Query 018509
Match_columns 355
No_of_seqs 71 out of 73
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 2.7E-19 6E-24 177.4 28.3 273 46-325 41-328 (358)
2 TIGR00817 tpt Tpt phosphate/ph 99.7 2E-16 4.3E-21 150.8 21.0 261 46-331 30-299 (302)
3 PRK11272 putative DMT superfam 99.7 4.9E-15 1.1E-19 141.3 25.3 277 19-328 7-288 (292)
4 TIGR00950 2A78 Carboxylate/Ami 99.7 2E-15 4.4E-20 139.1 21.3 239 46-320 17-259 (260)
5 PRK10532 threonine and homoser 99.7 9.8E-15 2.1E-19 139.5 26.1 246 45-329 38-285 (293)
6 PRK11453 O-acetylserine/cystei 99.7 3.9E-15 8.4E-20 142.4 23.4 257 45-331 30-293 (299)
7 PRK11689 aromatic amino acid e 99.6 2.3E-14 5E-19 137.0 21.9 256 46-330 31-292 (295)
8 PRK15430 putative chlorampheni 99.6 1.2E-13 2.5E-18 132.3 22.3 255 45-332 33-294 (296)
9 PTZ00343 triose or hexose phos 99.6 1.2E-12 2.5E-17 129.1 25.3 254 46-324 76-347 (350)
10 TIGR03340 phn_DUF6 phosphonate 99.6 1.6E-12 3.5E-17 123.2 23.9 221 77-322 58-280 (281)
11 TIGR00688 rarD rarD protein. T 99.4 5.2E-11 1.1E-15 111.0 23.3 220 45-298 27-254 (256)
12 COG0697 RhaT Permeases of the 99.4 5.4E-10 1.2E-14 102.6 26.5 244 50-325 39-287 (292)
13 PF08449 UAA: UAA transporter 99.0 4.8E-08 1E-12 94.1 21.4 262 47-329 32-301 (303)
14 COG5006 rhtA Threonine/homoser 98.9 4.3E-07 9.4E-12 87.4 21.3 253 32-324 20-281 (292)
15 PF06027 DUF914: Eukaryotic pr 98.7 6.8E-06 1.5E-10 81.8 23.1 253 48-321 44-301 (334)
16 PF00892 EamA: EamA-like trans 98.4 2E-06 4.4E-11 69.5 8.5 106 46-152 18-125 (126)
17 TIGR00776 RhaT RhaT L-rhamnose 98.3 0.00013 2.7E-09 70.5 20.6 215 80-322 57-285 (290)
18 COG2962 RarD Predicted permeas 98.1 0.00087 1.9E-08 65.7 21.3 251 33-324 18-282 (293)
19 PF13536 EmrE: Multidrug resis 98.1 1.8E-05 3.9E-10 65.9 8.1 101 52-152 2-105 (113)
20 PF00892 EamA: EamA-like trans 98.0 3.7E-05 8E-10 62.1 7.8 122 193-322 1-123 (126)
21 TIGR03340 phn_DUF6 phosphonate 97.7 0.00081 1.8E-08 63.9 14.2 132 185-324 3-134 (281)
22 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.005 1.1E-07 53.6 12.4 117 185-325 4-122 (129)
23 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0051 1.1E-07 56.8 13.0 94 53-148 164-259 (260)
24 KOG1441 Glucose-6-phosphate/ph 97.0 0.0065 1.4E-07 60.5 11.5 248 47-327 48-309 (316)
25 PF03151 TPT: Triose-phosphate 96.9 0.021 4.5E-07 48.7 12.4 134 186-321 3-149 (153)
26 PRK11689 aromatic amino acid e 96.8 0.026 5.6E-07 54.3 13.2 78 75-152 208-286 (295)
27 PRK11272 putative DMT superfam 96.7 0.047 1E-06 52.3 13.8 75 78-152 208-284 (292)
28 COG2510 Predicted membrane pro 96.6 0.021 4.5E-07 50.6 10.0 105 47-151 31-137 (140)
29 PLN00411 nodulin MtN21 family 96.6 0.029 6.4E-07 56.3 12.4 68 85-152 259-327 (358)
30 KOG2765 Predicted membrane pro 96.5 0.05 1.1E-06 55.5 13.2 226 84-336 157-402 (416)
31 PRK10532 threonine and homoser 96.3 0.1 2.2E-06 50.1 13.8 75 78-152 204-280 (293)
32 PRK11453 O-acetylserine/cystei 96.3 0.098 2.1E-06 50.3 13.5 77 76-152 208-286 (299)
33 PRK15430 putative chlorampheni 96.1 0.08 1.7E-06 50.9 11.8 129 187-322 12-142 (296)
34 PF04142 Nuc_sug_transp: Nucle 95.9 0.44 9.6E-06 45.4 15.9 120 80-210 15-141 (244)
35 PF03151 TPT: Triose-phosphate 95.7 0.18 4E-06 42.9 11.1 71 80-150 79-150 (153)
36 TIGR00776 RhaT RhaT L-rhamnose 95.4 0.16 3.5E-06 49.1 10.9 108 42-151 173-286 (290)
37 TIGR00688 rarD rarD protein. T 95.4 0.32 7E-06 45.4 12.6 131 185-321 4-138 (256)
38 PRK15051 4-amino-4-deoxy-L-ara 94.9 0.35 7.6E-06 40.8 10.1 67 257-324 42-108 (111)
39 COG0697 RhaT Permeases of the 94.5 1.2 2.5E-05 40.9 13.5 78 75-152 207-286 (292)
40 PRK15051 4-amino-4-deoxy-L-ara 94.3 0.28 6.1E-06 41.4 8.4 74 78-152 30-108 (111)
41 PTZ00343 triose or hexose phos 94.2 0.32 6.8E-06 48.4 9.9 69 83-151 273-346 (350)
42 KOG1581 UDP-galactose transpor 93.8 3.4 7.5E-05 41.4 15.9 268 30-324 19-312 (327)
43 KOG1580 UDP-galactose transpor 93.8 4.9 0.00011 39.5 16.5 199 100-321 103-309 (337)
44 PF05653 Mg_trans_NIPA: Magnes 93.7 1.7 3.8E-05 42.7 13.7 77 249-325 210-292 (300)
45 TIGR00817 tpt Tpt phosphate/ph 93.2 1.7 3.7E-05 41.6 12.6 124 193-324 12-136 (302)
46 KOG4510 Permease of the drug/m 92.9 0.15 3.2E-06 50.4 4.8 130 30-171 47-178 (346)
47 PF04657 DUF606: Protein of un 92.0 3.1 6.6E-05 36.5 11.5 129 186-321 4-137 (138)
48 PF13536 EmrE: Multidrug resis 91.7 0.77 1.7E-05 38.0 7.1 68 255-324 38-105 (113)
49 COG2510 Predicted membrane pro 91.4 3.6 7.9E-05 36.7 11.1 116 202-322 21-136 (140)
50 PF06800 Sugar_transport: Suga 90.1 20 0.00044 35.2 16.5 232 60-320 25-266 (269)
51 KOG3912 Predicted integral mem 89.9 15 0.00032 37.0 15.1 214 87-322 91-331 (372)
52 KOG2234 Predicted UDP-galactos 89.5 27 0.00058 35.7 20.4 246 47-324 47-321 (345)
53 PRK10452 multidrug efflux syst 89.0 2.5 5.4E-05 36.6 8.2 70 257-327 35-105 (120)
54 PF04657 DUF606: Protein of un 88.7 4.2 9.2E-05 35.6 9.5 103 46-149 29-137 (138)
55 PRK02971 4-amino-4-deoxy-L-ara 88.5 2.2 4.8E-05 37.1 7.5 68 85-152 50-121 (129)
56 PRK09541 emrE multidrug efflux 87.8 2.8 6E-05 35.6 7.6 69 256-325 34-103 (110)
57 TIGR00803 nst UDP-galactose tr 86.2 11 0.00023 34.6 11.1 37 285-322 185-221 (222)
58 PRK11431 multidrug efflux syst 83.5 5 0.00011 33.9 7.0 71 252-323 29-100 (105)
59 PRK10650 multidrug efflux syst 82.6 5.2 0.00011 34.1 6.8 70 252-322 35-105 (109)
60 PF00893 Multi_Drug_Res: Small 81.9 9.7 0.00021 31.0 7.9 57 257-314 34-91 (93)
61 KOG1582 UDP-galactose transpor 78.4 79 0.0017 31.9 16.2 221 78-330 102-337 (367)
62 PF10639 UPF0546: Uncharacteri 74.5 20 0.00044 30.9 8.0 110 189-322 2-111 (113)
63 PF08449 UAA: UAA transporter 73.6 12 0.00027 36.0 7.3 106 46-151 183-295 (303)
64 KOG2765 Predicted membrane pro 70.4 13 0.00028 38.5 6.9 97 54-151 290-388 (416)
65 COG2076 EmrE Membrane transpor 68.6 55 0.0012 28.0 9.2 65 259-324 37-102 (106)
66 PRK10650 multidrug efflux syst 67.6 34 0.00074 29.1 7.8 56 95-151 48-106 (109)
67 KOG4510 Permease of the drug/m 66.5 15 0.00033 36.7 6.2 71 252-327 99-171 (346)
68 PRK10452 multidrug efflux syst 66.5 32 0.00068 29.8 7.5 57 94-151 42-101 (120)
69 PRK09541 emrE multidrug efflux 66.2 37 0.00081 28.8 7.8 57 94-151 42-101 (110)
70 PF06800 Sugar_transport: Suga 63.0 1.2E+02 0.0025 30.0 11.6 128 17-152 135-263 (269)
71 PRK11431 multidrug efflux syst 61.6 49 0.0011 27.9 7.6 57 94-151 41-100 (105)
72 COG4975 GlcU Putative glucose 53.6 13 0.00029 36.6 3.3 130 205-342 20-153 (288)
73 PF00893 Multi_Drug_Res: Small 51.8 40 0.00086 27.3 5.4 50 93-143 40-92 (93)
74 PF06027 DUF914: Eukaryotic pr 48.8 2.5E+02 0.0054 28.4 11.5 59 94-152 245-304 (334)
75 KOG1583 UDP-N-acetylglucosamin 46.3 1.8E+02 0.0039 29.4 9.8 133 185-323 166-312 (330)
76 KOG2922 Uncharacterized conser 42.0 70 0.0015 32.6 6.4 40 113-152 96-135 (335)
77 COG2076 EmrE Membrane transpor 41.9 1.5E+02 0.0032 25.4 7.4 57 94-151 42-101 (106)
78 KOG1580 UDP-galactose transpor 40.5 37 0.0008 33.5 4.1 72 81-152 240-312 (337)
79 PF04306 DUF456: Protein of un 39.3 1.9E+02 0.0041 25.5 8.1 68 248-323 30-97 (140)
80 PF05399 EVI2A: Ectropic viral 38.0 22 0.00048 34.1 2.1 50 286-344 127-178 (227)
81 PF03825 Nuc_H_symport: Nucleo 36.6 4.7E+02 0.01 26.5 14.5 58 209-278 64-122 (400)
82 COG2839 Uncharacterized protei 34.5 2.4E+02 0.0053 25.9 8.0 64 250-313 49-140 (160)
83 TIGR00803 nst UDP-galactose tr 31.4 1.1E+02 0.0024 27.9 5.5 57 92-148 162-219 (222)
84 PHA02680 ORF090 IMV phosphoryl 29.6 1.4E+02 0.0031 25.0 5.2 55 56-110 19-76 (91)
85 KOG4314 Predicted carbohydrate 27.3 2.6E+02 0.0057 27.1 7.3 92 96-207 67-159 (290)
86 COG1953 FUI1 Cytosine/uracil/t 21.4 4.3E+02 0.0094 28.5 8.3 78 188-278 339-421 (497)
87 PRK06638 NADH:ubiquinone oxido 21.2 5.9E+02 0.013 23.6 8.4 30 285-321 130-159 (198)
