGIMIARGDLGVEIPFE------KVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANA 304 (348)
T ss_dssp HHHHHHH--SSEEEEEHHHHHHHSTGG------GHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHH
T ss_pred HHHHhhh--cCeEEEecCCcceeeeHH------HHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHH
Confidence 9999973 699999999999999863 6778889999999999987432 1 1 111 2 234456
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+..|.+.+.++.++.
T Consensus 305 v~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 305 VLDGADAVMLSGETA 319 (348)
T ss_dssp HHHT-SEEEESHHHH
T ss_pred HHcCCCEEEecCCcC
Confidence 778999999997775
No 34
>PRK06739 pyruvate kinase; Validated
Probab=98.91 E-value=1.1e-08 Score=101.57 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..+..+++.|++.|-+.+|+++++++.+.+.++.. | ..++.+++.|||++|++|
T Consensus 169 ~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~-----g---------------------~~~~~IiaKIE~~~av~n 222 (352)
T PRK06739 169 KDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQY-----K---------------------ETSPNLIAKIETMEAIEN 222 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHc-----C---------------------CCCCcEEEEECCHHHHHH
Confidence 45788999999999999999999999999988531 1 124679999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~ 294 (355)
+++|+. ..|+|++..+||...+++ +.+....++++..|+++|++++- + +... | .++...
T Consensus 223 l~eI~~--~sDgimVARGDLgve~~~------e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVana 294 (352)
T PRK06739 223 FQDICK--EADGIMIARGDLGVELPY------QFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQA 294 (352)
T ss_pred HHHHHH--hcCEEEEECcccccccCH------HHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHH
Confidence 999997 369999999999988876 46778889999999999987431 1 1111 2 235567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+..|.+.+.++.++.
T Consensus 295 V~dG~D~vMLS~ETA 309 (352)
T PRK06739 295 VLDGTNAVMLSAESA 309 (352)
T ss_pred HHhCCcEEEEccccc
Confidence 889999999987764
No 35
>PTZ00066 pyruvate kinase; Provisional
Probab=98.84 E-value=2.4e-08 Score=103.40 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=101.0
Q ss_pred HH-HHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 149 WA-KKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 149 ~i-~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
.| +.+++.|+|.|-+.+|+++++++++.+.+... ..++.+++.|||++|++|
T Consensus 214 dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~---------------------------g~~~~IiAKIE~~~av~N 266 (513)
T PTZ00066 214 DILNFAIPMGCDFIALSFVQSADDVRLCRQLLGER---------------------------GRHIKIIPKIENIEGLIN 266 (513)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhC---------------------------CCCceEEEEECCHHHHHH
Confidence 45 67889999999999999999999999988521 124789999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~ 294 (355)
++||+. ..|||++..+||...+++ ++|..+.+++++.|+++|++++- + +... | .++...
T Consensus 267 ldeIl~--~sDGIMVARGDLGvEip~------e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNA 338 (513)
T PTZ00066 267 FDEILA--ESDGIMVARGDLGMEIPP------EKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANA 338 (513)
T ss_pred HHHHHH--hcCEEEEEccccccccCh------HHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHH
Confidence 999997 479999999999988875 35667789999999999987532 1 1111 2 234567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|.+.+.++.++.
T Consensus 339 V~DG~DavMLSgETA 353 (513)
T PTZ00066 339 VLDGTDCVMLSGETA 353 (513)
T ss_pred HHhCCcEEEecchhc
Confidence 889999998887764
No 36
>PLN02762 pyruvate kinase complex alpha subunit
Probab=98.81 E-value=4.4e-08 Score=101.48 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
.+..+++.|+|.|-+.+|+++++++.+.+.+... |. ..++.+++.||+++|++|+
T Consensus 208 di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~-----g~--------------------~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 208 DIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAAR-----SR--------------------DSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred HHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHc-----CC--------------------CCCceEEEEeCCHHHHHHH
Confidence 4677899999999999999999999999988531 11 1257899999999999999
Q ss_pred HHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHHH
Q 018508 229 EDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEMK 295 (355)
Q Consensus 229 eeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~~ 295 (355)
+||++ ..|+|++..+||...+++ ++|....++++..|+.+||+++- + +... | .++...+
T Consensus 263 ~eIi~--~sDgiMVARGDLGvEip~------e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAV 334 (509)
T PLN02762 263 EEIIR--ASDGAMVARGDLGAQIPL------EQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAV 334 (509)
T ss_pred HHHHH--hcCEEEEecCccccccCH------HHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHH
Confidence 99997 479999999999988875 46778889999999999987532 1 1111 2 3455678
Q ss_pred HCCCCEEEecchHH
Q 018508 296 SRGYHMVSGAVDVG 309 (355)
Q Consensus 296 ~~G~~~vs~~~D~~ 309 (355)
-.|.+.+.++.++.
T Consensus 335 lDGtDavMLSgETA 348 (509)
T PLN02762 335 RQRADALMLSGESA 348 (509)
T ss_pred HhCCCEEEEcchhc
Confidence 89999999997774
No 37
>PLN02461 Probable pyruvate kinase
Probab=98.79 E-value=5.1e-08 Score=101.04 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=100.9
Q ss_pred HH-HHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 149 WA-KKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 149 ~i-~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
.| +.+++.|+|.|-+.+|+++++++.+.+.+... ..++.+++.|||++||+|
T Consensus 198 di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~---------------------------~~~~~IiAKIE~~~av~n 250 (511)
T PLN02461 198 DILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEH---------------------------AKSILLISKVENQEGLDN 250 (511)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhC---------------------------CCCCCEEEEECCHHHHHH
Confidence 45 56789999999999999999999999988521 124679999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-c-----ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-G-----FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~-----~~~d--~-----~~a~~~ 294 (355)
++||+. ..|+|++..+||...+++ ++|..+.+++++.|+++|++++- + +... | .++...
T Consensus 251 l~eIi~--~sDgIMVARGDLGvEip~------e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanA 322 (511)
T PLN02461 251 FDDILA--ESDAFMVARGDLGMEIPI------EKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANA 322 (511)
T ss_pred HHHHHH--hcCEEEEeccccccccCH------HHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHH
Confidence 999997 479999999999988876 46777889999999999987532 1 1111 2 234567
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|.+.+.++.++.
T Consensus 323 V~dG~D~vMLS~ETA 337 (511)
T PLN02461 323 VLDGTDCVMLSGETA 337 (511)
T ss_pred HHhCCcEEEEechhc
Confidence 789999999997764
No 38
>PLN02765 pyruvate kinase
Probab=98.75 E-value=7.3e-08 Score=100.06 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=100.5
Q ss_pred HH-HHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 149 WA-KKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 149 ~i-~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
.+ ..+++.|+|.|-+.+|+++++++.+.+.+... | ...+.+++.|||++|++|
T Consensus 211 di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~-----g---------------------~~~~~IiaKIE~~~av~n 264 (526)
T PLN02765 211 VISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSL-----G---------------------LSQTQIFAKIENVEGLTH 264 (526)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhc-----C---------------------CCCCcEEEEECCHHHHHH
Confidence 45 46788999999999999999999999988521 1 124679999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc-----cCC--c-----hhHHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF-----AMP--H-----DAPLEMK 295 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~-----~~d--~-----~~a~~~~ 295 (355)
++||+. ..|+|++..+||...++. .+|..+.++++..|+++||+++.+- ... | .++...+
T Consensus 265 l~eIi~--~sDgIMVARGDLGvEip~------e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV 336 (526)
T PLN02765 265 FDEILQ--EADGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAV 336 (526)
T ss_pred HHHHHH--hcCEEEEecCccccccCH------HHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHH
Confidence 999997 469999999999988875 4677788999999999998765221 001 2 2345677
Q ss_pred HCCCCEEEecchHH
Q 018508 296 SRGYHMVSGAVDVG 309 (355)
Q Consensus 296 ~~G~~~vs~~~D~~ 309 (355)
-.|.+.+.++.++.
T Consensus 337 ~DGaDavMLSgETA 350 (526)
T PLN02765 337 LDGADAILLGAETL 350 (526)
T ss_pred HhCCCEEEecchhc
Confidence 88999999987664
No 39
>PRK14725 pyruvate kinase; Provisional
Probab=98.52 E-value=4.1e-07 Score=95.56 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
.+..+++. +|.|-+.+|++++|++.+.+.+.. +| ...+.|++.|||++|++|+
T Consensus 437 dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~-----~g---------------------~~~~~IiaKIEt~~av~nL 489 (608)
T PRK14725 437 DLAFVAKH-ADIVALSFVRSPEDVRLLLDALEK-----LG---------------------ADDLGVVLKIETRRAFENL 489 (608)
T ss_pred HHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHH-----cC---------------------CCCCcEEEEECCHHHHHHH
Confidence 46667777 999999999999999999998853 11 1246799999999999999
Q ss_pred HHHhcc---CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee
Q 018508 229 EDIAAV---DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL 281 (355)
Q Consensus 229 eeIaav---pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~ 281 (355)
+||+.. -.-|+|+|..+||...+|+ ..+....++|+..|+++|++++
T Consensus 490 ~eIl~~am~~~~DGIMIARGDLgvEi~~------e~lp~iQk~Ii~~c~~~~kPVI 539 (608)
T PRK14725 490 PRILLEAMRHPRFGVMIARGDLAVEVGF------ERLAEVQEEILWLCEAAHVPVI 539 (608)
T ss_pred HHHHHhhccCCCcEEEEECCccccccCH------HHHHHHHHHHHHHHHHcCCCEE
Confidence 999963 1259999999999999886 3677788999999999998743
No 40
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=1.6e-06 Score=89.16 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..|..+++.|+|-|-+-+|.+++|++.+.+.+... ...++.+++-||+++||+|
T Consensus 179 ~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~--------------------------~~~~~~iiaKIE~~eav~N 232 (477)
T COG0469 179 EDLKFGLEQGVDFVALSFVRNAEDVEEVREILAET--------------------------GGRDVKIIAKIENQEAVDN 232 (477)
T ss_pred HHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHh--------------------------CCCCceEEEeecCHHHHhH
Confidence 46888999999999999999999999999877531 1224789999999999999
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeec------ccCC--c-----hhHHHH
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAG------FAMP--H-----DAPLEM 294 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~------~~~d--~-----~~a~~~ 294 (355)
+|||+.. -|||++-.+||...++. ++|....+++++.|+..|++++-. +-.. | .++...
T Consensus 233 ldeIi~~--SDGIMVARGDLGVEip~------e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanA 304 (477)
T COG0469 233 LDEIIEA--SDGIMVARGDLGVEIPL------EEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANA 304 (477)
T ss_pred HHHHHHh--cCceEEEecccccccCH------HHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHH
Confidence 9999974 49999999999988875 478888899999999999874321 1111 1 235566
Q ss_pred HHCCCCEEEecchHH
Q 018508 295 KSRGYHMVSGAVDVG 309 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ 309 (355)
+-.|-+.+.++..+.
T Consensus 305 vlDGtDAvMLS~ETA 319 (477)
T COG0469 305 VLDGTDAVMLSGETA 319 (477)
T ss_pred HHhCCceeeechhhh
Confidence 778888888887764
No 41
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1.4e-06 Score=94.47 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=104.7
Q ss_pred CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCcc
Q 018508 159 QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVD 238 (355)
Q Consensus 159 ~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD 238 (355)
-.+|+|++.+.++..+++ ...+ |..+ ... ..++.|||.|.++..++||+.. .|
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~~---~~~~--------------------~~~-~~~~~m~e~P~~~~~~~e~~~~--~d 648 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILEE---GLKR--------------------GKN-YKVGQMIELPSAALLADEIAEY--FD 648 (740)
T ss_pred cEEEccccccHHHHHHHH-HHhh---hhcc--------------------cce-EEEEEEeecchHHhhhHhHHhh--cc
Confidence 369999999999998888 4441 2211 123 7899999999999999999984 99
Q ss_pred EEEEChhhHHhh-cCCC-----CCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 239 CVQMGPLDLSAS-MGYL-----WDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 239 ~l~iGp~DLs~s-lG~~-----~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
++.||+|||+|- +|+. .+.++|.+...+..++..|+..++. +||....+++.+..+.+.|.+.|+.++|.++
T Consensus 649 ~~S~gtndltq~tlg~~rd~~~~~~~~~~v~~li~~a~~~~~~~~~~~~icG~~~~~p~~a~~~~e~Gi~~Vs~np~~v~ 728 (740)
T COG0574 649 GFSIGSNDLTQLTLGLDRDSELFDERDPAVLKLIIIAIKAADSGGLLVGICGQAPSDPHGAIFLVELGIDSVSLNPDSVL 728 (740)
T ss_pred cceecccccccceeeeeccccccccccccHHHHHHHHHhcccccCcEEEEeccCCCCcHHHHHHHHcCCCeEecCchhhh
Confidence 999999999995 4543 3567999999999999999988865 5777778899999999999999999999876
Q ss_pred HH
Q 018508 311 FR 312 (355)
Q Consensus 311 l~ 312 (355)
-.
T Consensus 729 ~~ 730 (740)
T COG0574 729 KA 730 (740)
T ss_pred hh
Confidence 43
No 42
>PF15617 C-C_Bond_Lyase: C-C_Bond_Lyase of the TIM-Barrel fold
Probab=98.25 E-value=0.00014 Score=72.13 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=145.8
Q ss_pred EEEEecCCHHHHHHhhh---cCCcEEEEeCCCCCC--CHHHHHHHHH----HHHh--------CCCCeEEcCCCCCHHHH
Q 018508 88 GLFLLSFSPTLAEISGL---AGYDFVVVDMEHGPG--GISDALACLH----ALAA--------TGTPAILRLPESCPTWA 150 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~---~G~D~vilDlEh~~~--~~~~a~~~i~----a~~~--------~g~~~iVRV~~~~~~~i 150 (355)
.+|+|+..+.+++.+.. .|.-.++|++||+.. +.+.|.+.+. .+.. ..--.+|||.. +.++
T Consensus 9 tLYmPAtr~dia~~i~~~k~~gl~S~ViCLEDAI~d~~v~~Ae~nL~~~L~~l~~~~~~~~~~~~PliFIRvR~--~~ql 86 (345)
T PF15617_consen 9 TLYMPATRPDIADDIIRQKYPGLRSMVICLEDAIADDEVEEAEENLVAQLDQLAEAVQSGNPDDLPLIFIRVRN--PEQL 86 (345)
T ss_pred heeCCcccchHHHHHHhccccCceeEEEEcccCCCcccHHHHHHHHHHHHHHHHHhhhccCCCCCCeEEEEeCC--HHHH
Confidence 47899999999887754 678889999999964 3455554432 2222 11236899875 6666
Q ss_pred HHHHhc---CC---CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHH
Q 018508 151 KKALDL---GP---QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEG 224 (355)
Q Consensus 151 ~~aLda---Ga---~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~a 224 (355)
.++++. +. .|+++||.+. +-.....++++... +........++.+||++-
T Consensus 87 ~~L~~~l~~~~~~ltGFVlPKf~~-~n~~~yl~~l~~~~-----------------------~~~~~~ly~MPiLEs~ev 142 (345)
T PF15617_consen 87 RRLLERLGSGIDLLTGFVLPKFTS-SNGDAYLEALQEAN-----------------------ERAGKPLYAMPILESPEV 142 (345)
T ss_pred HHHHHHhhhccceeeeeecCCCCh-hhHHHHHHHHHHHh-----------------------hhcCCceEeccccCCHHH
Confidence 665542 22 6999999954 44444444443211 011234678899999998
Q ss_pred H------HHHHHHhc-----cCCccEEEEChhhHHhhcCCCCCCCCH-----HHHHHHHHHHHHHHhC--CCceeec---
Q 018508 225 V------KRAEDIAA-----VDGVDCVQMGPLDLSASMGYLWDPGHR-----KVREMMRVAEKGVLGG--GKAYLAG--- 283 (355)
Q Consensus 225 v------~nieeIaa-----vpgVD~l~iGp~DLs~slG~~~~~~~p-----~v~~ai~~iv~aa~a~--g~~~~g~--- 283 (355)
+ ..+.+|.. -+.|=.|=||.|||+..+|+....+.. .+...+..++...... |-...|-
T Consensus 143 ~~~etr~~~L~~l~~~L~~~~~~IL~vRIGgtDl~~~~GiRR~~d~TIYdi~~v~~~I~dIVnvf~r~~~gf~iSgPVwE 222 (345)
T PF15617_consen 143 FYRETRVDELQELKELLDKYRDRILAVRIGGTDLCGLYGIRRPRDLTIYDITPVADVIADIVNVFGRAGTGFVISGPVWE 222 (345)
T ss_pred HhhcccHHHHHHHHHHHHhhhheEEEEEeehHhhhhccccCCCCCCchhhhhhHHHHHHHHHHHhCcccCCceecchHHH
Confidence 8 33333332 257888999999999999998765432 3556677777777655 3322222
Q ss_pred ccCCch--------------------------hHHHHHHCCCCE--EEecchHHHHHHHH---HHHHHHHHHhcCCCCC-
Q 018508 284 FAMPHD--------------------------APLEMKSRGYHM--VSGAVDVGLFRSAA---VEDVARFKMNLTDDAD- 331 (355)
Q Consensus 284 ~~~d~~--------------------------~a~~~~~~G~~~--vs~~~D~~ll~~~~---~~~~~~~r~~~~~~~~- 331 (355)
++.+.+ +...=+..|+-+ +.+.+.+.+.++.+ .+....++..+++++-
T Consensus 223 yf~~~~r~lr~~pf~~~~r~~l~~~~~dgL~rEv~lD~anGlvGKTvIHPsqI~~V~al~~Vs~eey~DA~~IL~~~~~g 302 (345)
T PF15617_consen 223 YFDDPERQLRQTPFEEHDRQQLVSRDLDGLIREVELDKANGLVGKTVIHPSQIPVVQALYVVSHEEYEDALDILNSDAGG 302 (345)
T ss_pred HhcchhhhhccCchhhhhhhhhhhhhHHHHHHHHHHHHhcCccccceechhhhhHHHHHhhcCHHHHHHHHHHhccCCCc
Confidence 222333 122335788875 78888888887776 4555555555555431
Q ss_pred ---C------CCCCchhHHhhhhcc
Q 018508 332 ---D------DDDDDDDAWRERIKD 347 (355)
Q Consensus 332 ---~------~~~~~~~~~~~~~~~ 347 (355)
+ -+---|-.|-++|-.
T Consensus 303 V~ks~~~nkMnE~kpH~~WA~kil~ 327 (345)
T PF15617_consen 303 VFKSHYGNKMNEPKPHRNWAEKILL 327 (345)
T ss_pred eeccCCCCcccCcchhHHHHHHHHH
Confidence 1 122338899998754
No 43
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.86 E-value=0.0027 Score=60.81 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=115.3
Q ss_pred HcCCcEEEEEEecCCHH------HHHHhhhcCCcEEEEeCCCC-C-CC-----------------HHHHHHHHHHHHhC-
Q 018508 81 QSNETLYGLFLLSFSPT------LAEISGLAGYDFVVVDMEHG-P-GG-----------------ISDALACLHALAAT- 134 (355)
Q Consensus 81 ~~G~~~~gl~v~~~sp~------~~e~aa~~G~D~vilDlEh~-~-~~-----------------~~~a~~~i~a~~~~- 134 (355)
++|++.+..|+..+.|. .++.+...|+|+|=|-.=.+ | .| .+...+++++++..
T Consensus 6 ~~~~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~ 85 (256)
T TIGR00262 6 QRGEGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH 85 (256)
T ss_pred hcCCceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 45888899998887653 35566779999999988665 2 11 12222344454432
Q ss_pred CCCeEE---cCCCC-C---HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccc
Q 018508 135 GTPAIL---RLPES-C---PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLS 207 (355)
Q Consensus 135 g~~~iV---RV~~~-~---~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~ 207 (355)
-..++| =.|.. . ...+..+.++|++||++|-. ..++..++++.++.. |
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~--g---------------------- 140 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKH--G---------------------- 140 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHC--C----------------------
Confidence 112222 11221 1 23578899999999999975 568888888888632 1
Q ss_pred cCCCceEEEEEEccHHHHHHHHHHhccCCcc-EEEEChhhHHhhcCCCCCC--CCHHHHHHHHHHHHHHHhCCCceeecc
Q 018508 208 NYEEELLIMCQVESEEGVKRAEDIAAVDGVD-CVQMGPLDLSASMGYLWDP--GHRKVREMMRVAEKGVLGGGKAYLAGF 284 (355)
Q Consensus 208 ~~n~~i~vi~mIET~~av~nieeIaavpgVD-~l~iGp~DLs~slG~~~~~--~~p~v~~ai~~iv~aa~a~g~~~~g~~ 284 (355)
+..+..|=--.-.+.+.+|++. .+ ++++.+- .|..++. ..+.+.+.++++.+.. ..+++.++
T Consensus 141 -----l~~i~lv~P~T~~eri~~i~~~--~~gfiy~vs~-----~G~TG~~~~~~~~~~~~i~~lr~~~---~~pi~vgf 205 (256)
T TIGR00262 141 -----VKPIFLVAPNADDERLKQIAEK--SQGFVYLVSR-----AGVTGARNRAASALNELVKRLKAYS---AKPVLVGF 205 (256)
T ss_pred -----CcEEEEECCCCCHHHHHHHHHh--CCCCEEEEEC-----CCCCCCcccCChhHHHHHHHHHhhc---CCCEEEeC
Confidence 1223333111235788888863 33 5555431 3666543 3566666666655432 33444444
Q ss_pred cC-CchhHHHHHHCCCCEEEecchHH
Q 018508 285 AM-PHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 285 ~~-d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
.- +++.++.+.+.|.+.+++|+-..
T Consensus 206 GI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 206 GISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 44 48999999999999999997664
No 44
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=97.71 E-value=0.00021 Score=74.73 Aligned_cols=203 Identities=16% Similarity=0.062 Sum_probs=122.4
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHH-------H--------------------hCCCCeEEcCCCCCH
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHAL-------A--------------------ATGTPAILRLPESCP 147 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~-------~--------------------~~g~~~iVRV~~~~~ 147 (355)
++..+..+..+|++..+.|+||+..- +..+++..- + ......+||..+..-
T Consensus 90 d~~~~inalnsgA~~~m~DfEDs~~p--tW~n~~~Gq~nl~~a~~g~i~~~~~~~~k~y~~~~~~~~~~~l~vRprG~hl 167 (526)
T PF01274_consen 90 DRKMVINALNSGAKVFMADFEDSVAP--TWLNLIEGQLNLYDAVRGKISFRDPNSGKEYTLNDGLPGRATLIVRPRGWHL 167 (526)
T ss_dssp STTHEEEEEEESSSEEEEESSTTS----HHHHHHHCHHCEECCCTTEEEEEET-TSEEEEETTSESSSSEEEEE---SST
T ss_pred cHHHHHHHHhCCCceEEeccccccCC--cHHHHhccchhhHhhcCCceeeecCCCCceEeccCCCCCCceeeeecCCCCC
Confidence 34455556788999999999999532 444444311 0 011235888776521
Q ss_pred -------------H-----------HHHHH-HhcCC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCC
Q 018508 148 -------------T-----------WAKKA-LDLGP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGI 201 (355)
Q Consensus 148 -------------~-----------~i~~a-LdaGa-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~ 201 (355)
. ..+.. ++.|- --+.+||+++++|++--.+...+.
T Consensus 168 ~e~hi~vdG~pv~~~l~Dfgl~~fhn~~~l~~~~g~gpYfylPKme~~~EA~lwn~vF~~~------------------- 228 (526)
T PF01274_consen 168 TEDHILVDGEPVPGSLFDFGLYFFHNAKRLRNSRGSGPYFYLPKMESHEEARLWNDVFSFA------------------- 228 (526)
T ss_dssp EEEEEEETSEEEEHHHHHHHHHHHHHHHHHSSHTTSSEEEEE-S-SSHHHHHHHHHHHHHH-------------------
T ss_pred CccceeECCcCCchHHHHHHHHHHhhhHHHhhcCCCCeEEEeCCCCCHHHHHHHHHHHHHH-------------------
Confidence 1 12334 44444 368999999999998655554432
Q ss_pred CccccccCCCceEEEEEEccHHHHHHHHHHhc--cCCccEEEEChhhHHhhc----CCCC----------CCCCHHHHHH
Q 018508 202 DEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--VDGVDCVQMGPLDLSASM----GYLW----------DPGHRKVREM 265 (355)
Q Consensus 202 ~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--vpgVD~l~iGp~DLs~sl----G~~~----------~~~~p~v~~a 265 (355)
.+++.-..+.+.+.+||||..|.-+++||.- -+++-|+-.|.=|+..|+ +..+ ....|-+..-
T Consensus 229 -E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~~~~~~~~vlPdR~~v~m~~pfm~aY 307 (526)
T PF01274_consen 229 -EDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKTFRNRPDFVLPDRKQVTMTQPFMRAY 307 (526)
T ss_dssp -HHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHHTCCGCCBB---GGGGGCGSHHHHHH
T ss_pred -HHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHHhhhCCCccccccccccccCHHHHHH
Confidence 1222233567999999999999999999993 378999999999999874 2211 1346667777
Q ss_pred HHHHHHHHHhCCCceeecccCC------c----hhH-------HHHHHCCCCEE-EecchHH-HHHHHHHHHH
Q 018508 266 MRVAEKGVLGGGKAYLAGFAMP------H----DAP-------LEMKSRGYHMV-SGAVDVG-LFRSAAVEDV 319 (355)
Q Consensus 266 i~~iv~aa~a~g~~~~g~~~~d------~----~~a-------~~~~~~G~~~v-s~~~D~~-ll~~~~~~~~ 319 (355)
.+..+..|+++|....||+..- + +.. .+=...|+++- +..++.+ +-+..+.+..
T Consensus 308 ~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg~WVahP~lv~~~~~~f~~~~ 380 (526)
T PF01274_consen 308 EDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDGAWVAHPGLVPLAREHFHKVM 380 (526)
T ss_dssp HHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SEEEESSHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCcccccChhHHHHHHHHHHHHC
Confidence 7889999999998777776542 1 111 12247999974 4445544 3445554433
No 45
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.65 E-value=0.0023 Score=58.10 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=105.8
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCC--CHHHHHHHHHHHHh-CCCC--eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCH
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPG--GISDALACLHALAA-TGTP--AILRLPESCPTWAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~--~~~~a~~~i~a~~~-~g~~--~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesa 169 (355)
..+.++.+...|+|.|=+|+.|+++ +...--+.++++.. ...+ +.|.+.+. ...+..+.+.|++||.+|--.+
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~-~~~~~~~~~~gadgv~vh~~~~- 90 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP-DRYIEDFAEAGADIITVHPEAS- 90 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEEccCCc-
Confidence 3456788889999999999888854 21222233444432 2333 23555543 2457778899999999976544
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 170 EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 170 eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
++....++.++.. | +.++..++.....+.+.++.. ++|.+.+++-+-
T Consensus 91 ~~~~~~~~~~~~~--g---------------------------~~~~~~~~~~t~~e~~~~~~~--~~d~i~~~~~~~-- 137 (210)
T TIGR01163 91 EHIHRLLQLIKDL--G---------------------------AKAGIVLNPATPLEFLEYVLP--DVDLVLLMSVNP-- 137 (210)
T ss_pred hhHHHHHHHHHHc--C---------------------------CcEEEEECCCCCHHHHHHHHh--hCCEEEEEEEcC--
Confidence 5555555555421 0 122334443334667777765 578888887532
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCC--Cce--eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGG--KAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g--~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
|..++...+...+.++++.+...+.+ .++ .||+ +++.++.+++.|.+.+++|+-+
T Consensus 138 --g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI--~~env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 138 --GFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV--NDDNARELAEAGADILVAGSAI 196 (210)
T ss_pred --CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc--CHHHHHHHHHcCCCEEEEChHH
Confidence 54444334555566666655544332 222 2444 5688889899999999999654
No 46
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.55 E-value=0.0036 Score=57.43 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=103.0
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHh-CCCC--eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAA-TGTP--AILRLPESCPTWAKKALDLGPQGVMFPMIDSPEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~-~g~~--~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaee 171 (355)
+.++.+...|+|+|=+|..|+++. ..-..+.++.+.. ...+ +.+-+++.. ..+..+.++|++||.+|--.+ ++
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~-~~i~~~~~~g~d~v~vh~~~~-~~ 97 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPD-RYVPDFAKAGADIITFHVEAS-EH 97 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHH-HHHHHHHHcCCCEEEEeeccc-hh
Confidence 457788899999999999888542 1111222333321 2222 346666532 246677799999999998765 44
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl 251 (355)
.....+.++-. ...++..+......+.+.++.. ++|.+.+++-+-
T Consensus 98 ~~~~~~~~~~~-----------------------------~~~~g~~~~~~t~~e~~~~~~~--~~d~i~~~~~~~---- 142 (220)
T PRK05581 98 IHRLLQLIKSA-----------------------------GIKAGLVLNPATPLEPLEDVLD--LLDLVLLMSVNP---- 142 (220)
T ss_pred HHHHHHHHHHc-----------------------------CCEEEEEECCCCCHHHHHHHHh--hCCEEEEEEECC----
Confidence 44555544311 1345555632223566677764 478888877432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCC--ce-eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 252 GYLWDPGHRKVREMMRVAEKGVLGGGK--AY-LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 252 G~~~~~~~p~v~~ai~~iv~aa~a~g~--~~-~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
|..++...+...+.+.++......++. .+ ++| .-+++.++.+.+.|.+.+++|+-..
T Consensus 143 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G-GI~~~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 143 GFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG-GINADNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CCCHHHHHHHHHcCCCEEEEChhhh
Confidence 555554445555656555444433222 12 222 3355788888899999999997643
No 47
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.00023 Score=73.47 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=95.5
Q ss_pred HHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 150 AKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 150 i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
++...+.++|-|.+++|..+++++++.+.+. .+ ..++.++.+||..+|+.|+|
T Consensus 200 l~fGven~vd~i~~SfIR~a~dv~~iR~~Lg-----~~----------------------g~~ikiisKIEn~~g~~nfD 252 (501)
T KOG2323|consen 200 LKFGVENKVDMIFASFIRKASDVREVRKVLG-----ES----------------------GKNIKLISKIENQEGVSNFD 252 (501)
T ss_pred HhcCCCCCCCEEEeeeeeehHHHHHHHHHhC-----cc----------------------CCcceEEEEechhhhhccHH
Confidence 4555666778999999999999999999875 12 24689999999999999999
Q ss_pred HHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC--------Cc-----hhHHHHHH
Q 018508 230 DIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM--------PH-----DAPLEMKS 296 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~--------d~-----~~a~~~~~ 296 (355)
||.. .-|++++-.+||...+.. +++.-+.+.++..|...|++.+...-. .| .++...+-
T Consensus 253 eIl~--~sDg~MvarGdlGieip~------e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVL 324 (501)
T KOG2323|consen 253 EILI--ESDGIMVARGDLGIEIPA------EKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVL 324 (501)
T ss_pred HHHH--hcCceEEEeCCCCcccCH------HHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHh
Confidence 9997 358999999999755433 577778888999999999985432100 12 34556677
Q ss_pred CCCCEEEecchH
Q 018508 297 RGYHMVSGAVDV 308 (355)
Q Consensus 297 ~G~~~vs~~~D~ 308 (355)
.|.+-+.++..+
T Consensus 325 dg~D~vmLsgEt 336 (501)
T KOG2323|consen 325 DGADCVMLSGET 336 (501)
T ss_pred ccCceEEeccch
Confidence 899988877554
No 48
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.50 E-value=0.007 Score=54.83 Aligned_cols=176 Identities=13% Similarity=0.044 Sum_probs=101.5
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHH-H-HHHHHHHHh-CCCC--eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISD-A-LACLHALAA-TGTP--AILRLPESCPTWAKKALDLGPQGVMFPMIDSPEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~-a-~~~i~a~~~-~g~~--~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaee 171 (355)
+.++.+...|+|+|=||.-++++.... . .+.++.++. .+.+ +.+-+++. ...+..+.++|++||.+|--.+ ++
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~-~~~~~~~~~~g~dgv~vh~~~~-~~ 93 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENP-ERYIEAFAKAGADIITFHAEAT-DH 93 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCH-HHHHHHHHHcCCCEEEECccch-hh
Confidence 457888899999999998887432111 0 122332221 1222 33556643 3357788899999999998766 44
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl 251 (355)
....++.++.. .+.++..+.+....+.+.++.. .+|.+.+|+.+.
T Consensus 94 ~~~~~~~~~~~-----------------------------~~~~g~~~~~~~~~~~~~~~~~--~~d~i~~~~~~~---- 138 (211)
T cd00429 94 LHRTIQLIKEL-----------------------------GMKAGVALNPGTPVEVLEPYLD--EVDLVLVMSVNP---- 138 (211)
T ss_pred HHHHHHHHHHC-----------------------------CCeEEEEecCCCCHHHHHHHHh--hCCEEEEEEECC----
Confidence 44555544321 1345555543223566677654 478998887532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHh--CCCceeecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 252 GYLWDPGHRKVREMMRVAEKGVLG--GGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 252 G~~~~~~~p~v~~ai~~iv~aa~a--~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
|..++...+...+.++++.+...+ ...+++..-.-+++.+..+++.|.+.+++|+-..
T Consensus 139 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 139 GFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 444433334444555544333321 1233311113356888999999999999997653
No 49
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.48 E-value=0.049 Score=52.47 Aligned_cols=189 Identities=13% Similarity=0.197 Sum_probs=112.3
Q ss_pred cCCcEEEEEEecCCHH------HHHHhhhcCCcEEEEeCCCC-C-CCHHHHH-----------------HHHHHHHhC-C
Q 018508 82 SNETLYGLFLLSFSPT------LAEISGLAGYDFVVVDMEHG-P-GGISDAL-----------------ACLHALAAT-G 135 (355)
Q Consensus 82 ~G~~~~gl~v~~~sp~------~~e~aa~~G~D~vilDlEh~-~-~~~~~a~-----------------~~i~a~~~~-g 135 (355)
+|+..+..|+.++.|. .+..+...|+|.|=|-.=.+ | .|=+..+ +++..++.. .
T Consensus 12 ~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~ 91 (263)
T CHL00200 12 DKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIK 91 (263)
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC
Confidence 4788888888877553 34556779999999888776 2 2211111 122222221 2
Q ss_pred CCeEEcC--CCC---C-HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccC
Q 018508 136 TPAILRL--PES---C-PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNY 209 (355)
Q Consensus 136 ~~~iVRV--~~~---~-~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~ 209 (355)
.+.++-. |.. . ...++.+.++|++||++|-. ..|+...+.+.|+..
T Consensus 92 ~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~--------------------------- 143 (263)
T CHL00200 92 APIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL-PYEESDYLISVCNLY--------------------------- 143 (263)
T ss_pred CCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHc---------------------------
Confidence 2222221 111 1 12478899999999999996 568888888888632
Q ss_pred CCceEEEEEEccHHHHHHHHHHhccCCcc-EEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhC-CCceeecccCC
Q 018508 210 EEELLIMCQVESEEGVKRAEDIAAVDGVD-CVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGG-GKAYLAGFAMP 287 (355)
Q Consensus 210 n~~i~vi~mIET~~av~nieeIaavpgVD-~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~-g~~~~g~~~~d 287 (355)
.+..+.+|=-..-.+.+..|++. .+ +|++=+ ..|..|+.. .+..-+.+.++..|++ ..+++.++.-.
T Consensus 144 --gi~~I~lv~PtT~~eri~~i~~~--a~gFIY~vS-----~~GvTG~~~--~~~~~~~~~i~~ir~~t~~Pi~vGFGI~ 212 (263)
T CHL00200 144 --NIELILLIAPTSSKSRIQKIARA--APGCIYLVS-----TTGVTGLKT--ELDKKLKKLIETIKKMTNKPIILGFGIS 212 (263)
T ss_pred --CCCEEEEECCCCCHHHHHHHHHh--CCCcEEEEc-----CCCCCCCCc--cccHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 12334444222236788888863 23 555411 356666531 2222233444444443 44555566554
Q ss_pred -chhHHHHHHCCCCEEEecchHH
Q 018508 288 -HDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 288 -~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
+++++.+.+.|.+++++|+=..
T Consensus 213 ~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 213 TSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred CHHHHHHHHhcCCCEEEECHHHH
Confidence 8999999999999999998764
No 50
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.47 E-value=0.0018 Score=60.81 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=115.6
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhC--CCCeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCCHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAAT--GTPAILRLPESCPT-WAKKALDLGPQGVMFPMIDSPEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~--g~~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Vesaee 171 (355)
+.++.+...|+|++=+|..|+-+- ..-=...+++++.. ..+.-|-+-..++. .+..+.++|++-|.| |.++..+
T Consensus 23 ~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itv-H~ea~~~ 101 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTF-HIEATED 101 (228)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEE-eccCCch
Confidence 345777788999999999999432 11112345555432 33333333333343 577888999997766 5565455
Q ss_pred -HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhh
Q 018508 172 -AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSAS 250 (355)
Q Consensus 172 -a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~s 250 (355)
+.++++.++.. | ..+++-+-+..-++.+++++..+.+|.|.+ ++..
T Consensus 102 ~~~~~l~~ik~~--G---------------------------~~~gval~p~t~~e~l~~~l~~~~vD~Vl~----m~v~ 148 (228)
T PTZ00170 102 DPKAVARKIREA--G---------------------------MKVGVAIKPKTPVEVLFPLIDTDLVDMVLV----MTVE 148 (228)
T ss_pred HHHHHHHHHHHC--C---------------------------CeEEEEECCCCCHHHHHHHHccchhhhHHh----hhcc
Confidence 77888877632 1 123344444446888889986677888875 7777
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchHHHHHHHHHHHHHHHHH
Q 018508 251 MGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRSAAVEDVARFKM 324 (355)
Q Consensus 251 lG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~~~~~~~~r~ 324 (355)
-|..++...|....-+.++.+......+.+.||+ +.+.++.+.+.|.+.+++|+-+. -..-.++.+..++.
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI--~~~ti~~~~~aGad~iVvGsaI~-~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI--NLETIDIAADAGANVIVAGSSIF-KAKDRKQAIELLRE 219 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC--CHHHHHHHHHcCCCEEEEchHHh-CCCCHHHHHHHHHH
Confidence 7887777666665555554332211111122333 45778889999999999996532 12223444555554
No 51
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.24 E-value=0.14 Score=49.91 Aligned_cols=207 Identities=17% Similarity=0.215 Sum_probs=119.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCC-CCCCHHHHHHHHHHH-HhCCCCeEEcC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEH-GPGGISDALACLHAL-AATGTPAILRL 142 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh-~~~~~~~a~~~i~a~-~~~g~~~iVRV 142 (355)
..||+.++++++++ ..+.-++-.+..+..+||+.+++= +.| +..+.++..+.++.+ +....|++|=+
T Consensus 3 ~~lr~l~~~~~~l~--~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 3 KAFRAALAKEDILQ--IPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred HHHHHHHhCCCcEE--eCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 57999999988753 234568888888888999998752 233 124556665555543 34567777766
Q ss_pred CCC--CHH----HHHHHHhcCCCeEee-----cC---------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCC
Q 018508 143 PES--CPT----WAKKALDLGPQGVMF-----PM---------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGID 202 (355)
Q Consensus 143 ~~~--~~~----~i~~aLdaGa~GImv-----P~---------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~ 202 (355)
-.. ++. .+++..++|+.||.+ || +-+.++...-+++++.. |
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a----~--------------- 141 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDA----K--------------- 141 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHh----c---------------
Confidence 443 232 367888999988877 21 22344433333333321 0
Q ss_pred ccccccCCCceEEEEEEccH------HHHHHHHHHhccCCccEEEE-ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHh
Q 018508 203 EGYLSNYEEELLIMCQVESE------EGVKRAEDIAAVDGVDCVQM-GPLDLSASMGYLWDPGHRKVREMMRVAEKGVLG 275 (355)
Q Consensus 203 ~~y~~~~n~~i~vi~mIET~------~av~nieeIaavpgVD~l~i-Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a 275 (355)
.+.++.|++=.+.. ++++.+...++. |-|+||+ |+. .+ +.++++.+..
T Consensus 142 ------~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~A-GAD~vfi~g~~-------------~~---e~i~~~~~~i-- 196 (285)
T TIGR02317 142 ------RDEDFVIIARTDARAVEGLDAAIERAKAYVEA-GADMIFPEALT-------------SL---EEFRQFAKAV-- 196 (285)
T ss_pred ------cCCCEEEEEEcCcccccCHHHHHHHHHHHHHc-CCCEEEeCCCC-------------CH---HHHHHHHHhc--
Confidence 01235555555543 677777776653 8999998 221 11 2233343333
Q ss_pred CCCceeeccc--C-Cc-hhHHHHHHCCCCEEEecchHH-HHHHHHHHHHHHHHHhcC
Q 018508 276 GGKAYLAGFA--M-PH-DAPLEMKSRGYHMVSGAVDVG-LFRSAAVEDVARFKMNLT 327 (355)
Q Consensus 276 ~g~~~~g~~~--~-d~-~~a~~~~~~G~~~vs~~~D~~-ll~~~~~~~~~~~r~~~~ 327 (355)
.++....+. + ++ -..+++.++||+.++++.-.. -...++++.+..++....
T Consensus 197 -~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~ 252 (285)
T TIGR02317 197 -KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRAMNKAAEAVYNEIKEHGT 252 (285)
T ss_pred -CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHHHHHHHHHHHHHHHHcCC
Confidence 234322221 1 22 357889999999999996652 233444455555554433
No 52
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.20 E-value=0.22 Score=48.74 Aligned_cols=205 Identities=17% Similarity=0.199 Sum_probs=118.4
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeC------CCC-----CCCHHHHHHHHHHH-HhCCCCeEEc
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDM------EHG-----PGGISDALACLHAL-AATGTPAILR 141 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDl------Eh~-----~~~~~~a~~~i~a~-~~~g~~~iVR 141 (355)
..||+.++++++++ ..+.-++-.+..+..+||+.+++=- -++ ..+.++..+.++.+ +....|++|=
T Consensus 7 ~~lr~ll~~~~~l~--~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD 84 (292)
T PRK11320 7 ARFRAALAAEKPLQ--IVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVD 84 (292)
T ss_pred HHHHHHHcCCCcEE--ecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 56999999988754 3345688888888899999986521 122 23455655555544 3456777776
Q ss_pred CCCC--CHH----HHHHHHhcCCCeEee-----cC---------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCC
Q 018508 142 LPES--CPT----WAKKALDLGPQGVMF-----PM---------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGI 201 (355)
Q Consensus 142 V~~~--~~~----~i~~aLdaGa~GImv-----P~---------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~ 201 (355)
+... ++. .+++..++|+.||.+ || +-+.++...-+++++.. .+
T Consensus 85 ~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a---~~-------------- 147 (292)
T PRK11320 85 IDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA---RT-------------- 147 (292)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh---cc--------------
Confidence 6543 333 367788999988877 11 22344443333333321 00
Q ss_pred CccccccCCCceEEEEEEcc------HHHHHHHHHHhccCCccEEEE-ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHH
Q 018508 202 DEGYLSNYEEELLIMCQVES------EEGVKRAEDIAAVDGVDCVQM-GPLDLSASMGYLWDPGHRKVREMMRVAEKGVL 274 (355)
Q Consensus 202 ~~~y~~~~n~~i~vi~mIET------~~av~nieeIaavpgVD~l~i-Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~ 274 (355)
+.++.|++=.+. -+++++...-++ -|-|+||+ |+.| + +.++++.+..
T Consensus 148 --------~~d~~IiARTDa~~~~g~deAI~Ra~aY~e-AGAD~ifi~~~~~-------------~---~~i~~~~~~~- 201 (292)
T PRK11320 148 --------DPDFVIMARTDALAVEGLDAAIERAQAYVE-AGADMIFPEAMTE-------------L---EMYRRFADAV- 201 (292)
T ss_pred --------CCCeEEEEecCcccccCHHHHHHHHHHHHH-cCCCEEEecCCCC-------------H---HHHHHHHHhc-
Confidence 123455555554 367777777665 38999998 2221 1 2233333332
Q ss_pred hCCCceeeccc--C-Cc-hhHHHHHHCCCCEEEecchHH-HHHHHHHHHHHHHHHh
Q 018508 275 GGGKAYLAGFA--M-PH-DAPLEMKSRGYHMVSGAVDVG-LFRSAAVEDVARFKMN 325 (355)
Q Consensus 275 a~g~~~~g~~~--~-d~-~~a~~~~~~G~~~vs~~~D~~-ll~~~~~~~~~~~r~~ 325 (355)
.++....+. + ++ -..+.+.++||+.++++.-.. .+..++++.+..++..
T Consensus 202 --~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~ 255 (292)
T PRK11320 202 --KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAENVYEAIRRD 255 (292)
T ss_pred --CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHHHHHHHHHHc
Confidence 334322221 1 12 357889999999999998652 2344444555555543
No 53
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.18 E-value=0.2 Score=49.07 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=119.7
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe------CCCC-----CCCHHHHHHHHHHH-HhCCCCeEE
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD------MEHG-----PGGISDALACLHAL-AATGTPAIL 140 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD------lEh~-----~~~~~~a~~~i~a~-~~~g~~~iV 140 (355)
...||+.++++++++ ..+.-++-.+..+..+||+.+++- .-+| ..+.++....++.+ +....|++|
T Consensus 5 ~~~~r~l~~~~~~l~--~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 82 (294)
T TIGR02319 5 ARTFRELMNAPEILV--VPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIM 82 (294)
T ss_pred HHHHHHHhcCCCcEE--eecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 357999999988753 334568888888999999999873 1122 23455555555443 345677777
Q ss_pred cCCCC--CH----HHHHHHHhcCCCeEee-----cC---------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC
Q 018508 141 RLPES--CP----TWAKKALDLGPQGVMF-----PM---------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG 200 (355)
Q Consensus 141 RV~~~--~~----~~i~~aLdaGa~GImv-----P~---------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g 200 (355)
=+-.. ++ ..+++..++|+.||.+ || +-+.++..+=+++++.. |
T Consensus 83 D~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A----~------------- 145 (294)
T TIGR02319 83 DADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEA----R------------- 145 (294)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHh----c-------------
Confidence 66443 22 2368888999998877 42 22344433333333221 0
Q ss_pred CCccccccCCCceEEEEEEccH------HHHHHHHHHhccCCccEEEEC-hhhHHhhcCCCCCCCCHHHHHHHHHHHHHH
Q 018508 201 IDEGYLSNYEEELLIMCQVESE------EGVKRAEDIAAVDGVDCVQMG-PLDLSASMGYLWDPGHRKVREMMRVAEKGV 273 (355)
Q Consensus 201 ~~~~y~~~~n~~i~vi~mIET~------~av~nieeIaavpgVD~l~iG-p~DLs~slG~~~~~~~p~v~~ai~~iv~aa 273 (355)
.+.++.|++=.|.. ++++.+..-++ -|-|+||+- +.| + +.++++.+..
T Consensus 146 --------~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e-AGAD~ifi~~~~~-------------~---~ei~~~~~~~ 200 (294)
T TIGR02319 146 --------EDEDFTIIARTDARESFGLDEAIRRSREYVA-AGADCIFLEAMLD-------------V---EEMKRVRDEI 200 (294)
T ss_pred --------cCCCeEEEEEecccccCCHHHHHHHHHHHHH-hCCCEEEecCCCC-------------H---HHHHHHHHhc
Confidence 01234555555543 56777776664 389999983 222 1 2233343332
Q ss_pred HhCCCceeecc-c--CCc-hhHHHHHHCCCCEEEecchHH-HHHHHHHHHHHHHHHhc
Q 018508 274 LGGGKAYLAGF-A--MPH-DAPLEMKSRGYHMVSGAVDVG-LFRSAAVEDVARFKMNL 326 (355)
Q Consensus 274 ~a~g~~~~g~~-~--~d~-~~a~~~~~~G~~~vs~~~D~~-ll~~~~~~~~~~~r~~~ 326 (355)
.++....+ . ..+ -..+.+.++||+.++++.-.. ....++++.+..++...
T Consensus 201 ---~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 201 ---DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred ---CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 22321111 1 122 357889999999999997663 34455556666666443
No 54
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.16 E-value=0.25 Score=48.21 Aligned_cols=206 Identities=17% Similarity=0.119 Sum_probs=115.1
Q ss_pred HHHHHHcCCcEEEEEEecCCHHHHHHhhhc---------CCcEEEEe---------CCCC-CCCHHHHHHHHHHH-HhCC
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLA---------GYDFVVVD---------MEHG-PGGISDALACLHAL-AATG 135 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~---------G~D~vilD---------lEh~-~~~~~~a~~~i~a~-~~~g 135 (355)
||+.|.++++++ ..+.-+.-.+.++..+ ||+.+++= +.|. ..+.++....++.+ ....
T Consensus 1 lr~~l~~~~~l~--~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~ 78 (285)
T TIGR02320 1 LRQLLHSKPLER--LMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTT 78 (285)
T ss_pred ChHHhcCCCCEE--EecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcC
Confidence 578888877654 2334577777777788 99998862 1111 13345554444433 3456
Q ss_pred CCeEEcCCCC-CHH----HHHHHHhcCCCeEee-----cC------------CCCHHHHHHHHHHcCCCCCCCCCCcccc
Q 018508 136 TPAILRLPES-CPT----WAKKALDLGPQGVMF-----PM------------IDSPEAAKEAVSYCRFPPSGVRGSAHTV 193 (355)
Q Consensus 136 ~~~iVRV~~~-~~~----~i~~aLdaGa~GImv-----P~------------Vesaeea~~vv~a~~~pP~G~Rg~g~~~ 193 (355)
.|++|=.... ++. .+++..++|+.||.+ |+ +-+.++..+.+++++.. |
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a----~------ 148 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA----Q------ 148 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh----c------
Confidence 6766666444 232 367788999999999 43 34566665555555432 0
Q ss_pred cccccCCCCccccccCCCceEEEEEEc-------cHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHH
Q 018508 194 VRASGYGIDEGYLSNYEEELLIMCQVE-------SEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMM 266 (355)
Q Consensus 194 ~ra~~~g~~~~y~~~~n~~i~vi~mIE-------T~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai 266 (355)
.+.++.|++=.| ..++++.+...++. |.|+||+= +.. ....+ +
T Consensus 149 ---------------~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eA-GAD~ifv~--------~~~--~~~~e----i 198 (285)
T TIGR02320 149 ---------------TTEDFMIIARVESLILGKGMEDALKRAEAYAEA-GADGIMIH--------SRK--KDPDE----I 198 (285)
T ss_pred ---------------cCCCeEEEEecccccccCCHHHHHHHHHHHHHc-CCCEEEec--------CCC--CCHHH----H
Confidence 012344444433 44778887777753 89999984 111 11122 3
Q ss_pred HHHHHHHHhC--CCceeecccC-CchhHHHHHHCCCCEEEecchHHHHHHHHHHHHHHHHHh
Q 018508 267 RVAEKGVLGG--GKAYLAGFAM-PHDAPLEMKSRGYHMVSGAVDVGLFRSAAVEDVARFKMN 325 (355)
Q Consensus 267 ~~iv~aa~a~--g~~~~g~~~~-d~~~a~~~~~~G~~~vs~~~D~~ll~~~~~~~~~~~r~~ 325 (355)
.++.+..... .++.+..... .......+.++||+.++++.-. ++.+++...+.++..
T Consensus 199 ~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~--~~aa~~a~~~~~~~~ 258 (285)
T TIGR02320 199 LEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHL--LRAAYAAMQQVAERI 258 (285)
T ss_pred HHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHH--HHHHHHHHHHHHHHH
Confidence 3333443321 1232211211 1235788999999999998765 444444444444443
No 55
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=97.10 E-value=0.0089 Score=62.26 Aligned_cols=182 Identities=14% Similarity=0.050 Sum_probs=118.2
Q ss_pred cCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--CCC-H--HHHHHHHHH-HH--------hCCC-----------
Q 018508 82 SNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--PGG-I--SDALACLHA-LA--------ATGT----------- 136 (355)
Q Consensus 82 ~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--~~~-~--~~a~~~i~a-~~--------~~g~----------- 136 (355)
.|.-++| +..+...+.-+...+++..+.|.||+ |.. . -..+..+.. ++ ..|.
T Consensus 95 Rg~eItg---p~~d~~~i~naln~~a~~~m~DfEDS~ap~w~~~~v~g~~N~~~~~~G~l~~~~~k~GK~y~~~~n~dr~ 171 (545)
T COG2225 95 RGVEITG---PAVDRKMVINALNEGAKTTMMDFEDSVAPVWAKDKVLGQRNLLGLMRGELSAANQKAGKQYKLKLNPDRR 171 (545)
T ss_pred CCceeee---ccccHHHHHHHhccccceEeeccccccccccccchhhhhhhHHHHhccccccccccccceeecccCcccc
Confidence 3444444 33677788888899999999999997 322 1 122222221 11 1111
Q ss_pred -CeEEcCCCCC-------------HHHH-----------HHHHhcCC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCc
Q 018508 137 -PAILRLPESC-------------PTWA-----------KKALDLGP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSA 190 (355)
Q Consensus 137 -~~iVRV~~~~-------------~~~i-----------~~aLdaGa-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g 190 (355)
..+||++++. |..| ..++..|- --+.+||.++++|++-.-+...+.+
T Consensus 172 ~~L~vR~~G~hm~e~~i~~DG~~vp~~i~d~~l~~~~n~~~l~~rg~g~YfylPKm~~p~Ea~f~ndvf~rvE------- 244 (545)
T COG2225 172 SLLFVRNRGLHMTEPHITVDGEEVPEGIFDFVLYGLHNAHDLLARGGGPYFYLPKMEGPEEAAFWNDVFSRVE------- 244 (545)
T ss_pred ceeEEeccccccccceEEecCccCcHHHHHHHHHHHHhhhhhhhccCceEEEecCCCCHHHHHHHHHHHHHHH-------
Confidence 3689988752 1111 11222222 3589999999999987666654321
Q ss_pred ccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc--cCCccEEEEChhhHHhhcC--------CCC----C
Q 018508 191 HTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--VDGVDCVQMGPLDLSASMG--------YLW----D 256 (355)
Q Consensus 191 ~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--vpgVD~l~iGp~DLs~slG--------~~~----~ 256 (355)
+++.-..+.+.+.+||||..+.-|+++|.. -+++-++-.|.-|+..|+- .+- .
T Consensus 245 -------------d~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~~~~~~p~R~~~t 311 (545)
T COG2225 245 -------------DTLGLPRGTIKATLLIEERRATLNLDEILYALRDRVVGLNTGRWDYIGSEIKTLMEDAVPPDRKGVT 311 (545)
T ss_pred -------------HHcCCCCCceeEeeehhhhhhhhhHHHHHHHHHhhhccccccchhhhhhHHHHhhhhcCCCChhhhh
Confidence 222233567899999999999999999984 3789999999999988752 111 1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCceeecccC
Q 018508 257 PGHRKVREMMRVAEKGVLGGGKAYLAGFAM 286 (355)
Q Consensus 257 ~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~ 286 (355)
..+|-+..--...+..|+++|..+.|+++.
T Consensus 312 m~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa 341 (545)
T COG2225 312 MTSPWMGAYEKLNVDTCHKRGAFAMGGMAA 341 (545)
T ss_pred hcCHHHHHHHHHhHHHHHhcCCcccccchh
Confidence 246666655667889999999866666543
No 56
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.04 E-value=0.14 Score=48.51 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=110.6
Q ss_pred HHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeC---------CCC-CCCHHHHHHHHHHHH-hCCCCeEEcCCC
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDM---------EHG-PGGISDALACLHALA-ATGTPAILRLPE 144 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDl---------Eh~-~~~~~~a~~~i~a~~-~~g~~~iVRV~~ 144 (355)
||++++.|++++. .+.-++-.+..+..+|||.+++-- .|. ..+.++....++.+. ....++++=.+.
T Consensus 1 ~r~l~~~~~~i~~--~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~ 78 (243)
T cd00377 1 LRALLESGGPLVL--PGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADT 78 (243)
T ss_pred ChhHHhCCCcEEe--cCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCC
Confidence 5788888887553 345678888888888999998731 221 234566666555543 345565555544
Q ss_pred C--CHH----HHHHHHhcCCCeEee-----cC---------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCcc
Q 018508 145 S--CPT----WAKKALDLGPQGVMF-----PM---------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEG 204 (355)
Q Consensus 145 ~--~~~----~i~~aLdaGa~GImv-----P~---------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~ 204 (355)
. +.. .++++.++|+.||.+ |+ +-+.|+..+.+++++..-.+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~------------------- 139 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD------------------- 139 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-------------------
Confidence 2 222 356778899999999 22 33666666666655532100
Q ss_pred ccccCCCceEEEEEEcc--------HHHHHHHHHHhccCCccEEEE-ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHh
Q 018508 205 YLSNYEEELLIMCQVES--------EEGVKRAEDIAAVDGVDCVQM-GPLDLSASMGYLWDPGHRKVREMMRVAEKGVLG 275 (355)
Q Consensus 205 y~~~~n~~i~vi~mIET--------~~av~nieeIaavpgVD~l~i-Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a 275 (355)
. .++.|++=.++ .++++.+..-++. |-|++|+ |+.| + +-+.++.+ +
T Consensus 140 ----~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~A-GAD~v~v~~~~~-------------~---~~~~~~~~---~ 194 (243)
T cd00377 140 ----L-PDFVIIARTDALLAGEEGLDEAIERAKAYAEA-GADGIFVEGLKD-------------P---EEIRAFAE---A 194 (243)
T ss_pred ----c-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHc-CCCEEEeCCCCC-------------H---HHHHHHHh---c
Confidence 0 24556666333 3566777666653 8999998 4431 1 22233333 3
Q ss_pred CCCceeecccCCc--hhHHHHHHCCCCEEEecchH
Q 018508 276 GGKAYLAGFAMPH--DAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 276 ~g~~~~g~~~~d~--~~a~~~~~~G~~~vs~~~D~ 308 (355)
...+..-...... -....+.++||+.++++.-.
T Consensus 195 ~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~ 229 (243)
T cd00377 195 PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLAL 229 (243)
T ss_pred CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHH
Confidence 3444332222223 45788999999999999753
No 57
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.02 E-value=0.21 Score=48.04 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=111.7
Q ss_pred HHHHHHcCCcEEEEEEecCCHH------HHHHhhhcCCcEEEEeCCCC-C-CCHHH-----------------HHHHHHH
Q 018508 76 LKYRLQSNETLYGLFLLSFSPT------LAEISGLAGYDFVVVDMEHG-P-GGISD-----------------ALACLHA 130 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~------~~e~aa~~G~D~vilDlEh~-~-~~~~~-----------------a~~~i~a 130 (355)
+++.-+++++.+..|+.++.|. .+..+...|+|+|=|-.=.+ | .|=+. .-++++.
T Consensus 3 ~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 3 FAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred hHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444456888899998886542 34556679999998887766 2 22111 1122333
Q ss_pred HH-h-CCCCeEEcC--CCC---C-HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCC
Q 018508 131 LA-A-TGTPAILRL--PES---C-PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGID 202 (355)
Q Consensus 131 ~~-~-~g~~~iVRV--~~~---~-~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~ 202 (355)
++ . ...+.++-. |.. . ...+..+.++|++|+++|-. ..|+++.+++.++.. |
T Consensus 83 ~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~-----------------g-- 142 (258)
T PRK13111 83 IREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKH-----------------G-- 142 (258)
T ss_pred HHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHc-----------------C--
Confidence 33 1 123333333 321 1 12478889999999999987 468999999888631 1
Q ss_pred ccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCC--CCCHHHHHHHHHHHHHHHhCCCce
Q 018508 203 EGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWD--PGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 203 ~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~--~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
+..+.+|=.-.--+.+..|++.. -++|++ ...+|..+. ...+.+.+.++++.+. .+++.
T Consensus 143 ----------l~~I~lvap~t~~eri~~i~~~s-~gfIY~-----vs~~GvTG~~~~~~~~~~~~i~~vk~~---~~~pv 203 (258)
T PRK13111 143 ----------LDLIFLVAPTTTDERLKKIASHA-SGFVYY-----VSRAGVTGARSADAADLAELVARLKAH---TDLPV 203 (258)
T ss_pred ----------CcEEEEeCCCCCHHHHHHHHHhC-CCcEEE-----EeCCCCCCcccCCCccHHHHHHHHHhc---CCCcE
Confidence 22334342212245677777531 345655 112454443 1223344444443332 24555
Q ss_pred eecccC-CchhHHHHHHCCCCEEEecchHH
Q 018508 281 LAGFAM-PHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 281 ~g~~~~-d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
+.|+.- ++++++.+.+. .+++.+|+-.+
T Consensus 204 ~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 204 AVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred EEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 445544 67888888875 99999998764
No 58
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.01 E-value=0.15 Score=48.96 Aligned_cols=166 Identities=17% Similarity=0.157 Sum_probs=98.5
Q ss_pred HHHHHHhhhcCCcEEEE--eCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHHHH
Q 018508 96 PTLAEISGLAGYDFVVV--DMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMID-SPEAA 172 (355)
Q Consensus 96 p~~~e~aa~~G~D~vil--DlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-saeea 172 (355)
..+++.+...|++.+-+ |-.+...+.+.++..-++ ...|++.+=--.++.++..+..+||++|.+--.. +.+++
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~---v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l 149 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA---VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQL 149 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh---cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHH
Confidence 34667778899999766 555555555554443322 3445444322235678999999999998776544 67889
Q ss_pred HHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcC
Q 018508 173 KEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMG 252 (355)
Q Consensus 173 ~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG 252 (355)
+++++.++.. | ..+++=+-|.+-++.+. . -|.|.|.+++-||...
T Consensus 150 ~~li~~a~~l--G---------------------------l~~lvevh~~~E~~~A~---~-~gadiIgin~rdl~~~-- 194 (260)
T PRK00278 150 KELLDYAHSL--G---------------------------LDVLVEVHDEEELERAL---K-LGAPLIGINNRNLKTF-- 194 (260)
T ss_pred HHHHHHHHHc--C---------------------------CeEEEEeCCHHHHHHHH---H-cCCCEEEECCCCcccc--
Confidence 9999887631 1 22333344665443322 2 2788888877776321
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCc-e-eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 253 YLWDPGHRKVREMMRVAEKGVLGGGKA-Y-LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 253 ~~~~~~~p~v~~ai~~iv~aa~a~g~~-~-~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+++ . ....++..... .... + .+|+ .++++++.+++.|++.+.+|+-.
T Consensus 195 ---~~d-~---~~~~~l~~~~p-~~~~vIaegGI-~t~ed~~~~~~~Gad~vlVGsaI 243 (260)
T PRK00278 195 ---EVD-L---ETTERLAPLIP-SDRLVVSESGI-FTPEDLKRLAKAGADAVLVGESL 243 (260)
T ss_pred ---cCC-H---HHHHHHHHhCC-CCCEEEEEeCC-CCHHHHHHHHHcCCCEEEECHHH
Confidence 222 1 22233333321 1212 2 2333 35889999999999999998654
No 59
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.85 E-value=0.089 Score=48.49 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=95.4
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEAAK 173 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aeea~ 173 (355)
++++.+...|+|++-+--++.. ...+.++..-+. ...+++++---.++.++..++++|+++|++....- .++++
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~ 111 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLK 111 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 4667788899999766444442 234433333222 25566655322456689999999999998654322 36777
Q ss_pred HHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCC
Q 018508 174 EAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253 (355)
Q Consensus 174 ~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~ 253 (355)
.+++.++.. | +.+++.+-|.+- +.++... ++|.+.+++.|....
T Consensus 112 ~~~~~~~~~--g---------------------------~~~~v~v~~~~e---~~~~~~~-g~~~i~~t~~~~~~~--- 155 (217)
T cd00331 112 ELYELAREL--G---------------------------MEVLVEVHDEEE---LERALAL-GAKIIGINNRDLKTF--- 155 (217)
T ss_pred HHHHHHHHc--C---------------------------CeEEEEECCHHH---HHHHHHc-CCCEEEEeCCCcccc---
Confidence 777765421 1 223444544443 4444433 688888886554321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCceeecc-cCCchhHHHHHHCCCCEEEecchH
Q 018508 254 LWDPGHRKVREMMRVAEKGVLGGGKAYLAGF-AMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 254 ~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~-~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
.+.+ +.+.++.+... .+.+.+.+. ..+++++.++++.|++.+.+|+-.
T Consensus 156 -----~~~~-~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 156 -----EVDL-NTTERLAPLIP-KDVILVSESGISTPEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred -----CcCH-HHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 1122 33333333211 234433222 235688999999999999999764
No 60
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=96.80 E-value=0.021 Score=59.48 Aligned_cols=165 Identities=17% Similarity=0.068 Sum_probs=114.2
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh--C----C--CCeEEcCCCCCHHH------------H----HHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA--T----G--TPAILRLPESCPTW------------A----KKA 153 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~--~----g--~~~iVRV~~~~~~~------------i----~~a 153 (355)
........|+|=++.|.|--..+..+.++++-.... . | ....+|+|.+.-+. + ..+
T Consensus 35 A~~~fs~lgcdE~MwD~EGK~~d~~v~~kl~s~~~~~F~~~~lG~D~flT~R~PNp~~E~~er~~l~~~~~~i~~~~d~~ 114 (494)
T PRK13655 35 AYYAFSHLGCDEVMWDYEGKETDYHVVRKLLSKYPDFFKGHILGKDVFLTPRVPNPKVEKAERKLLAETLESIANSYDLA 114 (494)
T ss_pred HHHHHHhcCCceeeecCCCCcCcHHHHHHHHHHhHHhhcCCCCCCceEEeecCCChhHHhHHHHHHHHHHHHHhHHHHHH
Confidence 445566789999999999888888888887654322 2 2 23578999864221 1 112
Q ss_pred Hhc---CCCeEeecCCCCHHHHHHHHHHcCCCC--CCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 154 LDL---GPQGVMFPMIDSPEAAKEAVSYCRFPP--SGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 154 Lda---Ga~GImvP~Vesaeea~~vv~a~~~pP--~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
... ....+++||+++++|+..+...++..- .-.+. |+.. .....+.|++++||...+.|+
T Consensus 115 ~~~~~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e----------~~~~-----~~~~~i~vvPLfEt~~dL~~a 179 (494)
T PRK13655 115 LSFYTQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKE----------WIGE-----FEPKEIEVIPLFEDADALLNA 179 (494)
T ss_pred HhcCchhhceEEecCCCCHHHHHHHHHHHHHHhHhhcccc----------ccCC-----CCcCCcceECCcCCHHHHHhH
Confidence 222 235799999999999999888876531 00111 1100 012357899999999999999
Q ss_pred HHHhc----cC----CccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q 018508 229 EDIAA----VD----GVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA 279 (355)
Q Consensus 229 eeIaa----vp----gVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~ 279 (355)
++|+. .+ +.=-||+|-.|=+.+-|+.. ..-.+..|+.++.+.++++|++
T Consensus 180 ~~i~~~ll~~~~~~~~~qeVmlGySDSakd~G~la--s~w~l~~A~~~L~~~~~~~gv~ 236 (494)
T PRK13655 180 DEILEEYLKAKKPHGKYLRVFLARSDPAMNYGHIA--SVLSVKYALSRLYELEEELGVE 236 (494)
T ss_pred HHHHHHHHhchhhcCCeeEEEEecccCccchhHHH--HHHHHHHHHHHHHHHHHHcCCc
Confidence 99984 22 45679999999888777642 2346788999999999998876
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.80 E-value=0.2 Score=47.37 Aligned_cols=184 Identities=15% Similarity=0.125 Sum_probs=101.9
Q ss_pred cEEEEEEecC--CHH----HHHHhhhcCCcEEEEeCCCC-C-CCHH-------HHH-----HHHHHHHh-CCCCe--EEc
Q 018508 85 TLYGLFLLSF--SPT----LAEISGLAGYDFVVVDMEHG-P-GGIS-------DAL-----ACLHALAA-TGTPA--ILR 141 (355)
Q Consensus 85 ~~~gl~v~~~--sp~----~~e~aa~~G~D~vilDlEh~-~-~~~~-------~a~-----~~i~a~~~-~g~~~--iVR 141 (355)
+.+-.|+.++ +++ .++.+... +|.+=|.+-.+ | .+-. .+. +.+++++. ...+. ++.
T Consensus 4 ~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y 82 (244)
T PRK13125 4 PGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTY 82 (244)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEe
Confidence 4455565554 332 33444455 99999988666 2 1211 111 34555543 23333 244
Q ss_pred CCCC--CHH-HHHHHHhcCCCeEeecC--CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 142 LPES--CPT-WAKKALDLGPQGVMFPM--IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 142 V~~~--~~~-~i~~aLdaGa~GImvP~--Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
.|.. ++. ++..+.++|++||++|. +++.++...+.+.++.. | =+..+.
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~--G-------------------------l~~~~~ 135 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK--G-------------------------LKPVFF 135 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc--C-------------------------CCEEEE
Confidence 4542 333 47889999999999996 67788898888888632 1 123344
Q ss_pred EEEccHHHHHHHHHHhccCCccE-EEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC-CchhHHHH
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDC-VQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM-PHDAPLEM 294 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~-l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~-d~~~a~~~ 294 (355)
+.=+|+ ++.++.|+.. .|+ +++|.+ |..++...+.+...++++.+... ..+++.+..- +++.++.+
T Consensus 136 v~p~T~--~e~l~~~~~~--~~~~l~msv~------~~~g~~~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~ 203 (244)
T PRK13125 136 TSPKFP--DLLIHRLSKL--SPLFIYYGLR------PATGVPLPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDA 203 (244)
T ss_pred ECCCCC--HHHHHHHHHh--CCCEEEEEeC------CCCCCCchHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHH
Confidence 444553 5667777752 333 333321 11122223444444444433221 2233333333 67899999
Q ss_pred HHCCCCEEEecchH
Q 018508 295 KSRGYHMVSGAVDV 308 (355)
Q Consensus 295 ~~~G~~~vs~~~D~ 308 (355)
++.|++.+.+|+-.
T Consensus 204 ~~~gaD~vvvGSai 217 (244)
T PRK13125 204 LSAGADGVVVGTAF 217 (244)
T ss_pred HHcCCCEEEECHHH
Confidence 99999999999654
No 62
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.79 E-value=0.059 Score=50.53 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=114.5
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHhC--CCC----eEEcCCCCCHH-HHHHHHhcCCCeEeecCCC
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAAT--GTP----AILRLPESCPT-WAKKALDLGPQGVMFPMID 167 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~~--g~~----~iVRV~~~~~~-~i~~aLdaGa~GImvP~Ve 167 (355)
+.++.+...|+|++=+|..|+-+-.. =--..+++++.. ..+ .+|. +|. ++....++|++-| .-|+|
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~----~p~~~i~~~~~~gad~i-~~H~E 90 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK----PVDRIIPDFAKAGASMI-TFHVE 90 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccC----CHHHHHHHHHHhCCCEE-EEccc
Confidence 34577778899999999999943211 111233444321 222 3443 343 5788889999855 45778
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhH
Q 018508 168 SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 168 saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DL 247 (355)
+..++.++++.+|.. |. ..-+...=+| -++.++.++. .+|.|.+=
T Consensus 91 a~~~~~~~l~~ik~~--g~-------------------------k~GlalnP~T--p~~~i~~~l~--~~D~vlvM---- 135 (220)
T PRK08883 91 ASEHVDRTLQLIKEH--GC-------------------------QAGVVLNPAT--PLHHLEYIMD--KVDLILLM---- 135 (220)
T ss_pred CcccHHHHHHHHHHc--CC-------------------------cEEEEeCCCC--CHHHHHHHHH--hCCeEEEE----
Confidence 777888888877642 21 2233444455 4667777775 57877773
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc----eeecccCCchhHHHHHHCCCCEEEecchHHHHHHHHHHHHHHHH
Q 018508 248 SASMGYLWDPGHRKVREMMRVAEKGVLGGGKA----YLAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRSAAVEDVARFK 323 (355)
Q Consensus 248 s~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~----~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~~~~~~~~r 323 (355)
+..=|..+|...|...+-++++.+...++|.. +.||+ +.+.++.+.+.|.+.+++|+-.. -..-..+.++.+|
T Consensus 136 tV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI--~~eni~~l~~aGAd~vVvGSaIf-~~~d~~~~i~~l~ 212 (220)
T PRK08883 136 SVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGV--KVDNIREIAEAGADMFVAGSAIF-GQPDYKAVIDEMR 212 (220)
T ss_pred EecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCC--CHHHHHHHHHcCCCEEEEeHHHh-CCCCHHHHHHHHH
Confidence 33345556766777777777766665554422 23333 46888899999999999996532 1223556666666
Q ss_pred Hh
Q 018508 324 MN 325 (355)
Q Consensus 324 ~~ 325 (355)
..
T Consensus 213 ~~ 214 (220)
T PRK08883 213 AE 214 (220)
T ss_pred HH
Confidence 54
No 63
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.73 E-value=0.13 Score=49.50 Aligned_cols=196 Identities=14% Similarity=0.150 Sum_probs=114.4
Q ss_pred HHHHHcCCcEEEEEEecCCH------HHHHHhhhcCCcEEEEeCCCC-C-CCHHH---H--------------HHHHHHH
Q 018508 77 KYRLQSNETLYGLFLLSFSP------TLAEISGLAGYDFVVVDMEHG-P-GGISD---A--------------LACLHAL 131 (355)
Q Consensus 77 k~~L~~G~~~~gl~v~~~sp------~~~e~aa~~G~D~vilDlEh~-~-~~~~~---a--------------~~~i~a~ 131 (355)
++.-++|++.+..|+..+.| +.++.+...|+|+|=|-.=++ | .|=+. + -++++.+
T Consensus 2 ~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~i 81 (259)
T PF00290_consen 2 AELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEI 81 (259)
T ss_dssp HHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred hhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 44556789999999998765 355677789999999998887 3 22111 1 1223333
Q ss_pred H-hC-CCCeEEcC--CCC---CH-HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCc
Q 018508 132 A-AT-GTPAILRL--PES---CP-TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDE 203 (355)
Q Consensus 132 ~-~~-g~~~iVRV--~~~---~~-~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~ 203 (355)
+ .. ..+.++-. |.. .. ..++.+.++|++||++|-.- .|+...+.+.|+..
T Consensus 82 r~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~--------------------- 139 (259)
T PF00290_consen 82 RKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-PEESEELREAAKKH--------------------- 139 (259)
T ss_dssp HHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHT---------------------
T ss_pred hccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHc---------------------
Confidence 3 22 22332221 110 11 23567888999999999974 45666666666421
Q ss_pred cccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCC-Cceee
Q 018508 204 GYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGG-KAYLA 282 (355)
Q Consensus 204 ~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g-~~~~g 282 (355)
.+.++.+|=-..--+.+..|++.. =.+|++-+ .+|..|.... +...+.+.++..|+.. ++.+.
T Consensus 140 --------gl~~I~lv~p~t~~~Ri~~i~~~a-~gFiY~vs-----~~GvTG~~~~--~~~~l~~~i~~ik~~~~~Pv~v 203 (259)
T PF00290_consen 140 --------GLDLIPLVAPTTPEERIKKIAKQA-SGFIYLVS-----RMGVTGSRTE--LPDELKEFIKRIKKHTDLPVAV 203 (259)
T ss_dssp --------T-EEEEEEETTS-HHHHHHHHHH--SSEEEEES-----SSSSSSTTSS--CHHHHHHHHHHHHHTTSS-EEE
T ss_pred --------CCeEEEEECCCCCHHHHHHHHHhC-CcEEEeec-----cCCCCCCccc--chHHHHHHHHHHHhhcCcceEE
Confidence 234555553335567788888531 24666533 2566654332 1233444555555544 55666
Q ss_pred cccC-CchhHHHHHHCCCCEEEecchHHHH
Q 018508 283 GFAM-PHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 283 ~~~~-d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
|+.- ++++++.+. .|.+++.+|+-.+=+
T Consensus 204 GFGI~~~e~~~~~~-~~aDGvIVGSa~v~~ 232 (259)
T PF00290_consen 204 GFGISTPEQAKKLA-AGADGVIVGSAFVKI 232 (259)
T ss_dssp ESSS-SHHHHHHHH-TTSSEEEESHHHHHH
T ss_pred ecCCCCHHHHHHHH-ccCCEEEECHHHHHH
Confidence 6654 568888877 999999999877543
No 64
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.69 E-value=0.075 Score=53.64 Aligned_cols=149 Identities=10% Similarity=-0.015 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEcCCCCCH-HHHHHHHhcCCCeEee-----c--CCC---CHHHHHHHHHHcCCCCCCC
Q 018508 118 PGGISDALACLHALAATGTPAILRLPESCP-TWAKKALDLGPQGVMF-----P--MID---SPEAAKEAVSYCRFPPSGV 186 (355)
Q Consensus 118 ~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-~~i~~aLdaGa~GImv-----P--~Ve---saeea~~vv~a~~~pP~G~ 186 (355)
|++.+.+.++++++...+..+.||++..+. +.+..++++|++.|.+ + +.. +.+++.++++..
T Consensus 114 P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~------- 186 (368)
T PRK08649 114 PIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL------- 186 (368)
T ss_pred CCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-------
Confidence 778888888998888777888899976444 4567788999999888 1 111 344444444321
Q ss_pred CCCcccccccccCCCCccccccCCCceEEEE-EEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCC----CCCCHH
Q 018508 187 RGSAHTVVRASGYGIDEGYLSNYEEELLIMC-QVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLW----DPGHRK 261 (355)
Q Consensus 187 Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~-mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~----~~~~p~ 261 (355)
.+.|++ .|=|++....+.+ + |+|+|.+|..==+ +... ...-|.
T Consensus 187 -------------------------~ipVIaG~V~t~e~A~~l~~-a---GAD~V~VG~G~Gs---~~~t~~~~g~g~p~ 234 (368)
T PRK08649 187 -------------------------DVPVIVGGCVTYTTALHLMR-T---GAAGVLVGIGPGA---ACTSRGVLGIGVPM 234 (368)
T ss_pred -------------------------CCCEEEeCCCCHHHHHHHHH-c---CCCEEEECCCCCc---CCCCcccCCCCcCH
Confidence 133454 7889988877776 3 8999999854211 1111 112233
Q ss_pred HHHHHHHHHHHHHhC-------CCce--eecccCCchhHHHHHHCCCCEEEecch
Q 018508 262 VREMMRVAEKGVLGG-------GKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 262 v~~ai~~iv~aa~a~-------g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
..++.++..++++. ++++ -|++ .+..++.+.+.+|.+.+.+|+=
T Consensus 235 -~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI-~~~~diakAlalGAd~Vm~Gs~ 287 (368)
T PRK08649 235 -ATAIADVAAARRDYLDETGGRYVHVIADGGI-GTSGDIAKAIACGADAVMLGSP 287 (368)
T ss_pred -HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCC-CCHHHHHHHHHcCCCeecccch
Confidence 33455554444432 2332 2333 3456666778899999988853
No 65
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.57 E-value=0.038 Score=57.71 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=114.6
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh------CC--CCeEEcCCCCCHHH-----HHHHH----------
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA------TG--TPAILRLPESCPTW-----AKKAL---------- 154 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~------~g--~~~iVRV~~~~~~~-----i~~aL---------- 154 (355)
..+.....|+|=++.|.|--..+..+.++++..... -| ....+|+|.+.-+. +...|
T Consensus 33 A~~~~s~lg~dE~MwD~EGK~~d~~vv~kl~s~~~~~f~~~~lG~D~flT~RvPNp~~E~~e~k~l~etl~si~~~~d~a 112 (506)
T TIGR02751 33 AYEAYSHLGCDEYMWDFEGKEVDTHVVRKLLSRYYDFFKEHILGKDIFLTYRVPNPAIEGAEAKLLLETLESIPRNYDVA 112 (506)
T ss_pred HHHHHHhcCCceeeeccCCccCcHHHHHHHHHhhhHhhccCCCCCceEEeecCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667799999999999888887888877654321 12 34678999864221 11111
Q ss_pred -h-cCC-----CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCcccc-ccCCCceEEEEEEccHHHHH
Q 018508 155 -D-LGP-----QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYL-SNYEEELLIMCQVESEEGVK 226 (355)
Q Consensus 155 -d-aGa-----~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~-~~~n~~i~vi~mIET~~av~ 226 (355)
+ .|. .-|++||+++++++..+....+..-.|.-..- ....... .++. +.....+.|++++||...+.
T Consensus 113 ~~~~~~~~~pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~----~~~~~~~-~e~~~~~~~~~i~VIPLFEt~~dL~ 187 (506)
T TIGR02751 113 REFYDERIAPIFEVILPMTTSADEILNVHQYYEKAVAGKQSIE----LYDEVTV-KEWLGEFKPKKIRVIPLIEDKDSLL 187 (506)
T ss_pred HHhcCCCCCceEEEEeeCCCCHHHHHHHHHHHHHhcccccccc----cccccch-hcccccCCCCCcCeecCcCCHHHHH
Confidence 1 232 35999999999999998888775422211000 0000000 0110 11134678999999999999
Q ss_pred HHHHHhc--c----CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q 018508 227 RAEDIAA--V----DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA 279 (355)
Q Consensus 227 nieeIaa--v----pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~ 279 (355)
|+++|+. . ++-=-||+|-.|=+.+.|.. ...-.+..|++++.+.|.++|++
T Consensus 188 ~a~~Il~~~l~~~~~~~qrVmLGySDSAkd~G~l--aA~~al~~Aq~~L~e~~ee~gV~ 244 (506)
T TIGR02751 188 NADEIVKEYAEAHEPEYMRVFLARSDPALNYGMI--AAVLSNKYALSRLYELSEETGIS 244 (506)
T ss_pred hHHHHHHHHHHhcCcCceEEEEecccccchhhHH--HHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999984 2 33347899999988887763 12346788999999999999986
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.43 E-value=0.12 Score=47.82 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGPG-GISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~~-~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
+..+.++.+..+|+|+|++|+-+.+. +.++..++++.++. .+.++++.+. +...+.++.+.|++.|.+
T Consensus 76 ~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~--t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 76 PTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS--TLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC--CHHHHHHHHHcCCCEEEc
Confidence 45567899999999999999876421 11445566666666 7778887765 456788999999998754
No 67
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=96.40 E-value=0.045 Score=56.89 Aligned_cols=227 Identities=14% Similarity=0.107 Sum_probs=114.7
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh--C----C--CCeEEcCCCCCHHH------------------HHH
Q 018508 99 AEISGLAGYDFVVVDMEHGPGGISDALACLHALAA--T----G--TPAILRLPESCPTW------------------AKK 152 (355)
Q Consensus 99 ~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~--~----g--~~~iVRV~~~~~~~------------------i~~ 152 (355)
.......|+|=++.|.|--..+..+.++++..... . | .-...|||.+.-+. ..+
T Consensus 34 ~~a~s~lGcdE~MwD~EGK~vd~~vvkkLls~~~~~F~~~~lGkD~flT~RvPNp~~E~~erk~l~~t~~~i~~~~d~a~ 113 (491)
T PF14010_consen 34 YYAFSHLGCDEQMWDYEGKEVDYHVVKKLLSKYPEFFKGNPLGKDFFLTPRVPNPWVEKAERKLLAETLESIPNSYDSAR 113 (491)
T ss_dssp HHHHSS----EEEEE-SSB---TTHHHHHHHHHHC--TT--TTTSSEEEEE---TTTS-HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHhcCCceeeeCCCCCcCcHHHHHHHHHHhhhhhccCCCCcceEEeecCCChhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455789999999999877777777777654432 2 2 24678999874210 122
Q ss_pred HH-h-cCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCC-ccccccC-CCceEEEEEEccHHHHHHH
Q 018508 153 AL-D-LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGID-EGYLSNY-EEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 153 aL-d-aGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~-~~y~~~~-n~~i~vi~mIET~~av~ni 228 (355)
.+ + ....-|++||++|++++..+.+..+.--.|. . .. .|... .++.... .+.+.||++||+..++.|+
T Consensus 114 ~~~~~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k---~----~~-~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~ 185 (491)
T PF14010_consen 114 LFEDVQPIFEVILPMTTSAEELIRVYRYYRKFVAGK---Q----EK-LYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNA 185 (491)
T ss_dssp HH-SS-S-SEEEESS--SHHHHHHHHHHHHHHHH----------------HHHHH-SS---TTSSEEEEEE-SHHHHHTH
T ss_pred HhccCcchheeeccccCCHHHHHHHHHHHHHHHHhh---h----hh-hhhhhHHHhccccCcCcceEeeccccHHHHhcH
Confidence 33 1 1235699999999999988777654211110 0 00 01100 1222222 3678999999999999999
Q ss_pred HHHhc--------cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCC-------chhH
Q 018508 229 EDIAA--------VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMP-------HDAP 291 (355)
Q Consensus 229 eeIaa--------vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d-------~~~a 291 (355)
++|+. -+.-=-||+|..|=++..|+-.. --.+..|+.++.+-..+.|++ ++-|+.+. +..+
T Consensus 186 ~~Il~~y~~~~g~~~~y~RVFLarSDpAmnyG~iaa--~L~~k~AL~~l~~~~~e~gi~IyPIiG~GS~PFRG~l~p~~~ 263 (491)
T PF14010_consen 186 DEILEEYLKDKGRDPEYQRVFLARSDPAMNYGHIAA--VLANKYALSKLYELEEELGIPIYPIIGVGSPPFRGGLSPPNV 263 (491)
T ss_dssp HHHHHHHHHHTT---SEEEEEEESHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTGH
T ss_pred HHHHHHHHHHhcCCchheeeeeccCchhhccchHHH--HHHHHHHHHHHHHHHHhcCCceeeeeccCCCCcCCCCChHhH
Confidence 99984 12334799999999999986411 123567788888888888877 33344333 3555
Q ss_pred HHHHHC--CCCEEEecchHHHH----HHHHHHHHHHHHHhcCCCCCCCCCCc
Q 018508 292 LEMKSR--GYHMVSGAVDVGLF----RSAAVEDVARFKMNLTDDADDDDDDD 337 (355)
Q Consensus 292 ~~~~~~--G~~~vs~~~D~~ll----~~~~~~~~~~~r~~~~~~~~~~~~~~ 337 (355)
..+++. |+.-+.+ ++.+= .+-...++..++.........-|++|
T Consensus 264 ~~~~~EY~gv~T~TI--QSAfrYD~p~~~v~~ai~~l~~~~~~~p~~~~~ee 313 (491)
T PF14010_consen 264 ERVLEEYPGVYTFTI--QSAFRYDYPYEEVIKAIEKLNEAPRKKPRIIDEEE 313 (491)
T ss_dssp HHHHHHTTT-SEEEE---HHHHHTTHHHHHHHHHHHHHHGGG-------HHH
T ss_pred HHHHHhcCCeeEEEe--eehhhcCCCHHHHHHHHHHHHhcccCCcccCChHH
Confidence 555443 4444433 33321 23334555666665555555444443
No 68
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.29 E-value=0.14 Score=47.83 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=91.9
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHH--HHHHHHHh-CCCC--eEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDAL--ACLHALAA-TGTP--AILRLPESCPTWAKKALDLGPQGVMFPMID-SPEA 171 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~--~~i~a~~~-~g~~--~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-saee 171 (355)
.++.+...|.|++=+|..|+.+...... ..+++++. .... +-.-|+++ ...+..++.+|++||.+.--. ..+.
T Consensus 25 ~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p-~d~~~~~~~~gad~v~vH~~q~~~d~ 103 (229)
T PLN02334 25 EAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNP-EDYVPDFAKAGASIFTFHIEQASTIH 103 (229)
T ss_pred HHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCH-HHHHHHHHHcCCCEEEEeeccccchh
Confidence 4677888899999999999843211111 22333322 2222 12223321 124677789999999665542 2234
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
....++.++.. | ..++.-+ .|+ ++.+.++...-++|.+.+|+-.=
T Consensus 104 ~~~~~~~i~~~--g---------------------------~~iGls~~~~t~--~~~~~~~~~~~~~Dyi~~~~v~p-- 150 (229)
T PLN02334 104 LHRLIQQIKSA--G---------------------------MKAGVVLNPGTP--VEAVEPVVEKGLVDMVLVMSVEP-- 150 (229)
T ss_pred HHHHHHHHHHC--C---------------------------CeEEEEECCCCC--HHHHHHHHhccCCCEEEEEEEec--
Confidence 44555544321 1 1233333 243 34455555421289999987532
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchH
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
|..++...|...+-+.++.+.. .+.+ +.||+ +++.++.+++.|.+.+++++-+
T Consensus 151 --g~~~~~~~~~~~~~i~~~~~~~--~~~~I~a~GGI--~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 151 --GFGGQSFIPSMMDKVRALRKKY--PELDIEVDGGV--GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred --CCCccccCHHHHHHHHHHHHhC--CCCcEEEeCCC--CHHHHHHHHHcCCCEEEEChHH
Confidence 2223333344444444432221 1223 24444 5788899999999999999653
No 69
>PLN02591 tryptophan synthase
Probab=96.27 E-value=0.95 Score=43.38 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=103.5
Q ss_pred EEEEEEecCCHH------HHHHhhhcCCcEEEEeCCCC-C-CCHHHH-----------------HHHHHHHHhC-CCCeE
Q 018508 86 LYGLFLLSFSPT------LAEISGLAGYDFVVVDMEHG-P-GGISDA-----------------LACLHALAAT-GTPAI 139 (355)
Q Consensus 86 ~~gl~v~~~sp~------~~e~aa~~G~D~vilDlEh~-~-~~~~~a-----------------~~~i~a~~~~-g~~~i 139 (355)
.+..|+..+.|. .++.+...|+|.|=|..=.+ | .|=+.. .++++.++.. ..+.+
T Consensus 3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i 82 (250)
T PLN02591 3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV 82 (250)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 455666655432 34556678999988887766 2 221111 1222333321 22222
Q ss_pred EcC--CCC---C-HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCce
Q 018508 140 LRL--PES---C-PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEEL 213 (355)
Q Consensus 140 VRV--~~~---~-~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i 213 (355)
+-. |.. . ...++++-++|++||++|-. ..||...+.+.++.. .+
T Consensus 83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~-----------------------------gl 132 (250)
T PLN02591 83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL-PLEETEALRAEAAKN-----------------------------GI 132 (250)
T ss_pred EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHc-----------------------------CC
Confidence 221 111 0 12367888999999999987 468898988888631 23
Q ss_pred EEEEEE-ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCC--CHHHHHHHHHHHHHHHh-CCCceeecccCC-c
Q 018508 214 LIMCQV-ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPG--HRKVREMMRVAEKGVLG-GGKAYLAGFAMP-H 288 (355)
Q Consensus 214 ~vi~mI-ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~--~p~v~~ai~~iv~aa~a-~g~~~~g~~~~d-~ 288 (355)
..+.+| -|.. -+.+..|++.. =++|++ -..+|..+... .+.+. +.++.+|+ .+++.+.|+.-. +
T Consensus 133 ~~I~lv~Ptt~-~~ri~~ia~~~-~gFIY~-----Vs~~GvTG~~~~~~~~~~----~~i~~vk~~~~~Pv~vGFGI~~~ 201 (250)
T PLN02591 133 ELVLLTTPTTP-TERMKAIAEAS-EGFVYL-----VSSTGVTGARASVSGRVE----SLLQELKEVTDKPVAVGFGISKP 201 (250)
T ss_pred eEEEEeCCCCC-HHHHHHHHHhC-CCcEEE-----eeCCCCcCCCcCCchhHH----HHHHHHHhcCCCceEEeCCCCCH
Confidence 445555 2221 35677777531 134432 11256665422 23333 33444444 355566666554 8
Q ss_pred hhHHHHHHCCCCEEEecchH
Q 018508 289 DAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 289 ~~a~~~~~~G~~~vs~~~D~ 308 (355)
++++.+.+.|.+++.+|+-.
T Consensus 202 e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 202 EHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred HHHHHHHhcCCCEEEECHHH
Confidence 99999999999999999866
No 70
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.24 E-value=0.12 Score=50.40 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=79.3
Q ss_pred HHHHhhhcCCcEEEE-eC-------------CCCCCCHHHHHHHHHHHHhC----CCCeEEcCCC----CCH-HH---HH
Q 018508 98 LAEISGLAGYDFVVV-DM-------------EHGPGGISDALACLHALAAT----GTPAILRLPE----SCP-TW---AK 151 (355)
Q Consensus 98 ~~e~aa~~G~D~vil-Dl-------------Eh~~~~~~~a~~~i~a~~~~----g~~~iVRV~~----~~~-~~---i~ 151 (355)
.++.+..+|+..|.| |- |+...+.++....|+++... ...++.|+.. ... +. .+
T Consensus 97 ~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ 176 (285)
T TIGR02320 97 LVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAE 176 (285)
T ss_pred HHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHH
Confidence 467778899998888 42 11234566667777765432 3466789433 222 22 45
Q ss_pred HHHhcCCCeEeecC-CCCHHHHHHHHHHcC--CCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 152 KALDLGPQGVMFPM-IDSPEAAKEAVSYCR--FPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 152 ~aLdaGa~GImvP~-Vesaeea~~vv~a~~--~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
+..++|||+|++|. ..+.++++++.+.++ ||| +.++ ++.+..+...+
T Consensus 177 ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~-----------------------------~pl~-~~~~~~~~~~~ 226 (285)
T TIGR02320 177 AYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPR-----------------------------TPLV-IVPTSYYTTPT 226 (285)
T ss_pred HHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCC-----------------------------CCEE-EecCCCCCCCH
Confidence 67899999999995 799999999999874 222 1121 23343344467
Q ss_pred HHHhccCCccEEEEChhhHHhh
Q 018508 229 EDIAAVDGVDCVQMGPLDLSAS 250 (355)
Q Consensus 229 eeIaavpgVD~l~iGp~DLs~s 250 (355)
+++.+. |+..+++|+.=+...
