BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018509
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR7|B Chain B, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR8|A Chain A, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
pdb|3FR8|B Chain B, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
Length = 525
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 155 GWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSAL-RRVIARRVSLKITLKR 213
GW+ SPF+F +L+ E +++ + G + +++ + GI+ AL RR + + ++ K
Sbjct: 222 GWSVALGSPFTFATTLEQEYKSD-IFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKN 280
Query: 214 RLHAIT 219
+ IT
Sbjct: 281 TVEGIT 286
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 90 GITALYFILWGKGLKSCGPVRALLAEYSGAVLGVLSAVLYGR-RGHVWKKVGGLIAILAS 148
G+ YF+++ KG+K G LL Y G V++A + R + VW K G +++LA+
Sbjct: 459 GVKIPYFLVYKKGIKFDGKNPTLLEAYGG--FQVINAPYFSRIKNEVWVKNAG-VSVLAN 515
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 155 GWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSAL-RRVIARRVSLKITLKR 213
GW+ SPF+F +L+ E +++ + G + +++ + GI+ L RR +S + K
Sbjct: 222 GWSIALGSPFTFATTLEQEYKSD-IFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKN 280
Query: 214 RLHAIT 219
+ IT
Sbjct: 281 TVECIT 286
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W E S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRIDASKHMWP--GDIKAILDKLHNLNSNWFPEGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1VGO|A Chain A, Crystal Structure Of Archaerhodopsin-2
pdb|1VGO|B Chain B, Crystal Structure Of Archaerhodopsin-2
pdb|2EI4|A Chain A, Trimeric Complex Of Archaerhodopsin-2
pdb|2Z55|A Chain A, Bacterioruberin In The Trimeric Structure Of
Archaerhodopsin-2
pdb|2Z55|B Chain B, Bacterioruberin In The Trimeric Structure Of
Archaerhodopsin-2
pdb|2Z55|D Chain D, Bacterioruberin In The Trimeric Structure Of
Archaerhodopsin-2
pdb|2Z55|E Chain E, Bacterioruberin In The Trimeric Structure Of
Archaerhodopsin-2
Length = 253
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 130 GRRGHVWKKVGGLIAILASFYFLSQGWA 157
GR +W +G L+ ++ +FYF+++GW
Sbjct: 10 GRPETLWLGIGTLLMLIGTFYFIARGWG 37
>pdb|1UAZ|A Chain A, Crystal Structure Of Archaerhodopsin-1
pdb|1UAZ|B Chain B, Crystal Structure Of Archaerhodopsin-1
Length = 254
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 130 GRRGHVWKKVGGLIAILASFYFLSQGWA 157
GR +W +G L+ ++ +FYF+ +GW
Sbjct: 12 GRPETLWLGIGTLLMLIGTFYFIVKGWG 39
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 109 VRALLAEYSGAVL--GVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSF 166
VR+ +AEY ++ GV L + H+W G + AIL + L+ W S PF +
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFALDASK-HMWP--GDIKAILDKLHNLNSNWFPAGSKPFIY 231
Query: 167 KDSLD 171
++ +D
Sbjct: 232 QEVID 236
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 125 SAVLYGRRGHVWKKVGGLIAILAS 148
AVLYG +GH W + G + +L
Sbjct: 488 DAVLYGEQGHPWGRFGAALTVLGD 511
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLAASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 109 VRALLAEYSGAVL--GVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSF 166
VR+ +AEY ++ GV L + H+W G + AIL + L+ W S PF +
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFQLDASK-HMWP--GDIKAILDKLHNLNSNWFPAGSKPFIY 231
Query: 167 KDSLD 171
++ +D
Sbjct: 232 QEVID 236
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+ +AEY ++ + ++ H+W G + AIL + L+ W S PF ++
Sbjct: 175 VRSKIAEYMNHLIDIGVAGFRLDASKHMWP--GDIKAILDKLHNLNSNWFPAGSKPFIYQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 109 VRALLAEYSGAVLGV-LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFK 167
VR+++A+Y ++ + ++ H+W G + A+L + L+ W S PF F+
Sbjct: 175 VRSMIADYLNKLIDIGVAGFRIDASKHMWP--GDIKAVLDKLHNLNTNWFPAGSRPFIFQ 232
Query: 168 DSLD 171
+ +D
Sbjct: 233 EVID 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,700,139
Number of Sequences: 62578
Number of extensions: 366651
Number of successful extensions: 832
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 38
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)