88 PF05767 Pox_A14: Poxvirus vir 20.8 2.3E+02 0.005 23.8 5.0 51 58-109 21-75 (92)
89 PRK07668 hypothetical protein; 20.6 8.1E+02 0.018 24.0 10.8 133 178-327 109-244 (254)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.86 E-value=2.7e-19 Score=177.40 Aligned_cols=273 Identities=9% Similarity=0.110 Sum_probs=202.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPW-KGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGV 123 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~ 123 (355)
+|..++.+||.++....+++.+.+|+. .-++.++++|.++...|++++++..+++.|++|+.|-++.+ ...+|..+.+
T Consensus 41 ~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~l 120 (358)
T PLN00411 41 NIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFI 120 (358)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHH
Confidence 778999999999988888887766432 12334567889999999999888889999999999999999 9999999999
Q ss_pred HHHHH------hCCCCCcchhhHHHHHHHHHHHHhhcc-cccccc--cCCc-cCCcchHh-hhhhhhhccchhHHHHHHH
Q 018509 124 LSAVL------YGRRGHVWKKVGGLIAILASFYFLSQG-WATETS--SPFS-FKDSLDAE-LRTEQVLGMKEMVVPLLAG 192 (355)
Q Consensus 124 Ls~lf------~g~~~~~~k~rG~~l~~igvl~lLs~g-w~~~~~--~pf~-lfd~d~~~-~~~~~~lG~~Dv~Lli~a~ 192 (355)
++.+| .+|+.+++|..|.++.+.|+..++..+ .....+ .++. .+..++.. ....+.. .+|. +.+.|.
T Consensus 121 la~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~-l~l~aa 198 (358)
T PLN00411 121 LAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWL-IGGA-LLTIQG 198 (358)
T ss_pred HHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHH-HHHH-HHHHHH
Confidence 99999 599999999999999999999887543 322111 1100 00000000 0000111 2333 788999
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCC-Ccch-hHHHHHHHHHHHHHHHHHHHHH
Q 018509 193 ILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSS-VDLP-FSAWAFLSTTLFGIILIFYVDA 270 (355)
Q Consensus 193 ~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s-~~~~-~~~w~~l~~~vF~~VL~fyves 270 (355)
++|+.|-+..||+..++......+++..+++++...+++++.. +.+... ...+ ...|..++.+++ ..+.|+.++
T Consensus 199 ~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~ 274 (358)
T PLN00411 199 IFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE---KNNPSVWIIHFDITLITIVTMAII-TSVYYVIHS 274 (358)
T ss_pred HHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc---cCCcccceeccchHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999888755556677776766666666555421 111011 0001 122333666665 568999999
Q ss_pred HHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Q 018509 271 MAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATS 325 (355)
Q Consensus 271 i~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~ 325 (355)
.+.+|+++++++.+.+++|.++++...++++|.+++.+ ++|++++..|++..+.
T Consensus 275 ~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~-~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 275 WTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC-LIGGILITLGFYAVMW 328 (358)
T ss_pred HHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 9999999999998875
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.74 E-value=2e-16 Score=150.83 Aligned_cols=261 Identities=12% Similarity=-0.025 Sum_probs=192.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVL 124 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~L 124 (355)
.|..++..+|.++.....++.....+ +.+++++++|++++..|++++++..+++.|++|..+-++.+ ...+|....++
T Consensus 30 ~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll 108 (302)
T TIGR00817 30 YPYFKTLISLAVGSLYCLLSWSSGLP-KRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVL 108 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHH
Confidence 57788888888876554443111112 23567889999999999999999999999999999998888 99999999999
Q ss_pred HHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Q 018509 125 SAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARR 204 (355)
Q Consensus 125 s~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr 204 (355)
+.++++|+.++++..|.++.+.|+.... . ...+++ . .+|+ +.++|.++++.|.+..||
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~-----~~~~~~-------------~--~G~~-~~l~a~~~~a~~~v~~k~ 166 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALAS-D-----TELSFN-------------W--AGFL-SAMISNITFVSRNIFSKK 166 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhc-C-----Cccccc-------------H--HHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999996542 0 001111 1 3665 788899999999999999
Q ss_pred hhh--hcccchhHHHHHHHHHHHHHhHHHHHHh-hhccCCCCCC----cchhHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 018509 205 VSL--KITLKRRLHAITITSATCFLFPVAMWDL-IIGSKSSSSV----DLPFSAWAF-LSTTLFGIILIFYVDAMAEERL 276 (355)
Q Consensus 205 ~s~--~~gg~kRL~Alt~l~stv~L~P~al~~~-~~~~~s~~s~----~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl 276 (355)
... +. ++-.+..+....+++++.|++.+.. ......+... ......|.. +........+.++.+..+.+|.
T Consensus 167 ~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (302)
T TIGR00817 167 AMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRV 245 (302)
T ss_pred hhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 987 44 6788999999999999999986421 1000000000 000111221 1111111222224555789999
Q ss_pred cccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCCCC
Q 018509 277 HMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHGRK 331 (355)
Q Consensus 277 ~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~~~ 331 (355)
++.+.+...++.|+++++...+++||++|..+ ++|+.++..|++..+..+.+||
T Consensus 246 sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~-~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 246 SPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ-VFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred CchHHHHHhhhhhhheeeeehhhcCCCCchhH-HHHHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999 9999999999998876554444
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.71 E-value=4.9e-15 Score=141.25 Aligned_cols=277 Identities=12% Similarity=-0.004 Sum_probs=206.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhh-hhccCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHH
Q 018509 19 TPLQILHIIASFLRIWSVYSMYR-YLSQTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYF 96 (355)
Q Consensus 19 ~~~~~~l~~~k~lr~~~i~~~y~-~l~~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~ 96 (355)
-|.+..++..-++-.-+--..=. .-..+|..++.+||.++....+++...+|.. ..++++|......|..+. ++.
T Consensus 7 ~~~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 7 LPLFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHH
Confidence 46666666654443221111111 1123789999999999988877777666533 235778998888888874 777
Q ss_pred HHHHhcc-cccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhh
Q 018509 97 ILWGKGL-KSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAEL 174 (355)
Q Consensus 97 lLwf~gL-~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~ 174 (355)
.+.+.+. ++.++-.+.+ ...+|....+++.+ .||+.+.+|..|.++.++|++.+. .|++.
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~--------------~~~~~--- 145 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN--------------SGGNL--- 145 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh--------------cCccc---
Confidence 8888898 7777766777 88899988888876 599999999999999999988764 11100
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH
Q 018509 175 RTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF 254 (355)
Q Consensus 175 ~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~ 254 (355)
+....+|. ..+++.++++.|.+..||...+. +....++...+++.++.|++.... +. ..... ....|..