T Consensus 227 ~eL~~l-G~~~v~~~~~~~~aa 247 (285)
T TIGR02320 227 DEFRDA-GISVVIYANHLLRAA 247 (285)
T ss_pred HHHHHc-CCCEEEEhHHHHHHH
Confidence 888776 899999988755433
No 71
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.18 E-value=0.43 Score=45.15 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=100.5
Q ss_pred EEEEecCCH------HHHHHhhhcCCcEEEEe------CCCCCCCHH-------------HHHHHHHHHHh-CCCCeEE-
Q 018508 88 GLFLLSFSP------TLAEISGLAGYDFVVVD------MEHGPGGIS-------------DALACLHALAA-TGTPAIL- 140 (355)
Q Consensus 88 gl~v~~~sp------~~~e~aa~~G~D~vilD------lEh~~~~~~-------------~a~~~i~a~~~-~g~~~iV- 140 (355)
..|+..+.| +.++.+...|+|++=|| .-|++.-.. ..-+.+..++. ...++++
T Consensus 3 i~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm 82 (242)
T cd04724 3 IPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLM 82 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEE
Confidence 345555444 24556677899999999 666643211 22234444443 2344333
Q ss_pred -cCCCC----CHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEE
Q 018508 141 -RLPES----CPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLI 215 (355)
Q Consensus 141 -RV~~~----~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~v 215 (355)
-.|.. -...+..+.++|++||++|-.. .|+...+.+.++.. |. ...+
T Consensus 83 ~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~--g~-------------------------~~i~ 134 (242)
T cd04724 83 GYYNPILQYGLERFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEY--GL-------------------------DLIF 134 (242)
T ss_pred EecCHHHHhCHHHHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHc--CC-------------------------cEEE
Confidence 44431 1345788999999999998764 58888888888742 10 1122
Q ss_pred EEEEccHHHHHHHHHHhccCCccEEEE-ChhhHHhhcCCCC-CC-CCHHHHHHHHHHHHHHHhCCCceeecccC-CchhH
Q 018508 216 MCQVESEEGVKRAEDIAAVDGVDCVQM-GPLDLSASMGYLW-DP-GHRKVREMMRVAEKGVLGGGKAYLAGFAM-PHDAP 291 (355)
Q Consensus 216 i~mIET~~av~nieeIaavpgVD~l~i-Gp~DLs~slG~~~-~~-~~p~v~~ai~~iv~aa~a~g~~~~g~~~~-d~~~a 291 (355)
.+.=.| -.+.++.|++. ..++|++ +. .|..+ +. ..+.+.+.++++.+. ...+++.+..- +++.+
T Consensus 135 ~i~P~T--~~~~i~~i~~~-~~~~vy~~s~------~g~tG~~~~~~~~~~~~i~~lr~~---~~~pI~vggGI~~~e~~ 202 (242)
T cd04724 135 LVAPTT--PDERIKKIAEL-ASGFIYYVSR------TGVTGARTELPDDLKELIKRIRKY---TDLPIAVGFGISTPEQA 202 (242)
T ss_pred EeCCCC--CHHHHHHHHhh-CCCCEEEEeC------CCCCCCccCCChhHHHHHHHHHhc---CCCcEEEEccCCCHHHH
Confidence 222334 35567777752 2344432 21 23322 22 234455545444332 23444333433 46788
Q ss_pred HHHHHCCCCEEEecchHH
Q 018508 292 LEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 292 ~~~~~~G~~~vs~~~D~~ 309 (355)
+.+.+. .+.+.+|+-..
T Consensus 203 ~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 203 AEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHcc-CCEEEECHHHH
Confidence 888888 99999996443
No 72
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.17 E-value=0.077 Score=54.25 Aligned_cols=196 Identities=16% Similarity=0.173 Sum_probs=101.1
Q ss_pred cEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeE---EcCCCCCHHHHHHHHhc
Q 018508 85 TLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAI---LRLPESCPTWAKKALDL 156 (355)
Q Consensus 85 ~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~i---VRV~~~~~~~i~~aLda 156 (355)
+.+-+-+...+++ .++.+...|.|++=++. +.......+.++.+. ..+...+ +|+.+.....+..+.++
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~---p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~a 80 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGT---PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKA 80 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCC---HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHc
Confidence 3344444444443 44555668999884321 222222333444443 2333332 45554434578899999
Q ss_pred CCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE-EEEccHHHHHHHHHHhccC
Q 018508 157 GPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM-CQVESEEGVKRAEDIAAVD 235 (355)
Q Consensus 157 Ga~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi-~mIET~~av~nieeIaavp 235 (355)
|+++|.+|--.+...+.++++.++.. |. .+.+. ...+|. ++.+.++.+ -
T Consensus 81 GAdgV~v~g~~~~~~~~~~i~~a~~~--G~-------------------------~~~~g~~s~~t~--~e~~~~a~~-~ 130 (430)
T PRK07028 81 GADIVCILGLADDSTIEDAVRAARKY--GV-------------------------RLMADLINVPDP--VKRAVELEE-L 130 (430)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHc--CC-------------------------EEEEEecCCCCH--HHHHHHHHh-c
Confidence 99999998554444556666665421 10 11111 223442 344444443 2
Q ss_pred CccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHHHHHH
Q 018508 236 GVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRS 313 (355)
Q Consensus 236 gVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~ 313 (355)
|+|.|.++|.=-.+..+ +...+.++++... .+.++ .||+ +.+.+..+++.|.+.+.+++-+.- ..
T Consensus 131 GaD~I~~~pg~~~~~~~-------~~~~~~l~~l~~~---~~iPI~a~GGI--~~~n~~~~l~aGAdgv~vGsaI~~-~~ 197 (430)
T PRK07028 131 GVDYINVHVGIDQQMLG-------KDPLELLKEVSEE---VSIPIAVAGGL--DAETAAKAVAAGADIVIVGGNIIK-SA 197 (430)
T ss_pred CCCEEEEEeccchhhcC-------CChHHHHHHHHhh---CCCcEEEECCC--CHHHHHHHHHcCCCEEEEChHHcC-CC
Confidence 78999887632111111 1112333333322 23443 3333 567788899999999999976531 11
Q ss_pred HHHHHHHHHHHhc
Q 018508 314 AAVEDVARFKMNL 326 (355)
Q Consensus 314 ~~~~~~~~~r~~~ 326 (355)
-.++.+..+++.+
T Consensus 198 d~~~~~~~l~~~i 210 (430)
T PRK07028 198 DVTEAARKIREAI 210 (430)
T ss_pred CHHHHHHHHHHHH
Confidence 2344445555543
No 73
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.13 E-value=0.36 Score=43.52 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=78.4
Q ss_pred CCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEc-CCCCCHHHHHHHHhcCCCe
Q 018508 83 NETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILR-LPESCPTWAKKALDLGPQG 160 (355)
Q Consensus 83 G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVR-V~~~~~~~i~~aLdaGa~G 160 (355)
+-++++.+.-.+. ...++.+..+|+|++++..|-.+ +....+++.++..|..++|= ++..++....+++..|++.
T Consensus 53 ~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~---~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~ 129 (202)
T cd04726 53 DKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL---STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDI 129 (202)
T ss_pred CCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH---HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCE
Confidence 3455444332222 24578899999999999888643 45566777777778877764 4555666666788889998
Q ss_pred Eee-cCC--------CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHH
Q 018508 161 VMF-PMI--------DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDI 231 (355)
Q Consensus 161 Imv-P~V--------esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeI 231 (355)
|.+ |-. .+.+.++++.+.. +-.+.+..-| ++ +|+.+.
T Consensus 130 v~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------~~~i~~~GGI-~~---~~i~~~ 175 (202)
T cd04726 130 VILHRGIDAQAAGGWWPEDDLKKVKKLL------------------------------GVKVAVAGGI-TP---DTLPEF 175 (202)
T ss_pred EEEcCcccccccCCCCCHHHHHHHHhhc------------------------------CCCEEEECCc-CH---HHHHHH
Confidence 877 632 2233333333321 1123344444 33 577777
Q ss_pred hccCCccEEEEChh
Q 018508 232 AAVDGVDCVQMGPL 245 (355)
Q Consensus 232 aavpgVD~l~iGp~ 245 (355)
.+. |+|++.+|++
T Consensus 176 ~~~-Gad~vvvGsa 188 (202)
T cd04726 176 KKA-GADIVIVGRA 188 (202)
T ss_pred Hhc-CCCEEEEeeh
Confidence 754 8999999976
No 74
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.09 E-value=0.23 Score=44.98 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=88.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHH----HHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHA----LAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAK 173 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a----~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~ 173 (355)
.++.+...|.|+|-+|.-+.. .......++. +...+...++- ..+..+++.|++||.+|.-... ..
T Consensus 26 ~~~~~~~~gv~~v~lr~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~~~~~--~~ 95 (212)
T PRK00043 26 VVEAALEGGVTLVQLREKGLD--TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQDDLP--VA 95 (212)
T ss_pred HHHHHHhcCCCEEEEeCCCCC--HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCcccCC--HH
Confidence 567788889999999987743 2333323322 23456666662 3577889999999999864321 11
Q ss_pred HHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCC
Q 018508 174 EAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253 (355)
Q Consensus 174 ~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~ 253 (355)
.+ +.++. ....+++.+-|++-+..+. ..|+|.|.+|+-.-+.+ .
T Consensus 96 ~~-~~~~~-----------------------------~~~~~g~~~~t~~e~~~a~----~~gaD~v~~~~~~~~~~--~ 139 (212)
T PRK00043 96 DA-RALLG-----------------------------PDAIIGLSTHTLEEAAAAL----AAGADYVGVGPIFPTPT--K 139 (212)
T ss_pred HH-HHHcC-----------------------------CCCEEEEeCCCHHHHHHHh----HcCCCEEEECCccCCCC--C
Confidence 11 11111 1234566665644333222 24899999986522211 0
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecchH
Q 018508 254 LWDPGHRKV-REMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 254 ~~~~~~p~v-~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
++. .+.. .+.+.++.+.....-+...||+ +++.+..+++.|++++++++..
T Consensus 140 ~~~--~~~~g~~~~~~~~~~~~~~~v~a~GGI--~~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 140 KDA--KAPQGLEGLREIRAAVGDIPIVAIGGI--TPENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred CCC--CCCCCHHHHHHHHHhcCCCCEEEECCc--CHHHHHHHHHcCCCEEEEeHHh
Confidence 000 0011 2333433333211111234544 5688889999999999998764
No 75
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.09 E-value=0.29 Score=46.11 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=113.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHhC--CC----CeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCC
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAAT--GT----PAILRLPESCPT-WAKKALDLGPQGVMFPMIDS 168 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~~--g~----~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Ves 168 (355)
.++.+...|+|++=+|..|+-+-.. =--..+++++.. .. ..+|. +|. ++....++|++-|.+ |+|+
T Consensus 21 ~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~----~P~~~i~~~~~~gad~I~~-H~Ea 95 (223)
T PRK08745 21 EVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVE----PVDRIVPDFADAGATTISF-HPEA 95 (223)
T ss_pred HHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccC----CHHHHHHHHHHhCCCEEEE-cccC
Confidence 4567778899999999999942111 111233443321 22 23442 343 578888999996555 6676
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHH
Q 018508 169 PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLS 248 (355)
Q Consensus 169 aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs 248 (355)
..+..++++.+|.. |. ..-+...-+| -++.++.++. .+|.|.+=+-
T Consensus 96 ~~~~~~~l~~Ir~~--g~-------------------------k~GlalnP~T--~~~~i~~~l~--~vD~VlvMtV--- 141 (223)
T PRK08745 96 SRHVHRTIQLIKSH--GC-------------------------QAGLVLNPAT--PVDILDWVLP--ELDLVLVMSV--- 141 (223)
T ss_pred cccHHHHHHHHHHC--CC-------------------------ceeEEeCCCC--CHHHHHHHHh--hcCEEEEEEE---
Confidence 67777777777642 21 2234444455 3566777775 5787777433
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc--cCCchhHHHHHHCCCCEEEecchHHHH-HHHHHHHHHHHHHh
Q 018508 249 ASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF--AMPHDAPLEMKSRGYHMVSGAVDVGLF-RSAAVEDVARFKMN 325 (355)
Q Consensus 249 ~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~--~~d~~~a~~~~~~G~~~vs~~~D~~ll-~~~~~~~~~~~r~~ 325 (355)
.=|..||...|...+-++++.+...+++....-.+ .-+.+.++.+.+.|.+.+++|+- ++ ..-.++.++.+|..
T Consensus 142 -~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa--iF~~~d~~~~~~~lr~~ 218 (223)
T PRK08745 142 -NPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA--IFNAPDYAQVIAQMRAA 218 (223)
T ss_pred -CCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh--hhCCCCHHHHHHHHHHH
Confidence 34666777777777777766655555553311111 12457788999999999999964 33 22356667777654
No 76
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.02 E-value=0.94 Score=41.85 Aligned_cols=171 Identities=16% Similarity=0.060 Sum_probs=94.1
Q ss_pred ecCCHHHHHHhhhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHhC---CCCeEEcCCC---CCHHHHHHHHhcCCCeEeec
Q 018508 92 LSFSPTLAEISGLAGY-DFVVVDMEHGPGGISDALACLHALAAT---GTPAILRLPE---SCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 92 ~~~sp~~~e~aa~~G~-D~vilDlEh~~~~~~~a~~~i~a~~~~---g~~~iVRV~~---~~~~~i~~aLdaGa~GImvP 164 (355)
.+.+++.++.++..|+ .++ -. .-.+.+++.+.++.++.. ...+-+.++. .....+..+.++|+++|.+|
T Consensus 12 g~~~~~~~~~~~~~G~ig~i--~~--~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~ 87 (236)
T cd04730 12 GVSTPELAAAVSNAGGLGFI--GA--GYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFS 87 (236)
T ss_pred CCCCHHHHHHHHhCCCcccc--CC--CCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEc
Confidence 3468888888888874 332 11 123556666666555422 1223344454 22345788889999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEECh
Q 018508 165 MIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 165 ~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp 244 (355)
.-++.+.++.+.+ + .+.++..+.+. +.+.++.+ .+.|++.+.+
T Consensus 88 ~~~~~~~~~~~~~---~------------------------------~i~~i~~v~~~---~~~~~~~~-~gad~i~~~~ 130 (236)
T cd04730 88 FGPPAEVVERLKA---A------------------------------GIKVIPTVTSV---EEARKAEA-AGADALVAQG 130 (236)
T ss_pred CCCCHHHHHHHHH---c------------------------------CCEEEEeCCCH---HHHHHHHH-cCCCEEEEeC
Confidence 8865443333322 0 13455666665 34444444 3688888743
Q ss_pred hhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeeccc-CCchhHHHHHHCCCCEEEecchHHH
Q 018508 245 LDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFA-MPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 245 ~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~-~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
.. .-|...... +...+.+.++.+.. .++++.+-. .+++.+.++++.|.+++.+++-...
T Consensus 131 ~~---~~G~~~~~~-~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 131 AE---AGGHRGTFD-IGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred cC---CCCCCCccc-cCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 21 112222211 12234444443322 344432222 2357888888999999999876643
No 77
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.01 E-value=0.38 Score=44.50 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCeEee--cCCCCH--HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccH
Q 018508 147 PTWAKKALDLGPQGVMF--PMIDSP--EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESE 222 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv--P~Vesa--eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~ 222 (355)
..++..+.++|++.|++ |...++ +++.++++.++.. ..+.+++-+-|.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------------------~~i~vi~~v~t~ 129 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------------------PGQLLMADCSTL 129 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------------------CCCeEEEeCCCH
Confidence 45789999999994432 333333 6667777776531 013344444444
Q ss_pred HHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeeccc-CCchhHHHHHHCCCCE
Q 018508 223 EGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFA-MPHDAPLEMKSRGYHM 301 (355)
Q Consensus 223 ~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~-~d~~~a~~~~~~G~~~ 301 (355)
+-+. ... --|+|.+.++..++...-. .. .+.....+.++.... +++++.+.. .+++++..+++.|+++
T Consensus 130 ee~~---~a~-~~G~d~i~~~~~g~t~~~~---~~-~~~~~~~i~~i~~~~---~iPvia~GGI~t~~~~~~~l~~Gadg 198 (221)
T PRK01130 130 EEGL---AAQ-KLGFDFIGTTLSGYTEETK---KP-EEPDFALLKELLKAV---GCPVIAEGRINTPEQAKKALELGAHA 198 (221)
T ss_pred HHHH---HHH-HcCCCEEEcCCceeecCCC---CC-CCcCHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 4332 222 2378988776544432110 11 111123344443332 455433222 3678899999999999
Q ss_pred EEecchH
Q 018508 302 VSGAVDV 308 (355)
Q Consensus 302 vs~~~D~ 308 (355)
+.+|+-.
T Consensus 199 V~iGsai 205 (221)
T PRK01130 199 VVVGGAI 205 (221)
T ss_pred EEEchHh
Confidence 9999643
No 78
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.00 E-value=0.8 Score=40.42 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHH----HHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLH----ALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~----a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aee 171 (355)
..++.+...|.++|-||.-+... ......+. .+...+...+| ++ .+..+++.|++||.+|.... ...
T Consensus 16 ~~l~~l~~~g~~~i~lr~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~--~~----~~~~a~~~g~~~vh~~~~~~~~~~ 87 (196)
T cd00564 16 EVVEAALKGGVTLVQLREKDLSA--RELLELARALRELCRKYGVPLII--ND----RVDLALAVGADGVHLGQDDLPVAE 87 (196)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCH--HHHHHHHHHHHHHHHHhCCeEEE--eC----hHHHHHHcCCCEEecCcccCCHHH
Confidence 45677888899999999887642 22222222 22334666665 22 36668899999999886432 222
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl 251 (355)
++.+. . ....+.+.+.|++-+. +... .|+|.|++|+-.=+.+
T Consensus 88 ~~~~~---~------------------------------~~~~~g~~~~t~~~~~---~~~~-~g~d~i~~~~~~~~~~- 129 (196)
T cd00564 88 ARALL---G------------------------------PDLIIGVSTHSLEEAL---RAEE-LGADYVGFGPVFPTPT- 129 (196)
T ss_pred HHHHc---C------------------------------CCCEEEeeCCCHHHHH---HHhh-cCCCEEEECCccCCCC-
Confidence 22211 1 1234566666763333 2222 3799999987622111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchH
Q 018508 252 GYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 252 G~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+- + ...+.-...+.++.+. ...+ ..||+ +.+.+..+++.|++++++++..
T Consensus 130 ~~-~-~~~~~~~~~~~~~~~~---~~~pv~a~GGi--~~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 130 KP-G-AGPPLGLELLREIAEL---VEIPVVAIGGI--TPENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred CC-C-CCCCCCHHHHHHHHHh---CCCCEEEECCC--CHHHHHHHHHcCCCEEEEehHh
Confidence 10 0 0011112233333222 2333 24444 4577889999999999999764
No 79
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.28 Score=46.17 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=116.5
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCC--CHHHHHHHHHHHHhC-CCC----eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPG--GISDALACLHALAAT-GTP----AILRLPESCPTWAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~--~~~~a~~~i~a~~~~-g~~----~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesa 169 (355)
+.++.+-.+|+|++=+|..|+-+ +..=--..+.+++.. ..+ .+|--| ..++.+..++||+-|.+ |+|..
T Consensus 20 ~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p---~~~i~~fa~agad~It~-H~E~~ 95 (220)
T COG0036 20 EELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENP---DRYIEAFAKAGADIITF-HAEAT 95 (220)
T ss_pred HHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH---HHHHHHHHHhCCCEEEE-EeccC
Confidence 34677778999999999999832 111001223333222 222 233222 34688899999988777 77877
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 170 EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 170 eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
+.+.++++.+|.. |. ..-+...=+|| ++.++.++. .||.|.+- |.
T Consensus 96 ~~~~r~i~~Ik~~--G~-------------------------kaGv~lnP~Tp--~~~i~~~l~--~vD~VllM----sV 140 (220)
T COG0036 96 EHIHRTIQLIKEL--GV-------------------------KAGLVLNPATP--LEALEPVLD--DVDLVLLM----SV 140 (220)
T ss_pred cCHHHHHHHHHHc--CC-------------------------eEEEEECCCCC--HHHHHHHHh--hCCEEEEE----eE
Confidence 8888888888742 21 12234444565 567777775 68888773 22
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc--cCCchhHHHHHHCCCCEEEecchHHHHHHHHHHHHHHHHHh
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF--AMPHDAPLEMKSRGYHMVSGAVDVGLFRSAAVEDVARFKMN 325 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~--~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~~~~~~~~r~~ 325 (355)
.=|..||..-|++.+-++++.+...+.+ .+.-.+ ..+.+.++.+.+.|.+.++.|+ ..+-..-+++.+..+|..
T Consensus 141 nPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS-alF~~~d~~~~i~~~~~~ 216 (220)
T COG0036 141 NPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS-ALFGADDYKATIRELRGE 216 (220)
T ss_pred CCCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE-EEeCCccHHHHHHHHHHH
Confidence 3366677777888777776655554433 321112 2245778899999999999998 333333367777777664
No 80
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.87 E-value=0.32 Score=48.16 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=116.9
Q ss_pred cccccccccccccCC-CCCCCCCCCCCCCCCCCchHHHHHHHcCCcEEEEEE-ecCCHHHHHHhhhcCCcEEEEeCCCCC
Q 018508 41 IVFPKLKLTPSVSRS-PSDLSPGDPLSPSPSPSPESLKYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDMEHGP 118 (355)
Q Consensus 41 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~lk~~L~~G~~~~gl~v-~~~sp~~~e~aa~~G~D~vilDlEh~~ 118 (355)
..|.++.|.|..|.- |++- + ...+|...+.-.-|++.-=+ ...++.++..++..|.=.++- .+
T Consensus 2 ~~~ddv~l~p~~~~~~~~~v------d-----l~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~-~~--- 66 (325)
T cd00381 2 LTFDDVLLVPGYSTVLPSEV------D-----LSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIH-RN--- 66 (325)
T ss_pred CCcccEEEeCCCCCCCHHHc------e-----eeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEe-CC---
Confidence 367888888876532 1111 1 11222223333445554322 346788888777777533332 22
Q ss_pred CCHHHHHHHHHHHHhC-CCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHHHHHHHHHHcCCCCCCCCCCccccccc
Q 018508 119 GGISDALACLHALAAT-GTPAILRLPESCPTWAKKALDLGPQGVMFPMID-SPEAAKEAVSYCRFPPSGVRGSAHTVVRA 196 (355)
Q Consensus 119 ~~~~~a~~~i~a~~~~-g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-saeea~~vv~a~~~pP~G~Rg~g~~~~ra 196 (355)
...++.+..++.++.. .....+-++......+..++++|++.|.+-.-. +.+.+.+.++.++..
T Consensus 67 ~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~-------------- 132 (325)
T cd00381 67 MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK-------------- 132 (325)
T ss_pred CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH--------------
Confidence 2345556666665411 111122222222345788899999998875431 224455555555421
Q ss_pred ccCCCCccccccCCCceEEEE-EEccHHHHHHHHHHhccCCccEEEEC--hhhHHhhcCCCCCCCCHHHHHHHHHHHHHH
Q 018508 197 SGYGIDEGYLSNYEEELLIMC-QVESEEGVKRAEDIAAVDGVDCVQMG--PLDLSASMGYLWDPGHRKVREMMRVAEKGV 273 (355)
Q Consensus 197 ~~~g~~~~y~~~~n~~i~vi~-mIET~~av~nieeIaavpgVD~l~iG--p~DLs~slG~~~~~~~p~v~~ai~~iv~aa 273 (355)
..++.+++ .+.|++....+.+ -|+|+|.+| ++--. .+......+.....++..+.+.+
T Consensus 133 -------------~p~v~Vi~G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~--~t~~~~g~g~p~~~~i~~v~~~~ 193 (325)
T cd00381 133 -------------YPNVDVIAGNVVTAEAARDLID----AGADGVKVGIGPGSIC--TTRIVTGVGVPQATAVADVAAAA 193 (325)
T ss_pred -------------CCCceEEECCCCCHHHHHHHHh----cCCCEEEECCCCCcCc--ccceeCCCCCCHHHHHHHHHHHH
Confidence 01244443 7888888777765 289999884 33100 00000001222335666777777
Q ss_pred HhCCCceee--cccCCchhHHHHHHCCCCEEEecch
Q 018508 274 LGGGKAYLA--GFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 274 ~a~g~~~~g--~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
+..+++++. ++ .++.++.+.+++|++.+.+|+=
T Consensus 194 ~~~~vpVIA~GGI-~~~~di~kAla~GA~~VmiGt~ 228 (325)
T cd00381 194 RDYGVPVIADGGI-RTSGDIVKALAAGADAVMLGSL 228 (325)
T ss_pred hhcCCcEEecCCC-CCHHHHHHHHHcCCCEEEecch
Confidence 766666432 33 3567777788899999999753
No 81
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=95.76 E-value=0.021 Score=60.98 Aligned_cols=135 Identities=16% Similarity=0.035 Sum_probs=88.0
Q ss_pred CCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc--c
Q 018508 157 GPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--V 234 (355)
Q Consensus 157 Ga~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--v 234 (355)
|.--|+.||.++++|++--.+...+.+ +++.-..+.+.+.+||||..+.-|++||.. -
T Consensus 386 GsiY~ykPKmhgp~EaafwndlF~~~E--------------------d~LGLp~gTIK~gVmdEerras~nL~EcI~elr 445 (721)
T TIGR01345 386 GSVYIVKPKMHGPEEVAFANKLFTRIE--------------------DMLGLARHTLKMGVMDEERRTSLNLRACIAQVR 445 (721)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHHH--------------------HHhCCCCCceEEEEEEeccHhHhhHHHHHHHHH
Confidence 344699999999999986665543321 122223567999999999999999999983 3
Q ss_pred CCccEEEEChhhHHhhc-----CCC---C---CCCCHHHHHHHHHHHH---HHHhCCCceee-cccCCchhHHHH-----
Q 018508 235 DGVDCVQMGPLDLSASM-----GYL---W---DPGHRKVREMMRVAEK---GVLGGGKAYLA-GFAMPHDAPLEM----- 294 (355)
Q Consensus 235 pgVD~l~iGp~DLs~sl-----G~~---~---~~~~p~v~~ai~~iv~---aa~a~g~~~~g-~~~~d~~~a~~~----- 294 (355)
+++-+|-.|.-|.+.|. ... . ....|-+..-....+. +|+..|+.-+| |++.-|.....+
T Consensus 446 drv~fiNtGfwDytfseIht~~~ag~~vRk~~mm~~pwm~AYe~~nV~~gl~Ch~rG~aaIGkGMwA~Pdama~m~~dK~ 525 (721)
T TIGR01345 446 NRVAFINTGFLDRTGDEIHTSMEAGPMLRKNDMKSTPWIKAYERNNVLAGLFCGLRGKAQIGKGMWAMPDLMAEMYEQKG 525 (721)
T ss_pred hheeecccCchhhhhhHHHHHhhcCCccchhcccccHHHHHHHHHHhHHhHhcCCCCchhcCCCcccCcHHHHHHHHHHh
Confidence 78999999999988863 111 0 1123333333444555 88888887777 775556432222
Q ss_pred --HHCCCCE-EEecchHHHH
Q 018508 295 --KSRGYHM-VSGAVDVGLF 311 (355)
Q Consensus 295 --~~~G~~~-vs~~~D~~ll 311 (355)
...|++. .+.++...-+
T Consensus 526 ~e~~aGadgaWVpsPtlatl 545 (721)
T TIGR01345 526 DQLRAGANTAWVPSPTAATL 545 (721)
T ss_pred hhhhcCCCccCCCCcccccH
Confidence 2578875 3444444444
No 82
>PRK14057 epimerase; Provisional
Probab=95.76 E-value=0.54 Score=45.21 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=116.5
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHhC---CCCeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCCHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAAT---GTPAILRLPESCPT-WAKKALDLGPQGVMFPMIDSPE 170 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~~---g~~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Vesae 170 (355)
+.++.+...|+|++=+|..|+-+-.. =--..+++++.. ....+|. +|. ++....++|++-|. -|+|...
T Consensus 36 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~DvHLMV~----~P~~~i~~~~~aGad~It-~H~Ea~~ 110 (254)
T PRK14057 36 RYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVA----DQWTAAQACVKAGAHCIT-LQAEGDI 110 (254)
T ss_pred HHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCeeEEeeeC----CHHHHHHHHHHhCCCEEE-Eeecccc
Confidence 45677778899999999999942111 111223333221 1123433 343 57888899998555 5778767
Q ss_pred HHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhh
Q 018508 171 AAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSAS 250 (355)
Q Consensus 171 ea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~s 250 (355)
+..+.++.+|.. |.|..++ ..+-..-+...-+| -++.++.++. .+|.|.+=+- .
T Consensus 111 ~~~~~l~~Ir~~--G~k~~~~----------------~~~~kaGlAlnP~T--p~e~i~~~l~--~vD~VLvMtV----~ 164 (254)
T PRK14057 111 HLHHTLSWLGQQ--TVPVIGG----------------EMPVIRGISLCPAT--PLDVIIPILS--DVEVIQLLAV----N 164 (254)
T ss_pred CHHHHHHHHHHc--CCCcccc----------------cccceeEEEECCCC--CHHHHHHHHH--hCCEEEEEEE----C
Confidence 777788877753 3221110 00112234444455 4667778775 5787777332 3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhCCCce---eecccCCchhHHHHHHCCCCEEEecchHHHH-HHHHHHHHHHHHHhc
Q 018508 251 MGYLWDPGHRKVREMMRVAEKGVLGGGKAY---LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLF-RSAAVEDVARFKMNL 326 (355)
Q Consensus 251 lG~~~~~~~p~v~~ai~~iv~aa~a~g~~~---~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll-~~~~~~~~~~~r~~~ 326 (355)
=|..||...|.+.+-++++.+-..++|..+ .+| ..+.+.++.+.+.|.+.++.|+- ++ ..-.++.++.+|...
T Consensus 165 PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDG-GI~~~ti~~l~~aGad~~V~GSa--lF~~~d~~~~i~~l~~~~ 241 (254)
T PRK14057 165 PGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDG-SLTQDQLPSLIAQGIDRVVSGSA--LFRDDRLVENTRSWRAMF 241 (254)
T ss_pred CCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEEC-CCCHHHHHHHHHCCCCEEEEChH--hhCCCCHHHHHHHHHHHH
Confidence 466677777777766666655555555321 111 12456788999999999999953 33 234667777777654
Q ss_pred CC
Q 018508 327 TD 328 (355)
Q Consensus 327 ~~ 328 (355)
..
T Consensus 242 ~~ 243 (254)
T PRK14057 242 KV 243 (254)
T ss_pred hh
Confidence 43
No 83
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.66 E-value=0.68 Score=43.86 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=112.6
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHhCCC----CeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCCH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAATGT----PAILRLPESCPT-WAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~~g~----~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Vesa 169 (355)
+.++.+...|+|++=+|..|+-+-.. =--..+++++. .. ..+|. +|. ++....++|++-|.+ |+|+.
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~----~P~~~i~~~~~aGad~It~-H~Ea~ 102 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVR----DQFEVAKACVAAGADIVTL-QVEQT 102 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccC----CHHHHHHHHHHhCCCEEEE-cccCc
Confidence 34577778899999999999943211 11223333321 22 23433 343 678889999996665 56766
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 170 EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 170 eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
.++.++++.++.. |. + -..-+...-+| -++.++.++. .+|.|.+=+-
T Consensus 103 ~~~~~~l~~Ik~~--g~---~--------------------~kaGlalnP~T--p~~~i~~~l~--~vD~VLiMtV---- 149 (228)
T PRK08091 103 HDLALTIEWLAKQ--KT---T--------------------VLIGLCLCPET--PISLLEPYLD--QIDLIQILTL---- 149 (228)
T ss_pred ccHHHHHHHHHHC--CC---C--------------------ceEEEEECCCC--CHHHHHHHHh--hcCEEEEEEE----
Confidence 7777777777642 10 0 01233444455 4677888875 5787777433
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCCCce---eecccCCchhHHHHHHCCCCEEEecchHHHHH-HHHHHHHHHHHHh
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGGKAY---LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFR-SAAVEDVARFKMN 325 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~---~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~-~~~~~~~~~~r~~ 325 (355)
.=|..||...|...+-+.++.+-..+++..+ .+| ..+.+.++.+.+.|.+.++.|+- ++. .-.++.++.+|..
T Consensus 150 ~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDG-GI~~~ti~~l~~aGaD~~V~GSa--lF~~~d~~~~i~~l~~~ 226 (228)
T PRK08091 150 DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDG-SMTLELASYLKQHQIDWVVSGSA--LFSQGELKTTLKEWKSS 226 (228)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEEC-CCCHHHHHHHHHCCCCEEEEChh--hhCCCCHHHHHHHHHHh
Confidence 3356677777776666666555555555331 121 12457788999999999999964 332 2356666666653
No 84
>PRK02999 malate synthase G; Provisional
Probab=95.47 E-value=0.03 Score=59.87 Aligned_cols=135 Identities=15% Similarity=0.029 Sum_probs=87.2
Q ss_pred CCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc--c
Q 018508 157 GPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--V 234 (355)
Q Consensus 157 Ga~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--v 234 (355)
|.--|..||.++++|++-..+...+. .+++.-..+.+.+.+||||..+.-|++||.. -
T Consensus 389 GsiY~ykPKmegp~Ea~fwndlF~~~--------------------E~~LGLp~gTIK~~VmiEe~ras~nL~eii~elr 448 (726)
T PRK02999 389 GSVYIVKPKMHGPEEVAFANELFGRV--------------------EDLLGLPRNTLKVGIMDEERRTSVNLKACIRAAK 448 (726)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHH--------------------HHHhCCCCCceEEEEEeeccHhHhhHHHHHHHHH
Confidence 34469999999999998666654432 1122223567999999999999999999983 3
Q ss_pred CCccEEEEChhhHHhhc-----CCC---C---CCCCHHHHHHHHHHHHH---HHhCCCceee-cccCCchhHHHH-----
Q 018508 235 DGVDCVQMGPLDLSASM-----GYL---W---DPGHRKVREMMRVAEKG---VLGGGKAYLA-GFAMPHDAPLEM----- 294 (355)
Q Consensus 235 pgVD~l~iGp~DLs~sl-----G~~---~---~~~~p~v~~ai~~iv~a---a~a~g~~~~g-~~~~d~~~a~~~----- 294 (355)
+++-+|-.|.-|...|. ... . ....|-+..--+..+.. |+..|+.-+| |++.-|.....+
T Consensus 449 ~rv~fiNtGrwDytfseIht~~~ag~~vRk~~~mt~p~m~AYe~~nV~~gL~Ch~rG~aaIGkGMwAiPd~ma~m~~dK~ 528 (726)
T PRK02999 449 DRVVFINTGFLDRTGDEIHTSMEAGPMVRKGDMKSSPWIAAYEDNNVDIGLACGLRGRAQIGKGMWAMPDLMADMLEQKI 528 (726)
T ss_pred hheeecccCchhhhhhHHHHhhhccCcCccccccccHHHHHHHHHHHHHHHhcCCCChhhhcCChhhchHHHHHHHHHHh
Confidence 78999999999988863 110 0 12233333334445666 8888877777 776655332222
Q ss_pred --HHCCCCE-EEecchHHHH
Q 018508 295 --KSRGYHM-VSGAVDVGLF 311 (355)
Q Consensus 295 --~~~G~~~-vs~~~D~~ll 311 (355)
...|++. .+.+++..-+
T Consensus 529 ~e~~aGadgaWVpsPtlatl 548 (726)
T PRK02999 529 AHPKAGANTAWVPSPTAATL 548 (726)
T ss_pred ccccCCCCccCCCCcchhhh
Confidence 2567775 3344444434
No 85
>cd00728 malate_synt_G Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=95.36 E-value=0.033 Score=59.53 Aligned_cols=139 Identities=15% Similarity=0.031 Sum_probs=90.2
Q ss_pred CCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc--c
Q 018508 157 GPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA--V 234 (355)
Q Consensus 157 Ga~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa--v 234 (355)
|.--|..||.++++|++-..+...+. .+++.-..+.+.+.+||||..+.-|++||.. -
T Consensus 381 GsiYfykPKmegp~Ea~fwndlF~~~--------------------Ed~LGLp~gTIKa~VmiEe~~asfnl~Eii~elr 440 (712)
T cd00728 381 GSIYIVKPKMHGPEEVAFANELFSRV--------------------EDLLGLPQNTIKMGIMDEERRTSVNLKECIRAAR 440 (712)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHH--------------------HHHhCCCCCceEEEEEeeccHhhhhHHHHHHHHH
Confidence 34469999999999998666654432 1222233567999999999999999999983 3
Q ss_pred CCccEEEEChhhHHhhc-----CCC-----C-CCCCHHHHHHHHHHHHH---HHhCCCceee-cccCCchhHHHH-----
Q 018508 235 DGVDCVQMGPLDLSASM-----GYL-----W-DPGHRKVREMMRVAEKG---VLGGGKAYLA-GFAMPHDAPLEM----- 294 (355)
Q Consensus 235 pgVD~l~iGp~DLs~sl-----G~~-----~-~~~~p~v~~ai~~iv~a---a~a~g~~~~g-~~~~d~~~a~~~----- 294 (355)
+++-+|-.|.-|...|. ... . ....|-+..--+..+.. |+..|+..+| |++.-|.....+
T Consensus 441 drv~fiNtGrwDytfs~I~t~~~ag~~v~k~~~m~~p~m~AYe~~nV~~gl~Ch~rG~aaIGkGMwAiPd~ma~m~~dK~ 520 (712)
T cd00728 441 DRVVFINTGFLDRTGDEIHTSMEAGPMARKADMKSSPWIGAYEDNNVDIGLAAGLSGKAQIGKGMWAMPDLMADMMEQKI 520 (712)
T ss_pred hheeecccCchhhhhhHHHHHhhCccchhhhcccccHHHHHHHHHHHHHhHhhcCCCchhhcCChhhchHHHHHHHHHHh
Confidence 78999999999988863 110 0 11233343334456666 8888887777 776655422222
Q ss_pred --HHCCCCE-EEecchHHHHHHHHH
Q 018508 295 --KSRGYHM-VSGAVDVGLFRSAAV 316 (355)
Q Consensus 295 --~~~G~~~-vs~~~D~~ll~~~~~ 316 (355)
...|++. .+.+++..-+ .++.
T Consensus 521 ~e~~aGadgaWVpsPtlatl-hafh 544 (712)
T cd00728 521 AHPKAGANTAWVPSPTAATL-HALH 544 (712)
T ss_pred ccccCCCCccCCCCCccccH-HHHH
Confidence 3578875 3444444444 4443
No 86
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=95.33 E-value=1.1 Score=40.40 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHH----HHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALA----CLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMID-SPEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~----~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-saee 171 (355)
..++.+...|.++|.+..-+. +..+... +...++..+...++ ++ .+.-+++.|++||-+|.-. ..++
T Consensus 17 ~~~~~~~~~g~~~v~lR~~~~--~~~~~~~~~~~l~~~~~~~~~~l~i--~~----~~~la~~~g~~GvHl~~~~~~~~~ 88 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDKGS--NTRERLALAEKLQELCRRYGVPFIV--ND----RVDLALALGADGVHLGQDDLPASE 88 (196)
T ss_pred HHHHHHHhcCCCEEEEecCCC--CHHHHHHHHHHHHHHHHHhCCeEEE--EC----HHHHHHHcCCCEEecCcccCCHHH
Confidence 456778889999998876543 2233222 22334455677776 22 3566788999999998432 2223
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl 251 (355)
++... . ....+.+-+-|.+-+..+. ..|+|.+++|+---+.+=
T Consensus 89 ~r~~~---~------------------------------~~~~ig~s~h~~~e~~~a~----~~g~dyi~~~~v~~t~~k 131 (196)
T TIGR00693 89 ARALL---G------------------------------PDKIIGVSTHNLEELAEAE----AEGADYIGFGPIFPTPTK 131 (196)
T ss_pred HHHhc---C------------------------------CCCEEEEeCCCHHHHHHHh----HcCCCEEEECCccCCCCC
Confidence 32221 0 1234666677775443222 248999999986221110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 252 GYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 252 G~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
.....+..+ +.+..+.+.+. +++ ..||+ +++.++.+++.|++++++++.+.
T Consensus 132 ~~~~~~~g~---~~l~~~~~~~~--~~pv~a~GGI--~~~~~~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 132 KDPAPPAGV---ELLREIAATSI--DIPIVAIGGI--TLENAAEVLAAGADGVAVVSAIM 184 (196)
T ss_pred CCCCCCCCH---HHHHHHHHhcC--CCCEEEECCc--CHHHHHHHHHcCCCEEEEhHHhh
Confidence 000011122 33333333321 233 34444 46888889999999999998764
No 87
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.21 E-value=0.03 Score=51.81 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=101.9
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhC-CC----CeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAAT-GT----PAILRLPESCPTWAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~-g~----~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesa 169 (355)
+.++.+...|+|++=+|..|+-+- ..---..+.+++.. .. ..+|.=| ..++....++|++.|.+ |+|+.
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P---~~~i~~~~~~g~~~i~~-H~E~~ 91 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENP---ERYIEEFAEAGADYITF-HAEAT 91 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSG---GGHHHHHHHHT-SEEEE-EGGGT
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccH---HHHHHHHHhcCCCEEEE-cccch
Confidence 456778889999999999999432 11112234444322 22 2354422 23688899999995554 56788
Q ss_pred HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 170 EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 170 eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
+++.++++.+|.. |. ..-+...-+| .++.++.++. .+|.|.+=+-
T Consensus 92 ~~~~~~i~~ik~~--g~-------------------------k~GialnP~T--~~~~~~~~l~--~vD~VlvMsV---- 136 (201)
T PF00834_consen 92 EDPKETIKYIKEA--GI-------------------------KAGIALNPET--PVEELEPYLD--QVDMVLVMSV---- 136 (201)
T ss_dssp TTHHHHHHHHHHT--TS-------------------------EEEEEE-TTS---GGGGTTTGC--CSSEEEEESS----
T ss_pred hCHHHHHHHHHHh--CC-------------------------CEEEEEECCC--CchHHHHHhh--hcCEEEEEEe----
Confidence 8888888888742 11 2223333455 4566777765 6898877443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc--cCCchhHHHHHHCCCCEEEecch
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF--AMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~--~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
.-|..||...|++.+-++++.+-..++|..+.-.+ ..+.+.++.+.+.|.+.+++|+-
T Consensus 137 ~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 137 EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp -TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHH
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence 34666777777777777777666666554321111 12457788999999999999953
No 88
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.21 E-value=3.4 Score=40.45 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=115.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHH-HhCCCCeEEcC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHAL-AATGTPAILRL 142 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~-~~~g~~~iVRV 142 (355)
..||+.|++++.++ .....++-.+..+..+||+.|++= +.|+ ..+.++....++.+ +....|++|=+
T Consensus 5 ~~lr~~l~~~~~~~--~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~ 82 (290)
T TIGR02321 5 QALRAALDSGRLFT--AMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADI 82 (290)
T ss_pred HHHHHHHhCCCCEE--eccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 47999999987542 222468888888899999988762 2222 23455555555443 34567777766
Q ss_pred CCC--CH----HHHHHHHhcCCCeEee-----cC-----------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC
Q 018508 143 PES--CP----TWAKKALDLGPQGVMF-----PM-----------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG 200 (355)
Q Consensus 143 ~~~--~~----~~i~~aLdaGa~GImv-----P~-----------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g 200 (355)
-.. ++ ..+++..++|+.||.+ |+ +.+.++..+-+++++.. |
T Consensus 83 d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a----~------------- 145 (290)
T TIGR02321 83 DTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA----R------------- 145 (290)
T ss_pred CCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh----C-------------
Confidence 443 11 2367888999988776 33 23444443333333321 0
Q ss_pred CCccccccCCCceEEEEEEccH-------HHHHHHHHHhccCCccEEEECh--hhHHhhcCCCCCCCCHHHHHHHHHHHH
Q 018508 201 IDEGYLSNYEEELLIMCQVESE-------EGVKRAEDIAAVDGVDCVQMGP--LDLSASMGYLWDPGHRKVREMMRVAEK 271 (355)
Q Consensus 201 ~~~~y~~~~n~~i~vi~mIET~-------~av~nieeIaavpgVD~l~iGp--~DLs~slG~~~~~~~p~v~~ai~~iv~ 271 (355)
.+.++.|++=.++. ++++.+..-++ -|-|+||+-. .| + +.+.++++
T Consensus 146 --------~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~e-AGAD~ifv~~~~~~-------------~---~ei~~~~~ 200 (290)
T TIGR02321 146 --------ADRDFVVIARVEALIAGLGQQEAVRRGQAYEE-AGADAILIHSRQKT-------------P---DEILAFVK 200 (290)
T ss_pred --------CCCCEEEEEEeccccccCCHHHHHHHHHHHHH-cCCCEEEecCCCCC-------------H---HHHHHHHH
Confidence 12235555555553 78888887775 3899999842 22 1 22333333
Q ss_pred HHHhCC-CceeecccCCch-hHHHHHHCC-CCEEEecchHHH-HHHHHHHHHHHHHH
Q 018508 272 GVLGGG-KAYLAGFAMPHD-APLEMKSRG-YHMVSGAVDVGL-FRSAAVEDVARFKM 324 (355)
Q Consensus 272 aa~a~g-~~~~g~~~~d~~-~a~~~~~~G-~~~vs~~~D~~l-l~~~~~~~~~~~r~ 324 (355)
.. .+ ++........+. ....+.++| |..+++++-... ...++++.+..++.
T Consensus 201 ~~--~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~~a~~~~~~~i~~ 255 (290)
T TIGR02321 201 SW--PGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFARIRR 255 (290)
T ss_pred hc--CCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHHHHHHHHHHHHHHHH
Confidence 32 12 122211112232 345788898 999999876532 23333444444443
No 89
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.14 E-value=2.9 Score=39.22 Aligned_cols=158 Identities=13% Similarity=0.033 Sum_probs=91.1
Q ss_pred HHHHHhhhcC-CcEEEEeCCCCCCCHHHHH----HHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHH
Q 018508 97 TLAEISGLAG-YDFVVVDMEHGPGGISDAL----ACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMID-SPE 170 (355)
Q Consensus 97 ~~~e~aa~~G-~D~vilDlEh~~~~~~~a~----~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-sae 170 (355)
..++.+...| .++|.+-.-+. +..+.. .+..-++.++...+ ||+ .+.-++..|++||=+|.-. ...
T Consensus 30 ~~l~~al~~G~v~~vQlR~K~l--~~~~~~~~a~~l~~l~~~~gv~li--INd----~~dlA~~~~adGVHLg~~d~~~~ 101 (221)
T PRK06512 30 KLLRAALQGGDVASVILPQYGL--DEATFQKQAEKLVPVIQEAGAAAL--IAG----DSRIAGRVKADGLHIEGNLAALA 101 (221)
T ss_pred HHHHHHHcCCCccEEEEeCCCC--CHHHHHHHHHHHHHHHHHhCCEEE--EeC----HHHHHHHhCCCEEEECccccCHH
Confidence 4677788889 69999975553 223333 23333455676666 454 2556788999999998642 333
Q ss_pred HHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE-EccHHHHHHHHHHhccCCccEEEEChhhHHh
Q 018508 171 AAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ-VESEEGVKRAEDIAAVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 171 ea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m-IET~~av~nieeIaavpgVD~l~iGp~DLs~ 249 (355)
++++. + | ....|++- ..+.+-+..+. -.|+|.|.|||- ++.
T Consensus 102 ~~r~~---~-----~-------------------------~~~iiG~s~~~s~~~a~~A~----~~gaDYv~~Gpv-~t~ 143 (221)
T PRK06512 102 EAIEK---H-----A-------------------------PKMIVGFGNLRDRHGAMEIG----ELRPDYLFFGKL-GAD 143 (221)
T ss_pred HHHHh---c-----C-------------------------CCCEEEecCCCCHHHHHHhh----hcCCCEEEECCC-CCC
Confidence 33332 1 0 01234443 33444333322 248999999998 442
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 250 SMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 250 slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
. -+ ..+|.-.+.+..+ ++...+++ +||+ +++.+..+++.|.+++++.+.+.
T Consensus 144 t--K~--~~~p~gl~~l~~~---~~~~~iPvvAIGGI--~~~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 144 N--KP--EAHPRNLSLAEWW---AEMIEIPCIVQAGS--DLASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred C--CC--CCCCCChHHHHHH---HHhCCCCEEEEeCC--CHHHHHHHHHhCCCEEEEhHHhh
Confidence 1 11 2344333333333 22234553 3433 67888999999999999887765
No 90
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.10 E-value=1.5 Score=41.02 Aligned_cols=163 Identities=20% Similarity=0.150 Sum_probs=98.9
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC-CHHHH
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMID-SPEAA 172 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve-saeea 172 (355)
...+|.+...|.+.+-|--.+.... ++.++.+...++.++.+.+ ||+ .+.-+++.|++||=++.-+ ..+++
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~li--INd----~~dlA~~~~AdGVHlGq~D~~~~~a 97 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLI--IND----RVDLALAVGADGVHLGQDDMPLAEA 97 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEE--ecC----cHHHHHhCCCCEEEcCCcccchHHH
Confidence 4788999999999998888777432 2444555556677888777 454 3566789999999999863 23333
Q ss_pred HHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcC
Q 018508 173 KEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMG 252 (355)
Q Consensus 173 ~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG 252 (355)
+++. . ....|+.-+-+.+-+..+++ . ++|.|.+||--=+.+
T Consensus 98 r~~~---~------------------------------~~~iIG~S~h~~eea~~A~~---~-g~DYv~~GpifpT~t-- 138 (211)
T COG0352 98 RELL---G------------------------------PGLIIGLSTHDLEEALEAEE---L-GADYVGLGPIFPTST-- 138 (211)
T ss_pred HHhc---C------------------------------CCCEEEeecCCHHHHHHHHh---c-CCCEEEECCcCCCCC--
Confidence 3222 1 12345565655544444433 2 489999998522211
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHhCC-CceeecccCCchhHHHHHHCCCCEEEecchHHH
Q 018508 253 YLWDPGHR-KVREMMRVAEKGVLGGG-KAYLAGFAMPHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 253 ~~~~~~~p-~v~~ai~~iv~aa~a~g-~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
-+++| .-.+.+. .+++.. +++.+.=..+++.+..+++-|.+++++-+.+.-
T Consensus 139 ---K~~~~~~G~~~l~----~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 139 ---KPDAPPLGLEGLR----EIRELVNIPVVAIGGINLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred ---CCCCCccCHHHHH----HHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhc
Confidence 11111 1122222 222333 443222234678899999999999999877754
No 91
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.10 E-value=0.66 Score=45.94 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-CCCCHHHHHHHHhcCCCeEee
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-PESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-~~~~~~~i~~aLdaGa~GImv 163 (355)
...++.+...|+|+|+||..|+.. +...++++.++...-.+.|.+ +-.+....+.++++|+++|++
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~--~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS--VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc--HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 356777888999999999999743 455566666654331233443 344567889999999999997
No 92
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.05 E-value=2 Score=44.06 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CCCccccccccccccccCC-CCCCCCCCCCCCCCCCCchHHHHHHHcCCcEEEEEE-ecCCHHHHHHhhhcCCcEEEEeC
Q 018508 37 NKSKIVFPKLKLTPSVSRS-PSDLSPGDPLSPSPSPSPESLKYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDM 114 (355)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~lk~~L~~G~~~~gl~v-~~~sp~~~e~aa~~G~D~vilDl 114 (355)
.+....|.++-|.|..|.- |++ ....++|-++|.-+-|++.-=+ ....++++..++..|.=.++
T Consensus 6 ~~~~ltfdDvll~P~~s~~~~~~-----------vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI--- 71 (404)
T PRK06843 6 TKEALTFDDVSLIPRKSSVLPSE-----------VSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGII--- 71 (404)
T ss_pred cccccCccceEEccCCCccCHHh-----------ccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEe---
Confidence 5566889999999997632 221 1133455555555556554332 34567777777776643333
Q ss_pred CCCCCCHHHHHHHHHHHHhCC--C--------------------------------------------------CeEEcC
Q 018508 115 EHGPGGISDALACLHALAATG--T--------------------------------------------------PAILRL 142 (355)
Q Consensus 115 Eh~~~~~~~a~~~i~a~~~~g--~--------------------------------------------------~~iVRV 142 (355)
|...+.++.++.++.++... . ...|.+
T Consensus 72 -~~~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~ 150 (404)
T PRK06843 72 -HKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSI 150 (404)
T ss_pred -cCCCCHHHHHHHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeC
Confidence 33345566666555443211 0 011222
Q ss_pred CCCCHHHHHHHHhcCCCeEee--cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 143 PESCPTWAKKALDLGPQGVMF--PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 143 ~~~~~~~i~~aLdaGa~GImv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
.......+..++++|++-|.+ -+-+ .+.+.++++.++.. ..+-..++..|-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~--------------------------~p~~~vi~g~V~ 203 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTK--------------------------YPNLDLIAGNIV 203 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhh--------------------------CCCCcEEEEecC
Confidence 211124567778888888774 3322 24444555554421 011124455899
Q ss_pred cHHHHHHHHHHhccCCccEEEEChhhHHh----h-cCCCCCCCCHHHHHHHHHHHHHHHhCCCce-eecccCCchhHHHH
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMGPLDLSA----S-MGYLWDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMPHDAPLEM 294 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iGp~DLs~----s-lG~~~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d~~~a~~~ 294 (355)
|++...++.+. |+|+|.+|-.==+. . .|. .-|.+ .++..+.+.+++.++++ ..|=..++.++.+.
T Consensus 204 T~e~a~~l~~a----GaD~I~vG~g~Gs~c~tr~~~g~----g~p~l-tai~~v~~~~~~~~vpVIAdGGI~~~~Di~KA 274 (404)
T PRK06843 204 TKEAALDLISV----GADCLKVGIGPGSICTTRIVAGV----GVPQI-TAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred CHHHHHHHHHc----CCCEEEECCCCCcCCcceeecCC----CCChH-HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 99999988873 78888876421111 0 111 11322 34444555555555553 33323456778888
Q ss_pred HHCCCCEEEecchH
Q 018508 295 KSRGYHMVSGAVDV 308 (355)
Q Consensus 295 ~~~G~~~vs~~~D~ 308 (355)
+.+|.+.|.+|+=.
T Consensus 275 LalGA~aVmvGs~~ 288 (404)
T PRK06843 275 IAAGADSVMIGNLF 288 (404)
T ss_pred HHcCCCEEEEccee
Confidence 89999999988643
No 93
>PRK08005 epimerase; Validated
Probab=94.99 E-value=0.67 Score=43.32 Aligned_cols=168 Identities=11% Similarity=0.008 Sum_probs=98.3
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHh-CCC----CeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCC
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAA-TGT----PAILRLPESCPT-WAKKALDLGPQGVMFPMIDS 168 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~-~g~----~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Ves 168 (355)
+.++.+...|+|++=+|..|+-+-.. =--..+++++. ... ..+|. +|. ++....++|++-|. -|+|+
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~----~P~~~i~~~~~~gad~It-~H~Ea 91 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVS----SPQRWLPWLAAIRPGWIF-IHAES 91 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccC----CHHHHHHHHHHhCCCEEE-EcccC
Confidence 34577788899999999999943211 11123333332 222 23333 343 67888999998554 56786
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHH
Q 018508 169 PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLS 248 (355)
Q Consensus 169 aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs 248 (355)
.....++++.+|.. |. ..-+...-+| -++.++.++. .+|.|.+=+-
T Consensus 92 ~~~~~~~l~~Ik~~--G~-------------------------k~GlAlnP~T--p~~~i~~~l~--~vD~VlvMsV--- 137 (210)
T PRK08005 92 VQNPSEILADIRAI--GA-------------------------KAGLALNPAT--PLLPYRYLAL--QLDALMIMTS--- 137 (210)
T ss_pred ccCHHHHHHHHHHc--CC-------------------------cEEEEECCCC--CHHHHHHHHH--hcCEEEEEEe---
Confidence 67777777777642 21 2233444455 3566666664 5777776332
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecc
Q 018508 249 ASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 249 ~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
.=|..||...|.+.+-++++.+-..+..+.+=|| .+.+.++.+.+.|.+.+++|+
T Consensus 138 -~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGG--I~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 138 -EPDGRGQQFIAAMCEKVSQSREHFPAAECWADGG--ITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred -cCCCccceecHHHHHHHHHHHHhcccCCEEEECC--CCHHHHHHHHHCCCCEEEECh
Confidence 3455566666665555544432221111112222 245778899999999999995
No 94
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.98 E-value=1.3 Score=42.02 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=113.6
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHH--HHHHHHHHHHh-CCC----CeEEcCCCCCHH-HHHHHHhcCCCeEeecCCCCH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGIS--DALACLHALAA-TGT----PAILRLPESCPT-WAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~--~a~~~i~a~~~-~g~----~~iVRV~~~~~~-~i~~aLdaGa~GImvP~Vesa 169 (355)
.++.+.. |+|++=+|..|+-+-.. =--..+++++. ... ..+|. +|. ++....++|++-|.+ |+|..
T Consensus 20 el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~----~P~~~i~~~~~aGad~it~-H~Ea~ 93 (229)
T PRK09722 20 QIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVT----DPQDYIDQLADAGADFITL-HPETI 93 (229)
T ss_pred HHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEec----CHHHHHHHHHHcCCCEEEE-CccCC
Confidence 3455655 89999999999942111 11123344432 222 34555 243 678889999997766 55743
Q ss_pred -HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHH
Q 018508 170 -EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLS 248 (355)
Q Consensus 170 -eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs 248 (355)
.+..++++.+|.. |. ..-+...-+|+ ++.++.++. .+|.|.+=+-
T Consensus 94 ~~~~~~~i~~Ik~~--G~-------------------------kaGlalnP~T~--~~~l~~~l~--~vD~VLvMsV--- 139 (229)
T PRK09722 94 NGQAFRLIDEIRRA--GM-------------------------KVGLVLNPETP--VESIKYYIH--LLDKITVMTV--- 139 (229)
T ss_pred cchHHHHHHHHHHc--CC-------------------------CEEEEeCCCCC--HHHHHHHHH--hcCEEEEEEE---
Confidence 5677777777642 21 23344455564 577788885 5787776433
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc--cCCchhHHHHHHCCCCEEEecchHHHH-HHHHHHHHHHHHHh
Q 018508 249 ASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF--AMPHDAPLEMKSRGYHMVSGAVDVGLF-RSAAVEDVARFKMN 325 (355)
Q Consensus 249 ~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~--~~d~~~a~~~~~~G~~~vs~~~D~~ll-~~~~~~~~~~~r~~ 325 (355)
.=|..||...|...+-+.++.+-..+++..+.-.+ ..+.+.+..+.+.|.+.+++|+-..+- ..-.++.++.+|..
T Consensus 140 -~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~ 218 (229)
T PRK09722 140 -DPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQ 218 (229)
T ss_pred -cCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHH
Confidence 34666777777777777666655555553321111 123567888999999999998643332 12366777777764
Q ss_pred c
Q 018508 326 L 326 (355)
Q Consensus 326 ~ 326 (355)
.
T Consensus 219 ~ 219 (229)
T PRK09722 219 I 219 (229)
T ss_pred H
Confidence 3
No 95
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.92 E-value=0.31 Score=44.35 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccH-
Q 018508 144 ESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESE- 222 (355)
Q Consensus 144 ~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~- 222 (355)
+.....+.++.++|++.|.++...+...+.++++.++.. | +.+++-+=++
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~--g---------------------------~~~~~~~~~~~ 113 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKH--G---------------------------KEVQVDLINVK 113 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc--C---------------------------CEEEEEecCCC
Confidence 444446899999999999988776656677777777531 1 2333332111
Q ss_pred HHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEE
Q 018508 223 EGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMV 302 (355)
Q Consensus 223 ~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~v 302 (355)
.-++.+...... |+|.+.+.| |..++...+.....+.++......--..+.||+ +++.+..+++.|++.+
T Consensus 114 t~~~~~~~~~~~-g~d~v~~~p-------g~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI--~~~n~~~~~~~Ga~~v 183 (206)
T TIGR03128 114 DKVKRAKELKEL-GADYIGVHT-------GLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI--NLDTIPDVIKLGPDIV 183 (206)
T ss_pred ChHHHHHHHHHc-CCCEEEEcC-------CcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc--CHHHHHHHHHcCCCEE
Confidence 122333333333 789887765 221111111111222222222111111124544 5677889999999999
Q ss_pred EecchHHHHHHHHHHHHHHHHH
Q 018508 303 SGAVDVGLFRSAAVEDVARFKM 324 (355)
Q Consensus 303 s~~~D~~ll~~~~~~~~~~~r~ 324 (355)
++|+...- ..-.++.+..+|.
T Consensus 184 ~vGsai~~-~~d~~~~~~~l~~ 204 (206)
T TIGR03128 184 IVGGAITK-AADPAEAARQIRK 204 (206)
T ss_pred EEeehhcC-CCCHHHHHHHHHh
Confidence 99977421 1224455555554
No 96
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.86 E-value=0.62 Score=43.36 Aligned_cols=117 Identities=24% Similarity=0.204 Sum_probs=72.2
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHH----HHHHHHHHHHhCCCCeEEcCCC--------CCHHHHH----HHHhcCCCeE
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGIS----DALACLHALAATGTPAILRLPE--------SCPTWAK----KALDLGPQGV 161 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~----~a~~~i~a~~~~g~~~iVRV~~--------~~~~~i~----~aLdaGa~GI 161 (355)
.++.+...|+|.|.+-+--+..+.. .+.+....++..+.+.+|=+.. .....+. .+.++|+|.|
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~I 160 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIV 160 (235)
T ss_pred CHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEE
Confidence 3677788899887554433332222 2233344455678887763321 1234443 4778999999
Q ss_pred eecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE--EEccHH-HHHHHHHHhccCCcc
Q 018508 162 MFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC--QVESEE-GVKRAEDIAAVDGVD 238 (355)
Q Consensus 162 mvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~--mIET~~-av~nieeIaavpgVD 238 (355)
-++...+.+.++++++.+.-| +.+.. .+.|++ .++|+.++.+ -|++
T Consensus 161 k~~~~~~~~~~~~i~~~~~~p------------------------------vv~~GG~~~~~~~~~l~~~~~~~~-~Ga~ 209 (235)
T cd00958 161 KTKYTGDAESFKEVVEGCPVP------------------------------VVIAGGPKKDSEEEFLKMVYDAME-AGAA 209 (235)
T ss_pred EecCCCCHHHHHHHHhcCCCC------------------------------EEEeCCCCCCCHHHHHHHHHHHHH-cCCc
Confidence 998877778888887765321 11111 123433 6788888887 3899
Q ss_pred EEEEChh
Q 018508 239 CVQMGPL 245 (355)
Q Consensus 239 ~l~iGp~ 245 (355)
++.+|++
T Consensus 210 gv~vg~~ 216 (235)
T cd00958 210 GVAVGRN 216 (235)
T ss_pred EEEechh
Confidence 9999998
No 97
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.82 E-value=0.78 Score=48.27 Aligned_cols=79 Identities=19% Similarity=0.108 Sum_probs=53.8
Q ss_pred cCCcEEEEEEec--CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CC-CCeEEcCCCCCHHHHHHHHhcC
Q 018508 82 SNETLYGLFLLS--FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TG-TPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~--~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g-~~~iVRV~~~~~~~i~~aLdaG 157 (355)
.|+-.+|.-+.. ...+.++.+..+|+|+|+||.-|+-. ....++++.++. .+ ..+++ =|-......+++.++|
T Consensus 234 ~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~--~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aG 310 (505)
T PLN02274 234 DGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDS--IYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAG 310 (505)
T ss_pred CCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCc--HHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcC
Confidence 456667777765 44688999999999999999988742 222234444433 22 33332 2334577889999999
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+|+|.+
T Consensus 311 aD~i~v 316 (505)
T PLN02274 311 VDGLRV 316 (505)
T ss_pred cCEEEE
Confidence 999987
No 98
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.67 E-value=0.66 Score=44.03 Aligned_cols=119 Identities=19% Similarity=0.167 Sum_probs=76.7
Q ss_pred HHHHhhhcCCcEEEEeCCCC-----------CCCHHHHHHHHHHHH---h--CCCCeEEcCCC-----CCH-HH---HHH
Q 018508 98 LAEISGLAGYDFVVVDMEHG-----------PGGISDALACLHALA---A--TGTPAILRLPE-----SCP-TW---AKK 152 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~-----------~~~~~~a~~~i~a~~---~--~g~~~iVRV~~-----~~~-~~---i~~ 152 (355)
.++.+...|++.|.|.=+.. ..+.++....|+++. . ....++.|+.. ... +. .++
T Consensus 89 ~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~a 168 (243)
T cd00377 89 TVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHH
Confidence 46677789999999832221 235666666666543 2 25678899332 121 22 466
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHh
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIA 232 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIa 232 (355)
..++|||+|++|...+.++++++.+...-| .++.+.+... ...++++.
T Consensus 169 y~~AGAD~v~v~~~~~~~~~~~~~~~~~~P-------------------------------l~~~~~~~~~-~~~~~~l~ 216 (243)
T cd00377 169 YAEAGADGIFVEGLKDPEEIRAFAEAPDVP-------------------------------LNVNMTPGGN-LLTVAELA 216 (243)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHhcCCCC-------------------------------EEEEecCCCC-CCCHHHHH
Confidence 789999999999999999999998874311 1122222211 35677777
Q ss_pred ccCCccEEEEChhhHHh
Q 018508 233 AVDGVDCVQMGPLDLSA 249 (355)
Q Consensus 233 avpgVD~l~iGp~DLs~ 249 (355)
+. |+..+++|+.=+..
T Consensus 217 ~l-G~~~v~~~~~~~~~ 232 (243)
T cd00377 217 EL-GVRRVSYGLALLRA 232 (243)
T ss_pred HC-CCeEEEEChHHHHH
Confidence 66 89999999874443
No 99
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.66 E-value=0.85 Score=41.10 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=75.5
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE---E
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM---C 217 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi---~ 217 (355)
.+.......+..+.++|+++|.+|...+.+.+..+++.++.. | +.++ +
T Consensus 61 ~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~--g---------------------------~~~~v~~~ 111 (202)
T cd04726 61 KTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY--G---------------------------KEVQVDLI 111 (202)
T ss_pred EeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc--C---------------------------CeEEEEEe
Confidence 344444456788999999999999877777788888887631 1 1222 4
Q ss_pred EEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHH
Q 018508 218 QVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMK 295 (355)
Q Consensus 218 mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~ 295 (355)
-.+|+.-+.. +.. .++|.+.++++=-....| . +...+.++++.+. ...+ +.||+ +++.+..++
T Consensus 112 ~~~t~~e~~~---~~~-~~~d~v~~~~~~~~~~~~---~---~~~~~~i~~~~~~---~~~~i~~~GGI--~~~~i~~~~ 176 (202)
T cd04726 112 GVEDPEKRAK---LLK-LGVDIVILHRGIDAQAAG---G---WWPEDDLKKVKKL---LGVKVAVAGGI--TPDTLPEFK 176 (202)
T ss_pred CCCCHHHHHH---HHH-CCCCEEEEcCcccccccC---C---CCCHHHHHHHHhh---cCCCEEEECCc--CHHHHHHHH
Confidence 4566665543 222 378988887541111222 1 1122333333322 2333 34444 478899999
Q ss_pred HCCCCEEEecchH
Q 018508 296 SRGYHMVSGAVDV 308 (355)
Q Consensus 296 ~~G~~~vs~~~D~ 308 (355)
+.|.+.+.+|+-.
T Consensus 177 ~~Gad~vvvGsai 189 (202)
T cd04726 177 KAGADIVIVGRAI 189 (202)
T ss_pred hcCCCEEEEeehh
Confidence 9999999999764
No 100
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.65 E-value=1.3 Score=44.72 Aligned_cols=150 Identities=12% Similarity=0.095 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCeEEcCCCCCH-HHHHHHHhcCCCeEeec-CC---------CCHHHHHHHHHHcCCCCCCC
Q 018508 118 PGGISDALACLHALAATGTPAILRLPESCP-TWAKKALDLGPQGVMFP-MI---------DSPEAAKEAVSYCRFPPSGV 186 (355)
Q Consensus 118 ~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-~~i~~aLdaGa~GImvP-~V---------esaeea~~vv~a~~~pP~G~ 186 (355)
+.+.+.+.++++++...+..+-+|+..... +.++.+.++|++.|.+= -+ ..+.++.++++.+
T Consensus 115 ~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~------- 187 (369)
T TIGR01304 115 PLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL------- 187 (369)
T ss_pred ccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC-------
Confidence 356677788888887777888999965444 34677889999988762 11 1233333333221
Q ss_pred CCCcccccccccCCCCccccccCCCceEEEE-EEccHHHHHHHHHHhccCCccEEEEChhhHHh---hcCCCCCCCCHHH
Q 018508 187 RGSAHTVVRASGYGIDEGYLSNYEEELLIMC-QVESEEGVKRAEDIAAVDGVDCVQMGPLDLSA---SMGYLWDPGHRKV 262 (355)
Q Consensus 187 Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~-mIET~~av~nieeIaavpgVD~l~iGp~DLs~---slG~~~~~~~p~v 262 (355)
.+.|++ .|-|.+-...+-+ + |+|+|++|+.=-.. .+| ...| .
T Consensus 188 -------------------------~IPVI~G~V~t~e~A~~~~~-a---GaDgV~~G~gg~~~~~~~lg----~~~p-~ 233 (369)
T TIGR01304 188 -------------------------DVPVIAGGVNDYTTALHLMR-T---GAAGVIVGPGGANTTRLVLG----IEVP-M 233 (369)
T ss_pred -------------------------CCCEEEeCCCCHHHHHHHHH-c---CCCEEEECCCCCcccccccC----CCCC-H
Confidence 234444 6777777666555 2 89999988643211 222 1122 2
Q ss_pred HHHHHHHHHHHHh----CC---Cce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 263 REMMRVAEKGVLG----GG---KAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 263 ~~ai~~iv~aa~a----~g---~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
..++.++..+.+. .| +++ -|++ .+..++.+.+.+|.+.+.+|+=..
T Consensus 234 ~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI-~tg~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 234 ATAIADVAAARRDYLDETGGRYVHVIADGGI-ETSGDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEeCCC-CCHHHHHHHHHcCCCEeeeHHHHH
Confidence 2344444433332 22 332 2333 345677778899999999986443
No 101
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.62 E-value=0.48 Score=46.43 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=86.5
Q ss_pred HHHHhhhcCCcEEEE-eC------CCC----CCCHHHHHHHHHHHHhC----CCCeEEcCCCCCH----HHH---HHHHh
Q 018508 98 LAEISGLAGYDFVVV-DM------EHG----PGGISDALACLHALAAT----GTPAILRLPESCP----TWA---KKALD 155 (355)
Q Consensus 98 ~~e~aa~~G~D~vil-Dl------Eh~----~~~~~~a~~~i~a~~~~----g~~~iVRV~~~~~----~~i---~~aLd 155 (355)
.++.+..+|+-.|.| |- -|. ..+.+++..-|+++... ...++.|+..... +.| ++.++
T Consensus 98 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~e 177 (292)
T PRK11320 98 TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVE 177 (292)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHH
Confidence 467888899988877 42 122 23566666667665432 2345678766421 234 44678
Q ss_pred cCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHH-HHHHHHHHhcc
Q 018508 156 LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEE-GVKRAEDIAAV 234 (355)
Q Consensus 156 aGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~-av~nieeIaav 234 (355)
+|||+|.+|-..+.++++++.+.+.-| ++.-+++-.. .+..++++.+.
T Consensus 178 AGAD~ifi~~~~~~~~i~~~~~~~~~P-------------------------------l~~n~~~~~~~p~~s~~~L~~l 226 (292)
T PRK11320 178 AGADMIFPEAMTELEMYRRFADAVKVP-------------------------------ILANITEFGATPLFTTEELASA 226 (292)
T ss_pred cCCCEEEecCCCCHHHHHHHHHhcCCC-------------------------------EEEEeccCCCCCCCCHHHHHHc
Confidence 999999999999999999999977532 1222333221 23357777766
Q ss_pred CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 018508 235 DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGK 278 (355)
Q Consensus 235 pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~ 278 (355)
|+..+++|+.=+... ..++.++....++.|.
T Consensus 227 -Gv~~v~~~~~~~~aa------------~~a~~~~~~~l~~~g~ 257 (292)
T PRK11320 227 -GVAMVLYPLSAFRAM------------NKAAENVYEAIRRDGT 257 (292)
T ss_pred -CCcEEEEChHHHHHH------------HHHHHHHHHHHHHcCC
Confidence 899999998744333 3444555555555553
No 102
>PRK04302 triosephosphate isomerase; Provisional
Probab=94.61 E-value=0.64 Score=43.29 Aligned_cols=123 Identities=18% Similarity=0.088 Sum_probs=73.6
Q ss_pred HHHHHhcCCCeEeecCC---CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHH
Q 018508 150 AKKALDLGPQGVMFPMI---DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVK 226 (355)
Q Consensus 150 i~~aLdaGa~GImvP~V---esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ 226 (355)
+..+.++|+++|++|+- ...+++++.++.++.. .+.++..+-+ .+
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~-----------------------------Gl~~I~~v~~---~~ 125 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL-----------------------------GLESVVCVNN---PE 125 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC-----------------------------CCeEEEEcCC---HH
Confidence 66778899999999996 5667777777766521 1233344444 34
Q ss_pred HHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhC--CCcee-ecccCCchhHHHHHHCCCCEEE
Q 018508 227 RAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGG--GKAYL-AGFAMPHDAPLEMKSRGYHMVS 303 (355)
Q Consensus 227 nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~--g~~~~-g~~~~d~~~a~~~~~~G~~~vs 303 (355)
++..+... +.|.|.+.|-++. ..|...+...|+. +.++++..++. +.+++ |+-..+++.++.+.+.|++.+.
T Consensus 126 ~~~~~~~~-~~~~I~~~p~~~i-gt~~~~~~~~~~~---i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvl 200 (223)
T PRK04302 126 TSAAAAAL-GPDYVAVEPPELI-GTGIPVSKAKPEV---VEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVL 200 (223)
T ss_pred HHHHHhcC-CCCEEEEeCcccc-ccCCCCCcCCHHH---HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEE
Confidence 55555543 5688888886653 1222111122332 33444444432 34433 3333467888889999999999
Q ss_pred ecchHH
Q 018508 304 GAVDVG 309 (355)
Q Consensus 304 ~~~D~~ 309 (355)
+|+-..
T Consensus 201 VGsa~l 206 (223)
T PRK04302 201 LASGVV 206 (223)
T ss_pred EehHHh
Confidence 987654
No 103
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.53 E-value=4.9 Score=38.97 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=110.7
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH------HHHHhhhcCCcEEEEeCCCC-C-CCHH-----------------HHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT------LAEISGLAGYDFVVVDMEHG-P-GGIS-----------------DALACL 128 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~------~~e~aa~~G~D~vilDlEh~-~-~~~~-----------------~a~~~i 128 (355)
..|++.-+.++..+-.|+.++.|. .+..+...|+|++=|-.--+ | .|-. ...+++
T Consensus 6 ~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~ 85 (265)
T COG0159 6 QKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELV 85 (265)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 456666677888888898887653 33445678999988776555 2 1211 112233
Q ss_pred HHHHhCC-CCeEEc---CCCCC----HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC
Q 018508 129 HALAATG-TPAILR---LPESC----PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG 200 (355)
Q Consensus 129 ~a~~~~g-~~~iVR---V~~~~----~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g 200 (355)
..++..+ ..|+|= -|..- ...++++.+.|++|+++|-.- .|+...+...++. +|
T Consensus 86 ~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP-~ee~~~~~~~~~~-----------------~g 147 (265)
T COG0159 86 EEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP-PEESDELLKAAEK-----------------HG 147 (265)
T ss_pred HHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHHHHHH-----------------cC
Confidence 3343222 222221 12211 123678999999999999974 5666677776652 11
Q ss_pred CCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhC-CCc
Q 018508 201 IDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGG-GKA 279 (355)
Q Consensus 201 ~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~-g~~ 279 (355)
. +.+.+++--=+. +.++.|++.. =.+++..+ .+|..|.... +...+.+.++..|+. .++
T Consensus 148 i---------~~I~lvaPtt~~---~rl~~i~~~a-~GFiY~vs-----~~GvTG~~~~--~~~~~~~~v~~vr~~~~~P 207 (265)
T COG0159 148 I---------DPIFLVAPTTPD---ERLKKIAEAA-SGFIYYVS-----RMGVTGARNP--VSADVKELVKRVRKYTDVP 207 (265)
T ss_pred C---------cEEEEeCCCCCH---HHHHHHHHhC-CCcEEEEe-----cccccCCCcc--cchhHHHHHHHHHHhcCCC
Confidence 1 123444433343 4555555421 12444322 2355553321 111134444455543 455
Q ss_pred eeecccC-CchhHHHHHHCCCCEEEecchHHH
Q 018508 280 YLAGFAM-PHDAPLEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 280 ~~g~~~~-d~~~a~~~~~~G~~~vs~~~D~~l 310 (355)
.+.|+.- +++++++..+. .+++.+|+-++=
T Consensus 208 v~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 208 VLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred eEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 6666644 57899999999 999999987763
No 104
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.50 E-value=2.4 Score=37.27 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=38.3
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC-CCCeEEcCCCCC----HH----HHHHHHhcCCCeEee
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT-GTPAILRLPESC----PT----WAKKALDLGPQGVMF 163 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~-g~~~iVRV~~~~----~~----~i~~aLdaGa~GImv 163 (355)
.++.+...|.|.|++-. +.++...... .. ..++++.+.... .. .++++.++|+++|++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------~~i~~~~~~~-~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------GYVRLAADAL-AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------HHHHHHHHHh-CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 45666778888888775 2222222222 22 477889998876 32 467899999999987
No 105
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.41 E-value=1.1 Score=40.57 Aligned_cols=152 Identities=19% Similarity=0.172 Sum_probs=87.2
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcC-CCCCHHHHHHHHhcCCCeEeecCCCCHHHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRL-PESCPTWAKKALDLGPQGVMFPMIDSPEAAKE 174 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV-~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~ 174 (355)
..++.+...|+++|-+++.... ....++.+.. .+ .+.|=. +-.+...+..++++|+++|+.|... .+
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~~-----~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~--~~--- 88 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTPG-----ALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPGLD--PE--- 88 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCChh-----HHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCC--HH---
Confidence 4567888899999999987542 3334444432 22 111111 1234678999999999999999754 22
Q ss_pred HHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC
Q 018508 175 AVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254 (355)
Q Consensus 175 vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~ 254 (355)
++++++.. ...+++-+.|++=+..+.+ -|.|.+-+-|.
T Consensus 89 ~~~~~~~~-----------------------------~~~~i~gv~t~~e~~~A~~----~Gad~i~~~p~--------- 126 (190)
T cd00452 89 VVKAANRA-----------------------------GIPLLPGVATPTEIMQALE----LGADIVKLFPA--------- 126 (190)
T ss_pred HHHHHHHc-----------------------------CCcEECCcCCHHHHHHHHH----CCCCEEEEcCC---------
Confidence 33333311 1223444445544333322 37888887441
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 255 WDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 255 ~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
.+..++.. +.+.... .+.+ +.||+ +++.+..+++.|+..+++++.+.
T Consensus 127 -~~~g~~~~---~~l~~~~--~~~p~~a~GGI--~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 127 -EAVGPAYI---KALKGPF--PQVRFMPTGGV--SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred -cccCHHHH---HHHHhhC--CCCeEEEeCCC--CHHHHHHHHHCCCEEEEEchhcc
Confidence 11233333 2221111 1233 34554 67889999999999999988764
No 106
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.39 E-value=2.3 Score=38.59 Aligned_cols=64 Identities=22% Similarity=0.110 Sum_probs=47.5
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-CCCCH-HHHHHHHhcCCCeEeec
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-PESCP-TWAKKALDLGPQGVMFP 164 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-~~~~~-~~i~~aLdaGa~GImvP 164 (355)
.++.+..+|+|+|++..|..+ .+..+++..++..|..+++=+ +...+ ..+..+++.|++.|.++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~---~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD---ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH---HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 589999999999999998643 344556666777888888875 33333 56777888899988664
No 107
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.37 E-value=4.8 Score=38.23 Aligned_cols=194 Identities=18% Similarity=0.222 Sum_probs=108.1
Q ss_pred HHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHH-HhCCCCeEEcCCC
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHAL-AATGTPAILRLPE 144 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~-~~~g~~~iVRV~~ 144 (355)
||+..+.+++++. .+..++..+..+..+||+.+++- ..|. ..+.++....++.+ +....|++|=+-.
T Consensus 1 fr~L~~~~~~l~~--p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~ 78 (238)
T PF13714_consen 1 FRQLHEPGKPLVL--PNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADT 78 (238)
T ss_dssp HHHHHHSSSSEEE--EEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TT
T ss_pred ChhhhcCCCcEEe--CCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEccc
Confidence 6773344476443 34568888888888899999874 2221 24556666555544 4567788777654
Q ss_pred C--C-HH----HHHHHHhcCCCeEeecCC--C-------CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCcccccc
Q 018508 145 S--C-PT----WAKKALDLGPQGVMFPMI--D-------SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSN 208 (355)
Q Consensus 145 ~--~-~~----~i~~aLdaGa~GImvP~V--e-------saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~ 208 (355)
. + +. .+++..++|+.||.+=-- . +.++...=+++++.. .
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a-------------------------~ 133 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDA-------------------------R 133 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHH-------------------------H
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHh-------------------------c
Confidence 3 2 33 367788999999988543 1 444443333332210 0
Q ss_pred CCCceEEEEEEcc--------HHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce
Q 018508 209 YEEELLIMCQVES--------EEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 209 ~n~~i~vi~mIET--------~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
.+..+.|++=.++ -++++.+....+ -|.|+||+=.- ... +-++++.+.. +.+.
T Consensus 134 ~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~e-AGAD~ifi~~~------------~~~---~~i~~~~~~~---~~Pl 194 (238)
T PF13714_consen 134 RDPDFVIIARTDAFLRAEEGLDEAIERAKAYAE-AGADMIFIPGL------------QSE---EEIERIVKAV---DGPL 194 (238)
T ss_dssp SSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHH-TT-SEEEETTS------------SSH---HHHHHHHHHH---SSEE
T ss_pred cCCeEEEEEeccccccCCCCHHHHHHHHHHHHH-cCCCEEEeCCC------------CCH---HHHHHHHHhc---CCCE
Confidence 1223788888888 455666666654 49999997321 111 1134444444 3443
Q ss_pred eecccCCchhHHHHHHCCCCEEEecchHHHHHHHHHH
Q 018508 281 LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRSAAVE 317 (355)
Q Consensus 281 ~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~~~ 317 (355)
........-..+++.++||+.++++.-. ++.++..
T Consensus 195 ~v~~~~~~~~~~eL~~lGv~~v~~~~~~--~~aa~~a 229 (238)
T PF13714_consen 195 NVNPGPGTLSAEELAELGVKRVSYGNSL--LRAAMKA 229 (238)
T ss_dssp EEETTSSSS-HHHHHHTTESEEEETSHH--HHHHHHH
T ss_pred EEEcCCCCCCHHHHHHCCCcEEEEcHHH--HHHHHHH
Confidence 2222222245788999999999999765 4444433
No 108
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.18 E-value=3.6 Score=38.24 Aligned_cols=170 Identities=10% Similarity=0.067 Sum_probs=96.8
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHH----HHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALA----CLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~----~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
++|.-.+....++.+...|.++|.|-.-+.. .++... ++.-++..+...+| |+ .+.-++..|++||=+
T Consensus 14 ~ly~i~~~~~~l~~~l~~G~~~vqLR~k~~~--~~~~~~la~~l~~~~~~~~~~liI--nd----~~~lA~~~~adGVHl 85 (211)
T PRK03512 14 GLYPVVDSVQWIERLLDAGVRTLQLRIKDRR--DEEVEADVVAAIALGRRYQARLFI--ND----YWRLAIKHQAYGVHL 85 (211)
T ss_pred eEEEEECCHHHHHHHHhCCCCEEEEcCCCCC--HHHHHHHHHHHHHHHHHhCCeEEE--eC----HHHHHHHcCCCEEEc
Confidence 4665555556799999999999999866643 333332 23334556666664 33 245577789999988
Q ss_pred cCCCC-HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEE
Q 018508 164 PMIDS-PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQM 242 (355)
Q Consensus 164 P~Ves-aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~i 242 (355)
+.-+- +.+++++ + + ....+.+.+.+.+-+..+++ .|+|.+++
T Consensus 86 g~~d~~~~~~r~~---~--~----------------------------~~~~iG~S~H~~~e~~~A~~----~gaDYi~l 128 (211)
T PRK03512 86 GQEDLETADLNAI---R--A----------------------------AGLRLGVSTHDDMEIDVALA----ARPSYIAL 128 (211)
T ss_pred ChHhCCHHHHHHh---c--C----------------------------CCCEEEEeCCCHHHHHHHhh----cCCCEEEE
Confidence 75322 1223221 1 1 12356777777765544432 48999999
Q ss_pred ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 243 GPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 243 Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
||- +... .-++ ...+.-.+.+.++.+.. ..+++ +||+ +.+.+..+++.|+.++++.+...
T Consensus 129 gpv-f~T~-tK~~-~~~~~G~~~l~~~~~~~--~~~PV~AiGGI--~~~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 129 GHV-FPTQ-TKQM-PSAPQGLAQLARHVERL--ADYPTVAIGGI--SLERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred CCc-cCCC-CCCC-CCCCCCHHHHHHHHHhc--CCCCEEEECCC--CHHHHHHHHHcCCCEEEEhhHhh
Confidence 996 2111 1111 01111112223322221 23443 3333 56788888999999999988764
No 109
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.06 E-value=4.7 Score=39.41 Aligned_cols=209 Identities=16% Similarity=0.162 Sum_probs=115.3
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCC--CCCHHHHHHHHHH-HHhCCCCeEEcCCCC-
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHG--PGGISDALACLHA-LAATGTPAILRLPES- 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~--~~~~~~a~~~i~a-~~~~g~~~iVRV~~~- 145 (355)
+.+-+..+++...++.|. ..+.+ .++.+-..+...|+--.+.. -...+.+..+++. ++....|+.|=....
T Consensus 7 k~ll~~A~~~~yaV~AfN-~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~ 85 (283)
T PRK07998 7 RILLDRIQEKHVLAGAFN-TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGK 85 (283)
T ss_pred HHHHHHHHHCCCEEEEEe-eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCC
Confidence 344455566778888874 44444 34555566777555332221 1345556666654 356778888777655
Q ss_pred CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccC-CCceEEEEEE
Q 018508 146 CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNY-EEELLIMCQV 219 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~-n~~i~vi~mI 219 (355)
+.+.+.+++++|...||+ |.-++.+..+++++.++-. | ..- -.-.|. +... ++...-....
T Consensus 86 ~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~--g---v~V----EaElG~----vgg~ed~~~~~~~~~ 152 (283)
T PRK07998 86 TFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSY--G---VPV----EAELGA----ILGKEDDHVSEADCK 152 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc--C---CEE----EEEecc----CCCcccccccccccc
Confidence 456899999999999998 7777888888999888631 1 110 000111 1000 0000000112
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC-CCCCCHHH-HHHHHHHHHHHHhCCCce--eecccCCchhHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL-WDPGHRKV-REMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMK 295 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~-~~~~~p~v-~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~ 295 (355)
-+| +.+.++++--|+|.|-+ ++|.- |....|.+ .+.++++.++. +++. =|+-..+.++.++.+
T Consensus 153 T~p---e~a~~Fv~~TgvD~LAv-------aiGt~HG~Y~~p~l~~~~l~~I~~~~---~vPLVlHGgSG~~~e~~~~ai 219 (283)
T PRK07998 153 TEP---EKVKDFVERTGCDMLAV-------SIGNVHGLEDIPRIDIPLLKRIAEVS---PVPLVIHGGSGIPPEILRSFV 219 (283)
T ss_pred CCH---HHHHHHHHHhCcCeeeh-------hccccccCCCCCCcCHHHHHHHHhhC---CCCEEEeCCCCCCHHHHHHHH
Confidence 233 44466665457886543 33321 11111333 34455554432 3331 222233347788999
Q ss_pred HCCCCEEEecchHH
Q 018508 296 SRGYHMVSGAVDVG 309 (355)
Q Consensus 296 ~~G~~~vs~~~D~~ 309 (355)
+.|...+.+++|..
T Consensus 220 ~~Gi~KiNi~Tel~ 233 (283)
T PRK07998 220 NYKVAKVNIASDLR 233 (283)
T ss_pred HcCCcEEEECHHHH
Confidence 99999999999963
No 110
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.85 E-value=1.7 Score=42.61 Aligned_cols=121 Identities=12% Similarity=0.066 Sum_probs=78.6
Q ss_pred HHHHhhhcCCcEEEEeCCCCC-----------CCHHHHHHHHHHHHhC----CCCeEEcCCCCCH----HHH---HHHHh
Q 018508 98 LAEISGLAGYDFVVVDMEHGP-----------GGISDALACLHALAAT----GTPAILRLPESCP----TWA---KKALD 155 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~-----------~~~~~a~~~i~a~~~~----g~~~iVRV~~~~~----~~i---~~aLd 155 (355)
.++.+..+|+-.|.|.=+..| .+.+++..-|+++... ...++.|+..... +.| ++..+
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e 176 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA 176 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence 468888999988877333222 3556666666665432 2445678765421 234 44578
Q ss_pred cCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc-HHHHHHHHHHhcc
Q 018508 156 LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES-EEGVKRAEDIAAV 234 (355)
Q Consensus 156 aGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET-~~av~nieeIaav 234 (355)
+|||+|.+|-..+.++++++++.+..| .+.=+++. .....+++++.+.
T Consensus 177 AGAD~ifi~~~~~~~ei~~~~~~~~~P-------------------------------~~~nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 177 AGADCIFLEAMLDVEEMKRVRDEIDAP-------------------------------LLANMVEGGKTPWLTTKELESI 225 (294)
T ss_pred hCCCEEEecCCCCHHHHHHHHHhcCCC-------------------------------eeEEEEecCCCCCCCHHHHHHc
Confidence 999999999999999999999987532 11112221 2223457777776
Q ss_pred CCccEEEEChhhHHhh
Q 018508 235 DGVDCVQMGPLDLSAS 250 (355)
Q Consensus 235 pgVD~l~iGp~DLs~s 250 (355)
|+..+++|+.=+...
T Consensus 226 -G~~~v~~~~~~~~aa 240 (294)
T TIGR02319 226 -GYNLAIYPLSGWMAA 240 (294)
T ss_pred -CCcEEEEcHHHHHHH
Confidence 899999998755444
No 111
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.78 E-value=1.6 Score=37.83 Aligned_cols=174 Identities=17% Similarity=0.091 Sum_probs=84.8
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCC-HHHHH-HHHHH-HHhCCCCeEEcCCCCCHHH-----HHHHHhcCCCeEeecCCC
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGG-ISDAL-ACLHA-LAATGTPAILRLPESCPTW-----AKKALDLGPQGVMFPMID 167 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~-~~~a~-~~i~a-~~~~g~~~iVRV~~~~~~~-----i~~aLdaGa~GImvP~Ve 167 (355)
.+.++.+...|+|+|.+..-..... ..... ..+.. .+..+.+.++=+...++.. .+.+.++|+++|.++...
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccC
Confidence 4566777888999988886554211 11110 11222 2234555555443333332 247888999999999887
Q ss_pred C--HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 168 S--PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 168 s--aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
. +++..++++.++.. .....+++-+.+....... ++...++|.|.+++.
T Consensus 95 ~~~~~~~~~~~~~i~~~---------------------------~~~~~v~~~~~~~~~~~~~--~~~~~g~d~i~~~~~ 145 (200)
T cd04722 95 GYLAREDLELIRELREA---------------------------VPDVKVVVKLSPTGELAAA--AAEEAGVDEVGLGNG 145 (200)
T ss_pred CcHHHHHHHHHHHHHHh---------------------------cCCceEEEEECCCCccchh--hHHHcCCCEEEEcCC
Confidence 4 12333333333310 0012233333222111111 022347899998776
Q ss_pred hHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecc
Q 018508 246 DLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 246 DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
.-..... ...+.....+. ...+..++++ .|++ .+++.+..+++.|.+++.+|+
T Consensus 146 ~~~~~~~----~~~~~~~~~~~---~~~~~~~~pi~~~GGi-~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 146 GGGGGGR----DAVPIADLLLI---LAKRGSKVPVIAGGGI-NDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCCCCCc----cCchhHHHHHH---HHHhcCCCCEEEECCC-CCHHHHHHHHHhCCCEEEecC
Confidence 4332211 11111111111 1122234443 2333 345888888899999998874
No 112
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=93.54 E-value=0.73 Score=46.26 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=75.4
Q ss_pred HHHcCCcEEEEEEecCCHHHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHH-HHHHHHh
Q 018508 79 RLQSNETLYGLFLLSFSPTLAEISGLAG--YDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPT-WAKKALD 155 (355)
Q Consensus 79 ~L~~G~~~~gl~v~~~sp~~~e~aa~~G--~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~-~i~~aLd 155 (355)
.+......++.++.+.+++..+.+...+ .|+++++..|.- .=-+.++|.+++..+...+.-+.+.+.. ....+|+
T Consensus 67 ~~~~~g~~~~~~v~i~~~~~~~~a~~~~~~~~~~iv~~~Dw~--iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE 144 (354)
T PF01959_consen 67 ALKAEGKEVGVYVEITDKEDEEEACELAKRADYVIVEFRDWT--IIPLENLIAALQGSSTKIIAVVADAEEARVALEVLE 144 (354)
T ss_pred hhhccCceEEEEEEECCHHHHHHHHHHhccCCeEEEEcCCCc--EecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHh
Confidence 3466678889999999998887776543 699999998872 1113455666666677777777776543 4577999
Q ss_pred cCCCeEeecCCCCHHHHHHHHHHcCC
Q 018508 156 LGPQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 156 aGa~GImvP~Vesaeea~~vv~a~~~ 181 (355)
.|++||++.- +++.+++++.+.++-
T Consensus 145 ~G~dGVll~~-~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 145 KGVDGVLLDP-DDPAEIKALVALLKE 169 (354)
T ss_pred cCCCeEEECC-CCHHHHHHHHHHHhh
Confidence 9999999964 799999999998874
No 113
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.54 E-value=1.1 Score=42.63 Aligned_cols=179 Identities=16% Similarity=0.110 Sum_probs=92.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCH-----------HHHHHHHhcCCCeEee-cC
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCP-----------TWAKKALDLGPQGVMF-PM 165 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-----------~~i~~aLdaGa~GImv-P~ 165 (355)
.++.+...|+|.|+++--... .+.+. ...+..++++++...+ ..+..+++.|+++|.+ -+
T Consensus 41 ~~~~a~~~~~~~v~~~p~~~~----~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~ 112 (258)
T TIGR01949 41 TVNEVAEGGADAVLLHKGIVR----RGHRG----YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN 112 (258)
T ss_pred HHHHHHhcCCCEEEeCcchhh----hcccc----cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe
Confidence 567777888999988743221 11111 1235566777743211 2378899999987655 22
Q ss_pred C------CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc---------cHHHHHHHHH
Q 018508 166 I------DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE---------SEEGVKRAED 230 (355)
Q Consensus 166 V------esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE---------T~~av~niee 230 (355)
+ +..++++++.+.|+. || +.+++.++ +.+-+..+-+
T Consensus 113 ~g~~~~~~~~~~~~~i~~~~~~-----------------~g------------~~liv~~~~~Gvh~~~~~~~~~~~~~~ 163 (258)
T TIGR01949 113 VGSDTEWEQIRDLGMIAEICDD-----------------WG------------VPLLAMMYPRGPHIDDRDPELVAHAAR 163 (258)
T ss_pred cCCchHHHHHHHHHHHHHHHHH-----------------cC------------CCEEEEEeccCcccccccHHHHHHHHH
Confidence 1 222344555555531 11 11222222 2333334334
Q ss_pred HhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC-C----chhHHHHHHCCCCEEEec
Q 018508 231 IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM-P----HDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 231 IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~-d----~~~a~~~~~~G~~~vs~~ 305 (355)
++.--|.|.|.++. . ..+ +.+.+++..+. ..+..+||+.. + .+.++.+++.|.++++++
T Consensus 164 ~a~~~GADyikt~~---------~---~~~---~~l~~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g 227 (258)
T TIGR01949 164 LGAELGADIVKTPY---------T---GDI---DSFRDVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVG 227 (258)
T ss_pred HHHHHCCCEEeccC---------C---CCH---HHHHHHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence 44335899988741 1 122 23444443332 12223566653 2 345666779999999998
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCC
Q 018508 306 VDVGLFRSAAVEDVARFKMNLTDDA 330 (355)
Q Consensus 306 ~D~~ll~~~~~~~~~~~r~~~~~~~ 330 (355)
..+.-- .-..+.+.+++..+..+.
T Consensus 228 ~~i~~~-~dp~~~~~~l~~~i~~~~ 251 (258)
T TIGR01949 228 RNIFQH-DDPVGITKAVCKIVHENA 251 (258)
T ss_pred hHhhcC-CCHHHHHHHHHHHHhCCC
Confidence 776532 224455666666654443
No 114
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.40 E-value=6.5 Score=36.58 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=51.8
Q ss_pred ecCCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHH-HHhCCCCeEEcCCC--CCHHHHHHHHhcCCCeEeecCC
Q 018508 92 LSFSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHA-LAATGTPAILRLPE--SCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 92 ~~~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a-~~~~g~~~iVRV~~--~~~~~i~~aLdaGa~GImvP~V 166 (355)
...+|. .++.+...|+|+ .+.|+.-+..+.......++. ++..+.+.+| ++ .+...++.++++|+++|++--.
T Consensus 30 ~~~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v--~GGi~~~~~~~~~~~~Ga~~v~iGs~ 107 (241)
T PRK13585 30 SYGDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQL--GGGIRSAEDAASLLDLGVDRVILGTA 107 (241)
T ss_pred ECCCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEE--cCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 345664 667788899987 556776543232222223332 3445677776 22 2467789999999999988552
Q ss_pred --CCHHHHHHHHHH
Q 018508 167 --DSPEAAKEAVSY 178 (355)
Q Consensus 167 --esaeea~~vv~a 178 (355)
++++-++++++.
T Consensus 108 ~~~~~~~~~~i~~~ 121 (241)
T PRK13585 108 AVENPEIVRELSEE 121 (241)
T ss_pred HhhChHHHHHHHHH
Confidence 344555666555
No 115
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=93.37 E-value=1.2 Score=45.84 Aligned_cols=236 Identities=16% Similarity=0.092 Sum_probs=134.1
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh------CC--CCeEEcCCCCCHHH------------H------
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA------TG--TPAILRLPESCPTW------------A------ 150 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~------~g--~~~iVRV~~~~~~~------------i------ 150 (355)
+.+......|+|=.+.|.|--..+....+.++..... -| ....+|||.+.-+. |
T Consensus 35 EA~y~fs~lGcDE~MwDfEGKe~d~~~Vkkll~~y~~~f~~~~lGed~flT~RvPnp~vE~~erkll~e~l~~i~~s~d~ 114 (488)
T COG1892 35 EAYYAFSHLGCDEQMWDFEGKETDEQVVKKLLSRYPEFFRDHILGEDVFLTPRVPNPTVENAERKLLLETLESIARSYDY 114 (488)
T ss_pred HHHHHHHHhCCcccccccccccchHHHHHHHHHHhhhhcccccCCcceEEeccCCCchhhhHHHHHHHHHHHhhhhHHHH
Confidence 4556677899999999999876543333344443221 23 34678999875321 1
Q ss_pred HHHH--h-cCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccC-CCC-ccccccCC-CceEEEEEEccHHH
Q 018508 151 KKAL--D-LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGY-GID-EGYLSNYE-EELLIMCQVESEEG 224 (355)
Q Consensus 151 ~~aL--d-aGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~-g~~-~~y~~~~n-~~i~vi~mIET~~a 224 (355)
.+.. | ++..-|++||+.|++++..+.++.++--.| +...+ |.. .++..+.- ..+.+++.+|+.++
T Consensus 115 a~~f~~d~~pIfEVIlPMTts~~el~~v~~~y~~~v~~---------~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ 185 (488)
T COG1892 115 ARVFYGDVAPIFEVILPMTTSVEELLRVHEYYRDFVRG---------RLELEDGVTVKEWVGEFIPKLIEVIPLFEDRES 185 (488)
T ss_pred HHhhccccccceeEecccCCCHHHHHHHHHHHHHHHcc---------hhHhhcCchHhhhhccccHHHHhhhHhHhhHHH
Confidence 1111 1 233469999999999999988887653221 11112 322 22222222 36778999999999
Q ss_pred HHHHHHHhc------cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccC-------Cch
Q 018508 225 VKRAEDIAA------VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAM-------PHD 289 (355)
Q Consensus 225 v~nieeIaa------vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~-------d~~ 289 (355)
+.+...|.. .+.-=-||+|..|=++..|+.. .--.+..|+.++-+--.+-|.+ ++-|+.+ +|+
T Consensus 186 ll~a~~i~~~y~~g~~~e~~RVFLarSDpAmnyG~la--A~l~~K~AL~~l~el~ee~~~~i~PI~G~Gs~PFRG~l~P~ 263 (488)
T COG1892 186 LLKAALIVGEYAEGRDPEYLRVFLARSDPAMNYGHLA--AVLAVKKALSELSELSEELGVPIYPILGVGSLPFRGHLRPE 263 (488)
T ss_pred HHHHHHHHHHHHhcCCchhheeeeecCchhhccchHH--HHHHHHHHHHHHHHHHhhcCCcccceecCCCCCcCCCCChh
Confidence 999988873 2333469999999999998742 1224566777777766666665 2222222 245
Q ss_pred hHHHHHHCCCCEE-EecchHHHH----HHHHHHHHHHHHHhcCCCCCCCCCCchhHHhhh
Q 018508 290 APLEMKSRGYHMV-SGAVDVGLF----RSAAVEDVARFKMNLTDDADDDDDDDDDAWRER 344 (355)
Q Consensus 290 ~a~~~~~~G~~~v-s~~~D~~ll----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 344 (355)
.+...++. |.++ .+..++.+= ..-..+.+..++....+....+|.++.-+|-..
T Consensus 264 n~e~~~~E-Y~gv~T~TvQSafkYD~~~~~v~~~i~~i~~~~~~~~s~~~~e~~~~~i~~ 322 (488)
T COG1892 264 NAENVLEE-YAGVYTYTVQSAFKYDHEYGDVVKAIERIKSVKRERLSAYEEEELLAVITI 322 (488)
T ss_pred hhHHHHHH-cCCceEEEEeecccccCCHHHHHHHHHHHHhhcccccccccHHHHHHHHHH
Confidence 55544432 3222 222222221 222344555566554444444455555555443
No 116
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.36 E-value=1.7 Score=40.19 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=44.4
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCC-CCHHHHHHHHHHHHhCC-CCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGP-GGISDALACLHALAATG-TPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~-~~~~~a~~~i~a~~~~g-~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
...++.+..+|+|+|++|.-... .+.+...++++.++..+ .++++-+ .++..+.++.+.|++.|.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v--~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI--STLEEALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC--CCHHHHHHHHHcCCCEEEc
Confidence 34789999999999999976542 11124555665555444 6666644 3466778889999998754
No 117
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.29 E-value=0.94 Score=43.05 Aligned_cols=120 Identities=21% Similarity=0.181 Sum_probs=79.5
Q ss_pred HHHHHhhhcCCcEEEEeCC---CC---CCCHHHHHHHHHHHH----hCCCCeEEcCCCCC--H----HHH---HHHHhcC
Q 018508 97 TLAEISGLAGYDFVVVDME---HG---PGGISDALACLHALA----ATGTPAILRLPESC--P----TWA---KKALDLG 157 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlE---h~---~~~~~~a~~~i~a~~----~~g~~~iVRV~~~~--~----~~i---~~aLdaG 157 (355)
+.++.+..+|+-.|.|.=+ |. ..+.+++..-|+++. ..+..++.|+...- . +.| +...++|
T Consensus 89 ~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAG 168 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAG 168 (238)
T ss_dssp HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcC
Confidence 4667888999988887655 22 245667666666653 24566788887643 1 123 4467899
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCc
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGV 237 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgV 237 (355)
||+|++|-+.+.++++++++.+..| +.++. ++. -..++++.+. |+
T Consensus 169 AD~ifi~~~~~~~~i~~~~~~~~~P--------------------------------l~v~~-~~~-~~~~~eL~~l-Gv 213 (238)
T PF13714_consen 169 ADMIFIPGLQSEEEIERIVKAVDGP--------------------------------LNVNP-GPG-TLSAEELAEL-GV 213 (238)
T ss_dssp -SEEEETTSSSHHHHHHHHHHHSSE--------------------------------EEEET-TSS-SS-HHHHHHT-TE
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCC--------------------------------EEEEc-CCC-CCCHHHHHHC-CC
Confidence 9999999999999999999988532 22222 221 1677787776 79
Q ss_pred cEEEEChhhHHhhc
Q 018508 238 DCVQMGPLDLSASM 251 (355)
Q Consensus 238 D~l~iGp~DLs~sl 251 (355)
..|++|+.=+...+
T Consensus 214 ~~v~~~~~~~~aa~ 227 (238)
T PF13714_consen 214 KRVSYGNSLLRAAM 227 (238)
T ss_dssp SEEEETSHHHHHHH
T ss_pred cEEEEcHHHHHHHH
Confidence 99999988666554
No 118
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.22 E-value=2.2 Score=40.92 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=61.7
Q ss_pred CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe
Q 018508 83 NETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM 162 (355)
Q Consensus 83 G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm 162 (355)
.-|++. --.+.+|..++.+..+|+|+|.++... .+.+++.+++..+...|..++|=|.. ...+.+++++|++-|.
T Consensus 111 ~iPvl~-kdfi~~~~qi~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~--~~E~~~A~~~gadiIg 185 (260)
T PRK00278 111 SLPVLR-KDFIIDPYQIYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD--EEELERALKLGAPLIG 185 (260)
T ss_pred CCCEEe-eeecCCHHHHHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHcCCCEEE
Confidence 356665 335678888999999999999999987 34578888998888889999988875 4567889999999777
Q ss_pred ec
Q 018508 163 FP 164 (355)
Q Consensus 163 vP 164 (355)
+-
T Consensus 186 in 187 (260)
T PRK00278 186 IN 187 (260)
T ss_pred EC
Confidence 53
No 119
>KOG1261 consensus Malate synthase [Energy production and conversion]
Probab=93.21 E-value=0.16 Score=51.25 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=84.1
Q ss_pred HHHHhcCC-CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 151 KKALDLGP-QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 151 ~~aLdaGa-~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
+.....|- --.-+|+.++.+|++---+...+.. +++.-..+.+..-++|||.-|.-+++
T Consensus 210 K~li~~GsGPyFYLPKmeh~~EaklWndvF~~ae--------------------d~~Gi~RGtIraTVLIEtLpA~FQm~ 269 (552)
T KOG1261|consen 210 KELIKQGSGPYFYLPKMEHHEEAKLWNDVFCVAE--------------------DKIGIPRGTIRATVLIETLPAAFQME 269 (552)
T ss_pred HHHHhcCCCCeeecccccchHHHHHHHHHHHHHH--------------------HhcCCCcCceEEEEeHhhchHHHhHH
Confidence 44444554 2478999999999986555544431 11122345788899999999999999
Q ss_pred HHh-cc-CCccEEEEChhhHHhhc-----CCC---------CCCCCHHHHHHHHHHHHHHHhCCCceeecccC
Q 018508 230 DIA-AV-DGVDCVQMGPLDLSASM-----GYL---------WDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM 286 (355)
Q Consensus 230 eIa-av-pgVD~l~iGp~DLs~sl-----G~~---------~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~ 286 (355)
||. ++ +.+.|+-.|.=|+-.|. ..+ -....|-+..-..+++.+|++.|+...||++.
T Consensus 270 EIiy~lrdhsvGLNCGRWDyifS~iKt~qnh~~~lLPdR~qv~Mt~pFMr~Ys~~lI~tCH~RGvHAMGGMAA 342 (552)
T KOG1261|consen 270 EIIYQLRDHSVGLNCGRWDYIFSYIKTFQNHPDHLLPDRVQVGMTSPFMRAYSKRLINTCHRRGVHAMGGMAA 342 (552)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHhhCccccCCccceeccCcHHHHHHHHHHHHHHHhhcchhhccccc
Confidence 998 33 57889999999998873 111 12346777788889999999999988888866
No 120
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.21 E-value=1.6 Score=43.67 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred CHHHHHHhhhc--CCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 95 SPTLAEISGLA--GYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 95 sp~~~e~aa~~--G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
+.+.++.+..+ +.|+|+||.-|+-. +...++++.++. .+...++-=|-..++..+.++++|||+|.|=
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGhs--~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGYS--EHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcH--HHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34566777766 59999999999842 344455555542 3445555555667888999999999999887
No 121
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.08 E-value=1.1 Score=43.92 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHhhhcCCcEEEEeCC-------CC----CCCHHHHHHHHHHHHhC----CCCeEEcCCCCCH----HHH---HHHHh
Q 018508 98 LAEISGLAGYDFVVVDME-------HG----PGGISDALACLHALAAT----GTPAILRLPESCP----TWA---KKALD 155 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlE-------h~----~~~~~~a~~~i~a~~~~----g~~~iVRV~~~~~----~~i---~~aLd 155 (355)
.++.+..+|+-.|.|.=+ |. ..+.+++..-|+++... ..-++.|+..... +.| +...+
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~ 172 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVE 172 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHH
Confidence 467888899988877333 21 23566666666665432 2345678766431 233 45678
Q ss_pred cCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccH-HHHHHHHHHhcc
Q 018508 156 LGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESE-EGVKRAEDIAAV 234 (355)
Q Consensus 156 aGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~-~av~nieeIaav 234 (355)
+|||+|++|-..+.++++++++.+..| +++-+++-. ....+++|+.+.
T Consensus 173 AGAD~vfi~g~~~~e~i~~~~~~i~~P-------------------------------l~~n~~~~~~~p~~s~~eL~~l 221 (285)
T TIGR02317 173 AGADMIFPEALTSLEEFRQFAKAVKVP-------------------------------LLANMTEFGKTPLFTADELREA 221 (285)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHhcCCC-------------------------------EEEEeccCCCCCCCCHHHHHHc
Confidence 999999999999999999999887532 122222211 123357777766
Q ss_pred CCccEEEEChhhHHhh
Q 018508 235 DGVDCVQMGPLDLSAS 250 (355)
Q Consensus 235 pgVD~l~iGp~DLs~s 250 (355)
|+..+++|+.=+...
T Consensus 222 -Gv~~v~~~~~~~~aa 236 (285)
T TIGR02317 222 -GYKMVIYPVTAFRAM 236 (285)
T ss_pred -CCcEEEEchHHHHHH
Confidence 899999998755433
No 122
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=93.06 E-value=1 Score=44.49 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=88.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHh-hhcC---------CcEEEEeCCCCC--CCHHHHHHHHHH-HHhCCCCeEE
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEIS-GLAG---------YDFVVVDMEHGP--GGISDALACLHA-LAATGTPAIL 140 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~a-a~~G---------~D~vilDlEh~~--~~~~~a~~~i~a-~~~~g~~~iV 140 (355)
+.+.++++ +-.+.++.=..|.-+.+++. ..+| +|.|+|.=+|-. .+...+...++. +...+...-|
T Consensus 128 ~~~V~~~~-~~~I~~TRKT~PGlR~l~k~AV~~GGg~~HR~gLsd~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kI 206 (308)
T PLN02716 128 KAMADAAK-PACILETRKTAPGLRLVDKWAVLIGGGKNHRMGLFDMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKI 206 (308)
T ss_pred HHHHHHhC-cCEEeeecCCCCcchHHHHHHHHhcCCcccCCCCCceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeE
Confidence 45556665 33355555566777767654 3444 599999999963 345555555544 2222222234
Q ss_pred cCCCCCHHHHHHHHh------cCCCeEeecCC----C----CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCcccc
Q 018508 141 RLPESCPTWAKKALD------LGPQGVMFPMI----D----SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYL 206 (355)
Q Consensus 141 RV~~~~~~~i~~aLd------aGa~GImvP~V----e----saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~ 206 (355)
.|--.+..++..+++ +|++.||+=+. + ++++++++++.++-
T Consensus 207 eVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~------------------------- 261 (308)
T PLN02716 207 EVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELING------------------------- 261 (308)
T ss_pred EEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCC-------------------------
Confidence 444445778999999 99999999987 3 89999999987641
Q ss_pred ccCCCceEEEEEEccHHH--HHHHHHHhccCCccEEEECh
Q 018508 207 SNYEEELLIMCQVESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 207 ~~~n~~i~vi~mIET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
.. .||-..| ++|+.++|.. |||.|++|.
T Consensus 262 -----~~----~lEaSGGIt~~ni~~yA~t-GVD~Is~Ga 291 (308)
T PLN02716 262 -----RF----ETEASGNVTLDTVHKIGQT-GVTYISSGA 291 (308)
T ss_pred -----Cc----eEEEECCCCHHHHHHHHHc-CCCEEEeCc
Confidence 00 1343333 5789999874 899999986
No 123
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.63 E-value=9.4 Score=36.76 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred cEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCC---------CCCHHHHHHHHHHHHhC-CCCeEEcCCCCCH--H
Q 018508 85 TLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHG---------PGGISDALACLHALAAT-GTPAILRLPESCP--T 148 (355)
Q Consensus 85 ~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~---------~~~~~~a~~~i~a~~~~-g~~~iVRV~~~~~--~ 148 (355)
..++.-+...+++ .++.+...|+|+|-|.+-.- ..+.+.+.+++++++.. +.+++||++.... .
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~ 169 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIV 169 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHH
Confidence 3344444555554 34455567999998865421 12445566777777654 7899999975432 2
Q ss_pred -HHHHHHhcCCCeEee
Q 018508 149 -WAKKALDLGPQGVMF 163 (355)
Q Consensus 149 -~i~~aLdaGa~GImv 163 (355)
.++.+.++|+++|.+
T Consensus 170 ~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 170 EIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 245677899999876
No 124
>PRK15452 putative protease; Provisional
Probab=92.57 E-value=0.72 Score=47.77 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=92.7
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCC-------CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHH--------HHHH
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHG-------PGGISDALACLHALAATGTPAILRLPESCPT--------WAKK 152 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~-------~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~--------~i~~ 152 (355)
-+.+|..+.+.++.|..+|+|.|.+-.+.- .++.+++.+.+.-++..|..++|-+|..-.. .+..
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~ 84 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEP 84 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHH
Confidence 688999999999999999999999977642 4667888888887788888888887765321 2566
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCC------ccccccCCCceEEEEEEccHHHHH
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGID------EGYLSNYEEELLIMCQVESEEGVK 226 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~------~~y~~~~n~~i~vi~mIET~~av~ 226 (355)
+.+.|+|||+| .+...++.+.+.. |..-. ...+... ..|+....- -.++.--|- -++
T Consensus 85 l~~~gvDgvIV---~d~G~l~~~ke~~--p~l~i---------h~stqlni~N~~a~~f~~~lG~-~rvvLSrEL--sl~ 147 (443)
T PRK15452 85 VIAMKPDALIM---SDPGLIMMVREHF--PEMPI---------HLSVQANAVNWATVKFWQQMGL-TRVILSREL--SLE 147 (443)
T ss_pred HHhCCCCEEEE---cCHHHHHHHHHhC--CCCeE---------EEEecccCCCHHHHHHHHHCCC-cEEEECCcC--CHH
Confidence 77899999998 5566666655532 21101 1111111 123333221 234444554 566
Q ss_pred HHHHHh-ccC--CccEEEEChhhHH
Q 018508 227 RAEDIA-AVD--GVDCVQMGPLDLS 248 (355)
Q Consensus 227 nieeIa-avp--gVD~l~iGp~DLs 248 (355)
.|.+|+ .++ .+..++-|..=++
T Consensus 148 EI~~i~~~~~~~elEvfVHGalc~m 172 (443)
T PRK15452 148 EIEEIRQQCPDMELEVFVHGALCMA 172 (443)
T ss_pred HHHHHHhhCCCCCEEEEEEccchhe
Confidence 777776 344 3567777776544
No 125
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.46 E-value=7.6 Score=34.72 Aligned_cols=158 Identities=22% Similarity=0.213 Sum_probs=88.0
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCC-C-HHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPG-G-ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEAAK 173 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~-~-~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aeea~ 173 (355)
..++.+...|.++|.|..-+... + .+.++.+...++..+...+| |+ ...-+.+.|++||=++.-+- ..+++
T Consensus 16 ~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~lii--n~----~~~la~~~~~dGvHl~~~~~~~~~~r 89 (180)
T PF02581_consen 16 EQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLII--ND----RVDLALELGADGVHLGQSDLPPAEAR 89 (180)
T ss_dssp HHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEE--ES-----HHHHHHCT-SEEEEBTTSSSHHHHH
T ss_pred HHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEe--cC----CHHHHHhcCCCEEEecccccchHHhh
Confidence 45678888999999998876431 1 12233444445556666664 33 24457789999999998542 22222
Q ss_pred HHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCC
Q 018508 174 EAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY 253 (355)
Q Consensus 174 ~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~ 253 (355)
. .+. ....+.+.+-|.+-+..+.+ .++|.+++||-=-+.+ -
T Consensus 90 ~---~~~------------------------------~~~~ig~S~h~~~e~~~a~~----~g~dYv~~gpvf~T~s--k 130 (180)
T PF02581_consen 90 K---LLG------------------------------PDKIIGASCHSLEEAREAEE----LGADYVFLGPVFPTSS--K 130 (180)
T ss_dssp H---HHT------------------------------TTSEEEEEESSHHHHHHHHH----CTTSEEEEETSS--SS--S
T ss_pred h---hcc------------------------------cceEEEeecCcHHHHHHhhh----cCCCEEEECCccCCCC--C
Confidence 2 221 12467888888887665553 4789999999511111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecc
Q 018508 254 LWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 254 ~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
++. .|.=...+.++ ++...+++ +||+ +++.+..+++.|++++++.+
T Consensus 131 ~~~--~~~g~~~l~~~---~~~~~~pv~AlGGI--~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 131 PGA--PPLGLDGLREI---ARASPIPVYALGGI--TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp SS---TTCHHHHHHHH---HHHTSSCEEEESS----TTTHHHHHHTT-SEEEESH
T ss_pred ccc--cccCHHHHHHH---HHhCCCCEEEEcCC--CHHHHHHHHHcCCCEEEEEe
Confidence 111 11112223333 33333443 4544 67888899999999998764
No 126
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.38 E-value=6.2 Score=37.74 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=52.8
Q ss_pred EEEEEecCCHH----HHHHhhhcCCcEEEEeCCCC--C------CCHHHHHHHHHHHHh-CCCCeEEcCCCCCH-----H
Q 018508 87 YGLFLLSFSPT----LAEISGLAGYDFVVVDMEHG--P------GGISDALACLHALAA-TGTPAILRLPESCP-----T 148 (355)
Q Consensus 87 ~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~--~------~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~-----~ 148 (355)
+..-+...+++ .++.+...|+|+|-|++-.- . .+.+.+.+++++++. .+.+++||++.... .
T Consensus 101 vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~ 180 (289)
T cd02810 101 LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVE 180 (289)
T ss_pred EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHH
Confidence 33334444553 35666678999999987532 1 134556677777654 37889999886543 2
Q ss_pred HHHHHHhcCCCeEeecCC
Q 018508 149 WAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~V 166 (355)
.++.+.++|+++|.++..
T Consensus 181 ~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 181 LAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHHcCCCEEEEEcc
Confidence 356677899999998743
No 127
>PRK07695 transcriptional regulator TenI; Provisional
Probab=92.36 E-value=8.4 Score=34.98 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=87.6
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCC---eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 102 SGLAGYDFVVVDMEHGPGGISDALACLHALAATGTP---AILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 102 aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~---~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
+...|.++|.|..-+. +.++....+..+...+.. .+| |+ ...-++..|++||-++.-.- .++.+.+.
T Consensus 23 ~~~~g~~~iqlR~k~~--~~~~~~~~~~~l~~~~~~~~~lii--n~----~~~la~~~~~~gvHl~~~~~--~~~~~r~~ 92 (201)
T PRK07695 23 QIHSEVDYIHIREREK--SAKELYEGVESLLKKGVPASKLII--ND----RVDIALLLNIHRVQLGYRSF--SVRSVREK 92 (201)
T ss_pred HHhCCCCEEEEcCCCC--CHHHHHHHHHHHHHhCCCCCeEEE--EC----HHHHHHHcCCCEEEeCcccC--CHHHHHHh
Confidence 6688999999997764 445555555555443332 333 33 24467788999999987421 12222221
Q ss_pred cCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhc-CCCCCC
Q 018508 179 CRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASM-GYLWDP 257 (355)
Q Consensus 179 ~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~sl-G~~~~~ 257 (355)
++ ...+++-+.|.+-+..+. + -|+|.+++|+---+.+- |. .+
T Consensus 93 --~~-----------------------------~~~ig~s~~s~e~a~~a~---~-~Gadyi~~g~v~~t~~k~~~--~~ 135 (201)
T PRK07695 93 --FP-----------------------------YLHVGYSVHSLEEAIQAE---K-NGADYVVYGHVFPTDCKKGV--PA 135 (201)
T ss_pred --CC-----------------------------CCEEEEeCCCHHHHHHHH---H-cCCCEEEECCCCCCCCCCCC--CC
Confidence 11 124566666665433322 2 38999999984433221 11 11
Q ss_pred CCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 258 GHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 258 ~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
... ..++++... ..++ ..||+ +++.+..+++.|++++.+++...
T Consensus 136 ~g~---~~l~~~~~~---~~ipvia~GGI--~~~~~~~~~~~Ga~gvav~s~i~ 181 (201)
T PRK07695 136 RGL---EELSDIARA---LSIPVIAIGGI--TPENTRDVLAAGVSGIAVMSGIF 181 (201)
T ss_pred CCH---HHHHHHHHh---CCCCEEEEcCC--CHHHHHHHHHcCCCEEEEEHHHh
Confidence 122 223333222 2344 35555 67888889999999999998775
No 128
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.33 E-value=2.5 Score=44.37 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=54.2
Q ss_pred cCCcEEEEEEecC--CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCCeEEcCCCCCHHHHHHHHhcC
Q 018508 82 SNETLYGLFLLSF--SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT--GTPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~~--sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~~iVRV~~~~~~~i~~aLdaG 157 (355)
.|+-.+|..+... ..+.++.+..+|+|+|.||.-|+-... +.+.++.++.. +.++++ =|-.+....+.+.++|
T Consensus 227 ~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~--~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG 303 (495)
T PTZ00314 227 NGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIY--QIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG 303 (495)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchH--HHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC
Confidence 4677788887653 346778888999999999999874321 23445544322 344444 1445677899999999
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+++|.+
T Consensus 304 ad~I~v 309 (495)
T PTZ00314 304 ADGLRI 309 (495)
T ss_pred CCEEEE
Confidence 999976
No 129
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.29 E-value=2.6 Score=43.26 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=52.2
Q ss_pred cCCcEEEEEEecCCH--HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-C-CCCeEEcCCCCCHHHHHHHHhcC
Q 018508 82 SNETLYGLFLLSFSP--TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-T-GTPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~~sp--~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~-g~~~iVRV~~~~~~~i~~aLdaG 157 (355)
.|+-.+|.-+..... +.++.+..+|+|+|+||.-|+.. +...++++.++. . +..+++ =|-......+.++++|
T Consensus 139 ~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~--~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~aG 215 (404)
T PRK06843 139 NNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHS--TRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLISVG 215 (404)
T ss_pred hcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCC--hhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHHcC
Confidence 455566666654322 68888999999999999999742 334455555432 2 233322 1334567788999999
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+++|.+
T Consensus 216 aD~I~v 221 (404)
T PRK06843 216 ADCLKV 221 (404)
T ss_pred CCEEEE
Confidence 999885
No 130
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.10 E-value=9.9 Score=35.22 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=95.4
Q ss_pred HHHHcCCcEEEEEEecCC---HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCC-CCHHHHHH
Q 018508 78 YRLQSNETLYGLFLLSFS---PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPE-SCPTWAKK 152 (355)
Q Consensus 78 ~~L~~G~~~~gl~v~~~s---p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~-~~~~~i~~ 152 (355)
+.|.+ .+++.+.-..+- ...++.+...|...+=+=+.. +. +.+.++.+. ..+...+|=... .+..++..
T Consensus 5 ~~l~~-~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~-~~----~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 5 QPFTK-LPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNS-PD----PFDSIAALVKALGDRALIGAGTVLSPEQVDR 78 (206)
T ss_pred hHHHh-CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC-cc----HHHHHHHHHHHcCCCcEEeEEecCCHHHHHH
Confidence 34433 455555433322 235677888999987766433 22 223343332 333333322221 24678999
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHh
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIA 232 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIa 232 (355)
++++|+++|+.|..+ .+-+ ++++.. ...+++-+.|++=+..+.+
T Consensus 79 a~~aGA~fivsp~~~-~~v~----~~~~~~-----------------------------~~~~~~G~~t~~E~~~A~~-- 122 (206)
T PRK09140 79 LADAGGRLIVTPNTD-PEVI----RRAVAL-----------------------------GMVVMPGVATPTEAFAALR-- 122 (206)
T ss_pred HHHcCCCEEECCCCC-HHHH----HHHHHC-----------------------------CCcEEcccCCHHHHHHHHH--
Confidence 999999999999964 3333 333211 1234555778866655544
Q ss_pred ccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 233 AVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 233 avpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
-|.|.|-+=|. ..-.++....+. .... ..+++ +||+ +++.+..+++.|++.+.+++...
T Consensus 123 --~Gad~vk~Fpa----------~~~G~~~l~~l~---~~~~-~~ipvvaiGGI--~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 123 --AGAQALKLFPA----------SQLGPAGIKALR---AVLP-PDVPVFAVGGV--TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred --cCCCEEEECCC----------CCCCHHHHHHHH---hhcC-CCCeEEEECCC--CHHHHHHHHHCCCeEEEEehHhc
Confidence 36787765221 122344333222 1111 12443 4443 67889999999999999998874
No 131
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.04 E-value=4 Score=42.23 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=56.1
Q ss_pred cCCcEEEEEEec--CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCCeEEcCCCCCHHHHHHHHhcC
Q 018508 82 SNETLYGLFLLS--FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT--GTPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~--~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~~iVRV~~~~~~~i~~aLdaG 157 (355)
.|+-+++..+.. ...+.++.+..+|+|+|.||.-|+. -..+.++++.++.. ..++++ =|-..+...+.+.++|
T Consensus 210 ~g~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~--~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aG 286 (450)
T TIGR01302 210 NGRLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGH--SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAG 286 (450)
T ss_pred CCCEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCc--HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhC
Confidence 455566767665 3456788889999999999999973 24556666666532 455555 2444678899999999
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+++|.+
T Consensus 287 ad~i~v 292 (450)
T TIGR01302 287 ADGLRV 292 (450)
T ss_pred CCEEEE
Confidence 999965
No 132
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.87 E-value=12 Score=36.18 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=50.3
Q ss_pred EEEEEEecCCHHH----HHHhhhcC-CcEEEEeC-----CCC----CCCHHHHHHHHHHHHhC-CCCeEEcCCCCCH--H
Q 018508 86 LYGLFLLSFSPTL----AEISGLAG-YDFVVVDM-----EHG----PGGISDALACLHALAAT-GTPAILRLPESCP--T 148 (355)
Q Consensus 86 ~~gl~v~~~sp~~----~e~aa~~G-~D~vilDl-----Eh~----~~~~~~a~~~i~a~~~~-g~~~iVRV~~~~~--~ 148 (355)
.+..-+...+++. ++.+...| +|+|=|.+ .|+ ..+.+.+.+.+++++.. ..+++||++.... .
T Consensus 93 p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~ 172 (301)
T PRK07259 93 PIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIV 172 (301)
T ss_pred cEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHH
Confidence 3444445566653 34555678 99998865 552 12455667777777643 7899999985422 2
Q ss_pred H-HHHHHhcCCCeEee
Q 018508 149 W-AKKALDLGPQGVMF 163 (355)
Q Consensus 149 ~-i~~aLdaGa~GImv 163 (355)
. ++.+.++|+++|.+
T Consensus 173 ~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 173 EIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 2 45667899999876
No 133
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=91.84 E-value=4.2 Score=31.95 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=65.4
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+++.|...+. .-+....+..+..+.+....+|.+++|++-...+-.+..+.++... ...+.++=.+..+.....++
T Consensus 12 ~~l~~~l~~~~~-~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~ 89 (112)
T PF00072_consen 12 ELLEKLLERAGY-EEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEA 89 (112)
T ss_dssp HHHHHHHHHTTE-EEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHH
T ss_pred HHHHHHHHhCCC-CEEEEECCHHHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEecCCCCHHHHHHH
Confidence 345666663333 1222334444566777888899999999887766556555555433 44555666667778889999
Q ss_pred HhcCCCeEeecCCCCHHHHHHHH
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAV 176 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv 176 (355)
+++|+++++. +=-+.+++.+.+
T Consensus 90 ~~~g~~~~l~-kp~~~~~l~~~i 111 (112)
T PF00072_consen 90 LRAGADDYLS-KPFSPEELRAAI 111 (112)
T ss_dssp HHTTESEEEE-SSSSHHHHHHHH
T ss_pred HHCCCCEEEE-CCCCHHHHHHhh
Confidence 9999988653 333677776655
No 134
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.80 E-value=1.6 Score=42.62 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=85.8
Q ss_pred chHHHHHHHcCCcEEEEE---EecCCHHHHHH-hhhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCC
Q 018508 73 PESLKYRLQSNETLYGLF---LLSFSPTLAEI-SGLAG---------YDFVVVDMEHGPGGISDALACLHALAAT--GTP 137 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~---v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~ 137 (355)
.+++.++++...+-+-++ =..|.-+.+++ +...| .|.|+|==+|-.+- ...+.+..++.. ...
T Consensus 107 T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~--~i~~av~~~r~~~~~~k 184 (278)
T PRK08385 107 TRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALV--PLEEAIRRAKEFSVYKV 184 (278)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHH--HHHHHHHHHHHhCCCCc
Confidence 456777776434433333 34555555554 33444 47777766774321 244444444432 244
Q ss_pred eEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE
Q 018508 138 AILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC 217 (355)
Q Consensus 138 ~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~ 217 (355)
+.|.+. +..++..++++|+|.||+=+. ++++++++++.++.. +. +.++
T Consensus 185 IeVEv~--~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~-----~~--------------------~~~~---- 232 (278)
T PRK08385 185 VEVEVE--SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKRE-----GL--------------------RERV---- 232 (278)
T ss_pred EEEEeC--CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhc-----Cc--------------------CCCE----
Confidence 666665 467899999999999999887 799999999987531 10 1122
Q ss_pred EEccHHH--HHHHHHHhccCCccEEEECh
Q 018508 218 QVESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 218 mIET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
.||-..| ++|+.++++. |||+|++|.
T Consensus 233 ~leaSGGI~~~ni~~yA~t-GvD~Is~ga 260 (278)
T PRK08385 233 KIEVSGGITPENIEEYAKL-DVDVISLGA 260 (278)
T ss_pred EEEEECCCCHHHHHHHHHc-CCCEEEeCh
Confidence 3555444 4688888875 899999987
No 135
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.77 E-value=18 Score=37.53 Aligned_cols=196 Identities=9% Similarity=0.049 Sum_probs=109.6
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHH----HHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDA----LACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM 162 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a----~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm 162 (355)
+++|.-.++...++.+...|.++|-+-.-+.. .++. +.+...++.++...+| |+ .+.-++..|++||=
T Consensus 211 l~LY~Vtd~~~~ve~aL~aGv~~VQLReK~ls--~~el~~la~~l~~l~~~~gv~LiI--ND----~~dlAl~~gAdGVH 282 (437)
T PRK12290 211 LGLYPVVDDVEWIERLLPLGINTVQLRIKDPQ--QADLEQQIIRAIALGREYNAQVFI--ND----YWQLAIKHQAYGVH 282 (437)
T ss_pred ceEEEEeCCHHHHHHHHhCCCCEEEEeCCCCC--HHHHHHHHHHHHHHHHHhCCEEEE--EC----HHHHHHHcCCCEEE
Confidence 46776667778899999999999999866643 2333 3333334556766664 43 25567889999998
Q ss_pred ecCCCC-HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEE
Q 018508 163 FPMIDS-PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQ 241 (355)
Q Consensus 163 vP~Ves-aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~ 241 (355)
++.-+- ..+++++. .....+++.+-+.+-+..+.+ .|.|.|.
T Consensus 283 LGQeDL~~~~aR~il---------------------------------g~~~iIGvStHs~eEl~~A~~----~gaDYI~ 325 (437)
T PRK12290 283 LGQEDLEEANLAQLT---------------------------------DAGIRLGLSTHGYYELLRIVQ----IQPSYIA 325 (437)
T ss_pred cChHHcchhhhhhhc---------------------------------CCCCEEEEecCCHHHHHHHhh----cCCCEEE
Confidence 886221 11111110 012356777766665544443 3789999
Q ss_pred EChhhHHhhcC-CCCCCCCHHHHHHHHHHHHH---HHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHHHHHHHH
Q 018508 242 MGPLDLSASMG-YLWDPGHRKVREMMRVAEKG---VLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVGLFRSAA 315 (355)
Q Consensus 242 iGp~DLs~slG-~~~~~~~p~v~~ai~~iv~a---a~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ll~~~~ 315 (355)
+||- +....- .+..+...+.+..+.+++.. ++..++++ +||+ +++.+...++.|.+++++.+.+.-- .--
T Consensus 326 lGPI-FpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI--~~~Ni~~vl~aGa~GVAVVSAI~~A-~DP 401 (437)
T PRK12290 326 LGHI-FPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI--DQSNAEQVWQCGVSSLAVVRAITLA-EDP 401 (437)
T ss_pred ECCc-cCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc--CHHHHHHHHHcCCCEEEEehHhhcC-CCH
Confidence 9995 221111 01122233333222222211 11124443 3433 6788888999999999988776521 113
Q ss_pred HHHHHHHHHhcCCCCC
Q 018508 316 VEDVARFKMNLTDDAD 331 (355)
Q Consensus 316 ~~~~~~~r~~~~~~~~ 331 (355)
++.+..++.....+..
T Consensus 402 ~aa~~~l~~~~~~~~~ 417 (437)
T PRK12290 402 QLVIEFFDQVMAENQL 417 (437)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 3445555554444433
No 136
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=91.76 E-value=19 Score=37.66 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=91.6
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHHHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEAAKE 174 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aeea~~ 174 (355)
.++.+...|.++|.|..-+.+.. .+.++.+...++..+...+ ||+ ...-++..|++||=++.-.- ..++++
T Consensus 312 ~l~~~l~~Gv~~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~li--ind----~~~lA~~~~adGvHl~~~d~~~~~~r~ 385 (502)
T PLN02898 312 AVRAAIEGGATIVQLREKEAETREFIEEAKACLAICRSYGVPLL--IND----RVDVALACDADGVHLGQSDMPVRLARS 385 (502)
T ss_pred HHHHHHHcCCCEEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEE--EcC----hHHHHHhcCCCEEEeChHhcCHHHHHH
Confidence 57888899999999976554321 1222333334455566555 343 24556778999998876321 222221
Q ss_pred HHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC
Q 018508 175 AVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254 (355)
Q Consensus 175 vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~ 254 (355)
. + . ....+.+-+-|.+-+..+.+ .|+|.|.+||--=+.+=..
T Consensus 386 ~---~--~----------------------------~~~~iG~S~h~~~e~~~a~~----~gadyi~~gpif~t~tk~~- 427 (502)
T PLN02898 386 L---L--G----------------------------PGKIIGVSCKTPEQAEQAWK----DGADYIGCGGVFPTNTKAN- 427 (502)
T ss_pred h---c--C----------------------------CCCEEEEeCCCHHHHHHHhh----cCCCEEEECCeecCCCCCC-
Confidence 1 1 0 12356777777766555443 4899999999733322110
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCC---EEEecchHH
Q 018508 255 WDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYH---MVSGAVDVG 309 (355)
Q Consensus 255 ~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~---~vs~~~D~~ 309 (355)
..+...+ .++.+.. ...+++ +||+ +++.+..+++.|+. ++.+++.+.
T Consensus 428 ~~~~g~~---~~~~~~~---~~~~Pv~aiGGI--~~~~~~~~~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 428 NKTIGLD---GLREVCE---ASKLPVVAIGGI--SASNAASVMESGAPNLKGVAVVSALF 479 (502)
T ss_pred CCCCCHH---HHHHHHH---cCCCCEEEECCC--CHHHHHHHHHcCCCcCceEEEEeHHh
Confidence 1122222 2333322 234453 3333 57888899999999 999998875
No 137
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=91.42 E-value=1.6 Score=43.60 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=68.8
Q ss_pred cCCcEEEEEEecCCHHHHHHhhhcC--CcEEEEeCCCC-CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHH-HHHHHHhcC
Q 018508 82 SNETLYGLFLLSFSPTLAEISGLAG--YDFVVVDMEHG-PGGISDALACLHALAATGTPAILRLPESCPT-WAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~~sp~~~e~aa~~G--~D~vilDlEh~-~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~-~i~~aLdaG 157 (355)
......+.++.+.+++..+.+.... +|+++++.++. .+- +.++|.++ ......+.-+++.+.. ....+|+.|
T Consensus 62 ~~~~~~~~~v~i~~~~~e~~a~~~~~~~~~viv~~~dW~iIP---lEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G 137 (344)
T PRK02290 62 GSAGEDGAYVEIRDKEDEEFAAELAKEVDYVIVEGRDWTIIP---LENLIADL-GQSGKIIAGVADAEEAKLALEILEKG 137 (344)
T ss_pred ccCCceEEEEEECCHHHHHHHHHhhccCCEEEEECCCCcEec---HHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccC
Confidence 3345578888888888777665543 48999999986 122 33455555 4556677777766543 356789999
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCC
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~ 181 (355)
++||++.- +++.+++++++.++-
T Consensus 138 ~dGVvl~~-~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 138 VDGVLLDP-DDPNEIKAIVALIEE 160 (344)
T ss_pred CCeEEECC-CCHHHHHHHHHHHhc
Confidence 99999974 899999999999864
No 138
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=91.22 E-value=17 Score=36.61 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=92.8
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHHHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEAAKE 174 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aeea~~ 174 (355)
.++.+...|.++|.+-.-+.+.. .+.++.+..-++..+...+| |+ .+.-++..|++||=++.-+- ..+++.
T Consensus 162 ~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lII--ND----~vdlAl~~~aDGVHLgq~dl~~~~aR~ 235 (347)
T PRK02615 162 VVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIV--ND----RVDIALAVDADGVHLGQEDLPLAVARQ 235 (347)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEE--eC----hHHHHHHcCCCEEEeChhhcCHHHHHH
Confidence 56778889999999987665421 12233333444556666554 43 24557889999999986432 122211
Q ss_pred HHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC
Q 018508 175 AVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254 (355)
Q Consensus 175 vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~ 254 (355)
.+ | ....|++.+-|++-+.++.+ .|.|.|++||---+.+= +
T Consensus 236 ---ll-----g-------------------------~~~iIG~S~Hs~~e~~~A~~----~GaDYI~lGPvf~T~tK--p 276 (347)
T PRK02615 236 ---LL-----G-------------------------PEKIIGRSTTNPEEMAKAIA----EGADYIGVGPVFPTPTK--P 276 (347)
T ss_pred ---hc-----C-------------------------CCCEEEEecCCHHHHHHHHH----cCCCEEEECCCcCCCCC--C
Confidence 11 1 12357777777766544432 48999999996433211 1
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 255 W-DPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 255 ~-~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
+ .+... +.+..+.. ...+++ +||+ +++.+..+++.|+++|++++.+.
T Consensus 277 ~~~~~Gl---e~l~~~~~---~~~iPv~AiGGI--~~~ni~~l~~~Ga~gVAvisaI~ 326 (347)
T PRK02615 277 GKAPAGL---EYLKYAAK---EAPIPWFAIGGI--DKSNIPEVLQAGAKRVAVVRAIM 326 (347)
T ss_pred CCCCCCH---HHHHHHHH---hCCCCEEEECCC--CHHHHHHHHHcCCcEEEEeHHHh
Confidence 1 11222 22333322 233443 4444 56788889999999999988774
No 139
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=91.19 E-value=6.4 Score=36.10 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe
Q 018508 83 NETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM 162 (355)
Q Consensus 83 G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm 162 (355)
+-|++. .-.+-++..++.+..+|+|.|+++..+-+ .+++++++..+...|..++|=+. +...++++++.|++.|.
T Consensus 72 ~iPi~~-~~~i~~~~~v~~~~~~Gad~v~l~~~~~~--~~~~~~~~~~~~~~g~~~~v~v~--~~~e~~~~~~~g~~~i~ 146 (217)
T cd00331 72 SLPVLR-KDFIIDPYQIYEARAAGADAVLLIVAALD--DEQLKELYELARELGMEVLVEVH--DEEELERALALGAKIIG 146 (217)
T ss_pred CCCEEE-CCeecCHHHHHHHHHcCCCEEEEeeccCC--HHHHHHHHHHHHHcCCeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 345442 22356777899999999999999887654 37778888777777888776665 45568889999999886
Q ss_pred ec
Q 018508 163 FP 164 (355)
Q Consensus 163 vP 164 (355)
+-
T Consensus 147 ~t 148 (217)
T cd00331 147 IN 148 (217)
T ss_pred Ee
Confidence 64
No 140
>PRK06801 hypothetical protein; Provisional
Probab=91.11 E-value=16 Score=35.71 Aligned_cols=209 Identities=15% Similarity=0.163 Sum_probs=112.7
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~ 145 (355)
+.+-+.-+++...+|.|. ..+.+. ++.+-..+...| |.+-.+. .+.+.+..+++. ++....++.|=....
T Consensus 7 ~~~l~~A~~~~yaV~Afn-~~n~e~~~avi~AAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~ 84 (286)
T PRK06801 7 ANGLAHARKHGYALGAFN-VLDSHFLRALFAAAKQERSPFI-INIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG 84 (286)
T ss_pred HHHHHHHHHCCceEEEEe-eCCHHHHHHHHHHHHHHCCCEE-EEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334444556778888884 445543 345556676744 4443332 345556666654 356778888877665
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEE---E
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLI---M 216 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~v---i 216 (355)
+...+.++++.|+..||+ |.-++.+..+++++.++.. | ..- ..-.|. +...+..+.. .
T Consensus 85 ~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~--g---v~V----E~ElG~----vgg~e~~v~~~~~~ 151 (286)
T PRK06801 85 LHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAV--G---VSV----EAELGA----VGGDEGGALYGEAD 151 (286)
T ss_pred CCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHc--C---CeE----EeecCc----ccCCCCCcccCCcc
Confidence 356799999999999998 6667777788888888532 1 110 000110 1111111100 0
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC-CCC-CCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHH
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL-WDP-GHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPL 292 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~-~~~-~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~ 292 (355)
..+-| -.+.+.++++--|+|.|-+.-+ ..-|.. +.+ ...+. ++++.+.. +++ ..|+-..+.+..+
T Consensus 152 ~~~~T--~pe~a~~f~~~tgvD~LAvaiG---t~Hg~y~~~~~l~~e~---l~~i~~~~---~~PLVlHGGSgi~~e~~~ 220 (286)
T PRK06801 152 SAKFT--DPQLARDFVDRTGIDALAVAIG---NAHGKYKGEPKLDFAR---LAAIHQQT---GLPLVLHGGSGISDADFR 220 (286)
T ss_pred cccCC--CHHHHHHHHHHHCcCEEEeccC---CCCCCCCCCCCCCHHH---HHHHHHhc---CCCEEEECCCCCCHHHHH
Confidence 00111 2255566664358898776211 111211 111 22222 33332222 333 2233233457789
Q ss_pred HHHHCCCCEEEecchH
Q 018508 293 EMKSRGYHMVSGAVDV 308 (355)
Q Consensus 293 ~~~~~G~~~vs~~~D~ 308 (355)
.+++.|++.+.+++|.
T Consensus 221 ~~i~~Gi~KINv~T~~ 236 (286)
T PRK06801 221 RAIELGIHKINFYTGM 236 (286)
T ss_pred HHHHcCCcEEEehhHH
Confidence 9999999999999886
No 141
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.07 E-value=13 Score=34.38 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=53.4
Q ss_pred CCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC--CCC
Q 018508 94 FSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPM--IDS 168 (355)
Q Consensus 94 ~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~--Ves 168 (355)
.+|. .++.....|+|. .++|++........-.++++.+ +..+.++++=-.-.+...+++++.+|++.|++.- .++
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 4565 566777889976 6788887632221111223222 2235555553322357789999999999999873 366
Q ss_pred HHHHHHHHHHc
Q 018508 169 PEAAKEAVSYC 179 (355)
Q Consensus 169 aeea~~vv~a~ 179 (355)
++.+.++++.+
T Consensus 108 ~~~~~~~~~~~ 118 (230)
T TIGR00007 108 PDLVKELLKEY 118 (230)
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 142
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.02 E-value=5.1 Score=39.88 Aligned_cols=67 Identities=7% Similarity=0.205 Sum_probs=44.9
Q ss_pred HHHHHhhhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 97 TLAEISGLAG--YDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 97 ~~~e~aa~~G--~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
+.++.+...| .|+|++|.-|+-. ....++++.++. .+.+.++-=|-......++++++|+++|.+-+
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s--~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHS--NSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGI 166 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCch--HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECC
Confidence 4566677778 6999999999842 334445554432 34443333233467889999999999999773
No 143
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=90.93 E-value=3 Score=40.82 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=74.9
Q ss_pred HHHHhhhcCCcEEEEeCCCC-------------CCCHHHHHHHHHHHHhC----CCCeEEcCCCCC-----HHHH---HH
Q 018508 98 LAEISGLAGYDFVVVDMEHG-------------PGGISDALACLHALAAT----GTPAILRLPESC-----PTWA---KK 152 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~-------------~~~~~~a~~~i~a~~~~----g~~~iVRV~~~~-----~~~i---~~ 152 (355)
.++.+..+|+-.|.|.=+.. ..+.+++..-|+++... ...++.|+...- .+.| +.
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~a 174 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQA 174 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHH
Confidence 36777888988777732311 23555666666665432 233456766531 2334 44
Q ss_pred HHhcCCCeEeecC-CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHH
Q 018508 153 ALDLGPQGVMFPM-IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDI 231 (355)
Q Consensus 153 aLdaGa~GImvP~-Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeI 231 (355)
..++|||+|++|- ..+.++++++++.+.-| +.++ ++++.......+++
T Consensus 175 Y~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p------------------------------~pv~-~~~~~~p~~~~~~l 223 (290)
T TIGR02321 175 YEEAGADAILIHSRQKTPDEILAFVKSWPGK------------------------------VPLV-LVPTAYPQLTEADI 223 (290)
T ss_pred HHHcCCCEEEecCCCCCHHHHHHHHHhcCCC------------------------------CCeE-EecCCCCCCCHHHH
Confidence 6789999999995 69999999999976422 1122 44543333444455
Q ss_pred hccCCccEEEEChhhHHhhc
Q 018508 232 AAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 232 aavpgVD~l~iGp~DLs~sl 251 (355)
.+.-++..+++|+.=+...+
T Consensus 224 ~~lg~~~~v~~g~~~~~aa~ 243 (290)
T TIGR02321 224 AALSKVGIVIYGNHAIRAAV 243 (290)
T ss_pred HHhcCCcEEEEChHHHHHHH
Confidence 55434677888887555443
No 144
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.74 E-value=3.6 Score=41.65 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=43.7
Q ss_pred CHHHHHHhhhcCCcEEEEe-----CCC-C-CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe
Q 018508 95 SPTLAEISGLAGYDFVVVD-----MEH-G-PGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM 162 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilD-----lEh-~-~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm 162 (355)
..+.++.+..+|+|+|+++ .+| + ..+.....+.++ ..+.++++ =+-.+....+++++.|+++||
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~---~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG---ELDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH---HCCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 4467788999999999986 445 2 234444444443 35677776 122356778889999999998
No 145
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.68 E-value=1.3 Score=43.60 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=90.4
Q ss_pred hHHHHHHHc-CCcEEEEEEecCCHHHHHHh-hhcC---------CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEE
Q 018508 74 ESLKYRLQS-NETLYGLFLLSFSPTLAEIS-GLAG---------YDFVVVDMEHGP--GGISDALACLHALAATGTPAIL 140 (355)
Q Consensus 74 n~lk~~L~~-G~~~~gl~v~~~sp~~~e~a-a~~G---------~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iV 140 (355)
+.+-+++.. +-.+..++=..|.-+.+++. ..+| .|.|+|.=+|-. .+.+.+...++.... ...+-|
T Consensus 132 ~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV~~GGG~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~-~~kIeV 210 (294)
T PRK06978 132 RRYVDRIAGTRARILDTRKTLPGLRLAQKYAVRVGGGENQRLALYDGILIKENHIAAAGGVGAALDAAFALNA-GVPVQI 210 (294)
T ss_pred HHHHHHhhCCCcEEEecCCCCCchhHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCC-CCcEEE
Confidence 445555532 22566677677777777764 3444 599999999963 345666666655322 234556
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
.+. +..++..++++|+|.||+=+. ++++++++++.++- + +.||
T Consensus 211 Eve--tleea~eA~~aGaDiImLDnm-spe~l~~av~~~~~------------------------------~----~~lE 253 (294)
T PRK06978 211 EVE--TLAQLETALAHGAQSVLLDNF-TLDMMREAVRVTAG------------------------------R----AVLE 253 (294)
T ss_pred EcC--CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHhhcC------------------------------C----eEEE
Confidence 665 367889999999999999885 79999999987631 1 1244
Q ss_pred cHHH--HHHHHHHhccCCccEEEECh
Q 018508 221 SEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 221 T~~a--v~nieeIaavpgVD~l~iGp 244 (355)
-..| ++|+.++++. |||.|+.|.
T Consensus 254 aSGGIt~~ni~~yA~t-GVD~IS~ga 278 (294)
T PRK06978 254 VSGGVNFDTVRAFAET-GVDRISIGA 278 (294)
T ss_pred EECCCCHHHHHHHHhc-CCCEEEeCc
Confidence 3333 5899999975 899999997
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.67 E-value=7.1 Score=40.76 Aligned_cols=179 Identities=15% Similarity=0.079 Sum_probs=97.2
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC----CCHHHHHHHHHHH---H-hCCC---CeEEcCCCCCHHHHHHHHhcCCCeEee--
Q 018508 97 TLAEISGLAGYDFVVVDMEHGP----GGISDALACLHAL---A-ATGT---PAILRLPESCPTWAKKALDLGPQGVMF-- 163 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~----~~~~~a~~~i~a~---~-~~g~---~~iVRV~~~~~~~i~~aLdaGa~GImv-- 163 (355)
+.++.+...+.+.+.+.-|++- .+..++.+.+..- . ..+. ...|.++......+..++++|++.|++
T Consensus 169 eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~ 248 (486)
T PRK05567 169 EALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVDVLVVDT 248 (486)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCCEEEEEC
Confidence 4566777788888777666652 3334433322110 0 0111 123444443345677888999996654
Q ss_pred cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEC
Q 018508 164 PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMG 243 (355)
Q Consensus 164 P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iG 243 (355)
++-++ +.+...++.++.. ..+-..++..|-|++...++.+. |+|+|-+|
T Consensus 249 a~g~~-~~vl~~i~~i~~~--------------------------~p~~~vi~g~v~t~e~a~~l~~a----Gad~i~vg 297 (486)
T PRK05567 249 AHGHS-EGVLDRVREIKAK--------------------------YPDVQIIAGNVATAEAARALIEA----GADAVKVG 297 (486)
T ss_pred CCCcc-hhHHHHHHHHHhh--------------------------CCCCCEEEeccCCHHHHHHHHHc----CCCEEEEC
Confidence 23222 3344444444321 01123466889999998888763 67888765
Q ss_pred hhhHHhhcCCC-CCCCCHHHHHHHHHHHHHHHhCCCceee--cccCCchhHHHHHHCCCCEEEecchH
Q 018508 244 PLDLSASMGYL-WDPGHRKVREMMRVAEKGVLGGGKAYLA--GFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 244 p~DLs~slG~~-~~~~~p~v~~ai~~iv~aa~a~g~~~~g--~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
-.=-+...+-. ....-|. ..++.++.+++++.+++++. ++ ..+.++.+.+++|.+.+.+|+=.
T Consensus 298 ~g~gs~~~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~viadGGi-~~~~di~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 298 IGPGSICTTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIADGGI-RYSGDIAKALAAGASAVMLGSML 363 (486)
T ss_pred CCCCccccceeecCCCcCH-HHHHHHHHHHhccCCCeEEEcCCC-CCHHHHHHHHHhCCCEEEECccc
Confidence 32111111000 0111232 34566666777666665432 34 45677777889999999998643
No 147
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.51 E-value=4.7 Score=42.46 Aligned_cols=87 Identities=15% Similarity=0.020 Sum_probs=54.7
Q ss_pred chHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcC-CCCCHHH
Q 018508 73 PESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRL-PESCPTW 149 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV-~~~~~~~ 149 (355)
|+..|. ..|+-.++--+.... .+.++.+...|+|+|+||.-|+... ...+.++.++. .+....|=. |-..+..
T Consensus 222 P~a~~d--~~grL~V~~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~--~~~~~i~~ir~~~~~~~~V~aGnV~t~e~ 297 (502)
T PRK07107 222 PLELLD--SSKRYVVGAGINTRDYAERVPALVEAGADVLCIDSSEGYSE--WQKRTLDWIREKYGDSVKVGAGNVVDREG 297 (502)
T ss_pred hhhhhh--hccCeeeeeccChhhHHHHHHHHHHhCCCeEeecCcccccH--HHHHHHHHHHHhCCCCceEEeccccCHHH
Confidence 444443 245666666665433 4678888899999999997777432 22345555443 332233322 2335778
Q ss_pred HHHHHhcCCCeEee
Q 018508 150 AKKALDLGPQGVMF 163 (355)
Q Consensus 150 i~~aLdaGa~GImv 163 (355)
.+.++++||++|.|
T Consensus 298 a~~li~aGAd~I~v 311 (502)
T PRK07107 298 FRYLAEAGADFVKV 311 (502)
T ss_pred HHHHHHcCCCEEEE
Confidence 89999999999977
No 148
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=90.50 E-value=7 Score=36.05 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=71.1
Q ss_pred hHHHHHHHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
.-+++.|....+ +-...... ....++.+.....|.+++|+.-...+--++...++ .......++|=....++..+.+
T Consensus 14 ~gl~~~L~~~~~-~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~-~~~p~~~vvvlt~~~~~~~v~~ 91 (211)
T COG2197 14 EGLRQLLELEPD-LEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLR-ARGPDIKVVVLTAHDDPAYVIR 91 (211)
T ss_pred HHHHHHHhhCCC-CEEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHH-HHCCCCcEEEEeccCCHHHHHH
Confidence 457778876555 44444444 44566777888999999998876544444555555 2233345555555667888999
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
++++|++|.+. |-.+++++.++++.+.
T Consensus 92 al~~Ga~Gyl~-K~~~~~~l~~ai~~v~ 118 (211)
T COG2197 92 ALRAGADGYLL-KDASPEELVEAIRAVA 118 (211)
T ss_pred HHHcCCCEEEe-CCCCHHHHHHHHHHHH
Confidence 99999999875 4478888888887774
No 149
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.20 E-value=10 Score=32.66 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 100 EISGLAGYDFVVVDMEHGPGGISDALACLHALAAT--GTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 100 e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
+.+...|+|+|.+..+|... .+...+++.+++.. +.++++++..........+.+.|++.|.+-
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 47788999999999999642 33444555555433 778888887654332222577899888763
No 150
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.18 E-value=10 Score=34.94 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCeEee--cCCCCH--HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccH
Q 018508 147 PTWAKKALDLGPQGVMF--PMIDSP--EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESE 222 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv--P~Vesa--eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~ 222 (355)
..++..+.++|++.|++ +....+ ++..++++.++.. . .+.+++-+.|+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~---------------------------g-~~~iiv~v~t~ 133 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE---------------------------Y-NCLLMADISTL 133 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH---------------------------h-CCeEEEECCCH
Confidence 34788899999996555 222112 2555566555421 1 24456666676
Q ss_pred HHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeeccc-CCchhHHHHHHCCCCE
Q 018508 223 EGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFA-MPHDAPLEMKSRGYHM 301 (355)
Q Consensus 223 ~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~-~d~~~a~~~~~~G~~~ 301 (355)
+-+..+.+ -|+|.+.++..++...-. ....+ -.+.+.++.+.. +++++.+-. .+++.++.+++.|++.
T Consensus 134 ~ea~~a~~----~G~d~i~~~~~g~t~~~~---~~~~~-~~~~l~~i~~~~---~ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 134 EEALNAAK----LGFDIIGTTLSGYTEETA---KTEDP-DFELLKELRKAL---GIPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred HHHHHHHH----cCCCEEEccCcccccccc---CCCCC-CHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 54433322 378888665443321100 01111 123334333322 455433222 3678899999999999
Q ss_pred EEecchH
Q 018508 302 VSGAVDV 308 (355)
Q Consensus 302 vs~~~D~ 308 (355)
+.+|+-.
T Consensus 203 V~vGsal 209 (219)
T cd04729 203 VVVGSAI 209 (219)
T ss_pred EEEchHH
Confidence 9999653
No 151
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=90.17 E-value=0.62 Score=52.61 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=75.7
Q ss_pred CeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhcc----
Q 018508 159 QGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAV---- 234 (355)
Q Consensus 159 ~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaav---- 234 (355)
..-++||++++.++..+....+.. |. ++ ....+.|++.+||.+.+.|+++|+.-
T Consensus 547 g~yIISmt~~~sdiL~V~~l~k~~--g~------------~~--------~~~~l~VvPLFETi~dL~~a~~il~~ll~~ 604 (974)
T PTZ00398 547 GAYIISMCRNPSDILLVHVFQKEI--LK------------SG--------ASKRQRVVPLLETIESLNSSSKTLEELFSN 604 (974)
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHh--CC------------cC--------CCCCcCeeCCcCCHHHHHhHHHHHHHHHcC
Confidence 358999999999999999888752 21 00 02357899999999999999999841
Q ss_pred -----------CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q 018508 235 -----------DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA 279 (355)
Q Consensus 235 -----------pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~ 279 (355)
.+.=-||+|-.|=+.+-|+.. ..-.+..+..++.+.|+++|++
T Consensus 605 p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~la--a~w~l~~Aq~~L~~~~~~~gV~ 658 (974)
T PTZ00398 605 PWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLT--SAWELYKAQERLSNIARQYGVE 658 (974)
T ss_pred HHHHHHHhhccCCeEEEEEecccccccccHHH--HHHHHHHHHHHHHHHHHHcCCc
Confidence 345689999999887777642 2346889999999999999887
No 152
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.88 E-value=1.4 Score=43.29 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=85.0
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHHh-hhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHh-C--CCCeE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEIS-GLAG---------YDFVVVDMEHGPGGISDALACLHALAA-T--GTPAI 139 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~a-a~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~-~--g~~~i 139 (355)
+.+.+++.+-. .+..+.=..|.-+.+++. ..+| .|.|+|-=+|-..- ....+.++.++. . ...+.
T Consensus 123 ~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~-g~i~~av~~~r~~~~~~~kIe 201 (290)
T PRK06559 123 AAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAV-GSVQKAIAQARAYAPFVKMVE 201 (290)
T ss_pred HHHHHHhcCCCeEEEeecCCCCcchHHHHHHHHhcCCcccCCCCcceEEEcHHHHHhh-ccHHHHHHHHHHhCCCCCeEE
Confidence 44555553222 233444456666666653 3444 48999999996321 123334444332 2 34567
Q ss_pred EcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 140 LRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 140 VRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
|.+. +.+++..++++|+|.||+=+. ++++++++++.++- + +.|
T Consensus 202 VEv~--tleea~~a~~agaDiImLDnm-spe~l~~av~~~~~------------------------------~----~~l 244 (290)
T PRK06559 202 VEVE--SLAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG------------------------------R----SRI 244 (290)
T ss_pred EECC--CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC------------------------------c----eEE
Confidence 7775 357899999999999999985 79999999987641 1 124
Q ss_pred ccHHH--HHHHHHHhccCCccEEEECh
Q 018508 220 ESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 220 ET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
|-..| ++|+.++|+. |||.|+.|.
T Consensus 245 eaSGGI~~~ni~~yA~t-GVD~Is~ga 270 (290)
T PRK06559 245 ECSGNIDMTTISRFRGL-AIDYVSSGS 270 (290)
T ss_pred EEECCCCHHHHHHHHhc-CCCEEEeCc
Confidence 44433 4788999874 899999987
No 153
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.67 E-value=8.5 Score=37.41 Aligned_cols=66 Identities=26% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
.++.+...|+|+|.+.+-..........+.+..+. ..+.+++|..- ......+++.++|+++|.+-
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEc
Confidence 55666778999999987543211001123344443 34678888832 45677899999999999883
No 154
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.57 E-value=8.4 Score=37.77 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhC-CCC---eEEcCCCCC----HHHHHH---HHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCC
Q 018508 119 GGISDALACLHALAAT-GTP---AILRLPESC----PTWAKK---ALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVR 187 (355)
Q Consensus 119 ~~~~~a~~~i~a~~~~-g~~---~iVRV~~~~----~~~i~~---aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~R 187 (355)
.+.+++..-|+++... ..+ .+-|+...- ...|+| -.++|||+|..|-.++.++++++.++++-| .=
T Consensus 130 ~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~~p-l~-- 206 (289)
T COG2513 130 VSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVPVP-LP-- 206 (289)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcCCC-ee--
Confidence 3456666666665322 212 234443321 123444 578999999999999999999999998732 10
Q ss_pred CCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHH
Q 018508 188 GSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMR 267 (355)
Q Consensus 188 g~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~ 267 (355)
.....||. ..+-.++++.+. ||..|++|+.=+.+.+ .++.
T Consensus 207 ------~N~t~~g~---------------------tp~~~~~~L~~~-Gv~~V~~~~~~~raa~------------~a~~ 246 (289)
T COG2513 207 ------ANITEFGK---------------------TPLLTVAELAEL-GVKRVSYGLTAFRAAL------------KAAE 246 (289)
T ss_pred ------eEeeccCC---------------------CCCcCHHHHHhc-CceEEEECcHHHHHHH------------HHHH
Confidence 00111111 023345666665 8999999998776544 4455
Q ss_pred HHHHHHHhCC
Q 018508 268 VAEKGVLGGG 277 (355)
Q Consensus 268 ~iv~aa~a~g 277 (355)
++.+..++.|
T Consensus 247 ~~~~~i~~~g 256 (289)
T COG2513 247 QAAREIRREG 256 (289)
T ss_pred HHHHHHHhcC
Confidence 5555555544
No 155
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.52 E-value=15 Score=36.88 Aligned_cols=223 Identities=14% Similarity=-0.008 Sum_probs=120.9
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcEEEEEEe-cCCHHHHHHhhhcCCcEEEEeCCCCC
Q 018508 40 KIVFPKLKLTPSVSRSPSDLSPGDPLSPSPSPSPESLKYRLQSNETLYGLFLL-SFSPTLAEISGLAGYDFVVVDMEHGP 118 (355)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~L~~G~~~~gl~v~-~~sp~~~e~aa~~G~D~vilDlEh~~ 118 (355)
...|.++-|-|-.|.--+ -..++.++.=...+- +.+.-|-|++..-+. ....++++.++..|+=.++ |--
T Consensus 7 ~l~f~DVll~P~~s~v~s----R~evdl~~~~~~~~~-~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~i----Hk~ 77 (343)
T TIGR01305 7 KLDFKDVLLRPKRSTLKS----RADVELERTFTFRNS-KQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAI----HKH 77 (343)
T ss_pred CCCccceEEecCcCccCc----HHHceeeEEEccccC-CceeeCCceEecCCCcccCHHHHHHHHHCCCeEEE----eeC
Confidence 356888888887553211 001111111110000 223345566655543 3567788888888876665 544
Q ss_pred CCHHHHHHHHHHHH-hCC--CCeEEcCCCCCHHHHHHHHhcC--CCeEee--cCCCCHHHHHHHHHHcCCCCCCCCCCcc
Q 018508 119 GGISDALACLHALA-ATG--TPAILRLPESCPTWAKKALDLG--PQGVMF--PMIDSPEAAKEAVSYCRFPPSGVRGSAH 191 (355)
Q Consensus 119 ~~~~~a~~~i~a~~-~~g--~~~iVRV~~~~~~~i~~aLdaG--a~GImv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~ 191 (355)
++.++..+.++... ... ..+-|-+.+.+.+.+..++++| ++.|++ .+-+|.-.+ +.++++|..
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i-~~ik~ir~~--------- 147 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFV-EFVKLVREA--------- 147 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHH-HHHHHHHhh---------
Confidence 56666555554422 112 2345666666667788889885 787764 454443333 334444321
Q ss_pred cccccccCCCCccccccCCCceEEEEE-EccHHHHHHHHHHhccCCccEEEEC--hhhHHhhcCCCCCCCCHHHHHHHHH
Q 018508 192 TVVRASGYGIDEGYLSNYEEELLIMCQ-VESEEGVKRAEDIAAVDGVDCVQMG--PLDLSASMGYLWDPGHRKVREMMRV 268 (355)
Q Consensus 192 ~~~ra~~~g~~~~y~~~~n~~i~vi~m-IET~~av~nieeIaavpgVD~l~iG--p~DLs~slG~~~~~~~p~v~~ai~~ 268 (355)
| . ...|++- |-|+++..++-+ + |+|+|-+| |+=-+.---..+ ..-| -+.++..
T Consensus 148 -------~----------p-~~~viaGNV~T~e~a~~Li~--a--GAD~ikVgiGpGSicttR~~~G-vg~p-qltAv~~ 203 (343)
T TIGR01305 148 -------F----------P-EHTIMAGNVVTGEMVEELIL--S--GADIVKVGIGPGSVCTTRTKTG-VGYP-QLSAVIE 203 (343)
T ss_pred -------C----------C-CCeEEEecccCHHHHHHHHH--c--CCCEEEEcccCCCcccCceeCC-CCcC-HHHHHHH
Confidence 0 1 2345554 999999997765 2 78988766 442211100000 1113 3456667
Q ss_pred HHHHHHhCCCce-eecccCCchhHHHHHHCCCCEEEec
Q 018508 269 AEKGVLGGGKAY-LAGFAMPHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 269 iv~aa~a~g~~~-~g~~~~d~~~a~~~~~~G~~~vs~~ 305 (355)
+..+++..++++ .++=....-+..+.+.+|.+++.+|
T Consensus 204 ~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 204 CADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 777776656553 2222223445556678999999999
No 156
>PRK06852 aldolase; Validated
Probab=89.43 E-value=24 Score=34.98 Aligned_cols=94 Identities=23% Similarity=0.161 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCCeEE----cCC----CCCHHHH----HHHHhcCCCeEeecCC-----CCHHHHHHHHHHcCCCCCCCC
Q 018508 125 LACLHALAATGTPAIL----RLP----ESCPTWA----KKALDLGPQGVMFPMI-----DSPEAAKEAVSYCRFPPSGVR 187 (355)
Q Consensus 125 ~~~i~a~~~~g~~~iV----RV~----~~~~~~i----~~aLdaGa~GImvP~V-----esaeea~~vv~a~~~pP~G~R 187 (355)
.+....++..|.++++ |=+ +.++..+ +-+.+.|||-|=++.. .+++..+++++.|--.|.=..
T Consensus 157 ~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvia 236 (304)
T PRK06852 157 AQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCA 236 (304)
T ss_pred HHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEe
Confidence 3445566778888753 422 2234433 5577899999999999 889999999998722221111
Q ss_pred CCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 188 GSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 188 g~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
| | ......+-|+.+.+....-|..|+.+|.|
T Consensus 237 G-----------G----------------~k~~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 237 G-----------G----------------SSTDPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred C-----------C----------------CCCCHHHHHHHHHHHHHHcCCceeeechh
Confidence 1 0 11234567888887766458899999999
No 157
>PRK04302 triosephosphate isomerase; Provisional
Probab=89.39 E-value=11 Score=34.88 Aligned_cols=119 Identities=23% Similarity=0.209 Sum_probs=77.0
Q ss_pred HHHHHhhhcCCcEEEEeC-CCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe-ecC-------C-
Q 018508 97 TLAEISGLAGYDFVVVDM-EHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM-FPM-------I- 166 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDl-Eh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm-vP~-------V- 166 (355)
..++.+...|+|+|++.. |+- ...++....+..+...|..+++=++. ...++++.+.|.+-|- .|. .
T Consensus 76 ~~~~~l~~~G~~~vii~~ser~-~~~~e~~~~v~~a~~~Gl~~I~~v~~--~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINHSERR-LTLADIEAVVERAKKLGLESVVCVNN--PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred hHHHHHHHcCCCEEEEeccccc-cCHHHHHHHHHHHHHCCCeEEEEcCC--HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 357888999999999887 554 34456777777777788888864443 5677777777776443 341 1
Q ss_pred --CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEECh
Q 018508 167 --DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 167 --esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp 244 (355)
.++++++++.+.++... .+-.+....-|=+++-+..+ . ..|+|++.+|.
T Consensus 153 ~~~~~~~i~~~~~~ir~~~-------------------------~~~pvi~GggI~~~e~~~~~---~-~~gadGvlVGs 203 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVN-------------------------PDVKVLCGAGISTGEDVKAA---L-ELGADGVLLAS 203 (223)
T ss_pred CcCCHHHHHHHHHHHHhcc-------------------------CCCEEEEECCCCCHHHHHHH---H-cCCCCEEEEeh
Confidence 35778887777765310 01123444556565555443 3 25899999998
Q ss_pred hhH
Q 018508 245 LDL 247 (355)
Q Consensus 245 ~DL 247 (355)
.=+
T Consensus 204 a~l 206 (223)
T PRK04302 204 GVV 206 (223)
T ss_pred HHh
Confidence 754
No 158
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=89.32 E-value=0.95 Score=50.86 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=76.2
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc----
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA---- 233 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa---- 233 (355)
...+++||+++++++.++...++.. |.-.. .+ ....+.|++.+||.+.+.|+++|+.
T Consensus 487 i~~yIiSmt~~~sdvL~v~~l~k~~--gl~~~--------~~---------~~~~l~VvPLFEti~dL~~a~~il~~l~~ 547 (911)
T PRK00009 487 IGAYIISMAETVSDVLEVLLLLKEA--GLLDP--------AA---------ARAPLPVVPLFETIEDLRNAADVMRQLLS 547 (911)
T ss_pred hceEeecCCCCHHHHHHHHHHHHHc--CCCcc--------CC---------CCCCcCeECCcCCHHHHHhHHHHHHHHHc
Confidence 3579999999999999999888763 21000 00 0125789999999999999999984
Q ss_pred cC----------CccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q 018508 234 VD----------GVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA 279 (355)
Q Consensus 234 vp----------gVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~ 279 (355)
.| +.=-||+|-.|=+.+-|+.. ..-.+..+..++.+.++++|++
T Consensus 548 ~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~la--s~w~l~~Aq~~L~~~~~~~gv~ 601 (911)
T PRK00009 548 LPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLA--SNWALYRAQEALVELAEKHGVR 601 (911)
T ss_pred ChHHHHHHhcCCCeEEEEeecccccccccHHH--HHHHHHHHHHHHHHHHHHcCCc
Confidence 22 13479999999887777642 2346889999999999999977
No 159
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.29 E-value=1.2 Score=43.47 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=85.8
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHHh-hhcC---------CcEEEEeCCCCCC---CHHHHHHHHHHHHh-CC--C
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEIS-GLAG---------YDFVVVDMEHGPG---GISDALACLHALAA-TG--T 136 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~a-a~~G---------~D~vilDlEh~~~---~~~~a~~~i~a~~~-~g--~ 136 (355)
+.+-++++.-+ .+..+.=.+|.-+.+++. ..+| +|.|+|-=+|-.. +.+...+.+..++. .+ .
T Consensus 115 ~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~ 194 (281)
T PRK06543 115 AAFVDAVNGTRARIVDTRKTTPGLRIFERYAVRCGGGHNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTT 194 (281)
T ss_pred HHHHHHhcCCCCEEEeCCCCCCcchHHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCC
Confidence 44555554311 334444456666666653 3444 5999999999642 32344555554443 22 3
Q ss_pred CeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 137 PAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 137 ~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
.+.|=|. +..++..++++|+|.||+=+. +++++++++..++- ..
T Consensus 195 kIeVEv~--slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~------------------------------~~--- 238 (281)
T PRK06543 195 HVEVEVD--RLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG------------------------------RA--- 238 (281)
T ss_pred cEEEEeC--CHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC------------------------------Ce---
Confidence 3444444 467789999999999999985 79999999997641 01
Q ss_pred EEEccHHH--HHHHHHHhccCCccEEEECh
Q 018508 217 CQVESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 217 ~mIET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
.||-..| ++|+.++++. |||.|++|.
T Consensus 239 -~leaSGgI~~~ni~~yA~t-GVD~Is~ga 266 (281)
T PRK06543 239 -IVEASGNVNLNTVGAIAST-GVDVISVGA 266 (281)
T ss_pred -EEEEECCCCHHHHHHHHhc-CCCEEEeCc
Confidence 2444444 5799999975 899999997
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=89.06 E-value=13 Score=39.26 Aligned_cols=177 Identities=14% Similarity=0.036 Sum_probs=96.3
Q ss_pred HHHHHHhhhcCCcEE-EEeCCCCC---CCHHHHHHHHHH---H----HhCCC---CeEEcCCCCCHHHHHHHHhcCCCeE
Q 018508 96 PTLAEISGLAGYDFV-VVDMEHGP---GGISDALACLHA---L----AATGT---PAILRLPESCPTWAKKALDLGPQGV 161 (355)
Q Consensus 96 p~~~e~aa~~G~D~v-ilDlEh~~---~~~~~a~~~i~a---~----~~~g~---~~iVRV~~~~~~~i~~aLdaGa~GI 161 (355)
.+.++.+...+...+ ++|-++-. ....++...+.. . +..|. ...|-+.....+.+..++++|++-|
T Consensus 185 ~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i 264 (505)
T PLN02274 185 EEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVV 264 (505)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEE
Confidence 456777888888764 56644432 334443333221 0 01111 2345555555677888999999987
Q ss_pred ee--cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE-EEEccHHHHHHHHHHhccCCcc
Q 018508 162 MF--PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM-CQVESEEGVKRAEDIAAVDGVD 238 (355)
Q Consensus 162 mv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi-~mIET~~av~nieeIaavpgVD 238 (355)
.+ ++-++...+ +.++.+|.. | ....++ .-|-|++...++.+ -|+|
T Consensus 265 ~iD~~~g~~~~~~-~~i~~ik~~----------------~-----------p~~~vi~g~v~t~e~a~~a~~----aGaD 312 (505)
T PLN02274 265 VLDSSQGDSIYQL-EMIKYIKKT----------------Y-----------PELDVIGGNVVTMYQAQNLIQ----AGVD 312 (505)
T ss_pred EEeCCCCCcHHHH-HHHHHHHHh----------------C-----------CCCcEEEecCCCHHHHHHHHH----cCcC
Confidence 74 555554433 334444310 0 123444 46999999888876 2899
Q ss_pred EEEEC--hhhH--HhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce-eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 239 CVQMG--PLDL--SASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 239 ~l~iG--p~DL--s~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+|.+| ++=- +...+..+.+. ..++..+.+.+++.++++ +.+=..++.++.+.+++|.+.+.+|+=.
T Consensus 313 ~i~vg~g~G~~~~t~~~~~~g~~~----~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~ 383 (505)
T PLN02274 313 GLRVGMGSGSICTTQEVCAVGRGQ----ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFL 383 (505)
T ss_pred EEEECCCCCccccCccccccCCCc----ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 99876 3211 11100001111 123344444555555553 3332345677888889999999998643
No 161
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=88.70 E-value=0.27 Score=44.33 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=77.5
Q ss_pred HHHHHHHcCC-cEEEEEEecCCHHHHH-HhhhcC---------CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCC-eEE
Q 018508 75 SLKYRLQSNE-TLYGLFLLSFSPTLAE-ISGLAG---------YDFVVVDMEHGP--GGISDALACLHALAATGTP-AIL 140 (355)
Q Consensus 75 ~lk~~L~~G~-~~~gl~v~~~sp~~~e-~aa~~G---------~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~-~iV 140 (355)
.+.++++... .+++++=..|.-+.++ .+..+| .|.++|.-+|-. .+...+.+.++... .... +.|
T Consensus 7 ~~v~~a~~~~~~i~~TRKt~Pg~r~l~~~Av~~GGg~~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~-~~~~~I~V 85 (169)
T PF01729_consen 7 RMVDAAKGTKIRIADTRKTIPGLRPLEKYAVLAGGGDNHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAA-PEKKKIEV 85 (169)
T ss_dssp HHHHHTTTSSSEEEEGSGS-TTTHHHHHHHHHHTTSBHHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHS-TTTSEEEE
T ss_pred HHHHHhCCCCEEEeecCCCCcccCHHHHHHHHhcCceeEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhC-CCCceEEE
Confidence 4444444432 2334443444444443 333333 377887777762 23444444444321 2233 566
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
.+.. ..++..++++|++.||+=.. ++++++++++.++-- +.+ ++||
T Consensus 86 Ev~~--~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~---------------------------~~~----v~ie 131 (169)
T PF01729_consen 86 EVEN--LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELREL---------------------------NPR----VKIE 131 (169)
T ss_dssp EESS--HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHH---------------------------TTT----SEEE
T ss_pred EcCC--HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhc---------------------------CCc----EEEE
Confidence 6654 67789999999999999886 789999999976521 011 2334
Q ss_pred cHHH--HHHHHHHhccCCccEEEEChh
Q 018508 221 SEEG--VKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 221 T~~a--v~nieeIaavpgVD~l~iGp~ 245 (355)
-..| ++|+.++++. |||++.+|..
T Consensus 132 ~SGGI~~~ni~~ya~~-gvD~isvg~~ 157 (169)
T PF01729_consen 132 ASGGITLENIAEYAKT-GVDVISVGSL 157 (169)
T ss_dssp EESSSSTTTHHHHHHT-T-SEEEECHH
T ss_pred EECCCCHHHHHHHHhc-CCCEEEcChh
Confidence 3333 3688888875 7999999974
No 162
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.63 E-value=2.3 Score=41.42 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=78.9
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC---------CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG---------YDFVVVDMEHGP--GGISDALACLHALAATGTPAIL 140 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iV 140 (355)
+++.+++..-. .++++.=..|.-+.+++ +...| .|.++|.-+|-. .+...+...++.. ..+..+-|
T Consensus 116 ~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~-~~~~~I~V 194 (277)
T PRK05742 116 RHYADLVAGTQVKLLDTRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRI-APGKPVEV 194 (277)
T ss_pred HHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHhcCCccccCCCcccEEecHHHHHHhCCHHHHHHHHHHh-CCCCeEEE
Confidence 45566663211 23344434566665554 44444 488888888842 1222222222221 12233444
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE--E
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC--Q 218 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~--m 218 (355)
-+ .+..++..++++|+|.||+... ++++++++++.++ + ++.+.+ -
T Consensus 195 Ev--~tleea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~--~----------------------------~i~leAsGG 241 (277)
T PRK05742 195 EV--ESLDELRQALAAGADIVMLDEL-SLDDMREAVRLTA--G----------------------------RAKLEASGG 241 (277)
T ss_pred Ee--CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC--C----------------------------CCcEEEECC
Confidence 44 3477889999999999999764 8999999998653 1 112222 2
Q ss_pred EccHHHHHHHHHHhccCCccEEEECh
Q 018508 219 VESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 219 IET~~av~nieeIaavpgVD~l~iGp 244 (355)
| | .+|+.++++. |+|+|.+|.
T Consensus 242 I-t---~~ni~~~a~t-GvD~Isvg~ 262 (277)
T PRK05742 242 I-N---ESTLRVIAET-GVDYISIGA 262 (277)
T ss_pred C-C---HHHHHHHHHc-CCCEEEECh
Confidence 4 2 5788888874 899999997
No 163
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=88.50 E-value=22 Score=33.49 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred HHHHHHhcCCCeEeecC--CCCHH-HHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHH
Q 018508 149 WAKKALDLGPQGVMFPM--IDSPE-AAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGV 225 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~--Vesae-ea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av 225 (355)
.+..+.++|++-|-+=- =+.+. .+.++++..+|| +.++++=|-|.+=.
T Consensus 90 eVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~-----------------------------~~l~MAD~St~ee~ 140 (229)
T COG3010 90 EVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYP-----------------------------GQLAMADCSTFEEG 140 (229)
T ss_pred HHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcC-----------------------------CcEEEeccCCHHHH
Confidence 35666677776554421 12233 556666665554 35788888888776
Q ss_pred HHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee-ecccCCchhHHHHHHCCCCEEEe
Q 018508 226 KRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL-AGFAMPHDAPLEMKSRGYHMVSG 304 (355)
Q Consensus 226 ~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~-g~~~~d~~~a~~~~~~G~~~vs~ 304 (355)
.|+..+ |+| |+|+- |+-..++...+..|.+. .+ +.+.+.|...+ -|=+.+|+.++..++.|...+++
T Consensus 141 l~a~~~----G~D--~IGTT-LsGYT~~~~~~~~pDf~-lv----k~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 141 LNAHKL----GFD--IIGTT-LSGYTGYTEKPTEPDFQ-LV----KQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred HHHHHc----CCc--EEecc-cccccCCCCCCCCCcHH-HH----HHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 666543 566 45653 55555544455566543 22 33333555433 23456799999999999999999
Q ss_pred cchHHHHHHHHHH
Q 018508 305 AVDVGLFRSAAVE 317 (355)
Q Consensus 305 ~~D~~ll~~~~~~ 317 (355)
|+-++-...-.+.
T Consensus 209 GsAITRp~~It~~ 221 (229)
T COG3010 209 GSAITRPEEITQW 221 (229)
T ss_pred CcccCCHHHHHHH
Confidence 9877654444333
No 164
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=88.50 E-value=12 Score=38.89 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=46.2
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
+|.-+..+...|+|.|+|=. +..+.+++.+++..+..-|..++|=|.. ...+.+++++|+.-|-+-.
T Consensus 121 d~~QI~ea~~~GADavLLI~--~~L~~~~l~~l~~~a~~lGl~~lvEvh~--~~El~~al~~~a~iiGiNn 187 (454)
T PRK09427 121 DPYQIYLARYYGADAILLML--SVLDDEQYRQLAAVAHSLNMGVLTEVSN--EEELERAIALGAKVIGINN 187 (454)
T ss_pred CHHHHHHHHHcCCCchhHHH--HhCCHHHHHHHHHHHHHcCCcEEEEECC--HHHHHHHHhCCCCEEEEeC
Confidence 55666666677777766422 2345567777777777888888887764 6678888888887665543
No 165
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=88.44 E-value=13 Score=38.13 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE-EE
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC-QV 219 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~-mI 219 (355)
.+.+.....+..+.++|++.+.+=-..+.+.++++++.++.. ...+++ |+
T Consensus 234 K~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~-----------------------------GikvgVD~l 284 (391)
T PRK13307 234 KTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKT-----------------------------GIYSILDML 284 (391)
T ss_pred cccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc-----------------------------CCEEEEEEc
Confidence 344433333678889999998886656666788888877631 123455 66
Q ss_pred ccHHHHHHHHHHhccCCccEEEECh-hhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGP-LDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKS 296 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp-~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~ 296 (355)
....-++.++++ ..++|.|.+++ -|= | ++ .+.+ .-++++.+. ..+.. +.||+ +.+.++.+++
T Consensus 285 np~tp~e~i~~l--~~~vD~Vllht~vdp----~--~~--~~~~-~kI~~ikk~--~~~~~I~VdGGI--~~eti~~l~~ 349 (391)
T PRK13307 285 NVEDPVKLLESL--KVKPDVVELHRGIDE----E--GT--EHAW-GNIKEIKKA--GGKILVAVAGGV--RVENVEEALK 349 (391)
T ss_pred CCCCHHHHHHHh--hCCCCEEEEccccCC----C--cc--cchH-HHHHHHHHh--CCCCcEEEECCc--CHHHHHHHHH
Confidence 555556777777 34789998885 221 1 11 1222 222222111 11211 23444 3577888999
Q ss_pred CCCCEEEecchHHHHHHHHHHHHHHHHHhcCC
Q 018508 297 RGYHMVSGAVDVGLFRSAAVEDVARFKMNLTD 328 (355)
Q Consensus 297 ~G~~~vs~~~D~~ll~~~~~~~~~~~r~~~~~ 328 (355)
.|.+.+.+|+-+.- ..-.++.+..++..++.