T Consensus 146 ---~~~~~G~l-~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~-~~~~~~~ 214 (292)
T PRK11272 146 ---SGNPWGAI-LILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSG---ER-LTALP-TLSGFLA 214 (292)
T ss_pred ---ccchHHHH-HHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcC---Cc-ccccC-CHHHHHH
Confidence 00013555 78889999999999999986432 345667888888888888875431 11 11101 1344666
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCC
Q 018509 255 -LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDH 328 (355)
Q Consensus 255 -l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~ 328 (355)
++.+++++++.|+.++.+.+|+++.+.+...++.|.++++...++++|.+|+.+ .+|+.+++.|++..+..++
T Consensus 215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~-iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE-WLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999 9999999999998775444
No 4
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.70 E-value=2e-15 Score=139.14 Aligned_cols=239 Identities=14% Similarity=0.139 Sum_probs=187.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGV 123 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~ 123 (355)
+|..++..|++...+...++.. +| .+++||.+.+..|.++. ++..++++|+++.++-++.+ ...+|..+.+
T Consensus 17 ~~~~~~~~r~~~~~l~l~~~~~-~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~ 89 (260)
T TIGR00950 17 PLYFAVFRRLIFALLLLLPLLR-RR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTL 89 (260)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-hc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHH
Confidence 3345555555555444443332 22 35678888888888875 99999999999999888888 8899999999
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Q 018509 124 LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIAR 203 (355)
Q Consensus 124 Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sR 203 (355)
++.++.+||.+++|..|.++.++|+.++...| +++ .+ ..+++ +.+++.++++.+....|
T Consensus 90 ~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~-------------~~~-----~~--~~G~~-~~l~a~~~~a~~~~~~k 148 (260)
T TIGR00950 90 LSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG-------------NLS-----IN--PAGLL-LGLGSGISFALGTVLYK 148 (260)
T ss_pred HHHHHccCCCcHHHHHHHHHHHHhHHhhccCC-------------ccc-----cc--HHHHH-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986222 000 01 13444 88999999999999999
Q ss_pred hhhhhccc-chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhccccc
Q 018509 204 RVSLKITL-KRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHMVFS 281 (355)
Q Consensus 204 r~s~~~gg-~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~~s 281 (355)
+...+.+. +-..+++...+++++++|+..... +.... ....|.. ++..+++.++.|.....+.++.+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 149 RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG---PNPQA----LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC---CCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 99876632 234555678899999999876532 11111 2345655 888999999999999999999999999
Q ss_pred CcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhh
Q 018509 282 SPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGI 320 (355)
Q Consensus 282 s~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv 320 (355)
+...++.|.+.++...++++|+++..+ .++++++..|+
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~-~~G~~li~~g~ 259 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQ-LIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHhc
Confidence 999999999999999999999999999 99999988886
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.70 E-value=9.8e-15 Score=139.46 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=185.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHH
Q 018509 45 QTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGV 123 (355)
Q Consensus 45 ~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~ 123 (355)
.+|..++.+||+++.+..+++.. +. .++.++++|...+..|........+++.|+++.++-.+.. .-.+|....+
T Consensus 38 ~~~~~~~~~R~~~a~l~l~~~~~---~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~l 113 (293)
T PRK10532 38 VGAPGVTALRLALGTLILIAIFK---PW-RLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVAL 113 (293)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh---HH-hccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 47788999999998766654432 22 2245678898888888888888999999999998887766 6677875555
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Q 018509 124 LSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIAR 203 (355)
Q Consensus 124 Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sR 203 (355)
++ ++ .+.|..+..+.++|+.+++..|.+. + + .+ ..+|. +.+++.++++.|.+..|
T Consensus 114 l~----~~--~~~~~~~~~i~~~Gv~li~~~~~~~------~---~-------~~--~~G~l-l~l~aa~~~a~~~v~~r 168 (293)
T PRK10532 114 FS----SR--RPVDFVWVVLAVLGLWFLLPLGQDV------S---H-------VD--LTGAA-LALGAGACWAIYILSGQ 168 (293)
T ss_pred Hh----cC--ChHHHHHHHHHHHHHheeeecCCCc------c---c-------CC--hHHHH-HHHHHHHHHHHHHHHHH
Confidence 43 23 3566778888888887765222110 0 0 00 13554 88999999999999999
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhcccccC
Q 018509 204 RVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHMVFSS 282 (355)
Q Consensus 204 r~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~~ss 282 (355)
|...+.. +. ..++...++++++.|++.+... ....+ ...|.. +++.+++.++.|+.++.+.+|.++.+.+
T Consensus 169 ~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~---~~~~~----~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as 239 (293)
T PRK10532 169 RAGAEHG-PA-TVAIGSLIAALIFVPIGALQAG---EALWH----WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFG 239 (293)
T ss_pred HHhccCC-ch-HHHHHHHHHHHHHHHHHHHccC---cccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHH
Confidence 9976653 33 3467778888899998876431 11111 334655 8999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCC
Q 018509 283 PRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHG 329 (355)
Q Consensus 283 ~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~ 329 (355)
...++.|.++++...++++|.++..+ ++++.+++.|+...+..+|+
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~-~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQ-WLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999 88998888888877765544
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.70 E-value=3.9e-15 Score=142.41 Aligned_cols=257 Identities=14% Similarity=0.116 Sum_probs=179.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhccccc-chhhHHH-hhhhhhHH
Q 018509 45 QTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSC-GPVRALL-AEYSGAVL 121 (355)
Q Consensus 45 ~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~c-GplrsiL-~e~s~~Vl 121 (355)
.+|..++.+||.++....+++ .++|. ..|...+..|+.+. .+..+.+.+++|. ++-++.+ ...+|..+
T Consensus 30 ~~p~~~~~~R~~~a~~~l~~~--~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~ 100 (299)
T PRK11453 30 MPPLMLAGLRFMLVAFPAIFF--VARPK-------VPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFT 100 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--hcCCC-------CchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHH
Confidence 478999999998865443332 22221 22345555566554 5666888999985 3345554 88999988
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 018509 122 GVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVI 201 (355)
Q Consensus 122 ~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~ 201 (355)
.+++.++++|+.+.++..|.++.++|+++++.++. ++ ...+. .+|. +.+++.++++.|.+.
T Consensus 101 ~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~-------------~~---~~~~~--~G~~-l~l~aal~~a~~~v~ 161 (299)
T PRK11453 101 IVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL-------------NG---QHVAM--LGFM-LTLAAAFSWACGNIF 161 (299)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC-------------CC---cchhH--HHHH-HHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988861111 00 00112 3555 889999999999999
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCC--CC-CcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhc
Q 018509 202 ARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSS--SS-VDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLH 277 (355)
Q Consensus 202 sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~--~s-~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~ 277 (355)
.||+..+...+.-+ .+....+++...|+............ +. .......|.. ++..++++++.|+.++.+.+|++
T Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~ 240 (299)
T PRK11453 162 NKKIMSHSTRPAVM-SLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYE 240 (299)
T ss_pred HHHHhcccCccchh-HHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99987654333222 22222222223344332221111110 00 0011234555 99999999999999999999999
Q ss_pred ccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCCCC
Q 018509 278 MVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHGRK 331 (355)
Q Consensus 278 ~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~~~ 331 (355)
+.+.+.-..++|+++++...++++|.++..+ .+|+.++..|++......|.||
T Consensus 241 a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~-~iG~~lI~~gv~l~~~~~~~~~ 293 (299)
T PRK11453 241 TWRVAPLSLLVPVVGLASAALLLDERLTGLQ-FLGAVLIMAGLYINVFGLRWRK 293 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHhcchhhhc
Confidence 9999999999999999999999999999999 9999999999998766555444
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.65 E-value=2.3e-14 Score=137.02 Aligned_cols=256 Identities=9% Similarity=-0.012 Sum_probs=178.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhccccc----chhhHHH-hhhhhhH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSC----GPVRALL-AEYSGAV 120 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~c----GplrsiL-~e~s~~V 120 (355)
+|..++.+||..+.+..+++. ++|. .+++.|+.++.-++..+.++.+.+.|++|. .+.++.+ ...+|..
T Consensus 31 ~P~~~~~~R~~~a~l~l~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~ 104 (295)
T PRK11689 31 GPVGGAAMIYSVSGLLLLLTV--GFPR----LRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSL 104 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHc--cccc----cccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHH
Confidence 789999999988877665442 2222 233333444443444448888888888763 4556666 8889998
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 018509 121 LGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRV 200 (355)
Q Consensus 121 l~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~ 200 (355)
..+++.++.+||.+++|..|.++.++|+++++.++- + .+.++. +.....-..+|. +.++|.++++.|.+
T Consensus 105 ~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~------~---~~~~~~-~~~~~~~~~G~~-~~l~aa~~~A~~~v 173 (295)
T PRK11689 105 TILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN------G---LSLAEL-INNIASNPLSYG-LAFIGAFIWAAYCN 173 (295)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc------c---chhhhh-hhccccChHHHH-HHHHHHHHHHHHHH
Confidence 888999999999999999999999999988862210 0 000000 000000013555 89999999999999
Q ss_pred HhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhccc
Q 018509 201 IARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHMV 279 (355)
Q Consensus 201 ~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~ 279 (355)
..||+..+.+ +. + +....+.+++.+....+. ....+ .....|.. ++.. ++.++.|+.++.+.+|.++.