T Consensus 350 aGADivVVGsaIf~-a~Dp~~aak~l~~~i~~ 380 (391)
T PRK13307 350 AGADILVVGRAITK-SKDVRRAAEDFLNKLKP 380 (391)
T ss_pred cCCCEEEEeHHHhC-CCCHHHHHHHHHHhhcc
Confidence 99999999965321 12234555666665533
No 166
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=88.32 E-value=3.3 Score=41.75 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=53.0
Q ss_pred cCCcEEEEEEecCC--HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHHHHHHHHhcCC
Q 018508 82 SNETLYGLFLLSFS--PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESCPTWAKKALDLGP 158 (355)
Q Consensus 82 ~G~~~~gl~v~~~s--p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~~i~~aLdaGa 158 (355)
.++..++.-+.... -+.++.+..+|+|+++||.-|+-. +...++++.++ ..+..+++==|-..++..+.++++|+
T Consensus 94 ~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s--~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS--EHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp TSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS--HHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-
T ss_pred cccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH--HHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCC
Confidence 46777888887654 678888889999999999999843 33334555553 34433333224446778899999999
Q ss_pred CeEeec
Q 018508 159 QGVMFP 164 (355)
Q Consensus 159 ~GImvP 164 (355)
++|.|=
T Consensus 172 d~vkVG 177 (352)
T PF00478_consen 172 DAVKVG 177 (352)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 988775
No 167
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=88.21 E-value=3.2 Score=38.89 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=62.6
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHH----HHHHHHHHhCCCCeEEcCCCCCH
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDA----LACLHALAATGTPAILRLPESCP 147 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a----~~~i~a~~~~g~~~iVRV~~~~~ 147 (355)
.+.....++...+-.+|+-+. +.+.++.+...|+|||.+--=.....|+.. .+.+..+......|+|=|.+.++
T Consensus 92 ~~~~~ar~~~~~~~iIG~S~h--~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~~ 169 (211)
T COG0352 92 MPLAEARELLGPGLIIGLSTH--DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGINL 169 (211)
T ss_pred cchHHHHHhcCCCCEEEeecC--CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCCH
Confidence 355555566666777887655 899999999999999998532222222222 22334444444467888999999
Q ss_pred HHHHHHHhcCCCeEee
Q 018508 148 TWAKKALDLGPQGVMF 163 (355)
Q Consensus 148 ~~i~~aLdaGa~GImv 163 (355)
..+..+++.|++||-+
T Consensus 170 ~nv~~v~~~Ga~gVAv 185 (211)
T COG0352 170 ENVPEVLEAGADGVAV 185 (211)
T ss_pred HHHHHHHHhCCCeEEe
Confidence 9999999999999753
No 168
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=88.19 E-value=3.5 Score=39.23 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCC---------------H----HHH---HHHHhc
Q 018508 99 AEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESC---------------P----TWA---KKALDL 156 (355)
Q Consensus 99 ~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~---------------~----~~i---~~aLda 156 (355)
++.+..+|++.|-| |++. +....++++...+..++.|+...- . ..| +...++
T Consensus 95 ~~~l~~aGa~gv~i--ED~~----~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 95 AKTFMRAGAAGVKI--EGGE----WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHHHcCCcEEEE--cCcH----HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 56677789887765 4442 333456666666788888986520 1 123 345689
Q ss_pred CCCeEeecCCCCHHHHHHHHHHcCCC
Q 018508 157 GPQGVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 157 Ga~GImvP~Vesaeea~~vv~a~~~p 182 (355)
||++|++|.+ +.++++++.+.+.-|
T Consensus 169 GAd~i~~e~~-~~e~~~~i~~~~~~P 193 (240)
T cd06556 169 GADLIVMECV-PVELAKQITEALAIP 193 (240)
T ss_pred CCCEEEEcCC-CHHHHHHHHHhCCCC
Confidence 9999999999 999999999986543
No 169
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=88.02 E-value=17 Score=33.85 Aligned_cols=70 Identities=20% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKE 174 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~ 174 (355)
.++++..+|.|.+++---.+. +.+...+.+.+++. ...|+++=+.+.+ .+--++|++++|-+=+..+...
T Consensus 16 ia~~v~~~gtDaI~VGGS~gv-t~~~~~~~v~~ik~~~~lPvilfp~~~~------~i~~~aD~~~~~sllns~~~~~ 86 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSLGI-VESNLDQTVKKIKKITNLPVILFPGNVN------GLSRYADAVFFMSLLNSADTYF 86 (205)
T ss_pred HHHHHHhcCCCEEEEcCcCCC-CHHHHHHHHHHHHhhcCCCEEEECCCcc------ccCcCCCEEEEEEeecCCCcch
Confidence 455788899999999766543 67888888888875 6678877433322 2236799999999866555443
No 170
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=87.66 E-value=21 Score=32.35 Aligned_cols=88 Identities=18% Similarity=0.015 Sum_probs=58.0
Q ss_pred EecCCHHHHHHhhhcCCcEEEEeC-CCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCC
Q 018508 91 LLSFSPTLAEISGLAGYDFVVVDM-EHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMID 167 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vilDl-Eh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ve 167 (355)
+.+.+++.++.+...|+|++=+-. +.++ .+.++++.+...+...-..+.|=+|+.-......+...|+++|-+-.-+
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 456789999999999999976554 4444 3466677666655431123333345432333455667899999998888
Q ss_pred CHHHHHHHHHH
Q 018508 168 SPEAAKEAVSY 178 (355)
Q Consensus 168 saeea~~vv~a 178 (355)
+++.++.+.+.
T Consensus 84 ~~~~~~~l~~~ 94 (203)
T cd00405 84 SPEYCAQLRAR 94 (203)
T ss_pred CHHHHHHHHhh
Confidence 88777776554
No 171
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.58 E-value=5.1 Score=42.10 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=50.2
Q ss_pred ecCCHHHHHHhhhcCCcEEEEeCCCCC------------CCHHHHHHHHHHHHhCCCCeEE--cCCCCCHHHHHHHHhcC
Q 018508 92 LSFSPTLAEISGLAGYDFVVVDMEHGP------------GGISDALACLHALAATGTPAIL--RLPESCPTWAKKALDLG 157 (355)
Q Consensus 92 ~~~sp~~~e~aa~~G~D~vilDlEh~~------------~~~~~a~~~i~a~~~~g~~~iV--RV~~~~~~~i~~aLdaG 157 (355)
+..+++.++.+..+|+|+|.+.+..+. .......++.+.++..+.+++. .|. .+..+.+++.+|
T Consensus 289 ~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~--~~~di~kAla~G 366 (495)
T PTZ00314 289 NVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIK--NSGDICKALALG 366 (495)
T ss_pred CcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCC--CHHHHHHHHHcC
Confidence 677889999999999999998776542 1122223344455556666654 332 467899999999
Q ss_pred CCeEeecC
Q 018508 158 PQGVMFPM 165 (355)
Q Consensus 158 a~GImvP~ 165 (355)
|++||+=-
T Consensus 367 A~~Vm~G~ 374 (495)
T PTZ00314 367 ADCVMLGS 374 (495)
T ss_pred CCEEEECc
Confidence 99999743
No 172
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=87.38 E-value=14 Score=35.40 Aligned_cols=178 Identities=17% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCC-----------HHHHHHHHhcCCCeEee-cC
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESC-----------PTWAKKALDLGPQGVMF-PM 165 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~-----------~~~i~~aLdaGa~GImv-P~ 165 (355)
.++.+...|+|.|+++--. ++.....+ ..+...+||+.... ...+.++++.|++.|.+ -+
T Consensus 44 ~~~~a~~~~~~av~v~~~~-------~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~ 115 (267)
T PRK07226 44 TVNKVAEGGADAVLMHKGL-------ARHGHRGY-GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN 115 (267)
T ss_pred HHHHHHhcCCCEEEeCHhH-------Hhhhcccc-CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe
Confidence 5677788889999987311 11111111 23566777776321 12368899999986443 22
Q ss_pred CC------CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE-------Ecc---HHHHHHHH
Q 018508 166 ID------SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ-------VES---EEGVKRAE 229 (355)
Q Consensus 166 Ve------saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m-------IET---~~av~nie 229 (355)
+. ..++++++++.|+. || +.++++ +|+ ++-+..+-
T Consensus 116 ~g~~~~~~~~~~~~~v~~~~~~-----------------~g------------~pl~vi~~~~g~~~e~~~~~~~i~~a~ 166 (267)
T PRK07226 116 VGSETEAEMLEDLGEVAEECEE-----------------WG------------MPLLAMMYPRGPGIKNEYDPEVVAHAA 166 (267)
T ss_pred cCChhHHHHHHHHHHHHHHHHH-----------------cC------------CcEEEEEecCCCccCCCccHHHHHHHH
Confidence 22 22345556665531 11 112222 343 23233333
Q ss_pred HHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCC-chh----HHHHHHCCCCEEEe
Q 018508 230 DIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMP-HDA----PLEMKSRGYHMVSG 304 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d-~~~----a~~~~~~G~~~vs~ 304 (355)
.++.--|.|.|=.+ +.+ .+ +.+++++..++ ..++..||+..+ .++ +...++.|.+++++
T Consensus 167 ~~a~e~GAD~vKt~---------~~~---~~---~~l~~~~~~~~-ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 167 RVAAELGADIVKTN---------YTG---DP---ESFREVVEGCP-VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred HHHHHHCCCEEeeC---------CCC---CH---HHHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 44433488888544 111 12 34455554432 334457777643 333 34446999999988
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCC
Q 018508 305 AVDVGLFRSAAVEDVARFKMNLTDD 329 (355)
Q Consensus 305 ~~D~~ll~~~~~~~~~~~r~~~~~~ 329 (355)
+..+.-- .-..+.+.+++..+.++
T Consensus 231 gr~i~~~-~~p~~~~~~l~~~v~~~ 254 (267)
T PRK07226 231 GRNVFQH-EDPEAITRAISAVVHEG 254 (267)
T ss_pred hhhhhcC-CCHHHHHHHHHHHHhCC
Confidence 8776432 22455667777766544
No 173
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.35 E-value=15 Score=33.62 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=46.4
Q ss_pred EEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC-------------CCHHHHHHHHHHHHh-CCCCeEEcCCCC--C
Q 018508 87 YGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP-------------GGISDALACLHALAA-TGTPAILRLPES--C 146 (355)
Q Consensus 87 ~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~-------------~~~~~a~~~i~a~~~-~g~~~iVRV~~~--~ 146 (355)
+..-+.+.+|+ .++.+..+|||.|=|.+-|.. .+.+.+.+.+++++. .+.++.|+++.. .
T Consensus 57 ~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~ 136 (231)
T cd02801 57 LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDD 136 (231)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCC
Confidence 33334456676 445566779999999876521 134445666776643 345666765432 2
Q ss_pred H----HHHHHHHhcCCCeEee
Q 018508 147 P----TWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~----~~i~~aLdaGa~GImv 163 (355)
. ..++.+.+.|++.|.+
T Consensus 137 ~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 137 EEETLELAKALEDAGASALTV 157 (231)
T ss_pred chHHHHHHHHHHHhCCCEEEE
Confidence 1 2345666789998876
No 174
>PRK08185 hypothetical protein; Provisional
Probab=87.34 E-value=31 Score=33.77 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=112.6
Q ss_pred HHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC-C
Q 018508 76 LKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES-C 146 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~-~ 146 (355)
+-++-++++..++.|. ..+.+ .++.+-..+...|+ .+-.+. ...+ +..+++. ++....|+.|=.... +
T Consensus 4 ~L~~A~~~~yaV~AfN-~~n~e~~~avi~AAee~~sPvIl-~~~~~~~~~~~~~-~~~~~~~~a~~~~vPV~lHLDHg~~ 80 (283)
T PRK08185 4 LLKVAKEHQFAVGAFN-VADSCFLRAVVEEAEANNAPAII-AIHPNELDFLGDN-FFAYVRERAKRSPVPFVIHLDHGAT 80 (283)
T ss_pred HHHHHHHcCceEEEEE-eCCHHHHHHHHHHHHHhCCCEEE-EeCcchhhhccHH-HHHHHHHHHHHCCCCEEEECCCCCC
Confidence 3344556778888874 44444 33455567777544 443331 2333 5555554 456778888877665 4
Q ss_pred HHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc
Q 018508 147 PTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES 221 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET 221 (355)
...+.++++.|...||+ |.=++.+..+++++.++.. |... ..-.|. +........+..-.+.
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~-----gv~v----E~ElG~----vg~~e~~~~~~~~~~~ 147 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKV-----GVSV----EGELGT----IGNTGTSIEGGVSEII 147 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCeE----EEEEee----ccCccccccccccccc
Confidence 67899999999998886 7777777888888887621 1110 000111 0000000000000000
Q ss_pred HHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCC
Q 018508 222 EEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRG 298 (355)
Q Consensus 222 ~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G 298 (355)
-.-.+.+.++..--|+|.|.+.-+-- =|.......|.+ .+.++++.++. +++ .-|+...+.++.++.++.|
T Consensus 148 ~t~peea~~f~~~TgvD~LAvaiGt~---HG~y~~~~kp~L~~e~l~~I~~~~---~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 148 YTDPEQAEDFVSRTGVDTLAVAIGTA---HGIYPKDKKPELQMDLLKEINERV---DIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCHHHHHHHHHhhCCCEEEeccCcc---cCCcCCCCCCCcCHHHHHHHHHhh---CCCEEEECCCCCCHHHHHHHHHCC
Confidence 11233445555434789877622211 111111001111 23344443332 444 2444555568889999999
Q ss_pred CCEEEecchHH
Q 018508 299 YHMVSGAVDVG 309 (355)
Q Consensus 299 ~~~vs~~~D~~ 309 (355)
++-+.+++|..
T Consensus 222 I~KiNi~T~l~ 232 (283)
T PRK08185 222 VGKINISSDMK 232 (283)
T ss_pred CeEEEeChHHH
Confidence 99999999963
No 175
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=87.19 E-value=17 Score=32.56 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=60.6
Q ss_pred hHHHHHHHc-CC-cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCC---CHHHHHHHHHHHHhCCCCeEEcCCCCCHH
Q 018508 74 ESLKYRLQS-NE-TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPG---GISDALACLHALAATGTPAILRLPESCPT 148 (355)
Q Consensus 74 n~lk~~L~~-G~-~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~---~~~~a~~~i~a~~~~g~~~iVRV~~~~~~ 148 (355)
..+++.|.. +. ..++.+ .+.....+.+....+|.|++|+.-... +--+....++.. ....+++|=....+..
T Consensus 17 ~~l~~~L~~~~~~~~v~~~--~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~-~~~~~iIvls~~~~~~ 93 (216)
T PRK10840 17 FGIRKSLEQIEWVNVVGEF--EDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH-FPSLSIIVLTMNNNPA 93 (216)
T ss_pred HHHHHHHhcCCCCEEEEEE--CCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH-CCCCcEEEEEecCCHH
Confidence 346677754 22 122222 223345566666779999999865431 222222222221 2334555545555677
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
.+.++++.|++|++. +-.+++++..+++.+.
T Consensus 94 ~~~~a~~~Ga~~yl~-K~~~~~~l~~ai~~v~ 124 (216)
T PRK10840 94 ILSAVLDLDIEGIVL-KQGAPTDLPKALAALQ 124 (216)
T ss_pred HHHHHHHCCCeEEEE-CCCCHHHHHHHHHHHH
Confidence 788999999999865 4567888888887764
No 176
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.15 E-value=1.2 Score=43.58 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=82.5
Q ss_pred chHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHh--CCCCeE
Q 018508 73 PESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG---------YDFVVVDMEHGPGGISDALACLHALAA--TGTPAI 139 (355)
Q Consensus 73 ~n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~--~g~~~i 139 (355)
.+++.+++...+ .++++.=..|.-+.+++ +...| .|.|+|.=+|-..- ....+.+..++. ......
T Consensus 125 t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~-G~i~~ai~~~r~~~~~~kIe 203 (289)
T PRK07896 125 TAAWVDAVAGTKAKIRDTRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAA-GSVVAALRAVRAAAPDLPCE 203 (289)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCcchHHHHHHHHhCCCccccCCCcceeeecHHHHHHh-CcHHHHHHHHHHhCCCCCEE
Confidence 345666663222 23333334555555554 44444 58888888884211 122333333332 223455
Q ss_pred EcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 140 LRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 140 VRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
|=|. +..+...++++|++.||+=+.. +++++++++.++.. +.++ .|
T Consensus 204 VEv~--tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~---------------------------~~~v----~i 249 (289)
T PRK07896 204 VEVD--SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDAR---------------------------APTV----LL 249 (289)
T ss_pred EEcC--CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhcc---------------------------CCCE----EE
Confidence 5554 3557888999999999999865 99999999976521 1122 35
Q ss_pred ccHHH--HHHHHHHhccCCccEEEECh
Q 018508 220 ESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 220 ET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
|-..| ++|+.++++. |||.|++|.
T Consensus 250 eaSGGI~~~ni~~yA~t-GvD~Is~ga 275 (289)
T PRK07896 250 ESSGGLTLDTAAAYAET-GVDYLAVGA 275 (289)
T ss_pred EEECCCCHHHHHHHHhc-CCCEEEeCh
Confidence 55554 4789999975 899999997
No 177
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=87.12 E-value=3.8 Score=39.93 Aligned_cols=134 Identities=25% Similarity=0.307 Sum_probs=82.7
Q ss_pred HHHHHHHcCC-cEEEEEEecCCHHHHHHhh-hcC---------CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEEc
Q 018508 75 SLKYRLQSNE-TLYGLFLLSFSPTLAEISG-LAG---------YDFVVVDMEHGP--GGISDALACLHALAATGTPAILR 141 (355)
Q Consensus 75 ~lk~~L~~G~-~~~gl~v~~~sp~~~e~aa-~~G---------~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iVR 141 (355)
++-++++.-+ .+..+-=.+|.-+.+|+.+ .+| .|.|+|==-|-. .+..++....++ ..+-.+-|=
T Consensus 115 ~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GGG~nHR~gLsDavliKDNHia~~g~i~~Av~~aR~--~~~~~~kIE 192 (280)
T COG0157 115 RMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGGGDNHRFGLSDAVLIKDNHIAAAGSITEAVRRARA--AAPFTKKIE 192 (280)
T ss_pred HHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcCCccccCCCcceEEehhhHHHHhccHHHHHHHHHH--hCCCCceEE
Confidence 3444554333 2333333567778888754 333 377777666652 233333333332 233333344
Q ss_pred CCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc
Q 018508 142 LPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES 221 (355)
Q Consensus 142 V~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET 221 (355)
|--.+.+++.+++.+|+|-||+=.- ++||++++++.++-. + -+.+|-
T Consensus 193 VEvesle~~~eAl~agaDiImLDNm-~~e~~~~av~~l~~~-----~---------------------------~~~lEa 239 (280)
T COG0157 193 VEVESLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLGLA-----G---------------------------RALLEA 239 (280)
T ss_pred EEcCCHHHHHHHHHcCCCEEEecCC-CHHHHHHHHHHhccC-----C---------------------------ceEEEE
Confidence 5555678999999999999999884 799999999986321 1 112333
Q ss_pred HHH--HHHHHHHhccCCccEEEECh
Q 018508 222 EEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 222 ~~a--v~nieeIaavpgVD~l~iGp 244 (355)
-.| ++|+.+++.. |||.|++|.
T Consensus 240 SGgIt~~ni~~yA~t-GVD~IS~ga 263 (280)
T COG0157 240 SGGITLENIREYAET-GVDVISVGA 263 (280)
T ss_pred eCCCCHHHHHHHhhc-CCCEEEeCc
Confidence 332 4789999975 899999996
No 178
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.88 E-value=33 Score=33.61 Aligned_cols=213 Identities=17% Similarity=0.162 Sum_probs=113.8
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~ 145 (355)
..+-+.-++++..++.|. ..+.+. ++.+...+...|+ .+-.+. ...+.+..+++. ++....|+.+=....
T Consensus 7 k~il~~A~~~~yaV~AfN-~~n~e~~~avi~AAee~~sPvIi-q~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg 84 (284)
T PRK09195 7 KQMLNNAQRGGYAVPAFN-IHNLETMQVVVETAAELHSPVII-AGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH 84 (284)
T ss_pred HHHHHHHHHcCceEEEEE-eCCHHHHHHHHHHHHHhCCCEEE-EcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334444556777777774 444443 3455566667554 332221 344555566654 456778888877655
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
+.+.+.+++++|...||+ |.=++.+.-+++++.++.. |.+. -+-.|. +...++.+...---
T Consensus 85 ~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~-----gv~V----EaElG~----vgg~e~~~~~~~~~ 151 (284)
T PRK09195 85 EKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRF-----DVSV----EAELGR----LGGQEDDLQVDEAD 151 (284)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEEec----ccCcccCccccccc
Confidence 567899999999988886 8888888889999988632 2110 000010 00000110000000
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCc-eeec-ccCCchhHHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKA-YLAG-FAMPHDAPLEMKS 296 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~-~~g~-~~~d~~~a~~~~~ 296 (355)
..-.-.+.+.++++--|||.|-+.-+-- =|... ..|.+ .+.+++|.++. +++ ++-| -..+.++.++.++
T Consensus 152 ~~~T~peea~~Fv~~TgvD~LAvaiGt~---HG~y~--~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ai~ 223 (284)
T PRK09195 152 ALYTDPAQAREFVEATGIDSLAVAIGTA---HGMYK--GEPKLDFDRLENIRQWV---NIPLVLHGASGLPTKDIQQTIK 223 (284)
T ss_pred ccCCCHHHHHHHHHHHCcCEEeeccCcc---ccccC--CCCcCCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHH
Confidence 0012235666677555899765532211 12111 11222 12334443332 333 1222 2223477889999
Q ss_pred CCCCEEEecchHH
Q 018508 297 RGYHMVSGAVDVG 309 (355)
Q Consensus 297 ~G~~~vs~~~D~~ 309 (355)
.|+.-+.+++|..
T Consensus 224 ~Gi~KiNi~T~l~ 236 (284)
T PRK09195 224 LGICKVNVATELK 236 (284)
T ss_pred cCCeEEEeCcHHH
Confidence 9999999999974
No 179
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=86.80 E-value=32 Score=33.48 Aligned_cols=218 Identities=15% Similarity=0.163 Sum_probs=117.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHH-HHHhCCCCeEEcCCCC-
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLH-ALAATGTPAILRLPES- 145 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~-a~~~~g~~~iVRV~~~- 145 (355)
.+-+.-+++...+|.|. ..+.+. ++.+...+.. |||.+-.+. ...+.+..++. .++....|+.|=....
T Consensus 8 ~~l~~A~~~~yaV~Afn-~~n~e~~~avi~aAe~~~~P-vii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 8 ELLKKANQENYGVGAFS-VANMEMVMGAIKAAEELNSP-IILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHHHHHHCCceEEEEE-eCCHHHHHHHHHHHHHhCCC-EEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34444456777888874 444443 3455566666 444543331 23344444444 3456677888777655
Q ss_pred CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCce-EEEEEE
Q 018508 146 CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEEL-LIMCQV 219 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i-~vi~mI 219 (355)
+...+.++++.|+..||+ |.=+..+..+++++.|+.. |... .... .++...+... .+....
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~-----gv~v----eaE~----ghlG~~d~~~~~~g~s~ 152 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQY-----GATV----EAEI----GRVGGSEDGSEDIEMLL 152 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-----CCeE----EEEe----eeECCccCCccccccee
Confidence 456789999999999997 5555666677888877632 1100 0000 1111111111 122233
Q ss_pred ccHHHHHHHHHHhccCCccEEEE--ChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce--eecccCCchhHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQM--GPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEM 294 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~i--Gp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~ 294 (355)
-|++- +.+.++-.|+|.|-+ |+. -|.. +..|.+ .+.++++.+.. .++. .|+-..+.+..+.+
T Consensus 153 t~~ee---a~~f~~~tg~DyLAvaiG~~-----hg~~--~~~~~l~~~~L~~i~~~~---~iPlV~hG~SGI~~e~~~~~ 219 (281)
T PRK06806 153 TSTTE---AKRFAEETDVDALAVAIGNA-----HGMY--NGDPNLRFDRLQEINDVV---HIPLVLHGGSGISPEDFKKC 219 (281)
T ss_pred CCHHH---HHHHHHhhCCCEEEEccCCC-----CCCC--CCCCccCHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHH
Confidence 34433 333333248999988 664 1111 111111 23334433332 3442 33223356889999
Q ss_pred HHCCCCEEEecchHHHHHHHHHHHHHHHH
Q 018508 295 KSRGYHMVSGAVDVGLFRSAAVEDVARFK 323 (355)
Q Consensus 295 ~~~G~~~vs~~~D~~ll~~~~~~~~~~~r 323 (355)
++.|...+.+.+++.. ++.+.+..+.
T Consensus 220 i~~G~~kinv~T~i~~---a~~~a~~~~~ 245 (281)
T PRK06806 220 IQHGIRKINVATATFN---SVITAVNNLV 245 (281)
T ss_pred HHcCCcEEEEhHHHHH---HHHHHHHHHH
Confidence 9999999999998754 4555454444
No 180
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=86.76 E-value=33 Score=33.55 Aligned_cols=212 Identities=16% Similarity=0.183 Sum_probs=113.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~ 145 (355)
+.+-++.+.++..++.|. ..+.+ .++.+...+...|+ .+-.+. ...+.+..+++. ++....|+.|=....
T Consensus 7 k~iL~~A~~~~yaV~AfN-v~n~e~~~avi~AAee~~sPvIl-q~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~ 84 (284)
T PRK12857 7 AELLKKAEKGGYAVGAFN-CNNMEIVQAIVAAAEAEKSPVII-QASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG 84 (284)
T ss_pred HHHHHHHHHcCCeEEEEE-eCCHHHHHHHHHHHHHhCCCEEE-EechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 334444556777788774 33444 34555566767544 443321 344555555554 456778888877665
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
+.+.+.+++++|...||+ |.=++.+..+++++.++.. |.+- -+-.|. +....+.+...-.-
T Consensus 85 ~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~-----gvsV----EaElG~----vgg~e~~~~~~~~~ 151 (284)
T PRK12857 85 TDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAV-----GVSV----EAELGK----IGGTEDDITVDERE 151 (284)
T ss_pred CCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEeee----cCCccCCCCcccch
Confidence 457899999999988886 8888888899999988631 2110 000110 00001110000000
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLEMKS 296 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~~~~ 296 (355)
..-.-.+.+.++++--|||.|-+.-+-. =|... ..|.+ .+.++++.++. +++. + |+-..+.++.++.++
T Consensus 152 ~~~T~pe~a~~Fv~~TgvD~LAvaiGt~---HG~y~--~~p~Ld~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~ 223 (284)
T PRK12857 152 AAMTDPEEARRFVEETGVDALAIAIGTA---HGPYK--GEPKLDFDRLAKIKELV---NIPIVLHGSSGVPDEAIRKAIS 223 (284)
T ss_pred hhcCCHHHHHHHHHHHCCCEEeeccCcc---ccccC--CCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHH
Confidence 0011235666676555899765533211 11110 11222 22334443332 3331 1 222223477889999
Q ss_pred CCCCEEEecchH
Q 018508 297 RGYHMVSGAVDV 308 (355)
Q Consensus 297 ~G~~~vs~~~D~ 308 (355)
.|+.-+-+++|.
T Consensus 224 ~Gi~KiNi~T~~ 235 (284)
T PRK12857 224 LGVRKVNIDTNI 235 (284)
T ss_pred cCCeEEEeCcHH
Confidence 999999999996
No 181
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.73 E-value=5.7 Score=38.94 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=80.1
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEc
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG---------YDFVVVDMEHGPGGISDALACLHALAA-TGTPAILR 141 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVR 141 (355)
+.+.+++.+-+ .+..+.=..|.-+.+++ +..+| .|.|+|.=+|-..- ....+.+..++. .+....|=
T Consensus 122 ~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~-g~i~~av~~~r~~~~~~~~I~ 200 (288)
T PRK07428 122 RQYVEKIADLPTQLVDTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAA-GGIGEAITRIRQRIPYPLTIE 200 (288)
T ss_pred HHHHHHhcCCCeEEEecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHh-CCHHHHHHHHHHhCCCCCEEE
Confidence 45555552211 22333334555565554 34444 37888887784210 012233333332 23223333
Q ss_pred CCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE--E
Q 018508 142 LPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ--V 219 (355)
Q Consensus 142 V~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m--I 219 (355)
|--.+..++.+++++|+|.||+=+. ++++++++++.++.- +.++.+.+. |
T Consensus 201 VEv~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~---------------------------~~~i~leAsGGI 252 (288)
T PRK07428 201 VETETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQ---------------------------NPRVKIEASGNI 252 (288)
T ss_pred EECCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhc---------------------------CCCeEEEEECCC
Confidence 4444577899999999999999864 789999999987531 112222222 3
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChh
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
-.+|+.++++. |||+|.+|..
T Consensus 253 ----t~~ni~~ya~t-GvD~Isvgsl 273 (288)
T PRK07428 253 ----TLETIRAVAET-GVDYISSSAP 273 (288)
T ss_pred ----CHHHHHHHHHc-CCCEEEEchh
Confidence 15788888865 8999999873
No 182
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=86.63 E-value=38 Score=34.19 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=104.7
Q ss_pred CcEEEEEEe-cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH----------hCCCCe--EEcCCCCCHHHH
Q 018508 84 ETLYGLFLL-SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA----------ATGTPA--ILRLPESCPTWA 150 (355)
Q Consensus 84 ~~~~gl~v~-~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~----------~~g~~~--iVRV~~~~~~~i 150 (355)
-|++..-+. ...++++..++..|.=.| |-.+. ..++-.+.++.+. ..+..+ -|-+.+.+.+.+
T Consensus 38 iPivsa~MDtVte~~mAiama~~Gglgv-ih~~~---~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~ 113 (352)
T PF00478_consen 38 IPIVSAPMDTVTESEMAIAMARLGGLGV-IHRNM---SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERA 113 (352)
T ss_dssp SSEEE-SSTTTSSHHHHHHHHHTTSEEE-EESSS---CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHH
T ss_pred CceEecCccccchHHHHHHHHHhcCCce-ecCCC---CHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHH
Confidence 355543332 356777877777765444 44443 3344334443332 122233 344444445678
Q ss_pred HHHHhcCCCeEee--cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 151 KKALDLGPQGVMF--PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 151 ~~aLdaGa~GImv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
..++++|+|-|++ .+.++..++..+ +.+|.. | .+-..+.-.|-|.++..++
T Consensus 114 ~~L~~agvD~ivID~a~g~s~~~~~~i-k~ik~~----------------~----------~~~~viaGNV~T~e~a~~L 166 (352)
T PF00478_consen 114 EALVEAGVDVIVIDSAHGHSEHVIDMI-KKIKKK----------------F----------PDVPVIAGNVVTYEGAKDL 166 (352)
T ss_dssp HHHHHTT-SEEEEE-SSTTSHHHHHHH-HHHHHH----------------S----------TTSEEEEEEE-SHHHHHHH
T ss_pred HHHHHcCCCEEEccccCccHHHHHHHH-HHHHHh----------------C----------CCceEEecccCCHHHHHHH
Confidence 8889999998876 788887766543 343310 0 1234567789999999997
Q ss_pred HHHhccCCccEEEEChhh--HH--h-hcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee-ecccCCchhHHHHHHCCCCEE
Q 018508 229 EDIAAVDGVDCVQMGPLD--LS--A-SMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL-AGFAMPHDAPLEMKSRGYHMV 302 (355)
Q Consensus 229 eeIaavpgVD~l~iGp~D--Ls--~-slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~-g~~~~d~~~a~~~~~~G~~~v 302 (355)
-+ -|+|+|-+|-+= -+ + -+|+ .-|. ..++.++.+++++.+++++ +|=....-++-+.+..|.+++
T Consensus 167 ~~----aGad~vkVGiGpGsiCtTr~v~Gv----G~PQ-~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~V 237 (352)
T PF00478_consen 167 ID----AGADAVKVGIGPGSICTTREVTGV----GVPQ-LTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAV 237 (352)
T ss_dssp HH----TT-SEEEESSSSSTTBHHHHHHSB----SCTH-HHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEE
T ss_pred HH----cCCCEEEEeccCCccccccccccc----CCcH-HHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccce
Confidence 65 279999987541 11 1 1232 1233 4567778888888887643 222233455566789999999
Q ss_pred Eecc
Q 018508 303 SGAV 306 (355)
Q Consensus 303 s~~~ 306 (355)
.+|+
T Consensus 238 MlG~ 241 (352)
T PF00478_consen 238 MLGS 241 (352)
T ss_dssp EEST
T ss_pred eech
Confidence 9985
No 183
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.45 E-value=15 Score=38.57 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=60.1
Q ss_pred ceEEEE-EEccHHHHHHHHHHhccCCccEEEE--ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce-eecccCC
Q 018508 212 ELLIMC-QVESEEGVKRAEDIAAVDGVDCVQM--GPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMP 287 (355)
Q Consensus 212 ~i~vi~-mIET~~av~nieeIaavpgVD~l~i--Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d 287 (355)
++.+++ .|-|.++..++.+ -|+|+|-+ ||+=.+.--++.+- .-|. ..++.++.++|++.++++ +.|=...
T Consensus 268 ~~~v~agnv~t~~~a~~l~~----aGad~v~vgig~gsictt~~~~~~-~~p~-~~av~~~~~~~~~~~~~via~ggi~~ 341 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVE----AGADIVKVGVGPGAMCTTRMMTGV-GRPQ-FSAVLECAAAARELGAHVWADGGVRH 341 (479)
T ss_pred CCeEEeeccCCHHHHHHHHH----cCCCEEEECccCCcccccccccCC-chhH-HHHHHHHHHHHHhcCCcEEecCCCCC
Confidence 366777 9999999999887 27898775 45444433333321 1243 466777888888777764 3333345
Q ss_pred chhHHHHHHCCCCEEEecc
Q 018508 288 HDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 288 ~~~a~~~~~~G~~~vs~~~ 306 (355)
+.++.+.+.+|.+.+.+|+
T Consensus 342 ~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 342 PRDVALALAAGASNVMIGS 360 (479)
T ss_pred HHHHHHHHHcCCCeeeccH
Confidence 6777788899999998885
No 184
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=86.29 E-value=37 Score=33.67 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHH-HhCC-CCeEEcCCCC
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHAL-AATG-TPAILRLPES 145 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~-~~~g-~~~iVRV~~~ 145 (355)
.+-+.-+++...+|.|. ..+.+. ++.+-..+...| |-+-.+. ...+.+..+++.+ +... .|+.+=....
T Consensus 7 ~lL~~A~~~~yaV~AfN-~~n~e~~~avi~AAe~~~sPvI-lq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg 84 (307)
T PRK05835 7 EILLKAHKEGYGVGAFN-FVNFEMLNAIFEAGNEENSPLF-IQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHG 84 (307)
T ss_pred HHHHHHHHCCceEEEEE-ECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 33344455677788774 444443 344555666744 4443332 2345555666544 4454 7777777655
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCC
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~ 181 (355)
+.+.+.+++++|...||+ |.=++.+.-+++++.++.
T Consensus 85 ~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~ 126 (307)
T PRK05835 85 TTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHN 126 (307)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999998886 777888888999998873
No 185
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.16 E-value=35 Score=33.33 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=114.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~ 145 (355)
+.+-+.-++++..++.|. ..+.+. ++.+-..+...|+ ..-.+. ...+.+..+++. ++....|+.|=....
T Consensus 7 ~~~l~~A~~~~yaV~AfN-~~n~e~~~avi~AAee~~sPvIi-q~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~ 84 (284)
T PRK12737 7 KNMLKKAQAEGYAVPAFN-IHNLETLQVVVETAAELRSPVIL-AGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH 84 (284)
T ss_pred HHHHHHHHHcCceEEEEE-eCCHHHHHHHHHHHHHhCCCEEE-EcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344455566777888874 445443 3455567777555 332221 234445555554 456778888877655
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
+...+.+++++|...||+ |.=++.+..+++++.++.. |.+. -+-.|. +...++.+....--
T Consensus 85 ~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~-----gvsV----EaElG~----igg~e~~~~~~~~~ 151 (284)
T PRK12737 85 EDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRY-----DASV----EAELGR----LGGQEDDLVVDEKD 151 (284)
T ss_pred CCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEEee----ccCccCCccccccc
Confidence 457899999999988886 8888888899999998742 1110 000010 00000100000000
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLEMKS 296 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~~~~ 296 (355)
..-.-.+.+.+++.--|||.|-+.-+-. =|... ..|.+ .+.+++|.+.. +++. + |+-..+.++.++.++
T Consensus 152 ~~~T~peeA~~Fv~~TgvD~LAvaiGt~---HG~y~--~~p~Ld~~~L~~I~~~~---~iPLVlHGgSG~~~e~~~kai~ 223 (284)
T PRK12737 152 AMYTNPDAAAEFVERTGIDSLAVAIGTA---HGLYK--GEPKLDFERLAEIREKV---SIPLVLHGASGVPDEDVKKAIS 223 (284)
T ss_pred ccCCCHHHHHHHHHHhCCCEEeeccCcc---ccccC--CCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHH
Confidence 0011225666666556899765532211 11111 11222 12334443332 3331 2 222223477889999
Q ss_pred CCCCEEEecchHH
Q 018508 297 RGYHMVSGAVDVG 309 (355)
Q Consensus 297 ~G~~~vs~~~D~~ 309 (355)
.|+.-+.+++|..
T Consensus 224 ~Gi~KiNi~T~l~ 236 (284)
T PRK12737 224 LGICKVNVATELK 236 (284)
T ss_pred CCCeEEEeCcHHH
Confidence 9999999999953
No 186
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=86.01 E-value=29 Score=33.50 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred HHHHHHHH-HHHHhCCCCeEEcCCCCCHHHH----HHHHhcC-CCeEee----cCCC--------CHHHHHHHHHHcCCC
Q 018508 121 ISDALACL-HALAATGTPAILRLPESCPTWA----KKALDLG-PQGVMF----PMID--------SPEAAKEAVSYCRFP 182 (355)
Q Consensus 121 ~~~a~~~i-~a~~~~g~~~iVRV~~~~~~~i----~~aLdaG-a~GImv----P~Ve--------saeea~~vv~a~~~p 182 (355)
.+...+.+ ......+.+++|=|.+.++..+ +++-++| +++|-+ |+.. +++.+.+++++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh
Confidence 44444433 3333446778888887776643 4556778 999854 4443 366777777777632
Q ss_pred CCCCCCCcccccccccCCCCccccccCCCceEEEEEEc-cHHHHHHHHHHhccCCccEEEE-----Chh-hHHh------
Q 018508 183 PSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE-SEEGVKRAEDIAAVDGVDCVQM-----GPL-DLSA------ 249 (355)
Q Consensus 183 P~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE-T~~av~nieeIaavpgVD~l~i-----Gp~-DLs~------ 249 (355)
- .+.|++-|= +.+-+..+-+.+.--|+|+|.+ |.. |+..
T Consensus 156 ~----------------------------~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~ 207 (301)
T PRK07259 156 V----------------------------KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILA 207 (301)
T ss_pred c----------------------------CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeec
Confidence 0 122333221 1111111222222247888764 321 2211
Q ss_pred -hcC-CCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 250 -SMG-YLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 250 -slG-~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
..| +.+....|..++.+.++.+.. ++++ +|++ .+++++.+++..|.+.+.++.-.
T Consensus 208 ~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~GGI-~~~~da~~~l~aGAd~V~igr~l 266 (301)
T PRK07259 208 NVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGMGGI-SSAEDAIEFIMAGASAVQVGTAN 266 (301)
T ss_pred CCcCccCCcCcccccHHHHHHHHHhC---CCCEEEECCC-CCHHHHHHHHHcCCCceeEcHHH
Confidence 111 222222343444454443322 4443 3333 46788888889999999887654
No 187
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=86.01 E-value=4 Score=42.72 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=57.1
Q ss_pred cCCcEEEEEEec--CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCCeEEcCCCCCHHHHHHHHhcC
Q 018508 82 SNETLYGLFLLS--FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT--GTPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 82 ~G~~~~gl~v~~--~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~~iVRV~~~~~~~i~~aLdaG 157 (355)
.|+..++-.+.. ..++.++.+...|+|.|+||.-|+- . ....++++.++.. +.++++ =|......++.+.++|
T Consensus 211 ~grl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~-~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G 287 (475)
T TIGR01303 211 AGRLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGH-Q-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAG 287 (475)
T ss_pred ccCceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCC-c-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhC
Confidence 344455656554 3467889999999999999999952 2 5666777776543 567776 2344677889999999
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+++|-|
T Consensus 288 ~d~i~v 293 (475)
T TIGR01303 288 ANIIKV 293 (475)
T ss_pred CCEEEE
Confidence 998864
No 188
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.96 E-value=5.8 Score=40.17 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=47.0
Q ss_pred CHHHHHHhhhcCCcEEEE-----eCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 95 SPTLAEISGLAGYDFVVV-----DMEHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vil-----DlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
..+.++.+..+|+|+|++ |-+|+. .+.....+.++. .+.++++ =+-.+....++++++|+|+||+=
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~---~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE---LDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH---CCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 457888899999999999 556653 245555555443 4677776 12335677888999999999873
No 189
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=85.65 E-value=36 Score=33.60 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC-------------CCHHHHHHHHHHHHh-C--CCCeEEcCC
Q 018508 84 ETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP-------------GGISDALACLHALAA-T--GTPAILRLP 143 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~-------------~~~~~a~~~i~a~~~-~--g~~~iVRV~ 143 (355)
+..+.+-+.+++|+.+ +.+...|+|.|=|.+-|-. .+.+.+.++++++.. . +.++.||+.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 3455666668888643 3455689999888887731 233445566766653 2 378888864
Q ss_pred CC--C---H-HHHHHHHhcCCCeEee
Q 018508 144 ES--C---P-TWAKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~~--~---~-~~i~~aLdaGa~GImv 163 (355)
.. + . ..++.+.++|++.|.|
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVV 167 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 32 1 1 1245566789999877
No 190
>PRK08227 autoinducer 2 aldolase; Validated
Probab=85.55 E-value=37 Score=32.94 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHhhhcCCcEEEEeCCCCCC-CH---HHHHHHHHHHHhCCCCeEEcCCCC-----CHHH----HHHHHhcCCCeEeecC
Q 018508 99 AEISGLAGYDFVVVDMEHGPG-GI---SDALACLHALAATGTPAILRLPES-----CPTW----AKKALDLGPQGVMFPM 165 (355)
Q Consensus 99 ~e~aa~~G~D~vilDlEh~~~-~~---~~a~~~i~a~~~~g~~~iVRV~~~-----~~~~----i~~aLdaGa~GImvP~ 165 (355)
+|.+...|+|.|-+=+--+.. +. +++.+....++..|.++++-.+.. ++.. .+-+.+.|||-|=+|.
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC
Confidence 456666777776655544421 11 223334556677888877633221 1222 3557789999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 166 IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 166 Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
.. +..++++++|.-| .=..| +....+.+.++.+++... -|.-|+.+|.|
T Consensus 180 ~~--~~f~~vv~a~~vP-VviaG---------------------------G~k~~~~~~L~~v~~ai~-aGa~Gv~~GRN 228 (264)
T PRK08227 180 VE--EGFERITAGCPVP-IVIAG---------------------------GKKLPERDALEMCYQAID-EGASGVDMGRN 228 (264)
T ss_pred CH--HHHHHHHHcCCCc-EEEeC---------------------------CCCCCHHHHHHHHHHHHH-cCCceeeechh
Confidence 75 7888999877532 10000 011245678888888776 48999999999
No 191
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=85.54 E-value=20 Score=34.01 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=71.2
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCC-HHHH---HHHHHHHHhCCCCeEEcC-------CCCCHHH----HHHHHhcCCCeEe
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGG-ISDA---LACLHALAATGTPAILRL-------PESCPTW----AKKALDLGPQGVM 162 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~-~~~a---~~~i~a~~~~g~~~iVRV-------~~~~~~~----i~~aLdaGa~GIm 162 (355)
.++.+...|+|.|-+-.-.+... .+.. ..+...++..|.+.+|-+ +..+... .+.+.+.|+|.|-
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyik 174 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVK 174 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEe
Confidence 37788889998766655444322 2222 223334455788877732 2222222 2445678999999
Q ss_pred ecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--cc-HHHHHHHHHHhccCCccE
Q 018508 163 FPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ES-EEGVKRAEDIAAVDGVDC 239 (355)
Q Consensus 163 vP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET-~~av~nieeIaavpgVD~ 239 (355)
++...+.+.++++++.++-| +..+--| +| .++++|++++.+. |.++
T Consensus 175 t~~~~~~~~l~~~~~~~~iP------------------------------Vva~GGi~~~~~~~~~~~i~~~~~a-Ga~G 223 (258)
T TIGR01949 175 TPYTGDIDSFRDVVKGCPAP------------------------------VVVAGGPKTNSDREFLQMIKDAMEA-GAAG 223 (258)
T ss_pred ccCCCCHHHHHHHHHhCCCc------------------------------EEEecCCCCCCHHHHHHHHHHHHHc-CCcE
Confidence 98776677777777654321 2222223 12 4568899998874 8999
Q ss_pred EEEChh
Q 018508 240 VQMGPL 245 (355)
Q Consensus 240 l~iGp~ 245 (355)
+.+|.+
T Consensus 224 ia~g~~ 229 (258)
T TIGR01949 224 VAVGRN 229 (258)
T ss_pred EehhhH
Confidence 999987
No 192
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=85.43 E-value=44 Score=33.73 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=68.8
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHH-HhCC-CCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP---GGISDALACLHAL-AATG-TPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~-~~~g-~~~iVRV~~ 144 (355)
+.+-+.-++++..+|.| +..+.+.+ +.+...+.. |||.+-.+. ...+.+..+++++ +... .++.|=...
T Consensus 7 k~lL~~A~~~~yAVgAf-N~~n~e~~~avi~AAee~~sP-vIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 84 (347)
T PRK09196 7 RQLLDHAAEHGYGVPAF-NVNNLEQVQAIMEAADETDSP-VILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHHHHHHcCceEEEe-eeCCHHHHHHHHHHHHHhCCC-EEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 34444455677888888 45555544 444456666 555553331 3345566666654 3443 677777765
Q ss_pred C-CHHHHHHHHhcCCCeEee------------cCCCCHHHHHHHHHHcCC
Q 018508 145 S-CPTWAKKALDLGPQGVMF------------PMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 145 ~-~~~~i~~aLdaGa~GImv------------P~Vesaeea~~vv~a~~~ 181 (355)
. +...+.+++++|...||+ |+=++.+..++++++++.
T Consensus 85 g~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~ 134 (347)
T PRK09196 85 GNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHA 134 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 5 456799999999998887 666677788888888763
No 193
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=85.34 E-value=30 Score=31.77 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=50.4
Q ss_pred ecCCHH-HHHHhhhcCCcEEEE-eCCCC----CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 92 LSFSPT-LAEISGLAGYDFVVV-DMEHG----PGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 92 ~~~sp~-~~e~aa~~G~D~vil-DlEh~----~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
...+|. .++.+...|+|.+.+ |+.-. +.+.+.+.++.. ..+.+++|==.-.+.+.++++++.|++.|++..
T Consensus 27 ~~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~---~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 27 YSDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK---AVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred ECCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 344554 566777889998655 66433 223333333332 234555551111246788999999999998765
Q ss_pred C--CCHHHHHHHHHHc
Q 018508 166 I--DSPEAAKEAVSYC 179 (355)
Q Consensus 166 V--esaeea~~vv~a~ 179 (355)
. ++++.++++.+.+
T Consensus 104 ~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 104 AAVKNPELVKELLKEY 119 (234)
T ss_pred hHHhChHHHHHHHHHc
Confidence 3 5566666666643
No 194
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=85.13 E-value=3 Score=41.08 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=77.7
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHh--CCCCeEE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG---------YDFVVVDMEHGPGGISDALACLHALAA--TGTPAIL 140 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~--~g~~~iV 140 (355)
+++.+++..-. .++++.=..|.-+.+++ +..+| .|.|+|-=+|-..- ......++.++. ......|
T Consensus 135 ~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~iLikdNHi~~~-G~i~~av~~~r~~~~~~kIeV 213 (296)
T PRK09016 135 RRYVELLAGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIAS-GSIRQAVEKAFWLHPDVPVEV 213 (296)
T ss_pred HHHHHHhcCCCeEEEecCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHh-CcHHHHHHHHHHhCCCCCEEE
Confidence 44555552211 23333334455555554 33333 36666666664210 012233333322 2233444
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
=+. +..++..++++|++.||+-+. ++++++++++.++. ++ .||
T Consensus 214 Ev~--sleea~ea~~~gaDiI~LDn~-s~e~~~~av~~~~~------------------------------~~----~ie 256 (296)
T PRK09016 214 EVE--NLDELDQALKAGADIIMLDNF-TTEQMREAVKRTNG------------------------------RA----LLE 256 (296)
T ss_pred EeC--CHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhhcC------------------------------Ce----EEE
Confidence 443 467889999999999999997 48999999986531 11 255
Q ss_pred cHHH--HHHHHHHhccCCccEEEECh
Q 018508 221 SEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 221 T~~a--v~nieeIaavpgVD~l~iGp 244 (355)
-..| ++|+.++++. |||+|++|.
T Consensus 257 aSGGI~~~ni~~yA~t-GVD~Is~ga 281 (296)
T PRK09016 257 VSGNVTLETLREFAET-GVDFISVGA 281 (296)
T ss_pred EECCCCHHHHHHHHhc-CCCEEEeCc
Confidence 5554 4799999875 899999997
No 195
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=85.09 E-value=40 Score=33.02 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=113.6
Q ss_pred HHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC-C
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES-C 146 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~-~ 146 (355)
+-++-+++...++.| +..+.+. ++.+...+...| |..-.+. ...+.+..++.. ++..+.|+.|=.... +
T Consensus 9 iL~~A~~~~yAV~Af-N~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 9 LLQDAQANGYAVPAF-NIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred HHHHHHHCCceEEEE-EeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 334445566677776 4445543 355556777744 4443332 344555556554 356778888887665 4
Q ss_pred HHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc
Q 018508 147 PTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES 221 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET 221 (355)
...+.+++++|...||+ |.=++.+..+++++.++.. |.+- -+-.|. +....+.+.....-..
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~-----gv~V----EaElG~----igg~ed~~~~~~~~~~ 153 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQ-----DCSV----EAELGR----LGGVEDDMSVDAESAF 153 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHc-----CCeE----EEEEEe----eCCccCCcccccchhc
Confidence 67899999999988886 8888888899999998742 1110 000000 0000011000000000
Q ss_pred HHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHHHHHCC
Q 018508 222 EEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLEMKSRG 298 (355)
Q Consensus 222 ~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~~~~~G 298 (355)
-.-.+.+.+++.--|||.|-+.-+-- =|.. ...|.+ .+.+++|.++. +++. + |+-..+.++.++.++.|
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~---HG~Y--~~~p~Ldfd~l~~I~~~~---~vPLVLHGgSG~~~e~~~kai~~G 225 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTA---HGLY--SKTPKIDFQRLAEIREVV---DVPLVLHGASDVPDEFVRRTIELG 225 (286)
T ss_pred CCCHHHHHHHHHHhCCCEEEeccCcc---cCCC--CCCCcCCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHcC
Confidence 11245566666544899765422211 1211 112333 23344443333 3331 2 22222347788999999
Q ss_pred CCEEEecchHH
Q 018508 299 YHMVSGAVDVG 309 (355)
Q Consensus 299 ~~~vs~~~D~~ 309 (355)
..-+-+++|..
T Consensus 226 I~KiNi~T~l~ 236 (286)
T PRK12738 226 VTKVNVATELK 236 (286)
T ss_pred CeEEEeCcHHH
Confidence 99999999963
No 196
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=85.08 E-value=27 Score=36.46 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-C-CCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-T-GTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~-g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
.+.++.+...|.|.+++|..|+-. ....+.+..++. . +.++++ =+-.+....+.+.++|+++|.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~--~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS--EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc--hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEE
Confidence 467888999999999999988742 334444544433 2 456566 2334577899999999999976
No 197
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=84.95 E-value=24 Score=30.34 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=58.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
+.+++.|..... +-......+ ....+.+....+|.|++|+.....+-.++ ++.+. ...++++=....+......
T Consensus 15 ~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~---~~~l~-~~~~vi~~s~~~~~~~~~~ 89 (196)
T PRK10360 15 SGFAQLLGLEPD-LQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLEL---LSQLP-KGMATIMLSVHDSPALVEQ 89 (196)
T ss_pred HHHHHHHccCCC-cEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHH---HHHHc-cCCCEEEEECCCCHHHHHH
Confidence 456666653211 111122334 34456666677999999987544332222 22222 2344554445556677888
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+++.|+++++.- --+.+++...++.+.
T Consensus 90 ~~~~ga~~~i~k-p~~~~~l~~~i~~~~ 116 (196)
T PRK10360 90 ALNAGARGFLSK-RCSPDELIAAVHTVA 116 (196)
T ss_pred HHHcCCcEEEEC-CCCHHHHHHHHHHHH
Confidence 999999987544 356777777666654
No 198
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.56 E-value=2.5 Score=41.26 Aligned_cols=132 Identities=20% Similarity=0.197 Sum_probs=79.3
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHHh-hhcC---------CcEEEEeCCCCCCCHHHHHHHHHHHHh-CC--CCeE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEIS-GLAG---------YDFVVVDMEHGPGGISDALACLHALAA-TG--TPAI 139 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~a-a~~G---------~D~vilDlEh~~~~~~~a~~~i~a~~~-~g--~~~i 139 (355)
+.+.++++..+ .++++.=..|.-+.+++. ..+| +|.|+|.=+|-..- ....+.++.++. .+ ....
T Consensus 120 ~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV~~GGG~~HR~gL~d~vlikdNHi~~~-G~i~~ai~~~r~~~~~~~kIe 198 (281)
T PRK06106 120 ASIVAAIAGTKAKVVCTRKTTPGLRALEKYAVRAGGGMNHRFGLDDAVLIKDNHIAIA-GGVREAIRRARAGVGHLVKIE 198 (281)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHh-CcHHHHHHHHHHhCCCCCcEE
Confidence 34555554322 334444445666666543 3344 36777766674210 012233333332 22 2333
Q ss_pred EcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 140 LRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 140 VRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
|=|. +..++..++++|++.||+=+. ++++++++++.++.. .. |
T Consensus 199 VEv~--tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~~~------------------------------~~----l 241 (281)
T PRK06106 199 VEVD--TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVAGR------------------------------AI----T 241 (281)
T ss_pred EEeC--CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhCCC------------------------------ce----E
Confidence 4443 566888999999999999885 789999999976421 00 4
Q ss_pred ccHHH--HHHHHHHhccCCccEEEECh
Q 018508 220 ESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 220 ET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
|-..| ++|+.++++. |||+|++|.
T Consensus 242 eaSGGI~~~ni~~yA~t-GVD~Is~Ga 267 (281)
T PRK06106 242 EASGRITPETAPAIAAS-GVDLISVGW 267 (281)
T ss_pred EEECCCCHHHHHHHHhc-CCCEEEeCh
Confidence 44444 4789999975 899999997
No 199
>PRK08999 hypothetical protein; Provisional
Probab=84.53 E-value=40 Score=32.57 Aligned_cols=157 Identities=22% Similarity=0.172 Sum_probs=90.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCC-HH-HHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHH
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGG-IS-DALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEA 175 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~-~~-~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~v 175 (355)
.++.+...|.++|.+-.-+.... .. .++.+...++.++...+| |+ ...-+++.|++||=++.-+-.. ...
T Consensus 149 ~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~lii--nd----~~~la~~~~~~GvHl~~~d~~~--~~~ 220 (312)
T PRK08999 149 RLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLL--NG----DPELAEDLGADGVHLTSAQLAA--LAA 220 (312)
T ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEE--EC----cHHHHHhcCCCEEEcChhhcCh--Hhh
Confidence 45667789999999988775421 11 223333334556666664 33 2455788999999998643211 000
Q ss_pred HHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCC
Q 018508 176 VSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLW 255 (355)
Q Consensus 176 v~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~ 255 (355)
+. .| ....+++.+.|.+.+.++.+ .|+|.++|||-=-+.+ -+.
T Consensus 221 ----r~--~~-------------------------~~~~ig~S~h~~~~~~~a~~----~~~dyi~~gpvf~t~t--k~~ 263 (312)
T PRK08999 221 ----RP--LP-------------------------AGRWVAASCHDAEELARAQR----LGVDFAVLSPVQPTAS--HPG 263 (312)
T ss_pred ----cc--CC-------------------------CCCEEEEecCCHHHHHHHHh----cCCCEEEECCCcCCCC--CCC
Confidence 11 01 12357788888887766554 3789999999622111 111
Q ss_pred -CCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecch
Q 018508 256 -DPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 256 -~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
.+.. ...++++.+ ...+++ +||+ +++.+..+++.|+.++++.+.
T Consensus 264 ~~~~g---~~~~~~~~~---~~~~Pv~AiGGI--~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 264 AAPLG---WEGFAALIA---GVPLPVYALGGL--GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCCCC---HHHHHHHHH---hCCCCEEEECCC--CHHHHHHHHHhCCCEEEEEEE
Confidence 1111 222333322 233443 4444 678888899999999987653
No 200
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.49 E-value=11 Score=38.75 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCH--HHHHHhhhcCCcEE-EEeCCCCCCCHHHHHHHHHHHHhCCCCe-----EEcCC
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSP--TLAEISGLAGYDFV-VVDMEHGPGGISDALACLHALAATGTPA-----ILRLP 143 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp--~~~e~aa~~G~D~v-ilDlEh~~~~~~~a~~~i~a~~~~g~~~-----iVRV~ 143 (355)
.+|.-.|.|..||-++|+--..++. .++++++..|.|.+ +||. ..|...+...++++...|..+ +-.-|
T Consensus 75 ~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDA---lND~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 75 VPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDA---LNDVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred CCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechh---ccchhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 5677789999999999987655543 47889999999963 4443 445555555666665555432 22223
Q ss_pred CCCHH----HHHHHHhcCCCeEee---cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 144 ESCPT----WAKKALDLGPQGVMF---PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 144 ~~~~~----~i~~aLdaGa~GImv---P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
-+.-. ..+..+++|+|.|.+ .-+-|+..+.++|+.+|.- + .+.|.
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~----------------~------------~~pv~ 203 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE----------------L------------PVPVE 203 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh----------------c------------CCeeE
Confidence 33222 257789999998876 3457888999999998742 0 13344
Q ss_pred EEEccHHHHHHHHHHhcc-CCccEE
Q 018508 217 CQVESEEGVKRAEDIAAV-DGVDCV 240 (355)
Q Consensus 217 ~mIET~~av~nieeIaav-pgVD~l 240 (355)
...-...|+...--+.++ .|+|+|
T Consensus 204 lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 204 LHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred EecccccchHHHHHHHHHHhCcchh
Confidence 444455677777666654 367765
No 201
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.36 E-value=35 Score=32.77 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=79.9
Q ss_pred HHHHHHHHHH-HhCCCCeEEcCCCCCHHH----HHHHHhcCCCeEee----cC--------CCCHHHHHHHHHHcCCCCC
Q 018508 122 SDALACLHAL-AATGTPAILRLPESCPTW----AKKALDLGPQGVMF----PM--------IDSPEAAKEAVSYCRFPPS 184 (355)
Q Consensus 122 ~~a~~~i~a~-~~~g~~~iVRV~~~~~~~----i~~aLdaGa~GImv----P~--------Vesaeea~~vv~a~~~pP~ 184 (355)
+...+.++.. ...+.+++|=|...+... .+++.++|+++|-+ |+ ..+++.+.++++.++..-
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~- 153 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT- 153 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-
Confidence 4444433333 334667777777766544 35566789999866 33 245666777777765310
Q ss_pred CCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHh---ccCCccEEEE-----Chh-hHHh------
Q 018508 185 GVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIA---AVDGVDCVQM-----GPL-DLSA------ 249 (355)
Q Consensus 185 G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIa---avpgVD~l~i-----Gp~-DLs~------ 249 (355)
.+.|++-| ++ .+++..+|+ .--|+|+|.+ |.. |+..
T Consensus 154 ---------------------------~~Pv~vKl-~~-~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~ 204 (296)
T cd04740 154 ---------------------------DVPVIVKL-TP-NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILG 204 (296)
T ss_pred ---------------------------CCCEEEEe-CC-CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeec
Confidence 12333333 11 012233333 2247888765 211 2210
Q ss_pred -h-cCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 250 -S-MGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 250 -s-lG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
. -|+.+...+|..++.+.++.+.. .+++ .|++ .+++++.++++.|.+.+.++.-.
T Consensus 205 ~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~GGI-~~~~da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 205 NVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGVGGI-ASGEDALEFLMAGASAVQVGTAN 263 (296)
T ss_pred CCcceecCcccchHHHHHHHHHHHhc---CCCEEEECCC-CCHHHHHHHHHcCCCEEEEchhh
Confidence 0 12223333444445555444332 4443 3333 36788888899999999887654
No 202
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=84.36 E-value=37 Score=32.75 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.5
Q ss_pred CCchhHHHHHHCCCCEEEecchH
Q 018508 286 MPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 286 ~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
.+++++.+++..|.+.+.++.-.
T Consensus 244 ~s~~da~~~l~~GAd~V~igr~~ 266 (300)
T TIGR01037 244 TSFEDALEFLMAGASAVQVGTAV 266 (300)
T ss_pred CCHHHHHHHHHcCCCceeecHHH
Confidence 35788888889999999888644
No 203
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=84.31 E-value=44 Score=32.78 Aligned_cols=224 Identities=17% Similarity=0.189 Sum_probs=121.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC---CC-HHHHHHHHHHH-HhC--CCCeEEcC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP---GG-ISDALACLHAL-AAT--GTPAILRL 142 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~---~~-~~~a~~~i~a~-~~~--g~~~iVRV 142 (355)
+.+-+..++++..++.| +..+.+.+ +.+...+... ||.+-.+. .. .+.+..+++.+ +.. +.|+.|=.
T Consensus 7 ~~~l~~A~~~~yav~Af-N~~n~e~~~avi~aAe~~~sPv-Ilq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHL 84 (293)
T PRK07315 7 EKFVQAARDNGYAVGGF-NTNNLEWTQAILRAAEAKKAPV-LIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHL 84 (293)
T ss_pred HHHHHHHHHCCceEEEE-EECCHHHHHHHHHHHHHHCCCE-EEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEEC
Confidence 34445556677788876 45555544 4455566774 44543331 12 45555555543 445 56888888
Q ss_pred CCCCHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE
Q 018508 143 PESCPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC 217 (355)
Q Consensus 143 ~~~~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~ 217 (355)
...+...+.++++.|...||+ |.=++.+..+++++.++-. |... ..-.|.. ....+. .+..
T Consensus 85 DH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~-----gv~v----E~ElG~i----~g~ed~-~~g~ 150 (293)
T PRK07315 85 DHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAK-----GISV----EAEVGTI----GGEEDG-IIGK 150 (293)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEecCcc----cCcCcc-ccCc
Confidence 777666899999999999996 7667777788888887631 1110 1111110 000010 0110
Q ss_pred E-EccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHH-HHHHHHHHHHHHHhCCCce--eecccCCchhHHH
Q 018508 218 Q-VESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRK-VREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLE 293 (355)
Q Consensus 218 m-IET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~-v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~ 293 (355)
- .-+| +.+.++.. -|+|.|-+|-+=. =|...+. .|. =.+.++++.++.. +++. .|+-..+.+..+.
T Consensus 151 s~~t~p---eea~~f~~-tgvD~LAv~iG~v---HG~y~t~-~k~l~~e~L~~i~~~~~--~iPlVlhGGSGi~~e~~~~ 220 (293)
T PRK07315 151 GELAPI---EDAKAMVE-TGIDFLAAGIGNI---HGPYPEN-WEGLDLDHLEKLTEAVP--GFPIVLHGGSGIPDDQIQE 220 (293)
T ss_pred cCCCCH---HHHHHHHH-cCCCEEeeccccc---cccCCCC-CCcCCHHHHHHHHHhcc--CCCEEEECCCCCCHHHHHH
Confidence 0 1233 33344443 4899888873211 1111110 011 1223344333331 2432 3332335688999
Q ss_pred HHHCCCCEEEecchHHHHHHHHHHHHHHHHHhc
Q 018508 294 MKSRGYHMVSGAVDVGLFRSAAVEDVARFKMNL 326 (355)
Q Consensus 294 ~~~~G~~~vs~~~D~~ll~~~~~~~~~~~r~~~ 326 (355)
.++.|.+.+.+.++... ++.+.+..+....
T Consensus 221 ~i~~Gi~KiNv~T~i~~---~~~~~~~~~~~~~ 250 (293)
T PRK07315 221 AIKLGVAKVNVNTECQI---AFANATRKFARDY 250 (293)
T ss_pred HHHcCCCEEEEccHHHH---HHHHHHHHHHHhc
Confidence 99999999999999864 6666666665543
No 204
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.27 E-value=37 Score=31.94 Aligned_cols=85 Identities=9% Similarity=-0.044 Sum_probs=51.6
Q ss_pred CCH-HHHHHhhh-cCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC--C
Q 018508 94 FSP-TLAEISGL-AGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI--D 167 (355)
Q Consensus 94 ~sp-~~~e~aa~-~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V--e 167 (355)
.+| +.++.... .|+|. .++||.-+..+.+.-.+++..+ +..+.++.|==.=.+.+.+++++++|++-|++-.. +
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 576 46666666 68987 7889976633332223334333 22334444321112467899999999999988654 5
Q ss_pred CHHHHHHHHHH
Q 018508 168 SPEAAKEAVSY 178 (355)
Q Consensus 168 saeea~~vv~a 178 (355)
+++-++++.+.
T Consensus 111 ~~~~l~~~~~~ 121 (234)
T PRK13587 111 DTDWLKEMAHT 121 (234)
T ss_pred CHHHHHHHHHH
Confidence 66666666553
No 205
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.16 E-value=9.8 Score=37.29 Aligned_cols=74 Identities=7% Similarity=-0.053 Sum_probs=56.8
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
-+-+-..+.+.++.+...|+|+|.+| ..+.+++++.+..++. .+..+++=..+.+...+......|+|+|.+=.
T Consensus 198 ~I~VEv~tleea~eA~~~GaD~I~LD----n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 198 TIEVETETLEQVQEALEYGADIIMLD----NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEch
Confidence 35566789999999999999999999 5667888777765543 33445555667788889999999999988643
No 206
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=84.14 E-value=18 Score=33.51 Aligned_cols=73 Identities=15% Similarity=0.037 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC-Cc----hhHHHHH
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM-PH----DAPLEMK 295 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~-d~----~~a~~~~ 295 (355)
+.+-+..+-.++.--|.|.|.+.. +. .. +.++++++.+. ......|++.. ++ +.++.++
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~---------~~---~~---~~~~~i~~~~~-~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKY---------TG---DA---ESFKEVVEGCP-VPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecC---------CC---CH---HHHHHHHhcCC-CCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 344555533444334889888842 11 12 23444443331 11222344322 33 4478889
Q ss_pred HCCCCEEEecchHH
Q 018508 296 SRGYHMVSGAVDVG 309 (355)
Q Consensus 296 ~~G~~~vs~~~D~~ 309 (355)
+.|.+++++|.-+.
T Consensus 205 ~~Ga~gv~vg~~i~ 218 (235)
T cd00958 205 EAGAAGVAVGRNIF 218 (235)
T ss_pred HcCCcEEEechhhh
Confidence 99999999997765
No 207
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=83.91 E-value=44 Score=32.47 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC------------CCHHHHHHHHHHHH-hCCCCeEEcCCCCC
Q 018508 84 ETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP------------GGISDALACLHALA-ATGTPAILRLPESC 146 (355)
Q Consensus 84 ~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~------------~~~~~a~~~i~a~~-~~g~~~iVRV~~~~ 146 (355)
+|+++-.....+++ .++.+...|+|+|=|++-.-. .+.+.+.+++++++ ....+++|++....
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~ 179 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNI 179 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCc
Confidence 45554443332554 334455578999999887531 34566777887775 45689999997543
Q ss_pred H---HHHHHHHhcCCCeEee
Q 018508 147 P---TWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~---~~i~~aLdaGa~GImv 163 (355)
. ..++.+.++|++||.+
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 180 TDIREIARAAKEGGADGVSA 199 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEE
Confidence 2 2356688999999986
No 208
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.88 E-value=14 Score=35.34 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHh--CCCCeEEcCCCCCHHH----HHHHHhcCCCeEee----cCC-------CCHHHHHHHHHHcC
Q 018508 119 GGISDALACLHALAA--TGTPAILRLPESCPTW----AKKALDLGPQGVMF----PMI-------DSPEAAKEAVSYCR 180 (355)
Q Consensus 119 ~~~~~a~~~i~a~~~--~g~~~iVRV~~~~~~~----i~~aLdaGa~GImv----P~V-------esaeea~~vv~a~~ 180 (355)
...+...+.+..... .+.+++|=|...++.. ++.+.+.|+++|-+ |.+ ++++.+.++++.++
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr 158 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVK 158 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHH
Confidence 345555555544333 3567777776666543 45566779998765 433 35677777777776
No 209
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=83.83 E-value=32 Score=31.26 Aligned_cols=85 Identities=9% Similarity=-0.064 Sum_probs=54.0
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHH
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAA 172 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea 172 (355)
.+..+..+.+....+|.|++|+.-...+--++...++.. ....++++=....+...+.+++++|+++.+.-- -+.+++
T Consensus 37 ~~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~-~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp-~~~~~L 114 (225)
T PRK10046 37 GNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA-HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKP-IAYERL 114 (225)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECC-cCHHHH
Confidence 344456677777889999999987654433333333321 223445554455566778899999999987644 456777
Q ss_pred HHHHHHc
Q 018508 173 KEAVSYC 179 (355)
Q Consensus 173 ~~vv~a~ 179 (355)
...++.+
T Consensus 115 ~~~i~~~ 121 (225)
T PRK10046 115 GQTLTRF 121 (225)
T ss_pred HHHHHHH
Confidence 6666543
No 210
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=83.36 E-value=4.2 Score=39.81 Aligned_cols=137 Identities=14% Similarity=0.082 Sum_probs=79.1
Q ss_pred hHHHHHHHc-C--CcEEEEEEecCCHHHHHH-hhhcCC---------cEEEEeCCCCC--CCHHHHHHHHHHHHh--CCC
Q 018508 74 ESLKYRLQS-N--ETLYGLFLLSFSPTLAEI-SGLAGY---------DFVVVDMEHGP--GGISDALACLHALAA--TGT 136 (355)
Q Consensus 74 n~lk~~L~~-G--~~~~gl~v~~~sp~~~e~-aa~~G~---------D~vilDlEh~~--~~~~~a~~~i~a~~~--~g~ 136 (355)
+.+-+++++ + -.+..+.=..|.-+.+++ +..+|- |.++|==+|-. .+.+.....++.++. ...
T Consensus 111 ~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~ 190 (284)
T PRK06096 111 AQMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEK 190 (284)
T ss_pred HHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCC
Confidence 445555643 2 134444444566665654 344442 33333333321 111133334444332 223
Q ss_pred CeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 137 PAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 137 ~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
.+.|=+. +.++++.++++|++.||+=+ -++++++++++.++.. +.++
T Consensus 191 kIeVEv~--tleqa~ea~~agaDiI~LDn-~~~e~l~~av~~~~~~---------------------------~~~~--- 237 (284)
T PRK06096 191 KIVVEAD--TPKEAIAALRAQPDVLQLDK-FSPQQATEIAQIAPSL---------------------------APHC--- 237 (284)
T ss_pred CEEEECC--CHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHhhcc---------------------------CCCe---
Confidence 4555554 56789999999999999965 5899999999987521 0111
Q ss_pred EEEccHHH--HHHHHHHhccCCccEEEEChh
Q 018508 217 CQVESEEG--VKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 217 ~mIET~~a--v~nieeIaavpgVD~l~iGp~ 245 (355)
.||-..| ++|+.++++. |||.++.|.-
T Consensus 238 -~leaSGGI~~~ni~~yA~t-GvD~Is~gal 266 (284)
T PRK06096 238 -TLSLAGGINLNTLKNYADC-GIRLFITSAP 266 (284)
T ss_pred -EEEEECCCCHHHHHHHHhc-CCCEEEECcc
Confidence 2444443 5788999975 8999999873
No 211
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.31 E-value=2.3 Score=41.26 Aligned_cols=136 Identities=21% Similarity=0.170 Sum_probs=76.7
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC-C--------cEEEEeCCCCCCCHHHHHHHHHHHHh-CC--CCeE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG-Y--------DFVVVDMEHGPGGISDALACLHALAA-TG--TPAI 139 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G-~--------D~vilDlEh~~~~~~~a~~~i~a~~~-~g--~~~i 139 (355)
+++.++++.-+ .++++.=..|.-+.+++ +..+| . |.|+|.=+|-..- +...+.++.++. .+ ....
T Consensus 108 ~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~-g~i~~~v~~~k~~~p~~~~I~ 186 (273)
T PRK05848 108 SRYVEALESHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHI-KDLKEFIQHARKNIPFTAKIE 186 (273)
T ss_pred HHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHH-CcHHHHHHHHHHhCCCCceEE
Confidence 45555554311 22333333455555543 33333 3 5666655564211 233444544443 22 3344
Q ss_pred EcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 140 LRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 140 VRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
|=+. +-++...++++|+|.||+=.. ++++++++++.++.. +.++. |
T Consensus 187 VEv~--tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~---------------------------~~~~~----i 232 (273)
T PRK05848 187 IECE--SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNAN---------------------------YPHVL----L 232 (273)
T ss_pred EEeC--CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhcc---------------------------CCCeE----E
Confidence 5443 467889999999999999764 899999999875310 01222 3
Q ss_pred ccHHH--HHHHHHHhccCCccEEEEChh
Q 018508 220 ESEEG--VKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 220 ET~~a--v~nieeIaavpgVD~l~iGp~ 245 (355)
|-..| .+|+.+++.. |||+|++|..
T Consensus 233 eAsGgIt~~ni~~ya~~-GvD~IsvG~l 259 (273)
T PRK05848 233 EASGNITLENINAYAKS-GVDAISSGSL 259 (273)
T ss_pred EEECCCCHHHHHHHHHc-CCCEEEeChh
Confidence 33222 3567777764 8999999973
No 212
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.23 E-value=12 Score=36.33 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHhhhcCCcEEEEeCCCC--------CC-C---------H-H---HHHHHHHHHHh-C--CCCeEEcCCCCC-----
Q 018508 97 TLAEISGLAGYDFVVVDMEHG--------PG-G---------I-S---DALACLHALAA-T--GTPAILRLPESC----- 146 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~--------~~-~---------~-~---~a~~~i~a~~~-~--g~~~iVRV~~~~----- 146 (355)
..++.+..+|||.|=|..-|+ |. + . . -+.+.+.+++. . +.++.||++..+
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 456777889999999998875 11 1 1 1 12345555543 2 457899998542
Q ss_pred --HH----HHHHHHhcCCCeEee
Q 018508 147 --PT----WAKKALDLGPQGVMF 163 (355)
Q Consensus 147 --~~----~i~~aLdaGa~GImv 163 (355)
.. .++.+.+.|++.|-+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~v 247 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHV 247 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe
Confidence 22 245666788887754
No 213
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.15 E-value=38 Score=31.57 Aligned_cols=107 Identities=23% Similarity=0.271 Sum_probs=63.3
Q ss_pred ecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEee-c-CCCC
Q 018508 92 LSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPES-CPTWAKKALDLGPQGVMF-P-MIDS 168 (355)
Q Consensus 92 ~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImv-P-~Ves 168 (355)
..-+++.++.+..+|++|++ +|.--++. +..+...+.+.+ |+. ++..+.++++.|++.|-+ | ..-+
T Consensus 74 TV~~~~~~~~a~~aGA~Fiv-----sP~~~~~v---~~~~~~~~i~~i---PG~~T~~E~~~A~~~Gad~vklFPa~~~G 142 (213)
T PRK06552 74 TVLDAVTARLAILAGAQFIV-----SPSFNRET---AKICNLYQIPYL---PGCMTVTEIVTALEAGSEIVKLFPGSTLG 142 (213)
T ss_pred eCCCHHHHHHHHHcCCCEEE-----CCCCCHHH---HHHHHHcCCCEE---CCcCCHHHHHHHHHcCCCEEEECCcccCC
Confidence 45678888888888999888 55332333 333334555543 333 466788888888887665 3 1223
Q ss_pred HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE--EEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 169 PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC--QVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 169 aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~--mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
++.++.+...+. ++.+++ -|. .+|+.+.++. |++++.+|..
T Consensus 143 ~~~ik~l~~~~p-------------------------------~ip~~atGGI~----~~N~~~~l~a-Ga~~vavgs~ 185 (213)
T PRK06552 143 PSFIKAIKGPLP-------------------------------QVNVMVTGGVN----LDNVKDWFAA-GADAVGIGGE 185 (213)
T ss_pred HHHHHHHhhhCC-------------------------------CCEEEEECCCC----HHHHHHHHHC-CCcEEEEchH
Confidence 454444433211 122222 121 4899999875 7899998865
No 214
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.05 E-value=42 Score=31.66 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=112.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHH------HHhhhcCCcEEEEeCCCC-C-CCH-----------------HHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLA------EISGLAGYDFVVVDMEHG-P-GGI-----------------SDALACL 128 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~------e~aa~~G~D~vilDlEh~-~-~~~-----------------~~a~~~i 128 (355)
..|..+-..++.++-.|+..+.|..- +-+...|.|.|=+-+-.+ | .+- +...+|+
T Consensus 7 ~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emv 86 (268)
T KOG4175|consen 7 ETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMV 86 (268)
T ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHH
Confidence 34444455688999999998877532 334568899888776554 1 111 1112233
Q ss_pred HHHHhCCCC-eEEcC---CC----CCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC
Q 018508 129 HALAATGTP-AILRL---PE----SCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG 200 (355)
Q Consensus 129 ~a~~~~g~~-~iVRV---~~----~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g 200 (355)
..++-.|.. |++=. |. .....|+.+-.+|++|.++|.+- +||+..+...++..
T Consensus 87 k~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlP-pEEa~~~Rne~~k~------------------ 147 (268)
T KOG4175|consen 87 KEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLP-PEEAETLRNEARKH------------------ 147 (268)
T ss_pred HHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCC-hHHHHHHHHHHHhc------------------
Confidence 333333332 22211 11 12345888999999999999984 79998888888742
Q ss_pred CCccccccCCCceEEEEEE---ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCC
Q 018508 201 IDEGYLSNYEEELLIMCQV---ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGG 277 (355)
Q Consensus 201 ~~~~y~~~~n~~i~vi~mI---ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g 277 (355)
.+.++.++ -|-+-++-+-+++. .+|++ ...||..+... .+-+.+..+++..|+.-
T Consensus 148 -----------gislvpLvaPsTtdeRmell~~~ad----sFiYv-----VSrmG~TG~~~--svn~~l~~L~qrvrk~t 205 (268)
T KOG4175|consen 148 -----------GISLVPLVAPSTTDERMELLVEAAD----SFIYV-----VSRMGVTGTRE--SVNEKLQSLLQRVRKAT 205 (268)
T ss_pred -----------CceEEEeeCCCChHHHHHHHHHhhc----ceEEE-----EEeccccccHH--HHHHHHHHHHHHHHHhc
Confidence 12333333 45566666666664 24443 23577766432 35555555555555533
Q ss_pred --Cceeeccc-CCchhHHHHHHCCCCEEEecchHHHH
Q 018508 278 --KAYLAGFA-MPHDAPLEMKSRGYHMVSGAVDVGLF 311 (355)
Q Consensus 278 --~~~~g~~~-~d~~~a~~~~~~G~~~vs~~~D~~ll 311 (355)
.+...++. ..+|.....-+. .+++.+|+-+.-|
T Consensus 206 ~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~l 241 (268)
T KOG4175|consen 206 GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVKL 241 (268)
T ss_pred CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHHH
Confidence 22333443 345666655444 7888999877654
No 215
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.01 E-value=19 Score=35.59 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=50.7
Q ss_pred EEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCCCC--------HHHHHHHHHHHH-hCCCCeEEcCCCCC---HHH
Q 018508 86 LYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGPGG--------ISDALACLHALA-ATGTPAILRLPESC---PTW 149 (355)
Q Consensus 86 ~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~~~--------~~~a~~~i~a~~-~~g~~~iVRV~~~~---~~~ 149 (355)
.+..-++..+++ .++.+...|+|++-|.+-+-+.+ .+.+.+.+++++ ....|++|++...- ...
T Consensus 101 pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~ 180 (325)
T cd04739 101 PVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHM 180 (325)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHH
Confidence 344445555664 44556678999999999753211 133456666664 34689999987542 234
Q ss_pred HHHHHhcCCCeEee
Q 018508 150 AKKALDLGPQGVMF 163 (355)
Q Consensus 150 i~~aLdaGa~GImv 163 (355)
++.+.++|++||.+
T Consensus 181 a~~l~~~Gadgi~~ 194 (325)
T cd04739 181 AKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHcCCCeEEE
Confidence 56678899999987
No 216
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=82.73 E-value=11 Score=34.81 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=50.8
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCC----C-CCCHHHHHHHHHHHH-hCCCCeEEcCCCCCH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEH----G-PGGISDALACLHALA-ATGTPAILRLPESCP 147 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh----~-~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~ 147 (355)
..+.++++.....+ .....+...++.+...|+|+++++--. . ..+. ...+.++.+. ..+.+ ++=..+...
T Consensus 92 ~~~~~~~~~~~i~~--i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~-~~~~~i~~i~~~~~~P-vi~~GGI~~ 167 (236)
T cd04730 92 AEVVERLKAAGIKV--IPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDI-GTFALVPEVRDAVDIP-VIAAGGIAD 167 (236)
T ss_pred HHHHHHHHHcCCEE--EEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCcccc-CHHHHHHHHHHHhCCC-EEEECCCCC
Confidence 44555555432222 233456777888888999999987532 1 1110 1122333332 22444 444666654
Q ss_pred -HHHHHHHhcCCCeEeec
Q 018508 148 -TWAKKALDLGPQGVMFP 164 (355)
Q Consensus 148 -~~i~~aLdaGa~GImvP 164 (355)
..+.+++..|++||++=
T Consensus 168 ~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 168 GRGIAAALALGADGVQMG 185 (236)
T ss_pred HHHHHHHHHcCCcEEEEc
Confidence 78999999999998874
No 217
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=82.66 E-value=12 Score=36.32 Aligned_cols=74 Identities=12% Similarity=-0.060 Sum_probs=54.7
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC-CCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT-GTPAILRLPESCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~-g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V 166 (355)
+-+...+++.+..+...|+|+|.+| +...++....+..++.. ...+++=+.+.+...+...+..|+++|++-.+
T Consensus 186 IgVev~t~eea~~A~~~gaD~I~ld----~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 186 IVVEVDSLEEALAAAEAGADILQLD----KFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred EEEEcCCHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEEChh
Confidence 3455678888888889999999999 34445555555544432 23467777888899999999999999976554
No 218
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.65 E-value=45 Score=31.72 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=57.4
Q ss_pred HHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHHH-hCC-CCeEEcCC
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHALA-ATG-TPAILRLP 143 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~~-~~g-~~~iVRV~ 143 (355)
|+++=++|++++ ..+.-++-.+..+..+|+|.|++- .+|. ..+.+++...++++. ... .++++=.+
T Consensus 4 ~~~~~~~~~~i~--~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 4 LQKYKQEKERFA--TLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred HHHHHhCCCeEE--EecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 555556677654 445678888899999999998863 2332 245666666666654 333 46677776
Q ss_pred CCC---HHH----HHHHHhcCCCeEee
Q 018508 144 ESC---PTW----AKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~~~---~~~----i~~aLdaGa~GImv 163 (355)
... +.. +++++++|++||-+
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEE
Confidence 652 222 57788999999987
No 219
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.23 E-value=59 Score=32.78 Aligned_cols=187 Identities=13% Similarity=0.003 Sum_probs=109.8
Q ss_pred CCcEEEEEEe-cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh---CCCCeEEcCCCCCHHHHHHHHh--c
Q 018508 83 NETLYGLFLL-SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA---TGTPAILRLPESCPTWAKKALD--L 156 (355)
Q Consensus 83 G~~~~gl~v~-~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~---~g~~~iVRV~~~~~~~i~~aLd--a 156 (355)
|-|++..-+. ...-+++..++..|.=.++ |--.+.++..+.++.... ....+-|-+.+.+.+.+..+++ +
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~~i----Hk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~ 121 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILTAV----HKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSP 121 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeEEE----ecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCC
Confidence 4555554443 3567788888888876665 544556666666654431 1223455566656667788888 4
Q ss_pred CCCeEee--cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhcc
Q 018508 157 GPQGVMF--PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAV 234 (355)
Q Consensus 157 Ga~GImv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaav 234 (355)
|++.|++ .+-+|...+ ..++.+|.. ..+...+.-.|-|+++++++.+ +
T Consensus 122 g~D~iviD~AhGhs~~~i-~~ik~ik~~--------------------------~P~~~vIaGNV~T~e~a~~Li~--a- 171 (346)
T PRK05096 122 ALNFICIDVANGYSEHFV-QFVAKAREA--------------------------WPDKTICAGNVVTGEMVEELIL--S- 171 (346)
T ss_pred CCCEEEEECCCCcHHHHH-HHHHHHHHh--------------------------CCCCcEEEecccCHHHHHHHHH--c-
Confidence 8888775 555554443 334444321 0122356778999999998765 2
Q ss_pred CCccEEEEC--hhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee-ecccCCchhHHHHHHCCCCEEEecc
Q 018508 235 DGVDCVQMG--PLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL-AGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 235 pgVD~l~iG--p~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~-g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
|.|+|=+| |+=.+..- ..-...-|. +.++.++..+|++.|++++ +|=...+-+..+.+..|.+++.+|+
T Consensus 172 -GAD~vKVGIGpGSiCtTr-~vtGvG~PQ-ltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGs 243 (346)
T PRK05096 172 -GADIVKVGIGPGSVCTTR-VKTGVGYPQ-LSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGG 243 (346)
T ss_pred -CCCEEEEcccCCccccCc-cccccChhH-HHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeCh
Confidence 78887654 44332210 000112343 4567778888888887642 2222233444556789999999884
No 220
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=82.04 E-value=54 Score=32.13 Aligned_cols=208 Identities=16% Similarity=0.229 Sum_probs=113.3
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC----CCHHHHHHHHHHH-HhCC--CCeEEcCC
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP----GGISDALACLHAL-AATG--TPAILRLP 143 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~----~~~~~a~~~i~a~-~~~g--~~~iVRV~ 143 (355)
.+-+.-+++...++.|. ..+.+. ++.+...+...| |.+-.+. ...+.+..+++.+ +... .|+.+=..
T Consensus 8 ~lL~~A~~~~yAV~AfN-~~n~e~~~avi~AAe~~~sPvI-iq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLD 85 (285)
T PRK07709 8 EMLNKALEGKYAVGQFN-MNNLEWTQAILAAAEEEKSPVI-LGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLD 85 (285)
T ss_pred HHHHHHHHCCceEEEEE-ECCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECC
Confidence 34444556777888884 444443 344555667754 4443321 2445566666654 3333 57777776
Q ss_pred CC-CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEE-E
Q 018508 144 ES-CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLI-M 216 (355)
Q Consensus 144 ~~-~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~v-i 216 (355)
.. +...+.+++++|...||+ |.=++.+.-+++++.++.. |.+- -+-.|. +....+.... .
T Consensus 86 Hg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~-----gv~V----EaElG~----igg~ed~~~~~~ 152 (285)
T PRK07709 86 HGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHAR-----NVSV----EAELGT----VGGQEDDVIAEG 152 (285)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEEec----cCCccCCccccc
Confidence 55 457899999999998886 8888888899999988732 2110 000010 0000000000 0
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHH
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLE 293 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~ 293 (355)
... .-.+.+.+++.--|||.|.+.-+-. =|... ..|.+ .+.+++|.+.. +++. + |+-..+.++.++
T Consensus 153 ~~y---T~peeA~~Fv~~TgvD~LAvaiGt~---HG~Y~--~~p~L~~~~L~~I~~~~---~iPLVLHGgSG~~~e~~~~ 221 (285)
T PRK07709 153 VIY---ADPAECKHLVEATGIDCLAPALGSV---HGPYK--GEPNLGFAEMEQVRDFT---GVPLVLHGGTGIPTADIEK 221 (285)
T ss_pred ccC---CCHHHHHHHHHHhCCCEEEEeeccc---ccCcC--CCCccCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHH
Confidence 111 2235666777655899877633211 12111 11222 13344443322 4431 2 222223477899
Q ss_pred HHHCCCCEEEecchH
Q 018508 294 MKSRGYHMVSGAVDV 308 (355)
Q Consensus 294 ~~~~G~~~vs~~~D~ 308 (355)
.++.|+.-+.+++|.
T Consensus 222 ai~~Gi~KiNi~T~l 236 (285)
T PRK07709 222 AISLGTSKINVNTEN 236 (285)
T ss_pred HHHcCCeEEEeChHH
Confidence 999999999999986
No 221
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.65 E-value=24 Score=34.32 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=84.3
Q ss_pred chHHHHHHHcCC-cEEEEEEecCCHHHHHHhh-hcC---------CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeE
Q 018508 73 PESLKYRLQSNE-TLYGLFLLSFSPTLAEISG-LAG---------YDFVVVDMEHGP--GGISDALACLHALAATGTPAI 139 (355)
Q Consensus 73 ~n~lk~~L~~G~-~~~gl~v~~~sp~~~e~aa-~~G---------~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~i 139 (355)
.+++.+++.+.+ .+.+++=..|.-+.+++.+ .+| .|.|+|.=+|-. .+...+...++. ..+...+
T Consensus 113 t~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~g~~~~~v~~aR~--~~~~~~~ 190 (277)
T PRK08072 113 TRKAVLALDDSHIRICDTRKTTPGLRMFDKYAVVCGGGFNHRFGLYDGVMIKDNHIAFCGSITKAVTSVRE--KLGHMVK 190 (277)
T ss_pred HHHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhcCCcccCCCCCceEEEchhHHHhhCCHHHHHHHHHH--hCCCCCE
Confidence 356666774332 3556665667777776543 444 599999999953 222233223332 2232233
Q ss_pred EcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 140 LRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 140 VRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
|=|.-.+..+++++++.|+|.|++.. -++++++++++.++-| . .+..+--|
T Consensus 191 Igvsv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~~~-i---------------------------~i~AiGGI 241 (277)
T PRK08072 191 IEVETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLVPSA-I---------------------------VTEASGGI 241 (277)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhcCCC-c---------------------------eEEEECCC
Confidence 44444567788999999999999976 6789999999876411 0 01111113
Q ss_pred ccHHHHHHHHHHhccCCccEEEECh
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp 244 (355)
-.+|+.++++. |+|+|.+|.
T Consensus 242 ----t~~ni~~~a~~-Gvd~IAvg~ 261 (277)
T PRK08072 242 ----TLENLPAYGGT-GVDYISLGF 261 (277)
T ss_pred ----CHHHHHHHHHc-CCCEEEECh
Confidence 24788888874 899999997
No 222
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=81.55 E-value=10 Score=36.56 Aligned_cols=82 Identities=7% Similarity=-0.085 Sum_probs=57.2
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+|+++.. +..+|+ ...+.+.++.+...|+|+|.+| +...++.++.+..+.. ..+++=+.+.+...+...
T Consensus 173 ~~~r~~~~~-~~~Igv--ev~s~eea~~A~~~gaDyI~ld----~~~~e~l~~~~~~~~~--~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 173 RRARAAAPF-TLKIEV--EVETLEQLKEALEAGADIIMLD----NMSPEELREAVALLKG--RVLLEASGGITLENIRAY 243 (268)
T ss_pred HHHHHhCCC-CCeEEE--EECCHHHHHHHHHcCCCEEEEC----CcCHHHHHHHHHHcCC--CCcEEEECCCCHHHHHHH
Confidence 344444432 334554 4567888888899999999998 4556666666654321 345666778888999999
Q ss_pred HhcCCCeEeec
Q 018508 154 LDLGPQGVMFP 164 (355)
Q Consensus 154 LdaGa~GImvP 164 (355)
...|+++|.+=
T Consensus 244 a~~Gvd~Iav~ 254 (268)
T cd01572 244 AETGVDYISVG 254 (268)
T ss_pred HHcCCCEEEEE
Confidence 99999998764
No 223
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=81.55 E-value=39 Score=30.98 Aligned_cols=72 Identities=18% Similarity=0.075 Sum_probs=45.3
Q ss_pred ecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCC-CeEEcC----------C-----CCCH-HHHHHHH
Q 018508 92 LSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGT-PAILRL----------P-----ESCP-TWAKKAL 154 (355)
Q Consensus 92 ~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~-~~iVRV----------~-----~~~~-~~i~~aL 154 (355)
.+.+++.++.+...|+|.|++.-+-- .+.+.+.++.+.. +. .+++-+ . ..++ +.++.+.
T Consensus 81 gI~~~e~~~~~~~~Gad~vvigs~~l-~dp~~~~~i~~~~---g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd04732 81 GIRSLEDIERLLDLGVSRVIIGTAAV-KNPELVKELLKEY---GGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFE 156 (234)
T ss_pred CcCCHHHHHHHHHcCCCEEEECchHH-hChHHHHHHHHHc---CCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHH
Confidence 46799999999999999999877753 2344444444432 22 111111 1 2233 3456677
Q ss_pred hcCCCeEeecCCC
Q 018508 155 DLGPQGVMFPMID 167 (355)
Q Consensus 155 daGa~GImvP~Ve 167 (355)
+.|++.|++-.+.