T Consensus 174 ~~k~~~~~~~-~~--~-~~~~~~~~~l~~~~~~~~----~~~~~--~~~~~~~~l~~~~-~~t~~~~~l~~~al~~~~a~ 242 (295)
T PRK11689 174 VTRKYARGKN-GI--T-LFFILTALALWIKYFLSP----QPAMV--FSLPAIIKLLLAA-AAMGFGYAAWNVGILHGNMT 242 (295)
T ss_pred HHhhccCCCC-ch--h-HHHHHHHHHHHHHHHHhc----Ccccc--CCHHHHHHHHHHH-HHHHHHHHHHHHHHHccCHH
Confidence 9999976653 32 2 223334444444333321 11111 12345666 6555 57899999999999999999
Q ss_pred ccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCCC
Q 018509 280 FSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHGR 330 (355)
Q Consensus 280 ~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~~ 330 (355)
+.+...++.|.++++...++++|+++..+ .++++++..|+......+|.|
T Consensus 243 ~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~-~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 243 LLATASYFTPVLSAALAALLLSTPLSFSF-WQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHhHHHHhhhHhHh
Confidence 99999999999999999999999999999 999999999998777655543
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.61 E-value=1.2e-13 Score=132.25 Aligned_cols=255 Identities=12% Similarity=0.090 Sum_probs=174.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhcCCC-CCC-CC-cccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhH
Q 018509 45 QTGVSVILFIFCCLVPSSILFLLLQKPW-KGR-PL-LNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAV 120 (355)
Q Consensus 45 ~~p~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~-~l-~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~V 120 (355)
.+|..++.+|+.++.+..+.+...++++ ..+ .. +++++...+.-++..+++..+++.|+++.++-++.+ .-.+|..
T Consensus 33 ~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~ 112 (296)
T PRK15430 33 VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLV 112 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3778899999999888777776666544 111 11 222332233333444489999999999999999988 8889999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 018509 121 LGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRV 200 (355)
Q Consensus 121 l~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~ 200 (355)
..+++.++.+|+.+.+|..|.++.++|+++++. | ++ -.+ ++.+++.++++.|.+
T Consensus 113 v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~---------~----~~------------~~~-~~~l~aa~~~a~~~i 166 (296)
T PRK15430 113 NIVLGMIFLGERFRRMQWLAVILAICGVLVQLW---------T----FG------------SLP-IIALGLAFSFAFYGL 166 (296)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH---------H----cC------------Ccc-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999861 1 11 112 367788999999999
Q ss_pred Hhhhhhhhcc-cchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 018509 201 IARRVSLKIT-LKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEERLHMV 279 (355)
Q Consensus 201 ~sRr~s~~~g-g~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~ 279 (355)
..||...+.. +.-....+...+++..+++.. + ....... ......|..++.......+.|+..+.+.+|+++.
T Consensus 167 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~ 240 (296)
T PRK15430 167 VRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA--D---SSTSHMG-QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLS 240 (296)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc--c---CCccccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 9988753221 111112223333333322211 0 0000001 0012234443333335678999999999999999
Q ss_pred ccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHH--hhhhhcccccCCCCCC
Q 018509 280 FSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLIL--GFGIYEATSLDHGRKD 332 (355)
Q Consensus 280 ~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll--~~gv~~~t~~~~~~~~ 332 (355)
+.|...++.|.++++...++++|.+++.+ ++++.++ ..++...+.....|||
T Consensus 241 ~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~-~~G~~lI~~~~~v~~~~~~~~~~~~ 294 (296)
T PRK15430 241 TLGFFQYIGPTLMFLLAVTFYGEKPGADK-MVTFAFIWVALAIFVMDAIYTQRRK 294 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999 8888777 5556666655555554
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.57 E-value=1.2e-12 Score=129.15 Aligned_cols=254 Identities=8% Similarity=0.036 Sum_probs=187.7
Q ss_pred C-CchhhHHHHHHHHHHHHHHHHhc-CCCCCCCC--cccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhH
Q 018509 46 T-GVSVILFIFCCLVPSSILFLLLQ-KPWKGRPL--LNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAV 120 (355)
Q Consensus 46 ~-p~~lv~f~Fl~~l~ss~~~l~~q-kP~~g~~l--~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~V 120 (355)
+ |..++.++|+++.....++..+. +| .+++ .++.|++++..|++++..+..-+.|+++..+-.+.+ -..+|+.
T Consensus 76 ~~P~~l~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvf 153 (350)
T PTZ00343 76 PLPWTISSLQLFVGWLFALLYWATGFRK--IPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVF 153 (350)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHH
Confidence 5 89999999999876555544332 22 1223 355788999999999866666779999999988777 8899999
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHH
Q 018509 121 LGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRV 200 (355)
Q Consensus 121 l~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~ 200 (355)
+.+++.++++|+.+.++..+.+..+.|+.+... ....++ . .+++ ..++|.++++.|.+
T Consensus 154 t~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~------~~~~~~-------------~--~G~~-~~l~s~~~~a~~~i 211 (350)
T PTZ00343 154 TALLSILFLKQFLNLYAYLSLIPIVGGVALASV------KELHFT-------------W--LAFW-CAMLSNLGSSLRSI 211 (350)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHheec------ccchhH-------------H--HHHH-HHHHHHHHHHHHHH
Confidence 999999999999998998888888888888640 111111 1 2444 88889999999999
Q ss_pred Hhhhhhhhcc------cchhHHHHHHHHHHHHHhHHHH-HHhhh--ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 018509 201 IARRVSLKIT------LKRRLHAITITSATCFLFPVAM-WDLII--GSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAM 271 (355)
Q Consensus 201 ~sRr~s~~~g------g~kRL~Alt~l~stv~L~P~al-~~~~~--~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi 271 (355)
..||.+.+.+ .+.-+..+..++++++++|++. .|... ..............|..+...++...+.||.+|.
T Consensus 212 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~ 291 (350)
T PTZ00343 212 FAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNE 291 (350)
T ss_pred HHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999986542 2333566668899999999987 43210 0000000000011122322245667889999995
Q ss_pred ----HhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 272 ----AEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 272 ----~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
+.+|+++...+...++-|.+.+++..++++|++|+.+ ++|+++.+.|++.-+
T Consensus 292 ~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~-~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 292 VAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG-YLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh-HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 999999999997544
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.55 E-value=1.6e-12 Score=123.17 Aligned_cols=221 Identities=12% Similarity=0.006 Sum_probs=159.2
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcc
Q 018509 77 LLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQG 155 (355)
Q Consensus 77 l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~g 155 (355)
.+++.|...+.-++.+..++.+.++|+++.+.-++.. ...+|....+++.+++||+.++++..|..+.+.|++.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~--- 134 (281)
T TIGR03340 58 LPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG--- 134 (281)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 3444444445544556699999999999998888777 777788999999999999999999999999999999875
Q ss_pred cccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHH-hHHHHHH
Q 018509 156 WATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFL-FPVAMWD 234 (355)
Q Consensus 156 w~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L-~P~al~~ 234 (355)
..|.++ .+. .++. +.+++.++++.|.+..||...+. ++..........+.++. .|+..+.
T Consensus 135 ----------~~~~~~-----~~~--~g~~-~~l~aal~~a~~~i~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (281)
T TIGR03340 135 ----------LSRFAQ-----HRR--KAYA-WALAAALGTAIYSLSDKAAALGV-PAFYSALGYLGIGFLAMGWPFLLLY 195 (281)
T ss_pred ----------cccccc-----cch--hHHH-HHHHHHHHHHHhhhhccccccch-hcccccHHHHHHHHHHHHHHHHHHH
Confidence 111100 011 2333 67888899999999999875433 22111111122333333 4555543
Q ss_pred hhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHH
Q 018509 235 LIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSL 314 (355)
Q Consensus 235 ~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ 314 (355)
....+..... .....|..++.+.+..++.|+..+.+.++.++.+.+...++.|.+.++...++++|+++..+ .+|+.
T Consensus 196 ~~~~~~~~~~--~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~-~iG~~ 272 (281)
T TIGR03340 196 LKRHGRSMFP--YARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTR-LMGVC 272 (281)
T ss_pred HHHhccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHH-HHHHH
Confidence 3222111111 11233444888889999999999999999999999999999999999999999999999999 99999
Q ss_pred HHhhhhhc
Q 018509 315 ILGFGIYE 322 (355)
Q Consensus 315 ll~~gv~~ 322 (355)
++..|+..
T Consensus 273 lil~Gv~l 280 (281)
T TIGR03340 273 IIVAGLVV 280 (281)
T ss_pred HHHHhHHh
Confidence 99999864
No 11
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.43 E-value=5.2e-11 Score=111.01 Aligned_cols=220 Identities=13% Similarity=0.137 Sum_probs=157.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHhcCCCC-----CCCCcccc-hhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhh
Q 018509 45 QTGVSVILFIFCCLVPSSILFLLLQKPWK-----GRPLLNTQ-MVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYS 117 (355)
Q Consensus 45 ~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~-----g~~l~~~Q-w~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s 117 (355)
.+|..++++|++++.+..+++...+++++ -++.++++ +..+..-|+..++...+++.|+++.++.++.. .-.+
T Consensus 27 ~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~ 106 (256)
T TIGR00688 27 LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLIN 106 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 47799999999998877666665554321 11233444 34456667777799999999999999998888 8889
Q ss_pred hhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHH
Q 018509 118 GAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSAL 197 (355)
Q Consensus 118 ~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~ 197 (355)
|....+++.+++|||.+.+|..|.++.+.|+.++.- | +.|. ..+.+++.++++.
T Consensus 107 Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~---------~----~~~~-------------~~~~l~aa~~~a~ 160 (256)
T TIGR00688 107 PLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV---------L----KGSL-------------PWEALVLAFSFTA 160 (256)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---------H----cCCc-------------hHHHHHHHHHHHH
Confidence 999999999999999999999999999999988751 1 0100 1256789999999
Q ss_pred HHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 018509 198 RRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERL 276 (355)
Q Consensus 198 ~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl 276 (355)
|.+..||...+. ......++..+.|.+.......+........+...|.. +...++ .++.|+..+.+.+++
T Consensus 161 ~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~ 232 (256)
T TIGR00688 161 YGLIRKALKNTD-------LAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRL 232 (256)
T ss_pred HHHHHhhcCCCC-------cchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence 999999975321 22344455566666654432221111010012234666 666655 788999999999999
Q ss_pred cccccCcchhhhhHHHHHHHHH
Q 018509 277 HMVFSSPRHLMVAGGCIIVMEM 298 (355)
Q Consensus 277 ~~~~ss~r~~lV~~~c~iv~e~ 298 (355)
++++.++..++.|.++++...+
T Consensus 233 ~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 233 PLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.38 E-value=5.4e-10 Score=102.56 Aligned_cols=244 Identities=17% Similarity=0.131 Sum_probs=170.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHH-
Q 018509 50 VILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSA- 126 (355)
Q Consensus 50 lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~- 126 (355)
...+++.+.... .....+++...+...++.+.....-++++. .+..+|+.++++.++-.+.+ ...+|....+++.
T Consensus 39 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 116 (292)
T COG0697 39 AAALRFLIAALL--LLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVL 116 (292)
T ss_pred HHHHHHHHHHHH--HHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333466666666 222233222122223333444444455544 89999999999999998888 9999998888886
Q ss_pred HHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhh
Q 018509 127 VLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVS 206 (355)
Q Consensus 127 lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s 206 (355)
++++|+.+..+..|.++.++|++.+. ..++.+... ...++. +.+++.++++.+.+..|++.
T Consensus 117 ~~~~e~~~~~~~~~~~~~~~Gv~lv~-------------~~~~~~~~~-----~~~g~~-~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 117 LLLGERLSLLQILGILLALAGVLLIL-------------LGGGGGGIL-----SLLGLL-LALAAALLWALYTALVKRLS 177 (292)
T ss_pred HHccCCCcHHHHHHHHHHHHhHHhee-------------cCCCcchhH-----HHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 66799999999999888899999886 222211100 113444 88999999999999999987
Q ss_pred hhcccchhHHH-HHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q 018509 207 LKITLKRRLHA-ITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHMVFSSPR 284 (355)
Q Consensus 207 ~~~gg~kRL~A-lt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~~ss~r 284 (355)
+. ++-.... +.......+..|+...+.. ...+ ...|.. ....+++..+.|+.+..+.++.+....++.
T Consensus 178 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (292)
T COG0697 178 -RL-GPVTLALLLQLLLALLLLLLFFLSGFG----APIL----SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALL 247 (292)
T ss_pred -CC-ChHHHHHHHHHHHHHHHHHHHHhcccc----ccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 33 3333333 2333223333333332211 1122 344555 888888888999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Q 018509 285 HLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATS 325 (355)
Q Consensus 285 ~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~ 325 (355)
....|+.+++...++++|.++..+ .+++.++..|+.....
T Consensus 248 ~~~~~v~~~~~~~l~~~e~~~~~~-~~G~~li~~g~~l~~~ 287 (292)
T COG0697 248 SLLEPVFAALLGVLLLGEPLSPAQ-LLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 8999999999987664
No 13
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.03 E-value=4.8e-08 Score=94.10 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=180.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHHhhhh-hhHHHHHH
Q 018509 47 GVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALLAEYS-GAVLGVLS 125 (355)
Q Consensus 47 p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL~e~s-~~Vl~~Ls 125 (355)
|..+++.-+.+....+.......+ .++.++..+++.+..++..++...+-..+|+|.+..--+++..+ +.-..+++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~ 108 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILG 108 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence 345555555565555665555555 35567788889999999999999999999999887766664444 44555778
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhh--hhccchhHHHHHHHHHHHHHHHHhh
Q 018509 126 AVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQ--VLGMKEMVVPLLAGILSALRRVIAR 203 (355)
Q Consensus 126 ~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~--~lG~~Dv~Lli~a~~l~a~~~~~sR 203 (355)
.+++|++-+.+|..+.++..+|+...- +.|.++..+..++ .-..|+ .+++++.++.+...+...
T Consensus 109 ~l~~~k~y~~~~~~~v~li~~Gv~~~~-------------~~~~~~~~~~~~~~~~~~~G~-~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 109 VLILGKRYSRRQYLSVLLITIGVAIFT-------------LSDSSSSSSSNSSSFSSALGI-ILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhcCccccHHHHHHHHHHHhhHheee-------------ecccccccccccccccchhHH-HHHHHHHHHHHHHHHHHH
Confidence 889999888888888888888888775 4443322222111 111144 489999999999999999
Q ss_pred hhhhhcc-cchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCC---CcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 018509 204 RVSLKIT-LKRRLHAITITSATCFLFPVAMWDLIIGSKSSSS---VDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHM 278 (355)
Q Consensus 204 r~s~~~g-g~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s---~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~ 278 (355)
|...+++ .+..+--++++.+.+++++....-. .++..+.. ..++. .|.. +..++.+.+..+++ ..+.++-++
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~~~~f~~~~p~-~~~~l~~~s~~~~~g~~~i-~~~~~~~~a 251 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRSAIRFISAHPS-VLLYLLLFSLTGALGQFFI-FYLIKKFSA 251 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH-HHHHHhcCc
Confidence 9998887 6667778899999998888777621 11111110 01122 2333 44444555545444 456777777
Q ss_pred cccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCC
Q 018509 279 VFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHG 329 (355)
Q Consensus 279 ~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~ 329 (355)
...+.-..+=-++++++...+++.++|..+ .+|.+++..|...-...+++
T Consensus 252 l~~t~v~t~Rk~~sillS~~~f~~~~~~~~-~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 252 LTTTIVTTLRKFLSILLSVIIFGHPLSPLQ-WIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCcCChHH-HHHHHHhHHHHHHHHHhhcc
Confidence 666665555568888899999999999999 99999999998865543333
No 14
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.88 E-value=4.3e-07 Score=87.35 Aligned_cols=253 Identities=17% Similarity=0.171 Sum_probs=184.6
Q ss_pred HHHHHHhHhhhhcc--CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchh
Q 018509 32 RIWSVYSMYRYLSQ--TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPV 109 (355)
Q Consensus 32 r~~~i~~~y~~l~~--~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGpl 109 (355)
...++|.--.+-|+ |-+--..-.++=....+.+++.+-||| .+.++++||..++..|+..+.-|++|+.+++-. |+
T Consensus 20 amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPw-r~r~~~~~~~~~~~yGvsLg~MNl~FY~si~ri-Pl 97 (292)
T COG5006 20 AMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPW-RRRLSKPQRLALLAYGVSLGGMNLLFYLSIERI-PL 97 (292)
T ss_pred HHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHH-HhccChhhhHHHHHHHHHHHHHHHHHHHHHHhc-cc
Confidence 45566666666655 112222334455566788999999999 899999999999999999999999999999987 88
Q ss_pred hHHH-hhhhhh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccch---
Q 018509 110 RALL-AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKE--- 184 (355)
Q Consensus 110 rsiL-~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~D--- 184 (355)
.... -|..+- ..+.+ .+| +.+...=..+++.|..+++ |.. + -.+.-|
T Consensus 98 GiAVAiEF~GPL~vA~~----~sR--r~~d~vwvaLAvlGi~lL~----------p~~---~---------~~~~lDp~G 149 (292)
T COG5006 98 GIAVAIEFTGPLAVALL----SSR--RLRDFVWVALAVLGIWLLL----------PLG---Q---------SVWSLDPVG 149 (292)
T ss_pred hhhhhhhhccHHHHHHH----hcc--chhhHHHHHHHHHHHHhhe----------ecc---C---------CcCcCCHHH
Confidence 7777 888776 44443 232 2233344566777777776 322 1 112233
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchh-HHHHH-HHHHHHHH
Q 018509 185 MVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPF-SAWAF-LSTTLFGI 262 (355)
Q Consensus 185 v~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~-~~w~~-l~~~vF~~ 262 (355)
+..-+.++.||+.|=+.++|.... +...+-.|+.+++++++-+|+..-+. ..+ ++. +.... +-+.+...
T Consensus 150 v~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~a-----g~~---l~~p~ll~laLgvavlSS 220 (292)
T COG5006 150 VALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQA-----GPA---LFSPSLLPLALGVAVLSS 220 (292)
T ss_pred HHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhc-----chh---hcChHHHHHHHHHHHHhc
Confidence 447889999999999999999853 35678899999999999999998443 211 122 22333 88889999
Q ss_pred HHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 263 ILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 263 VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
++-|-.|.++-.|+....=+.--.+-|.+.++.=-.+++|.+|+.| .++=..++.++--.|
T Consensus 221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q-wlaI~~ViaAsaG~~ 281 (292)
T COG5006 221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ-WLAIAAVIAASAGST 281 (292)
T ss_pred ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhccc
Confidence 9999999999988876544444556788899988899999999999 777777777776444
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.67 E-value=6.8e-06 Score=81.83 Aligned_cols=253 Identities=15% Similarity=0.084 Sum_probs=153.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHH
Q 018509 48 VSVILFIFCCLVPSSILFLLLQKPW-KGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLS 125 (355)
Q Consensus 48 ~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls 125 (355)
..-..+-+......-......|+.. +-.+..++.|-+.+..|++-+.-+.++..|++|+.-.-.-| .-.+-....++|
T Consensus 44 ~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS 123 (334)
T PF06027_consen 44 TFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILS 123 (334)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHH
Confidence 3333344444333334445555444 22233345555555569999999999999999998774444 555555777889
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHh--hhhhhhhccchhHHHHHHHHHHHHHHHHhh
Q 018509 126 AVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAE--LRTEQVLGMKEMVVPLLAGILSALRRVIAR 203 (355)
Q Consensus 126 ~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~--~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sR 203 (355)
.+++++|-+..|..|+++.+.|+.++. .=|.+... ....|-+ .+|+ +.+++-++.+.+.+.-+
T Consensus 124 ~~fL~~ry~~~~~~gv~i~i~Gv~lv~-------------~sD~~~~~~~~~~~~~i-~GDl-l~l~~a~lya~~nV~~E 188 (334)
T PF06027_consen 124 FIFLKRRYSWFHILGVLICIAGVVLVV-------------VSDVLSGSDSSSGSNPI-LGDL-LALLGAILYAVSNVLEE 188 (334)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhee-------------eecccccccCCCCCccc-hhHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988886 33421111 1112333 7887 77999999999999988
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhH-HHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q 018509 204 RVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFS-AWAFLSTTLFGIILIFYVDAMAEERLHMVFSS 282 (355)
Q Consensus 204 r~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~-~w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss 282 (355)
+..++. ...-.-+.--++++++..|.... .+-++-....|.. .+.++..-...+.+.|+...+..+.-++..-.