T Consensus 157 ~~ga~~iii~~~~ 169 (234)
T cd04732 157 ELGVKAIIYTDIS 169 (234)
T ss_pred HcCCCEEEEEeec
Confidence 8899999887663
No 224
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=81.50 E-value=63 Score=32.62 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCeEE----cCCC----CC----HHHH----HHHHhcCCCeEeecCCCCHHHHHHH
Q 018508 124 ALACLHALAATGTPAIL----RLPE----SC----PTWA----KKALDLGPQGVMFPMIDSPEAAKEA 175 (355)
Q Consensus 124 a~~~i~a~~~~g~~~iV----RV~~----~~----~~~i----~~aLdaGa~GImvP~Vesaeea~~v 175 (355)
+.+....+...|.++++ |=+. .+ +..+ +-+.+.|||-|=++...+.+...++
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 34455566778887654 3221 11 3333 4567889999999999887776666
No 225
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=81.37 E-value=3.4 Score=39.27 Aligned_cols=54 Identities=31% Similarity=0.484 Sum_probs=38.3
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 100 EISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 100 e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+.+...|||||++|+|.+.... ...++ ..+|-|++|+-.|.-|+.++.+.+
T Consensus 77 e~a~~~~~d~VlvDleG~as~~----------------------------~~~ai-a~sDlVlIP~~~s~lD~~eA~~t~ 127 (231)
T PF07015_consen 77 EAAEASGFDFVLVDLEGGASEL----------------------------NDYAI-ARSDLVLIPMQPSQLDADEAAKTF 127 (231)
T ss_pred HHHHhcCCCEEEEeCCCCCchh----------------------------HHHHH-HHCCEEEECCCCChHHHHHHHHHH
Confidence 4445578999999999864221 01111 247899999999999998888877
Q ss_pred CCC
Q 018508 180 RFP 182 (355)
Q Consensus 180 ~~p 182 (355)
++-
T Consensus 128 ~~v 130 (231)
T PF07015_consen 128 KWV 130 (231)
T ss_pred HHH
Confidence 663
No 226
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=81.36 E-value=20 Score=33.35 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=71.9
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee----------cCCC
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF----------PMID 167 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv----------P~Ve 167 (355)
.+++++..|+++++|---.--+...+...-+.++...|..++|=|... ..+.......-+++ -++-
T Consensus 73 S~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v----~~q~~~~~~~~~vIAYEPvWAIGtG~~a 148 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNV----LTTAAAAALEPDVVAVEPPELIGTGIPV 148 (205)
T ss_pred CHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHH----HHHHHhhhhcCeEEEECCHHHhCCCCCC
Confidence 457888999999998542222443445556666677888887777221 11111111233444 4567
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhH
Q 018508 168 SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 168 saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DL 247 (355)
|++|++.+.+.+||-. .... +-.++-+.-| --+|+.+++..+++||+++|.+=|
T Consensus 149 s~~~~~~v~~~ir~~~----~~~~------------------~~~IlYGGSV----~~~N~~~l~~~~~iDG~LvG~Asl 202 (205)
T TIGR00419 149 SPAQPEVVHGSVRAVK----EVNE------------------SVRVLCGAGI----STGEDAELAAQLGAEGVLLASGSL 202 (205)
T ss_pred CHHHHHHHHHHHHhhh----hhcC------------------CceEEEeCCC----CHHHHHHHhcCCCCCEEEEeeeee
Confidence 8899998888888521 1100 0122222333 136889999999999999997633
No 227
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.34 E-value=11 Score=39.42 Aligned_cols=86 Identities=19% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHcCCcEEEEEE-ecCCHHHHHHhhhcCCcEEEEeCCCC---------CCCHHHHH---HHHHHHHhCCCCeEEcCC
Q 018508 77 KYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDMEHG---------PGGISDAL---ACLHALAATGTPAILRLP 143 (355)
Q Consensus 77 k~~L~~G~~~~gl~v-~~~sp~~~e~aa~~G~D~vilDlEh~---------~~~~~~a~---~~i~a~~~~g~~~iVRV~ 143 (355)
-+.+++.-|-+-++. +....+.++.+..+|+|+|-+-+--+ .....++. ++.+++...+.+++. =.
T Consensus 259 i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via-~g 337 (479)
T PRK07807 259 LRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA-DG 337 (479)
T ss_pred HHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEe-cC
Confidence 344444334455555 77888888888899999987666553 12233333 344444444554432 22
Q ss_pred C-CCHHHHHHHHhcCCCeEee
Q 018508 144 E-SCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~-~~~~~i~~aLdaGa~GImv 163 (355)
+ ..+.++.++|.+||++||+
T Consensus 338 gi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 338 GVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred CCCCHHHHHHHHHcCCCeeec
Confidence 2 2467899999999998886
No 228
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.32 E-value=33 Score=31.89 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHHHhCC--C--CeEEcCCCCCHHHHH
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGP---GGISDALACLHALAATG--T--PAILRLPESCPTWAK 151 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~~~~g--~--~~iVRV~~~~~~~i~ 151 (355)
||.|....+...+.. .-++++.+...|+|.|-+=.=-.+ ...+...+.++.+...+ . ..++|-. ...++
T Consensus 5 lRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~ 81 (265)
T cd03174 5 LRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIE 81 (265)
T ss_pred CCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHH
Confidence 344544444333221 223456667778876554332222 01122333444443222 2 2455532 66789
Q ss_pred HHHhcCCCeEeecCCCC
Q 018508 152 KALDLGPQGVMFPMIDS 168 (355)
Q Consensus 152 ~aLdaGa~GImvP~Ves 168 (355)
++.+.|++.|.++.--+
T Consensus 82 ~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 82 RALEAGVDEVRIFDSAS 98 (265)
T ss_pred HHHhCCcCEEEEEEecC
Confidence 99999999877776544
No 229
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=81.32 E-value=68 Score=32.81 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=52.9
Q ss_pred chHHHHHHHc-CCcEEEEEEecC--CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEc-CCCCC-H
Q 018508 73 PESLKYRLQS-NETLYGLFLLSF--SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILR-LPESC-P 147 (355)
Q Consensus 73 ~n~lk~~L~~-G~~~~gl~v~~~--sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVR-V~~~~-~ 147 (355)
.+.+++..+. +.+.+...+.+. ....++.+..+|+|+|.+-.+.. .....+.+..++..|..+++= ++..+ .
T Consensus 45 ~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~---~~~~~~~i~~a~~~G~~~~~g~~s~~t~~ 121 (430)
T PRK07028 45 MNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLAD---DSTIEDAVRAARKYGVRLMADLINVPDPV 121 (430)
T ss_pred HHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCC---hHHHHHHHHHHHHcCCEEEEEecCCCCHH
Confidence 3455555443 344555443332 23378899999999999754421 223344555555667766652 34333 3
Q ss_pred HHHHHHHhcCCCeEeec
Q 018508 148 TWAKKALDLGPQGVMFP 164 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP 164 (355)
..++.+.+.|++.|.+.
T Consensus 122 e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 122 KRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 45778888999988654
No 230
>PRK14565 triosephosphate isomerase; Provisional
Probab=81.17 E-value=27 Score=33.30 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=73.0
Q ss_pred HHHHhhhcCCcEEEEeCCCCC----C--CHHHHHHHHHHHHhCCCCeEEcCCCCCHH------------HHHHHHhcCCC
Q 018508 98 LAEISGLAGYDFVVVDMEHGP----G--GISDALACLHALAATGTPAILRLPESCPT------------WAKKALDLGPQ 159 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~----~--~~~~a~~~i~a~~~~g~~~iVRV~~~~~~------------~i~~aLdaGa~ 159 (355)
.+++++..|+++++|- |+- + ..+....-++++...|..|+|=|...... ++...+.. ..
T Consensus 77 S~~mLkd~G~~~viiG--HSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~-~~ 153 (237)
T PRK14565 77 SAKMLKECGCSYVILG--HSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPK-HG 153 (237)
T ss_pred CHHHHHHcCCCEEEEC--cccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcC-CC
Confidence 4578889999999975 441 1 22333334456667888899888775321 23333332 12
Q ss_pred eEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 160 GVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 160 GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
-+++ .++-++++++++.+.+|.-- .. -...|| .-| --+|++
T Consensus 154 ~ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~---~~------~~IlYG----------------GSV----~~~N~~ 204 (237)
T PRK14565 154 EFIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYD---SK------SHIIYG----------------GSV----NQENIR 204 (237)
T ss_pred CEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhC---CC------ceEEEc----------------Ccc----CHhhHH
Confidence 2343 56889999999998887420 00 011233 222 236889
Q ss_pred HHhccCCccEEEEChhhH
Q 018508 230 DIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DL 247 (355)
++++.+++||+++|..=|
T Consensus 205 ~l~~~~~iDG~LvG~asl 222 (237)
T PRK14565 205 DLKSINQLSGVLVGSASL 222 (237)
T ss_pred HHhcCCCCCEEEEechhh
Confidence 999999999999998744
No 231
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.04 E-value=15 Score=35.78 Aligned_cols=73 Identities=7% Similarity=-0.062 Sum_probs=53.9
Q ss_pred EEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 86 LYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 86 ~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
.+|+ ...+.+.+..+...|+|+|.+| ..+.+.+++.+..+. ...+++=+.+.....+..++..|+++|.+-.
T Consensus 190 ~Igv--sv~tleea~~A~~~gaDyI~lD----~~~~e~l~~~~~~~~--~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 190 KIEV--ETETEEQVREAVAAGADIIMFD----NRTPDEIREFVKLVP--SAIVTEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EEEE--EeCCHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHhcC--CCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 4454 4568888888999999999997 366677766665432 2234555677889999999999999998755
Q ss_pred C
Q 018508 166 I 166 (355)
Q Consensus 166 V 166 (355)
.
T Consensus 262 l 262 (277)
T PRK08072 262 L 262 (277)
T ss_pred h
Confidence 4
No 232
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=81.01 E-value=58 Score=31.85 Aligned_cols=211 Identities=16% Similarity=0.167 Sum_probs=113.6
Q ss_pred HHHHHHcCCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC-C
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES-C 146 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~-~ 146 (355)
+-+..+++...++.| +..+.+.+ +.+-..+.. |||.+-.+. ...+.+..+++. ++....|+.+=.... +
T Consensus 7 ll~~A~~~~yAV~Af-N~~n~e~~~avi~AAee~~sP-vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 7 MLQDAQAGGYAVPAF-NIHNLETIQAVVETAAEMRSP-VILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred HHHHHHHcCCeEEEE-EeCCHHHHHHHHHHHHHhCCC-EEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 334445567777777 44454433 445556676 444443331 345555666654 456778888887654 5
Q ss_pred HHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc
Q 018508 147 PTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES 221 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET 221 (355)
.+.+.+++++|...||+ |.=++.+..+++++.++.. |.+- -+-.| ++....+.+...-.-..
T Consensus 85 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~-----gv~V----EaElG----~vgg~e~~~~~~~~~~~ 151 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQ-----DCSV----EAELG----RLGGVEDDLSVDEEDAL 151 (282)
T ss_pred HHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHc-----CCeE----EEEEE----ecCCccCCCccccchhc
Confidence 67899999999988886 8888888899999988742 1110 00000 01000111000000000
Q ss_pred HHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHHHHHCC
Q 018508 222 EEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLEMKSRG 298 (355)
Q Consensus 222 ~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~~~~~G 298 (355)
-.-.+.+.++++--|||.|-+.-+-- =|... ..|.+ .+.+++|.++. +++. + |+-..+.++.++.++.|
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~---HG~yk--~~p~Ldf~~L~~I~~~~---~iPLVlHGgSG~~~e~~~~ai~~G 223 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTA---HGLYK--KTPKLDFDRLAEIREVV---DVPLVLHGASDVPDEDVRRTIELG 223 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCcc---ccCcC--CCCccCHHHHHHHHHHh---CCCeEEecCCCCCHHHHHHHHHcC
Confidence 11235666666545899765432211 12111 11222 23344443332 3331 1 22222347788999999
Q ss_pred CCEEEecchHH
Q 018508 299 YHMVSGAVDVG 309 (355)
Q Consensus 299 ~~~vs~~~D~~ 309 (355)
+.-+.+++|..
T Consensus 224 i~KiNi~T~l~ 234 (282)
T TIGR01858 224 ICKVNVATELK 234 (282)
T ss_pred CeEEEeCcHHH
Confidence 99999999963
No 233
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.68 E-value=18 Score=34.93 Aligned_cols=72 Identities=11% Similarity=-0.050 Sum_probs=53.6
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
.+-+...+++.+..+...|+|+|.+|- ...+..++.+..++.....+++=+.+.+...+...+..|+++|.+
T Consensus 183 ~I~vev~t~eea~~A~~~gaD~I~ld~----~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 183 KIEVEVETLEEAEEALEAGADIIMLDN----MSPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eEEEecCCHHHHHHHHHcCCCEEEECC----CCHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 355566788888899999999999975 445666665554432223456667778899999999999999976
No 234
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=80.65 E-value=30 Score=35.76 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred CHHHHHHHHhcCCCeEeecCCCC-HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE-EEccHH
Q 018508 146 CPTWAKKALDLGPQGVMFPMIDS-PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC-QVESEE 223 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImvP~Ves-aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~-mIET~~ 223 (355)
....+..++++|++.|.|-..+. -+.+.+.++.++.. | .++.|++ .|-|++
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~----------------~-----------~~~~vi~G~v~t~~ 277 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKT----------------Y-----------PDLDIIAGNVATAE 277 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHh----------------C-----------CCCCEEEEeCCCHH
Confidence 34557778899999988755321 13344444444311 0 1234444 788999
Q ss_pred HHHHHHHHhccCCccEEEEC--hhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceee-cccCCchhHHHHHHCCCC
Q 018508 224 GVKRAEDIAAVDGVDCVQMG--PLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLA-GFAMPHDAPLEMKSRGYH 300 (355)
Q Consensus 224 av~nieeIaavpgVD~l~iG--p~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g-~~~~d~~~a~~~~~~G~~ 300 (355)
...++-+ -|+|+|-+| |+=-+..- .......|.+ .++.++.+.+++.+++++. |=..++.++.+.+++|.+
T Consensus 278 ~a~~l~~----aGad~i~vg~g~G~~~~t~-~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~ 351 (450)
T TIGR01302 278 QAKALID----AGADGLRVGIGPGSICTTR-IVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD 351 (450)
T ss_pred HHHHHHH----hCCCEEEECCCCCcCCccc-eecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 8888776 278988766 33110000 0001223433 5667777788777776432 223456777788899999
Q ss_pred EEEecchH
Q 018508 301 MVSGAVDV 308 (355)
Q Consensus 301 ~vs~~~D~ 308 (355)
.+.+|+=.
T Consensus 352 ~V~~G~~~ 359 (450)
T TIGR01302 352 AVMLGSLL 359 (450)
T ss_pred EEEECchh
Confidence 99998633
No 235
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.48 E-value=8 Score=38.56 Aligned_cols=66 Identities=12% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHhhhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHh-CC-CCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 97 TLAEISGLAGY--DFVVVDMEHGPGGISDALACLHALAA-TG-TPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 97 ~~~e~aa~~G~--D~vilDlEh~~~~~~~a~~~i~a~~~-~g-~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
+.++.+..+|+ |+|.||.-|+ .-+.+.+++..++. .+ .++++- +-.+....+.+.++|+++|++=.
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g--h~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG--HSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC--chHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEEECC
Confidence 56677778855 9999999994 34556666666643 33 555553 22257788999999999988653
No 236
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.16 E-value=40 Score=31.44 Aligned_cols=171 Identities=13% Similarity=0.098 Sum_probs=99.6
Q ss_pred HHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCC--CeEEcCCCC-CH
Q 018508 76 LKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGT--PAILRLPES-CP 147 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~--~~iVRV~~~-~~ 147 (355)
+.++|.+ .+++.+.- ..+++ .++.+...|+-.+=|=+.. + .+.+.++.+. ..+. ..+|=.... +.
T Consensus 6 ~~~~l~~-~~vi~vir-~~~~~~a~~~~~al~~~Gi~~iEit~~~-~----~a~~~i~~l~~~~~~~p~~~vGaGTV~~~ 78 (213)
T PRK06552 6 ILTKLKA-NGVVAVVR-GESKEEALKISLAVIKGGIKAIEVTYTN-P----FASEVIKELVELYKDDPEVLIGAGTVLDA 78 (213)
T ss_pred HHHHHHH-CCEEEEEE-CCCHHHHHHHHHHHHHCCCCEEEEECCC-c----cHHHHHHHHHHHcCCCCCeEEeeeeCCCH
Confidence 4556654 45555543 33443 5577778899887666642 2 2344444442 2221 244443332 57
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
.++++++++|++-||-|..+ + .++++|+. .++.+++-+.|+.=+..
T Consensus 79 ~~~~~a~~aGA~FivsP~~~-~----~v~~~~~~-----------------------------~~i~~iPG~~T~~E~~~ 124 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSFN-R----ETAKICNL-----------------------------YQIPYLPGCMTVTEIVT 124 (213)
T ss_pred HHHHHHHHcCCCEEECCCCC-H----HHHHHHHH-----------------------------cCCCEECCcCCHHHHHH
Confidence 78999999999999999875 2 34444442 12456666777766655
Q ss_pred HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEec
Q 018508 228 AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~ 305 (355)
+.+ -|.|.|-+=|. +...+.....+.... .+.++ .||+ +.+.+..|++.|+..+.++
T Consensus 125 A~~----~Gad~vklFPa----------~~~G~~~ik~l~~~~-----p~ip~~atGGI--~~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 125 ALE----AGSEIVKLFPG----------STLGPSFIKAIKGPL-----PQVNVMVTGGV--NLDNVKDWFAAGADAVGIG 183 (213)
T ss_pred HHH----cCCCEEEECCc----------ccCCHHHHHHHhhhC-----CCCEEEEECCC--CHHHHHHHHHCCCcEEEEc
Confidence 543 37787776221 222344433332111 22332 3433 4688999999999999999
Q ss_pred chH
Q 018508 306 VDV 308 (355)
Q Consensus 306 ~D~ 308 (355)
+..
T Consensus 184 s~l 186 (213)
T PRK06552 184 GEL 186 (213)
T ss_pred hHH
Confidence 877
No 237
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=80.11 E-value=52 Score=30.78 Aligned_cols=73 Identities=18% Similarity=0.077 Sum_probs=44.7
Q ss_pred cCCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC
Q 018508 93 SFSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 93 ~~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V 166 (355)
..+|. .++.....|+|+ .++||.-. .+.+.-...++.+ +..+.++.|=-.-.+.+.+++++.+|++-|++...
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAI-MGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccc-cCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcce
Confidence 45665 667777889988 68899754 2222222333332 22344444333233467899999999999998653
No 238
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=79.93 E-value=21 Score=35.11 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=52.2
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC-CC-CHHHHHHHHHHHH-hCCCCeEEcCCCC-CHH
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG-PG-GISDALACLHALA-ATGTPAILRLPES-CPT 148 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~-~~-~~~~a~~~i~a~~-~~g~~~iVRV~~~-~~~ 148 (355)
|..+-+++++... -++....+.+.++++...|+|.|++..-.+ .. .......++..+. ..+.++++= .+. ++.
T Consensus 98 p~~~i~~lk~~g~--~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaa-GGI~~~~ 174 (307)
T TIGR03151 98 PGKYIPRLKENGV--KVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAA-GGIADGR 174 (307)
T ss_pred cHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEE-CCCCCHH
Confidence 4556667764332 334567899999999999999999966322 11 1000122222221 223443322 222 466
Q ss_pred HHHHHHhcCCCeEee
Q 018508 149 WAKKALDLGPQGVMF 163 (355)
Q Consensus 149 ~i~~aLdaGa~GImv 163 (355)
.+.+++..||+||++
T Consensus 175 ~~~~al~~GA~gV~i 189 (307)
T TIGR03151 175 GMAAAFALGAEAVQM 189 (307)
T ss_pred HHHHHHHcCCCEeec
Confidence 799999999999886
No 239
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.89 E-value=14 Score=36.07 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=53.3
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
+-+...+.+.++.+...|+|+|.+| ..+.+++++.+.... +..+++=+.+.+...+......|+++|.+=.
T Consensus 192 I~VEv~tleea~eA~~~gaD~I~LD----~~~~e~l~~~v~~~~--~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 192 VEVEVESLDELRQALAAGADIVMLD----ELSLDDMREAVRLTA--GRAKLEASGGINESTLRVIAETGVDYISIGA 262 (277)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHhC--CCCcEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 3445677888889999999999998 456777777665432 3345555667788889999999999998744
No 240
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=79.57 E-value=57 Score=30.86 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=55.3
Q ss_pred cCCH-HHHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC--C
Q 018508 93 SFSP-TLAEISGLAGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI--D 167 (355)
Q Consensus 93 ~~sp-~~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V--e 167 (355)
..+| +.++.+...|+|. +++|+.........-.++++.+ +....++++==.-.+...+.+++.+|+++|++-.. +
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 4467 5777888899987 7789986643333333444433 23344444321122467899999999999998653 6
Q ss_pred CHHHHHHHHHHc
Q 018508 168 SPEAAKEAVSYC 179 (355)
Q Consensus 168 saeea~~vv~a~ 179 (355)
+++-++++.+.+
T Consensus 109 ~p~~~~~~~~~~ 120 (254)
T TIGR00735 109 NPELIYELADRF 120 (254)
T ss_pred ChHHHHHHHHHc
Confidence 777777766543
No 241
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=79.47 E-value=14 Score=34.29 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=56.1
Q ss_pred HHHHH-HcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH
Q 018508 76 LKYRL-QSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 76 lk~~L-~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL 154 (355)
+.+-| .+|=..+|.-....- .++.......|+||+|+|.-..+ ...+++..-...+.+.++=+.-.++..+.++.
T Consensus 21 i~~~l~eag~~~Vg~~~~~~~--~~~~~~~~~pDvVildie~p~rd--~~e~~~~~~~~~~~piv~lt~~s~p~~i~~a~ 96 (194)
T COG3707 21 IREGLLEAGYQRVGEAADGLE--AVEVCERLQPDVVILDIEMPRRD--IIEALLLASENVARPIVALTAYSDPALIEAAI 96 (194)
T ss_pred HHHHHHHcCCeEeeeeccccc--chhHHHhcCCCEEEEecCCCCcc--HHHHHHHhhcCCCCCEEEEEccCChHHHHHHH
Confidence 44444 466677776654333 35666677899999999987555 22233332222344445556667789999999
Q ss_pred hcCCCeEeecCC
Q 018508 155 DLGPQGVMFPMI 166 (355)
Q Consensus 155 daGa~GImvP~V 166 (355)
++|+.|.++=-+
T Consensus 97 ~~Gv~ayivkpi 108 (194)
T COG3707 97 EAGVMAYIVKPL 108 (194)
T ss_pred HcCCeEEEecCc
Confidence 999999877444
No 242
>PRK15447 putative protease; Provisional
Probab=79.40 E-value=6.7 Score=38.37 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=64.4
Q ss_pred EEEecCCHHHH-HHhhhcCCcEEEEeCCCC----CCCHHHHHHHHHHHHhCCCCeEEcCCCC-C-H---HHHHHHHhcCC
Q 018508 89 LFLLSFSPTLA-EISGLAGYDFVVVDMEHG----PGGISDALACLHALAATGTPAILRLPES-C-P---TWAKKALDLGP 158 (355)
Q Consensus 89 l~v~~~sp~~~-e~aa~~G~D~vilDlEh~----~~~~~~a~~~i~a~~~~g~~~iVRV~~~-~-~---~~i~~aLdaGa 158 (355)
+|-|..+.+.+ ..++..|+|.|.+..+.- ++..++..+.+..++..|..++|-+|.. . . ..+.+.++.|.
T Consensus 10 ~~~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~ 89 (301)
T PRK15447 10 YYWPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGE 89 (301)
T ss_pred cCCCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCC
Confidence 34467777644 556677999999997763 4788999999988888999988877775 2 2 34677888888
Q ss_pred CeEeecCCCCHHHHHHHHH
Q 018508 159 QGVMFPMIDSPEAAKEAVS 177 (355)
Q Consensus 159 ~GImvP~Vesaeea~~vv~ 177 (355)
++|++ .+...++.+.+
T Consensus 90 ~~v~v---~d~g~l~~~~e 105 (301)
T PRK15447 90 FLVEA---NDLGAVRLLAE 105 (301)
T ss_pred CEEEE---eCHHHHHHHHh
Confidence 88885 77777766665
No 243
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=79.11 E-value=19 Score=35.04 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=84.0
Q ss_pred chHHHHHHHcCC---cEEEEEEecCCHHHHHHh-hhcCC---------cEEEEeCCCCCC--CHHHHHHHHHHHHhC--C
Q 018508 73 PESLKYRLQSNE---TLYGLFLLSFSPTLAEIS-GLAGY---------DFVVVDMEHGPG--GISDALACLHALAAT--G 135 (355)
Q Consensus 73 ~n~lk~~L~~G~---~~~gl~v~~~sp~~~e~a-a~~G~---------D~vilDlEh~~~--~~~~a~~~i~a~~~~--g 135 (355)
.+.+-++++... .++.+.=..|.-+.+++. ..+|- |.|+|=-+|-.+ +.+...+.+..++.. .
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~ 188 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPE 188 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCC
Confidence 356667776522 344444456666666654 44453 444444444321 112344455544432 3
Q ss_pred CCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEE
Q 018508 136 TPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLI 215 (355)
Q Consensus 136 ~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~v 215 (355)
..+.|=+. +.++.+.++++|++.||+=+ -++++++++++.++.. +.++
T Consensus 189 ~kIeVEv~--tleea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~---------------------------~~~~-- 236 (277)
T TIGR01334 189 RKITVEAD--TIEQALTVLQASPDILQLDK-FTPQQLHHLHERLKFF---------------------------DHIP-- 236 (277)
T ss_pred CCEEEECC--CHHHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhcc---------------------------CCCE--
Confidence 44555554 56788999999999999987 6899999999987521 0111
Q ss_pred EEEEccHHH--HHHHHHHhccCCccEEEECh
Q 018508 216 MCQVESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 216 i~mIET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
.||-..| ++|+.++++. |||.++.|.
T Consensus 237 --~leasGGI~~~ni~~ya~~-GvD~is~ga 264 (277)
T TIGR01334 237 --TLAAAGGINPENIADYIEA-GIDLFITSA 264 (277)
T ss_pred --EEEEECCCCHHHHHHHHhc-CCCEEEeCc
Confidence 2444444 4788888875 799999886
No 244
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=78.98 E-value=50 Score=29.95 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=91.7
Q ss_pred HHHHHHHcCCcEEEEEEecCCH----HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-CCCCHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFSP----TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-PESCPTW 149 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp----~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-~~~~~~~ 149 (355)
.+.++|.. .+++.+.- ..++ ..++.+...|..+|=+-+-+. +..+....++... . ...+.. .-...++
T Consensus 4 ~~~~~l~~-~~~~~v~r-~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~--~~~e~~~~~~~~~--~-~~~~g~gtvl~~d~ 76 (187)
T PRK07455 4 DWLAQLQQ-HRAIAVIR-APDLELGLQMAEAVAAGGMRLIEITWNSD--QPAELISQLREKL--P-ECIIGTGTILTLED 76 (187)
T ss_pred HHHHHHHh-CCEEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCC--CHHHHHHHHHHhC--C-CcEEeEEEEEcHHH
Confidence 45566654 44555443 3333 356777888999888776543 2233333333321 1 111110 0112367
Q ss_pred HHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 150 AKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 150 i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
+..++++|++||+.|+.. .+.+ .+.+... +..++-+-|++-+..+.
T Consensus 77 ~~~A~~~gAdgv~~p~~~-~~~~-~~~~~~~--------------------------------~~~i~G~~t~~e~~~A~ 122 (187)
T PRK07455 77 LEEAIAAGAQFCFTPHVD-PELI-EAAVAQD--------------------------------IPIIPGALTPTEIVTAW 122 (187)
T ss_pred HHHHHHcCCCEEECCCCC-HHHH-HHHHHcC--------------------------------CCEEcCcCCHHHHHHHH
Confidence 889999999999999986 3333 2222111 01111155665554444
Q ss_pred HHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecch
Q 018508 230 DIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
+ .|.|.|-+=|. .....++....+. ... ..++ ++||+ +++.+..+++.|+..+.+++.
T Consensus 123 ~----~Gadyv~~Fpt---------~~~~G~~~l~~~~---~~~--~~ipvvaiGGI--~~~n~~~~l~aGa~~vav~s~ 182 (187)
T PRK07455 123 Q----AGASCVKVFPV---------QAVGGADYIKSLQ---GPL--GHIPLIPTGGV--TLENAQAFIQAGAIAVGLSGQ 182 (187)
T ss_pred H----CCCCEEEECcC---------CcccCHHHHHHHH---hhC--CCCcEEEeCCC--CHHHHHHHHHCCCeEEEEehh
Confidence 3 47787766111 0112333332222 211 1234 34444 578899999999999999876
Q ss_pred H
Q 018508 308 V 308 (355)
Q Consensus 308 ~ 308 (355)
.
T Consensus 183 i 183 (187)
T PRK07455 183 L 183 (187)
T ss_pred c
Confidence 4
No 245
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.89 E-value=67 Score=31.31 Aligned_cols=208 Identities=18% Similarity=0.221 Sum_probs=111.3
Q ss_pred HHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHH-HHhCCCCeEEcCCCC-C
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHA-LAATGTPAILRLPES-C 146 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a-~~~~g~~~iVRV~~~-~ 146 (355)
+-++-+.+...++.|. ..+.+. ++.+...+... ||.+-.+. ...+.+..+++. ++....|+.+=.... +
T Consensus 4 lL~~A~~~~yaV~AfN-~~n~e~~~avi~AAe~~~sPv-Ii~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 4 LLKKAREGGYAVGAFN-INNLETLKAILEAAEETRSPV-ILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred HHHHHHHCCceEEEEe-eCCHHHHHHHHHHHHHhCCCE-EEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 3344455677777774 444443 34555667674 44443331 334556666654 345678888888666 4
Q ss_pred HHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceE-EEEEEc
Q 018508 147 PTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELL-IMCQVE 220 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~-vi~mIE 220 (355)
...+.+++++|...||+ |+=++.+..+++++.++.. |.+. -+-.| ++....+... --...-
T Consensus 82 ~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~-----gv~V----EaElG----~i~g~e~~~~~~~~~~T 148 (276)
T cd00947 82 FELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAY-----GVSV----EAELG----RIGGEEDGVVGDEGLLT 148 (276)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHc-----CCeE----EEEEe----eecCccCCcccccccCC
Confidence 67899999999988885 7777888888999888632 2110 00001 0000000000 001111
Q ss_pred cHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHHHHHC
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLEMKSR 297 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~~~~~ 297 (355)
+ .+.+.+++.--|||.|.+.-+-. =|.... ..|.+ .+.++++.++. +++. + |+-..+.++.++..+.
T Consensus 149 ~---pe~a~~Fv~~TgvD~LAvsiGt~---HG~Y~~-~~p~L~~~~L~~i~~~~---~vPLVlHGgSG~~~e~~~~ai~~ 218 (276)
T cd00947 149 D---PEEAEEFVEETGVDALAVAIGTS---HGAYKG-GEPKLDFDRLKEIAERV---NVPLVLHGGSGIPDEQIRKAIKL 218 (276)
T ss_pred C---HHHHHHHHHHHCCCEEEeccCcc---ccccCC-CCCccCHHHHHHHHHHh---CCCEEEeCCCCCCHHHHHHHHHc
Confidence 2 35566666545888765532211 111101 02222 12334443333 3331 2 2222234778899999
Q ss_pred CCCEEEecchH
Q 018508 298 GYHMVSGAVDV 308 (355)
Q Consensus 298 G~~~vs~~~D~ 308 (355)
|+.-+-+++|.
T Consensus 219 Gi~KiNi~T~l 229 (276)
T cd00947 219 GVCKININTDL 229 (276)
T ss_pred CCeEEEeChHH
Confidence 99999999985
No 246
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=78.88 E-value=33 Score=33.81 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhCCCCeEEcCCCCC-------HH-HHHHH--HhcCCCeEe----ecCC------CCHHHHHHHHHHc
Q 018508 120 GISDALACLHALAATGTPAILRLPESC-------PT-WAKKA--LDLGPQGVM----FPMI------DSPEAAKEAVSYC 179 (355)
Q Consensus 120 ~~~~a~~~i~a~~~~g~~~iVRV~~~~-------~~-~i~~a--LdaGa~GIm----vP~V------esaeea~~vv~a~ 179 (355)
..+...+.++.....+.+++|-|...+ .. ....+ +..++++|. .|++ +.++.+.++++++
T Consensus 113 g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av 192 (327)
T cd04738 113 GADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAV 192 (327)
T ss_pred cHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHH
Confidence 344444444433224678899997764 12 22222 222377654 4655 3457777777776
Q ss_pred CCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc---cHHHHHHHHHHhccCCccEEEE-Chh-hHH------
Q 018508 180 RFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE---SEEGVKRAEDIAAVDGVDCVQM-GPL-DLS------ 248 (355)
Q Consensus 180 ~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE---T~~av~nieeIaavpgVD~l~i-Gp~-DLs------ 248 (355)
+..-. .....+.+++-+- +.+-+..+-+.+.--|+|+|.+ ++. +..
T Consensus 193 ~~~~~-----------------------~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~ 249 (327)
T cd04738 193 KEERN-----------------------KLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSP 249 (327)
T ss_pred HHHHh-----------------------hcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccccccccccc
Confidence 53100 0001233444441 2112222222232348999885 421 110
Q ss_pred --hhc-CCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchH
Q 018508 249 --ASM-GYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 249 --~sl-G~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
... |+.+...+|..++.+.++.+.+. ..++ .+|++ .+.+++.+++..|.+.|.+++-.
T Consensus 250 ~~~~~gG~sG~~~~~~~l~~v~~l~~~~~-~~ipIi~~GGI-~t~~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 250 LANETGGLSGAPLKERSTEVLRELYKLTG-GKIPIIGVGGI-SSGEDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred ccCCCCccCChhhhHHHHHHHHHHHHHhC-CCCcEEEECCC-CCHHHHHHHHHcCCCHHhccHHH
Confidence 001 23333334444555555544432 1233 24444 35678888888998888776543
No 247
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=78.76 E-value=11 Score=36.08 Aligned_cols=100 Identities=8% Similarity=-0.020 Sum_probs=65.3
Q ss_pred HHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCC-----CCeEEcCCCCCHHHHHH
Q 018508 78 YRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG-----TPAILRLPESCPTWAKK 152 (355)
Q Consensus 78 ~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g-----~~~iVRV~~~~~~~i~~ 152 (355)
...+.+....-.-++.+++..+..+...|++.|++=+=+ +.+++++.+++++..+ ..+..|-..-... -..
T Consensus 56 ~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~---taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~-~~y 131 (249)
T TIGR03239 56 MALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVE---SAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTV-PDY 131 (249)
T ss_pred HHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcC---CHHHHHHHHHHcCCCCCCcCCCCcchhhhccCCh-HHH
Confidence 334444444455668889999999999999999875543 5688998888876431 1122333222110 011
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~ 181 (355)
.-.+.....++|||||++-++++.+.+..
T Consensus 132 ~~~~n~~~~vi~~IEt~~av~n~~eI~av 160 (249)
T TIGR03239 132 FATINDNITVLVQIESQKGVDNVDEIAAV 160 (249)
T ss_pred HHHhccccEEEEEECCHHHHHhHHHHhCC
Confidence 12233467899999999999999998875
No 248
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.33 E-value=25 Score=33.20 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=44.3
Q ss_pred cCCHH-HHHHhhhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHhCCCCeEEcCCCCCH-HHHHHHHhcC
Q 018508 93 SFSPT-LAEISGLAGYDFVVVDMEHGPGG-ISDALACLHALAATGTPAILRLPESCP-TWAKKALDLG 157 (355)
Q Consensus 93 ~~sp~-~~e~aa~~G~D~vilDlEh~~~~-~~~a~~~i~a~~~~g~~~iVRV~~~~~-~~i~~aLdaG 157 (355)
..+|. .++.+..+|+|.|++=.- |.+ .++...++..++..|..+++=++...+ ..+..+++..
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dl--p~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~ 152 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDL--LIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS 152 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCC--CCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC
Confidence 34555 588999999999988211 222 456677888888889988888887664 4567777663
No 249
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=78.23 E-value=72 Score=31.29 Aligned_cols=209 Identities=16% Similarity=0.218 Sum_probs=112.9
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC----CCHHHHHHHHHHH-HhCC--CCeEEcCC
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP----GGISDALACLHAL-AATG--TPAILRLP 143 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~----~~~~~a~~~i~a~-~~~g--~~~iVRV~ 143 (355)
.+-+.-+++...++.| +..+.+.+ +.+-..+... ||.+-.+. .+.+.+..+++.+ +... .|+.+=..
T Consensus 8 ~lL~~A~~~~yAV~Af-N~~n~e~~~avi~AAee~~sPv-Il~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLD 85 (286)
T PRK08610 8 EMLIDAKENGYAVGQY-NLNNLEFTQAILEASQEENAPV-ILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLD 85 (286)
T ss_pred HHHHHHHHCCceEEEE-EECCHHHHHHHHHHHHHHCCCE-EEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence 3444455677788876 44455433 4445566774 44443331 1245566666654 3444 57777765
Q ss_pred CC-CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceE-EE
Q 018508 144 ES-CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELL-IM 216 (355)
Q Consensus 144 ~~-~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~-vi 216 (355)
.. +.+.+.+++++|...||+ |.=++.+.-+++++.++.. |.+- -+-.|. +....+... -.
T Consensus 86 Hg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~-----gv~V----EaElG~----vgg~ed~~~~~~ 152 (286)
T PRK08610 86 HGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEK-----GVSV----EAELGT----VGGQEDDVVADG 152 (286)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEEec----cCCccCCCCCcc
Confidence 54 467899999999988886 8888888889999988732 1110 000010 000000000 00
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCchhHHH
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHDAPLE 293 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~~a~~ 293 (355)
...-+ .+.+.++++--|||.|-+.-+-- =|... ..|.+ .+.+++|.++. +++. + |+-..+.++.++
T Consensus 153 ~~yT~---peea~~Fv~~TgvD~LAvaiGt~---HG~Y~--~~p~Ld~~~L~~I~~~~---~vPLVLHGgSG~~~e~~~~ 221 (286)
T PRK08610 153 IIYAD---PKECQELVEKTGIDALAPALGSV---HGPYK--GEPKLGFKEMEEIGLST---GLPLVLHGGTGIPTKDIQK 221 (286)
T ss_pred cccCC---HHHHHHHHHHHCCCEEEeecccc---ccccC--CCCCCCHHHHHHHHHHH---CCCEEEeCCCCCCHHHHHH
Confidence 11223 35666777555899765533211 12111 11222 23344443332 4431 2 222223477889
Q ss_pred HHHCCCCEEEecchHH
Q 018508 294 MKSRGYHMVSGAVDVG 309 (355)
Q Consensus 294 ~~~~G~~~vs~~~D~~ 309 (355)
.++.|+.-+.+++|..
T Consensus 222 ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 222 AIPFGTAKINVNTENQ 237 (286)
T ss_pred HHHCCCeEEEeccHHH
Confidence 9999999999999963
No 250
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=78.13 E-value=6 Score=37.41 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=51.4
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHH
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKE 174 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~ 174 (355)
..+.++++..+|.|.+++---++. +.+...+.+..++....|+++=+.+. . .+-.++|++++|-+=+..+...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~v-t~~~~~~~v~~ik~~~lPvilfp~~~--~----~i~~~aDa~l~~svlNs~~~~~ 88 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGV-TYEKTDTLIEALRRYGLPIILFPSNP--T----NVSRDADALFFPSVLNSDDPYW 88 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcc-cHHHHHHHHHHHhccCCCEEEeCCCc--c----ccCcCCCEEEEEEeecCCCchH
Confidence 456788999999999999877764 44677777777777777766633222 1 2236799999999866555443
No 251
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.82 E-value=50 Score=32.62 Aligned_cols=28 Identities=14% Similarity=0.034 Sum_probs=20.4
Q ss_pred EEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 218 QVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 218 mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
..|.....+.++++++-..+|+|.+|..
T Consensus 297 ~~G~i~t~~~a~~~l~~g~aD~V~lgR~ 324 (338)
T cd04733 297 VTGGFRTRAAMEQALASGAVDGIGLARP 324 (338)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeeeChH
Confidence 3455556677777777667999999976
No 252
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=77.71 E-value=53 Score=29.54 Aligned_cols=68 Identities=29% Similarity=0.406 Sum_probs=44.0
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
..+|.- +.-++..++.+...|+|++.. |....+ .+.+++..+...++=+. ++..+.++++.|++.|.+
T Consensus 56 ~~iGag-~v~~~~~~~~a~~~Ga~~i~~-----p~~~~~---~~~~~~~~~~~~i~gv~--t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 56 ALIGAG-TVLTPEQADAAIAAGAQFIVS-----PGLDPE---VVKAANRAGIPLLPGVA--TPTEIMQALELGADIVKL 123 (190)
T ss_pred CEEEEE-eCCCHHHHHHHHHcCCCEEEc-----CCCCHH---HHHHHHHcCCcEECCcC--CHHHHHHHHHCCCCEEEE
Confidence 444422 456688889999999999963 432233 33444445555554333 567889999999998754
No 253
>PRK07695 transcriptional regulator TenI; Provisional
Probab=77.45 E-value=16 Score=33.14 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=50.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--------CCCHHHHHHHHHHHHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--------PGGISDALACLHALAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--------~~~~~~a~~~i~a~~~~g~~~iVRV~~~ 145 (355)
..+|+++ ++..+|. ...+.+.+..+...|+|++++.--+. +.+.+..+.... ... .+++=+.+.
T Consensus 87 ~~~r~~~--~~~~ig~--s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~---~~~-ipvia~GGI 158 (201)
T PRK07695 87 RSVREKF--PYLHVGY--SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIAR---ALS-IPVIAIGGI 158 (201)
T ss_pred HHHHHhC--CCCEEEE--eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH---hCC-CCEEEEcCC
Confidence 3444443 3445666 45678888888899999998753221 112222222221 123 445556777
Q ss_pred CHHHHHHHHhcCCCeEee
Q 018508 146 CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImv 163 (355)
++..+..++..|++||.+
T Consensus 159 ~~~~~~~~~~~Ga~gvav 176 (201)
T PRK07695 159 TPENTRDVLAAGVSGIAV 176 (201)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 888899999999999853
No 254
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.39 E-value=46 Score=31.15 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=94.3
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHh-CCCCeEEcC--CCCCH-HHHHHHHhcCCCeEeecCCCCHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAA-TGTPAILRL--PESCP-TWAKKALDLGPQGVMFPMIDSPE 170 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~-~g~~~iVRV--~~~~~-~~i~~aLdaGa~GImvP~Vesae 170 (355)
..+.++..+|+||+=+|.-|+-+- ..--.-.+..++. .+.+++.-+ --.+| .++....++||+.+-+ |+|-.+
T Consensus 21 ~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tf-H~E~~q 99 (224)
T KOG3111|consen 21 AECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTF-HYEATQ 99 (224)
T ss_pred HHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEE-EEeecc
Confidence 345678889999999999999321 1111112333332 333322111 11134 3678888999987776 556666
Q ss_pred HHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhh
Q 018508 171 AAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSAS 250 (355)
Q Consensus 171 ea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~s 250 (355)
....+++.+|. +| .++.+.|---.-|+.++..+. .+|.+.+-+ ..
T Consensus 100 ~~~~lv~~ir~-----~G------------------------mk~G~alkPgT~Ve~~~~~~~--~~D~vLvMt----Ve 144 (224)
T KOG3111|consen 100 KPAELVEKIRE-----KG------------------------MKVGLALKPGTPVEDLEPLAE--HVDMVLVMT----VE 144 (224)
T ss_pred CHHHHHHHHHH-----cC------------------------CeeeEEeCCCCcHHHHHHhhc--cccEEEEEE----ec
Confidence 67777777763 11 234444433334677777665 578777632 12
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc--cCCchhHHHHHHCCCCEEEecchH
Q 018508 251 MGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF--AMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 251 lG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~--~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
=|..+|.- +.+.+.++ +..|++.-..-..+ ...++.+....+.|.+.++.|+-+
T Consensus 145 PGFGGQkF---me~mm~KV-~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsav 200 (224)
T KOG3111|consen 145 PGFGGQKF---MEDMMPKV-EWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAV 200 (224)
T ss_pred CCCchhhh---HHHHHHHH-HHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEeccee
Confidence 23333332 23344443 34444332211111 224566777789999998877543
No 255
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=77.24 E-value=13 Score=37.39 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=43.0
Q ss_pred HHHHHHhhh--cCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 96 PTLAEISGL--AGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 96 p~~~e~aa~--~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
.+.++.+.. .|.|+|+||.-|+-. +...++++.++. .+...++==|-..++..+.++++|||+|-|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs--~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKV 178 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYS--EHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKV 178 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcH--HHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEE
Confidence 345666665 599999999999842 344555655543 232333333445677888899999998753
No 256
>PLN02591 tryptophan synthase
Probab=77.23 E-value=34 Score=32.81 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=60.0
Q ss_pred hHHHHHHHc-CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCC-----HHHHHHHHHHHH-hCCCCeEEcCCCCC
Q 018508 74 ESLKYRLQS-NETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGG-----ISDALACLHALA-ATGTPAILRLPESC 146 (355)
Q Consensus 74 n~lk~~L~~-G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~-----~~~a~~~i~a~~-~~g~~~iVRV~~~~ 146 (355)
..+++++++ |=..+-+..|..+++.++.++...-+||.+=---+... .+...+.+..++ ..+.+++|-..-.+
T Consensus 121 ~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~ 200 (250)
T PLN02591 121 EALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISK 200 (250)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCC
Confidence 456666655 43444444477777788888777777776522222211 234455555554 36788888877677
Q ss_pred HHHHHHHHhcCCCeEee
Q 018508 147 PTWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv 163 (355)
+++++++++.|+|||+|
T Consensus 201 ~e~v~~~~~~GADGvIV 217 (250)
T PLN02591 201 PEHAKQIAGWGADGVIV 217 (250)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 99999999999999887
No 257
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=77.18 E-value=12 Score=35.99 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=45.3
Q ss_pred EecCCHHHHHHhhhcCCcEEEE--eCCCC---CCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 91 LLSFSPTLAEISGLAGYDFVVV--DMEHG---PGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vil--DlEh~---~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
+-.+++..++.+...|+|+|.- .+-.+ ..+.+ +|+.+.. .+.++++==.=..+.+..++++.|++||++=
T Consensus 129 yc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~----~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 129 YCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPY----NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHH----HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3478999999999999999943 22222 12322 2333222 3556655423335889999999999998863
No 258
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=76.79 E-value=50 Score=28.75 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=57.3
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~~i~~ 152 (355)
..++..|..... .+....+.....+.+....+|.+++|+.-...+--++...++... ....++++=....+......
T Consensus 16 ~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~ 93 (226)
T TIGR02154 16 ELIAYNLEKAGY--DVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTARGEEEDRVR 93 (226)
T ss_pred HHHHHHHHHCCC--EEEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEecCCCHHHHHH
Confidence 345666654222 222222333455666667899999998765433333333333211 12345555444455667788
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
++++|+++++.- -.+.+++...+..+
T Consensus 94 ~~~~Ga~~~l~k-p~~~~~l~~~i~~~ 119 (226)
T TIGR02154 94 GLETGADDYITK-PFSPRELLARIKAV 119 (226)
T ss_pred HHhcCcceEEeC-CCCHHHHHHHHHHH
Confidence 999999987644 34566766555554
No 259
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=76.76 E-value=81 Score=31.16 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=55.0
Q ss_pred hHHHHHHHcCCcEEEEEEecC-----CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCC-CeEEcCCCCCH
Q 018508 74 ESLKYRLQSNETLYGLFLLSF-----SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGT-PAILRLPESCP 147 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~-----sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~-~~iVRV~~~~~ 147 (355)
+.+|+++.. ...+..-+..+ .+.+++.+...|.+.+. ..+.+++..+..+ |. ..++=++...+
T Consensus 16 ~~l~~~~~~-~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~------vas~~Ea~~~~~~----g~~~~i~~~~~~~~ 84 (367)
T cd00430 16 RVIRRLLGP-GTKIMAVVKADAYGHGAVEVAKALEEAGADYFA------VATLEEALELREA----GITAPILVLGGTPP 84 (367)
T ss_pred HHHHHhCCC-CCEEEEEEeeccccCcHHHHHHHHHHCCCCEEE------ECcHHHHHHHHhc----CCCCCEEEEeCCCH
Confidence 345555543 22233333443 47888888888887543 2455666554432 22 22332444456
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
..+..+++. ++ .+.|+|.++++.+.+.++
T Consensus 85 ~~~~~~~~~---~i-~~~vds~~~l~~l~~~a~ 113 (367)
T cd00430 85 EEAEEAIEY---DL-TPTVSSLEQAEALSAAAA 113 (367)
T ss_pred HHHHHHHHc---CC-EEEECCHHHHHHHHHHHH
Confidence 778888876 44 567899999999888764
No 260
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=76.47 E-value=71 Score=30.35 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=52.7
Q ss_pred CCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC--CCC
Q 018508 94 FSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPM--IDS 168 (355)
Q Consensus 94 ~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~--Ves 168 (355)
.+|. .++.....|+|. +++|+.-.......-.++++.+ +..+.++++-=.-.+...+.+++..|+++|++.. .++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 3664 567888899976 7889976632222112233322 2234454443222345678889999999999875 366
Q ss_pred HHHHHHHHHHc
Q 018508 169 PEAAKEAVSYC 179 (355)
Q Consensus 169 aeea~~vv~a~ 179 (355)
++-++++.+..
T Consensus 110 ~~~~~~~~~~~ 120 (258)
T PRK01033 110 PDLITEAAERF 120 (258)
T ss_pred HHHHHHHHHHh
Confidence 66677776654
No 261
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=76.40 E-value=84 Score=31.53 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred CCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 134 TGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 134 ~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
.+.+++|.-- .....++++.++|+++|+|-
T Consensus 212 ~~~PvivKgv-~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 212 TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEE
Confidence 4556676622 34666777888888887764
No 262
>PLN02429 triosephosphate isomerase
Probab=76.31 E-value=42 Score=33.43 Aligned_cols=128 Identities=15% Similarity=0.060 Sum_probs=72.7
Q ss_pred HHHHhhhcCCcEEEEeCCCCC----C--CHHHHHHHHHHHHhCCCCeEEcCCCCCH------------HHHHHHHhcC--
Q 018508 98 LAEISGLAGYDFVVVDMEHGP----G--GISDALACLHALAATGTPAILRLPESCP------------TWAKKALDLG-- 157 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~----~--~~~~a~~~i~a~~~~g~~~iVRV~~~~~------------~~i~~aLdaG-- 157 (355)
.+++++..|+.+++|- |+- + +.+....-+.++...|..|+|=|.+... .+++.+++.=
T Consensus 139 Sa~mLkd~Gv~~ViiG--HSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~ 216 (315)
T PLN02429 139 SVEQLKDLGCKWVILG--HSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPS 216 (315)
T ss_pred CHHHHHHcCCCEEEeC--ccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCc
Confidence 4577778888888874 331 1 2233333445566788999988887531 1344444321
Q ss_pred CCeEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 158 PQGVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 158 a~GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..-|++ .++-|++|++++.+.+|.-- . ..|+.. ...+-.++-+.-| --+|
T Consensus 217 ~~~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l---~---------~~~~~~----va~~irILYGGSV----~~~N 276 (315)
T PLN02429 217 WDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWL---K---------KNVSEE----VASKTRIIYGGSV----NGGN 276 (315)
T ss_pred ccceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHH---H---------HHhhhh----hccCceEEEcCcc----CHHH
Confidence 123455 56788899988887776210 0 000000 0001122222223 2368
Q ss_pred HHHHhccCCccEEEEChhhH
Q 018508 228 AEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DL 247 (355)
+.+|+..++|||+++|..=|
T Consensus 277 ~~el~~~~diDG~LVGgASL 296 (315)
T PLN02429 277 SAELAKEEDIDGFLVGGASL 296 (315)
T ss_pred HHHHhcCCCCCEEEeeccee
Confidence 89999999999999998743
No 263
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=76.25 E-value=27 Score=33.33 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=75.3
Q ss_pred HHHHhhhcCCcEEEEeCCCCC----CCHHHHHHHHHHHHhCCCCeEEcCCCCCHH--------HHHHHHhcCC------C
Q 018508 98 LAEISGLAGYDFVVVDMEHGP----GGISDALACLHALAATGTPAILRLPESCPT--------WAKKALDLGP------Q 159 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~----~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~--------~i~~aLdaGa------~ 159 (355)
.++++...|.++++|---.-- -+.+....-+.++...|..|+|=|...... .+.+-+.... .
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 468889999999997532111 234455556666777899999988876421 1222222221 1
Q ss_pred eEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 160 GVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 160 GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
-+++ .++-|++|++++.+.+|..-.. .||.. ..+-+++-+.-| ++ +|+.
T Consensus 156 ~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~------------~~~~~-----~~~~~IlYGGSV-~~---~N~~ 214 (242)
T cd00311 156 PVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAE------------LYGEV-----AEKVRILYGGSV-NP---ENAA 214 (242)
T ss_pred CeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHH------------hcccc-----cCceeEEECCCC-CH---HHHH
Confidence 2333 3566788888777776532000 01000 001122333333 22 8999
Q ss_pred HHhccCCccEEEEChhhH
Q 018508 230 DIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DL 247 (355)
+|++.+.|||+++|.+=|
T Consensus 215 ~l~~~~~vDG~LVG~Asl 232 (242)
T cd00311 215 ELLAQPDIDGVLVGGASL 232 (242)
T ss_pred HHhcCCCCCEEEeehHhh
Confidence 999999999999998754
No 264
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=75.42 E-value=37 Score=32.75 Aligned_cols=126 Identities=20% Similarity=0.149 Sum_probs=71.2
Q ss_pred CcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCC------CCHHHHHHHHHHHHhCCCC--eE--EcCCC------CC
Q 018508 84 ETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGP------GGISDALACLHALAATGTP--AI--LRLPE------SC 146 (355)
Q Consensus 84 ~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~------~~~~~a~~~i~a~~~~g~~--~i--VRV~~------~~ 146 (355)
...+|+-+-.++ ...+..+..+|+|||=++.=-+. .-...+.+.++.-+.-+.. ++ |++-. .+
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~ 159 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRD 159 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCC
Confidence 356888887744 45788999999999875532221 1123344455443222222 22 11111 11
Q ss_pred H-HHHHHH-HhcCCCeEeecCCC-----CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 147 P-TWAKKA-LDLGPQGVMFPMID-----SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 147 ~-~~i~~a-LdaGa~GImvP~Ve-----saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
. ..++.+ -..++|||++.--. +.++++++.+.+..| +. |
T Consensus 160 ~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~P------------------------------Vl----v 205 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVP------------------------------VL----V 205 (254)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCC------------------------------EE----E
Confidence 1 123333 45689999998776 455566666555422 11 2
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChh
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
=|=--.+|+.++++ ..|++++|+.
T Consensus 206 GSGvt~~Ni~~~l~--~ADG~IVGS~ 229 (254)
T PF03437_consen 206 GSGVTPENIAEYLS--YADGAIVGSY 229 (254)
T ss_pred ecCCCHHHHHHHHH--hCCEEEEeee
Confidence 23333578888886 3799999986
No 265
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=74.86 E-value=23 Score=34.13 Aligned_cols=71 Identities=13% Similarity=-0.030 Sum_probs=53.6
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
..+|+ ...+.+.+..+...|+|+|.+|- ...++.++.++.+.. ..+++=+.+.+...+....+.|+++|.+
T Consensus 179 ~~Igv--ev~t~eea~~A~~~gaDyI~ld~----~~~e~lk~~v~~~~~--~ipi~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 179 LKIEV--EVESLEEAEEAAEAGADIIMLDN----MKPEEIKEAVQLLKG--RVLLEASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CeEEE--EeCCHHHHHHHHHcCCCEEEECC----CCHHHHHHHHHHhcC--CCcEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 34554 45688888899999999999974 555777766655421 2456667788899999999999999987
No 266
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=74.23 E-value=93 Score=32.65 Aligned_cols=135 Identities=15% Similarity=0.049 Sum_probs=79.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCCeEee--cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 139 ILRLPESCPTWAKKALDLGPQGVMF--PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 139 iVRV~~~~~~~i~~aLdaGa~GImv--P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
.|.+.......+..++++|++.|++ -+-++ +-+..+++.++.. ..++.++
T Consensus 219 av~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~---------------------------~~~~~vi 270 (475)
T TIGR01303 219 AVGINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRAL---------------------------DLGVPIV 270 (475)
T ss_pred eeeeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHH---------------------------CCCCeEE
Confidence 4555544566788889999998775 44333 5555666666521 0124455
Q ss_pred EE-EccHHHHHHHHHHhccCCccEEEECh--hhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce-eecccCCchhHH
Q 018508 217 CQ-VESEEGVKRAEDIAAVDGVDCVQMGP--LDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMPHDAPL 292 (355)
Q Consensus 217 ~m-IET~~av~nieeIaavpgVD~l~iGp--~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d~~~a~ 292 (355)
+- +-|.++..++.+. |+|+|-+|- +=-+..-++. ...-|. ..++-.+++++++.++++ +.|=...+.++.
T Consensus 271 ~g~~~t~~~~~~l~~~----G~d~i~vg~g~Gs~~ttr~~~-~~g~~~-~~a~~~~~~~~~~~~~~viadGgi~~~~di~ 344 (475)
T TIGR01303 271 AGNVVSAEGVRDLLEA----GANIIKVGVGPGAMCTTRMMT-GVGRPQ-FSAVLECAAEARKLGGHVWADGGVRHPRDVA 344 (475)
T ss_pred EeccCCHHHHHHHHHh----CCCEEEECCcCCccccCcccc-CCCCch-HHHHHHHHHHHHHcCCcEEEeCCCCCHHHHH
Confidence 54 8899988888762 778877543 2222111111 112233 344555666777777653 222234566677
Q ss_pred HHHHCCCCEEEecch
Q 018508 293 EMKSRGYHMVSGAVD 307 (355)
Q Consensus 293 ~~~~~G~~~vs~~~D 307 (355)
+.+.+|.+.+.+|+=
T Consensus 345 kala~GA~~vm~g~~ 359 (475)
T TIGR01303 345 LALAAGASNVMVGSW 359 (475)
T ss_pred HHHHcCCCEEeechh
Confidence 778899999988853
No 267
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=74.15 E-value=86 Score=30.19 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=100.1
Q ss_pred EecCCHHHHHHhhhcCCcEEEE--eCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCH-----------HHHHHHHh
Q 018508 91 LLSFSPTLAEISGLAGYDFVVV--DMEHGP--GGISDALACLHALAATGTPAILRLPESCP-----------TWAKKALD 155 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vil--DlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-----------~~i~~aLd 155 (355)
+-..+++-+..+...|+|-|=| +|+.+. .+...+....+.. .-+..++||..+.+. ..|+.+.+
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERV-TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999755 666663 3455544444432 244567999887642 23677888
Q ss_pred cCCCeEeecCCC-----CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHH
Q 018508 156 LGPQGVMFPMID-----SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAED 230 (355)
Q Consensus 156 aGa~GImvP~Ve-----saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~niee 230 (355)
.|++||++=..+ +.+..++++++++ +....+.||.. +++.-.+.++.
T Consensus 85 ~GadGvV~G~L~~dg~vD~~~~~~Li~~a~-------~~~vTFHRAfD---------------------~~~d~~~al~~ 136 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHVDMPRMRKIMAAAG-------PLAVTFHRAFD---------------------MCANPLNALKQ 136 (248)
T ss_pred cCCCEEEEeeECCCCCcCHHHHHHHHHHhc-------CCceEEechhh---------------------ccCCHHHHHHH
Confidence 999999884432 4566778888774 12223333321 12233456777
Q ss_pred HhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEec
Q 018508 231 IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 231 IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~ 305 (355)
+... |++.|.=- |.. +.-.+=...+.++++.+. +..+..|=...++.++.+.+-|++.+-.+
T Consensus 137 l~~l-G~~rILTS--------Gg~--~~a~~g~~~L~~lv~~a~--~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 137 LADL-GVARILTS--------GQQ--QDAEQGLSLIMELIAASD--GPIIMAGAGVRLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred HHHc-CCCEEECC--------CCC--CCHHHHHHHHHHHHHhcC--CCEEEeCCCCCHHHHHHHHHcCCCEEeeC
Confidence 7776 78876521 211 111222344444444432 32222222334566777778999887544
No 268
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=74.06 E-value=8.1 Score=37.76 Aligned_cols=211 Identities=17% Similarity=0.223 Sum_probs=106.2
Q ss_pred HHHHHH---HcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHH-HhCCCCeEEcCC
Q 018508 75 SLKYRL---QSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP---GGISDALACLHAL-AATGTPAILRLP 143 (355)
Q Consensus 75 ~lk~~L---~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~-~~~g~~~iVRV~ 143 (355)
++|+.| +.+...++.|. ..+-+ .++.+...+...| |.+-.+. ...+.+..+++++ +..+.|+.+=..
T Consensus 4 ~~~~ll~~A~~~~yAV~AfN-~~n~e~~~avi~AAe~~~sPvI-lq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLD 81 (287)
T PF01116_consen 4 NMKELLKKAKEGGYAVPAFN-VYNLETARAVIEAAEELNSPVI-LQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLD 81 (287)
T ss_dssp HHHHHHHHHHHHT-BEEEEE--SSHHHHHHHHHHHHHTTS-EE-EEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEE
T ss_pred cHHHHHHHHHHCCCeEEEEe-eCCHHHHHHHHHHHHHhCCCEE-EEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecc
Confidence 344444 45677788774 44444 3355556777754 4333221 1233444455543 456777777665
Q ss_pred CC-CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCC-CCccccccCCCceEEE
Q 018508 144 ES-CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYG-IDEGYLSNYEEELLIM 216 (355)
Q Consensus 144 ~~-~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g-~~~~y~~~~n~~i~vi 216 (355)
.. +...++++++.|...||+ |.=++.+.-+++++.++.. |.+-- +--...| .......... .-
T Consensus 82 H~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~-----gv~VE-aElG~i~g~ed~~~~~~~----~~ 151 (287)
T PF01116_consen 82 HGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAY-----GVSVE-AELGHIGGKEDGIESEEE----TE 151 (287)
T ss_dssp EE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHT-----T-EEE-EEESBSSSSCTTCSSSTT-----T
T ss_pred cCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhh-----CCEEE-EEeeeeeccCCCcccccc----cc
Confidence 43 467899999999999986 6667777788888888642 11100 0000001 0000000000 00
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC----CCCCCHHH-HHHHHHHHHHHHhCCCce-e-ecccCCch
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL----WDPGHRKV-REMMRVAEKGVLGGGKAY-L-AGFAMPHD 289 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~----~~~~~p~v-~~ai~~iv~aa~a~g~~~-~-g~~~~d~~ 289 (355)
.+.-+| +.+.++++--|||.|-+ ++|.. .....|.+ .+.+++|.++.. +++. + |+-..+.+
T Consensus 152 ~~~TdP---~~a~~Fv~~TgvD~LAv-------aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~--~iPLVlHGgSG~~~e 219 (287)
T PF01116_consen 152 SLYTDP---EEAKEFVEETGVDALAV-------AIGTAHGMYKGGKKPKLDFDRLKEIREAVP--DIPLVLHGGSGLPDE 219 (287)
T ss_dssp TCSSSH---HHHHHHHHHHTTSEEEE--------SSSBSSSBSSSSSTC--HHHHHHHHHHHH--TSEEEESSCTTS-HH
T ss_pred ccccCH---HHHHHHHHHhCCCEEEE-------ecCccccccCCCCCcccCHHHHHHHHHhcC--CCCEEEECCCCCCHH
Confidence 011122 44556664458998544 44421 11012333 234455544442 3331 1 11222347
Q ss_pred hHHHHHHCCCCEEEecchHH
Q 018508 290 APLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 290 ~a~~~~~~G~~~vs~~~D~~ 309 (355)
+.++.++.|+.-+-+++|..
T Consensus 220 ~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 220 QIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHTTEEEEEESHHHH
T ss_pred HHHHHHHcCceEEEEehHHH
Confidence 88999999999999999864
No 269
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=73.92 E-value=58 Score=28.07 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=59.8
Q ss_pred hHHHHHHHcCCcEEEEEEe-cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLL-SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~-~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|... +-+.+... .......+.+....+|.|++|+.....+-.+....++.. ....++++=....+.....+
T Consensus 17 ~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~ 94 (210)
T PRK09935 17 MSIEVLLQKN-SELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQI-QSTVKVLFLSSKSECFYAGR 94 (210)
T ss_pred HHHHHHHhhC-CCceEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh-CCCCcEEEEECCCcHHHHHH
Confidence 3456666532 11222212 233445566667789999999976654433333334321 22344444444455666778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+++.|+++++. +-.+.+++...++.+.
T Consensus 95 ~~~~g~~~~l~-kp~~~~~l~~~i~~~l 121 (210)
T PRK09935 95 AIQAGANGFVS-KCNDQNDIFHAVQMIL 121 (210)
T ss_pred HHHcCCCEEEe-CCCCHHHHHHHHHHHH
Confidence 99999998664 3346777777776653
No 270
>PRK15452 putative protease; Provisional
Probab=73.71 E-value=46 Score=34.59 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHhcCCCeEeecC----------CCCHHHHHHHHHHcCC
Q 018508 142 LPESCPTWAKKALDLGPQGVMFPM----------IDSPEAAKEAVSYCRF 181 (355)
Q Consensus 142 V~~~~~~~i~~aLdaGa~GImvP~----------Vesaeea~~vv~a~~~ 181 (355)
++..+...++.|+++|||.|-+.. .=+.++++++++.++.
T Consensus 8 apag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~ 57 (443)
T PRK15452 8 SPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA 57 (443)
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH
Confidence 455567889999999999999932 2356888888888763
No 271
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=73.66 E-value=91 Score=30.24 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=79.4
Q ss_pred CCCeEEcCCCC-CHHHH----HHHHhcCCCeEee----cCC-----------CCHHHHHHHHHHcCCCCCCCCCCccccc
Q 018508 135 GTPAILRLPES-CPTWA----KKALDLGPQGVMF----PMI-----------DSPEAAKEAVSYCRFPPSGVRGSAHTVV 194 (355)
Q Consensus 135 g~~~iVRV~~~-~~~~i----~~aLdaGa~GImv----P~V-----------esaeea~~vv~a~~~pP~G~Rg~g~~~~ 194 (355)
..++++=+.+. ++..+ +++-+.|+++|-+ |.. ++++.+.+++++++..
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~------------ 166 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA------------ 166 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh------------
Confidence 35677777665 66543 3344568887654 665 5678888888887531
Q ss_pred ccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHh---ccCCccEEEE-----ChhhH--Hh------------hcC
Q 018508 195 RASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIA---AVDGVDCVQM-----GPLDL--SA------------SMG 252 (355)
Q Consensus 195 ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIa---avpgVD~l~i-----Gp~DL--s~------------slG 252 (355)
-.+.|.+-|- + .+.++.+|+ .-.|+|+|.+ |..++ -. .=|
T Consensus 167 ----------------~~~Pv~vKl~-~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg 228 (299)
T cd02940 167 ----------------VKIPVIAKLT-P-NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGG 228 (299)
T ss_pred ----------------cCCCeEEECC-C-CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCc
Confidence 0123444442 1 223444554 2358999874 21121 11 113
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecch
Q 018508 253 YLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 253 ~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
+.+...+|..++.+.++.+... ..+++ +|++ .+.+++.+++..|.+.|.+++=
T Consensus 229 ~sG~a~~p~~l~~v~~~~~~~~-~~ipIig~GGI-~~~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 229 YSGPAVKPIALRAVSQIARAPE-PGLPISGIGGI-ESWEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred ccCCCcchHHHHHHHHHHHhcC-CCCcEEEECCC-CCHHHHHHHHHcCCChheEcee
Confidence 4445556666777776665542 12332 4444 3567777777899998877653
No 272
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=73.65 E-value=84 Score=29.81 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=50.1
Q ss_pred EEEEEEecCCHHHHHHh---hhcCCcEEEEeCCCC-------------CCCHHHHHHHHHHHHhCCCCeEEcCCCCC---
Q 018508 86 LYGLFLLSFSPTLAEIS---GLAGYDFVVVDMEHG-------------PGGISDALACLHALAATGTPAILRLPESC--- 146 (355)
Q Consensus 86 ~~gl~v~~~sp~~~e~a---a~~G~D~vilDlEh~-------------~~~~~~a~~~i~a~~~~g~~~iVRV~~~~--- 146 (355)
.+.+-+...+|+....+ ...++|+|=|.+-.- ..+.+.+.++++++...+.++.|.+....
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~ 148 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPL 148 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcc
Confidence 44555556677644333 234788777765431 13566777888888766788887776532
Q ss_pred -H-HHHHHHHhcCCCeEee
Q 018508 147 -P-TWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 -~-~~i~~aLdaGa~GImv 163 (355)
. ...+++.++|+++|.|
T Consensus 149 ~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHV 167 (231)
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 1 3356778999999977
No 273
>PLN02389 biotin synthase
Probab=73.49 E-value=1.1e+02 Score=31.10 Aligned_cols=197 Identities=16% Similarity=0.034 Sum_probs=101.6
Q ss_pred HhhhcCCcEEEE-----eCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-------
Q 018508 101 ISGLAGYDFVVV-----DMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS------- 168 (355)
Q Consensus 101 ~aa~~G~D~vil-----DlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves------- 168 (355)
.+...|+.-+.+ +.-+-+...+.+.++++.+...+..+.+...-.+.+.++++.++|++.+.+ ..+|
T Consensus 127 ~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~-~LeTs~~~y~~ 205 (379)
T PLN02389 127 RAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNH-NLDTSREYYPN 205 (379)
T ss_pred HHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEe-eecCChHHhCC
Confidence 344567776655 222223456777778887776666666666556677888888999987655 2233
Q ss_pred ------HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHH-HHHHHHhccC-CccEE
Q 018508 169 ------PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGV-KRAEDIAAVD-GVDCV 240 (355)
Q Consensus 169 ------aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av-~nieeIaavp-gVD~l 240 (355)
.++..+.++.++. .|.. -....++-+.||.+=+ +.+..+...+ .+|.+
T Consensus 206 i~~~~s~e~rl~ti~~a~~-----------------~Gi~-------v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v 261 (379)
T PLN02389 206 VITTRSYDDRLETLEAVRE-----------------AGIS-------VCSGGIIGLGEAEEDRVGLLHTLATLPEHPESV 261 (379)
T ss_pred cCCCCCHHHHHHHHHHHHH-----------------cCCe-------EeEEEEECCCCCHHHHHHHHHHHHhcccCCcEE
Confidence 2222222222221 1100 0112455568998643 3443333443 56777
Q ss_pred EEChhhHHhhcCCCCCC-CCHHHHHHHHHHHHHHHh----CCCceeecc-cCCchhHHHHHHCCCCEEEecch-HHHHHH
Q 018508 241 QMGPLDLSASMGYLWDP-GHRKVREMMRVAEKGVLG----GGKAYLAGF-AMPHDAPLEMKSRGYHMVSGAVD-VGLFRS 313 (355)
Q Consensus 241 ~iGp~DLs~slG~~~~~-~~p~v~~ai~~iv~aa~a----~g~~~~g~~-~~d~~~a~~~~~~G~~~vs~~~D-~~ll~~ 313 (355)
.+.+. .--=|.+... ..+...+.+ ++++.+|- +.+.+.++. ....+.....+..|.+.+.+|.= .+--.+
T Consensus 262 ~l~~l--~P~~GTpL~~~~~~s~~e~l-r~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~ 338 (379)
T PLN02389 262 PINAL--VAVKGTPLEDQKPVEIWEMV-RMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNN 338 (379)
T ss_pred ecccc--eecCCCcCCCCCCCCHHHHH-HHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCC
Confidence 76442 1111221110 011122222 23333332 222233332 22345567778899999988864 455566
Q ss_pred HHHHHHHHHHHh
Q 018508 314 AAVEDVARFKMN 325 (355)
Q Consensus 314 ~~~~~~~~~r~~ 325 (355)
...+.++-++..
T Consensus 339 ~~~~d~~~~~~l 350 (379)
T PLN02389 339 DFDADQAMFKEL 350 (379)
T ss_pred ChHHHHHHHHHc
Confidence 677777777774
No 274
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=73.43 E-value=16 Score=37.17 Aligned_cols=199 Identities=16% Similarity=0.083 Sum_probs=87.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHH-HHHHHHHH-----Hh--CCCCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISD-ALACLHAL-----AA--TGTPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~-a~~~i~a~-----~~--~g~~~iVRV~~ 144 (355)
.+.+..|+.|-...|++.+..- +..-+.. ..+.++.++-.--+.+.... ......++ +. .|..-.+--..
T Consensus 80 ~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~-~~~~~~~I~Q~~sg~fGv~~~~l~~a~~iEIKigQGAKpG~GG~Lp~~K 158 (368)
T PF01645_consen 80 EEAKEALAKGANMAGTASNTGEGGELPEER-KAAKDLRIKQIASGRFGVRPEYLKQADMIEIKIGQGAKPGEGGHLPGEK 158 (368)
T ss_dssp HHHHHHHHHHHHHCT-EEEETTT---GGGC-SB-TTSSEEEE-TT-TT--HHHHCC-SEEEEE---TTSTTT--EE-GGG
T ss_pred HHHHHHHHHHHHHhCceEecCCCCCCHHHh-cccCCceEEEcCCCCCCCCHHHhcCCCeEEEEEecCccccCcceechhh
Confidence 4556677766666677776543 2222222 33345445555555443321 11111111 10 11111111111
Q ss_pred CCHHHHHHH--HhcCCCeEe---ecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 145 SCPTWAKKA--LDLGPQGVM---FPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 145 ~~~~~i~~a--LdaGa~GIm---vP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
. +..|.++ +..|.+-|- .|-+.|.|++.++++.+|.. +....|.+-+
T Consensus 159 V-~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~---------------------------~~~~pVgvKl 210 (368)
T PF01645_consen 159 V-TEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELREL---------------------------NPGKPVGVKL 210 (368)
T ss_dssp ---HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH----------------------------TTSEEEEEE
T ss_pred c-hHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhh---------------------------CCCCcEEEEE
Confidence 1 2234333 334555443 34578889998888888642 1122334333
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhh---------HHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc-----eeeccc
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLD---------LSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA-----YLAGFA 285 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~D---------Ls~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~-----~~g~~~ 285 (355)
=.-..++.+..++.-.++|+|.|--.+ +.-..|+| +..++.++.+...+.|.. ++.|=.
T Consensus 211 ~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-------~~~~l~~a~~~L~~~glr~~V~Li~sGgl 283 (368)
T PF01645_consen 211 VAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-------TEYALARAHQALVKNGLRDRVSLIASGGL 283 (368)
T ss_dssp E-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC----------HHHHHHHHHHHHHCTT-CCCSEEEEESS-
T ss_pred CCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-------HHHHHHHHHHHHHHcCCCCceEEEEeCCc
Confidence 223334444444444589999994333 44556654 355666677777666643 222223
Q ss_pred CCchhHHHHHHCCCCEEEecchH
Q 018508 286 MPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 286 ~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
.++.++...+.+|.+.+.++.-.
T Consensus 284 ~t~~dv~kalaLGAD~v~igt~~ 306 (368)
T PF01645_consen 284 RTGDDVAKALALGADAVYIGTAA 306 (368)
T ss_dssp -SHHHHHHHHHCT-SEEE-SHHH
T ss_pred cCHHHHHHHHhcCCCeeEecchh
Confidence 45677778889999999887544
No 275
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.39 E-value=47 Score=32.80 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=42.9
Q ss_pred HHHHhhhcCCcEEEEeCCCCCC-------CH-HHHHHHHHHHH-hCCCCeEEcCCCCC--HHH-HHHHHhcCCCeEee
Q 018508 98 LAEISGLAGYDFVVVDMEHGPG-------GI-SDALACLHALA-ATGTPAILRLPESC--PTW-AKKALDLGPQGVMF 163 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~-------~~-~~a~~~i~a~~-~~g~~~iVRV~~~~--~~~-i~~aLdaGa~GImv 163 (355)
.++.+...|+|+|-|.+-+.+. +. +...+.++++. ....+++|++...- ... .+.+.++|++||.+
T Consensus 119 ~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 119 YARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 4456667899999997754221 11 23456666664 35789999976542 223 45567899999977
No 276
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=73.35 E-value=1.5e+02 Score=32.76 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=92.4
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHH----HHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCC-HHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALAC----LHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDS-PEA 171 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~----i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Ves-aee 171 (355)
..++.+...|.++|.|-.-+. +..+.... ..-++..+...+| |+ .+.-++..|++ |=++.-+- .++
T Consensus 23 ~~l~~~l~~g~~~iqlR~K~~--~~~~~~~~a~~l~~l~~~~~~~lii--nd----~~~la~~~~~d-VHlg~~dl~~~~ 93 (755)
T PRK09517 23 GIVDSAISGGVSVVQLRDKNA--GVEDVRAAAKELKELCDARGVALVV--ND----RLDVAVELGLH-VHIGQGDTPYTQ 93 (755)
T ss_pred HHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHHHHHHHHHHhCCeEEE--eC----hHHHHHHcCCC-eecCCCcCCHHH
Confidence 345677788999999985554 33333332 2333456666664 43 25557778888 77776432 333
Q ss_pred HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc---cCCccEEEEChhhHH
Q 018508 172 AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA---VDGVDCVQMGPLDLS 248 (355)
Q Consensus 172 a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa---vpgVD~l~iGp~DLs 248 (355)
+++.. | ....|++.+.|.+-++.+.+-+. ..|+|.+.|||--=+
T Consensus 94 ~r~~~--------~-------------------------~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T 140 (755)
T PRK09517 94 ARRLL--------P-------------------------AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVAST 140 (755)
T ss_pred HHHhc--------C-------------------------CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCcccc
Confidence 33221 1 12356777888776655433221 125999999995211
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 249 ASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 249 ~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
. --++... +.=.+.++++.+.+.+.++++ +||+ +++.+..+++.|.+++++.+.+.
T Consensus 141 ~--tK~~~~~-~lG~~~l~~~~~~~~~~~iPv~AiGGI--~~~~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 141 A--TKPDAPP-ALGVDGIAEIAAVAQDHGIASVAIGGV--GLRNAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred C--CCCCCCC-CCCHHHHHHHHHhcCcCCCCEEEECCC--CHHHHHHHHHcCCCEEEEehHhh
Confidence 1 1111110 001233444444443223553 3333 67888999999999998887664
No 277
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.25 E-value=89 Score=29.95 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=71.8
Q ss_pred CchHHHHHHHcC--CcEEEEEEecC--CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEc---CCC
Q 018508 72 SPESLKYRLQSN--ETLYGLFLLSF--SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILR---LPE 144 (355)
Q Consensus 72 ~~n~lk~~L~~G--~~~~gl~v~~~--sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVR---V~~ 144 (355)
....+++..+.. +..+..|+... +...++.+..+|.|+|-+=. ...+.+.+...++.++..|..+.+= ...
T Consensus 57 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~--~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~ 134 (266)
T cd07944 57 DDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAF--HKHEFDEALPLIKAIKEKGYEVFFNLMAISG 134 (266)
T ss_pred CHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEec--ccccHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 344555555443 57788887654 46778888899999854432 2235677777887777666543221 112
Q ss_pred CCHH----HHHHHHhcCCCeEeecCC---CCHHHHHHHHHHcC
Q 018508 145 SCPT----WAKKALDLGPQGVMFPMI---DSPEAAKEAVSYCR 180 (355)
Q Consensus 145 ~~~~----~i~~aLdaGa~GImvP~V---esaeea~~vv~a~~ 180 (355)
.++. .++++.++|++.|.++-. -+|+++.++++.++
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 2333 356788899999998864 68999999999886
No 278
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=72.70 E-value=1.1e+02 Score=30.86 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHHH-hCC-CCeEEcCCCC
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLHALA-ATG-TPAILRLPES 145 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~~-~~g-~~~iVRV~~~ 145 (355)
.+-++-+++...++.|. ..+.+. ++.+-..+...| |.+-.+. ...+.+..+++.+. ... .++.+=....
T Consensus 6 ~iL~~A~~~~yAV~AfN-~~n~e~~~aii~AAEe~~sPvI-lq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg 83 (347)
T TIGR01521 6 QLLDHAAEFGYGVPAFN-VNNMEQMRAIMEAADKTDSPVI-LQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHG 83 (347)
T ss_pred HHHHHHHHcCceEEEEe-eCCHHHHHHHHHHHHHhCCCEE-EECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 34444456677888774 445443 345555667744 4443331 34566667776543 443 6777777554
Q ss_pred -CHHHHHHHHhcCCCeEee------------cCCCCHHHHHHHHHHcCC
Q 018508 146 -CPTWAKKALDLGPQGVMF------------PMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv------------P~Vesaeea~~vv~a~~~ 181 (355)
+...+.+++++|...||+ |.=++.+..+++++.++.
T Consensus 84 ~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 84 NSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHA 132 (347)
T ss_pred CCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999997 555577778888888863
No 279
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=72.64 E-value=44 Score=26.88 Aligned_cols=84 Identities=19% Similarity=0.211 Sum_probs=52.2
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hC-CCCeEEcCCCCCHHHH
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-AT-GTPAILRLPESCPTWA 150 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~-g~~~iVRV~~~~~~~i 150 (355)
+...++....| .-.++....++...+.+.-..++.+++...+ .+.-...+..++ .. ....++|+++ +...
T Consensus 31 ~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~----d~~n~~~~~~~r~~~~~~~ii~~~~~--~~~~ 102 (116)
T PF02254_consen 31 PERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTDD----DEENLLIALLARELNPDIRIIARVND--PENA 102 (116)
T ss_dssp HHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESSS----HHHHHHHHHHHHHHTTTSEEEEEESS--HHHH
T ss_pred cHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccCC----HHHHHHHHHHHHHHCCCCeEEEEECC--HHHH
Confidence 44455555555 2244455677888888888888888888773 222223333333 23 3678899886 4455
Q ss_pred HHHHhcCCCeEeec
Q 018508 151 KKALDLGPQGVMFP 164 (355)
Q Consensus 151 ~~aLdaGa~GImvP 164 (355)
..+-.+|++.|+.|
T Consensus 103 ~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 103 ELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHTT-SEEEEH
T ss_pred HHHHHCCcCEEECc
Confidence 66667999999988
No 280
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=72.64 E-value=30 Score=33.27 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=49.1
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeE---------------EcCCCCCHH-------HHHHHHhcC
Q 018508 100 EISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAI---------------LRLPESCPT-------WAKKALDLG 157 (355)
Q Consensus 100 e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~i---------------VRV~~~~~~-------~i~~aLdaG 157 (355)
+.+..+|++.|-| |++ ....+.|+++...+.+++ -|+-+.... ..++..++|
T Consensus 98 r~~~~aGa~aVki--Ed~----~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AG 171 (254)
T cd06557 98 RLMKEAGADAVKL--EGG----AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAG 171 (254)
T ss_pred HHHHHhCCeEEEE--cCc----HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCC
Confidence 3344489988775 444 345566666666665543 122222221 234456899
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCCC
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~p 182 (355)
|++|++|.+.+ +.++++.+.+.-|
T Consensus 172 A~~i~lE~v~~-~~~~~i~~~v~iP 195 (254)
T cd06557 172 AFALVLECVPA-ELAKEITEALSIP 195 (254)
T ss_pred CCEEEEcCCCH-HHHHHHHHhCCCC
Confidence 99999999964 8999999998755
No 281
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=72.54 E-value=1e+02 Score=30.36 Aligned_cols=88 Identities=14% Similarity=0.194 Sum_probs=60.0
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEE------------eCCCCCCCHHHHHHHHHHH-HhCCCCe
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVV------------DMEHGPGGISDALACLHAL-AATGTPA 138 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vil------------DlEh~~~~~~~a~~~i~a~-~~~g~~~ 138 (355)
....||+.++.+.+.+- .+.-+|-.+..+...||..+++ |++.. ..+++...++.+ +....|+
T Consensus 6 ~~~~fR~l~~~~~~~~~--pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~--t~~e~~~~vrrI~~a~~lPv 81 (289)
T COG2513 6 PGAAFRALHASGDPLVL--PGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGIT--TLDEVLADARRITDAVDLPV 81 (289)
T ss_pred HHHHHHHHHhCCCCEEe--cCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccc--cHHHHHHHHHHHHhhcCCce
Confidence 45789999999887432 2344888889999999999886 33332 255555555443 4567888
Q ss_pred EEcCCCC--CH----HHHHHHHhcCCCeEee
Q 018508 139 ILRLPES--CP----TWAKKALDLGPQGVMF 163 (355)
Q Consensus 139 iVRV~~~--~~----~~i~~aLdaGa~GImv 163 (355)
+|=+... ++ ..++.+.++|+.||-+
T Consensus 82 ~vD~dtGfG~~~nvartV~~~~~aG~agi~i 112 (289)
T COG2513 82 LVDIDTGFGEALNVARTVRELEQAGAAGIHI 112 (289)
T ss_pred EEeccCCCCcHHHHHHHHHHHHHcCcceeee
Confidence 8877543 22 2467889999998865
No 282
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.42 E-value=19 Score=34.73 Aligned_cols=101 Identities=28% Similarity=0.389 Sum_probs=63.2
Q ss_pred CcEEEEeCCCCC--CCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCC
Q 018508 107 YDFVVVDMEHGP--GGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPP 183 (355)
Q Consensus 107 ~D~vilDlEh~~--~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP 183 (355)
.|.|+|--+|-. .+.+.+ +..++. .+....|=|.-.+..++..++.+|+|.|++-.+ ++++++++++.++..|
T Consensus 151 ~d~ilikdnHi~~~g~~~~~---v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~~ 226 (269)
T cd01568 151 SDAVLIKDNHIAAAGGITEA---VKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGLP 226 (269)
T ss_pred cceeeecHhHHHHhCCHHHH---HHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccCC
Confidence 488888888852 122222 333322 221223334444677888999999999999776 6799999888764210
Q ss_pred CCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHH--HHHHHHHhccCCccEEEECh
Q 018508 184 SGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEG--VKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 184 ~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~a--v~nieeIaavpgVD~l~iGp 244 (355)
++ .||-..| .+|+.++++. |+|+|.+|.
T Consensus 227 ----------------------------~i----~i~asGGIt~~ni~~~a~~-Gad~Isvga 256 (269)
T cd01568 227 ----------------------------RV----LLEASGGITLENIRAYAET-GVDVISTGA 256 (269)
T ss_pred ----------------------------Ce----EEEEECCCCHHHHHHHHHc-CCCEEEEcH
Confidence 11 1333333 5889999874 899999874
No 283
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=72.23 E-value=7.9 Score=37.39 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=61.2
Q ss_pred CcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCC
Q 018508 107 YDFVVVDMEHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPS 184 (355)
Q Consensus 107 ~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~ 184 (355)
.|.++|--+|-. .+...+...++.. .+....|=|.-.+..++.+++.+|+|.|++-.+ ++++++++++.++..
T Consensus 152 ~d~vlikdnHi~~~g~i~~~v~~~r~~--~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~~~-- 226 (268)
T cd01572 152 SDAVLIKDNHIAAAGSITEAVRRARAA--APFTLKIEVEVETLEQLKEALEAGADIIMLDNM-SPEELREAVALLKGR-- 226 (268)
T ss_pred cceeeeehHHHHHhCCHHHHHHHHHHh--CCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcCCC--
Confidence 367777777742 1222222222221 221222223333467788999999999999887 589999999876420
Q ss_pred CCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEECh
Q 018508 185 GVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 185 G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp 244 (355)
-.+..+--| -.+|+.++++. |+|+|.+|.
T Consensus 227 --------------------------ipi~AiGGI----~~~ni~~~a~~-Gvd~Iav~s 255 (268)
T cd01572 227 --------------------------VLLEASGGI----TLENIRAYAET-GVDYISVGA 255 (268)
T ss_pred --------------------------CcEEEECCC----CHHHHHHHHHc-CCCEEEEEe
Confidence 011112123 15788898874 899999886
No 284
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=72.15 E-value=75 Score=30.57 Aligned_cols=102 Identities=16% Similarity=0.292 Sum_probs=62.3
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHH-HhCCCC-eEEc
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHAL-AATGTP-AILR 141 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~-~~~g~~-~iVR 141 (355)
..||++.++|++. ...+..+...+..+..+|+|.|..- .++. ..+.+++...++++ +..+.+ +++=
T Consensus 2 ~~lr~l~~~~~~l--~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD 79 (254)
T cd06557 2 PDLQKMKKAGEKI--VMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVAD 79 (254)
T ss_pred hhHHHHHhCCCcE--EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEe
Confidence 4588888888875 4445678888899999999998753 1222 24566666666654 344555 4443
Q ss_pred CCCC----CHHH----HHHHHh-cCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 142 LPES----CPTW----AKKALD-LGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 142 V~~~----~~~~----i~~aLd-aGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
++-. ++.. ..+++. +|++||.+ |.-++....++++.
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVki---Ed~~~~~~~I~al~ 124 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKL---EGGAEVAETIRALV 124 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEE---cCcHHHHHHHHHHH
Confidence 4311 2332 355677 99999987 44444444444443
No 285
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=72.13 E-value=59 Score=28.82 Aligned_cols=81 Identities=16% Similarity=0.070 Sum_probs=47.4
Q ss_pred cEEEEEEecCCHHHHHHhhhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCH----HHHHHHHhcCC-
Q 018508 85 TLYGLFLLSFSPTLAEISGLAG-YDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCP----TWAKKALDLGP- 158 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G-~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~----~~i~~aLdaGa- 158 (355)
..+.+..++..++.++.+...| .|+|.+|+++.. +...... +.+.... ..++.+.+.|.
T Consensus 91 ~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~---~~~~~~~------------g~~~~~~~~~~~~i~~l~~~gi~ 155 (191)
T TIGR02495 91 FEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPP---EKYPELY------------GLEKNGSNNILKSLEILLRSGIP 155 (191)
T ss_pred CeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCCh---HHHHHHH------------CCCCchHHHHHHHHHHHHHcCCC
Confidence 3455555666777777777777 488888888632 2111111 1111111 12344445554
Q ss_pred ---CeEeecCCCCHHHHHHHHHHcC
Q 018508 159 ---QGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 159 ---~GImvP~Vesaeea~~vv~a~~ 180 (355)
..++.|...+.++++++.+.++
T Consensus 156 ~~i~~~v~~~~~~~~ei~~~~~~l~ 180 (191)
T TIGR02495 156 FELRTTVHRGFLDEEDLAEIATRIK 180 (191)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3467788888778998888875
No 286
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=71.97 E-value=96 Score=29.76 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh----CCCCeEEcCCCCCHHHHHHHH
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA----TGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~----~g~~~iVRV~~~~~~~i~~aL 154 (355)
||.|+...+.+.+.. .-..++.+..+|+|.|=+=. |..-++..+.++.+.. .....+.|. ....+.+++
T Consensus 8 LRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~---~~~di~~a~ 81 (262)
T cd07948 8 LREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRC---HMDDARIAV 81 (262)
T ss_pred CCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecC---CHHHHHHHH
Confidence 566776666555443 34567788889999875542 4333333433333321 122223443 366799999
Q ss_pred hcCCCeEeecC
Q 018508 155 DLGPQGVMFPM 165 (355)
Q Consensus 155 daGa~GImvP~ 165 (355)
+.|++.|.+..
T Consensus 82 ~~g~~~i~i~~ 92 (262)
T cd07948 82 ETGVDGVDLVF 92 (262)
T ss_pred HcCcCEEEEEE
Confidence 99999766653
No 287
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=71.42 E-value=54 Score=31.65 Aligned_cols=91 Identities=16% Similarity=0.087 Sum_probs=62.3
Q ss_pred chHHHHHHHc-CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCC-----HHHHHHHHHHHH-hCCCCeEEcCCCC
Q 018508 73 PESLKYRLQS-NETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGG-----ISDALACLHALA-ATGTPAILRLPES 145 (355)
Q Consensus 73 ~n~lk~~L~~-G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~-----~~~a~~~i~a~~-~~g~~~iVRV~~~ 145 (355)
...+.+.+++ |-..+-+..|..+++.++.++...-.||.+=-.-+... .+...+++..++ ....++.|-..-.
T Consensus 133 ~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~ 212 (263)
T CHL00200 133 SDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGIS 212 (263)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 4566667654 55666666677777888887776555777644444322 244555565554 4577888877666
Q ss_pred CHHHHHHHHhcCCCeEee
Q 018508 146 CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImv 163 (355)
++++++++.+.|||||++
T Consensus 213 ~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 213 TSEQIKQIKGWNINGIVI 230 (263)
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 799999999999999986
No 288
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=71.30 E-value=73 Score=28.09 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=56.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP--GGISDALACLHALAATGTPAILRLPESCPTWAK 151 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~ 151 (355)
..+++.|+.... .+....+.....+.+....+|.|++|++-.. .+--.....++.. ....++++=....+.....
T Consensus 14 ~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~-~~~~pii~ls~~~~~~~~~ 90 (227)
T TIGR03787 14 ENYADALKRQGY--QVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSL-SATLPIIFLTARDSDFDTV 90 (227)
T ss_pred HHHHHHHHHCCc--EEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhc-CCCCCEEEEECCCCHHHHH
Confidence 346667754222 2222223344556666777999999987653 2222333333321 1234444433444566678
Q ss_pred HHHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 152 KALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 152 ~aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
.++.+|+++++. +-.+.+++...++.+
T Consensus 91 ~~~~~Ga~~~l~-kp~~~~~l~~~i~~~ 117 (227)
T TIGR03787 91 SGLRLGADDYLT-KDISLPHLLARITAL 117 (227)
T ss_pred HHHhcCCCEEEE-CCCCHHHHHHHHHHH
Confidence 899999998764 444566666555443
No 289
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=71.20 E-value=21 Score=31.29 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=46.0
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCC-C--------CCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHh
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDME-H--------GPGGISDALACLHALAATGTPAILRLPESCPTWAKKALD 155 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlE-h--------~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLd 155 (355)
..+|+- ..++..++.+...|+|+|++..= . .+...+.++.... ....++ +=..+.+...+..+++
T Consensus 96 ~~~g~~--~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pv-~a~GGi~~~~i~~~~~ 169 (196)
T cd00564 96 LIIGVS--THSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAE---LVEIPV-VAIGGITPENAAEVLA 169 (196)
T ss_pred CEEEee--CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHH---hCCCCE-EEECCCCHHHHHHHHH
Confidence 455554 35777888888899999998632 1 1223333333322 123333 3345667788999999
Q ss_pred cCCCeEeec
Q 018508 156 LGPQGVMFP 164 (355)
Q Consensus 156 aGa~GImvP 164 (355)
+|++||.+=
T Consensus 170 ~Ga~~i~~g 178 (196)
T cd00564 170 AGADGVAVI 178 (196)
T ss_pred cCCCEEEEe
Confidence 999998653
No 290
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.73 E-value=43 Score=32.58 Aligned_cols=75 Identities=13% Similarity=-0.032 Sum_probs=53.4
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-CCCCHHHHHHHHhcCCCeEeecC
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-PESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
.-+.+-..+-+.++.++.+|+|.|.+|- .+.+++++.+..+......+.+=. .+.++..+......|+|.|.+=.