T Consensus 189 ~~v~~~-~~~~~lg~~Glfg~ii~~iq~~i----le~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~n 263 (334)
T PF06027_consen 189 KLVKKA-PRVEFLGMLGLFGFIISGIQLAI----LERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFN 263 (334)
T ss_pred HhcccC-CHHHHHHHHHHHHHHHHHHHHHh----eehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceee
Confidence 887665 44445555566777776654432 2222211111221 12221111223445555555554443333222
Q ss_pred cchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 018509 283 PRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 283 ~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~ 321 (355)
.-...-.+.+.++--++++++++..- .++-+++++|+.
T Consensus 264 LsLLTsd~~ali~~i~~f~~~~~~ly-~~af~lIiiG~v 301 (334)
T PF06027_consen 264 LSLLTSDFYALIIDIFFFGYKFSWLY-ILAFALIIIGFV 301 (334)
T ss_pred hHHHHhhHHHHHHHHHhcCccccHHH-HHHHHHHHHHhh
Confidence 21222236666777778999999987 788777777765
No 16
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.37 E-value=2e-06 Score=69.54 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=92.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHH-HHHHHHHHhcccccchhhHHH-hhhhhhHHHH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGIT-ALYFILWGKGLKSCGPVRALL-AEYSGAVLGV 123 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~-~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~ 123 (355)
+|...+.+++.+..+ .+++..++++...+..++++|...+..|+++ ++...+|+.|+++.+|-++.. ...+|....+
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i 96 (126)
T PF00892_consen 18 SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAI 96 (126)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 667888888888887 6777777776634788889999999999995 699999999999999998888 7788888888
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 124 LSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 124 Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
++.++++|+.+++|..|.++.+.|++++.
T Consensus 97 ~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 97 LGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.30 E-value=0.00013 Score=70.54 Aligned_cols=215 Identities=9% Similarity=0.055 Sum_probs=147.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hh-hhhhHHHHHHHHHhCCCCCcch----hhHHHHHHHHHHHHhh
Q 018509 80 TQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AE-YSGAVLGVLSAVLYGRRGHVWK----KVGGLIAILASFYFLS 153 (355)
Q Consensus 80 ~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e-~s~~Vl~~Ls~lf~g~~~~~~k----~rG~~l~~igvl~lLs 153 (355)
+.|..-+.-|+.=+.-+++++.+.++.|--.+.+ .. .++++..+.+.++++|+.++++ ..|.++.++|++++-
T Consensus 57 ~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~- 135 (290)
T TIGR00776 57 SIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS- 135 (290)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE-
Confidence 3333333334444466799999999999998877 55 6666677789999999988888 888888888877663
Q ss_pred cccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccchhH---HHHHHHHHHHHHhHH
Q 018509 154 QGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKITLKRRL---HAITITSATCFLFPV 230 (355)
Q Consensus 154 ~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL---~Alt~l~stv~L~P~ 230 (355)
.-+.++..++.+... ..-+..-++++++.+.|-...|+.. + ++.-. +++...++..+++++
T Consensus 136 ------------~~~~~~~~~~~~~~~-~~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~ 199 (290)
T TIGR00776 136 ------------RSKDKSAGIKSEFNF-KKGILLLLMSTIGYLVYVVVAKAFG--V-DGLSVLLPQAIGMVIGGIIFNLG 199 (290)
T ss_pred ------------eccccccccccccch-hhHHHHHHHHHHHHHHHHHHHHHcC--C-CcceehhHHHHHHHHHHHHHHHH
Confidence 111111111110111 2236688889999999999999873 3 56666 777777666655554
Q ss_pred HHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccccCcchhhhhHHHHHHHHHHhccccchHHH
Q 018509 231 AMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEE-RLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGF 309 (355)
Q Consensus 231 al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi~~~-rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~ 309 (355)
.. ..++. .....|..+...++ ..+.|.....+.+ +++..+++.--..-|..+++...++++|..+..+
T Consensus 200 ~~------~~~~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~- 268 (290)
T TIGR00776 200 HI------LAKPL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE- 268 (290)
T ss_pred Hh------cccch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce-
Confidence 31 00111 12344544335555 4666666666667 8999999999999999999999999999999999
Q ss_pred H----HHHHHHhhhhhc
Q 018509 310 I----ICSLILGFGIYE 322 (355)
Q Consensus 310 l----ic~~ll~~gv~~ 322 (355)
+ ++..+++.|+..
T Consensus 269 ~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 269 MIAISVGIILIIIAANI 285 (290)
T ss_pred eehhHHHHHHHHHHHHH
Confidence 6 788887777754
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.08 E-value=0.00087 Score=65.75 Aligned_cols=251 Identities=16% Similarity=0.184 Sum_probs=169.6
Q ss_pred HHHHHhHhh-hhcc-CCchhhHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhHHHHHHHHHHHHHHHH---hccccc
Q 018509 33 IWSVYSMYR-YLSQ-TGVSVILFIFCCLVPSSILFLLLQKPW-KGRPLLNTQMVPSVINGGITALYFILWG---KGLKSC 106 (355)
Q Consensus 33 ~~~i~~~y~-~l~~-~p~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~~l~~~Qw~~il~~gvv~~l~~lLwf---~gL~~c 106 (355)
.||..-.|- +++. ++.-+...|-+-..+..+..+..-|.| ..+. ..+|.+.++...+.+.++..=|. .+...=
T Consensus 18 lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~-~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g 96 (293)
T COG2962 18 LWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ-LLKQPKTLLMLALTALLIGLNWWLFIWAVNNG 96 (293)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHhheecCCC
Confidence 455544443 3433 556666677777777777777766776 2333 34566666666666665554444 777777
Q ss_pred chhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchh
Q 018509 107 GPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEM 185 (355)
Q Consensus 107 GplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv 185 (355)
-.+.++| -=.||.+..++..+|+||+.++-|.+...++.+||.... |+ +++
T Consensus 97 ~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~---~~---------~g~---------------- 148 (293)
T COG2962 97 HVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT---WL---------LGS---------------- 148 (293)
T ss_pred chhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH---HH---------cCC----------------
Confidence 7788999 888999999999999999999999999999999999886 10 111
Q ss_pred HHHHHHHH--HH-HHHHHHhhhhh-hhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCC--CCcchhHHHHH-HHHH
Q 018509 186 VVPLLAGI--LS-ALRRVIARRVS-LKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSS--SVDLPFSAWAF-LSTT 258 (355)
Q Consensus 186 ~Lli~a~~--l~-a~~~~~sRr~s-~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~--s~~~~~~~w~~-l~~~ 258 (355)
+|..|.. ++ +.|. +.||.. .+. .-+.++-|..+.|+|+.-....+.+.. ..+.+...++. +.-.
T Consensus 149 -lpwval~la~sf~~Yg-l~RK~~~v~a-------~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~ 219 (293)
T COG2962 149 -LPWVALALALSFGLYG-LLRKKLKVDA-------LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL 219 (293)
T ss_pred -CcHHHHHHHHHHHHHH-HHHHhcCCch-------HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH
Confidence 2333332 22 3343 445543 322 346788999999999988777666652 10112333333 5555
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 259 LFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 259 vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
+.+.-+.-| ..+.+|+..+.-...-+.-|+.--++..++++|.|+..+ +++=..++.|+..-+
T Consensus 220 vTavpL~lf--~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~-~~~F~~IW~aL~l~~ 282 (293)
T COG2962 220 VTAVPLLLF--AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQ-LVTFAFIWLALALFS 282 (293)
T ss_pred HHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHHHH
Confidence 555555544 446777777777777788898888999999999999999 888888888876443
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.06 E-value=1.8e-05 Score=65.89 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCC--CCCCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHHhhhhhhHHHHHHHHH
Q 018509 52 LFIFCCLVPSSILFLLLQKPW--KGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALLAEYSGAVLGVLSAVL 128 (355)
Q Consensus 52 ~f~Fl~~l~ss~~~l~~qkP~--~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL~e~s~~Vl~~Ls~lf 128 (355)
.+|+.+..+....++..+|+. --+.+++++|...+.-|+++. ....+|+.|+++.++.-+.+.+.+|++..+++.++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPALVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887665 234566788888888889887 99999999999999644444999999999999999
Q ss_pred hCCCCCcchhhHHHHHHHHHHHHh
Q 018509 129 YGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 129 ~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
++|+.++++..|.++.++|++.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIA 105 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 20
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.95 E-value=3.7e-05 Score=62.10 Aligned_cols=122 Identities=15% Similarity=0.051 Sum_probs=98.3
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHH
Q 018509 193 ILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAM 271 (355)
Q Consensus 193 ~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi 271 (355)
++|+.+.+..|+...+. ++....++...++.+ +++...+..... .... ....|.. +...+++..+.++..+.