T Consensus 183 ~~I~VEv~tleea~~A~~~GaDiI~LDn----~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 183 AKIEIECESLEEAKNAMNAGADIVMCDN----MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred ceEEEEeCCHHHHHHHHHcCCCEEEECC----CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 3466677899999999999999999886 466777777765432111222222 23568889999999999998744
No 291
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=70.70 E-value=35 Score=32.73 Aligned_cols=96 Identities=8% Similarity=0.023 Sum_probs=63.9
Q ss_pred HHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCC-----CCeEEcCCCCC--HHHHHH
Q 018508 80 LQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG-----TPAILRLPESC--PTWAKK 152 (355)
Q Consensus 80 L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g-----~~~iVRV~~~~--~~~i~~ 152 (355)
.+......-.-++.+++..+..+...|++.|++=+= .+.+++++.+++++..+ ..+.+|-+.-. +..++
T Consensus 65 ~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v---~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~- 140 (256)
T PRK10558 65 LKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFV---ETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFA- 140 (256)
T ss_pred HhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCc---CCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHH-
Confidence 343444445566788999999999999999987443 35688898888876432 12223333221 11122
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~ 181 (355)
.+..+-.++|||||++-+..+.+.+..
T Consensus 141 --~an~~~~vi~~IEt~~av~ni~eI~av 167 (256)
T PRK10558 141 --QSNKNITVLVQIESQQGVDNVDAIAAT 167 (256)
T ss_pred --HhccccEEEEEECCHHHHHHHHHHhCC
Confidence 223456799999999999999998875
No 292
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=70.51 E-value=73 Score=27.83 Aligned_cols=101 Identities=16% Similarity=0.040 Sum_probs=58.3
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+++.|......+. ...+.....+.+....+|.+++|+.-...+--+....++. ....++++-....+......+
T Consensus 14 ~~l~~~L~~~~~~v~--~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~--~~~~~ii~ls~~~~~~~~~~a 89 (223)
T PRK11517 14 EWVTQGLSEAGYVID--AVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRT--AKQTPVICLTARDSVDDRVRG 89 (223)
T ss_pred HHHHHHHHHCCCEEE--EECCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHc--CCCCCEEEEECCCCHHHHHHH
Confidence 345666654332222 2223344556666778999999987654443333333332 234455554455566778899
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+++|+++++.- --+.+++...++.+
T Consensus 90 ~~~Ga~~~l~k-p~~~~~l~~~i~~~ 114 (223)
T PRK11517 90 LDSGANDYLVK-PFSFSELLARVRAQ 114 (223)
T ss_pred HhcCCCEEEEC-CCCHHHHHHHHHHH
Confidence 99999986543 34567766555543
No 293
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=70.50 E-value=90 Score=28.86 Aligned_cols=87 Identities=13% Similarity=-0.004 Sum_probs=58.6
Q ss_pred EecCCHHHHHHhhhcCCcEEEEeC-CCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH-hcCCCeEeecCC
Q 018508 91 LLSFSPTLAEISGLAGYDFVVVDM-EHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKAL-DLGPQGVMFPMI 166 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vilDl-Eh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL-daGa~GImvP~V 166 (355)
+.+.+++.++.+..+|+|++=|=. ++++ .+.++++.+...+...-..+.|=++. ++..+..++ +.+.+.|.+=--
T Consensus 8 CGi~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~-~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNA-SDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCC-CHHHHHHHHHhcCCCEEEECCC
Confidence 356789999999999999975555 5555 56788888877653222333333333 455565554 578899988767
Q ss_pred CCHHHHHHHHHH
Q 018508 167 DSPEAAKEAVSY 178 (355)
Q Consensus 167 esaeea~~vv~a 178 (355)
++++.++.+.+.
T Consensus 87 e~~~~~~~l~~~ 98 (210)
T PRK01222 87 ETPEFCRQLKRR 98 (210)
T ss_pred CCHHHHHHHHhh
Confidence 788877766543
No 294
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=70.24 E-value=92 Score=30.60 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCeEee--------------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCc
Q 018508 147 PTWAKKALDLGPQGVMF--------------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEE 212 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv--------------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~ 212 (355)
..+.+-+-++||-+||+ -..+++++++++.+.+.-|
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iP------------------------------ 67 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIP------------------------------ 67 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCC------------------------------
Confidence 44555566667666665 4567788888887776544
Q ss_pred eEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhC-CCceeecccCCchhH
Q 018508 213 LLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGG-GKAYLAGFAMPHDAP 291 (355)
Q Consensus 213 i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~-g~~~~g~~~~d~~~a 291 (355)
|+..+=--- +..++++.+. |+|.| | .+.-. .| .+.++...|.+ +..+. .=+.+.+++
T Consensus 68 --VIGi~K~~~-~~Ea~~L~ea-GvDiI-----D--aT~r~-----rP-----~~~~~~~iK~~~~~l~M-AD~stleEa 125 (283)
T cd04727 68 --VMAKVRIGH-FVEAQILEAL-GVDMI-----D--ESEVL-----TP-----ADEEHHIDKHKFKVPFV-CGARNLGEA 125 (283)
T ss_pred --eEEeeehhH-HHHHHHHHHc-CCCEE-----e--ccCCC-----Cc-----HHHHHHHHHHHcCCcEE-ccCCCHHHH
Confidence 222221100 7778888764 88987 4 11111 12 13344444443 33332 225677888
Q ss_pred HHHHHCCCCEEEec
Q 018508 292 LEMKSRGYHMVSGA 305 (355)
Q Consensus 292 ~~~~~~G~~~vs~~ 305 (355)
.+..++||+++...
T Consensus 126 l~a~~~Gad~I~TT 139 (283)
T cd04727 126 LRRISEGAAMIRTK 139 (283)
T ss_pred HHHHHCCCCEEEec
Confidence 89999999998543
No 295
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.20 E-value=27 Score=32.65 Aligned_cols=191 Identities=19% Similarity=0.171 Sum_probs=91.5
Q ss_pred EecCCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHH-HhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC--
Q 018508 91 LLSFSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHAL-AATGTPAILRLPESCPTWAKKALDLGPQGVMFPM-- 165 (355)
Q Consensus 91 v~~~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~-- 165 (355)
+...+|. .++.....|+|. .++||.-+-.....-.+.+..+ +..+.++.|==.-.+.+.++++++.|++.|++--
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~ 105 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEA 105 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHH
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHH
Confidence 4566775 556677889988 5889864433444444444443 3445444432222256789999999999988753
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 166 IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 166 Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
+++++-++++.+.. .+ .|=.-.--.|. | .+........ -..+.-.+.++.+.+. |+..+.+ .
T Consensus 106 ~~~~~~l~~~~~~~--g~--~~ivvslD~~~---g---~~v~~~gw~~--~~~~~~~~~~~~~~~~----g~~~ii~--t 167 (229)
T PF00977_consen 106 LEDPELLEELAERY--GS--QRIVVSLDARD---G---YKVATNGWQE--SSGIDLEEFAKRLEEL----GAGEIIL--T 167 (229)
T ss_dssp HHCCHHHHHHHHHH--GG--GGEEEEEEEEE---T---EEEEETTTTE--EEEEEHHHHHHHHHHT----T-SEEEE--E
T ss_pred hhchhHHHHHHHHc--Cc--ccEEEEEEeee---c---eEEEecCccc--cCCcCHHHHHHHHHhc----CCcEEEE--e
Confidence 24455555555432 10 00000000000 0 0000000000 1122223333333332 4555554 2
Q ss_pred hHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecc
Q 018508 246 DLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 246 DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
++...|....|.+ ++++++.... ..-....||+ .+.++...+.+.|++.+.+|+
T Consensus 168 ----di~~dGt~~G~d~-~~~~~l~~~~-~~~viasGGv-~~~~Dl~~l~~~G~~gvivg~ 221 (229)
T PF00977_consen 168 ----DIDRDGTMQGPDL-ELLKQLAEAV-NIPVIASGGV-RSLEDLRELKKAGIDGVIVGS 221 (229)
T ss_dssp ----ETTTTTTSSS--H-HHHHHHHHHH-SSEEEEESS---SHHHHHHHHHTTECEEEESH
T ss_pred ----eccccCCcCCCCH-HHHHHHHHHc-CCCEEEecCC-CCHHHHHHHHHCCCcEEEEeh
Confidence 2333344445554 4566665555 2222234444 567888888999999998874
No 296
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.16 E-value=78 Score=32.09 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHHHHHhcCCCe--EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE--EEccHHH
Q 018508 149 WAKKALDLGPQG--VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC--QVESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~G--ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~--mIET~~a 224 (355)
+|.++-++|++- |-+|-.+.++.++.+.+.+. +.+++ ...-..|
T Consensus 47 Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~--------------------------------iPlvADIHFd~~lA 94 (360)
T PRK00366 47 QIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLP--------------------------------VPLVADIHFDYRLA 94 (360)
T ss_pred HHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCC--------------------------------CCEEEecCCCHHHH
Confidence 456666777764 44565555555555555442 22333 3355566
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc-cCC-----------c----
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF-AMP-----------H---- 288 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~-~~d-----------~---- 288 (355)
++.++. |+|.|=|-|+-+ . ...+-+..++++|+++++++--|+ +++ +
T Consensus 95 l~a~~~-----G~~~iRINPGNi----------g--~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~ea 157 (360)
T PRK00366 95 LAAAEA-----GADALRINPGNI----------G--KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEA 157 (360)
T ss_pred HHHHHh-----CCCEEEECCCCC----------C--chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHH
Confidence 665553 788886666533 1 224567888899999998752222 221 1
Q ss_pred ------hhHHHHHHCCCCEEEec---chHHHHHHHHHHHHHH
Q 018508 289 ------DAPLEMKSRGYHMVSGA---VDVGLFRSAAVEDVAR 321 (355)
Q Consensus 289 ------~~a~~~~~~G~~~vs~~---~D~~ll~~~~~~~~~~ 321 (355)
+.++.+-++||+-+.++ +|+..+-++++...+.
T Consensus 158 mveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 158 LVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR 199 (360)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc
Confidence 33556778999876554 7888888888665544
No 297
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=70.13 E-value=37 Score=32.88 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeE---------------EcCCCCCHH----H---HHHHHhcC
Q 018508 100 EISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAI---------------LRLPESCPT----W---AKKALDLG 157 (355)
Q Consensus 100 e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~i---------------VRV~~~~~~----~---i~~aLdaG 157 (355)
+.+..+|++.|-| |++ +...+.|+++...|.+++ -|+-+.... . .++..++|
T Consensus 101 r~~~~aGa~aVki--Edg----~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAG 174 (264)
T PRK00311 101 RLMKEAGAHAVKL--EGG----EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAG 174 (264)
T ss_pred HHHHHhCCeEEEE--cCc----HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCC
Confidence 3444489988765 454 244556666666666553 223222222 1 24456899
Q ss_pred CCeEeecCCCCHHHHHHHHHHcCCC
Q 018508 158 PQGVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 158 a~GImvP~Vesaeea~~vv~a~~~p 182 (355)
|++|+++.+.+ +.++++.+.+.-|
T Consensus 175 A~~i~lE~v~~-~~~~~i~~~l~iP 198 (264)
T PRK00311 175 AFALVLECVPA-ELAKEITEALSIP 198 (264)
T ss_pred CCEEEEcCCCH-HHHHHHHHhCCCC
Confidence 99999999955 8999999998755
No 298
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=69.94 E-value=1.2e+02 Score=29.93 Aligned_cols=212 Identities=18% Similarity=0.246 Sum_probs=118.7
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC---CC-HHHHHHHHHHH-HhCCCCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP---GG-ISDALACLHAL-AATGTPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~---~~-~~~a~~~i~a~-~~~g~~~iVRV~~ 144 (355)
..+-+..+.++..++-| |+.+-+ .++.+...... |||..-.+. .. ...+.+++..+ ...+.|+..-...
T Consensus 7 ~~ll~~Ake~~yAvpAf-N~~nlE~~~AileaA~e~~sP-vIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDH 84 (286)
T COG0191 7 KELLDKAKENGYAVPAF-NINNLETLQAILEAAEEEKSP-VIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDH 84 (286)
T ss_pred HHHHHHHHHcCCceeee-eecCHHHHHHHHHHHHHhCCC-EEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44555666788888888 455544 44666677777 555555553 23 45666777654 5678888877766
Q ss_pred C-CHHHHHHHHhcCCCeEe-----ecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE
Q 018508 145 S-CPTWAKKALDLGPQGVM-----FPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ 218 (355)
Q Consensus 145 ~-~~~~i~~aLdaGa~GIm-----vP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m 218 (355)
. +...+.++++.|...|| +|.=++.+..+++++.|+.. | ..- -.-.|.. -...++ ...
T Consensus 85 g~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~--g---vsV----EaElG~~---GG~Edg----~~~ 148 (286)
T COG0191 85 GASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAY--G---VSV----EAELGTL---GGEEDG----VVL 148 (286)
T ss_pred CCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHc--C---CcE----EEEeccc---cCccCC----ccc
Confidence 5 56789999999997777 58888888899999988642 1 100 0001100 000011 111
Q ss_pred EccHHHHHHHHH---HhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce--eecccCCchhHH
Q 018508 219 VESEEGVKRAED---IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY--LAGFAMPHDAPL 292 (355)
Q Consensus 219 IET~~av~niee---IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~ 292 (355)
-+.++=+.+.++ +..--|+|.|-++-+-- =|. +.+..|.+ ...++++-+... .+. =|+-..+.++.+
T Consensus 149 ~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~---HG~-Yk~~~p~L~~~~L~~i~~~~~---~PlVlHGgSGip~~eI~ 221 (286)
T COG0191 149 YTDPADLTDPEEALEFVERTGIDALAAAIGNV---HGV-YKPGNPKLDFDRLKEIQEAVS---LPLVLHGGSGIPDEEIR 221 (286)
T ss_pred ccchhhhCCHHHHHHHHhccCcceeeeecccc---ccC-CCCCCCCCCHHHHHHHHHHhC---CCEEEeCCCCCCHHHHH
Confidence 122333334443 44444688865533211 121 12222322 122333333332 331 122233457899
Q ss_pred HHHHCCCCEEEecchHHH
Q 018508 293 EMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 293 ~~~~~G~~~vs~~~D~~l 310 (355)
+.+++|..-+.+.+|..+
T Consensus 222 ~aI~~GV~KvNi~Td~~~ 239 (286)
T COG0191 222 EAIKLGVAKVNIDTDLQL 239 (286)
T ss_pred HHHHhCceEEeeCcHHHH
Confidence 999999999999999754
No 299
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=22 Score=35.70 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC---C------chhHHHHHHCCCCEEEec
Q 018508 235 DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM---P------HDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 235 pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~---d------~~~a~~~~~~G~~~vs~~ 305 (355)
.|+|.|++|-.+++.-... .++.+++ +.+.+.-|+++|+++...+.. + ......+.++|.+.|.++
T Consensus 25 ~GADaVY~G~~~~~~R~~a-~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRA-LNFSVED----LAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred cCCCEEEeCCccccccccc-ccCCHHH----HHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc
Confidence 3799999998888766554 3455555 455567888899874322211 1 134667889999999776
Q ss_pred chHHHHHHHH
Q 018508 306 VDVGLFRSAA 315 (355)
Q Consensus 306 ~D~~ll~~~~ 315 (355)
|..++.-..
T Consensus 100 -Dpg~i~l~~ 108 (347)
T COG0826 100 -DPGLIMLAR 108 (347)
T ss_pred -CHHHHHHHH
Confidence 666554443
No 300
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.38 E-value=37 Score=35.88 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCe--EE--cCCCC-CHH----HHHHHHhcCCCeEeecCC
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPA--IL--RLPES-CPT----WAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~--iV--RV~~~-~~~----~i~~aLdaGa~GImvP~V 166 (355)
...+++++.+|.|++ -.=++..+.+.+...+.+++..|..+ .| -+... +.. .++++.++|++.|.++-.
T Consensus 100 ~~fv~~a~~~Gidi~--RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDt 177 (499)
T PRK12330 100 DRFVEKSAENGMDVF--RVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDM 177 (499)
T ss_pred HHHHHHHHHcCCCEE--EEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 347889999999983 22333445566666676666555433 22 22222 233 357788999999888754
Q ss_pred ---CCHHHHHHHHHHcC
Q 018508 167 ---DSPEAAKEAVSYCR 180 (355)
Q Consensus 167 ---esaeea~~vv~a~~ 180 (355)
-+|+++.+++++++
T Consensus 178 aGll~P~~~~~LV~~Lk 194 (499)
T PRK12330 178 AALLKPQPAYDIVKGIK 194 (499)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 68999999999986
No 301
>PLN02561 triosephosphate isomerase
Probab=69.29 E-value=58 Score=31.35 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=75.1
Q ss_pred HHHHhhhcCCcEEEEeCCC-CC-C--CHHHHHHHHHHHHhCCCCeEEcCCCCCH------------HHHHHHHhc-C-CC
Q 018508 98 LAEISGLAGYDFVVVDMEH-GP-G--GISDALACLHALAATGTPAILRLPESCP------------TWAKKALDL-G-PQ 159 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh-~~-~--~~~~a~~~i~a~~~~g~~~iVRV~~~~~------------~~i~~aLda-G-a~ 159 (355)
.+++++..|+++++|---. -- + .-+....-++++...|..|+|=|..... .+++.+|+. . ..
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~ 159 (253)
T PLN02561 80 SAEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWA 159 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4588889999999975321 11 1 2234445566667789999998887521 234444432 0 12
Q ss_pred eEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHH
Q 018508 160 GVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 160 GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
-+++ .++-|+++++.+.+.+|..- + ..||.. ...+-.++-+.-| --+|+.
T Consensus 160 ~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l---~---------~~~~~~----~a~~i~ILYGGSV----~~~N~~ 219 (253)
T PLN02561 160 NVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWL---H---------KNVSPE----VAATTRIIYGGSV----TGANCK 219 (253)
T ss_pred ceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHH---H---------Hhhccc----ccccceEEEeCCc----CHHHHH
Confidence 2455 46678888888777765210 0 001100 0001122333333 236888
Q ss_pred HHhccCCccEEEEChhhH
Q 018508 230 DIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DL 247 (355)
+|+..+++||+++|.+=|
T Consensus 220 ~l~~~~~iDG~LVG~ASL 237 (253)
T PLN02561 220 ELAAQPDVDGFLVGGASL 237 (253)
T ss_pred HHhcCCCCCeEEEehHhh
Confidence 999999999999998755
No 302
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.11 E-value=71 Score=30.31 Aligned_cols=67 Identities=19% Similarity=0.017 Sum_probs=42.7
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC-CCCeEEcCCCCC-HHHHHHHHhcCCCeEeec
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT-GTPAILRLPESC-PTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~-g~~~iVRV~~~~-~~~i~~aLdaGa~GImvP 164 (355)
..++.+..+|+|+|.+|.-.... .....+.|+.+... +..|++=.++.. .....+.+..|+++||+-
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~-~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGK-PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCC-chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 66778889999999998544321 11223445444332 224455556654 466888888999999973
No 303
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=69.05 E-value=1.3e+02 Score=30.02 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=54.8
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEe---------CCCCC---CCHHHHHHHHHHHHhCCCCeEEcCCCCC
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVD---------MEHGP---GGISDALACLHALAATGTPAILRLPESC 146 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilD---------lEh~~---~~~~~a~~~i~a~~~~g~~~iVRV~~~~ 146 (355)
||.|....+...+.. .-.+++.+..+|+|.|=+= ...+. .+.+.++.+...+.......+++..-..
T Consensus 10 LRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~ 89 (333)
T TIGR03217 10 LRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT 89 (333)
T ss_pred CCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC
Confidence 445555444433332 2345667778888887662 22221 2334444444433222233455443345
Q ss_pred HHHHHHHHhcCCCeEeec-CCCCHHHHHHHHHHcC
Q 018508 147 PTWAKKALDLGPQGVMFP-MIDSPEAAKEAVSYCR 180 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImvP-~Vesaeea~~vv~a~~ 180 (355)
...++.+.+.|++.|-+. +++..+.+++.++.+|
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak 124 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMAR 124 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHH
Confidence 677999999999987654 4444555666666655
No 304
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=69.03 E-value=28 Score=31.28 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=46.6
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCcEEEEe-CCCCC--------CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYDFVVVD-MEHGP--------GGISDALACLHALAATGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D~vilD-lEh~~--------~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL 154 (355)
...+|+.+ .++..+..+...|+|+|.+. ...+. ...+..+..... .+..+++=..+.++..+..++
T Consensus 104 ~~~~g~~~--~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~v~a~GGI~~~~i~~~~ 178 (212)
T PRK00043 104 DAIIGLST--HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA---VGDIPIVAIGGITPENAPEVL 178 (212)
T ss_pred CCEEEEeC--CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---cCCCCEEEECCcCHHHHHHHH
Confidence 34566554 47777888889999999875 11111 112333333222 221333434566788899999
Q ss_pred hcCCCeEee
Q 018508 155 DLGPQGVMF 163 (355)
Q Consensus 155 daGa~GImv 163 (355)
++|++||.+
T Consensus 179 ~~Ga~gv~~ 187 (212)
T PRK00043 179 EAGADGVAV 187 (212)
T ss_pred HcCCCEEEE
Confidence 999999886
No 305
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=68.80 E-value=83 Score=27.77 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=81.7
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..++..|..-...+.. ..+.....+.+....+|.+++|+.-...+--++...++.. ....+.++=....+......+
T Consensus 14 ~~l~~~L~~~g~~v~~--~~~~~~~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~-~~~~pii~ls~~~~~~~~~~~ 90 (227)
T PRK09836 14 EYLTKGLTEAGFVVDL--ADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSA-NKGMPILLLTALGTIEHRVKG 90 (227)
T ss_pred HHHHHHHHHCCCEEEE--ECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHHH
Confidence 3466666543333222 2233445566666779999999987544433333333321 123444443344456677889
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCC---c-cccccCCCceEEEEEEccHHHHHHHH
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGID---E-GYLSNYEEELLIMCQVESEEGVKRAE 229 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~---~-~y~~~~n~~i~vi~mIET~~av~nie 229 (355)
+++|+++++.-- -+.+++...++.+... +.+.... ....+|.- . .+.-..++. .+. =|+.-.+-++
T Consensus 91 ~~~Ga~~~l~kp-~~~~~l~~~i~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~i~-Lt~~E~~ll~ 160 (227)
T PRK09836 91 LELGADDYLVKP-FAFAELLARVRTLLRR--GAAVIIE---SQFQVADLMVDLVSRKVTRSGT---RIT-LTSKEFTLLE 160 (227)
T ss_pred HhCCCCEEEeCC-CCHHHHHHHHHHHHhc--ccccCCC---CcEEEcCEEEEcccCEEEECCE---EEe-cCHHHHHHHH
Confidence 999999876543 3556666555543211 1100000 00011110 0 000001111 111 3888888888
Q ss_pred HHhccCCccEEEEChhhHHhhc
Q 018508 230 DIAAVDGVDCVQMGPLDLSASM 251 (355)
Q Consensus 230 eIaavpgVD~l~iGp~DLs~sl 251 (355)
-++..+| -.+-..+|...+
T Consensus 161 ~l~~~~g---~~~sr~~l~~~~ 179 (227)
T PRK09836 161 FFLRHQG---EVLPRSLIASQV 179 (227)
T ss_pred HHHhCCC---eeEcHHHHHHHH
Confidence 8887654 455567777776
No 306
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=68.73 E-value=38 Score=32.77 Aligned_cols=100 Identities=9% Similarity=-0.038 Sum_probs=64.2
Q ss_pred HHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCC--C---C-eEEcCCCCCHHHHHH
Q 018508 79 RLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG--T---P-AILRLPESCPTWAKK 152 (355)
Q Consensus 79 ~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g--~---~-~iVRV~~~~~~~i~~ 152 (355)
.++......-.-++.+++..+..+...|++.|++=+=+ +.+++++++++++..+ . . ...|-..-... -..
T Consensus 63 a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~---saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~-~~y 138 (267)
T PRK10128 63 AIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVD---TAEQARQVVSATRYPPYGERGVGASVARAARWGRI-ENY 138 (267)
T ss_pred HHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcC---CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCCh-HHH
Confidence 33333333445667889999999999999999975543 5688999998876431 1 0 11222211110 011
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcCCC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~~p 182 (355)
+-.+-...++++||||++-++++.+.+.-|
T Consensus 139 ~~~an~~~~vi~qiEt~~a~~n~~~I~~~~ 168 (267)
T PRK10128 139 MAQANDSLCLLVQVESKTALDNLDEILDVE 168 (267)
T ss_pred HHHhccccEEEEEECCHHHHHhHHHHhCCC
Confidence 112234679999999999999999998763
No 307
>PTZ00333 triosephosphate isomerase; Provisional
Probab=68.59 E-value=62 Score=31.12 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=74.4
Q ss_pred HHHHhhhcCCcEEEEeCCCC--CC--CHHHHHHHHHHHHhCCCCeEEcCCCCCHH------------HHHHHHhc----C
Q 018508 98 LAEISGLAGYDFVVVDMEHG--PG--GISDALACLHALAATGTPAILRLPESCPT------------WAKKALDL----G 157 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~--~~--~~~~a~~~i~a~~~~g~~~iVRV~~~~~~------------~i~~aLda----G 157 (355)
.+++++..|+++++|---.- .+ +-+....-++++...|..|+|=|...... ++..+|+. .
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~ 160 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEA 160 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 45788899999999753211 11 22445555666677899999988875321 33444431 1
Q ss_pred CCeEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 158 PQGVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 158 a~GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..-|++ .++-++|+++++.+.+|..-. ..|+.. . ..+-+++-+.-| --+|
T Consensus 161 ~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~------------~~~~~~---~-~~~~~ILYGGSV----~~~N 220 (255)
T PTZ00333 161 WDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLA------------EKVGAD---V-AEATRIIYGGSV----NEKN 220 (255)
T ss_pred cceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHH------------Hhhccc---c-cccceEEEcCCC----CHHH
Confidence 112333 345588999888887763100 001000 0 000112222222 2368
Q ss_pred HHHHhccCCccEEEEChhhH
Q 018508 228 AEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DL 247 (355)
+.+|+..++|||+++|..=|
T Consensus 221 ~~~l~~~~~vDG~LvG~asl 240 (255)
T PTZ00333 221 CKELIKQPDIDGFLVGGASL 240 (255)
T ss_pred HHHHhcCCCCCEEEEehHhh
Confidence 89999999999999998744
No 308
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=68.58 E-value=1e+02 Score=28.99 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=49.8
Q ss_pred HHHcCCcEEEEEEecCCHHHHHHhh---hcCCcEEEEeCCCC-------------CCCHHHHHHHHHHHHhCCCCeEEcC
Q 018508 79 RLQSNETLYGLFLLSFSPTLAEISG---LAGYDFVVVDMEHG-------------PGGISDALACLHALAATGTPAILRL 142 (355)
Q Consensus 79 ~L~~G~~~~gl~v~~~sp~~~e~aa---~~G~D~vilDlEh~-------------~~~~~~a~~~i~a~~~~g~~~iVRV 142 (355)
++......++.-+.+++|+.+..++ ....|.|=|.+..- ..+.+.+.+++++++..+.++.||+
T Consensus 67 ~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKi 146 (233)
T cd02911 67 ALKDSNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKI 146 (233)
T ss_pred HhhccCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 3443334556666677776543332 22356555555421 0235667778888877788999987
Q ss_pred CCC---CH-HHHHHHHhcCCCeEe
Q 018508 143 PES---CP-TWAKKALDLGPQGVM 162 (355)
Q Consensus 143 ~~~---~~-~~i~~aLdaGa~GIm 162 (355)
... +. ...+.+.++|+++|-
T Consensus 147 r~g~~~~~~~la~~l~~aG~d~ih 170 (233)
T cd02911 147 RAGVDVDDEELARLIEKAGADIIH 170 (233)
T ss_pred cCCcCcCHHHHHHHHHHhCCCEEE
Confidence 633 23 334667789999763
No 309
>CHL00148 orf27 Ycf27; Reviewed
Probab=68.47 E-value=85 Score=27.77 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+++.|..-.. .+....+.....+.+....+|.+++|++....+--+....++. ....+.++=....+......+
T Consensus 20 ~~l~~~l~~~~~--~v~~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~--~~~~~ii~ls~~~~~~~~~~~ 95 (240)
T CHL00148 20 KILETRLSIIGY--EVITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRK--ESDVPIIMLTALGDVSDRITG 95 (240)
T ss_pred HHHHHHHHHCCC--EEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh--cCCCcEEEEECCCCHHhHHHH
Confidence 346666654222 2222223334556666677999999988764443333334433 233444443333455667789
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
++.|+++++.-- -+.+++...++.+
T Consensus 96 ~~~Ga~~~l~kp-~~~~~L~~~i~~~ 120 (240)
T CHL00148 96 LELGADDYVVKP-FSPKELEARIRSV 120 (240)
T ss_pred HHCCCCEEEeCC-CCHHHHHHHHHHH
Confidence 999999876543 4567776555443
No 310
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=68.40 E-value=60 Score=29.88 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=56.7
Q ss_pred HHHHHHHcCCcEEEEEE-ecCCH-HHHHHhhhcCCcEEEEeCCCC--C-C-CHHHHHHHHHHHHhCCCCeEEcCCCCCHH
Q 018508 75 SLKYRLQSNETLYGLFL-LSFSP-TLAEISGLAGYDFVVVDMEHG--P-G-GISDALACLHALAATGTPAILRLPESCPT 148 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v-~~~sp-~~~e~aa~~G~D~vilDlEh~--~-~-~~~~a~~~i~a~~~~g~~~iVRV~~~~~~ 148 (355)
-+++.|.. ++-+++-+ ...+. +..+.+....+|.+++|+-+- | . ..+-++. ++. .....+++|=....++.
T Consensus 5 gi~~lL~~-~~~~~~~v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~-l~~-~~p~~~iIvlt~~~~~~ 81 (207)
T PRK11475 5 GIESLFRK-FPGNPYKLHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTE-LAI-KFPRMRRLVIADDDIEA 81 (207)
T ss_pred HHHHHHhc-CCCCeeEEEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHH-HHH-HCCCCCEEEEeCCCCHH
Confidence 35666653 45555532 33444 455666666789999777654 2 1 2222222 221 12233433323333344
Q ss_pred HH-HHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 149 WA-KKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 149 ~i-~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
.+ ..++++|+.|+ ++|-.+.+++.++++.+.
T Consensus 82 ~~~~~~~~~Ga~gy-l~K~~~~~eL~~aI~~v~ 113 (207)
T PRK11475 82 RLIGSLSPSPLDGV-LSKASTLEILQQELFLSL 113 (207)
T ss_pred HHHHHHHHcCCeEE-EecCCCHHHHHHHHHHHH
Confidence 44 44558999996 577778888888777664
No 311
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=68.20 E-value=1.4e+02 Score=30.17 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=67.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHHH-hC-CCCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGP---GGISDALACLHALA-AT-GTPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~~-~~-g~~~iVRV~~ 144 (355)
+.+-++-+++...++.| +..+.+.+ +.+...+...| |.+-.+. ...+.+..+++++. .. ..++.+=...
T Consensus 7 k~lL~~A~~~~yaV~Af-N~~n~e~~~avi~AAEe~~sPvI-lq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDH 84 (347)
T PRK13399 7 RQLLDHAAENGYGVPAF-NVNNMEQILAIMEAAEATDSPVI-LQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDH 84 (347)
T ss_pred HHHHHHHHHCCceEEEE-EeCCHHHHHHHHHHHHHhCCCEE-EECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 34444555677788877 44455433 44555667744 4443331 34566677776553 44 3677777755
Q ss_pred C-CHHHHHHHHhcCCCeEeec------------CCCCHHHHHHHHHHcCC
Q 018508 145 S-CPTWAKKALDLGPQGVMFP------------MIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 145 ~-~~~~i~~aLdaGa~GImvP------------~Vesaeea~~vv~a~~~ 181 (355)
. +...+.+++++|...||+= +=++.+.-+++++.++.
T Consensus 85 g~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~ 134 (347)
T PRK13399 85 GNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHA 134 (347)
T ss_pred CCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHH
Confidence 4 4678999999999988873 44566777888888763
No 312
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=68.06 E-value=28 Score=35.55 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCC--CCC----------CCHHHHHHHHHHHHh-CCCCeEEcCCCCC
Q 018508 84 ETLYGLFLLSFSPT----LAEISGLAGYDFVVVDME--HGP----------GGISDALACLHALAA-TGTPAILRLPESC 146 (355)
Q Consensus 84 ~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlE--h~~----------~~~~~a~~~i~a~~~-~g~~~iVRV~~~~ 146 (355)
.|+|.......+++ .++.+...|+|++-|.+- |.+ .+.+.+++++++++. ...|++|.+...-
T Consensus 114 ~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~ 193 (385)
T PLN02495 114 RILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNI 193 (385)
T ss_pred CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCCh
Confidence 36666554434443 455666789999999884 331 345566667777653 4689999998654
Q ss_pred HH---HHHHHHhcCCCeEeecCCCCH
Q 018508 147 PT---WAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 147 ~~---~i~~aLdaGa~GImvP~Vesa 169 (355)
+. ..+.+++.|++||.+ ++|.
T Consensus 194 t~i~~ia~aa~~~Gadgi~l--iNT~ 217 (385)
T PLN02495 194 TDITQPARVALKSGCEGVAA--INTI 217 (385)
T ss_pred hhHHHHHHHHHHhCCCEEEE--eccc
Confidence 32 246688899999987 4444
No 313
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=68.00 E-value=60 Score=32.66 Aligned_cols=34 Identities=29% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 147 PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+..++..-+.|+..|++|..-|.+|++++.+.+.
T Consensus 127 ~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 127 AETAKFWKELGAKRVVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred HHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhCC
Confidence 3456667788999999999999999999999983
No 314
>PRK14567 triosephosphate isomerase; Provisional
Probab=67.91 E-value=67 Score=30.95 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHHHhhhcCCcEEEEeC-CCCC---CCHHHHHHHHHHHHhCCCCeEEcCCCCCHH------------HHHHHHhc-C---
Q 018508 98 LAEISGLAGYDFVVVDM-EHGP---GGISDALACLHALAATGTPAILRLPESCPT------------WAKKALDL-G--- 157 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDl-Eh~~---~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~------------~i~~aLda-G--- 157 (355)
.+++++..|.++++|-- |+-- -+.+....-++++...|..|+|=|...... ++...|+. .
T Consensus 77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~ 156 (253)
T PRK14567 77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQ 156 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHH
Confidence 45788899999999753 2111 123344455566667899999988875321 23334421 1
Q ss_pred CCeEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 158 PQGVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 158 a~GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..-|++ .++-|+++++++.+.+|..- .. +|.. . ..+-.++-+.-| .-+|
T Consensus 157 ~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l---~~----------~~~~---~-a~~v~IlYGGSV----~~~N 215 (253)
T PRK14567 157 LAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLL---AK----------VDER---L-AKNIKIVYGGSL----KAEN 215 (253)
T ss_pred hCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHH---Hh----------hccc---c-cccceEEEcCcC----CHHH
Confidence 123555 56788999998888876310 00 0000 0 001123333444 3479
Q ss_pred HHHHhccCCccEEEEChhhH
Q 018508 228 AEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DL 247 (355)
+.+|++.+.|||+++|..=|
T Consensus 216 ~~~l~~~~diDG~LVGgasL 235 (253)
T PRK14567 216 AKDILSLPDVDGGLIGGASL 235 (253)
T ss_pred HHHHHcCCCCCEEEeehhhh
Confidence 99999999999999998744
No 315
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=67.80 E-value=47 Score=34.40 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=71.5
Q ss_pred CchHHHHHHHc----CCcEEEEEEecCCH--------HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCe
Q 018508 72 SPESLKYRLQS----NETLYGLFLLSFSP--------TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPA 138 (355)
Q Consensus 72 ~~n~lk~~L~~----G~~~~gl~v~~~sp--------~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~ 138 (355)
.++++++.+++ |..+-|..+...|| +.++.+...|.|.|+|-=--|..+...+.+++.++.. .+.
T Consensus 123 D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~-- 200 (472)
T COG5016 123 DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV-- 200 (472)
T ss_pred chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCC--
Confidence 46677766654 77888888877666 4566778899999998766777788888888888753 343
Q ss_pred EEcCCCCCH-----HHHHHHHhcCCCe---EeecCCCCHHH--HHHHHHHcC
Q 018508 139 ILRLPESCP-----TWAKKALDLGPQG---VMFPMIDSPEA--AKEAVSYCR 180 (355)
Q Consensus 139 iVRV~~~~~-----~~i~~aLdaGa~G---ImvP~Vesaee--a~~vv~a~~ 180 (355)
-|++..+.+ ....+++++|+|+ -+-|+..+-.| .+.++.+++
T Consensus 201 pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~ 252 (472)
T COG5016 201 PVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALR 252 (472)
T ss_pred eeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhc
Confidence 344444432 3457899999976 45666544332 344555544
No 316
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=67.36 E-value=1.3e+02 Score=29.47 Aligned_cols=208 Identities=18% Similarity=0.227 Sum_probs=113.1
Q ss_pred HHHHHHHcCCcEEEEEEecCCHH----HHHHhhhcCCcEEEEeCCCCC----CCHHHHHHHHHHH-HhC--CCCeEEcCC
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPT----LAEISGLAGYDFVVVDMEHGP----GGISDALACLHAL-AAT--GTPAILRLP 143 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~----~~e~aa~~G~D~vilDlEh~~----~~~~~a~~~i~a~-~~~--g~~~iVRV~ 143 (355)
.+-+..+++...++.|. ..+.+ .++.+-..+...|+ .+-.+. ...+.+..+++++ +.. ..|+.|=..
T Consensus 8 ~iL~~A~~~~yAV~AfN-~~n~e~~~avi~AAee~~sPvIl-q~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLD 85 (288)
T TIGR00167 8 ELLQDAKEEGYAIPAFN-INNLETINAVLEAAAEEKSPVII-QFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLD 85 (288)
T ss_pred HHHHHHHHCCceEEEEE-ECCHHHHHHHHHHHHHHCCCEEE-ECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECC
Confidence 34444556777888774 44444 34555567777544 443321 2344555555543 445 677777776
Q ss_pred CC-CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE-
Q 018508 144 ES-CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM- 216 (355)
Q Consensus 144 ~~-~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi- 216 (355)
.. +...+.++++.|...||+ |.=++.+.-+++++.++.. |.+. -+-.|. +...++.....
T Consensus 86 Hg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~-----gv~V----EaElG~----vgg~e~~~~~~~ 152 (288)
T TIGR00167 86 HGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKM-----GVSV----EAELGT----LGGEEDGVSVAD 152 (288)
T ss_pred CCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEEee----ccCccCCccccc
Confidence 55 467899999999988886 8888888889999988632 1110 000000 00000000000
Q ss_pred --EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC-CCCC--CHHHHHHHHHHHHHHHhCCCc-ee-ecccCCch
Q 018508 217 --CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL-WDPG--HRKVREMMRVAEKGVLGGGKA-YL-AGFAMPHD 289 (355)
Q Consensus 217 --~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~-~~~~--~p~v~~ai~~iv~aa~a~g~~-~~-g~~~~d~~ 289 (355)
...=+| +.+.++++--|||.|-+.-+-. =|.. ..+. ..++ +++|.++. +++ ++ |+-..+.+
T Consensus 153 ~~~~~T~p---eea~~Fv~~TgvD~LAvaiGt~---HG~y~~~p~~Ld~~~---L~~I~~~v---~vPLVlHGgSG~~~e 220 (288)
T TIGR00167 153 ESALYTDP---EEAKEFVKLTGVDSLAAAIGNV---HGVYKGEPKGLDFER---LEEIQKYV---NLPLVLHGGSGIPDE 220 (288)
T ss_pred ccccCCCH---HHHHHHHhccCCcEEeeccCcc---ccccCCCCCccCHHH---HHHHHHHh---CCCEEEeCCCCCCHH
Confidence 001122 4777788666899876533211 1221 1111 2233 33333322 333 12 22222347
Q ss_pred hHHHHHHCCCCEEEecchHH
Q 018508 290 APLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 290 ~a~~~~~~G~~~vs~~~D~~ 309 (355)
+.++.++.|+.-+-+++|..
T Consensus 221 ~~~~ai~~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 221 EIKKAISLGVVKVNIDTELQ 240 (288)
T ss_pred HHHHHHHcCCeEEEcChHHH
Confidence 78999999999999999963
No 317
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=67.33 E-value=22 Score=35.76 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=48.9
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC--------CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhc
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG--------PGGISDALACLHALAATGTPAILRLPESCPTWAKKALDL 156 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~--------~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLda 156 (355)
..+|.- ..++..+..+...|+|||++=-=.. +.+.+.+..... .. ..|++=+.+.++..+..++.+
T Consensus 241 ~iIG~S--~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~---~~-~iPv~AiGGI~~~ni~~l~~~ 314 (347)
T PRK02615 241 KIIGRS--TTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAK---EA-PIPWFAIGGIDKSNIPEVLQA 314 (347)
T ss_pred CEEEEe--cCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHH---hC-CCCEEEECCCCHHHHHHHHHc
Confidence 445544 5678888898899999998742222 223333333322 22 356777888889999999999
Q ss_pred CCCeEee
Q 018508 157 GPQGVMF 163 (355)
Q Consensus 157 Ga~GImv 163 (355)
|++||.+
T Consensus 315 Ga~gVAv 321 (347)
T PRK02615 315 GAKRVAV 321 (347)
T ss_pred CCcEEEE
Confidence 9998764
No 318
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.29 E-value=37 Score=31.59 Aligned_cols=167 Identities=22% Similarity=0.186 Sum_probs=89.4
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCH-----------HHHHHHHhcCCCeE--eec
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCP-----------TWAKKALDLGPQGV--MFP 164 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-----------~~i~~aLdaGa~GI--mvP 164 (355)
.++.+...|++.|+++..... .+...+.. .......+|+.|.... ..+..+++.||+.| +++
T Consensus 24 ~~~~a~~~~~~av~v~p~~~~----~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~ 98 (236)
T PF01791_consen 24 LCREAIEYGFDAVCVTPGYVK----PAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVIN 98 (236)
T ss_dssp HHHHHHHHTSSEEEEEGGGHH----HHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHhCCCEEEECHHHHH----HHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeecc
Confidence 567777889999998876542 11111100 0013567889887531 34678999999863 333
Q ss_pred C--------CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc----------cHHHHH
Q 018508 165 M--------IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE----------SEEGVK 226 (355)
Q Consensus 165 ~--------Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE----------T~~av~ 226 (355)
. -+..++++++++.|+. || +.+++-.. .++-+.
T Consensus 99 ~~~~~~~~~~~~~~~i~~v~~~~~~-----------------~g------------l~vIlE~~l~~~~~~~~~~~~~I~ 149 (236)
T PF01791_consen 99 YGALGSGNEDEVIEEIAAVVEECHK-----------------YG------------LKVILEPYLRGEEVADEKKPDLIA 149 (236)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHT-----------------SE------------EEEEEEECECHHHBSSTTHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhc-----------------CC------------cEEEEEEecCchhhcccccHHHHH
Confidence 3 1223455667776651 11 12221111 233467
Q ss_pred HHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHH---hCCCceeeccc-----CCchhHHHHHHCC
Q 018508 227 RAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVL---GGGKAYLAGFA-----MPHDAPLEMKSRG 298 (355)
Q Consensus 227 nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~---a~g~~~~g~~~-----~d~~~a~~~~~~G 298 (355)
++-.|+.--|.|+|=.... .. ....+.-.+.+.+++..+. +.+++..||+- ...+.+..+++.|
T Consensus 150 ~a~ria~e~GaD~vKt~tg-------~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aG 221 (236)
T PF01791_consen 150 RAARIAAELGADFVKTSTG-------KP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAG 221 (236)
T ss_dssp HHHHHHHHTT-SEEEEE-S-------SS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCEEEecCC-------cc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcC
Confidence 7777776568898866555 11 1222334455666666552 22355566651 1235677778999
Q ss_pred C--CEEEecc
Q 018508 299 Y--HMVSGAV 306 (355)
Q Consensus 299 ~--~~vs~~~ 306 (355)
. .+++.|-
T Consensus 222 a~~~G~~~Gr 231 (236)
T PF01791_consen 222 ADRIGTSSGR 231 (236)
T ss_dssp HSEEEEEEHH
T ss_pred ChhHHHHHHH
Confidence 9 5555553
No 319
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=67.22 E-value=88 Score=30.21 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=64.0
Q ss_pred hHHHHHHH-cCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCC-----CHHHHHHHHHHHHh-CCCCeEEcCCCCC
Q 018508 74 ESLKYRLQ-SNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPG-----GISDALACLHALAA-TGTPAILRLPESC 146 (355)
Q Consensus 74 n~lk~~L~-~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~-----~~~~a~~~i~a~~~-~g~~~iVRV~~~~ 146 (355)
..+++.++ .|=..+.+..|..+++.++.++...-.||.+=.--+.+ -..++.+.++.++. ...+++|-..-.+
T Consensus 130 ~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~ 209 (259)
T PF00290_consen 130 EELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGIST 209 (259)
T ss_dssp HHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-S
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCC
Confidence 46677665 56677777778888999999888888888876555532 13567777777754 5688899988888
Q ss_pred HHHHHHHHhcCCCeEee
Q 018508 147 PTWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv 163 (355)
+.+++++. .|+|||+|
T Consensus 210 ~e~~~~~~-~~aDGvIV 225 (259)
T PF00290_consen 210 PEQAKKLA-AGADGVIV 225 (259)
T ss_dssp HHHHHHHH-TTSSEEEE
T ss_pred HHHHHHHH-ccCCEEEE
Confidence 99999988 99999997
No 320
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=66.89 E-value=1.1e+02 Score=30.95 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=73.2
Q ss_pred HHHHHHhcCCCe--EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHH
Q 018508 149 WAKKALDLGPQG--VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~G--ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~a 224 (355)
+|.++-++|++- |-+|-.+.++.+..+++.+. +.+++=| .-..|
T Consensus 39 QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~--------------------------------iPlVADIHFd~~lA 86 (346)
T TIGR00612 39 QIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTN--------------------------------VPLVADIHFDYRLA 86 (346)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCC--------------------------------CCEEEeeCCCcHHH
Confidence 466677778774 44555555555555554222 2333333 34555
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc-cCC-------------c--
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF-AMP-------------H-- 288 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~-~~d-------------~-- 288 (355)
+..++. |+|.+=|-|+-+ .+ .+-+..++++|+++++++--|+ .++ +
T Consensus 87 l~a~~~-----g~dkiRINPGNi----------g~---~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~ea 148 (346)
T TIGR00612 87 ALAMAK-----GVAKVRINPGNI----------GF---RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEA 148 (346)
T ss_pred HHHHHh-----ccCeEEECCCCC----------CC---HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHH
Confidence 544443 788887776533 22 3556788899999998752222 221 1
Q ss_pred ------hhHHHHHHCCCCEEEec---chHHHHHHHHHHHHHH
Q 018508 289 ------DAPLEMKSRGYHMVSGA---VDVGLFRSAAVEDVAR 321 (355)
Q Consensus 289 ------~~a~~~~~~G~~~vs~~---~D~~ll~~~~~~~~~~ 321 (355)
+.++.+-++||.-+.++ +|+..+-++++...+.
T Consensus 149 mveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 149 MVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAER 190 (346)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhh
Confidence 33556778999876554 7888888888665544
No 321
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=66.87 E-value=95 Score=27.74 Aligned_cols=72 Identities=18% Similarity=0.070 Sum_probs=40.8
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
+.+++. +....++.+..+|+|.|++-.+. .+.....++.++..+....+=+....+....+.+..+++.|++
T Consensus 61 v~lm~~-~~~~~~~~~~~~gadgv~vh~~~----~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 61 VHLMVE-NPDRYIEDFAEAGADIITVHPEA----SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLL 132 (210)
T ss_pred EEeeeC-CHHHHHHHHHHcCCCEEEEccCC----chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 344444 34567888899999999984432 1334455555555565544433333333333334456777665
No 322
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=66.42 E-value=92 Score=27.38 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=56.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|+.....+ . ...+ ...++.+....+|.|++|++-...+--++...++. ....++++=....+......
T Consensus 15 ~~l~~~L~~~g~~v--~-~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~--~~~~pvi~lt~~~~~~~~~~ 89 (225)
T PRK10529 15 RFLRTALEGDGMRV--F-EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ--WSAIPVIVLSARSEESDKIA 89 (225)
T ss_pred HHHHHHHHHCCCEE--E-EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHc--CCCCCEEEEECCCCHHHHHH
Confidence 34566665422221 1 2233 34455566667999999998765443344334432 23344444444455666788
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++++|+++.+.--+ +.+++...++.
T Consensus 90 ~~~~ga~~~l~kP~-~~~~l~~~i~~ 114 (225)
T PRK10529 90 ALDAGADDYLSKPF-GIGELQARLRV 114 (225)
T ss_pred HHHcCCCEEEeCCC-CHHHHHHHHHH
Confidence 99999988664433 45666555544
No 323
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=66.23 E-value=58 Score=31.68 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=69.0
Q ss_pred HHHhhhcCCcEEEEeCCCCC-CCHH---HHHHHHHHHHhCCCCeE----EcCCCC------CHHHH----HHHHhcCCCe
Q 018508 99 AEISGLAGYDFVVVDMEHGP-GGIS---DALACLHALAATGTPAI----LRLPES------CPTWA----KKALDLGPQG 160 (355)
Q Consensus 99 ~e~aa~~G~D~vilDlEh~~-~~~~---~a~~~i~a~~~~g~~~i----VRV~~~------~~~~i----~~aLdaGa~G 160 (355)
+|.+...|+|.|-+=.-=+. .+.+ ++.+....+...|.+.+ .|=+.. ++..+ +-+.+.|||-
T Consensus 103 ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADI 182 (265)
T COG1830 103 VEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADI 182 (265)
T ss_pred HHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCe
Confidence 35555556665443332221 1222 23333444566777653 454443 23333 3567889999
Q ss_pred EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc-cHHHHHHHHHHhccCCccE
Q 018508 161 VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE-SEEGVKRAEDIAAVDGVDC 239 (355)
Q Consensus 161 ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE-T~~av~nieeIaavpgVD~ 239 (355)
|=+....+.+..+++++.|. -|.=.+|-+ -.| ..+.++-..+.... |--|
T Consensus 183 iK~~ytg~~e~F~~vv~~~~-vpVviaGG~---------------------------k~~~~~~~l~~~~~ai~a-Ga~G 233 (265)
T COG1830 183 IKTKYTGDPESFRRVVAACG-VPVVIAGGP---------------------------KTETEREFLEMVTAAIEA-GAMG 233 (265)
T ss_pred EeecCCCChHHHHHHHHhCC-CCEEEeCCC---------------------------CCCChHHHHHHHHHHHHc-cCcc
Confidence 99999999999999999997 443222211 122 34556666665532 6778
Q ss_pred EEEChh
Q 018508 240 VQMGPL 245 (355)
Q Consensus 240 l~iGp~ 245 (355)
+.+|.|
T Consensus 234 ~~~GRN 239 (265)
T COG1830 234 VAVGRN 239 (265)
T ss_pred hhhhhh
Confidence 888887
No 324
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=66.17 E-value=1.2e+02 Score=28.82 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=67.4
Q ss_pred HHHHhhhcCCcEEEEeCCCCCCCHHH----HHHHHHHHHhCCCCeEEc-------C-CCCCHHH----HHHHHhcCCCeE
Q 018508 98 LAEISGLAGYDFVVVDMEHGPGGISD----ALACLHALAATGTPAILR-------L-PESCPTW----AKKALDLGPQGV 161 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~~~~~~----a~~~i~a~~~~g~~~iVR-------V-~~~~~~~----i~~aLdaGa~GI 161 (355)
.++.+...|+|.|-+=+-.+...... ++.....++..|.+.+|= + ...+... .+.+.+.||+-|
T Consensus 98 ~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 98 TVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIV 177 (267)
T ss_pred cHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEE
Confidence 46778888988766665555432222 233334455577776651 1 1122233 345667899988
Q ss_pred eecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE--EEEcc-HHHHHHHHHHhccCCcc
Q 018508 162 MFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM--CQVES-EEGVKRAEDIAAVDGVD 238 (355)
Q Consensus 162 mvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi--~mIET-~~av~nieeIaavpgVD 238 (355)
-.....+.+.++++++.++-| +... +-.+| .++++++.++.+. |.+
T Consensus 178 Kt~~~~~~~~l~~~~~~~~ip------------------------------V~a~GGi~~~~~~~~l~~v~~~~~a-GA~ 226 (267)
T PRK07226 178 KTNYTGDPESFREVVEGCPVP------------------------------VVIAGGPKTDTDREFLEMVRDAMEA-GAA 226 (267)
T ss_pred eeCCCCCHHHHHHHHHhCCCC------------------------------EEEEeCCCCCCHHHHHHHHHHHHHc-CCc
Confidence 776655566666666654321 1111 11234 3577777777653 788
Q ss_pred EEEEChh
Q 018508 239 CVQMGPL 245 (355)
Q Consensus 239 ~l~iGp~ 245 (355)
|+.+|.+
T Consensus 227 Gis~gr~ 233 (267)
T PRK07226 227 GVAVGRN 233 (267)
T ss_pred EEehhhh
Confidence 9988887
No 325
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=66.07 E-value=1.2e+02 Score=28.57 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCCcEEEE-eCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCC-HHHHHHHHhc
Q 018508 96 PTLAEISGLAGYDFVVV-DMEHGPGGISDALACLHALAATGTPAILRLPESC-PTWAKKALDL 156 (355)
Q Consensus 96 p~~~e~aa~~G~D~vil-DlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~-~~~i~~aLda 156 (355)
..+++.++.+|+|.+++ |+ | .++....+..++..|..+++=++... ...++.+++.
T Consensus 94 ~~fi~~~~~aG~~giiipDl-~----~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~ 151 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDL-P----PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL 151 (242)
T ss_pred HHHHHHHHHCCCcEEEECCC-C----HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh
Confidence 66889999999998877 65 3 25667778888888877666565554 3456666663
No 326
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.04 E-value=1.3e+02 Score=28.93 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=71.1
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCC-HHHHHHHHhcCCCeEee-cCC-------
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESC-PTWAKKALDLGPQGVMF-PMI------- 166 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~-~~~i~~aLdaGa~GImv-P~V------- 166 (355)
..+++.++.+|+|.+++- |-| .++....+..++..|..++.=+.... ...++.+......-|=+ ...
T Consensus 107 e~f~~~~~~aGvdGviip--DLp--~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~ 182 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIP--DLP--PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARS 182 (258)
T ss_pred HHHHHHHHHcCCcEEEEC--CCC--HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc
Confidence 457899999999998872 223 47788888888888877665444444 34566555543322221 111
Q ss_pred CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhh
Q 018508 167 DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLD 246 (355)
Q Consensus 167 esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~D 246 (355)
...+++.+.++.++.. .+-.+.++.-|-|++-+..+-+ ..|++++|+.
T Consensus 183 ~~~~~~~~~i~~vk~~--------------------------~~~pv~vGfGI~~~e~v~~~~~-----~ADGviVGSa- 230 (258)
T PRK13111 183 ADAADLAELVARLKAH--------------------------TDLPVAVGFGISTPEQAAAIAA-----VADGVIVGSA- 230 (258)
T ss_pred CCCccHHHHHHHHHhc--------------------------CCCcEEEEcccCCHHHHHHHHH-----hCCEEEEcHH-
Confidence 1123344444444321 1234666777777776666554 3589999997
Q ss_pred HHhhc
Q 018508 247 LSASM 251 (355)
Q Consensus 247 Ls~sl 251 (355)
+...+
T Consensus 231 iv~~~ 235 (258)
T PRK13111 231 LVKII 235 (258)
T ss_pred HHHHH
Confidence 43333
No 327
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=65.79 E-value=63 Score=32.20 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=53.3
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEe---------CCCCC---CCHHHHHHHHHHHHhCCCCeEEcCCCCC
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVD---------MEHGP---GGISDALACLHALAATGTPAILRLPESC 146 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilD---------lEh~~---~~~~~a~~~i~a~~~~g~~~iVRV~~~~ 146 (355)
||.|....+..++.. .-..++.+..+|+|.|=+= ...++ .+.+.++.............+++..-..
T Consensus 11 LRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~ 90 (337)
T PRK08195 11 LRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGT 90 (337)
T ss_pred CCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCccc
Confidence 445555555444332 2345677778888887662 11121 1222222222221112223345433335
Q ss_pred HHHHHHHHhcCCCeEeec-CCCCHHHHHHHHHHcC
Q 018508 147 PTWAKKALDLGPQGVMFP-MIDSPEAAKEAVSYCR 180 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImvP-~Vesaeea~~vv~a~~ 180 (355)
...+.++.+.|++.|-+. +++..+.+++.++.+|
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak 125 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLAR 125 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHH
Confidence 677999999999987655 5555566666666655
No 328
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=65.77 E-value=19 Score=32.90 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHhcCCCeEeecCCCCHHHHHHHHHHcCC
Q 018508 150 AKKALDLGPQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 150 i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~ 181 (355)
+..+.++|++.|.+.---..+.+..+++.++.
T Consensus 73 ~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~ 104 (215)
T PRK13813 73 CEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAE 104 (215)
T ss_pred HHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHh
Confidence 46788899999888776555668888887763
No 329
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=65.76 E-value=39 Score=30.16 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=51.8
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC---------CCCHHHHHHHHHHHHhCCCCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG---------PGGISDALACLHALAATGTPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~---------~~~~~~a~~~i~a~~~~g~~~iVRV~~ 144 (355)
..+|+.+..+ .. +.+...+++.+..+...|+|++.++-=.. +.+.+..+...... .+. +++=..+
T Consensus 87 ~~~r~~~~~~-~~--ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~-pv~a~GG 160 (196)
T TIGR00693 87 SEARALLGPD-KI--IGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDI-PIVAIGG 160 (196)
T ss_pred HHHHHhcCCC-CE--EEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCC-CEEEECC
Confidence 4455554332 23 34567788878788889999999754322 12333333333221 123 3444567
Q ss_pred CCHHHHHHHHhcCCCeEee
Q 018508 145 SCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 145 ~~~~~i~~aLdaGa~GImv 163 (355)
.++..+..++..|++||.+
T Consensus 161 I~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 161 ITLENAAEVLAAGADGVAV 179 (196)
T ss_pred cCHHHHHHHHHcCCCEEEE
Confidence 7788899999999999876
No 330
>PRK00208 thiG thiazole synthase; Reviewed
Probab=65.46 E-value=30 Score=33.36 Aligned_cols=85 Identities=21% Similarity=0.192 Sum_probs=51.4
Q ss_pred EecCCHHHHHHhhhcCCcEEEE--eCCCC---CCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 91 LLSFSPTLAEISGLAGYDFVVV--DMEHG---PGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vil--DlEh~---~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
+-.+++..++.+...|.|+|.- .+=.+ ..+.+ +++.+.. .+.++++==.=..+.++.++++.|++||++=
T Consensus 129 yc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~----~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 129 YCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPY----NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred EeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHH----HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3478999999999999999933 11111 12322 2333322 3556655433345889999999999998863
Q ss_pred ----CCCCHHH-HHHHHHHc
Q 018508 165 ----MIDSPEA-AKEAVSYC 179 (355)
Q Consensus 165 ----~Vesaee-a~~vv~a~ 179 (355)
+-.++.. +++++.++
T Consensus 205 SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 205 TAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred hHhhCCCCHHHHHHHHHHHH
Confidence 2233444 34555544
No 331
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=65.30 E-value=92 Score=27.02 Aligned_cols=100 Identities=13% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
.++..|..-...+ . ...+ ....+.+....+|.+++|+.....+--+....++.. ....++++=....+......+
T Consensus 15 ~l~~~L~~~~~~v--~-~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~ 90 (222)
T PRK10643 15 GLILALQTEGYAC--D-CASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQK-KYTLPVLILTARDTLEDRVAG 90 (222)
T ss_pred HHHHHHHHCCCEE--E-EeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhc-CCCCcEEEEECCCCHHHHHHH
Confidence 4566665432222 1 2233 334555666779999999987544433333333321 123344442233445667889
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
++.|+++++.--+ +.+++...++.+
T Consensus 91 ~~~ga~~~l~kp~-~~~~l~~~i~~~ 115 (222)
T PRK10643 91 LDVGADDYLVKPF-ALEELHARIRAL 115 (222)
T ss_pred HhcCCCeEEeCCC-CHHHHHHHHHHH
Confidence 9999998776544 456665555443
No 332
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=65.29 E-value=25 Score=36.84 Aligned_cols=106 Identities=23% Similarity=0.280 Sum_probs=66.4
Q ss_pred chHHHHHHHcCCcEEEEEEecCC--HHHHHHhhhcCCcEE-EEeCCCCCCCHHHHHHHHHHHHhCCCCeEEc----C-CC
Q 018508 73 PESLKYRLQSNETLYGLFLLSFS--PTLAEISGLAGYDFV-VVDMEHGPGGISDALACLHALAATGTPAILR----L-PE 144 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~s--p~~~e~aa~~G~D~v-ilDlEh~~~~~~~a~~~i~a~~~~g~~~iVR----V-~~ 144 (355)
||...|.|..|+..+|.--...+ ..+++.++..|.|++ ++| ...+.+.++..+.+++..|..+.+= . |.
T Consensus 83 ~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 83 PNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 34444444445555554322222 235888999999974 344 4456777777787777666543211 1 11
Q ss_pred CCH----HHHHHHHhcCCCeEeecCC---CCHHHHHHHHHHcCC
Q 018508 145 SCP----TWAKKALDLGPQGVMFPMI---DSPEAAKEAVSYCRF 181 (355)
Q Consensus 145 ~~~----~~i~~aLdaGa~GImvP~V---esaeea~~vv~a~~~ 181 (355)
.+. ..++.+.++|++.|.+.-. -+|+++.+++++++.
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh
Confidence 122 2357788999999988754 689999999999874
No 333
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=65.21 E-value=92 Score=26.99 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=56.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+++.|......+ ..........+.+....+|.+++|++....+-......++.. ....++++-....+.....++
T Consensus 14 ~~l~~~l~~~~~~v--~~~~~~~~~~~~~~~~~~d~vild~~~~~~~~~~~~~~i~~~-~~~~~ii~lt~~~~~~~~~~~ 90 (221)
T PRK15479 14 HWLEKALVQNGFAV--DCVFDGLAADHLLQSEMYALAVLDINMPGMDGLEVLQRLRKR-GQTLPVLLLTARSAVADRVKG 90 (221)
T ss_pred HHHHHHHHHCCCEE--EEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHH
Confidence 34556664322222 222233334556666779999999876543333333333321 223455554455556667889
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
++.|+++++..-. +.+++...++.+
T Consensus 91 ~~~g~~~~i~kp~-~~~~l~~~i~~~ 115 (221)
T PRK15479 91 LNVGADDYLPKPF-ELEELDARLRAL 115 (221)
T ss_pred HHcCCCeeEeCCC-CHHHHHHHHHHH
Confidence 9999998765443 456665555443
No 334
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=65.14 E-value=1.4e+02 Score=28.96 Aligned_cols=89 Identities=19% Similarity=0.323 Sum_probs=56.9
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHH-HhCCCC-eEE
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHAL-AATGTP-AIL 140 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~-~~~g~~-~iV 140 (355)
...||++.++|++. ...+.-+...+..+..+|+|.|..- .++. +.+.+++...++++ +..+.+ +++
T Consensus 4 ~~~lr~~~~~g~~i--~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vva 81 (264)
T PRK00311 4 ISDLQKMKQEGEKI--VMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVA 81 (264)
T ss_pred HHHHHHHHhCCCCE--EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEE
Confidence 46788988888875 3445678888889999999999853 1111 24566666666654 334444 444
Q ss_pred cCCCC----CHHH----HHHHHh-cCCCeEee
Q 018508 141 RLPES----CPTW----AKKALD-LGPQGVMF 163 (355)
Q Consensus 141 RV~~~----~~~~----i~~aLd-aGa~GImv 163 (355)
=++-. ++.. ..++++ +|++||-+
T Consensus 82 D~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 82 DMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred eCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 45422 2232 355666 99999987
No 335
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.70 E-value=1.3e+02 Score=28.70 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=61.8
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCC----------CCHHHHHHHHHHHH-hCCCCeEEcCCCCCH
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGP----------GGISDALACLHALA-ATGTPAILRLPESCP 147 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~----------~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~ 147 (355)
||.|+...+...... .-.+++.+..+|.|+|=+=.=.+. .+.+..+.+..... ......++|....+.
T Consensus 6 LRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 85 (266)
T cd07944 6 LRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDI 85 (266)
T ss_pred cccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCH
Confidence 677777776654332 344667788899998755422111 12333344443321 234456788776666
Q ss_pred HHHHHHHhcCCCeEeec-CCCCHHHHHHHHHHcC
Q 018508 148 TWAKKALDLGPQGVMFP-MIDSPEAAKEAVSYCR 180 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP-~Vesaeea~~vv~a~~ 180 (355)
..+..+.+.|++.|-+. ..+..+++..+++.+|
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak 119 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIK 119 (266)
T ss_pred HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHH
Confidence 78888999999885554 3466777777777665
No 336
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=64.55 E-value=94 Score=26.87 Aligned_cols=165 Identities=12% Similarity=0.004 Sum_probs=81.0
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL 154 (355)
.++..|..-...+. ...+.....+.+....+|.|++|+.....+--+....++.. ....+++|=....+......++
T Consensus 13 ~l~~~l~~~~~~v~--~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~-~~~~~iivls~~~~~~~~~~~~ 89 (218)
T TIGR01387 13 YLQQGLSESGYVVD--AASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRS-GKQTPVLFLTARDSVADKVKGL 89 (218)
T ss_pred HHHHHHHHCCCEEE--EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcc-CCCCcEEEEEcCCCHHHHHHHH
Confidence 45566653322222 22233445566777789999999876544333333333321 1234444433445566778899
Q ss_pred hcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhcc
Q 018508 155 DLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAV 234 (355)
Q Consensus 155 daGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaav 234 (355)
++|+++++.-- -+.+++...++.+.. +.+...........+........-..+.. .+ -=|+.-.+-+.-++.-
T Consensus 90 ~~Ga~~~l~kp-~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~Lt~~E~~il~~l~~~ 162 (218)
T TIGR01387 90 DLGADDYLVKP-FSFSELLARVRTLLR---RSHSLNSTVLEIADLRMDSVRHRVSRGNI--RI-TLTRKEFQLLWLLMRR 162 (218)
T ss_pred HcCCCeEEECC-CCHHHHHHHHHHHhc---ccccCCCCeEEECCEEEEcccCEEEECCE--EE-eCCHHHHHHHHHHHhC
Confidence 99999866543 455666655554321 11111000000000000000000000001 11 2378888888888875
Q ss_pred CCccEEEEChhhHHhhcC
Q 018508 235 DGVDCVQMGPLDLSASMG 252 (355)
Q Consensus 235 pgVD~l~iGp~DLs~slG 252 (355)
+ +-.+...+|...+.
T Consensus 163 ~---~~~~sr~~i~~~~~ 177 (218)
T TIGR01387 163 T---GEVLPRTVIASLVW 177 (218)
T ss_pred C---CeeEcHHHHHHHhc
Confidence 4 35677777777763
No 337
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=64.03 E-value=8.2 Score=32.96 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.5
Q ss_pred CeEEcCCCC---CHHHHHHHHhcCCCeEeecCCC
Q 018508 137 PAILRLPES---CPTWAKKALDLGPQGVMFPMID 167 (355)
Q Consensus 137 ~~iVRV~~~---~~~~i~~aLdaGa~GImvP~Ve 167 (355)
.-+||||-. ++.++.+++..|||||+|=-+.
T Consensus 29 vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 29 VRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred eEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 458888765 6889999999999999996654
No 338
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=63.88 E-value=57 Score=32.16 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=21.7
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhh
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLD 246 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~D 246 (355)
+..|.....+.++++++...+|+|.+|..=
T Consensus 294 i~~G~i~t~~~a~~~l~~g~aD~V~~gR~~ 323 (336)
T cd02932 294 IAVGLITDPEQAEAILESGRADLVALGREL 323 (336)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeehhhHHH
Confidence 345666667778888875569999998763
No 339
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=63.68 E-value=1.1e+02 Score=27.13 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=56.3
Q ss_pred HHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~ 152 (355)
.++..|...... +. ...+ ....+.+....+|.|++|++-...+--+....++.... ...++++=....+......
T Consensus 17 ~l~~~L~~~g~~--v~-~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls~~~~~~~~~~ 93 (229)
T PRK10161 17 MVCFVLEQNGFQ--PV-EAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93 (229)
T ss_pred HHHHHHHHCCCE--EE-EECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEECCCCHHHHHH
Confidence 455666532222 22 2333 34555666667999999988654443333333333211 2344444334445667788
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
++++|+++++.--+ +.+++...+..+
T Consensus 94 ~~~~Ga~~~l~kp~-~~~~L~~~i~~~ 119 (229)
T PRK10161 94 GLETGADDYITKPF-SPKELVARIKAV 119 (229)
T ss_pred HHHcCCCEEEECCC-CHHHHHHHHHHH
Confidence 99999998776444 456665555443
No 340
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=63.65 E-value=60 Score=30.10 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=50.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC-CC--HHHHHHHHHHHHhCCCCeEEcCCCCCHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP-GG--ISDALACLHALAATGTPAILRLPESCPTWA 150 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~-~~--~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i 150 (355)
..|-+.++..- .-++.-+++-+....+..+|||+|--=|---. .. ..---++++.+...+.+++.-=.=.+|.+.
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a 159 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQA 159 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHH
Confidence 34444454422 45556788999999999999999987664431 11 111123444443345555442222358899
Q ss_pred HHHHhcCCCeEee
Q 018508 151 KKALDLGPQGVMF 163 (355)
Q Consensus 151 ~~aLdaGa~GImv 163 (355)
.+++++||+.|+|
T Consensus 160 ~~al~~GA~aVVV 172 (192)
T PF04131_consen 160 AKALELGAHAVVV 172 (192)
T ss_dssp HHHHHTT-SEEEE
T ss_pred HHHHhcCCeEEEE
Confidence 9999999999887
No 341
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=63.48 E-value=1.4e+02 Score=28.35 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=51.2
Q ss_pred HHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeC----C----C-CC--CC-HHHHHHHHHHHHhCCCCeEEcCCCCC
Q 018508 80 LQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDM----E----H-GP--GG-ISDALACLHALAATGTPAILRLPESC 146 (355)
Q Consensus 80 L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDl----E----h-~~--~~-~~~a~~~i~a~~~~g~~~iVRV~~~~ 146 (355)
||.|....+..++.. .-..++.+..+|+|.|=+=. . + .+ .+ .+.++.+...........+++.....
T Consensus 8 lRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~ 87 (263)
T cd07943 8 LRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGT 87 (263)
T ss_pred CCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccC
Confidence 456666556554443 33466777888988765431 0 0 01 12 22222222222112223455433334
Q ss_pred HHHHHHHHhcCCCeEeecCC-CCHHHHHHHHHHcC
Q 018508 147 PTWAKKALDLGPQGVMFPMI-DSPEAAKEAVSYCR 180 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImvP~V-esaeea~~vv~a~~ 180 (355)
...+.++++.|++.|-+..- +....++.+++.++
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak 122 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAAR 122 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHH
Confidence 67789999999997665432 22334444554443
No 342
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=63.39 E-value=1e+02 Score=30.49 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=53.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHH--------HHHHHHHH-hCCCCeEEcCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDA--------LACLHALA-ATGTPAILRLPE 144 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a--------~~~i~a~~-~~g~~~iVRV~~ 144 (355)
.-|.|.|+. |..+-..+++-++++-..|||.|.+- |--|.+..+. -+.|++++ ....|+++.+.-
T Consensus 10 ~g~a~m~kg-----gvimdv~~~~~a~iae~~g~~~v~~~-~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Ri 83 (293)
T PRK04180 10 RGFAEMLKG-----GVIMDVVNAEQAKIAEEAGAVAVMAL-ERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARI 83 (293)
T ss_pred HHHHHHhcC-----CeEEEeCCHHHHHHHHHhChHHHHHc-cCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehh
Confidence 345566655 55667789999999999999987763 2223332211 12333433 345565544333
Q ss_pred CCHHHHHHHHhcCCCeEeecCCCCH
Q 018508 145 SCPTWAKKALDLGPQGVMFPMIDSP 169 (355)
Q Consensus 145 ~~~~~i~~aLdaGa~GImvP~Vesa 169 (355)
......+.+..+|++-|=--.+.++
T Consensus 84 gh~~Ea~~L~~~GvDiID~Te~lrp 108 (293)
T PRK04180 84 GHFVEAQILEALGVDYIDESEVLTP 108 (293)
T ss_pred hHHHHHHHHHHcCCCEEeccCCCCc
Confidence 3345567778889988754455555
No 343
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=63.20 E-value=1.4e+02 Score=28.43 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCceEEEEEE-ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCC----------CCCCCCHHHHHHHH------HHHHH
Q 018508 210 EEELLIMCQV-ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGY----------LWDPGHRKVREMMR------VAEKG 272 (355)
Q Consensus 210 n~~i~vi~mI-ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~----------~~~~~~p~v~~ai~------~iv~a 272 (355)
|-.+.+++-. .+-+||..+.|=++.=+..+=. |++|.+-...+ ..+.+..++...-+ .++..
T Consensus 123 nFkvPFvCG~rdlGEALRRI~EGAAMIRtkGea-gTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~ 201 (296)
T KOG1606|consen 123 NFKVPFVCGCRDLGEALRRIREGAAMIRTKGEA-GTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQ 201 (296)
T ss_pred cCcCceeeccccHHHHHHHHhhchhhheecccc-CCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHH
Confidence 3334444333 4566777777766543333333 77776654321 11222233322211 34667
Q ss_pred HHhCCCceeeccc----CCchhHHHHHHCCCCEEEecchH
Q 018508 273 VLGGGKAYLAGFA----MPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 273 a~a~g~~~~g~~~----~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+++.|+.+...++ .+|+++..+.++|++++.+|+.+
T Consensus 202 t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgi 241 (296)
T KOG1606|consen 202 TKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGI 241 (296)
T ss_pred HHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEecccc
Confidence 7778876544432 35788889999999999888654
No 344
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=63.12 E-value=1.5e+02 Score=28.85 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=49.4
Q ss_pred CCcEEEEEEecCCHHHH----HHhhhcCCcEEEEeCCCCCC--------------CHHHHHHHHHHHH-hCCCCeEEcCC
Q 018508 83 NETLYGLFLLSFSPTLA----EISGLAGYDFVVVDMEHGPG--------------GISDALACLHALA-ATGTPAILRLP 143 (355)
Q Consensus 83 G~~~~gl~v~~~sp~~~----e~aa~~G~D~vilDlEh~~~--------------~~~~a~~~i~a~~-~~g~~~iVRV~ 143 (355)
.+..+..-+.+++|+.+ +.+..+|+|.|=|.+-. |. +.+.+.+++.++. ..+.++.|++.
T Consensus 61 ~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gc-P~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir 139 (319)
T TIGR00737 61 DETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGC-PVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR 139 (319)
T ss_pred ccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCC-CHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 34556667778888533 44556899998787643 21 2234445666654 35678888874
Q ss_pred CC------CH-HHHHHHHhcCCCeEee
Q 018508 144 ES------CP-TWAKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~~------~~-~~i~~aLdaGa~GImv 163 (355)
.. +. ..++.+.++|++.|.+
T Consensus 140 ~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 140 IGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred cccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 21 12 2346677889999877
No 345
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=63.07 E-value=99 Score=26.61 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
.+++.|+.-. +.......+ ....+.+....+|.|++|+.....+--+....++.. ....++++=....+......+
T Consensus 15 ~l~~~L~~~~--~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~ 91 (204)
T PRK09958 15 AIRNLLIKND--IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR-QYSGIIIIVSAKNDHFYGKHC 91 (204)
T ss_pred HHHHHHhcCC--CEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHH
Confidence 4666665322 222222334 345566666789999999976543333333333321 123344444455556677889
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+..|+++++..-+ +.+++...++.+.
T Consensus 92 ~~~ga~~~i~kp~-~~~~l~~~i~~~~ 117 (204)
T PRK09958 92 ADAGANGFVSKKE-GMNNIIAAIEAAK 117 (204)
T ss_pred HHCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 9999999887654 5667776666654
No 346
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=63.05 E-value=69 Score=29.62 Aligned_cols=86 Identities=9% Similarity=-0.088 Sum_probs=60.0
Q ss_pred EecCCHHHHHHhhhcCCcEEEEeC-CCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH-hcCCCeEeecCC
Q 018508 91 LLSFSPTLAEISGLAGYDFVVVDM-EHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKAL-DLGPQGVMFPMI 166 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vilDl-Eh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL-daGa~GImvP~V 166 (355)
+.+.+++.++.+..+|+|++=|-. +.+| .+.++++.+...+...-..+.|=++. ++..+.+.+ ..|.+.|.+=--
T Consensus 6 CGit~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~-~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 6 CGFTTIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNP-DLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred cCCCcHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCC-CHHHHHHHHHhCCCCEEEECCC
Confidence 456799999999999999976655 3455 57888888887654222234443443 456666655 478899999888
Q ss_pred CCHHHHHHHHH
Q 018508 167 DSPEAAKEAVS 177 (355)
Q Consensus 167 esaeea~~vv~ 177 (355)
++++.++++..
T Consensus 85 e~~~~~~~l~~ 95 (207)
T PRK13958 85 ESIDFIQEIKK 95 (207)
T ss_pred CCHHHHHHHhh
Confidence 88887776653
No 347
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=62.99 E-value=1.4e+02 Score=29.60 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHhhhcCCcEEEEeCCCC
Q 018508 97 TLAEISGLAGYDFVVVDMEHG 117 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~ 117 (355)
..++.+..+|||.|-|-+-|+
T Consensus 156 ~aA~~a~~aGfDgVeih~ahG 176 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANG 176 (338)
T ss_pred HHHHHHHHcCCCEEEEccccc
Confidence 456777889999999999995
No 348
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=62.74 E-value=13 Score=41.55 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred eEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc----cC
Q 018508 160 GVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA----VD 235 (355)
Q Consensus 160 GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa----vp 235 (355)
..+|-|++++.++.++.-.+|.. |....+ .....+.|++..||.+.|+|..+|+. .|
T Consensus 366 ~yIISmt~~~sdvL~v~~L~k~~--gl~~~~-----------------~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p 426 (794)
T PF00311_consen 366 RYIISMTESASDVLEVLLLAKEA--GLADGG-----------------DGGCRLDVVPLFETIDDLENAPDIMEELLSNP 426 (794)
T ss_dssp EEEECT--SCHHHHHHHHHHHCT--T---SS--------------------S---EEEEE-SHHHHHCHHHHHHHHCCSH
T ss_pred HheeeCCCChHHHHHHHHHHHHh--CCCccc-----------------ccccccCCCCCCCCHHHHHhHHHHHHHHHcCH
Confidence 57999999999999999888864 210000 00135789999999999999999984 11
Q ss_pred ----------CccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce
Q 018508 236 ----------GVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 236 ----------gVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
+.=-||+|-.|=.-+-|+.. ..-.+..+.+++.+.|+++|+++
T Consensus 427 ~yr~~l~~~~~~QeVMlGYSDS~KDgG~la--a~w~ly~Aq~~L~~v~~~~gV~l 479 (794)
T PF00311_consen 427 AYRAHLKARGNRQEVMLGYSDSNKDGGYLA--ANWALYKAQEALVAVARKHGVKL 479 (794)
T ss_dssp HHHHHCTT---EEEEEEECCCHHHHC-HHH--HHHHHHHHHHHHHHHHHCCT-EE
T ss_pred HHHHHHhcCcceEEEEeccccccccccHHH--HHHHHHHHHHHHHHHHHHcCCeE
Confidence 25579999999887777531 23467889999999999998773
No 349
>PLN02858 fructose-bisphosphate aldolase
Probab=62.70 E-value=3.3e+02 Score=32.56 Aligned_cols=216 Identities=17% Similarity=0.197 Sum_probs=115.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHH-HHHhCCCCeEEcCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GGISDALACLH-ALAATGTPAILRLPES 145 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~-a~~~~g~~~iVRV~~~ 145 (355)
+.+-+.-++++..++.|. ..+-+. ++.+-..+...|+ ..-.+. ...+ +..++. .++.+..++.|=....
T Consensus 1103 ~~~l~~A~~~~yav~afn-~~n~e~~~avi~aAe~~~sPvIl-~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg 1179 (1378)
T PLN02858 1103 KELLLNAEKGGYAVGAFN-VYNLEGIEAVVAAAEAEKSPAIL-QVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHG 1179 (1378)
T ss_pred HHHHHHHHHCCcEEEEEE-eCCHHHHHHHHHHHHHhCCCEEE-ECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCC
Confidence 334444456788888884 445443 3455566777554 333221 2334 444443 4456778888888766
Q ss_pred -CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE
Q 018508 146 -CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV 219 (355)
Q Consensus 146 -~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI 219 (355)
+.+.+.++++.|...||+ |+=++.+.-+++++.++.. |..- -+-.|. +....+.+...-.-
T Consensus 1180 ~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~-----gv~V----EaElG~----v~g~e~~~~~~~~~ 1246 (1378)
T PLN02858 1180 TSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSK-----GLMV----EAELGR----LSGTEDGLTVEEYE 1246 (1378)
T ss_pred CCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHc-----CCEE----EEEecc----cCCccCCccccccc
Confidence 457899999999988885 7778888889999988742 1110 000110 00000000000000
Q ss_pred ccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHH-HHHHHHHHHHHHhCCCce-eec-ccCCchhHHHHHH
Q 018508 220 ESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKV-REMMRVAEKGVLGGGKAY-LAG-FAMPHDAPLEMKS 296 (355)
Q Consensus 220 ET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v-~~ai~~iv~aa~a~g~~~-~g~-~~~d~~~a~~~~~ 296 (355)
....=.+.+.+++.--|||.+-+.-+-- =|.... ..|.+ .+.+++|.++....+++. +.| -..+.++.++.++
T Consensus 1247 ~~~T~p~~a~~Fv~~TgvD~LAvaiGt~---HG~Y~~-~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~ 1322 (1378)
T PLN02858 1247 AKLTDVDQAKEFIDETGIDALAVCIGNV---HGKYPA-SGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIE 1322 (1378)
T ss_pred cCCCCHHHHHHHHHhcCCcEEeeecccc---cccCCC-CCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHH
Confidence 0112235666777555899765532211 122111 01222 233455544543333431 111 2223477889999
Q ss_pred CCCCEEEecchHH
Q 018508 297 RGYHMVSGAVDVG 309 (355)
Q Consensus 297 ~G~~~vs~~~D~~ 309 (355)
.|+.-+.+++|..
T Consensus 1323 ~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1323 NGVRKFNVNTEVR 1335 (1378)
T ss_pred cCCeEEEeCHHHH
Confidence 9999999999863
No 350
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=62.62 E-value=30 Score=31.37 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=50.9
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeE--EcCCCCCHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAI--LRLPESCPTWAKK 152 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~i--VRV~~~~~~~i~~ 152 (355)
.|++.+...-..+++|++-.-.++.+.+...|+|+|=|--.+ +.+.++.. +. ..+...+ +.+.......+.+
T Consensus 42 ~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e---~~~~~~~l-~~--~~~~~~i~~i~~~~~~~~~~~~ 115 (203)
T cd00405 42 EIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE---SPEYCAQL-RA--RLGLPVIKAIRVKDEEDLEKAA 115 (203)
T ss_pred HHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC---CHHHHHHH-Hh--hcCCcEEEEEecCChhhHHHhh
Confidence 344444333467888888776677788889999999774333 22222222 11 1255556 6666554444445
Q ss_pred HHhcCCCeEeec
Q 018508 153 ALDLGPQGVMFP 164 (355)
Q Consensus 153 aLdaGa~GImvP 164 (355)
+...|++.|+++
T Consensus 116 ~~~~~aD~il~d 127 (203)
T cd00405 116 AYAGEVDAILLD 127 (203)
T ss_pred hccccCCEEEEc
Confidence 666799999874
No 351
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=62.46 E-value=40 Score=33.97 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=50.1
Q ss_pred eEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCc-c-ccccCCCceEEEEEEccHHHHHHHHHHhccCCc
Q 018508 160 GVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDE-G-YLSNYEEELLIMCQVESEEGVKRAEDIAAVDGV 237 (355)
Q Consensus 160 GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~-~-y~~~~n~~i~vi~mIET~~av~nieeIaavpgV 237 (355)
+..+ .|.+.++.+.+.+..+..+ ........|...+ | .++..+....+++-+.|++-..-+-+++.. |+
T Consensus 68 ~~~v-~i~~~~~e~~a~~~~~~~~-------~viv~~~dW~iIPlEnlIA~~~~~~~l~a~v~~~~eA~~a~~~LE~-G~ 138 (344)
T PRK02290 68 GAYV-EIRDKEDEEFAAELAKEVD-------YVIVEGRDWTIIPLENLIADLGQSGKIIAGVADAEEAKLALEILEK-GV 138 (344)
T ss_pred EEEE-EECCHHHHHHHHHhhccCC-------EEEEECCCCcEecHHHHHhhhcCCceEEEEeCCHHHHHHHHHHhcc-CC
Confidence 3344 4567777777766655421 1112223454332 2 223235677899999999999999999975 89
Q ss_pred cEEEEChhhH
Q 018508 238 DCVQMGPLDL 247 (355)
Q Consensus 238 D~l~iGp~DL 247 (355)
|+|.+=+.|.
T Consensus 139 dGVvl~~~d~ 148 (344)
T PRK02290 139 DGVLLDPDDP 148 (344)
T ss_pred CeEEECCCCH
Confidence 9999977664
No 352
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=62.23 E-value=45 Score=32.02 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=51.9
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
+-+|.-+..+...|+|.|++=.. ..+.+++..++..+..-|..++|=|.. ...+.+++++|+.-|.|
T Consensus 111 Iid~~QI~ea~~~GADavLLI~~--~L~~~~l~~l~~~a~~lGle~LVEVh~--~~El~~a~~~ga~iiGI 177 (247)
T PRK13957 111 ILDEIQIREARAFGASAILLIVR--ILTPSQIKSFLKHASSLGMDVLVEVHT--EDEAKLALDCGAEIIGI 177 (247)
T ss_pred cCCHHHHHHHHHcCCCEEEeEHh--hCCHHHHHHHHHHHHHcCCceEEEECC--HHHHHHHHhCCCCEEEE
Confidence 44777777777899999876433 356678888888888899999988764 66789999999986655
No 353
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=62.08 E-value=1.7e+02 Score=28.93 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=47.1
Q ss_pred CHHHH-HHhhhcCCcEEEEeCCC--------CCCCHHHHHHHHHHHHh-CCCCeEEcCCCC--CHHHHHHHHhcCCCeEe
Q 018508 95 SPTLA-EISGLAGYDFVVVDMEH--------GPGGISDALACLHALAA-TGTPAILRLPES--CPTWAKKALDLGPQGVM 162 (355)
Q Consensus 95 sp~~~-e~aa~~G~D~vilDlEh--------~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~--~~~~i~~aLdaGa~GIm 162 (355)
+++.+ +.....++|++-|.+.. +..+.+...+.++.+.. ...|++|+..+. ....++++.++|+++|.
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAID 207 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 44433 34445789999998743 12244444466666543 478999998654 35678889999999999
Q ss_pred ecC
Q 018508 163 FPM 165 (355)
Q Consensus 163 vP~ 165 (355)
+--
T Consensus 208 vsG 210 (326)
T cd02811 208 VAG 210 (326)
T ss_pred ECC
Confidence 743
No 354
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.99 E-value=56 Score=30.34 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc-cCCccEEEECh
Q 018508 166 IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA-VDGVDCVQMGP 244 (355)
Q Consensus 166 Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa-vpgVD~l~iGp 244 (355)
..+++++..+++++... |. ..+-+-.-|+.+++.++++.+ .| .+.+|.
T Consensus 12 ~~~~~~a~~ia~al~~g--Gi--------------------------~~iEit~~tp~a~~~I~~l~~~~~---~~~vGA 60 (201)
T PRK06015 12 IDDVEHAVPLARALAAG--GL--------------------------PAIEITLRTPAALDAIRAVAAEVE---EAIVGA 60 (201)
T ss_pred cCCHHHHHHHHHHHHHC--CC--------------------------CEEEEeCCCccHHHHHHHHHHHCC---CCEEee
Confidence 46889999999888531 21 134455579999999999985 34 477776
Q ss_pred h--------hHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecc
Q 018508 245 L--------DLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 245 ~--------DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
+ +.+.+.|..+- -.|.+ -..+++.|+++++.++-|. .++.++....+.|++.+=+-+
T Consensus 61 GTVl~~e~a~~ai~aGA~Fi-vSP~~---~~~vi~~a~~~~i~~iPG~-~TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 61 GTILNAKQFEDAAKAGSRFI-VSPGT---TQELLAAANDSDVPLLPGA-ATPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred EeCcCHHHHHHHHHcCCCEE-ECCCC---CHHHHHHHHHcCCCEeCCC-CCHHHHHHHHHCCCCEEEECC
Confidence 3 33445565321 01111 1446678899998866554 567777788899999864433
No 355
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=61.94 E-value=23 Score=34.23 Aligned_cols=135 Identities=20% Similarity=0.167 Sum_probs=75.0
Q ss_pred hHHHHHHHcCC-cEEEEEEecCCHHHHHH-hhhcC---------CcEEEEeCCCCCC--CHHHHHHHHHHHHhCCCCeEE
Q 018508 74 ESLKYRLQSNE-TLYGLFLLSFSPTLAEI-SGLAG---------YDFVVVDMEHGPG--GISDALACLHALAATGTPAIL 140 (355)
Q Consensus 74 n~lk~~L~~G~-~~~gl~v~~~sp~~~e~-aa~~G---------~D~vilDlEh~~~--~~~~a~~~i~a~~~~g~~~iV 140 (355)
+++.++++..+ .++++-=..|.-+.+++ +..+| .|.++|--.|-.. +...+...++. ..+....|
T Consensus 104 ~~~v~~~~~~~~~i~~TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~--~~~~~~~I 181 (265)
T TIGR00078 104 RKYVEAARGTNVRIADTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARA--AAPFALKI 181 (265)
T ss_pred HHHHHHhcCCCeEEEecCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHH--hCCCCCeE
Confidence 45555554322 12222223444444543 44444 4788877778521 22222222222 12212223
Q ss_pred cCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 141 RLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 141 RV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
=|.-.+.++++.+++.|+|.|++-.+ ++++++++++.++.. -.+..+--|
T Consensus 182 gvev~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~~~----------------------------ipi~AsGGI- 231 (265)
T TIGR00078 182 EVEVESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLKGR----------------------------VLLEASGGI- 231 (265)
T ss_pred EEEeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcCC----------------------------CcEEEECCC-
Confidence 33333567889999999999999886 579999998875310 011111113
Q ss_pred cHHHHHHHHHHhccCCccEEEECh
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iGp 244 (355)
-.+|+.++++. |+|++.+|.
T Consensus 232 ---~~~ni~~~a~~-Gvd~Isvga 251 (265)
T TIGR00078 232 ---TLDNLEEYAET-GVDVISSGA 251 (265)
T ss_pred ---CHHHHHHHHHc-CCCEEEeCH
Confidence 25788888874 899999965
No 356
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=61.89 E-value=84 Score=31.37 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHH
Q 018508 147 PTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVK 226 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ 226 (355)
+.....+-++|.-|++-.--.+++++++.++.++.. .+.+ .||. -++.+...+.--+
T Consensus 17 ~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l-~tdk----------PfGV------------nl~~~~~~~~~~~ 73 (320)
T cd04743 17 AEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL-LGDK----------PWGV------------GILGFVDTELRAA 73 (320)
T ss_pred HHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh-ccCC----------CeEE------------EEeccCCCcchHH
Confidence 566778889999999888888999999998887652 0111 1221 1222211211224
Q ss_pred HHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEE
Q 018508 227 RAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVS 303 (355)
Q Consensus 227 nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs 303 (355)
.++-|++ .++..|+++- |. |. . ++..+++|+++.. ...++..++++.+.|.+.++
T Consensus 74 ~l~vi~e-~~v~~V~~~~-------G~------P~------~-~~~lk~~Gi~v~~-~v~s~~~A~~a~~~GaD~vV 128 (320)
T cd04743 74 QLAVVRA-IKPTFALIAG-------GR------PD------Q-ARALEAIGISTYL-HVPSPGLLKQFLENGARKFI 128 (320)
T ss_pred HHHHHHh-cCCcEEEEcC-------CC------hH------H-HHHHHHCCCEEEE-EeCCHHHHHHHHHcCCCEEE
Confidence 5665555 3688887763 22 21 1 1456677887553 45677888999999999765
No 357
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=61.88 E-value=90 Score=29.39 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCceeecccCCchhHHHHHHCCCCEE
Q 018508 268 VAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMV 302 (355)
Q Consensus 268 ~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~v 302 (355)
++++.|+.++++++-|+ .++.++...+++|++.+
T Consensus 97 ev~~~a~~~~ip~~PG~-~TptEi~~Ale~G~~~l 130 (211)
T COG0800 97 EVAKAANRYGIPYIPGV-ATPTEIMAALELGASAL 130 (211)
T ss_pred HHHHHHHhCCCcccCCC-CCHHHHHHHHHcChhhe
Confidence 35578888998876665 45667777889999864
No 358
>PRK10693 response regulator of RpoS; Provisional
Probab=61.78 E-value=82 Score=30.47 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=53.9
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAV 176 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv 176 (355)
...+.+....+|.|++|+.-...+--++...++.. ....++++=....+...+.++++.|++..+.=-+.+.+++...+
T Consensus 8 ~al~~l~~~~pDlVL~D~~mp~~~Gle~~~~ir~~-~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i 86 (303)
T PRK10693 8 DALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNR-GDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMV 86 (303)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHH
Confidence 34566666779999999887655544444444432 22345555555556677888999999887664466677777766
Q ss_pred HHcC
Q 018508 177 SYCR 180 (355)
Q Consensus 177 ~a~~ 180 (355)
..+.