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP-FKNL----SPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC----ChhhhhhhhHhhccceehHHHHHHH
Confidence 36778888889888886 788899999999987 666665544322 1111 1333444 77777778999999999
Q ss_pred HhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 272 AEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 272 ~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
+.++.+..+.+...++.|.+.++....+++|+++..+ .+|..+...|+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~-~~g~~l~~~g~~l 123 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQ-IIGIILIIIGVVL 123 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999998864
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.73 E-value=0.00081 Score=63.95 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHH
Q 018509 185 MVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIIL 264 (355)
Q Consensus 185 v~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL 264 (355)
..+++++.++++.++...||...+. .. ...+....+++++.|++.+...-..-... ....|........+...
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PD--FLWWALLAHSVLLTPYGLWYLAQVGWSRL----PATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhcccCCCCCc----chhhHHHHHHHHHHHHH
Confidence 3589999999999999999887653 11 34566677888999998874211111111 12334445556666778
Q ss_pred HHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 265 IFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 265 ~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
.++.-..+.++.+....++.....|.+.++..-.+++|+++..+ .+|..+...|+....
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~-~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA-WLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999999999999 889999999988654
No 22
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.32 E-value=0.005 Score=53.60 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHH
Q 018509 185 MVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIIL 264 (355)
Q Consensus 185 v~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL 264 (355)
..+.+++.++.+.-+..-|+-+.+.|...--. . .+.....+ ...+..++..++..++
T Consensus 4 ~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~------~-~~~~~~~~----------------~~p~~~i~lgl~~~~l 60 (129)
T PRK02971 4 YLWGLASVLLASVAQLSLKWGMSRLPLLSHAW------D-FIAALLAF----------------GLALRAVLLGLAGYAL 60 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCccchh------H-HHHHHHHH----------------hccHHHHHHHHHHHHH
Confidence 34677788888888888887776654211000 0 00000000 0012237778889999
Q ss_pred HHHHHHHHhhhhcccccCcchhhhhHHHHHHHHH--HhccccchHHHHHHHHHHhhhhhcccc
Q 018509 265 IFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEM--VYKMDFSLIGFIICSLILGFGIYEATS 325 (355)
Q Consensus 265 ~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~--~~~~~~sl~g~lic~~ll~~gv~~~t~ 325 (355)
.|+.++.+-+|++.+.+.+....++....+.... +++|++|+.+ .+|.++++.||...+.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~-~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK-TLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999988887666555554 8999999999 9999999999998765
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.30 E-value=0.0051 Score=56.79 Aligned_cols=94 Identities=23% Similarity=0.267 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhC
Q 018509 53 FIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYG 130 (355)
Q Consensus 53 f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g 130 (355)
..+.+..+...++....++. .....++|..++..|+++. +-..+|++++++.||-++.. ....|.+..+++.++++
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~ 241 (260)
T TIGR00950 164 WVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILG 241 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566655555555555444 2346678888888888875 78889999999999999999 88888888899999999
Q ss_pred CCCCcchhhHHHHHHHHH
Q 018509 131 RRGHVWKKVGGLIAILAS 148 (355)
Q Consensus 131 ~~~~~~k~rG~~l~~igv 148 (355)
|+.++.+..|..+.+.|+
T Consensus 242 E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 242 ETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988876
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.04 E-value=0.0065 Score=60.45 Aligned_cols=248 Identities=13% Similarity=0.108 Sum_probs=154.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHH
Q 018509 47 GVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLS 125 (355)
Q Consensus 47 p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls 125 (355)
|..++.+.+.|...+..+.-.+.-+..-+..++.+|..++-.|++-++-+++-..++++-.--=.-. -+..|..+.+++
T Consensus 48 p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~ 127 (316)
T KOG1441|consen 48 PITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLS 127 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHH
Confidence 3556666555555555555444444423334679999999999999999999999999984332223 777888888899
Q ss_pred HHHhCCCCCcchhhHHHHHHHHHHHHhhcc--cccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Q 018509 126 AVLYGRRGHVWKKVGGLIAILASFYFLSQG--WATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIAR 203 (355)
Q Consensus 126 ~lf~g~~~~~~k~rG~~l~~igvl~lLs~g--w~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sR 203 (355)
.++.+++-+.+. - ..++.++-| -+..+..+|| ..-++.-+++.+..+.+...++
T Consensus 128 ~~~~~~~~s~~~-~-------lsL~piv~GV~ias~~e~~fn----------------~~G~i~a~~s~~~~al~~I~~~ 183 (316)
T KOG1441|consen 128 VLLLGKTYSSMT-Y-------LSLLPIVFGVAIASVTELSFN----------------LFGFISAMISNLAFALRNILSK 183 (316)
T ss_pred HHHhCCCCcceE-E-------EEEEEeeeeEEEeeecccccc----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999998755443 3 223334444 3445666666 3335578899999999999999
Q ss_pred hhhhh---cccchhHHHHHHHHHHHHHh-HHHHHHhhhcc----CCCCCCcchhHHHHHHHHHHHHHHHHHHHHH---HH
Q 018509 204 RVSLK---ITLKRRLHAITITSATCFLF-PVAMWDLIIGS----KSSSSVDLPFSAWAFLSTTLFGIILIFYVDA---MA 272 (355)
Q Consensus 204 r~s~~---~gg~kRL~Alt~l~stv~L~-P~al~~~~~~~----~s~~s~~~~~~~w~~l~~~vF~~VL~fyves---i~ 272 (355)
++.++ ...+-.+-.+...++.++|+ ||...+....- ....+ ...+...... ++.|...- .+
T Consensus 184 ~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s----v~~f~~Nls~f~~ 255 (316)
T KOG1441|consen 184 KLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF----VTFLILLLNS----VLAFLLNLSAFLV 255 (316)
T ss_pred HhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccc----hhhHHHHHHH----HHHHHHHHHHHHH
Confidence 99842 33888999999999999999 88776543221 11111 1112111111 33333222 22
Q ss_pred hhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccC
Q 018509 273 EERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLD 327 (355)
Q Consensus 273 ~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~ 327 (355)
..|..+..=+.-..+=..+-+.+.-++.++..|..+ ..|.++=+.|+..=+..+
T Consensus 256 ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n-~~G~~iai~Gv~~Y~~~k 309 (316)
T KOG1441|consen 256 IGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN-ALGYAIAILGVFLYSRAK 309 (316)
T ss_pred HcccCchhhhhhccceEEEEEEeEeeeecCCCchhh-HHHHHHHHHHHHHHHHHh
Confidence 333333221111111112222333367788999999 999999999998666544
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.94 E-value=0.021 Score=48.67 Aligned_cols=134 Identities=15% Similarity=0.054 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh------cccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCC------cchhHHHH
Q 018509 186 VVPLLAGILSALRRVIARRVSLK------ITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSV------DLPFSAWA 253 (355)
Q Consensus 186 ~Lli~a~~l~a~~~~~sRr~s~~------~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~------~~~~~~w~ 253 (355)
++.++|.++.++|.+..++...+ ..++-.+..+....++++++|++...-.......... ......|.
T Consensus 3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 46789999999999999999877 3488889999999999999998765432221111100 00112233
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 018509 254 F-LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 254 ~-l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~ 321 (355)
. +...+++. +--+.+..+.++..+...+.-.++=....++....+++|++|..+ .+|.++...|+.
T Consensus 83 ~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~-~~G~~l~~~G~~ 149 (153)
T PF03151_consen 83 LLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ-IIGIVLALVGVL 149 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH-HHHHHHHHHHHh
Confidence 3 33333333 444677778888888877777777778888899999999999999 999998888875
No 26
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.80 E-value=0.026 Score=54.27 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=68.6
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 75 RPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 75 ~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
...+..+|..++..++.+++-..+|+.++|+.||.++.. .-..|++..+++.+++||..++.+..|+++.+.|+++..
T Consensus 208 ~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 208 MVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 345667898888888766688999999999999999999 778888888889999999999999999999999988774
No 27
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.66 E-value=0.047 Score=52.30 Aligned_cols=75 Identities=12% Similarity=-0.039 Sum_probs=67.2
Q ss_pred cccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 78 LNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 78 ~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
..+.|..++..|+++. +-..+|++++|+.+|-+..+ .-..|+...+++.++++|..++.+..|+++.+.|+++.-
T Consensus 208 ~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 208 TLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4467888899999876 88889999999999998888 888999999999999999999999999999999998874
No 28
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.62 E-value=0.021 Score=50.55 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=87.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHH
Q 018509 47 GVSVILFIFCCLVPSSILFLLLQKPW-KGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVL 124 (355)
Q Consensus 47 p~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~L 124 (355)
|..-+.-|=++.+.....++..+++| .+..+.++.|..++.-|+.+.+.-+++|.+++.=-+-+-+= ...+++...++
T Consensus 31 p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~ll 110 (140)
T COG2510 31 PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLL 110 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHH
Confidence 45555667777777788889999999 66679999999999999999999999999998755444443 77777788889
Q ss_pred HHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 125 SAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 125 s~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
|.+|+||+.+..+.+|.++..+|++.+
T Consensus 111 s~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 111 SILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 999999999999999999999988764
No 29
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.60 E-value=0.029 Score=56.31 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 85 SVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 85 il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
++..++...+...+|+++++.-||.++.+ .-..|++..+++++++||..++.+..|+++.+.|++...