T Consensus 87 ~~~l 90 (303)
T PRK10693 87 FACL 90 (303)
T ss_pred HHHh
Confidence 5543
No 359
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=61.53 E-value=1.5e+02 Score=28.27 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred HHHHHhhhcCCcEEEEeCCCC---CCCHHHHHHHHHHH---HhCCCCeEEcCCCCCHH----HHHHHHhcCCCeEee--c
Q 018508 97 TLAEISGLAGYDFVVVDMEHG---PGGISDALACLHAL---AATGTPAILRLPESCPT----WAKKALDLGPQGVMF--P 164 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~---~~~~~~a~~~i~a~---~~~g~~~iVRV~~~~~~----~i~~aLdaGa~GImv--P 164 (355)
+.++.+...|.|.+++=.--| ..+.++-.++++.+ ...+.++++-|...+.. .++.+-++|+++||+ |
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 456777788999999876544 35555555555443 23457889999887765 357788899999753 5
Q ss_pred CC--CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc----cHHHHHHHHHHhccCCcc
Q 018508 165 MI--DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE----SEEGVKRAEDIAAVDGVD 238 (355)
Q Consensus 165 ~V--esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE----T~~av~nieeIaavpgVD 238 (355)
+. -|.+++.+..+.+--. .+-..++=.+- ..--.+.+.+|+..|.|-
T Consensus 106 ~~~~~s~~~l~~y~~~ia~~---------------------------~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~ 158 (289)
T PF00701_consen 106 YYFKPSQEELIDYFRAIADA---------------------------TDLPIIIYNNPARTGNDLSPETLARLAKIPNVV 158 (289)
T ss_dssp TSSSCCHHHHHHHHHHHHHH---------------------------SSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEE
T ss_pred ccccchhhHHHHHHHHHHhh---------------------------cCCCEEEEECCCccccCCCHHHHHHHhcCCcEE
Confidence 43 3455544333222100 00111222221 122456788888899998
Q ss_pred EEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecch
Q 018508 239 CVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAVD 307 (355)
Q Consensus 239 ~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~D 307 (355)
++=....|+. .+ .++...+. .+.. .+.+........+..|.+++..+.-
T Consensus 159 giK~s~~~~~------------~~----~~~~~~~~-~~~~---v~~G~d~~~~~~l~~G~~G~is~~~ 207 (289)
T PF00701_consen 159 GIKDSSGDLE------------RL----IQLLRAVG-PDFS---VFCGDDELLLPALAAGADGFISGLA 207 (289)
T ss_dssp EEEESSSBHH------------HH----HHHHHHSS-TTSE---EEESSGGGHHHHHHTTSSEEEESGG
T ss_pred EEEcCchhHH------------HH----HHHhhhcc-cCee---eeccccccccccccccCCEEEEccc
Confidence 8887777661 11 22222221 1222 2333444455667899998876653
No 360
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.39 E-value=59 Score=31.93 Aligned_cols=73 Identities=11% Similarity=-0.038 Sum_probs=52.5
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCC-CCCHHHHHHHHhcCCCeEeecC
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLP-ESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~-~~~~~~i~~aLdaGa~GImvP~ 165 (355)
+-|-..+.+.++.+...|+|.|.+| .++.+++++.+..++.....+.+=+. +.+...+......|+|.|.+=.
T Consensus 202 IeVEv~tl~ea~eal~~gaDiI~LD----nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 202 CEVEVDSLEQLDEVLAEGAELVLLD----NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred EEEEcCCHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 5566688888899999999999999 44567777776654333333334343 3567889999999999988644
No 361
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=61.39 E-value=1.4e+02 Score=27.60 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCHH-HHHHhhhcCCcE-EEEeCCCCC----CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC-
Q 018508 94 FSPT-LAEISGLAGYDF-VVVDMEHGP----GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI- 166 (355)
Q Consensus 94 ~sp~-~~e~aa~~G~D~-vilDlEh~~----~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V- 166 (355)
.+|. .++.....|+|. +++|+.-.. .+.+...++.+ ..+.++++==.-.+...+.++++.|+++|++-..
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~---~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~ 106 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAE---ECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAA 106 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 3554 567777889985 778887652 23333333333 3445555411112356788889999999988653
Q ss_pred -CCHHHHHHHHHH
Q 018508 167 -DSPEAAKEAVSY 178 (355)
Q Consensus 167 -esaeea~~vv~a 178 (355)
++++-++++++.
T Consensus 107 l~~~~~~~~~~~~ 119 (232)
T TIGR03572 107 LENPDLIEEAARR 119 (232)
T ss_pred hcCHHHHHHHHHH
Confidence 556666666654
No 362
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=61.28 E-value=1.9e+02 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=22.8
Q ss_pred ceEEEEEEccHHHHHHHHHHhccCCccEEEEChh
Q 018508 212 ELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPL 245 (355)
Q Consensus 212 ~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~ 245 (355)
++.|++.=--..|.+-+..|+. |.|+|++|..
T Consensus 276 ~i~vi~dGGIr~g~Di~kaLal--GA~~V~iGr~ 307 (351)
T cd04737 276 RVPIIFDSGVRRGEHVFKALAS--GADAVAVGRP 307 (351)
T ss_pred CCeEEEECCCCCHHHHHHHHHc--CCCEEEECHH
Confidence 3556666555666666777774 8999999994
No 363
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=61.14 E-value=88 Score=32.54 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=47.9
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V 166 (355)
+....+.+..+|.|+|+||--.+....+ .++++-++ ..+...++==|-....+.+.+.++|+||+-|=|=
T Consensus 252 dK~rl~ll~~aGvdvviLDSSqGnS~~q--iemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMG 322 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVILDSSQGNSIYQ--LEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMG 322 (503)
T ss_pred hhHHHHHhhhcCCcEEEEecCCCcchhH--HHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccc
Confidence 4567788999999999999998853222 23444433 3444444444445567788899999999888773
No 364
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=60.99 E-value=1.2e+02 Score=26.73 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=55.4
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH-HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT-LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~-~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..++..|..-...+ . ...+.. ..+.+....+|.+++|++....+--+....++.. ....+.++=....+......
T Consensus 14 ~~l~~~L~~~g~~v--~-~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~-~~~~pii~ls~~~~~~~~~~ 89 (223)
T PRK10816 14 HHLKVQLQDAGHQV--D-AAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVLTARESWQDKVE 89 (223)
T ss_pred HHHHHHHHHCCCEE--E-EECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc-CCCCCEEEEEcCCCHHHHHH
Confidence 34555665333222 2 233433 4455666779999999987644433333333321 12344444334445566778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+++.|+++.+.--+ +.+++...++.+
T Consensus 90 ~l~~Ga~d~l~kp~-~~~eL~~~i~~~ 115 (223)
T PRK10816 90 VLSAGADDYVTKPF-HIEEVMARMQAL 115 (223)
T ss_pred HHHcCCCeeEeCCC-CHHHHHHHHHHH
Confidence 99999988665433 456665555544
No 365
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.88 E-value=1.8e+02 Score=28.99 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=93.3
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCe--EEcCCCCCHHHHHHHHhcCC--CeEee----cC
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPA--ILRLPESCPTWAKKALDLGP--QGVMF----PM 165 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~--iVRV~~~~~~~i~~aLdaGa--~GImv----P~ 165 (355)
-+..+++.+...|.=.++.-+ +.++.....+.....+..+ -|.+...+...+..++++|+ +.|.+ |+
T Consensus 49 iN~~LA~~a~~~G~~~~~~k~-----~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh 123 (326)
T PRK05458 49 IDEKIAEWLAENGYFYIMHRF-----DPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGH 123 (326)
T ss_pred hHHHHHHHHHHcCCEEEEecC-----CHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc
Confidence 366778888888888888772 3344444444433223222 23333333456778899965 98887 55
Q ss_pred CCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE-EEccHHHHHHHHHHhccCCccEEEECh
Q 018508 166 IDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC-QVESEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 166 Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~-mIET~~av~nieeIaavpgVD~l~iGp 244 (355)
.+...+ +++.++.. -..+.|++ -|-|++...++.+ -|+|++.+|-
T Consensus 124 ~~~~~e---~I~~ir~~---------------------------~p~~~vi~g~V~t~e~a~~l~~----aGad~i~vg~ 169 (326)
T PRK05458 124 SDSVIN---MIQHIKKH---------------------------LPETFVIAGNVGTPEAVRELEN----AGADATKVGI 169 (326)
T ss_pred hHHHHH---HHHHHHhh---------------------------CCCCeEEEEecCCHHHHHHHHH----cCcCEEEECC
Confidence 544444 34444311 01245666 4889998888776 2789988763
Q ss_pred hhHHhhcC-CCCCCCCHHH-HHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEecc
Q 018508 245 LDLSASMG-YLWDPGHRKV-REMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 245 ~DLs~slG-~~~~~~~p~v-~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
.-=+.... .......|.+ +.++.++.+++ .+++ -|++ .++.++.+.+.+|.+.+.+|.
T Consensus 170 ~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI-~~~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 170 GPGKVCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGI-RTHGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CCCcccccccccCCCCCccHHHHHHHHHHHc---CCCEEEeCCC-CCHHHHHHHHHhCCCEEEech
Confidence 32222110 0000112211 12344444332 3332 2233 356777788899999999984
No 366
>PLN02334 ribulose-phosphate 3-epimerase
Probab=60.85 E-value=1e+02 Score=28.55 Aligned_cols=90 Identities=22% Similarity=0.185 Sum_probs=51.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcC-CcEEEE-eCCCCCCCH---HHHHHHHHHHHhC-CCCeEEcCCCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAG-YDFVVV-DMEHGPGGI---SDALACLHALAAT-GTPAILRLPESC 146 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G-~D~vil-DlEh~~~~~---~~a~~~i~a~~~~-g~~~iVRV~~~~ 146 (355)
....++++...-.+|+.++-.+ .+.++.....| .|+|.+ ..+.+.... ....+.++.+... ...+++=+.+..
T Consensus 105 ~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~ 184 (229)
T PLN02334 105 HRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVG 184 (229)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCC
Confidence 3333444444457899887533 44455554543 998744 555432211 1222334443322 223455566778
Q ss_pred HHHHHHHHhcCCCeEee
Q 018508 147 PTWAKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~~~i~~aLdaGa~GImv 163 (355)
...+..+.++|+++|++
T Consensus 185 ~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 185 PSTIDKAAEAGANVIVA 201 (229)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88999999999998764
No 367
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=60.63 E-value=1.2e+02 Score=26.61 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=55.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSP-TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp-~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|......+. ...+. ...+.+....+|.|++|..-...+--.....++. ....++++=....+......
T Consensus 16 ~~l~~~l~~~~~~v~---~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~--~~~~~ii~l~~~~~~~~~~~ 90 (221)
T PRK10766 16 ARLQGYFEQEGYTVS---EAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRS--RSTVGIILVTGRTDSIDRIV 90 (221)
T ss_pred HHHHHHHHHcCCEEE---EECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHh--CCCCCEEEEECCCcHHHHHH
Confidence 346666654333222 22333 3445566677999999987644443333333433 23455555444555666778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++.+|+++++.--+ +.+++...+..
T Consensus 91 ~l~~Ga~d~l~kP~-~~~~L~~~i~~ 115 (221)
T PRK10766 91 GLEMGADDYVTKPL-ELRELLVRVKN 115 (221)
T ss_pred HHHcCCCcEEeCCC-CHHHHHHHHHH
Confidence 89999988765444 45565544443
No 368
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=60.50 E-value=1.3e+02 Score=26.97 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=53.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..+++.|......+... .+.....+.+....+|.|++|......+--++...++. ....++++=....+......+
T Consensus 15 ~~l~~~L~~~g~~v~~~--~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~--~~~~pii~l~~~~~~~~~~~~ 90 (240)
T PRK10701 15 SLIAAYLAKHDIDVTVE--PRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRP--KWQGPIVLLTSLDSDMNHILA 90 (240)
T ss_pred HHHHHHHHHcCCEEEEe--CCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHh--cCCCCEEEEECCCCHHHHHHH
Confidence 34566665433222211 23334556666677999999987654443444444443 223333332223344556679
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHH
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVS 177 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~ 177 (355)
+++|++.++.--++ .+++...++
T Consensus 91 ~~~Ga~d~l~kP~~-~~~l~~~i~ 113 (240)
T PRK10701 91 LEMGACDYILKTTP-PAVLLARLR 113 (240)
T ss_pred HHcCCCEEEECCCC-HHHHHHHHH
Confidence 99999886655444 444443333
No 369
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=60.50 E-value=1.9e+02 Score=29.11 Aligned_cols=94 Identities=18% Similarity=0.033 Sum_probs=56.5
Q ss_pred chHHHHHHHcCCcEEEEEEec--CCHHHHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHHHhCCCC--eEEcCCCCCH
Q 018508 73 PESLKYRLQSNETLYGLFLLS--FSPTLAEISGLAGYDF-VVVDMEHGPGGISDALACLHALAATGTP--AILRLPESCP 147 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~--~sp~~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~~~~g~~--~iVRV~~~~~ 147 (355)
...+++.+..-+..+..-+.. .++..++.+...|++. .+ .+..+++.+.. .|.. .+.-.....+
T Consensus 42 ~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~v-------as~~Ea~~lr~----aGi~~~~I~~l~~~~~ 110 (382)
T cd06811 42 ARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVA-------VDFKEARALHE----AGLPLGHVGHLVQIPR 110 (382)
T ss_pred HHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeE-------ecHHHHHHHHH----cCCCHHhEEEccCCCH
Confidence 345666664323334444444 3789999998999863 33 34455544332 3433 2332223346
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
..+..+++.+ +..+-|+|.++++++.+.++
T Consensus 111 ~el~~~v~~~---~~~i~V~s~~~l~~L~~~A~ 140 (382)
T cd06811 111 HQVPAVLAMR---PEVITVYSLEKAREISDAAV 140 (382)
T ss_pred HHHHHHHHcC---CCEEEECCHHHHHHHHHHHH
Confidence 6788888875 34577899999999887764
No 370
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=60.12 E-value=1.1e+02 Score=28.52 Aligned_cols=87 Identities=16% Similarity=0.040 Sum_probs=62.3
Q ss_pred EecCCHHHHHHhhhcCCcEE-EEeCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH-HhcCCCeEeecCC
Q 018508 91 LLSFSPTLAEISGLAGYDFV-VVDMEHGP--GGISDALACLHALAATGTPAILRLPESCPTWAKKA-LDLGPQGVMFPMI 166 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~v-ilDlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a-LdaGa~GImvP~V 166 (355)
|.+.+++.++.+..+|+|++ +|=-+.+| .+.++++.++.++.. -..+.|=+|.. ...+.++ -..+.+.|.+=--
T Consensus 7 CGlt~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~-~~~VgVf~n~~-~~~i~~i~~~~~ld~VQlHG~ 84 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPK-VKVVGVFVNES-IEEILEIAEELGLDAVQLHGD 84 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCC-CCEEEEECCCC-HHHHHHHHHhcCCCEEEECCC
Confidence 45679999999999999994 33334465 578889888877542 12345555553 4445554 4567899999999
Q ss_pred CCHHHHHHHHHHc
Q 018508 167 DSPEAAKEAVSYC 179 (355)
Q Consensus 167 esaeea~~vv~a~ 179 (355)
++++.++++....
T Consensus 85 e~~~~~~~l~~~~ 97 (208)
T COG0135 85 EDPEYIDQLKEEL 97 (208)
T ss_pred CCHHHHHHHHhhc
Confidence 9999999888764
No 371
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.92 E-value=93 Score=30.11 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEE--EEcc
Q 018508 144 ESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMC--QVES 221 (355)
Q Consensus 144 ~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~--mIET 221 (355)
-.+..++.++++.|++.|++=.+ ++++++++++.++... .++.+++ -| |
T Consensus 190 v~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~---------------------------~~i~i~AsGGI-~ 240 (272)
T cd01573 190 VDSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLA---------------------------PPVLLAAAGGI-N 240 (272)
T ss_pred cCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccC---------------------------CCceEEEECCC-C
Confidence 34567788899999999998444 4578888888765210 0122222 23 2
Q ss_pred HHHHHHHHHHhccCCccEEEECh
Q 018508 222 EEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 222 ~~av~nieeIaavpgVD~l~iGp 244 (355)
.+|+.++++. |+|+|++|.
T Consensus 241 ---~~ni~~~~~~-Gvd~I~vsa 259 (272)
T cd01573 241 ---IENAAAYAAA-GADILVTSA 259 (272)
T ss_pred ---HHHHHHHHHc-CCcEEEECh
Confidence 3888888874 899998876
No 372
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=59.82 E-value=1e+02 Score=30.62 Aligned_cols=98 Identities=24% Similarity=0.205 Sum_probs=56.5
Q ss_pred chHHHHHHHcCCcEEEEEEec-CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHH
Q 018508 73 PESLKYRLQSNETLYGLFLLS-FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAK 151 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~-~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~ 151 (355)
.+.+++.+..-+..+...+.. .++..++.+...|++.+. ..+..+++.+.. .|...++=.+...+..+.
T Consensus 20 i~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~------vas~~Ea~~~~~----aG~~~il~~~~~~~~~~~ 89 (374)
T cd06812 20 IARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPAT------VSTLKEAEAFAE----AGYRDILYAVGIAPAKLP 89 (374)
T ss_pred HHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEE------EccHHHHHHHHH----cCCCeeEEeCCCCHHHHH
Confidence 455666665423333333333 678888888888876433 234555555433 343333224445555555
Q ss_pred HHHhcCCCeE-eecCCCCHHHHHHHHHHcC
Q 018508 152 KALDLGPQGV-MFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 152 ~aLdaGa~GI-mvP~Vesaeea~~vv~a~~ 180 (355)
++..+-..++ +.+.|+|.++++.+.+.++
T Consensus 90 ~~~~l~~~~~~~~~~vds~~~l~~l~~~a~ 119 (374)
T cd06812 90 RVLALRRQGVNLTILLDSVEQAQAVAAFSR 119 (374)
T ss_pred HHHHHHhcCCceEEEECCHHHHHHHHHHHH
Confidence 5544322233 5678999999999988775
No 373
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=59.80 E-value=20 Score=31.96 Aligned_cols=88 Identities=19% Similarity=0.213 Sum_probs=52.6
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHH----HHHHHHHHhCCCCeEEcCCCCCHH
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDA----LACLHALAATGTPAILRLPESCPT 148 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a----~~~i~a~~~~g~~~iVRV~~~~~~ 148 (355)
+...|+.+.. ...+| +...+.+.++.+...|+||+++--=....+|+.. ...++.+...-..|++=+.+.++.
T Consensus 85 ~~~~r~~~~~-~~~ig--~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~ 161 (180)
T PF02581_consen 85 PAEARKLLGP-DKIIG--ASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITPE 161 (180)
T ss_dssp HHHHHHHHTT-TSEEE--EEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--TT
T ss_pred hHHhhhhccc-ceEEE--eecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCHH
Confidence 3445555543 34555 4577888899999999999998654332222211 112222222122566668888888
Q ss_pred HHHHHHhcCCCeEee
Q 018508 149 WAKKALDLGPQGVMF 163 (355)
Q Consensus 149 ~i~~aLdaGa~GImv 163 (355)
.+..+++.|++||-+
T Consensus 162 ~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 162 NIPELREAGADGVAV 176 (180)
T ss_dssp THHHHHHTT-SEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 899999999999865
No 374
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=59.51 E-value=38 Score=35.76 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=57.2
Q ss_pred cCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCH-HHHHHHHHHHHHHHhCCCceeecccC
Q 018508 208 NYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHR-KVREMMRVAEKGVLGGGKAYLAGFAM 286 (355)
Q Consensus 208 ~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p-~v~~ai~~iv~aa~a~g~~~~g~~~~ 286 (355)
..+++..|.+-|.+.+.++.++++.+ .|+|.|.+.. + ..|. .+.+.++++..... ....+.+|-..
T Consensus 227 d~~grL~V~~av~~~~~~~ra~~Lv~-aGvd~i~vd~-----a------~g~~~~~~~~i~~ir~~~~-~~~~V~aGnV~ 293 (502)
T PRK07107 227 DSSKRYVVGAGINTRDYAERVPALVE-AGADVLCIDS-----S------EGYSEWQKRTLDWIREKYG-DSVKVGAGNVV 293 (502)
T ss_pred hhccCeeeeeccChhhHHHHHHHHHH-hCCCeEeecC-----c------ccccHHHHHHHHHHHHhCC-CCceEEecccc
Confidence 34567888899988888999999886 4899999741 1 2232 23444544433221 12334555567
Q ss_pred CchhHHHHHHCCCCEEEec
Q 018508 287 PHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 287 d~~~a~~~~~~G~~~vs~~ 305 (355)
+++.++.+++.|.+++.+|
T Consensus 294 t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 294 DREGFRYLAEAGADFVKVG 312 (502)
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 7899999999999998663
No 375
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=59.35 E-value=36 Score=32.75 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=49.8
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
+-+|.-+..+...|+|.|++=.. ..+.+++..++..+..-|..++|=|.. ...+.+++++|+.-|.|
T Consensus 118 Iid~~QI~eA~~~GADaVLLI~~--~L~~~~l~~l~~~a~~lGle~lVEVh~--~~El~~al~~~a~iiGI 184 (254)
T PF00218_consen 118 IIDPYQIYEARAAGADAVLLIAA--ILSDDQLEELLELAHSLGLEALVEVHN--EEELERALEAGADIIGI 184 (254)
T ss_dssp --SHHHHHHHHHTT-SEEEEEGG--GSGHHHHHHHHHHHHHTT-EEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred CCCHHHHHHHHHcCCCEeehhHH--hCCHHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHHcCCCEEEE
Confidence 45788888888999999887544 456777888888888899999998864 67799999999975554
No 376
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=59.31 E-value=51 Score=33.58 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=45.5
Q ss_pred HHHhhhcCCcEEEEeCCCCC------------CCHHHHHHHHHHHHh-CCCCeEEcCCCCCH---HHHHHHHhcCCCeEe
Q 018508 99 AEISGLAGYDFVVVDMEHGP------------GGISDALACLHALAA-TGTPAILRLPESCP---TWAKKALDLGPQGVM 162 (355)
Q Consensus 99 ~e~aa~~G~D~vilDlEh~~------------~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~---~~i~~aLdaGa~GIm 162 (355)
++.+...|+|++-|.+-.-. .+.+.+.++++++.. ...+++|.+..... ...+.+.++|++||+
T Consensus 119 a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 119 APLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred HHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEE
Confidence 34555679999999876532 345667778887754 46899999976432 234667889999988
Q ss_pred e
Q 018508 163 F 163 (355)
Q Consensus 163 v 163 (355)
+
T Consensus 199 ~ 199 (420)
T PRK08318 199 L 199 (420)
T ss_pred E
Confidence 6
No 377
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.25 E-value=78 Score=30.04 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=52.1
Q ss_pred EecCCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC--C
Q 018508 91 LLSFSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM--I 166 (355)
Q Consensus 91 v~~~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~--V 166 (355)
+...+|. .++.....|+|+ .++||.-+-.....-.++++.+...-.++.|==.-.+.+.++++++.|++-|++-- +
T Consensus 27 ~~~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 27 FYEKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 3456776 456677899986 78999865333333333444432211232221111245789999999999988765 3
Q ss_pred CCHHHHHHH
Q 018508 167 DSPEAAKEA 175 (355)
Q Consensus 167 esaeea~~v 175 (355)
++++-++++
T Consensus 107 ~~p~~l~~~ 115 (241)
T PRK14114 107 EDPSFLKFL 115 (241)
T ss_pred CCHHHHHHH
Confidence 677777777
No 378
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=59.24 E-value=84 Score=29.73 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred ccCCCccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCch-HHHHHHHc-CCcEEEEEEecCCHHHHHHh
Q 018508 25 SFPKSPLFNLNGNKSKIVFPKLKLTPSVSRSPSDLSPGDPLSPSPSPSPE-SLKYRLQS-NETLYGLFLLSFSPTLAEIS 102 (355)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~lk~~L~~-G~~~~gl~v~~~sp~~~e~a 102 (355)
.||.|+.|-||++|.- .-....--. ....+++.-+.|. .+.+.++. ..+-.-++.-.++.+..-.+
T Consensus 76 d~~~s~v~ITptlkeV------d~L~~~Ga~------IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a 143 (229)
T COG3010 76 DYPDSPVRITPTLKEV------DALAEAGAD------IIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNA 143 (229)
T ss_pred CCCCCCceecccHHHH------HHHHHCCCc------EEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHH
Confidence 4777888887777643 111111100 1123333333443 55555554 23434445567888888899
Q ss_pred hhcCCcEEEEeCCC----CCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC-CCCHHHH-HHHH
Q 018508 103 GLAGYDFVVVDMEH----GPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM-IDSPEAA-KEAV 176 (355)
Q Consensus 103 a~~G~D~vilDlEh----~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~-Vesaeea-~~vv 176 (355)
..+|+|||=-=|-- +....+.=-++++.+...++.++.-=.=+.|...+++++.|+++|+|=- +..++++ ++++
T Consensus 144 ~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~ 223 (229)
T COG3010 144 HKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFV 223 (229)
T ss_pred HHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHH
Confidence 99999998544322 1111111123455554567777764334468889999999999888743 3445554 3455
Q ss_pred HHcC
Q 018508 177 SYCR 180 (355)
Q Consensus 177 ~a~~ 180 (355)
++++
T Consensus 224 ~~ik 227 (229)
T COG3010 224 DAIK 227 (229)
T ss_pred HHHh
Confidence 4443
No 379
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.94 E-value=1.2e+02 Score=28.79 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=57.8
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC--------CCHHH----HHHHHHHHHhCCCCeEEcCCCC---CHH-
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP--------GGISD----ALACLHALAATGTPAILRLPES---CPT- 148 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~--------~~~~~----a~~~i~a~~~~g~~~iVRV~~~---~~~- 148 (355)
..+..|+. .+++-++.+..+|.|.|-+=.--+. .+.++ +...++.++..|..+.+-.... ++.
T Consensus 62 ~~~~~~~r-~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~ 140 (259)
T cd07939 62 ARLIVWCR-AVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDF 140 (259)
T ss_pred CEEEEecc-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHH
Confidence 33444432 4677788888999998666432221 12223 3344555555665433333222 233
Q ss_pred ---HHHHHHhcCCCeEeecC---CCCHHHHHHHHHHcC
Q 018508 149 ---WAKKALDLGPQGVMFPM---IDSPEAAKEAVSYCR 180 (355)
Q Consensus 149 ---~i~~aLdaGa~GImvP~---Vesaeea~~vv~a~~ 180 (355)
.++++.++|++.|.++- +-+|+++.+++..++
T Consensus 141 ~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 141 LIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 35677889999999987 468999999998876
No 380
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=58.78 E-value=70 Score=31.34 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=60.3
Q ss_pred EEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCcee---ecccCCchhH
Q 018508 215 IMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYL---AGFAMPHDAP 291 (355)
Q Consensus 215 vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~---g~~~~d~~~a 291 (355)
|.+-.-...+++.++..+ +++++++|||+ ||- .|.++..+++|++-++.++++.. +|+..-.+..
T Consensus 82 VHP~l~~~~av~~i~k~L--~RlhavVIGPG-----LGR-----dp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~ 149 (306)
T KOG3974|consen 82 VHPVLDQENAVDIIEKLL--QRLHAVVIGPG-----LGR-----DPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLP 149 (306)
T ss_pred ecccccCCchHhHHHHHH--hheeEEEECCC-----CCC-----CHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhch
Confidence 333333344666666655 48999999997 442 57899999999999998877632 1111111223
Q ss_pred HHHHHCCCCEEEecchHHHHHHHHHHHH
Q 018508 292 LEMKSRGYHMVSGAVDVGLFRSAAVEDV 319 (355)
Q Consensus 292 ~~~~~~G~~~vs~~~D~~ll~~~~~~~~ 319 (355)
++ +=.||..+.+.+++.=+.+-+.+.+
T Consensus 150 e~-l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 150 ER-LIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred hh-hhccCceeeeCCcHHHHHHHHHHhh
Confidence 32 3378988999999887666655433
No 381
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=58.77 E-value=50 Score=33.30 Aligned_cols=68 Identities=25% Similarity=0.196 Sum_probs=42.7
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCC-------CCCHHHHHHHHHHHHhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHG-------PGGISDALACLHALAATGTPAILRLPES-CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~-------~~~~~~a~~~i~a~~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImv 163 (355)
..+++.++++...|+|+|++.- |+ +...+.+.++..+. .+..+++--.+. +...+.++|..||++|++
T Consensus 229 v~~~~dA~~a~~~G~d~I~vsn-hGGr~ld~~~~~~~~l~~i~~a~--~~~i~vi~dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 229 IQSPEDADVAINAGADGIWVSN-HGGRQLDGGPASFDSLPEIAEAV--NHRVPIIFDSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred CCCHHHHHHHHHcCCCEEEEeC-CCCccCCCCchHHHHHHHHHHHh--CCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4688999999999999999963 43 22222222222221 122334433343 355788888899999987
No 382
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=58.64 E-value=1.5e+02 Score=28.49 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=49.3
Q ss_pred EEEEEecCCHHH----HHHhhhc--CCcEEEEeCCCCC---------CCHHHHHHHHHHHHh-CCCCeEEcCCCCCH---
Q 018508 87 YGLFLLSFSPTL----AEISGLA--GYDFVVVDMEHGP---------GGISDALACLHALAA-TGTPAILRLPESCP--- 147 (355)
Q Consensus 87 ~gl~v~~~sp~~----~e~aa~~--G~D~vilDlEh~~---------~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~--- 147 (355)
+..-+...+++. ++++... ++|+|-|.+-.-. .+.+.+.+++++++. .+.+++||++....
T Consensus 93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~ 172 (300)
T TIGR01037 93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVTDIT 172 (300)
T ss_pred EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHH
Confidence 444444566653 3444444 3899888876321 245666777877764 47899999985322
Q ss_pred HHHHHHHhcCCCeEee
Q 018508 148 TWAKKALDLGPQGVMF 163 (355)
Q Consensus 148 ~~i~~aLdaGa~GImv 163 (355)
...+.+.++|+++|.+
T Consensus 173 ~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 173 EIAKAAEEAGADGLTL 188 (300)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 2345677899999986
No 383
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.52 E-value=1.5e+02 Score=27.36 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=65.3
Q ss_pred chHHHHHHHc-C-CcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC--------C----CHHHHHHHHHHHHhCCCCe
Q 018508 73 PESLKYRLQS-N-ETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP--------G----GISDALACLHALAATGTPA 138 (355)
Q Consensus 73 ~n~lk~~L~~-G-~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~--------~----~~~~a~~~i~a~~~~g~~~ 138 (355)
...+-++++. + +..+..++.. ..+.++.+..+|+|.|-+=+.-+. . ..+.+...+..+...|..+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~-~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 131 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRN-REKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEV 131 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccC-chhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3333344443 3 3455555543 388899999999999665553221 1 2344455566666666543
Q ss_pred EEcC---CC--CCHH----HHHHHHhcCCCeEeecC---CCCHHHHHHHHHHcCC
Q 018508 139 ILRL---PE--SCPT----WAKKALDLGPQGVMFPM---IDSPEAAKEAVSYCRF 181 (355)
Q Consensus 139 iVRV---~~--~~~~----~i~~aLdaGa~GImvP~---Vesaeea~~vv~a~~~ 181 (355)
.+=+ .. .++. .++.+.+.|++.|.++- +-++++++++++.++.
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHH
Confidence 2222 11 2333 35778889999888764 4689999999988763
No 384
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=58.44 E-value=14 Score=35.15 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHH
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAK 173 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~ 173 (355)
...+.++.+..+|.|+|++---++.. .+...+.+..++....|++.=+.+.+ .+--++|++++|-+=+..+..
T Consensus 20 ~~~~~~~~~~~~gtdai~vGGS~~vt-~~~~~~~v~~ik~~~lPvilfp~~~~------~i~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 20 LPDEALEAICESGTDAIIVGGSDGVT-EENVDELVKAIKEYDLPVILFPGNIE------GISPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred CCHHHHHHHHhcCCCEEEEcCCCccc-hHHHHHHHHHHhcCCCCEEEeCCCcc------ccCcCCCEEEEEEEecCCCcc
Q ss_pred HHHHHcCCCCCCCCCCcccccccccCCCC---ccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhh
Q 018508 174 EAVSYCRFPPSGVRGSAHTVVRASGYGID---EGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSAS 250 (355)
Q Consensus 174 ~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~---~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~s 250 (355)
.++.+-... ......++.. ..|+--..+...-.+ ..+..-=.+-++|++.-.+-+-++|--+.-..
T Consensus 93 ~iig~~~~~----------~~~~~~~~le~ip~gYiv~~~~~~va~~-~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle 161 (232)
T PRK04169 93 WIIGAHVEA----------APIIKKGGLEVIPEGYIVLNPGSKVAVV-GTAAPIPLDKPDIAAYAALAAEYLGMPIVYLE 161 (232)
T ss_pred hHhhHHHHH----------HHHHhhcCcEECceEEEEECCCCeeeee-eccccCCCChHHHHHHHHHHHHHcCCCeEEEE
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEecc
Q 018508 251 MGYL-WDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGAV 306 (355)
Q Consensus 251 lG~~-~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~~ 306 (355)
.|-. +.+.++++.+.+.+....+. ..+|+=-.+++.+++++..|++.+.+|+
T Consensus 162 ~gs~~g~~~~~e~I~~v~~~~~~~p----vivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 162 YGGGAGDPVPPEMVKAVKKALDITP----LIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCCCCCCCCCHHHHHHHHHhcCCCc----EEEECCCCCHHHHHHHHHhCCCEEEECh
No 385
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=58.39 E-value=1.2e+02 Score=26.20 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=57.1
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..++..|..-...+. ...+.....+.+....+|.|++|+.-...+--++...++.. ....+.++=....+......+
T Consensus 14 ~~l~~~L~~~~~~v~--~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~~-~~~~~ii~lt~~~~~~~~~~~ 90 (219)
T PRK10336 14 DGIKTGLSKMGFSVD--WFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREK-GQREPVLILTARDALAERVEG 90 (219)
T ss_pred HHHHHHHHHCCCEEE--EeCCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc-CCCCcEEEEECCCCHHHHHHH
Confidence 346666654322222 11222334455556679999999876543323333333321 123444554445556677889
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+++|+++++. +-.+.+++...++.+
T Consensus 91 ~~~ga~~~i~-kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 91 LRLGADDYLC-KPFALIEVAARLEAL 115 (219)
T ss_pred HhCCCCeEEE-CCCCHHHHHHHHHHH
Confidence 9999998755 344667776666554
No 386
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=58.24 E-value=2e+02 Score=28.63 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=47.0
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHH
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKE 174 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~ 174 (355)
....++.+...|.+.+- ....+++..+..+ +-..+++-.+...+..+..+++. +|. |.|+|.++++.
T Consensus 41 ~~~va~~l~~~g~~~f~------Vas~~Ea~~lr~~---Gi~~~ilvl~~~~~~e~~~~i~~---~i~-~~v~s~~~l~~ 107 (365)
T cd06826 41 IALVMPSIIAQNIPCVG------ITSNEEARVVREA---GFTGKILRVRTATPSEIEDALAY---NIE-ELIGSLDQAEQ 107 (365)
T ss_pred HHHHHHHHHHCCCCEEE------EccHHHHHHHHhc---CCCCCEEEEeCCCHHHHHHHHHc---CCE-EEECCHHHHHH
Confidence 45566677788888654 3456666554432 11223333455567778888885 445 88899999998
Q ss_pred HHHHcC
Q 018508 175 AVSYCR 180 (355)
Q Consensus 175 vv~a~~ 180 (355)
+.+.++
T Consensus 108 l~~~a~ 113 (365)
T cd06826 108 IDSLAK 113 (365)
T ss_pred HHHHHH
Confidence 887664
No 387
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=58.17 E-value=88 Score=30.53 Aligned_cols=74 Identities=11% Similarity=-0.091 Sum_probs=53.9
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCC-CCCHHHHHHHHhcCCCeEeecCC
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLP-ESCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~-~~~~~~i~~aLdaGa~GImvP~V 166 (355)
+-|-..+.+.++.+..+|+|.|.+| ..+.+++++.+..++.......|=+. +.+...+......|++.|++-..
T Consensus 191 IeVEv~tleea~ea~~~GaDiI~lD----n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 191 ITVEADTIEQALTVLQASPDILQLD----KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred EEEECCCHHHHHHHHHcCcCEEEEC----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 5566779999999999999999999 45667777777665432223333333 44677888899999999987554
No 388
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=58.16 E-value=1.9e+02 Score=28.33 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=53.0
Q ss_pred chHHHHHHHcCCcEEEEEE-ecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCC-eEEcCCCCCHHHH
Q 018508 73 PESLKYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTP-AILRLPESCPTWA 150 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v-~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~-~iVRV~~~~~~~i 150 (355)
.+.+++++...+..+..-+ ...++..++.+...|++.+. ....++++.+.. .|.. .++=.+-..+..+
T Consensus 17 i~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~------vas~~Ea~~~~~----~G~~~i~i~~~~~~~~~~ 86 (353)
T cd06820 17 IARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGIT------VATVGEAEVMAD----AGLSDIFIAYPIVGRQKL 86 (353)
T ss_pred HHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEE------EeeHHHHHHHHH----CCCCeEEEECCcCCHHHH
Confidence 3456666654222222222 24678888888888876443 244555544432 2332 2222222344444
Q ss_pred HHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 151 KKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 151 ~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
.++.+.-...-+.+.|+|.++++.+.++++
T Consensus 87 ~~l~~l~~~~~~~~~vds~~~l~~L~~~a~ 116 (353)
T cd06820 87 ERLRALAERVTLSVGVDSAEVARGLAEVAE 116 (353)
T ss_pred HHHHHHhcCCCEEEEECCHHHHHHHHHHHH
Confidence 443333223346778999999999988775
No 389
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=58.13 E-value=1.8e+02 Score=28.45 Aligned_cols=163 Identities=14% Similarity=0.004 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHh--CCCCeEEcCCCCCHHHH----HHHHhcC-CCeEe----ecCC-------CCHHHHHHHHHHcCC
Q 018508 120 GISDALACLHALAA--TGTPAILRLPESCPTWA----KKALDLG-PQGVM----FPMI-------DSPEAAKEAVSYCRF 181 (355)
Q Consensus 120 ~~~~a~~~i~a~~~--~g~~~iVRV~~~~~~~i----~~aLdaG-a~GIm----vP~V-------esaeea~~vv~a~~~ 181 (355)
..+...+.++.+.. .+.++++-|.+.+.... +++-++| +++|- .|++ .+++++.++++.++.
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~ 154 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFT 154 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHH
Confidence 34555554544332 24777888887765543 3344567 78754 4654 247788888887763
Q ss_pred CCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhccCCccEEEECh-------hhHH---hhc
Q 018508 182 PPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGP-------LDLS---ASM 251 (355)
Q Consensus 182 pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp-------~DLs---~sl 251 (355)
.- . .+ . -+.+-+.+ +...+..+-+.+...+++++..=. -|.- ..+
T Consensus 155 ~~----~--~P------v------------~vKlsp~~-~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~ 209 (310)
T PRK02506 155 YF----T--KP------L------------GVKLPPYF-DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVI 209 (310)
T ss_pred hc----C--Cc------c------------EEecCCCC-CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccc
Confidence 20 0 00 0 01222233 445555554544334566543311 1220 001
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHhCCCc--eeecccCCchhHHHHHHCCCCEEEecchHH
Q 018508 252 -------GYLWDPGHRKVREMMRVAEKGVLGGGKA--YLAGFAMPHDAPLEMKSRGYHMVSGAVDVG 309 (355)
Q Consensus 252 -------G~~~~~~~p~v~~ai~~iv~aa~a~g~~--~~g~~~~d~~~a~~~~~~G~~~vs~~~D~~ 309 (355)
|+.+.+-+|..++.+.++.+... ...+ .+||+ .+.+++.+++..|.+.|-+++-..
T Consensus 210 ~~~~~~GGlSG~~i~p~al~~v~~~~~~~~-~~ipIig~GGI-~s~~da~e~i~aGA~~Vqv~ta~~ 274 (310)
T PRK02506 210 KPKNGFGGIGGDYIKPTALANVRAFYQRLN-PSIQIIGTGGV-KTGRDAFEHILCGASMVQVGTALH 274 (310)
T ss_pred cCCCCCCcCCchhccHHHHHHHHHHHHhcC-CCCCEEEECCC-CCHHHHHHHHHcCCCHHhhhHHHH
Confidence 12334445555555554444331 1233 35555 456778888899999887775543
No 390
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=58.02 E-value=66 Score=29.36 Aligned_cols=116 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCe-EeecCCC---------CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE
Q 018508 149 WAKKALDLGPQG-VMFPMID---------SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ 218 (355)
Q Consensus 149 ~i~~aLdaGa~G-ImvP~Ve---------saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m 218 (355)
.+..+++.||+. -+++.+. ..+++.++++.|. ...+.+.
T Consensus 74 eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~-------------------------------g~~lkvI 122 (203)
T cd00959 74 EAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG-------------------------------GAPLKVI 122 (203)
T ss_pred HHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC-------------------------------CCeEEEE
Q ss_pred EccH----HHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHH
Q 018508 219 VESE----EGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEM 294 (355)
Q Consensus 219 IET~----~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~ 294 (355)
+|+. +-+..+-+|+.--|.|+| -.+.|.......++-.+.+.+++. ..-++++.||+- +.+++..+
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~I-------KTsTG~~~~~at~~~v~~~~~~~~--~~v~ik~aGGik-t~~~~l~~ 192 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFI-------KTSTGFGPGGATVEDVKLMKEAVG--GRVGVKAAGGIR-TLEDALAM 192 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEE-------EcCCCCCCCCCCHHHHHHHHHHhC--CCceEEEeCCCC-CHHHHHHH
Q ss_pred HHCCCCEEEec
Q 018508 295 KSRGYHMVSGA 305 (355)
Q Consensus 295 ~~~G~~~vs~~ 305 (355)
++.|.+.+-.+
T Consensus 193 ~~~g~~riG~s 203 (203)
T cd00959 193 IEAGATRIGTS 203 (203)
T ss_pred HHhChhhccCC
No 391
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=58.02 E-value=29 Score=32.24 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=87.5
Q ss_pred EecCCHHHHHHhhhcCCcEEEE--eCCCCC--CCHHHHHHHHHHHHhCCCCeEEcCCCCCH-----------HHHHHHHh
Q 018508 91 LLSFSPTLAEISGLAGYDFVVV--DMEHGP--GGISDALACLHALAATGTPAILRLPESCP-----------TWAKKALD 155 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vil--DlEh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~~~~-----------~~i~~aLd 155 (355)
+-..+++.+..+...|+|-|=| +++.+. .+....+..... ..-+..++||....+. ..|..+.+
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~-~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREA-VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHH-TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhh-cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 3467888999999999999877 456663 344444444432 1234557899766532 23677888
Q ss_pred cCCCeEeecCCC-----CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHH
Q 018508 156 LGPQGVMFPMID-----SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAED 230 (355)
Q Consensus 156 aGa~GImvP~Ve-----saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~niee 230 (355)
.|++||+|=-.+ +.+-.++++++++ +....+.|+... ++.-.+.++.
T Consensus 84 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-------~~~~tFHRAfD~---------------------~~d~~~al~~ 135 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEIDEEALEELIEAAG-------GMPVTFHRAFDE---------------------VPDPEEALEQ 135 (201)
T ss_dssp TT-SEEEE--BETTSSB-HHHHHHHHHHHT-------TSEEEE-GGGGG---------------------SSTHHHHHHH
T ss_pred cCCCeeEEEeECCCCCcCHHHHHHHHHhcC-------CCeEEEeCcHHH---------------------hCCHHHHHHH
Confidence 999999875442 3456678888775 222334444222 1113345666
Q ss_pred HhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCchhHHHHHH-CCCCEEEec
Q 018508 231 IAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPHDAPLEMKS-RGYHMVSGA 305 (355)
Q Consensus 231 IaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~~~a~~~~~-~G~~~vs~~ 305 (355)
+... |++.|.=--.. ..-.++ .+.++++++.++ ..+.+..+=...++.++.+++ -|++.+-.+
T Consensus 136 L~~l-G~~rVLTSGg~-------~~a~~g---~~~L~~lv~~a~-~~i~Im~GgGv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 136 LIEL-GFDRVLTSGGA-------PTALEG---IENLKELVEQAK-GRIEIMPGGGVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHH-T-SEEEESTTS-------SSTTTC---HHHHHHHHHHHT-TSSEEEEESS--TTTHHHHHHHHT-SEEEET
T ss_pred HHhc-CCCEEECCCCC-------CCHHHH---HHHHHHHHHHcC-CCcEEEecCCCCHHHHHHHHHhhCCeEEeec
Confidence 6665 78877542111 111223 233455555443 223322222234556666655 888877543
No 392
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.47 E-value=88 Score=29.12 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=69.3
Q ss_pred HhCCCCeEEcCCCCCHH--HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC--CCCCCCCCCcccccccccCCCCccccc
Q 018508 132 AATGTPAILRLPESCPT--WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR--FPPSGVRGSAHTVVRASGYGIDEGYLS 207 (355)
Q Consensus 132 ~~~g~~~iVRV~~~~~~--~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~--~pP~G~Rg~g~~~~ra~~~g~~~~y~~ 207 (355)
...+..+++|..+.+.. ..+.+.+.|...|=+++ +|+.-.+ +++.++ ||
T Consensus 6 ~~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~-~t~~a~~-~i~~l~~~~~------------------------- 58 (204)
T TIGR01182 6 REAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL-RTPVALD-AIRLLRKEVP------------------------- 58 (204)
T ss_pred hhCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC-CCccHHH-HHHHHHHHCC-------------------------
Confidence 45677788888765432 35667788888888888 5544433 333332 21
Q ss_pred cCCCceEEE-EEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC
Q 018508 208 NYEEELLIM-CQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM 286 (355)
Q Consensus 208 ~~n~~i~vi-~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~ 286 (355)
++.++ --|=|++.++.+-+ + |-+++ +.|+ . . ..+++.|+++|+.++.|. .
T Consensus 59 ----~~~vGAGTVl~~~~a~~a~~--a--GA~Fi-vsP~-----------~-~-------~~v~~~~~~~~i~~iPG~-~ 109 (204)
T TIGR01182 59 ----DALIGAGTVLNPEQLRQAVD--A--GAQFI-VSPG-----------L-T-------PELAKHAQDHGIPIIPGV-A 109 (204)
T ss_pred ----CCEEEEEeCCCHHHHHHHHH--c--CCCEE-ECCC-----------C-C-------HHHHHHHHHcCCcEECCC-C
Confidence 12222 23445544443322 1 55654 3332 1 1 256678999998876554 5
Q ss_pred CchhHHHHHHCCCCEEEec
Q 018508 287 PHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 287 d~~~a~~~~~~G~~~vs~~ 305 (355)
++.++....+.|++.+=+-
T Consensus 110 TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 110 TPSEIMLALELGITALKLF 128 (204)
T ss_pred CHHHHHHHHHCCCCEEEEC
Confidence 6777778889999986433
No 393
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=57.45 E-value=58 Score=30.47 Aligned_cols=87 Identities=11% Similarity=-0.054 Sum_probs=51.1
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHH----HHHHHHHHHhCCCCeEEcCCCCCHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISD----ALACLHALAATGTPAILRLPESCPTW 149 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~----a~~~i~a~~~~g~~~iVRV~~~~~~~ 149 (355)
..+|+++.. +..+|.-+ ..+...++.+...|+|||.+--=.. ..|.. -...++.+...-..|+|=|.+.....
T Consensus 101 ~~~r~~~~~-~~iiG~s~-~~s~~~a~~A~~~gaDYv~~Gpv~t-~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n 177 (221)
T PRK06512 101 AEAIEKHAP-KMIVGFGN-LRDRHGAMEIGELRPDYLFFGKLGA-DNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSDLAS 177 (221)
T ss_pred HHHHHhcCC-CCEEEecC-CCCHHHHHHhhhcCCCEEEECCCCC-CCCCCCCCCChHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 455555532 33455432 2345556667789999999853321 11110 11223222222235677788899999
Q ss_pred HHHHHhcCCCeEee
Q 018508 150 AKKALDLGPQGVMF 163 (355)
Q Consensus 150 i~~aLdaGa~GImv 163 (355)
+..++++|++||-+
T Consensus 178 ~~~~~~~GA~giAv 191 (221)
T PRK06512 178 AVEVAETGAEFVAL 191 (221)
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999998764
No 394
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=57.16 E-value=1e+02 Score=30.31 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHhhhc--CCcEEEEeCCCC-------CCCHHHHHHHHHHHHh-C-----CCCeEEcCCCCCH-----HHHHHHHhcC
Q 018508 98 LAEISGLA--GYDFVVVDMEHG-------PGGISDALACLHALAA-T-----GTPAILRLPESCP-----TWAKKALDLG 157 (355)
Q Consensus 98 ~~e~aa~~--G~D~vilDlEh~-------~~~~~~a~~~i~a~~~-~-----g~~~iVRV~~~~~-----~~i~~aLdaG 157 (355)
.++.+... .+|++-|.+-.- ..+.+.+.+++++++. . ..+++|++..... ..++.+.++|
T Consensus 150 ~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aG 229 (327)
T cd04738 150 YVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHG 229 (327)
T ss_pred HHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 44444333 389999988321 1234566777777653 2 2789999975432 1245667899
Q ss_pred CCeEee
Q 018508 158 PQGVMF 163 (355)
Q Consensus 158 a~GImv 163 (355)
+++|.+
T Consensus 230 ad~I~~ 235 (327)
T cd04738 230 VDGIIA 235 (327)
T ss_pred CcEEEE
Confidence 999875
No 395
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.16 E-value=47 Score=30.18 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=47.3
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
..++..+..+...|+|+|-+ .|.....=...++++.. .+..++|=+.+.++..+...+++|+++|-+
T Consensus 112 ~~t~~e~~~A~~~Gadyv~~----Fpt~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav 179 (187)
T PRK07455 112 ALTPTEIVTAWQAGASCVKV----FPVQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGL 179 (187)
T ss_pred cCCHHHHHHHHHCCCCEEEE----CcCCcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEE
Confidence 67888899999999999988 33321111233444432 223568889999999999999999998653
No 396
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=57.00 E-value=84 Score=30.51 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=50.1
Q ss_pred hhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeE---------EcCCC------CCHH----H---HHHHHhcCCC
Q 018508 102 SGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAI---------LRLPE------SCPT----W---AKKALDLGPQ 159 (355)
Q Consensus 102 aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~i---------VRV~~------~~~~----~---i~~aLdaGa~ 159 (355)
+...|+|.|= +|++ ......++++...|.+++ +|..+ .+.. . .++..++||+
T Consensus 102 ~~eaGa~aVk--iEgg----~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~ 175 (263)
T TIGR00222 102 MQETGANAVK--LEGG----EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQ 175 (263)
T ss_pred HHHhCCeEEE--EcCc----HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCC
Confidence 3347888765 5665 223455666667777777 66543 1221 1 3445689999
Q ss_pred eEeecCCCCHHHHHHHHHHcCCC
Q 018508 160 GVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 160 GImvP~Vesaeea~~vv~a~~~p 182 (355)
+|++|.|. .+.++++.+.+.-|
T Consensus 176 ~ivlE~vp-~~~a~~It~~l~iP 197 (263)
T TIGR00222 176 LLVLECVP-VELAAKITEALAIP 197 (263)
T ss_pred EEEEcCCc-HHHHHHHHHhCCCC
Confidence 99999999 69999999998755
No 397
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.00 E-value=1.7e+02 Score=28.01 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=53.3
Q ss_pred chHHHHHHHcCCcEEE-EEEecCCHHHHHHhhhc--CCcEEEEeCCCCCCC-----HHHHHHHHHHHHh-CCCCeEEcCC
Q 018508 73 PESLKYRLQSNETLYG-LFLLSFSPTLAEISGLA--GYDFVVVDMEHGPGG-----ISDALACLHALAA-TGTPAILRLP 143 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~g-l~v~~~sp~~~e~aa~~--G~D~vilDlEh~~~~-----~~~a~~~i~a~~~-~g~~~iVRV~ 143 (355)
...+.+++++-....+ +..|..+.+.++.+... ||.+++= .+ +... .+...+.++.++. .+.+++|--.
T Consensus 129 ~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~~-G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfG 206 (256)
T TIGR00262 129 SGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-RA-GVTGARNRAASALNELVKRLKAYSAKPVLVGFG 206 (256)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-CC-CCCCCcccCChhHHHHHHHHHhhcCCCEEEeCC
Confidence 4567777776554444 44456666666554443 3555432 33 3221 2345556655543 4566777554
Q ss_pred CCCHHHHHHHHhcCCCeEee
Q 018508 144 ESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~~~~~~i~~aLdaGa~GImv 163 (355)
-.++.+++++.+.||+||++
T Consensus 207 I~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 207 ISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 44588999999999999887
No 398
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=56.71 E-value=74 Score=30.25 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=57.8
Q ss_pred EEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhC--CCCe----EEcCCCCCHHHHHHHHhcCCCe
Q 018508 87 YGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAAT--GTPA----ILRLPESCPTWAKKALDLGPQG 160 (355)
Q Consensus 87 ~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~--g~~~----iVRV~~~~~~~i~~aLdaGa~G 160 (355)
.-.-+|..++..+..+...|+|.|++=.=+ +.+++++.+.+++.. |... ..|-..-... -...-.+-...
T Consensus 65 ~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~---s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~-~~y~~~~n~~~ 140 (249)
T TIGR02311 65 PVVRPAIGDPVLIKQLLDIGAQTLLVPMIE---TAEQAEAAVAATRYPPMGIRGVGSALARASRWNRI-PDYLQQADEEI 140 (249)
T ss_pred cEEECCCCCHHHHHHHhCCCCCEEEecCcC---CHHHHHHHHHHcCCCCCCcCCCCCccchhhccCCh-HHHHHHhhhce
Confidence 344467788888999999999999975433 468888888877632 1110 0121111100 01111122357
Q ss_pred EeecCCCCHHHHHHHHHHcCC
Q 018508 161 VMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 161 ImvP~Vesaeea~~vv~a~~~ 181 (355)
+++|||||++-++.+.+.+.-
T Consensus 141 ~vi~~IEt~~av~n~~eI~a~ 161 (249)
T TIGR02311 141 CVLLQVETREALDNLEEIAAV 161 (249)
T ss_pred EEEEEecCHHHHHHHHHHHCC
Confidence 899999999999999998873
No 399
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=56.61 E-value=21 Score=29.93 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=36.8
Q ss_pred CceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC
Q 018508 211 EELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254 (355)
Q Consensus 211 ~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~ 254 (355)
..+-++++++|.+++..+.+|+ ||+...=..-.||+..||+.
T Consensus 51 ~AvGlVVnV~t~~~l~~Lr~la--pgl~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 51 GAVGLVVNVETAAALQRLRALA--PGLPLLPVSGDDLAERLGLR 92 (105)
T ss_pred CCeEEEEecCCHHHHHHHHHHc--CCCcccCCCHHHHHHHhCCC
Confidence 3477999999999999999999 57888888889999999875
No 400
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=56.44 E-value=1.3e+02 Score=30.60 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHHhcCCC--eEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHH
Q 018508 149 WAKKALDLGPQ--GVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~--GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~a 224 (355)
+|.++.++|++ -|-+|..+.++.++++.+.++.. | -++.+++=| .-..|
T Consensus 36 QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~-----g----------------------~~iPlVADIHFd~~lA 88 (359)
T PF04551_consen 36 QIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRAL-----G----------------------SPIPLVADIHFDYRLA 88 (359)
T ss_dssp HHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCT-----T-----------------------SS-EEEEESTTCHHH
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccC-----C----------------------CCCCeeeecCCCHHHH
Confidence 57778889987 46688888888888888776531 1 134555544 56677
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecc-cCCc---------------
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGF-AMPH--------------- 288 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~-~~d~--------------- 288 (355)
++.++. +|.|=|-|+-+.- .++...-.+.+-+..++.+|+++|+++--|+ .++.
T Consensus 89 l~a~~~------v~kiRINPGNi~~----~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~am 158 (359)
T PF04551_consen 89 LEAIEA------VDKIRINPGNIVD----EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAM 158 (359)
T ss_dssp HHHHHC-------SEEEE-TTTSS--------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHH
T ss_pred HHHHHH------hCeEEECCCcccc----cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHH
Confidence 776554 5566666654321 1111111235667889999999998753222 2221
Q ss_pred -----hhHHHHHHCCCCEEEe---cchHHHHHHHHHHHHHHHH
Q 018508 289 -----DAPLEMKSRGYHMVSG---AVDVGLFRSAAVEDVARFK 323 (355)
Q Consensus 289 -----~~a~~~~~~G~~~vs~---~~D~~ll~~~~~~~~~~~r 323 (355)
+.++.+.++||+-+.+ ++|+..+-++++...+.+.
T Consensus 159 vesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 159 VESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAERMD 201 (359)
T ss_dssp HHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHhcC
Confidence 3456677999986555 4888888888877665543
No 401
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.28 E-value=1.3e+02 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.094 Sum_probs=21.7
Q ss_pred EEEccHHHHHHHHHHhccCCccEEEEChhhH
Q 018508 217 CQVESEEGVKRAEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 217 ~mIET~~av~nieeIaavpgVD~l~iGp~DL 247 (355)
+..|.....+.++++.+...+|+|.+|..=|
T Consensus 280 i~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l 310 (353)
T cd02930 280 IASNRINTPEVAERLLADGDADMVSMARPFL 310 (353)
T ss_pred EEcCCCCCHHHHHHHHHCCCCChhHhhHHHH
Confidence 3345555567778888766799999988633
No 402
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.23 E-value=1.7e+02 Score=27.05 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=51.4
Q ss_pred CchHHHHHHHcCCcEEEEEEe--cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeE-------EcC
Q 018508 72 SPESLKYRLQSNETLYGLFLL--SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAI-------LRL 142 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~--~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~i-------VRV 142 (355)
..+.+++..+.- -+-+++. +.+++.++.+..+|+|.|++..+... +.+.+.++.+........+- |++
T Consensus 64 ~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~-~~~~~~~i~~~~g~~~i~~sid~~~~~v~~ 140 (241)
T PRK13585 64 NAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE-NPEIVRELSEEFGSERVMVSLDAKDGEVVI 140 (241)
T ss_pred cHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh-ChHHHHHHHHHhCCCcEEEEEEeeCCEEEE
Confidence 345566554432 2334443 47888899999999999999877642 33444444443211111000 112
Q ss_pred CC------CCH-HHHHHHHhcCCCeEeecCC
Q 018508 143 PE------SCP-TWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 143 ~~------~~~-~~i~~aLdaGa~GImvP~V 166 (355)
.+ .++ +.++++.+.|++.|.+--+
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 22 133 3467777889998876444
No 403
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=56.17 E-value=96 Score=30.89 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=64.2
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcC--CcEEEEeCCCC-CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHH-
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAG--YDFVVVDMEHG-PGGISDALACLHALAATGTPAILRLPESCPT- 148 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G--~D~vilDlEh~-~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~- 148 (355)
.+.+++.. ......+.|+.+.+.+-=+.++..+ +|++++--+|. ..-.+. +|..++......+.=|.+.+..
T Consensus 84 i~~~~~~~-~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLEN---lIA~l~~e~~kliA~V~saeEA~ 159 (376)
T COG1465 84 IEALRELM-DRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLEN---LIADLQHEKVKLIAGVKSAEEAR 159 (376)
T ss_pred HHHHHHhh-hcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHH---HHHHhhccceEEEEEeccHHHHH
Confidence 34454444 4445567788876654434443332 49999999988 223333 3433333344455555554433
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCC
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRF 181 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~ 181 (355)
....-|+.|++||++-- .++++++...+..+.
T Consensus 160 vA~eTLE~GaDgVll~~-~d~~eIk~~~~~~~e 191 (376)
T COG1465 160 VALETLEKGADGVLLDS-DDPEEIKKTAEVVEE 191 (376)
T ss_pred HHHHHHhccCceEEeCC-CCHHHHHHHHHHHHH
Confidence 35678999999999854 589999988877654
No 404
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=56.07 E-value=2.3e+02 Score=28.57 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHhccCCccE--EEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeeccc---C-------Cc
Q 018508 221 SEEGVKRAEDIAAVDGVDC--VQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFA---M-------PH 288 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~--l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~---~-------d~ 288 (355)
+.++++.+-+. |+|. +++...|+-....... ...+.++.+.++++.|+++|..+.+.+. + ++
T Consensus 123 n~~die~A~~~----g~~~v~i~~s~Sd~h~~~n~~~--t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~ 196 (347)
T PLN02746 123 NLKGFEAAIAA----GAKEVAVFASASESFSKSNINC--SIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPP 196 (347)
T ss_pred CHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCH
Confidence 66666665442 4443 6667888766544322 3457788888999999999987643321 1 22
Q ss_pred ----hhHHHHHHCCCCEEEecchHHHHH-HHHHHHHHHHHHhc
Q 018508 289 ----DAPLEMKSRGYHMVSGAVDVGLFR-SAAVEDVARFKMNL 326 (355)
Q Consensus 289 ----~~a~~~~~~G~~~vs~~~D~~ll~-~~~~~~~~~~r~~~ 326 (355)
+.++.+.+.|.+.+.+...++++. ....+.+..+|...
T Consensus 197 ~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 197 SKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhC
Confidence 346788999999999988777653 34455666666543
No 405
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=55.94 E-value=1.1e+02 Score=30.60 Aligned_cols=184 Identities=17% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHcCCcEEEEEEec-CCHHHHHHhhhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcC
Q 018508 80 LQSNETLYGLFLLS-FSPTLAEISGLAGYDFVVVD-MEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLG 157 (355)
Q Consensus 80 L~~G~~~~gl~v~~-~sp~~~e~aa~~G~D~vilD-lEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaG 157 (355)
||.|+...+...+. ..-.+++.+..+|+|.|=+- -..+..+.+..+.+...........++|.+ ...+.+++++|
T Consensus 9 LRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~---~~di~~a~~~g 85 (365)
T TIGR02660 9 LRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRAR---DADIEAAARCG 85 (365)
T ss_pred CCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCC---HHHHHHHHcCC
Q ss_pred CCeEeecCCCC---------------HHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccH
Q 018508 158 PQGVMFPMIDS---------------PEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESE 222 (355)
Q Consensus 158 a~GImvP~Ves---------------aeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~ 222 (355)
++.|.+..--| .+.+.++++.++.. .-.+.+.++-.+.
T Consensus 86 ~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~---------------------------g~~v~~~~ed~~r 138 (365)
T TIGR02660 86 VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDR---------------------------GLFVSVGGEDASR 138 (365)
T ss_pred cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC---------------------------CCEEEEeecCCCC
Q ss_pred HHHHHHHHHhcc---CCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCc-----hhHHHH
Q 018508 223 EGVKRAEDIAAV---DGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPH-----DAPLEM 294 (355)
Q Consensus 223 ~av~nieeIaav---pgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~-----~~a~~~ 294 (355)
.-.+.+-+++.. -|+|.|.+ .+...-.....+.+++...++.-..+++..+.+- +.+...
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l------------~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA 206 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRF------------ADTVGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAA 206 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEE------------cccCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHH
Q ss_pred HHCCCCEEEec
Q 018508 295 KSRGYHMVSGA 305 (355)
Q Consensus 295 ~~~G~~~vs~~ 305 (355)
++.|++.+-.+
T Consensus 207 ~~aGa~~vd~t 217 (365)
T TIGR02660 207 VRAGATHVNTT 217 (365)
T ss_pred HHhCCCEEEEE
No 406
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=55.87 E-value=2.1e+02 Score=31.03 Aligned_cols=142 Identities=12% Similarity=0.040 Sum_probs=84.9
Q ss_pred HHHHHHhcCCCe--EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHH
Q 018508 149 WAKKALDLGPQG--VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~G--ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~a 224 (355)
++.++.++|++- |-+|-.+.++-++.+.+.++. .|. .+.+++=| --..|
T Consensus 50 Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~-----~g~----------------------~iPLVADIHF~~~~A 102 (606)
T PRK00694 50 QICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQ-----QGI----------------------SIPLVADIHFFPQAA 102 (606)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhc-----cCC----------------------CCCEEeecCCChHHH
Confidence 467777788864 556766666666777766542 111 23444444 23344
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhh------cCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-eecccCC-------
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSAS------MGY---LWDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMP------- 287 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~s------lG~---~~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d------- 287 (355)
+..++. +|.|=|-|+-+.-. .-+ .++.+...+.+.+..++..|+++|+++ +|.-.++
T Consensus 103 ~~a~~~------vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~ 176 (606)
T PRK00694 103 MHVADF------VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQ 176 (606)
T ss_pred HHHHHh------cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 444443 45566666544220 000 012233445677888999999999875 3322221
Q ss_pred -----c--------hhHHHHHHCCCCEEEec---chHHHHHHHHHHHHHHHH
Q 018508 288 -----H--------DAPLEMKSRGYHMVSGA---VDVGLFRSAAVEDVARFK 323 (355)
Q Consensus 288 -----~--------~~a~~~~~~G~~~vs~~---~D~~ll~~~~~~~~~~~r 323 (355)
+ +.++.+.++||.-+.++ +|+..|-++++-..+.+.
T Consensus 177 ~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d 228 (606)
T PRK00694 177 RYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLD 228 (606)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 1 44667789999876654 899999999988877775
No 407
>PRK09483 response regulator; Provisional
Probab=55.78 E-value=1.4e+02 Score=25.97 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=58.8
Q ss_pred hHHHHHHHcCCcEEEEEEecCCH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-CCCCHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSP-TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-PESCPTWAK 151 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp-~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-~~~~~~~i~ 151 (355)
..++..|+. .+-+.......+. ...+.+....+|.|++|+.....+-.+....++. ..+..++|=+ ...+.....
T Consensus 15 ~~l~~~L~~-~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~--~~~~~~ii~ls~~~~~~~~~ 91 (217)
T PRK09483 15 AGIRRILED-IKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILR--YTPDVKIIMLTVHTENPLPA 91 (217)
T ss_pred HHHHHHHcc-CCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH--HCCCCeEEEEeCCCCHHHHH
Confidence 346666653 2222332234444 3456667778999999998754433333333332 2232333333 334456677
Q ss_pred HHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 152 KALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 152 ~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
.++..|+++++. +-.+.+++...++.+.
T Consensus 92 ~~~~~g~~~~l~-k~~~~~~l~~~i~~~~ 119 (217)
T PRK09483 92 KVMQAGAAGYLS-KGAAPQEVVSAIRSVH 119 (217)
T ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHHHHH
Confidence 899999999764 4456777777776654
No 408
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.22 E-value=94 Score=30.36 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred EEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCC--CCeEEcCC-CCCHHHHHHHHhcCCCeEeec
Q 018508 88 GLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATG--TPAILRLP-ESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 88 gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g--~~~iVRV~-~~~~~~i~~aLdaGa~GImvP 164 (355)
-+-+-..+.+.++.++.+|+|.|.+|-- +.+++++.+..+...+ ..+.+=+. +.+...+......|+|.|.+-
T Consensus 184 kIeVEv~~leea~~a~~agaDiI~LDn~----~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 184 VVEVEVESLEDALKAAKAGADIIMLDNM----TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred cEEEEeCCHHHHHHHHHcCcCEEEECCC----CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 3667778999999999999999999975 4566666665554322 12233333 456788999999999998874
Q ss_pred C
Q 018508 165 M 165 (355)
Q Consensus 165 ~ 165 (355)
.
T Consensus 260 a 260 (278)
T PRK08385 260 A 260 (278)
T ss_pred h
Confidence 4
No 409
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=55.13 E-value=1.8e+02 Score=27.01 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=50.7
Q ss_pred CH-HHHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCC-CHHHHHHHHhcCCCeEeecCC--CC
Q 018508 95 SP-TLAEISGLAGYDF-VVVDMEHGPGGISDALACLHALA-ATGTPAILRLPES-CPTWAKKALDLGPQGVMFPMI--DS 168 (355)
Q Consensus 95 sp-~~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImvP~V--es 168 (355)
+| +.++.+...|+|. +++|+.-.......-.+.++.+. ..+.++++ ..+. +...+.+++..|+++|++-.. ++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~-~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTV-GGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEE-eCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 55 5677888899995 67777733211121223333332 23344432 1222 466788999999999998763 67
Q ss_pred HHHHHHHHHHc
Q 018508 169 PEAAKEAVSYC 179 (355)
Q Consensus 169 aeea~~vv~a~ 179 (355)
++.++++.+.+
T Consensus 107 p~~~~~i~~~~ 117 (243)
T cd04731 107 PELIREIAKRF 117 (243)
T ss_pred hHHHHHHHHHc
Confidence 77777777764
No 410
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=55.12 E-value=1.6e+02 Score=29.35 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=18.1
Q ss_pred eecccCCchhHHHHHHCCCCEEEecchH
Q 018508 281 LAGFAMPHDAPLEMKSRGYHMVSGAVDV 308 (355)
Q Consensus 281 ~g~~~~d~~~a~~~~~~G~~~vs~~~D~ 308 (355)
+|++ .+.+++.+++..|++.|.+++-.
T Consensus 295 ~GGI-~s~eda~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 295 VGGI-DSAEDAYEKIRAGASLVQIYSGL 321 (344)
T ss_pred ECCC-CCHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 35688888888998877665443
No 411
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=54.67 E-value=1.7e+02 Score=26.72 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=50.2
Q ss_pred cCCHH-HHHHhhhcCCcE-EEEeCCCCC----CCHHHHHHHHHHHHhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEeecC
Q 018508 93 SFSPT-LAEISGLAGYDF-VVVDMEHGP----GGISDALACLHALAATGTPAILRLPES-CPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 93 ~~sp~-~~e~aa~~G~D~-vilDlEh~~----~~~~~a~~~i~a~~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImvP~ 165 (355)
..+|. .++.....|+|. .++|+.... .+.+..+.+.+ ..+.++++ -.+. +...+++++..|+++|++-.
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~---~~~~pv~~-~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVK---AVDIPVQV-GGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHH---HCCCCEEE-cCCcCCHHHHHHHHHcCCCEEEECc
Confidence 34554 567777889976 677874332 23333333333 23455554 2222 46789999999999988754
Q ss_pred C--CCHHHHHHHHHHc
Q 018508 166 I--DSPEAAKEAVSYC 179 (355)
Q Consensus 166 V--esaeea~~vv~a~ 179 (355)
. ++++.++++.+..
T Consensus 105 ~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 105 AAVKNPELVKEACKKF 120 (233)
T ss_pred hHHhCHHHHHHHHHHh
Confidence 3 5566677766653
No 412
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=54.60 E-value=1.5e+02 Score=28.77 Aligned_cols=72 Identities=29% Similarity=0.174 Sum_probs=44.7
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCC----CHHHHHHHHHHHHhC-CCCeEEcCCCC-CHHHHHHHHhcCCCeEeecC
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPG----GISDALACLHALAAT-GTPAILRLPES-CPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~----~~~~a~~~i~a~~~~-g~~~iVRV~~~-~~~~i~~aLdaGa~GImvP~ 165 (355)
..+++.++.+...|+|+|++.. |+.. ...++..+....+.. ...+++--.+. +...+.++|..||++|++-.
T Consensus 180 v~s~~~a~~a~~~G~d~I~v~~-~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 180 ILTPEDALRAVDAGADGIVVSN-HGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred cCCHHHHHHHHHCCCCEEEEcC-CCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence 3788899999999999999985 4421 112222221111222 12344444444 45678899999999999844
No 413
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.59 E-value=1.8e+02 Score=26.87 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=46.5
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEe
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVM 162 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GIm 162 (355)
..+|..+..+...|+|+|-+ ..-.....+......... ....++|=+.+.+...+...+.+|+++|.
T Consensus 111 ~~t~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~--~~~ipvvaiGGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 111 VATPTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVL--PPDVPVFAVGGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred cCCHHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhc--CCCCeEEEECCCCHHHHHHHHHCCCeEEE
Confidence 66888888899999999986 222233333333332221 12356788889999999999999999876
No 414
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=54.58 E-value=1.7e+02 Score=28.46 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=61.2
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEe---------CCCC-CCCHHHHHHHHHHHHh-CCCC-eEE
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVD---------MEHG-PGGISDALACLHALAA-TGTP-AIL 140 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilD---------lEh~-~~~~~~a~~~i~a~~~-~g~~-~iV 140 (355)
...|+++.++|++... ++.-+...+..+..+|+|.|.+- .+++ +.+.+++....+++.. .+.+ +++
T Consensus 4 ~~~~~~~~~~g~~i~m--~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~ 81 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVA--ITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVT 81 (263)
T ss_pred HHHHHHHHhCCCcEEE--EeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEe
Confidence 3457777778887544 45668888888889999998863 1222 3456666666666543 3333 333
Q ss_pred cCCCCC---HH----HHHHHHh-cCCCeEeecCCCCHHHHHHHHHHc
Q 018508 141 RLPESC---PT----WAKKALD-LGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 141 RV~~~~---~~----~i~~aLd-aGa~GImvP~Vesaeea~~vv~a~ 179 (355)
-+|-.+ ++ ...+++. +|+++|-+ |...+....++++
T Consensus 82 DmPf~sy~~~e~a~~na~rl~~eaGa~aVki---Egg~~~~~~i~~l 125 (263)
T TIGR00222 82 DLPFMSYATPEQALKNAARVMQETGANAVKL---EGGEWLVETVQML 125 (263)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHhCCeEEEE---cCcHhHHHHHHHH
Confidence 444332 22 2456676 89999866 4444444444443
No 415
>PRK10651 transcriptional regulator NarL; Provisional
Probab=53.81 E-value=1.4e+02 Score=25.53 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=57.0
Q ss_pred hHHHHHHHcCCcEEEEEEecCCH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSP-TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp-~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|... .-+.......+. .....+....+|.|++|++-...+-.+....++.. ....++++=....+......
T Consensus 20 ~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~~~~~~~~~~l~~~-~~~~~vi~l~~~~~~~~~~~ 97 (216)
T PRK10651 20 TGVKQLISMA-PDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK-SLSGRIVVFSVSNHEEDVVT 97 (216)
T ss_pred HHHHHHHccC-CCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHH
Confidence 3455556432 112222223343 34556666779999999876544333333333321 12334444344445667778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
++..|+++++.-- -+.+++...+..+.
T Consensus 98 ~~~~g~~~~i~k~-~~~~~l~~~i~~~~ 124 (216)
T PRK10651 98 ALKRGADGYLLKD-MEPEDLLKALQQAA 124 (216)
T ss_pred HHHcCCCEEEeCC-CCHHHHHHHHHHHH
Confidence 8999999876543 45666666665543
No 416
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=53.47 E-value=1.5e+02 Score=25.74 Aligned_cols=101 Identities=18% Similarity=0.073 Sum_probs=55.7
Q ss_pred HHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH
Q 018508 75 SLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 75 ~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL 154 (355)
.++..|......+ ..........+.+....+|.+++|++-...+--+....++.. ....+.++=....+......++
T Consensus 18 ~l~~~l~~~~~~v--~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~a~ 94 (228)
T PRK11083 18 TLVYALQSEGFTV--EWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLAF-HPALPVIFLTARSDEVDRLVGL 94 (228)
T ss_pred HHHHHHHHCCCEE--EEEcCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh-CCCCCEEEEEcCCcHHHHHHHh
Confidence 4555665422222 111233344556666779999999986544433333333321 1234444433334455677889
Q ss_pred hcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 155 DLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 155 daGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+.|+++++..- -+.+++...++.+
T Consensus 95 ~~Ga~~~l~kp-~~~~~l~~~i~~~ 118 (228)
T PRK11083 95 EIGADDYVAKP-FSPREVAARVRTI 118 (228)
T ss_pred hcCCCeEEECC-CCHHHHHHHHHHH
Confidence 99999877644 4566666555543
No 417
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=53.34 E-value=1.7e+02 Score=28.06 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHhhhcCCcEEEEeCCCC---CCCHHHHHHHHHHH---HhCCCCeEEcCCCCCHH----HHHHHHhcCCCeEee
Q 018508 97 TLAEISGLAGYDFVVVDMEHG---PGGISDALACLHAL---AATGTPAILRLPESCPT----WAKKALDLGPQGVMF 163 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~---~~~~~~a~~~i~a~---~~~g~~~iVRV~~~~~~----~i~~aLdaGa~GImv 163 (355)
..++.+...|.|.+++-.--| -.+.++-.++++.+ -....++++=|...+.. .++.+.++|+++||+
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALV 102 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 356777788999998854433 23445444444432 23346778888776653 357788899999876
No 418
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.26 E-value=2.3e+02 Score=27.84 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHH-HhCCCCeEEcCCCCCHHH----HHHHHhcCCCeEee
Q 018508 120 GISDALACLHAL-AATGTPAILRLPESCPTW----AKKALDLGPQGVMF 163 (355)
Q Consensus 120 ~~~~a~~~i~a~-~~~g~~~iVRV~~~~~~~----i~~aLdaGa~GImv 163 (355)
..+...+.+..+ +..+.+++|=|...+... ++.+-++|+++|.+
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~iel 133 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALEL 133 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 355555555444 334678888888876643 34555689999987
No 419
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=53.23 E-value=27 Score=40.60 Aligned_cols=106 Identities=17% Similarity=0.052 Sum_probs=73.2
Q ss_pred CchHHHHHHHcCCcEEEEEEecCC-H--HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCe---EEcCC--
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFS-P--TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPA---ILRLP-- 143 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~s-p--~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~---iVRV~-- 143 (355)
.||...|.|-.|+-.+|.- +-++ . .+++.++..|.|.+-+ =|+..+.++++..+.++...|..+ +.-..
T Consensus 602 ~pn~~~qml~Rg~n~vgy~-~ypd~vv~~f~~~~~~~Gidifri--fD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~ 678 (1143)
T TIGR01235 602 VPNILFQMLLRGANGVGYT-NYPDNVVKYFVKQAAQGGIDIFRV--FDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDI 678 (1143)
T ss_pred CCCCceeeeeccccccCcc-CCCHHHHHHHHHHHHHcCCCEEEE--CccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccC
Confidence 6888888899999999944 4433 2 4678889999997443 455566777777777776666432 22221
Q ss_pred --C----CCH----HHHHHHHhcCCCeEeecCC---CCHHHHHHHHHHcC
Q 018508 144 --E----SCP----TWAKKALDLGPQGVMFPMI---DSPEAAKEAVSYCR 180 (355)
Q Consensus 144 --~----~~~----~~i~~aLdaGa~GImvP~V---esaeea~~vv~a~~ 180 (355)
. .+. ..++.+.++|++.|.+.-. -+|.++..++++++
T Consensus 679 ~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk 728 (1143)
T TIGR01235 679 LDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALR 728 (1143)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHH
Confidence 1 112 2357788999998888754 67899999999986
No 420
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=53.03 E-value=2.3e+02 Score=27.65 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCC---CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHH----HHHHhcCCCeEee
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGP---GGISDALACLHALAATGTPAILRLPESCPTWA----KKALDLGPQGVMF 163 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~---~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i----~~aLdaGa~GImv 163 (355)
++..+-..+...|+|+++-.+-+.. ...+.....+. ....+.+++|=+.+.++..+ +++.++|+++|=+
T Consensus 19 t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~-~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~Iel 94 (319)
T TIGR00737 19 TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLD-IAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDI 94 (319)
T ss_pred CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhh-cCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3444445556667777765555442 11111111111 11235667788888888653 4455689999865
No 421
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=52.99 E-value=2.3e+02 Score=27.59 Aligned_cols=209 Identities=15% Similarity=0.116 Sum_probs=104.9
Q ss_pred HHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC--CC-HHHHHHHHHH-HHhCC-CCeEEcCCCC-
Q 018508 76 LKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP--GG-ISDALACLHA-LAATG-TPAILRLPES- 145 (355)
Q Consensus 76 lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~--~~-~~~a~~~i~a-~~~~g-~~~iVRV~~~- 145 (355)
+-+.-+++...++.| +..+.+. ++.+...+...|+.=.+... .. .+.+..+++. ++... .++.+-....
T Consensus 7 ~l~~A~~~~yav~Af-n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 7 ILQKAKKEGYAVGAF-NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred HHHHHHHCCceEEEE-EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 334445567777766 4445543 45555677786663222211 12 5556666654 34555 5666555433
Q ss_pred CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc
Q 018508 146 CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE 220 (355)
Q Consensus 146 ~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE 220 (355)
+...+.++++.|.+.||+ |.=+..+..+++++.|+- .| ... ..-.|.. .. .+...+. .--
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~--~g---v~V----e~ElG~~----gg-~ed~~~g-~~~ 150 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHA--KG---VSV----EAELGTL----GG-IEDGVDE-KEA 150 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHH--cC---CEE----EEeeCCC----cC-ccccccc-ccc
Confidence 356789999999988886 444445556777777752 12 110 0111110 00 0111111 000
Q ss_pred cHHHHHHHHHHhccCCccEEE--EChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHH
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQ--MGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKS 296 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~--iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~ 296 (355)
+..-++.+.+...--|+|.|. +|+.=- ..-+. ... + .+.++++.+.. +++. .|+-..+.+..++.++
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg-~~~~~-~~l-~---~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~ 221 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHG-KYKGE-PGL-D---FERLKEIKELT---NIPLVLHGASGIPEEQIKKAIK 221 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCcccc-ccCCC-Ccc-C---HHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHH
Confidence 111233333333323799888 455210 00011 111 1 22334433332 3442 3322335678889999
Q ss_pred CCCCEEEecchHH
Q 018508 297 RGYHMVSGAVDVG 309 (355)
Q Consensus 297 ~G~~~vs~~~D~~ 309 (355)
.|.+.+.+++|..
T Consensus 222 ~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 222 LGIAKINIDTDCR 234 (282)
T ss_pred cCCCEEEECcHHH
Confidence 9999999999974
No 422
>PLN02428 lipoic acid synthase
Probab=52.95 E-value=2e+02 Score=29.09 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCcEEEE------eCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCC----CHHHHHHHHhcCCCeE-----
Q 018508 97 TLAEISGLAGYDFVVV------DMEHGPGGISDALACLHALAATGTPAILRLPES----CPTWAKKALDLGPQGV----- 161 (355)
Q Consensus 97 ~~~e~aa~~G~D~vil------DlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~----~~~~i~~aLdaGa~GI----- 161 (355)
+.++.+...|.+.|+| |+.| .+.+...++++.++.......|-+-.+ +.+.+..+.++|.+.+
T Consensus 137 ~vA~~v~~~Glk~vvltSg~rddl~D--~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlE 214 (349)
T PLN02428 137 NVAEAIASWGVDYVVLTSVDRDDLPD--GGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIE 214 (349)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCCc--ccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCcc
Q ss_pred ----eecCCC----CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc
Q 018508 162 ----MFPMID----SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA 233 (355)
Q Consensus 162 ----mvP~Ve----saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa 233 (355)
+.+.|. +-++..++++.++..-.|..--. ..++-+-||.+=+..+-+.+.
T Consensus 215 Tv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkS----------------------g~MvGLGET~Edv~e~l~~Lr 272 (349)
T PLN02428 215 TVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKT----------------------SIMLGLGETDEEVVQTMEDLR 272 (349)
T ss_pred CcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEE----------------------eEEEecCCCHHHHHHHHHHHH
Q ss_pred cCCccEEEEChh
Q 018508 234 VDGVDCVQMGPL 245 (355)
Q Consensus 234 vpgVD~l~iGp~ 245 (355)
--++|.+.||.+
T Consensus 273 elgvd~vtigqy 284 (349)
T PLN02428 273 AAGVDVVTFGQY 284 (349)
T ss_pred HcCCCEEeeccc
No 423
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=52.76 E-value=1.8e+02 Score=26.99 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=44.9
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCC---C-CCCHHHHHHHHHHHHhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEeecC
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEH---G-PGGISDALACLHALAATGTPAILRLPES-CPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh---~-~~~~~~a~~~i~a~~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImvP~ 165 (355)
.-++.-+..++.+|++||-.=.-- . ....+...++.+.++..+..+=|=+++. ++.++..++.+|++.|-+|.
T Consensus 109 V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~ 186 (211)
T cd00956 109 IFSAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPP 186 (211)
T ss_pred ecCHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCH
Confidence 457777888888999985432221 1 2234445555555555554432223333 46678888889999998883
No 424
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=52.40 E-value=87 Score=31.15 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=43.3
Q ss_pred HHHHHhhhcC--CcEEEEeCCC--C-----CCCHHHHHHHHHHHHh-C-------CCCeEEcCCCCCH----H-HHHHHH
Q 018508 97 TLAEISGLAG--YDFVVVDMEH--G-----PGGISDALACLHALAA-T-------GTPAILRLPESCP----T-WAKKAL 154 (355)
Q Consensus 97 ~~~e~aa~~G--~D~vilDlEh--~-----~~~~~~a~~~i~a~~~-~-------g~~~iVRV~~~~~----~-~i~~aL 154 (355)
+.++.+...+ +|++-|.+-- . ..+.+...+.++++.. . ..+++|++...-. . .++.+.
T Consensus 155 dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~ 234 (335)
T TIGR01036 155 DYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLV 234 (335)
T ss_pred HHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4555555555 9999998731 1 1244555666665532 1 2789999987532 2 246678
Q ss_pred hcCCCeEee
Q 018508 155 DLGPQGVMF 163 (355)
Q Consensus 155 daGa~GImv 163 (355)
++|++||++
T Consensus 235 ~~GadGi~l 243 (335)
T TIGR01036 235 ELGIDGVIA 243 (335)
T ss_pred HhCCcEEEE
Confidence 899999987
No 425
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=52.36 E-value=1.7e+02 Score=26.01 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=48.1
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAV 176 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv 176 (355)
...+.+....+|.|++|++....+--+....++.. ....++++=....+......+++.|++.++.--+ +.+++...+
T Consensus 40 ~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~-~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~-~~~~L~~~i 117 (239)
T PRK09468 40 QMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQ-NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPF-NPRELLARI 117 (239)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCC-CHHHHHHHH
Confidence 34455666789999999887544433333333321 1234444433444556677889999998765443 456666555
Q ss_pred HHc
Q 018508 177 SYC 179 (355)
Q Consensus 177 ~a~ 179 (355)
..+
T Consensus 118 ~~~ 120 (239)
T PRK09468 118 RAV 120 (239)
T ss_pred HHH
Confidence 544
No 426
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=52.03 E-value=89 Score=28.99 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCcEEEEEEe---------cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 83 NETLYGLFLL---------SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 83 G~~~~gl~v~---------~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
.-|++|+|=. .+.-+.++.+..+|+|.|-||.-.-+-- +++.++++.++.
T Consensus 32 ~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~li~~i~~-------------------- 90 (192)
T PF04131_consen 32 DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEELIREIKE-------------------- 90 (192)
T ss_dssp -S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHHHHHHHHH--------------------
T ss_pred CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHHHHHHHHH--------------------
Confidence 5699999853 1234567888899999999999776432 445555554433
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHH
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVS 177 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~ 177 (355)
.+ .+++--|.|.||+..+.+
T Consensus 91 --~~--~l~MADist~ee~~~A~~ 110 (192)
T PF04131_consen 91 --KY--QLVMADISTLEEAINAAE 110 (192)
T ss_dssp --CT--SEEEEE-SSHHHHHHHHH
T ss_pred --hC--cEEeeecCCHHHHHHHHH
Confidence 33 445566677777766655
No 427
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=52.02 E-value=1.6e+02 Score=25.54 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccC-C--------chhH
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAM-P--------HDAP 291 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~-d--------~~~a 291 (355)
+.+.+.++-+.+.-.|+++|++.. ..++.+.+.+..+..+.+.++.. + .+.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEV 71 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHH
Confidence 556666655555457999999986 22333333332102332222222 1 1557
Q ss_pred HHHHHCCCCEEEecchHHH
Q 018508 292 LEMKSRGYHMVSGAVDVGL 310 (355)
Q Consensus 292 ~~~~~~G~~~vs~~~D~~l 310 (355)
+.+.+.|++.+.+......
T Consensus 72 ~~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 72 EEAIDLGADEIDVVINIGS 90 (201)
T ss_pred HHHHHcCCCEEEEeccHHH
Confidence 7888999998877655543
No 428
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.65 E-value=2.1e+02 Score=26.76 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=45.7
Q ss_pred cEEEEEEecCCHH-HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHH-HHHHHHh
Q 018508 85 TLYGLFLLSFSPT-LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPT-WAKKALD 155 (355)
Q Consensus 85 ~~~gl~v~~~sp~-~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~-~i~~aLd 155 (355)
..+-.-+...+|+ .++..+.+|+|.|.+=.|.. ....+.+..++..|..+-|=+|...+. .+...++
T Consensus 59 ~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~----~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 59 APIDVHLMVKPVDRIIPDFAKAGASMITFHVEAS----EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred CCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCc----ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 3455555566776 67899999999999999954 234556666667787777777776553 4554443
No 429
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=51.40 E-value=1.7e+02 Score=25.76 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=56.1
Q ss_pred hHHHHHHHcCCcEEEEEEecCCH-HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSP-TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp-~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|..-...+ . ...+. ...+.+....+|.|++|++....+--++...++. ....+.++=....+......
T Consensus 24 ~~l~~~L~~~~~~v--~-~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~--~~~~pii~l~~~~~~~~~~~ 98 (240)
T PRK10710 24 QLLIDYLQAASYAT--T-LLSHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRR--FSDIPIVMVTAKIEEIDRLL 98 (240)
T ss_pred HHHHHHHHHCCCEE--E-EeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHh--cCCCCEEEEEcCCCHHHHHH
Confidence 34566665422222 2 23343 3556666777999999998765443444444442 23344444334445556778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++.+|+++++.--+ +.+++...++.
T Consensus 99 ~~~~ga~~~l~kp~-~~~~L~~~i~~ 123 (240)
T PRK10710 99 GLEIGADDYICKPY-SPREVVARVKT 123 (240)
T ss_pred HHhcCCCeEEECCC-CHHHHHHHHHH
Confidence 89999988665444 44666544443
No 430
>PRK11173 two-component response regulator; Provisional
Probab=51.24 E-value=1.8e+02 Score=25.94 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=54.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKA 153 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~a 153 (355)
..++..|..-...+ ....+.....+.+....+|.|++|++-...+--++...++. ....+.++=....+......+
T Consensus 17 ~~l~~~L~~~g~~v--~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~--~~~~pii~lt~~~~~~~~~~~ 92 (237)
T PRK11173 17 NTLKSIFEAEGYDV--FEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELRE--QANVALMFLTGRDNEVDKILG 92 (237)
T ss_pred HHHHHHHHHcCCEE--EEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhc--CCCCCEEEEECCCCHHHHHHH
Confidence 34556665322222 22223334556666778999999998654443333333432 234444544444455566778
Q ss_pred HhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 154 LDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 154 LdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++.|++..+.--+ +.+++...++.
T Consensus 93 ~~~ga~d~l~kP~-~~~eL~~~i~~ 116 (237)
T PRK11173 93 LEIGADDYITKPF-NPRELTIRARN 116 (237)
T ss_pred HHCCCCEEEECCC-CHHHHHHHHHH
Confidence 9999987664433 45666544433
No 431
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.16 E-value=1.2e+02 Score=29.44 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC--------CCHHH----HHHHHHHHHhCCCCeE------EcCCCC
Q 018508 84 ETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP--------GGISD----ALACLHALAATGTPAI------LRLPES 145 (355)
Q Consensus 84 ~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~--------~~~~~----a~~~i~a~~~~g~~~i------VRV~~~ 145 (355)
...+..++ .+..-++.+..+|.|+|-+=.--+. .+.++ +...+..++..|..+. ...+..
T Consensus 72 ~~~~~~l~--~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~ 149 (287)
T PRK05692 72 GVTYAALT--PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYE 149 (287)
T ss_pred CCeEEEEe--cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCC
Confidence 35555555 4888899999999998655432221 12223 3344555555565431 111211
Q ss_pred ---CHH----HHHHHHhcCCCeEeecCC---CCHHHHHHHHHHcC
Q 018508 146 ---CPT----WAKKALDLGPQGVMFPMI---DSPEAAKEAVSYCR 180 (355)
Q Consensus 146 ---~~~----~i~~aLdaGa~GImvP~V---esaeea~~vv~a~~ 180 (355)
++. .++++.++|++.|.++-. -+|+++.++++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 194 (287)
T PRK05692 150 GEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVL 194 (287)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHH
Confidence 233 357788999999998854 58999999998886
No 432
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=51.10 E-value=33 Score=29.76 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHh--ccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce
Q 018508 221 SEEGVKRAEDIA--AVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 221 T~~av~nieeIa--avpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
+...+.++++.. .-|.+-.+++|.||+.... .-.++.+.+++++..+++++..+
T Consensus 44 ~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~------~~~~~~~~~~~li~~~~~~~~~~ 99 (183)
T cd04501 44 TSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNT------SLEMIKDNIRSMVELAEANGIKV 99 (183)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCccccCC------CHHHHHHHHHHHHHHHHHCCCcE
Confidence 345666776643 3466778999999996422 23468888999999999887653
No 433
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=50.83 E-value=1.7e+02 Score=25.60 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=53.4
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHH-HHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPT-LAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~-~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..++..|...... +. ...+.. ..+.+ ...+|.|++|++....+--+....++. ....+.++=....+......
T Consensus 15 ~~l~~~l~~~~~~--v~-~~~~~~~~~~~~-~~~~d~vl~d~~~~~~~g~~~~~~l~~--~~~~~ii~lt~~~~~~~~~~ 88 (232)
T PRK10955 15 SLLKELLEMEGFN--VI-VAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDTLKELRQ--THQTPVIMLTARGSELDRVL 88 (232)
T ss_pred HHHHHHHHHCCCE--EE-EeCCHHHHHHHh-hcCCCEEEEeCCCCCCcHHHHHHHHHh--cCCCcEEEEECCCCHHHHHH
Confidence 3456666542222 22 233443 33444 346999999998764443333333332 22334343333445566778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHc
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYC 179 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~ 179 (355)
+++.|+++++.-- -+.+++...++.+
T Consensus 89 ~~~~ga~~~l~kp-~~~~~l~~~i~~~ 114 (232)
T PRK10955 89 GLELGADDYLPKP-FNDRELVARIRAI 114 (232)
T ss_pred HHHcCCCEEEcCC-CCHHHHHHHHHHH
Confidence 9999999876543 4556665555443
No 434
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.80 E-value=1.4e+02 Score=28.70 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=57.2
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcC-----CCCCHH----HHHHHHhcCCCeEeecC
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRL-----PESCPT----WAKKALDLGPQGVMFPM 165 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV-----~~~~~~----~i~~aLdaGa~GImvP~ 165 (355)
....++.+..+|.|+|-+ -....+.+.+...+..++..|..+.+=+ ...++. .++++.++|++.|.++-
T Consensus 93 ~~~di~~~~~~g~~~iri--~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 170 (275)
T cd07937 93 VELFVEKAAKNGIDIFRI--FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKD 170 (275)
T ss_pred HHHHHHHHHHcCCCEEEE--eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 456778888889998666 2233456777777777776665433211 222333 35677889999888875
Q ss_pred C---CCHHHHHHHHHHcCC
Q 018508 166 I---DSPEAAKEAVSYCRF 181 (355)
Q Consensus 166 V---esaeea~~vv~a~~~ 181 (355)
. -+|+++..+++.++.
T Consensus 171 T~G~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 171 MAGLLTPYAAYELVKALKK 189 (275)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4 578999999988863
No 435
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.54 E-value=1.4e+02 Score=24.90 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred hHHHHHHHc-CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCC-eEEcCCCCC-HHHH
Q 018508 74 ESLKYRLQS-NETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTP-AILRLPESC-PTWA 150 (355)
Q Consensus 74 n~lk~~L~~-G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~-~iVRV~~~~-~~~i 150 (355)
+-+...|+. |-.++.+-...+-.+.++.+...++|+|.|=.-.. ...+.+++.++.++..+.. +.|=+.+.. +...
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~ 95 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG-GHMTLFPEVIELLRELGAGDILVVGGGIIPPEDY 95 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch-hhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHH
Confidence 445556664 44555555556667888999999999999965542 3456667777776655332 111122222 3446
Q ss_pred HHHHhcCCCeEeecCCCCHHHHHH
Q 018508 151 KKALDLGPQGVMFPMIDSPEAAKE 174 (355)
Q Consensus 151 ~~aLdaGa~GImvP~Vesaeea~~ 174 (355)
.++..+|.++++=|.. +.+++-.
T Consensus 96 ~~~~~~G~d~~~~~~~-~~~~~~~ 118 (122)
T cd02071 96 ELLKEMGVAEIFGPGT-SIEEIID 118 (122)
T ss_pred HHHHHCCCCEEECCCC-CHHHHHH
Confidence 7788899999987774 5565543
No 436
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.27 E-value=67 Score=30.62 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCeEeecCCC------CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEc-
Q 018508 148 TWAKKALDLGPQGVMFPMID------SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVE- 220 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Ve------saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIE- 220 (355)
..+..+++.|++||++.-.. |.+|-+++++.+. +..++++.+++.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~--------------------------~~~~~~~~vi~gv~~ 78 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVV--------------------------EAVNGRVPVIAGTGS 78 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHH--------------------------HHhCCCCcEEeccCC
Q ss_pred --cHHHHHHHHHHhccCCccEEEECh
Q 018508 221 --SEEGVKRAEDIAAVDGVDCVQMGP 244 (355)
Q Consensus 221 --T~~av~nieeIaavpgVD~l~iGp 244 (355)
|.++++.+....+. |+|++++.+
T Consensus 79 ~~~~~~~~~a~~a~~~-G~d~v~~~~ 103 (284)
T cd00950 79 NNTAEAIELTKRAEKA-GADAALVVT 103 (284)
T ss_pred ccHHHHHHHHHHHHHc-CCCEEEEcc
No 437
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=50.24 E-value=1.1e+02 Score=27.98 Aligned_cols=65 Identities=18% Similarity=0.092 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCcEE-EEeCCCC----CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeec
Q 018508 97 TLAEISGLAGYDFV-VVDMEHG----PGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 97 ~~~e~aa~~G~D~v-ilDlEh~----~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP 164 (355)
+.++.+...|+|.+ +.|.... ..+.+....+.+ ....++++==.-.+...+.+++..|++|||+-
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~---~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVK---AVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 45667778888854 4555433 223333333332 23344443322235667888888888888873
No 438
>PRK10403 transcriptional regulator NarP; Provisional
Probab=50.19 E-value=1.6e+02 Score=25.09 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=57.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
..+++.|... .-+.......+ ....+.+....+|.|++|+.....+-.+....++.. ....++++=....+......
T Consensus 20 ~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~~~~~~~~l~~~-~~~~~ii~l~~~~~~~~~~~ 97 (215)
T PRK10403 20 RGVRQLLELD-PGFEVVAEAGDGASAIDLANRLDPDVILLDLNMKGMSGLDTLNALRRD-GVTAQIIILTVSDASSDVFA 97 (215)
T ss_pred HHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHh-CCCCeEEEEeCCCChHHHHH
Confidence 4566666531 11222222333 345556666779999999876544333333333321 12234444344445666778
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+++.|+++++.- -.+.+++...++.+.
T Consensus 98 ~~~~g~~~~i~k-p~~~~~l~~~i~~~~ 124 (215)
T PRK10403 98 LIDAGADGYLLK-DSDPEVLLEAIRAGA 124 (215)
T ss_pred HHHcCCCeEEec-CCCHHHHHHHHHHHh
Confidence 899999986543 355677776666543
No 439
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=50.08 E-value=2.6e+02 Score=30.98 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHHHHhcCCCe--EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHH
Q 018508 149 WAKKALDLGPQG--VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~G--ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~a 224 (355)
++.++.++|++- |-+|-.+.++-++.+.+.++. +|+ ++.+++=| .-..|
T Consensus 115 Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~-----~g~----------------------~iPLVADIHF~~~~A 167 (733)
T PLN02925 115 QVMRIADKGADIVRITVQGKKEADACFEIKNTLVQ-----KGY----------------------NIPLVADIHFAPSVA 167 (733)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhh-----cCC----------------------CCCEEEecCCCHHHH
Confidence 466677777764 456666666666666665542 111 23444443 34445
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhhc------CCC---CCCCCHHHHHHHHHHHHHHHhCCCce-eecccCC-------
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSASM------GYL---WDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMP------- 287 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~sl------G~~---~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d------- 287 (355)
++.++. +|.|=|-|+-+.-.- -+. ++.+...+.+....++..|+++|+.+ +|.-.+.
T Consensus 168 l~a~~~------vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~ 241 (733)
T PLN02925 168 LRVAEC------FDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMS 241 (733)
T ss_pred HHHHHh------cCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 544433 455656555433210 011 11112234455556899999999875 3322221
Q ss_pred -----c--------hhHHHHHHCCCCEEEec---chHHHHHHHHHHHHHHHHH
Q 018508 288 -----H--------DAPLEMKSRGYHMVSGA---VDVGLFRSAAVEDVARFKM 324 (355)
Q Consensus 288 -----~--------~~a~~~~~~G~~~vs~~---~D~~ll~~~~~~~~~~~r~ 324 (355)
+ +.++.+.++||.-+.++ +|+..+-.+++..+..+..
T Consensus 242 ~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 242 YYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHh
Confidence 1 45667889999876654 8899999999998888755
No 440
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=49.81 E-value=78 Score=28.46 Aligned_cols=71 Identities=13% Similarity=0.005 Sum_probs=48.5
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCC-CCCHHHHHHHHhcCCCeEee
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLP-ESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~-~~~~~~i~~aLdaGa~GImv 163 (355)
+-+-..+.+.++.+..+|+|.|.||-- +.++.++.+..++..+..+.+=+. +.+...+......|+|.|.+
T Consensus 83 I~VEv~~~ee~~ea~~~g~d~I~lD~~----~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 83 IEVEVENLEEAEEALEAGADIIMLDNM----SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEEEESSHHHHHHHHHTT-SEEEEES-----CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEEEcCCHHHHHHHHHhCCCEEEecCc----CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 666777888999999999999999975 557777777655433333333332 34566788888999998865
No 441
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=49.79 E-value=1e+02 Score=30.44 Aligned_cols=103 Identities=23% Similarity=0.226 Sum_probs=56.9
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeC-CCCC--C-CHHHHHHHHHHHH-hCCCCeEEcCCC-CCH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDM-EHGP--G-GISDALACLHALA-ATGTPAILRLPE-SCP 147 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDl-Eh~~--~-~~~~a~~~i~a~~-~~g~~~iVRV~~-~~~ 147 (355)
..+-+++++.. +-+|...++++.++++...|+|.|++-- |-+. . +......++..+. ....++++= .+ .+.
T Consensus 126 ~~~i~~l~~~g--i~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaA-GGI~dg 202 (330)
T PF03060_consen 126 PEVIERLHAAG--IKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAA-GGIADG 202 (330)
T ss_dssp HHHHHHHHHTT---EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEE-SS--SH
T ss_pred HHHHHHHHHcC--CccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEe-cCcCCH
Confidence 55666676543 3455678999999999999999999884 4432 1 2222333333332 233343331 22 256
Q ss_pred HHHHHHHhcCCCeEee-------cCCCCHHHHHHHHHHc
Q 018508 148 TWAKKALDLGPQGVMF-------PMIDSPEAAKEAVSYC 179 (355)
Q Consensus 148 ~~i~~aLdaGa~GImv-------P~Vesaeea~~vv~a~ 179 (355)
..+..+|..||+||++ +-+...+..++.+-..
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~~a 241 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEESGASDAYKQALVDA 241 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHHHG
T ss_pred HHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHHhC
Confidence 6799999999999874 3334445555554444
No 442
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=49.52 E-value=2.1e+02 Score=26.09 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=54.8
Q ss_pred hHHHHHHHc-CCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCC---CCCCCHHHHHHHHHHHH--hCCCCeEEcCCCCCH
Q 018508 74 ESLKYRLQS-NETLYGLFLLSFSPTLAEISGLAGYDFVVVDME---HGPGGISDALACLHALA--ATGTPAILRLPESCP 147 (355)
Q Consensus 74 n~lk~~L~~-G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlE---h~~~~~~~a~~~i~a~~--~~g~~~iVRV~~~~~ 147 (355)
..+++.|.. +....-........+.++.+.....|.|++|++ +.+...+ .++.+. ..+..++|=....++
T Consensus 14 ~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~----~i~~i~~~~p~~~iivlt~~~~~ 89 (207)
T PRK15411 14 LGLTGYLLSRGVKKREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQ----RIKQIINQHPNTLFIVFMAIANI 89 (207)
T ss_pred HHHHHHHHhCCCcceEEEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChHH----HHHHHHHHCCCCeEEEEECCCch
Confidence 456777753 322111122233444566666677999999964 2232222 333332 223343333322233
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
... .++..|+.+-.++|-.+++++.++++.+.
T Consensus 90 ~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~ 121 (207)
T PRK15411 90 HFD-EYLLVRKNLLISSKSIKPESLDDLLGDIL 121 (207)
T ss_pred hHH-HHHHHHhhceeeeccCCHHHHHHHHHHHH
Confidence 322 35555665556799999999998887764
No 443
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=49.52 E-value=77 Score=30.58 Aligned_cols=77 Identities=25% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCC--CC----
Q 018508 96 PTLAEISGLAGYDF-VVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMI--DS---- 168 (355)
Q Consensus 96 p~~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~V--es---- 168 (355)
.+.++.....|+++ -++|| +..+.+..++++++. +.++.| -.+...+.+++.+++|++.|++--. +.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~~n~~~i~~i~~~~---~~~v~v-GGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~ 114 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GPNNDDAAKEALHAY---PGGLQV-GGGINDTNAQEWLDEGASHVIVTSWLFTKGKFD 114 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CCCcHHHHHHHHHhC---CCCEEE-eCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCC
Confidence 36788889999998 58999 533666666666542 222221 1223357899999999999998541 22
Q ss_pred HHHHHHHHHH
Q 018508 169 PEAAKEAVSY 178 (355)
Q Consensus 169 aeea~~vv~a 178 (355)
++.++++.+.
T Consensus 115 ~~~~~~i~~~ 124 (253)
T TIGR02129 115 LKRLKEIVSL 124 (253)
T ss_pred HHHHHHHHHH
Confidence 6677776664
No 444
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=49.49 E-value=1.8e+02 Score=31.62 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=85.1
Q ss_pred HHHHHHhcCCCe--EeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEE--ccHHH
Q 018508 149 WAKKALDLGPQG--VMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQV--ESEEG 224 (355)
Q Consensus 149 ~i~~aLdaGa~G--ImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mI--ET~~a 224 (355)
++.++.++|++- |-+|-.+.++-++.+.+.++. +|+ ++.+++=| .-..|
T Consensus 46 Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~-----~G~----------------------~iPLVADIHF~~~~A 98 (611)
T PRK02048 46 QAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRS-----QGY----------------------MVPLVADVHFNPKVA 98 (611)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhh-----cCC----------------------CCCEEEecCCCcHHH
Confidence 567777888874 556777777777777776542 121 23444433 33445
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhh---cC---CC---CCCCCHHHHHHHHHHHHHHHhCCCce-eecccCC-------
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSAS---MG---YL---WDPGHRKVREMMRVAEKGVLGGGKAY-LAGFAMP------- 287 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~s---lG---~~---~~~~~p~v~~ai~~iv~aa~a~g~~~-~g~~~~d------- 287 (355)
+..++. +|.|=|-|+-+.-. .. +. ++.+...+.+.+..++.+|+++|+++ +|.-.++
T Consensus 99 ~~a~~~------v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~ 172 (611)
T PRK02048 99 DVAAQY------AEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMS 172 (611)
T ss_pred HHHHHh------hCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHH
Confidence 444443 55666666654321 11 00 11123345566778899999999875 3322221
Q ss_pred -----c--------hhHHHHHHCCCCEEEec---chHHHHHHHHHHHHHHHHH
Q 018508 288 -----H--------DAPLEMKSRGYHMVSGA---VDVGLFRSAAVEDVARFKM 324 (355)
Q Consensus 288 -----~--------~~a~~~~~~G~~~vs~~---~D~~ll~~~~~~~~~~~r~ 324 (355)
+ +.++.+.++||.-+.++ ++...+-.+.+..+..+..
T Consensus 173 ~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~ 225 (611)
T PRK02048 173 RYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA 225 (611)
T ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 1 44667789999876654 6777778888888887753
No 445
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=49.29 E-value=17 Score=23.60 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCeEe
Q 018508 147 PTWAKKALDLGPQGVM 162 (355)
Q Consensus 147 ~~~i~~aLdaGa~GIm 162 (355)
...++.+|++|++|||
T Consensus 10 ~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 10 PASWRELLDLGVDGIM 25 (30)
T ss_dssp HHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHcCCCEee
Confidence 5568999999999998
No 446
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.27 E-value=96 Score=29.67 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=41.2
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCC--------CCH-HHH---HHHHhcCCCeEee
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPE--------SCP-TWA---KKALDLGPQGVMF 163 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~--------~~~-~~i---~~aLdaGa~GImv 163 (355)
+.++.+...|||.|=|----.....++....|+.+...|..+..=+.. .++ .+| ++.|++||+-||+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~Vii 153 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVII 153 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 344578889999775544333556677777787776555433322211 122 234 4559999999997
No 447
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=49.22 E-value=40 Score=30.07 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHhc--cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce
Q 018508 221 SEEGVKRAEDIAA--VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 221 T~~av~nieeIaa--vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
|..++..+++.+. -|.+-.|++|.||+.. | ....++...+++++..+++++..+
T Consensus 56 t~~~~~rl~~~l~~~~pd~Vii~~GtND~~~--~----~~~~~~~~~l~~li~~~~~~~~~~ 111 (191)
T PRK10528 56 SQQGLARLPALLKQHQPRWVLVELGGNDGLR--G----FPPQQTEQTLRQIIQDVKAANAQP 111 (191)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcCcc--C----CCHHHHHHHHHHHHHHHHHcCCCE
Confidence 3467778887663 4677788999999743 2 223467788889999998876553
No 448
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=48.84 E-value=2.5e+02 Score=27.29 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=44.1
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCC--HHHHHHHHhcCCCeEe-ecC
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESC--PTWAKKALDLGPQGVM-FPM 165 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~--~~~i~~aLdaGa~GIm-vP~ 165 (355)
.+..+..+.+....+|.|++|++-...+--++...++. ....++++-....+ .....++++.|+..++ -|.
T Consensus 33 ~~~~eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~~--~~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 33 TDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIMA--ERPCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred CCHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH--HCCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 33455667777778999999998654443444444433 23456665554432 4456688999997655 454
No 449
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=47.98 E-value=1.7e+02 Score=29.52 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=47.4
Q ss_pred HHHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCCC---CHHHHHHHHHHHHh-CCC--CeEEcCCCCCHHHHH
Q 018508 79 RLQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGPG---GISDALACLHALAA-TGT--PAILRLPESCPTWAK 151 (355)
Q Consensus 79 ~L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~~---~~~~a~~~i~a~~~-~g~--~~iVRV~~~~~~~i~ 151 (355)
-||.|+...+.+++.. .-++++.+..+|+|.|=+=-=-+|- ...+..+.++++.. .+. ..+++ ....+.
T Consensus 53 TlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~----n~~die 128 (347)
T PLN02746 53 GPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTP----NLKGFE 128 (347)
T ss_pred CCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcC----CHHHHH
Confidence 3677877777766553 4567788889999876433111111 11122333333322 222 23432 567899
Q ss_pred HHHhcCCCeEeec
Q 018508 152 KALDLGPQGVMFP 164 (355)
Q Consensus 152 ~aLdaGa~GImvP 164 (355)
+++++|++.|.+.
T Consensus 129 ~A~~~g~~~v~i~ 141 (347)
T PLN02746 129 AAIAAGAKEVAVF 141 (347)
T ss_pred HHHHcCcCEEEEE
Confidence 9999999987766
No 450
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=47.84 E-value=1.4e+02 Score=26.53 Aligned_cols=89 Identities=12% Similarity=-0.086 Sum_probs=49.3
Q ss_pred hHHHHHHHcCCcEEEEEEecCC-HHHHHHhhhcCCcEEEEeCCCCCCCHH----HHHHHHHHHH-hCC----CCeEEcCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFS-PTLAEISGLAGYDFVVVDMEHGPGGIS----DALACLHALA-ATG----TPAILRLP 143 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~s-p~~~e~aa~~G~D~vilDlEh~~~~~~----~a~~~i~a~~-~~g----~~~iVRV~ 143 (355)
....+.++.-...+|+.+...+ .+.++... .+.|++.++.=|...+++ ...+.++.++ ..+ ..+++=..
T Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G 173 (211)
T cd00429 95 HRTIQLIKELGMKAGVALNPGTPVEVLEPYL-DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG 173 (211)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHHH-hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3445555554566777775433 34455443 338999888644221111 2222333221 111 12343345
Q ss_pred CCCHHHHHHHHhcCCCeEee
Q 018508 144 ESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 144 ~~~~~~i~~aLdaGa~GImv 163 (355)
+..+..+..+++.|++||++
T Consensus 174 GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 174 GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 77888899999999999775
No 451
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=47.78 E-value=72 Score=30.14 Aligned_cols=128 Identities=18% Similarity=0.088 Sum_probs=71.4
Q ss_pred HHHHhhhcCCcEEEEeCCCCC----C--CHHHHHHHHHHHHhCCCCeEEcCCCCCH------------HHHHHHHhcCC-
Q 018508 98 LAEISGLAGYDFVVVDMEHGP----G--GISDALACLHALAATGTPAILRLPESCP------------TWAKKALDLGP- 158 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~~----~--~~~~a~~~i~a~~~~g~~~iVRV~~~~~------------~~i~~aLdaGa- 158 (355)
.++++...|++||++- |+- + +.+...+-.+.+...|..+++=|...-. .+++...|..-
T Consensus 78 S~~mlkd~G~~wVIlG--HSERR~~fgEsd~~i~~K~~~Al~eGl~ViaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~ 155 (247)
T KOG1643|consen 78 SAEMLKDLGAEWVILG--HSERRHVFGESDEFIADKTAHALAEGLKVIACIGETLEEREAGKTLDVVFRQLKAIADKVKD 155 (247)
T ss_pred CHHHHHhCCCCEEEec--chhhhhhhCCchHHHHHHHHHHHHcCCeEEEEecccHHhhhcCchHHHHHHHHHHHHHhcCC
Confidence 4567788899999974 441 2 1222233334444567777777755421 23455555543
Q ss_pred -CeEee----------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHH
Q 018508 159 -QGVMF----------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKR 227 (355)
Q Consensus 159 -~GImv----------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~n 227 (355)
..|++ =++-|++|++++...+|.--.++-|-. ....+.++ -=-+. --.|
T Consensus 156 w~niviAYEPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~------------------Va~~~RIi-YGGSV-~g~N 215 (247)
T KOG1643|consen 156 WSNIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDA------------------VASSTRII-YGGSV-NGGN 215 (247)
T ss_pred ccceEEEeeceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhh------------------hhhceEEE-ecccc-cccc
Confidence 34554 478999999999988753211110000 00011111 00011 1258
Q ss_pred HHHHhccCCccEEEEChhhH
Q 018508 228 AEDIAAVDGVDCVQMGPLDL 247 (355)
Q Consensus 228 ieeIaavpgVD~l~iGp~DL 247 (355)
..||+..|.||++.+|-.-|
T Consensus 216 ~~el~~~~diDGFLVGGaSL 235 (247)
T KOG1643|consen 216 CKELAKKPDIDGFLVGGASL 235 (247)
T ss_pred HHHhcccccccceEEcCccc
Confidence 88999999999999997644
No 452
>PRK08999 hypothetical protein; Provisional
Probab=47.71 E-value=76 Score=30.62 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=46.1
Q ss_pred ecCCHHHHHHhhhcCCcEEEEeCCCCC--------CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee
Q 018508 92 LSFSPTLAEISGLAGYDFVVVDMEHGP--------GGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 92 ~~~sp~~~e~aa~~G~D~vilDlEh~~--------~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv 163 (355)
...+.+.+..+...|+||+++=-=... .+.+.++...+ .-..|+|=+.+.+...+..++..|++||-+
T Consensus 232 S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~----~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~ 307 (312)
T PRK08999 232 SCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIA----GVPLPVYALGGLGPGDLEEAREHGAQGIAG 307 (312)
T ss_pred ecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHH----hCCCCEEEECCCCHHHHHHHHHhCCCEEEE
Confidence 346777778888899999987533221 22333333322 223567778889999999999999999864
No 453
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=47.69 E-value=1.4e+02 Score=29.70 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHhhhc--CCcEEEEeCCCC-------CCCHHHHHHHHHHHHh-CC-----CCeEEcCCCCCH----H-HHHHHHhc
Q 018508 97 TLAEISGLA--GYDFVVVDMEHG-------PGGISDALACLHALAA-TG-----TPAILRLPESCP----T-WAKKALDL 156 (355)
Q Consensus 97 ~~~e~aa~~--G~D~vilDlEh~-------~~~~~~a~~~i~a~~~-~g-----~~~iVRV~~~~~----~-~i~~aLda 156 (355)
+.++.+... ++|++.+.+-.- ..+.+.+.+++++++. .+ .+++|++..... . ..+.+.++
T Consensus 158 d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~ 237 (344)
T PRK05286 158 DYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEH 237 (344)
T ss_pred HHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444433 499999987321 1234556667776653 33 799999985422 1 24566788
Q ss_pred CCCeEeecC
Q 018508 157 GPQGVMFPM 165 (355)
Q Consensus 157 Ga~GImvP~ 165 (355)
|++||.+=-
T Consensus 238 Gadgi~~~n 246 (344)
T PRK05286 238 GIDGVIATN 246 (344)
T ss_pred CCcEEEEeC
Confidence 999988743
No 454
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=47.54 E-value=20 Score=30.97 Aligned_cols=34 Identities=32% Similarity=0.387 Sum_probs=26.4
Q ss_pred CeEEcCCCC---CHHHHHHHHhcCCCeEeecCCCCHH
Q 018508 137 PAILRLPES---CPTWAKKALDLGPQGVMFPMIDSPE 170 (355)
Q Consensus 137 ~~iVRV~~~---~~~~i~~aLdaGa~GImvP~Vesae 170 (355)
..++||+-. ++..+.++|.-|+|||+|--+.--|
T Consensus 30 vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 30 VRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred eEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccc
Confidence 346776543 6889999999999999998876433
No 455
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.53 E-value=33 Score=34.79 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=61.4
Q ss_pred cCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCC----HHHHHHHHHHHHhCCCCeEE--cCCCCCHHHH-HHHH
Q 018508 82 SNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGG----ISDALACLHALAATGTPAIL--RLPESCPTWA-KKAL 154 (355)
Q Consensus 82 ~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~----~~~a~~~i~a~~~~g~~~iV--RV~~~~~~~i-~~aL 154 (355)
.|-|++.+|-..-.|. .+++. |.|.|++|++|...- ..++..++.++...+++++| |.|......+ .-+|
T Consensus 57 tglpVySLYG~~~~Pt-~~mL~--~vDvlvfDiQDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDRPNPl~G~~veGp~l 133 (365)
T PF07075_consen 57 TGLPVYSLYGKTRKPT-PEMLK--GVDVLVFDIQDVGVRFYTYISTLYYVMEAAAENGKPVVVLDRPNPLGGRYVEGPIL 133 (365)
T ss_pred CCCeEEECCCCCCCCC-HHHHh--CCCEEEEeCccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCCCCccccCCc
Confidence 4678888885543332 23333 899999999998643 34566778888888888766 8888543221 1233
Q ss_pred hc------CCCeEeecCCCCHHHHHHHHHHcCCC
Q 018508 155 DL------GPQGVMFPMIDSPEAAKEAVSYCRFP 182 (355)
Q Consensus 155 da------Ga~GImvP~Vesaeea~~vv~a~~~p 182 (355)
+. |...|=+=|=-|.-|+......-...
T Consensus 134 ~~~~~SFvG~~~iP~rHGmTiGELA~~~n~e~~~ 167 (365)
T PF07075_consen 134 DPEFRSFVGMYPIPIRHGMTIGELARMFNGEFWL 167 (365)
T ss_pred CcccccccCCCccccccCCCHHHHHHHHHhhcCC
Confidence 32 33334444446788887777765544
No 456
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=47.52 E-value=2.8e+02 Score=27.14 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=52.3
Q ss_pred chHHHHHHHc-CCcEEEEEEe-cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCC-CCHHH
Q 018508 73 PESLKYRLQS-NETLYGLFLL-SFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPE-SCPTW 149 (355)
Q Consensus 73 ~n~lk~~L~~-G~~~~gl~v~-~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~-~~~~~ 149 (355)
.+.+++.+.. |-. +...+. ..++..++.+...|++.+- ..+..+++.+.. .|...+.=.+. ..+..
T Consensus 21 ~~~l~~~~~~~~~~-l~~~~K~h~~~~i~~~~~~~G~~~~~------vas~~Ea~~~~~----~G~~~ili~~~~~~~~~ 89 (358)
T cd06819 21 IKRMAAFAKAHGVR-LRPHAKTHKCPAIARRQIAAGAVGVC------CQKLSEAEVMAA----AGIRDILITNEVVGPAK 89 (358)
T ss_pred HHHHHHHHHHcCCc-ccccchhhcCHHHHHHHHhCCCCcEE------EccHHHHHHHHH----CCCCeEEEECCcCCHHH
Confidence 4556666654 422 222222 4678888888888876544 244556554433 34333222222 23333
Q ss_pred HHHHHhcCC-CeEeecCCCCHHHHHHHHHHcC
Q 018508 150 AKKALDLGP-QGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 150 i~~aLdaGa-~GImvP~Vesaeea~~vv~a~~ 180 (355)
+.+.++... .+ +.+.|++.++++.+.+.++
T Consensus 90 ~~~~~~~~~~~~-i~~~vDs~~~l~~l~~~a~ 120 (358)
T cd06819 90 IARLAALARRAP-LIVCVDHPDNVRALAAAAV 120 (358)
T ss_pred HHHHHHHhcCCC-EEEEECCHHHHHHHHHHHH
Confidence 333332211 23 5789999999999988775
No 457
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.43 E-value=2.4e+02 Score=26.28 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCceeecccCCchhHHHHHHCCCCEEEec
Q 018508 268 VAEKGVLGGGKAYLAGFAMPHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 268 ~iv~aa~a~g~~~~g~~~~d~~~a~~~~~~G~~~vs~~ 305 (355)
.+++.|++.++..+.|. .++.++..+.++|++.+-+-
T Consensus 99 ~vi~~a~~~~i~~iPG~-~TptEi~~a~~~Ga~~vKlF 135 (212)
T PRK05718 99 PLLKAAQEGPIPLIPGV-STPSELMLGMELGLRTFKFF 135 (212)
T ss_pred HHHHHHHHcCCCEeCCC-CCHHHHHHHHHCCCCEEEEc
Confidence 35567777888766443 45666888899999987653
No 458
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=47.41 E-value=1.8e+02 Score=24.90 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=64.7
Q ss_pred chHHHHHHHcCCc-EEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCC---CeEEcCCCCC-H
Q 018508 73 PESLKYRLQSNET-LYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGT---PAILRLPESC-P 147 (355)
Q Consensus 73 ~n~lk~~L~~G~~-~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~---~~iVRV~~~~-~ 147 (355)
.|-++..|+.+.- ++-+-+..+..+.++.+.+.++|+|.|-.=.+ ...+.+..++..++..+. .++| .+.- .
T Consensus 19 ~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~-~~~~~~~~~~~~L~~~g~~~i~viv--GG~~~~ 95 (132)
T TIGR00640 19 AKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAG-GHLTLVPALRKELDKLGRPDILVVV--GGVIPP 95 (132)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchh-hhHHHHHHHHHHHHhcCCCCCEEEE--eCCCCh
Confidence 4667777776553 44444444455688999999999999844332 234556667777765443 2333 3222 3
Q ss_pred HHHHHHHhcCCCeEeecCCCCHHHHHHHHH
Q 018508 148 TWAKKALDLGPQGVMFPMIDSPEAAKEAVS 177 (355)
Q Consensus 148 ~~i~~aLdaGa~GImvP~Vesaeea~~vv~ 177 (355)
.......++|.++++-|..+-.+-+..+.+
T Consensus 96 ~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 96 QDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 346678889999999999855555555544
No 459
>PLN02535 glycolate oxidase
Probab=47.17 E-value=89 Score=31.70 Aligned_cols=70 Identities=21% Similarity=0.108 Sum_probs=41.8
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCC-C--CCHHHHHHHHHHH-Hh-CCCCeEEcCCCC-CHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHG-P--GGISDALACLHAL-AA-TGTPAILRLPES-CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~-~--~~~~~a~~~i~a~-~~-~g~~~iVRV~~~-~~~~i~~aLdaGa~GImv 163 (355)
+-+++.++.+...|+|+|++.---+ . ....++ ..+..+ +. .+..+++--.+. ....+.++|.+||++|++
T Consensus 231 V~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~-~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~v 306 (364)
T PLN02535 231 VLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATI-SVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLV 306 (364)
T ss_pred CCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHH-HHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3688889999999999998864222 1 111122 222222 11 122334433333 356789999999999887
No 460
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=47.16 E-value=1.2e+02 Score=31.07 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=42.3
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCC-------HHHHHHHHHHHHhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGG-------ISDALACLHALAATGTPAILRLPES-CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~-------~~~a~~~i~a~~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImv 163 (355)
+-+++.++++...|+|.|++. .|+.-. .+.+.++..++ ....++++= .+. ....+.++|-.||++|++
T Consensus 261 V~~~~dA~~a~~~G~d~I~vs-nhGGr~~d~~~~t~~~L~ei~~~~-~~~~~vi~d-GGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 261 ILHPDDARRAVEAGVDGVVVS-NHGGRQVDGSIAALDALPEIVEAV-GDRLTVLFD-SGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred CCCHHHHHHHHHCCCCEEEEc-CCCCcCCCCCcCHHHHHHHHHHHh-cCCCeEEEe-CCcCcHHHHHHHHHcCCCEEEE
Confidence 478999999999999999999 676421 11111222221 112333321 111 356789999999999887
No 461
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=46.89 E-value=73 Score=30.85 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=19.1
Q ss_pred HHHHHHhcC-CCeEeec------CCCCHHHHHHHHHHc
Q 018508 149 WAKKALDLG-PQGVMFP------MIDSPEAAKEAVSYC 179 (355)
Q Consensus 149 ~i~~aLdaG-a~GImvP------~Vesaeea~~vv~a~ 179 (355)
.++..++.| ++||++- ..=|.||-+++++.+
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~ 63 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIA 63 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHH
Confidence 355667777 8887665 233566666666554
No 462
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=46.75 E-value=2.2e+02 Score=25.59 Aligned_cols=184 Identities=18% Similarity=0.192 Sum_probs=98.3
Q ss_pred hHHHHHHHcCCcEEEEEEec--CCHHHHHHhh-hc-CCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLS--FSPTLAEISG-LA-GYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTW 149 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~--~sp~~~e~aa-~~-G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~ 149 (355)
+.+++++ .+...+..-+.. ..+..++.+. .. |++.+. ....+++..+. ..| ..+.=.....+..
T Consensus 11 ~~~~~~~-~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~------va~~~Ea~~lr----~~g-~~il~l~~~~~~~ 78 (218)
T PF01168_consen 11 RKIRQRA-GPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFA------VATLEEAEELR----EAG-APILVLGPIPPEE 78 (218)
T ss_dssp HHHHHHH-CTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEE------ESSHHHHHHHH----HTT-SEEEEESESTGGG
T ss_pred HHHHHHc-CCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEE------EeeHHHhhhHH----hcC-CceEEEcCCChhh
Confidence 4566666 343434444444 5666666665 44 688766 35666666333 334 3333333366667
Q ss_pred HHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEcc--------
Q 018508 150 AKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVES-------- 221 (355)
Q Consensus 150 i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET-------- 221 (355)
+..+.+. =+.|.|+|.++++.+.+.++.. +....|.++|.|
T Consensus 79 ~~~~~~~----~~~~~v~s~~~~~~l~~~~~~~---------------------------~~~~~v~l~vdtG~~R~G~~ 127 (218)
T PF01168_consen 79 LEELVEY----NIIPTVDSLEQLEALSKAAKKQ---------------------------GKPLKVHLKVDTGMGRLGVR 127 (218)
T ss_dssp HHHHHHT----TEEEEE-SHHHHHHHHHHHHHH---------------------------TSTEEEEEEBESSSSSSSBE
T ss_pred HHHHhhC----cEEEEEchhhHHHHHHHHHHHc---------------------------CCceEEEEeecccccccCCC
Confidence 7777774 2677899999999988887521 112333443333
Q ss_pred -HHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCC-CHH-HHHHHHHHHHHHHhCCCce-eecccCCchhHHHHH-H
Q 018508 222 -EEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPG-HRK-VREMMRVAEKGVLGGGKAY-LAGFAMPHDAPLEMK-S 296 (355)
Q Consensus 222 -~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~-~p~-v~~ai~~iv~aa~a~g~~~-~g~~~~d~~~a~~~~-~ 296 (355)
-+..+-++.|.+.|++...-+.+. ++...+++ ... -.+.+.++....++.+..+ .-.++.++ ....+. .
T Consensus 128 ~~~~~~l~~~i~~~~~l~l~Gl~th-----~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~s~g~S~-~~~~~~~~ 201 (218)
T PF01168_consen 128 PEELEELAEAIKALPNLRLEGLMTH-----FAHADDPDYTNQEQFERFRELAEALEKAGIPPPIVSMGNSA-AFLLAPAH 201 (218)
T ss_dssp CHHHHHHHHHHHHTTTEEEEEEEEB-----GSSTTSSCHHHHHHHHHHHHHHHHHHHTTTTCSEEEEEBHH-HHHHHGGT
T ss_pred HHHHHHHHHHHhcCCCceEeeEecc-----ccccCCHHHHHHHHHHHHHHHHHHHHhccCCCceecCCCCc-chhhcccc
Confidence 345666777777787655444333 22222222 111 3345566666766666432 11222222 222333 6
Q ss_pred CCCCEEEecc
Q 018508 297 RGYHMVSGAV 306 (355)
Q Consensus 297 ~G~~~vs~~~ 306 (355)
.|++++-.|+
T Consensus 202 ~~~~~vR~G~ 211 (218)
T PF01168_consen 202 EGITMVRPGI 211 (218)
T ss_dssp TTTSEEEESG
T ss_pred cCCcEEEech
Confidence 7888888775
No 463
>PRK09581 pleD response regulator PleD; Reviewed
Probab=46.44 E-value=2.2e+02 Score=27.92 Aligned_cols=102 Identities=16% Similarity=0.075 Sum_probs=58.6
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVRV~~~~~~~i~~ 152 (355)
..++..|......+ ..........+.+....+|.|++|+.....+-.++...++.... ...++++-....+.....+
T Consensus 16 ~~l~~~l~~~~~~v--~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s~~~~~~~~~~ 93 (457)
T PRK09581 16 KLLEAKLLAEYYTV--LTASSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVTALDDPEDRVR 93 (457)
T ss_pred HHHHHHHHhCCCEE--EEeCCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCCHHHHHH
Confidence 34555664322222 22233445566677778999999998654444444444443111 2345566555566777888
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++..|+++++.--+ +.+++...++.
T Consensus 94 ~~~~ga~~~l~kp~-~~~~l~~~i~~ 118 (457)
T PRK09581 94 GLEAGADDFLTKPI-NDVALFARVKS 118 (457)
T ss_pred HHHCCCCEEEECCC-CHHHHHHHHHH
Confidence 99999998655433 45566544433
No 464
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.96 E-value=56 Score=29.24 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=40.2
Q ss_pred HHHHHHHHH-Hhcc--CCccEEEEChhhHHhhcCCCC--CCCCHHHHHHHHHHHHHHHhCCCcee
Q 018508 222 EEGVKRAED-IAAV--DGVDCVQMGPLDLSASMGYLW--DPGHRKVREMMRVAEKGVLGGGKAYL 281 (355)
Q Consensus 222 ~~av~niee-Iaav--pgVD~l~iGp~DLs~slG~~~--~~~~p~v~~ai~~iv~aa~a~g~~~~ 281 (355)
+..+.++++ +.+. |.+-.|++|.||+........ ...-.++...+++++..++++|.+++
T Consensus 59 ~~~l~r~~~~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vi 123 (204)
T cd01830 59 PSALARFDRDVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVI 123 (204)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 577888864 4443 556788889999965432111 11234678889999999998886643
No 465
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=45.81 E-value=1.5e+02 Score=29.01 Aligned_cols=74 Identities=15% Similarity=-0.008 Sum_probs=52.4
Q ss_pred EEEecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCC-CCCHHHHHHHHhcCCCeEeecCC
Q 018508 89 LFLLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLP-ESCPTWAKKALDLGPQGVMFPMI 166 (355)
Q Consensus 89 l~v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~-~~~~~~i~~aLdaGa~GImvP~V 166 (355)
+-|-..+.+.++.+..+|+|.|.+|- .+.+++++.+..+......+.+=+. +.+...+......|+|.|.+-..
T Consensus 192 IeVEv~tleqa~ea~~agaDiI~LDn----~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 192 IVVEADTPKEAIAALRAQPDVLQLDK----FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred EEEECCCHHHHHHHHHcCCCEEEECC----CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECcc
Confidence 56667899999999999999999984 4556666666544322222333333 34677889999999999977554
No 466
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=45.49 E-value=1e+02 Score=29.76 Aligned_cols=129 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHcCCcEEEEEEec-CCHHHHHHhhhcCCcEEEEe-------CCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHH
Q 018508 80 LQSNETLYGLFLLS-FSPTLAEISGLAGYDFVVVD-------MEHGPGGISDALACLHALAATGTPAILRLPESCPTWAK 151 (355)
Q Consensus 80 L~~G~~~~gl~v~~-~sp~~~e~aa~~G~D~vilD-------lEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~ 151 (355)
||.|+...+.+.+. ..-.+++.+..+|+|.|=+= . -...+.+.+...+..........++ .....+.
T Consensus 6 lRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~~~d~~~~~~~l~~~~~~~~~~~~----~~~~dv~ 80 (274)
T cd07938 6 PRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQMADAEEVLAGLPRRPGVRYSALV----PNLRGAE 80 (274)
T ss_pred CCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCHHHHHhhcccCCCCEEEEEC----CCHHHHH
Q ss_pred HHHhcCCCeEeecCCCCH---------------HHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEE
Q 018508 152 KALDLGPQGVMFPMIDSP---------------EAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIM 216 (355)
Q Consensus 152 ~aLdaGa~GImvP~Vesa---------------eea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi 216 (355)
++++.|++.|-++..-|. +.+...+++++ .....+.
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak-----------------------------~~G~~v~ 131 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAK-----------------------------AAGLRVR 131 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------------------------HCCCeEE
Q ss_pred EEEc-----------cHHHHHHHHHHhccCCccEEEE
Q 018508 217 CQVE-----------SEEGVKRAEDIAAVDGVDCVQM 242 (355)
Q Consensus 217 ~mIE-----------T~~av~nieeIaavpgVD~l~i 242 (355)
+.|+ +++-+.++-+.+.--|+|.|.+
T Consensus 132 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 132 GYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred EEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
No 467
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=45.49 E-value=71 Score=30.68 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=44.1
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCH------------HHHHHHHhcCCCeEee
Q 018508 96 PTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCP------------TWAKKALDLGPQGVMF 163 (355)
Q Consensus 96 p~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~------------~~i~~aLdaGa~GImv 163 (355)
...++.+...|||.|=|.----....++-..+|+.+...|..++-=|..-++ ..+++.|++||+-||+
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 166 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVII 166 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4567888899999876654433456667777888877777666655554433 2367889999999998
No 468
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=45.47 E-value=58 Score=27.78 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHhc--cCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce
Q 018508 221 SEEGVKRAEDIAA--VDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY 280 (355)
Q Consensus 221 T~~av~nieeIaa--vpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~ 280 (355)
|..++.++++.++ -|.+-.|++|.||+... .....+...++++++.+++++.++
T Consensus 49 ~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~------~~~~~~~~~l~~li~~~~~~~~~v 104 (177)
T cd01822 49 TAGGLARLPALLAQHKPDLVILELGGNDGLRG------IPPDQTRANLRQMIETAQARGAPV 104 (177)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeccCcccccC------CCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3456777876664 35677888899997432 223467788889999998876653
No 469
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=45.28 E-value=3.1e+02 Score=26.90 Aligned_cols=182 Identities=14% Similarity=0.029 Sum_probs=98.6
Q ss_pred hHHHHHHHcCCcEEEEE-EecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHh-CCCCeEEc--C-CCCCHH
Q 018508 74 ESLKYRLQSNETLYGLF-LLSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAA-TGTPAILR--L-PESCPT 148 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~-v~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~-~g~~~iVR--V-~~~~~~ 148 (355)
++|.+.|.-.-|++.-= ....+|+++..+..+|.=. +|.+.. ...++++..|+.++. .+.+.-|- + ......
T Consensus 2 t~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG-~l~~~~--~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~ 78 (307)
T TIGR03151 2 TRLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLG-IIGAGN--APPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDE 78 (307)
T ss_pred ChhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcc-eecccc--CCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHH
Confidence 45666665555655311 1257888888887777422 333322 245777777776653 33332222 1 222234
Q ss_pred HHHHHHhcCCCeEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHH
Q 018508 149 WAKKALDLGPQGVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRA 228 (355)
Q Consensus 149 ~i~~aLdaGa~GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~ni 228 (355)
.+..+++.|+..|.+-.- .+. .+++.++. ..+.++++|=|.+-...+
T Consensus 79 ~~~~~~~~~v~~v~~~~g-~p~---~~i~~lk~-----------------------------~g~~v~~~v~s~~~a~~a 125 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGAG-NPG---KYIPRLKE-----------------------------NGVKVIPVVASVALAKRM 125 (307)
T ss_pred HHHHHHhCCCCEEEEcCC-CcH---HHHHHHHH-----------------------------cCCEEEEEcCCHHHHHHH
Confidence 456678888887776332 232 23443331 124677888776554444
Q ss_pred HHHhccCCccEEEE-ChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce--eecccCCchhHHHHHHCCCCEEEec
Q 018508 229 EDIAAVDGVDCVQM-GPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY--LAGFAMPHDAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 229 eeIaavpgVD~l~i-Gp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~--~g~~~~d~~~a~~~~~~G~~~vs~~ 305 (355)
++ -|+|+|.+ |. +- =|+.+.. + ....+.++.+.. ++++ .|++ .+++.+..++.+|.+++.+|
T Consensus 126 ~~----~GaD~Ivv~g~-ea---gGh~g~~--~-~~~ll~~v~~~~---~iPviaaGGI-~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 126 EK----AGADAVIAEGM-ES---GGHIGEL--T-TMALVPQVVDAV---SIPVIAAGGI-ADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HH----cCCCEEEEECc-cc---CCCCCCC--c-HHHHHHHHHHHh---CCCEEEECCC-CCHHHHHHHHHcCCCEeecc
Confidence 43 28999987 44 11 1222221 1 234444444332 3442 3334 35676777788999999999
Q ss_pred c
Q 018508 306 V 306 (355)
Q Consensus 306 ~ 306 (355)
+
T Consensus 191 t 191 (307)
T TIGR03151 191 T 191 (307)
T ss_pred h
Confidence 8
No 470
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=45.26 E-value=41 Score=37.69 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=71.4
Q ss_pred eEeecCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHHHHHHHHHHhc----cC
Q 018508 160 GVMFPMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEEGVKRAEDIAA----VD 235 (355)
Q Consensus 160 GImvP~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~av~nieeIaa----vp 235 (355)
.-++.|++|+.|+-++.=.+|.. |.. . .+...+.|++..||.+-++|.+.|.. +|
T Consensus 488 ~yIISma~s~SDvLev~lLlKE~--Gl~-------~------------~~~~~v~VvPLFETieDL~na~~vm~~ll~l~ 546 (910)
T COG2352 488 AYIISMAESVSDVLEVLLLLKEA--GLV-------D------------PERARVPVVPLFETIEDLDNAPDVMTQLLNLP 546 (910)
T ss_pred hhhhhccCCHHHHHHHHHHHHHh--CCC-------C------------ccCCccccccccccHHHHhccHHHHHHHHcCh
Confidence 46899999999999888877742 211 0 02346889999999999999999973 34
Q ss_pred C----------ccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc
Q 018508 236 G----------VDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKA 279 (355)
Q Consensus 236 g----------VD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~ 279 (355)
. +-.||+|-.|=.-+=|+. ...-++..+...+++.|+++|+.
T Consensus 547 ~yR~~l~~~~n~QEVMlGYSDSnKDgG~l--aa~Wa~y~Aq~aLv~~~~~~gV~ 598 (910)
T COG2352 547 LYRALLAGRGNVQEVMLGYSDSNKDGGYL--AANWALYKAQLALVELCEKAGVE 598 (910)
T ss_pred HHHHHHcCCCCceEEEecccccccccchh--hhHHHHHHHHHHHHHHHHHhCce
Confidence 2 556788877766665553 22456778888999999998866
No 471
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=45.09 E-value=3.3e+02 Score=27.23 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=65.4
Q ss_pred chHHHHHHHcCCcEEEEEEecCCHHH----HHHhhhcCCcEEEEeCCCCC---CC---HHHHHHHHHH-HHhC--CCCeE
Q 018508 73 PESLKYRLQSNETLYGLFLLSFSPTL----AEISGLAGYDFVVVDMEHGP---GG---ISDALACLHA-LAAT--GTPAI 139 (355)
Q Consensus 73 ~n~lk~~L~~G~~~~gl~v~~~sp~~----~e~aa~~G~D~vilDlEh~~---~~---~~~a~~~i~a-~~~~--g~~~i 139 (355)
...+-++-++++..++.| +..+.+. ++.+...+.. |||.+-.+. .. ...+..++.. ++.. ..|+.
T Consensus 12 ~k~lL~~A~~~~yAV~Af-N~~n~e~~~avi~AAee~~sP-vIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~ 89 (321)
T PRK07084 12 TREMFAKAVKGGYAIPAY-NFNNMEQLQAIIQACVETKSP-VILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIV 89 (321)
T ss_pred HHHHHHHHHHCCceEEEE-EeCCHHHHHHHHHHHHHhCCC-EEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEE
Confidence 344445555677788877 4445543 3455556666 444443321 12 1222222222 3333 56777
Q ss_pred EcCCCC-CHHHHHHHHhcCCCeEee-----cCCCCHHHHHHHHHHcC
Q 018508 140 LRLPES-CPTWAKKALDLGPQGVMF-----PMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 140 VRV~~~-~~~~i~~aLdaGa~GImv-----P~Vesaeea~~vv~a~~ 180 (355)
+=.... +...+.+++++|...||+ |.=++.+.-+++++.++
T Consensus 90 lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah 136 (321)
T PRK07084 90 LHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAH 136 (321)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHH
Confidence 777555 467899999999998886 88888888899999887
No 472
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=45.08 E-value=1.3e+02 Score=28.06 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred EEEEEEccHHHHHH-----HHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCceeecccCCc
Q 018508 214 LIMCQVESEEGVKR-----AEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAYLAGFAMPH 288 (355)
Q Consensus 214 ~vi~mIET~~av~n-----ieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~~g~~~~d~ 288 (355)
.+-+.+||.. +.+ +-+|+.--|.|+|=-.+ |.......++-...+.+++.. .-+++..||+. +.
T Consensus 119 ~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsT-------Gf~~~gat~~dv~~m~~~v~~--~v~IKaaGGir-t~ 187 (211)
T TIGR00126 119 LLKVIIETGL-LTDEEIRKACEICIDAGADFVKTST-------GFGAGGATVEDVRLMRNTVGD--TIGVKASGGVR-TA 187 (211)
T ss_pred eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCC-------CCCCCCCCHHHHHHHHHHhcc--CCeEEEeCCCC-CH
Confidence 4555788875 433 33333234778775433 222122233333444444432 34666778876 77
Q ss_pred hhHHHHHHCCCCEEEec
Q 018508 289 DAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 289 ~~a~~~~~~G~~~vs~~ 305 (355)
+++..+++.|.+.+-.+
T Consensus 188 ~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 188 EDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHHHHhhHHhCcc
Confidence 88889999998876443
No 473
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=45.03 E-value=2.2e+02 Score=25.14 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=52.4
Q ss_pred hHHHHHHHcCCcEEEEEEecC-CHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHH
Q 018508 74 ESLKYRLQSNETLYGLFLLSF-SPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKK 152 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~-sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~ 152 (355)
+.+|+++.+ +..+..-+..+ ++..++.+...+.-+-+ .+.+++.....+. ......++--+..++..+..
T Consensus 6 ~~i~~~~~~-~~~i~~~vKan~~~~i~~~~~~~~~~~~v-------~s~~E~~~~~~~g-~~~~~I~~~~~~~~~~~l~~ 76 (211)
T cd06808 6 RRLREAAPA-GITLFAVVKANANPEVARTLAALGTGFDV-------ASLGEALLLRAAG-IPPEPILFLGPCKQVSELED 76 (211)
T ss_pred HHHHHhCCC-CCEEEEEEecCCCHHHHHHHHHcCCcEEE-------cCHHHHHHHHHcC-CCHHHEEEcCCCCCHHHHHH
Confidence 456666644 22333333443 57777777665433222 3445554433210 11122334333445778888
Q ss_pred HHhcCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 153 ALDLGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 153 aLdaGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
+++.| ...+.|+|.++++.+.+.++
T Consensus 77 ~~~~~---~~~~~ids~~~l~~l~~~~~ 101 (211)
T cd06808 77 AAEQG---VIVVTVDSLEELEKLEEAAL 101 (211)
T ss_pred HHHcC---CCEEEeCCHHHHHHHHHHHH
Confidence 88873 35567899999998887764
No 474
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=44.94 E-value=2.3e+02 Score=29.66 Aligned_cols=105 Identities=12% Similarity=-0.102 Sum_probs=68.2
Q ss_pred CCCCCchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeC-CCCC--CCHHHHHHHHHHHHhCCCCeEEcCCC
Q 018508 68 SPSPSPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDM-EHGP--GGISDALACLHALAATGTPAILRLPE 144 (355)
Q Consensus 68 ~~~~~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDl-Eh~~--~~~~~a~~~i~a~~~~g~~~iVRV~~ 144 (355)
++.+.|...-..|..++..+ +.+.+++.++.+..+|+|++=|-+ +.+| .+.++++.+...+. -..+.|=+|.
T Consensus 242 m~~~d~~~~~~~L~~~~vKI---CGit~~eda~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~--v~~VgVfv~~ 316 (454)
T PRK09427 242 MAEDDLELAVRKLILGENKV---CGLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP--LRYVGVFRNA 316 (454)
T ss_pred cCCCCHHHHHHHHhcccccc---CCCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC--CCEEEEEeCC
Confidence 44455544333444443322 356799999999999999976655 4565 56788888877643 2223343443
Q ss_pred CCHHHHHHH-HhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 145 SCPTWAKKA-LDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 145 ~~~~~i~~a-LdaGa~GImvP~Vesaeea~~vv~a 178 (355)
++..+.++ -..+.+.|.+=-.++++.++.+.+.
T Consensus 317 -~~~~i~~i~~~~~lD~vQLHG~e~~~~~~~l~~~ 350 (454)
T PRK09427 317 -DIEDIVDIAKQLSLAAVQLHGDEDQAYIDALREA 350 (454)
T ss_pred -CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhh
Confidence 45666554 4678899999888898888776654
No 475
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.82 E-value=1.3e+02 Score=29.42 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=46.5
Q ss_pred HHHHHhhhcCCcEEEEeCCCC---CCCHHHHHHHHHHHH---hCCCCeEEcCCCCCHH----HHHHHHhcCCCeEee
Q 018508 97 TLAEISGLAGYDFVVVDMEHG---PGGISDALACLHALA---ATGTPAILRLPESCPT----WAKKALDLGPQGVMF 163 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~---~~~~~~a~~~i~a~~---~~g~~~iVRV~~~~~~----~i~~aLdaGa~GImv 163 (355)
+.++.+...|.|.|++-.--| ..+.++-+++++.+. ....+++|=+...+.. .++.+.++|+++||+
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 345677778999988865544 356666666665432 3457889888877664 356788899999765
No 476
>PRK15447 putative protease; Provisional
Probab=44.79 E-value=3.1e+02 Score=26.75 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHhcCCCeEeecCC-------CCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEE-EEEE-c
Q 018508 150 AKKALDLGPQGVMFPMI-------DSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLI-MCQV-E 220 (355)
Q Consensus 150 i~~aLdaGa~GImvP~V-------esaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~v-i~mI-E 220 (355)
+.++.+.|||.|-+... =+.++++++++.++.. | .++-+ ...| .
T Consensus 21 ~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~--g-------------------------kkvyva~p~i~~ 73 (301)
T PRK15447 21 YQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAA--G-------------------------KEVVLSTLALVE 73 (301)
T ss_pred HHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHc--C-------------------------CEEEEEeccccc
Confidence 44555779999999743 2668888888887631 1 12222 2233 4
Q ss_pred cHHHHHHHHHHhccCCccEEEEC
Q 018508 221 SEEGVKRAEDIAAVDGVDCVQMG 243 (355)
Q Consensus 221 T~~av~nieeIaavpgVD~l~iG 243 (355)
...=+..+.+++.. ++|+|.++
T Consensus 74 ~~~e~~~l~~~l~~-~~~~v~v~ 95 (301)
T PRK15447 74 APSELKELRRLVEN-GEFLVEAN 95 (301)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEe
Confidence 56666777887764 57777753
No 477
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.78 E-value=2.1e+02 Score=29.65 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=46.7
Q ss_pred CHHHHHHhhhcC-CcEEEEeCCCCCC-CHH---HHHHHHHHHH-----hCCCCeEEcC---CCC-CHHHHHHHHhcCCCe
Q 018508 95 SPTLAEISGLAG-YDFVVVDMEHGPG-GIS---DALACLHALA-----ATGTPAILRL---PES-CPTWAKKALDLGPQG 160 (355)
Q Consensus 95 sp~~~e~aa~~G-~D~vilDlEh~~~-~~~---~a~~~i~a~~-----~~g~~~iVRV---~~~-~~~~i~~aLdaGa~G 160 (355)
+++.++.+...| +|.|++..|-+.. +.. .+...+..+. ..+-..=||| .+. ++..+..++.+||++
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~ 244 (418)
T cd04742 165 TEEQAELARRVPVADDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADF 244 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcE
Confidence 777888888888 6999999876643 111 1111222111 1111111222 222 577899999999999
Q ss_pred Eee-------cCCCCHHHHHHHHH
Q 018508 161 VMF-------PMIDSPEAAKEAVS 177 (355)
Q Consensus 161 Imv-------P~Vesaeea~~vv~ 177 (355)
|++ +-..+.+..++.+.
T Consensus 245 V~~GT~flat~Ea~~s~~~K~~L~ 268 (418)
T cd04742 245 IVTGSINQCTVEAGTSDAVKDLLQ 268 (418)
T ss_pred EeeccHHHhCccccCCHHHHHHHH
Confidence 876 33334445555553
No 478
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=44.45 E-value=2.6e+02 Score=25.73 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCC-CCHHHHHHHHhcCCCeEeecCCCCHHHH
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPE-SCPTWAKKALDLGPQGVMFPMIDSPEAA 172 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~-~~~~~i~~aLdaGa~GImvP~Vesaeea 172 (355)
+....++.+....+|.|++|+.-...+--.+...++.......++++-+.. .+......+++.|+++++.--+ +.+++
T Consensus 36 ~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~-~~~~L 114 (262)
T TIGR02875 36 NGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPF-DLEIL 114 (262)
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCC-CHHHH
Confidence 445566777778899999998865444444444444322222244444433 3455677899999998665333 44555
Q ss_pred HHHHHH
Q 018508 173 KEAVSY 178 (355)
Q Consensus 173 ~~vv~a 178 (355)
...++.
T Consensus 115 ~~~i~~ 120 (262)
T TIGR02875 115 AARIRQ 120 (262)
T ss_pred HHHHHH
Confidence 544443
No 479
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.44 E-value=2.9e+02 Score=27.47 Aligned_cols=67 Identities=25% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHHhhhcCCcEEEEeCCCC--------C-CCH---------H----HHHHHHHHHHh-CC--CCeEEcCCCCC-----
Q 018508 97 TLAEISGLAGYDFVVVDMEHG--------P-GGI---------S----DALACLHALAA-TG--TPAILRLPESC----- 146 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~--------~-~~~---------~----~a~~~i~a~~~-~g--~~~iVRV~~~~----- 146 (355)
..++.+..+|||.|=|-+-|+ | .++ + -+.+++.+++. .| .++.||++..+
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G 224 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG 224 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence 346677789999999999886 2 111 1 12345556553 33 45789998643
Q ss_pred --HH---H-HHHHHhcC-CCeEee
Q 018508 147 --PT---W-AKKALDLG-PQGVMF 163 (355)
Q Consensus 147 --~~---~-i~~aLdaG-a~GImv 163 (355)
.. . ++.+.++| ++.|-|
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEe
Confidence 22 1 24444567 777766
No 480
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=44.19 E-value=2.6e+02 Score=25.77 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=57.2
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC-CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHH
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP-GGISDALACLHALAATGTPAILRLPESCPTWA 150 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~-~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i 150 (355)
+..-|+..|..+-.+.+...+. .+.++.+ . ..|.|++|+.-.. ...+..+..++.. ..+..++|= ...+. ..
T Consensus 22 ~~~~l~~~L~~~~~v~~~~~~~--~~~~~~~-~-~~DvvllDi~~p~~~G~~~~~~~i~~~-~p~~~vvvl-t~~~~-~~ 94 (216)
T PRK10100 22 QATALLQHLKQSLAITGKLHNI--QRSLDDI-S-SGSIILLDMMEADKKLIHYWQDTLSRK-NNNIKILLL-NTPED-YP 94 (216)
T ss_pred hhHHHHHHHHHhCCCeEEEcCH--HHhhccC-C-CCCEEEEECCCCCccHHHHHHHHHHHh-CCCCcEEEE-ECCch-hH
Confidence 3456888887666666655422 2333332 2 3899999998642 2232223334321 223334433 33332 33
Q ss_pred HHHHh--cCCCeEeecCCCCHHHHHHHHHHcC
Q 018508 151 KKALD--LGPQGVMFPMIDSPEAAKEAVSYCR 180 (355)
Q Consensus 151 ~~aLd--aGa~GImvP~Vesaeea~~vv~a~~ 180 (355)
..++. +|+.|+ ++|-.+++++.++++.+.
T Consensus 95 ~~~~~~~~Ga~G~-l~K~~~~~~L~~aI~~v~ 125 (216)
T PRK10100 95 YREIENWPHINGV-FYAMEDQERVVNGLQGVL 125 (216)
T ss_pred HHHHHHhcCCeEE-EECCCCHHHHHHHHHHHH
Confidence 34444 599998 566788999988887764
No 481
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=44.18 E-value=1.2e+02 Score=30.36 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=45.0
Q ss_pred HHHHhhhcCCcEEEEeCCCC-----C---CCHHHHHHHHHHHHh-CCCCeEEcCCC--CCHHHHHHHHhcCCCeEeec
Q 018508 98 LAEISGLAGYDFVVVDMEHG-----P---GGISDALACLHALAA-TGTPAILRLPE--SCPTWAKKALDLGPQGVMFP 164 (355)
Q Consensus 98 ~~e~aa~~G~D~vilDlEh~-----~---~~~~~a~~~i~a~~~-~g~~~iVRV~~--~~~~~i~~aLdaGa~GImvP 164 (355)
..+.+...++|++-|.+... + .+.....+.++.+.. .+.|++|+..+ .....++.+.++|+++|.+-
T Consensus 140 ~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 140 AQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 33445567899998887331 1 234444466666543 47899999764 34567788899999999983
No 482
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=44.17 E-value=1.8e+02 Score=30.32 Aligned_cols=72 Identities=7% Similarity=-0.028 Sum_probs=49.4
Q ss_pred EecCCHHHHHHhhhcCCcEEEEeCCC---------CCCCHHHHHHHHHHHHh-----CCCCeEEcCCCCCHHHHHHHHhc
Q 018508 91 LLSFSPTLAEISGLAGYDFVVVDMEH---------GPGGISDALACLHALAA-----TGTPAILRLPESCPTWAKKALDL 156 (355)
Q Consensus 91 v~~~sp~~~e~aa~~G~D~vilDlEh---------~~~~~~~a~~~i~a~~~-----~g~~~iVRV~~~~~~~i~~aLda 156 (355)
+...+.+.+..+...|+|||.+--=. .|.+.+.++...+.+.. ....|+|=|.+.+...+..+++.
T Consensus 305 vStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~a 384 (437)
T PRK12290 305 LSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQC 384 (437)
T ss_pred EecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHc
Confidence 34567777888888999999884211 23445555444433321 11357888999999999999999
Q ss_pred CCCeEe
Q 018508 157 GPQGVM 162 (355)
Q Consensus 157 Ga~GIm 162 (355)
|++||-
T Consensus 385 Ga~GVA 390 (437)
T PRK12290 385 GVSSLA 390 (437)
T ss_pred CCCEEE
Confidence 999864
No 483
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.16 E-value=3.1e+02 Score=26.63 Aligned_cols=49 Identities=20% Similarity=0.113 Sum_probs=34.2
Q ss_pred CCHHHHHHhhhcCCcEEEEeCCCCCCC--HHHHHHHHHHHHhCCCCeEEcC
Q 018508 94 FSPTLAEISGLAGYDFVVVDMEHGPGG--ISDALACLHALAATGTPAILRL 142 (355)
Q Consensus 94 ~sp~~~e~aa~~G~D~vilDlEh~~~~--~~~a~~~i~a~~~~g~~~iVRV 142 (355)
.+.+.++.+...||+.|.||.-|-+.+ .+..++++.-+...|..+-..+
T Consensus 85 ~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~El 135 (282)
T TIGR01859 85 SSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAEL 135 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 378899999999999999999998753 3334445555555565443333
No 484
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=44.16 E-value=2.8e+02 Score=27.56 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=40.3
Q ss_pred HHHHHhhhcCCcEEEEeCCCC--------CC----------CHH-HH---HHHHHHHHh-CCCCeEEcCCCCC-------
Q 018508 97 TLAEISGLAGYDFVVVDMEHG--------PG----------GIS-DA---LACLHALAA-TGTPAILRLPESC------- 146 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~--------~~----------~~~-~a---~~~i~a~~~-~g~~~iVRV~~~~------- 146 (355)
..++.+..+|||.|-|-+-|+ |. +.+ .+ .+++.+++. .+.++.||++..+
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~ 225 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLT 225 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCC
Confidence 345677789999999999994 31 111 12 234555543 3567889998632
Q ss_pred HH---H-HHHHHhcCCCeEee
Q 018508 147 PT---W-AKKALDLGPQGVMF 163 (355)
Q Consensus 147 ~~---~-i~~aLdaGa~GImv 163 (355)
.. . ++.+-+.|++.|-|
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~v 246 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDV 246 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEe
Confidence 22 1 23444567776655
No 485
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=43.80 E-value=1.4e+02 Score=29.48 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCccEEEEChhhHHhhcCCCCCCC--CHHHHHHHHHHHHHHHhC-CCceeecccCCc-hhHHHHHHCCCC
Q 018508 225 VKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPG--HRKVREMMRVAEKGVLGG-GKAYLAGFAMPH-DAPLEMKSRGYH 300 (355)
Q Consensus 225 v~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~--~p~v~~ai~~iv~aa~a~-g~~~~g~~~~d~-~~a~~~~~~G~~ 300 (355)
++.++..++..|+|+|++. -|++...|..-.+. ..-+....++++..++++ +++++.-.+++. .....+.+.|++
T Consensus 158 i~y~~~qiea~Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g~d 236 (321)
T cd03309 158 LKLYERRIKHLEPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVD 236 (321)
T ss_pred HHHHHHHHHHhCCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCC
Confidence 3344433432289999884 22322212111111 111234457888888877 443333345544 457778889999
Q ss_pred EEEecc
Q 018508 301 MVSGAV 306 (355)
Q Consensus 301 ~vs~~~ 306 (355)
.+++..
T Consensus 237 vl~~d~ 242 (321)
T cd03309 237 SWNVVM 242 (321)
T ss_pred EEEecC
Confidence 887643
No 486
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=43.71 E-value=1.4e+02 Score=28.02 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHHcCCcEEEEEEecCCHH-HHHHhhh-cCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHH
Q 018508 77 KYRLQSNETLYGLFLLSFSPT-LAEISGL-AGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKAL 154 (355)
Q Consensus 77 k~~L~~G~~~~gl~v~~~sp~-~~e~aa~-~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aL 154 (355)
+..+..|=+.+-+-.+.+.+. .++.++. .+ +.++ -.- ...+.+++++.+. .|..-+| -|..+++.++.+.
T Consensus 32 ~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lI-GAG-TVL~~~q~~~a~~----aGa~fiV-sP~~~~ev~~~a~ 103 (211)
T COG0800 32 KALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALI-GAG-TVLNPEQARQAIA----AGAQFIV-SPGLNPEVAKAAN 103 (211)
T ss_pred HHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEE-ccc-cccCHHHHHHHHH----cCCCEEE-CCCCCHHHHHHHH
Confidence 344455556666555554443 2222222 22 3332 100 0234455444433 2433333 3556666677766
Q ss_pred hcCCCeEeecCCCCHHHHHHHHH
Q 018508 155 DLGPQGVMFPMIDSPEAAKEAVS 177 (355)
Q Consensus 155 daGa~GImvP~Vesaeea~~vv~ 177 (355)
+.|. ..+|-|-|+-|+..+.+
T Consensus 104 ~~~i--p~~PG~~TptEi~~Ale 124 (211)
T COG0800 104 RYGI--PYIPGVATPTEIMAALE 124 (211)
T ss_pred hCCC--cccCCCCCHHHHHHHHH
Confidence 6654 46677777777766554
No 487
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=43.66 E-value=45 Score=32.49 Aligned_cols=228 Identities=18% Similarity=0.216 Sum_probs=109.1
Q ss_pred hHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCC-------CC------CC-C-HHHHHHHHHHHH--hCCC
Q 018508 74 ESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDME-------HG------PG-G-ISDALACLHALA--ATGT 136 (355)
Q Consensus 74 n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlE-------h~------~~-~-~~~a~~~i~a~~--~~g~ 136 (355)
.+||+++++|+|++|.- ..+.-.++.+...|+|+|++=-. ++ |+ + -+...++.+.+. ...+
T Consensus 5 ~~l~~~i~~~~pIig~g--aGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~t 82 (268)
T PF09370_consen 5 DRLRAQIKAGKPIIGAG--AGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDT 82 (268)
T ss_dssp HHHHHHHHTT--EEEEE--ESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS
T ss_pred HHHHHHHhCCCceEEEe--eccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCC
Confidence 57999999999999966 45666677778889999885211 11 10 0 011112222221 2346
Q ss_pred CeEEcCCCCCHH-----HHHHHHhcCCCeEe-ecCCCCHHH-HHHHHHHcCCCCCCCCCCcccccccccCCCCccccccC
Q 018508 137 PAILRLPESCPT-----WAKKALDLGPQGVM-FPMIDSPEA-AKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNY 209 (355)
Q Consensus 137 ~~iVRV~~~~~~-----~i~~aLdaGa~GIm-vP~Vesaee-a~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~ 209 (355)
|++.=|+..||. .+.++.+.|..||. +|-|.-.+- .++..+.. |.| |...-+++..+
T Consensus 83 PViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~--------Gmg--------y~~EVemi~~A 146 (268)
T PF09370_consen 83 PVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEET--------GMG--------YDREVEMIRKA 146 (268)
T ss_dssp -EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHT--------T----------HHHHHHHHHHH
T ss_pred CEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhc--------CCC--------HHHHHHHHHHH
Confidence 778788887763 47888899999976 898754442 23332221 111 11001122111
Q ss_pred -CCceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHH--hhcCCCCCCCCHHHHHHHHHHHHHHHhCCCc----eee
Q 018508 210 -EEELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLS--ASMGYLWDPGHRKVREMMRVAEKGVLGGGKA----YLA 282 (355)
Q Consensus 210 -n~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs--~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~----~~g 282 (355)
...+..++-+=++ +.+.++++. |+|.|.+-.+ |+ -++|......-.+-.+.++++.++|++-+.. +-|
T Consensus 147 ~~~gl~T~~yvf~~---e~A~~M~~A-GaDiiv~H~G-lT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hG 221 (268)
T PF09370_consen 147 HEKGLFTTAYVFNE---EQARAMAEA-GADIIVAHMG-LTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHG 221 (268)
T ss_dssp HHTT-EE--EE-SH---HHHHHHHHH-T-SEEEEE-S-S----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEEC
T ss_pred HHCCCeeeeeecCH---HHHHHHHHc-CCCEEEecCC-ccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 1223444444333 233444432 7787665221 11 1222221122233445567788888775543 234
Q ss_pred cccCCchhHHHHHH--CCCCEEEecc--hHHHHHHHHHHHHHHHHH
Q 018508 283 GFAMPHDAPLEMKS--RGYHMVSGAV--DVGLFRSAAVEDVARFKM 324 (355)
Q Consensus 283 ~~~~d~~~a~~~~~--~G~~~vs~~~--D~~ll~~~~~~~~~~~r~ 324 (355)
+.-.+|++++..++ .|..++.-++ +..-.-++.++.+..||.
T Consensus 222 GPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ERlP~E~ai~~~~~~FK~ 267 (268)
T PF09370_consen 222 GPIATPEDAQYVLRNTKGIHGFIGASSMERLPVERAITETVRAFKS 267 (268)
T ss_dssp TTB-SHHHHHHHHHH-TTEEEEEESTTTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhcCCCCCEEecccchhhccHHHHHHHHHHHhhc
Confidence 55567788876654 3456665544 556678888888888875
No 488
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=43.65 E-value=1.9e+02 Score=26.92 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=39.6
Q ss_pred CHHHHHHhhhcCCcEEEEeCCCCCCC---------HHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC
Q 018508 95 SPTLAEISGLAGYDFVVVDMEHGPGG---------ISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPM 165 (355)
Q Consensus 95 sp~~~e~aa~~G~D~vilDlEh~~~~---------~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~ 165 (355)
.++.++.+.. -.|.+.+|+-|...+ .+...+.++.+...+....|| .++||-
T Consensus 79 ~~~~~~~l~~-~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR------------------~~vIPg 139 (213)
T PRK10076 79 PASKLLPLAK-LCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR------------------LPLIPG 139 (213)
T ss_pred CHHHHHHHHH-hcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE------------------EEEECC
Confidence 3455555544 489999999986311 112222333333344444444 357888
Q ss_pred C-CCHHHHHHHHHHcC
Q 018508 166 I-DSPEAAKEAVSYCR 180 (355)
Q Consensus 166 V-esaeea~~vv~a~~ 180 (355)
+ .+.|+++++.+.++
T Consensus 140 ~nd~~e~i~~ia~~l~ 155 (213)
T PRK10076 140 FTLSRENMQQALDVLI 155 (213)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7 47888888888775
No 489
>PRK15108 biotin synthase; Provisional
Probab=43.43 E-value=3.5e+02 Score=26.97 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=108.8
Q ss_pred hhcCCcEEEEeC--CCC-CCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEee---------cCC---C
Q 018508 103 GLAGYDFVVVDM--EHG-PGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMF---------PMI---D 167 (355)
Q Consensus 103 a~~G~D~vilDl--Eh~-~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImv---------P~V---e 167 (355)
...|+.-+.+=. ++- ..+.+...++++.++..+..+++=....+...++++.++|++++-+ +++ +
T Consensus 89 ~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~ 168 (345)
T PRK15108 89 KAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTR 168 (345)
T ss_pred HHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCC
Confidence 356776665532 221 2245667777777765555544433445667788888999986655 444 3
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEEEccHH-HHHHHHHHhccC-CccEEEEChh
Q 018508 168 SPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQVESEE-GVKRAEDIAAVD-GVDCVQMGPL 245 (355)
Q Consensus 168 saeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~mIET~~-av~nieeIaavp-gVD~l~iGp~ 245 (355)
+.++..+.++.++.. |.+ -....++-+.||.+ -++.+..+...+ .++.|.+...
T Consensus 169 ~~~~rl~~i~~a~~~--G~~----------------------v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~ 224 (345)
T PRK15108 169 TYQERLDTLEKVRDA--GIK----------------------VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINML 224 (345)
T ss_pred CHHHHHHHHHHHHHc--CCc----------------------eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCc
Confidence 444444444443321 110 11124556799985 444444455543 3566555433
Q ss_pred hHHhhcCCCCCCCCH-HHHHHHHHHHHHHHh---C-CCceeecc-cCCchhHHHHHHCCCCEEEecchH-HHHHHHHHHH
Q 018508 246 DLSASMGYLWDPGHR-KVREMMRVAEKGVLG---G-GKAYLAGF-AMPHDAPLEMKSRGYHMVSGAVDV-GLFRSAAVED 318 (355)
Q Consensus 246 DLs~slG~~~~~~~p-~v~~ai~~iv~aa~a---~-g~~~~g~~-~~d~~~a~~~~~~G~~~vs~~~D~-~ll~~~~~~~ 318 (355)
.--=|.+.....+ ...+. -++++.+|= . .+.+.++. ....+.....+..|.+.+.++.=+ +--.....+.
T Consensus 225 --~P~~gTpl~~~~~~~~~e~-lr~iAi~Rl~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~ 301 (345)
T PRK15108 225 --VKVKGTPLADNDDVDAFDF-IRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKD 301 (345)
T ss_pred --cCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHH
Confidence 0000211111111 11122 223333332 1 23334443 223455677889999998666422 2224556677
Q ss_pred HHHHHHhcCCCCCCC----CCCchhHHhhhhcc-ccccccC
Q 018508 319 VARFKMNLTDDADDD----DDDDDDAWRERIKD-ADDKYWS 354 (355)
Q Consensus 319 ~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~ 354 (355)
++-++.....-..-| +.+-..+-...|-. +.+.||+
T Consensus 302 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (345)
T PRK15108 302 LQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDQYYN 342 (345)
T ss_pred HHHHHHcCCCcccccccccchhhHHHHHhhhhcccchhhcc
Confidence 777777533332211 11222233333444 5566887
No 490
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=43.22 E-value=2.8e+02 Score=25.92 Aligned_cols=86 Identities=17% Similarity=0.090 Sum_probs=53.8
Q ss_pred cCCHH-HHHHhhhcCCcE-EEEeCCCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecC--CC
Q 018508 93 SFSPT-LAEISGLAGYDF-VVVDMEHGPGGISDALACLHALA-ATGTPAILRLPESCPTWAKKALDLGPQGVMFPM--ID 167 (355)
Q Consensus 93 ~~sp~-~~e~aa~~G~D~-vilDlEh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~--Ve 167 (355)
..+|. .++.....|+|+ .++|+.-.. ....-.+.++.+. ..+.++.|==.=.+.+.+++++++|++.+++-- .+
T Consensus 31 ~~dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 31 YGSPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 34665 667777899986 788997432 2222224444432 234454432122246789999999999887654 37
Q ss_pred CHHHHHHHHHHc
Q 018508 168 SPEAAKEAVSYC 179 (355)
Q Consensus 168 saeea~~vv~a~ 179 (355)
+++-++++++.+
T Consensus 110 ~p~l~~~i~~~~ 121 (241)
T PRK14024 110 NPEWCARVIAEH 121 (241)
T ss_pred CHHHHHHHHHHh
Confidence 778888887754
No 491
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=43.21 E-value=3e+02 Score=26.27 Aligned_cols=190 Identities=14% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHcCCcEEEEEEec-CCHHHHHHhhhcCCcEEEEeC-CCCCCCHHHHHHHHHHHH-hCCCCeEEcCCCCCHH-----HHH
Q 018508 80 LQSNETLYGLFLLS-FSPTLAEISGLAGYDFVVVDM-EHGPGGISDALACLHALA-ATGTPAILRLPESCPT-----WAK 151 (355)
Q Consensus 80 L~~G~~~~gl~v~~-~sp~~~e~aa~~G~D~vilDl-Eh~~~~~~~a~~~i~a~~-~~g~~~iVRV~~~~~~-----~i~ 151 (355)
||.|....+.+.+. ..-.+++.+..+|+|.|=+=. -.++.+.+..+.+.+... ......+.|....+-. .+.
T Consensus 6 LRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 85 (273)
T cd07941 6 LRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQ 85 (273)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHH
Q ss_pred HHHhcCCCeEee------------cCCCCHHHHHHHHHHcCCCCCCCCCCcccccccccCCCCccccccCCCceEEEEE-
Q 018508 152 KALDLGPQGVMF------------PMIDSPEAAKEAVSYCRFPPSGVRGSAHTVVRASGYGIDEGYLSNYEEELLIMCQ- 218 (355)
Q Consensus 152 ~aLdaGa~GImv------------P~Vesaeea~~vv~a~~~pP~G~Rg~g~~~~ra~~~g~~~~y~~~~n~~i~vi~m- 218 (355)
++++.|.+.|.+ ..-...+.++.+.+.+++. ....-.+.+.++
T Consensus 86 ~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~a------------------------k~~G~~v~~~~~~ 141 (273)
T cd07941 86 ALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYL------------------------KSHGREVIFDAEH 141 (273)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHH------------------------HHcCCeEEEeEEe
Q ss_pred -----EccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCC-ceeecccCCc----
Q 018508 219 -----VESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGK-AYLAGFAMPH---- 288 (355)
Q Consensus 219 -----IET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~-~~~g~~~~d~---- 288 (355)
.-+++-+..+-+-+.-.|+|.|.+ .+.-.-.....+.+++.+.+++-. ..++..+.+-
T Consensus 142 ~~d~~~~~~~~~~~~~~~~~~~g~~~i~l------------~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla 209 (273)
T cd07941 142 FFDGYKANPEYALATLKAAAEAGADWLVL------------CDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLA 209 (273)
T ss_pred ccccCCCCHHHHHHHHHHHHhCCCCEEEE------------ecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcH
Q ss_pred -hhHHHHHHCCCCEEEec
Q 018508 289 -DAPLEMKSRGYHMVSGA 305 (355)
Q Consensus 289 -~~a~~~~~~G~~~vs~~ 305 (355)
+.+...++.|++.+-.+
T Consensus 210 ~An~laA~~aGa~~id~s 227 (273)
T cd07941 210 VANSLAAVEAGATQVQGT 227 (273)
T ss_pred HHHHHHHHHcCCCEEEEe
No 492
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.03 E-value=1.3e+02 Score=28.39 Aligned_cols=84 Identities=15% Similarity=-0.064 Sum_probs=0.0
Q ss_pred CCCCCCCCCCchHHHHHHHcCCcEEEEEE-ecCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEc
Q 018508 63 DPLSPSPSPSPESLKYRLQSNETLYGLFL-LSFSPTLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILR 141 (355)
Q Consensus 63 ~~~~~~~~~~~n~lk~~L~~G~~~~gl~v-~~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVR 141 (355)
+.+.|...+....|++.....-|-+-+-+ ..-+++.++.+..+|++|++
T Consensus 47 T~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV------------------------------ 96 (222)
T PRK07114 47 TNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV------------------------------ 96 (222)
T ss_pred eCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE------------------------------
Q ss_pred CCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHHHH
Q 018508 142 LPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAVSY 178 (355)
Q Consensus 142 V~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv~a 178 (355)
-|..++..+..+.+.|. ..+|-+-|+.|+.++.++
T Consensus 97 sP~~~~~v~~~~~~~~i--~~iPG~~TpsEi~~A~~~ 131 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKV--PYSPGCGSLSEIGYAEEL 131 (222)
T ss_pred CCCCCHHHHHHHHHcCC--CEeCCCCCHHHHHHHHHC
No 493
>PRK07328 histidinol-phosphatase; Provisional
Probab=43.02 E-value=1.1e+02 Score=29.04 Aligned_cols=90 Identities=20% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHhccCCccEEEEChhhHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCce---ee-------cccCCchhHHHHHHCC
Q 018508 229 EDIAAVDGVDCVQMGPLDLSASMGYLWDPGHRKVREMMRVAEKGVLGGGKAY---LA-------GFAMPHDAPLEMKSRG 298 (355)
Q Consensus 229 eeIaavpgVD~l~iGp~DLs~slG~~~~~~~p~v~~ai~~iv~aa~a~g~~~---~g-------~~~~d~~~a~~~~~~G 298 (355)
.+.+..+.+ -++|--||-.-.+... ...+...++++++++.++|+.. .+ ..+...+..+.+.++|
T Consensus 147 ~~~~~~~~~--dvlgH~d~i~~~~~~~---~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g 221 (269)
T PRK07328 147 EQAARSGLF--DIIGHPDLIKKFGHRP---REDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERG 221 (269)
T ss_pred HHHHHcCCC--CEeeCccHHHHcCCCC---chhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcC
Confidence 333344444 4788889866555421 1335667789999999988753 11 1222346678899999
Q ss_pred CCEEEecchHHH---HHHHHHHHHHHHHH
Q 018508 299 YHMVSGAVDVGL---FRSAAVEDVARFKM 324 (355)
Q Consensus 299 ~~~vs~~~D~~l---l~~~~~~~~~~~r~ 324 (355)
.. +++|+|.-- +...+.++++-++.
T Consensus 222 ~~-itigSDAH~~~~vg~~~~~a~~~l~~ 249 (269)
T PRK07328 222 IP-VVLGSDAHRPEEVGFGFAEALALLKE 249 (269)
T ss_pred CC-EEEeCCCCCHHHHhccHHHHHHHHHH
Confidence 97 789999632 23344445555554
No 494
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.73 E-value=1.4e+02 Score=27.54 Aligned_cols=74 Identities=8% Similarity=0.066 Sum_probs=49.3
Q ss_pred cEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCCC---------CCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHh
Q 018508 85 TLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHGP---------GGISDALACLHALAATGTPAILRLPESCPTWAKKALD 155 (355)
Q Consensus 85 ~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~~---------~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLd 155 (355)
..+|+- ..+.+.+..+...|+||+++=-=... ...+...+.+ ...-..|++=+.+.++..+..++.
T Consensus 103 ~~iG~S--~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~---~~~~~~PV~AiGGI~~~ni~~l~~ 177 (211)
T PRK03512 103 LRLGVS--THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHV---ERLADYPTVAIGGISLERAPAVLA 177 (211)
T ss_pred CEEEEe--CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHH---HhcCCCCEEEECCCCHHHHHHHHH
Confidence 345544 46777788888899999998644332 2233333322 221235677788899999999999
Q ss_pred cCCCeEee
Q 018508 156 LGPQGVMF 163 (355)
Q Consensus 156 aGa~GImv 163 (355)
+|++||-+
T Consensus 178 ~Ga~GiAv 185 (211)
T PRK03512 178 TGVGSIAV 185 (211)
T ss_pred cCCCEEEE
Confidence 99998754
No 495
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=42.02 E-value=47 Score=29.34 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=36.9
Q ss_pred CceEEEEEEccHHHHHHHHHHhccCCccEEEEChhhHHhhcCCC
Q 018508 211 EELLIMCQVESEEGVKRAEDIAAVDGVDCVQMGPLDLSASMGYL 254 (355)
Q Consensus 211 ~~i~vi~mIET~~av~nieeIaavpgVD~l~iGp~DLs~slG~~ 254 (355)
+.+-++++|+|.+++..+.+++ ||+..+=.--.||+..||+.
T Consensus 89 ~AvGlVVNV~t~~~L~~Lr~la--pgl~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 89 GAVGLVVNVATEAALQRLRQLA--PGLPLLPVSGDDLARRLGLS 130 (142)
T ss_pred CCeEEEEecCCHHHHHHHHHHc--CCCeecCCCHHHHHHHhCCC
Confidence 3478999999999999999999 58888888889999999875
No 496
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=41.76 E-value=3.3e+02 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=33.2
Q ss_pred CCCCCCCchHHHHHHHcCCcEEEEEEecCCHHHHHHhhhcCCcEEEEeCCCC
Q 018508 66 SPSPSPSPESLKYRLQSNETLYGLFLLSFSPTLAEISGLAGYDFVVVDMEHG 117 (355)
Q Consensus 66 ~~~~~~~~n~lk~~L~~G~~~~gl~v~~~sp~~~e~aa~~G~D~vilDlEh~ 117 (355)
+|+.-+....+-+.+++....+.+-.|+..++.++.+ ..+.|.+.||+...
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~ 190 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLEKL-EEEPTQLYVSLDAP 190 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHHHH-HhcCCEEEEEccCC
Confidence 3433333445555555433445555667778888888 66899999999976
No 497
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=41.26 E-value=2.2e+02 Score=28.94 Aligned_cols=69 Identities=28% Similarity=0.297 Sum_probs=43.1
Q ss_pred cCCHHHHHHhhhcCCcEEEEeCCCCCCCHHHH---HHHHHHH-HhCCCCeEEcCCCC-CHHHHHHHHhcCCCeEee
Q 018508 93 SFSPTLAEISGLAGYDFVVVDMEHGPGGISDA---LACLHAL-AATGTPAILRLPES-CPTWAKKALDLGPQGVMF 163 (355)
Q Consensus 93 ~~sp~~~e~aa~~G~D~vilDlEh~~~~~~~a---~~~i~a~-~~~g~~~iVRV~~~-~~~~i~~aLdaGa~GImv 163 (355)
+-+++.++.+...|+|.|++= .|+....+.+ .+.+..+ +..+.++++ =.+. ...++.++|..||+.|++
T Consensus 244 V~~~eda~~a~~~G~d~I~VS-nhGGrqld~~~~~~~~L~ei~~~~~~~vi~-dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 244 IVTAEDAKRCIELGADGVILS-NHGGRQLDDAIAPIEALAEIVAATYKPVLI-DSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred CCCHHHHHHHHHCCcCEEEEC-CCCcCCCcCCccHHHHHHHHHHHhCCeEEE-eCCCCCHHHHHHHHHcCCCEEEE
Confidence 479999999999999999885 4554332211 1122222 223444332 1222 356799999999999887
No 498
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=41.05 E-value=1.3e+02 Score=21.23 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=44.3
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEEcCCCCCHHHHHHHHhcCCCeEeecCCCCHHHHHHHH
Q 018508 97 TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAILRLPESCPTWAKKALDLGPQGVMFPMIDSPEAAKEAV 176 (355)
Q Consensus 97 ~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iVRV~~~~~~~i~~aLdaGa~GImvP~Vesaeea~~vv 176 (355)
...+.+....+|.+++|.+....+.......++.. ....+.++-...........++..|+.+++.- --+.+++...+
T Consensus 32 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-p~~~~~l~~~l 109 (113)
T cd00156 32 EALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR-GPDIPIIFLTAHGDDEDAVEALKAGADDYLTK-PFSPEELLARI 109 (113)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCchHHHHHHHHHh-CCCCCEEEEEecccHHHHHHHHHcChhhHccC-CCCHHHHHHHH
Confidence 34455666689999999887654433433444332 23344444333334455667788888775443 33445555444
Q ss_pred H
Q 018508 177 S 177 (355)
Q Consensus 177 ~ 177 (355)
+
T Consensus 110 ~ 110 (113)
T cd00156 110 R 110 (113)
T ss_pred H
Confidence 3
No 499
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=41.01 E-value=29 Score=37.45 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=69.1
Q ss_pred CchHHHHHHHcCCcEEEEEEecCCH--HHHHHhhhcCCcEEEEeCCCCCCCHHHHHHHHHHHHhCCCCeEE-----cCCC
Q 018508 72 SPESLKYRLQSNETLYGLFLLSFSP--TLAEISGLAGYDFVVVDMEHGPGGISDALACLHALAATGTPAIL-----RLPE 144 (355)
Q Consensus 72 ~~n~lk~~L~~G~~~~gl~v~~~sp--~~~e~aa~~G~D~vilDlEh~~~~~~~a~~~i~a~~~~g~~~iV-----RV~~ 144 (355)
.||...|.|-.|+..+|+--.-.+. ..++.++..|.|++ -.=|+..+.+.+...+.+++..|..+.. --+-
T Consensus 73 ~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~--Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~ 150 (596)
T PRK14042 73 LPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVF--RVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPV 150 (596)
T ss_pred CCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEE--EEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCC
Confidence 4555556666666666654322222 26788999999973 2334556667777777777666653221 1122
Q ss_pred CCHH----HHHHHHhcCCCeEeecC---CCCHHHHHHHHHHcCC
Q 018508 145 SCPT----WAKKALDLGPQGVMFPM---IDSPEAAKEAVSYCRF 181 (355)
Q Consensus 145 ~~~~----~i~~aLdaGa~GImvP~---Vesaeea~~vv~a~~~ 181 (355)
+... .++++.++|++.|.+.- +-+|+++.+++++++.
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~ 194 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQ 194 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHh
Confidence 2333 35678899999988875 3689999999998874
No 500
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=40.85 E-value=1.7e+02 Score=28.24 Aligned_cols=77 Identities=14% Similarity=-0.014 Sum_probs=49.0
Q ss_pred HHHHhhhcC-CcEEEEeCCCC---CCCHHHHHHHHHHH-H--hCCCCeEEcCCCCCHH----HHHHHHhcCCCeEee--c
Q 018508 98 LAEISGLAG-YDFVVVDMEHG---PGGISDALACLHAL-A--ATGTPAILRLPESCPT----WAKKALDLGPQGVMF--P 164 (355)
Q Consensus 98 ~~e~aa~~G-~D~vilDlEh~---~~~~~~a~~~i~a~-~--~~g~~~iVRV~~~~~~----~i~~aLdaGa~GImv--P 164 (355)
.++.+...| .|.|++=---| ..+.++-.++++.+ + ....++++=|...+.. .++.+.+.|+++||+ |
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 456667788 89888874333 45666666666543 2 2346778888776654 357788999999886 3
Q ss_pred C--CCCHHHHHH
Q 018508 165 M--IDSPEAAKE 174 (355)
Q Consensus 165 ~--Vesaeea~~ 174 (355)
+ --|.+++..
T Consensus 106 ~y~~~~~~~i~~ 117 (290)
T TIGR00683 106 FYYKFSFPEIKH 117 (290)
T ss_pred cCCCCCHHHHHH
Confidence 2 134566544
Done!