T Consensus 259 i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 259 IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 55566655577789999999999999999 999999999999999999999999999999999998764
No 30
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.50 E-value=0.05 Score=55.52 Aligned_cols=226 Identities=16% Similarity=0.154 Sum_probs=147.1
Q ss_pred hHHHHHHHHHHHHHHHH-------hcccccchh-hHHHhhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcc
Q 018509 84 PSVINGGITALYFILWG-------KGLKSCGPV-RALLAEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQG 155 (355)
Q Consensus 84 ~il~~gvv~~l~~lLwf-------~gL~~cGpl-rsiL~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~g 155 (355)
.+.+.++.-| .+|| .+|.++.-- .++|...|+.-+-.+++.|-+|+.+.+|..+.++.+.|++..-.++
T Consensus 157 ~~ak~sl~fc---~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~ 233 (416)
T KOG2765|consen 157 QTAKLSLFFC---PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD 233 (416)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence 4455555444 5565 688888766 7788888888666778889999999999999999999999998777
Q ss_pred -cccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcc---cchhHHHHHHHHHHHHHhHHH
Q 018509 156 -WATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKIT---LKRRLHAITITSATCFLFPVA 231 (355)
Q Consensus 156 -w~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~g---g~kRL~Alt~l~stv~L~P~a 231 (355)
||.-+..|- +.+ +||+ +-+++-.+-++|-++.||-.-+.| .-+....+.-++..+++-|++
T Consensus 234 s~~~~~~~a~-------------~~l-lG~l-laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l 298 (416)
T KOG2765|consen 234 SKQNSDLPAS-------------RPL-LGNL-LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPL 298 (416)
T ss_pred ccccccCCcc-------------chh-HHHH-HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHH
Confidence 883222221 122 5666 667777888899999999987775 335566788888999999988
Q ss_pred HHHhhhccCCCCCCcchhHH-HHH-HHHHHHHHHHHHHHHHHHhhhhcccccCcc----hhhhhHHHHHHHHHHh-cccc
Q 018509 232 MWDLIIGSKSSSSVDLPFSA-WAF-LSTTLFGIILIFYVDAMAEERLHMVFSSPR----HLMVAGGCIIVMEMVY-KMDF 304 (355)
Q Consensus 232 l~~~~~~~~s~~s~~~~~~~-w~~-l~~~vF~~VL~fyvesi~~~rl~~~~ss~r----~~lV~~~c~iv~e~~~-~~~~ 304 (355)
......+ .+.-.++... ... +.....+.|+.=|.|..+ ..-+++- ..-+++--++++-.+. +-.+
T Consensus 299 ~iL~~~~---~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a-----~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~ 370 (416)
T KOG2765|consen 299 IILDFFG---EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKA-----VLLTSPLVVTLGMSLTIPLAMFADVLIKGKHP 370 (416)
T ss_pred HHHHHhc---cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHH-----HHhccchhheeeeeEeeeHHHHHHHHHcCCCC
Confidence 8877663 2221112111 111 333356666666666433 2222221 1112333455666666 7778
Q ss_pred chHHHHHHHHHHhhhhhcccccC-CCCCCCCCC
Q 018509 305 SLIGFIICSLILGFGIYEATSLD-HGRKDTFQK 336 (355)
Q Consensus 305 sl~g~lic~~ll~~gv~~~t~~~-~~~~~~~~~ 336 (355)
|++. .+|+..+..|-....... .++|+++.+
T Consensus 371 S~~~-iiGsi~Ifv~Fv~vn~~~~~~~~~~~~~ 402 (416)
T KOG2765|consen 371 SALY-IIGSIPIFVGFVIVNISSENSKKDPLMA 402 (416)
T ss_pred CHHH-HHHHHHHHHHHhheeccccccccccchh
Confidence 8887 999998888877555433 445544443
No 31
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.30 E-value=0.1 Score=50.06 Aligned_cols=75 Identities=12% Similarity=-0.074 Sum_probs=65.3
Q ss_pred cccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 78 LNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 78 ~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
+...|...+..|++++ +-..+|++++++.||-++.+ ....|.+..+++.+++||..++.+..|+.+.+.|++..-
T Consensus 204 ~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 204 HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3345666678899887 78889999999999999999 888888888899999999999999999999999988874
No 32
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.28 E-value=0.098 Score=50.30 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=68.9
Q ss_pred CCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 76 PLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 76 ~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
..+.++|..++..|++++ +-..+|+.+++..+|-++.. ....|.+..+++.+++||..+..+..|+++.+.|++...
T Consensus 208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 345578999999998888 78889999999999999888 989999999999999999999999999999999997654
No 33
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.08 E-value=0.08 Score=50.93 Aligned_cols=129 Identities=9% Similarity=-0.015 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccC--CCCCCcchhHHHHHHHHHHHHHHH
Q 018509 187 VPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSK--SSSSVDLPFSAWAFLSTTLFGIIL 264 (355)
Q Consensus 187 Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~--s~~s~~~~~~~w~~l~~~vF~~VL 264 (355)
..+++.++|+......|.. .+. ++.-+.++-.+++++++.|......-.... +..+ ...|.......++...
T Consensus 12 ~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 85 (296)
T PRK15430 12 LALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQT----PQKIFMLAVSAVLIGG 85 (296)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcC----HHHHHHHHHHHHHHHH
Confidence 7889999999999999754 344 788899999999999888876543110000 0001 1222223345566777
Q ss_pred HHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 265 IFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 265 ~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
.++....+.++.....++.-.+..|++.++...++++|+++..+ .++.++-..|+..
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~-~~g~~l~~~Gv~l 142 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ-WLAVILAICGVLV 142 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999 8888888888774
No 34
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.92 E-value=0.44 Score=45.45 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=83.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhccccc
Q 018509 80 TQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWAT 158 (355)
Q Consensus 80 ~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~ 158 (355)
++..+....|++-++-+.|-+.++++.-|.---+ ....-..+++++.++++++.++.|-.+.++.+.|+...=.+
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~---- 90 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS---- 90 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC----
Confidence 4566788889999999999999999999885544 55544599999999999999999999999888888776311
Q ss_pred ccccCCccCCcchH--h---h-hhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcc
Q 018509 159 ETSSPFSFKDSLDA--E---L-RTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKIT 210 (355)
Q Consensus 159 ~~~~pf~lfd~d~~--~---~-~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~g 210 (355)
+..--|+++. . + ..+...| +...+++.++++.-.+..-|+.++.+
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~G---~~~vl~~~~~S~~agVy~E~~lK~~~ 141 (244)
T PF04142_consen 91 ----SSQSSDNSSSSSVHHDASNQNPLLG---LLAVLAAAFLSGFAGVYFEKLLKRSN 141 (244)
T ss_pred ----CccccccccccccccccccchhHhH---HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1000011111 1 0 1112343 33667777788888888777776553
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.67 E-value=0.18 Score=42.86 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=63.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHH
Q 018509 80 TQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFY 150 (355)
Q Consensus 80 ~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~ 150 (355)
+-+..++..|+.+.++++.-|.-+++++|+.... +.....+..+++.++++|+.++.+..|.++.+.|++.
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 4566777788888899999999999999996666 8889988889999999999999999999999999864
No 36
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.39 E-value=0.16 Score=49.14 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=76.1
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhccc-ccchhhHHH-hhhhhh
Q 018509 42 YLSQTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLK-SCGPVRALL-AEYSGA 119 (355)
Q Consensus 42 ~l~~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~-~cGplrsiL-~e~s~~ 119 (355)
.++.+|.+.++.-+..-+..+..+....+ . .++.+++.+.+.+..|++..+-+.+++.|++ +-|+-++.. +...|+
T Consensus 173 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pv 250 (290)
T TIGR00776 173 AFGVDGLSVLLPQAIGMVIGGIIFNLGHI-L-AKPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVI 250 (290)
T ss_pred HcCCCcceehhHHHHHHHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHH
Confidence 44567777766555433433333333432 1 1222344444555578886677889999999 999998888 777787
Q ss_pred HHHHHHHHHhCCCCCcchh----hHHHHHHHHHHHH
Q 018509 120 VLGVLSAVLYGRRGHVWKK----VGGLIAILASFYF 151 (355)
Q Consensus 120 Vl~~Ls~lf~g~~~~~~k~----rG~~l~~igvl~l 151 (355)
+.++.+.++++|+-++++. .|.++.+.|+++.
T Consensus 251 ia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 251 ISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 8888899999999999998 9999988888775
No 37
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.39 E-value=0.32 Score=45.36 Aligned_cols=131 Identities=12% Similarity=-0.002 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhh----ccCCCCCCcchhHHHHHHHHHHH
Q 018509 185 MVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLII----GSKSSSSVDLPFSAWAFLSTTLF 260 (355)
Q Consensus 185 v~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~----~~~s~~s~~~~~~~w~~l~~~vF 260 (355)
+...+++.++|..-....|.. .+. ++--+..+=.++++++++|+.....-. ...+... ....|........
T Consensus 4 ~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~ 78 (256)
T TIGR00688 4 IIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQ---KRPLILSLLLCGL 78 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcc---cchHHHHHHHHHH
Confidence 347889999999999999974 344 788888888999998888876442100 0000011 1222333222222
Q ss_pred HHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 018509 261 GIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 261 ~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~ 321 (355)
...+.++....+.++.....++.-....|++.+++.-++++|+++..+ .++.++-..||.
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~-~l~~~~~~~Gv~ 138 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ-FIAVIIATLGVI 138 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHH
Confidence 266777778888899988888888999999999999999999999998 777666666765
No 38
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.86 E-value=0.35 Score=40.80 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 257 TTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 257 ~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
..+..+.+.||....+-++++...+.+-...-+...++...++++|++|..+ .+|-.+++.||-...
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~-~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH-WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHh
Confidence 3446778899999999999999999999988889999999999999999999 999999999986443
No 39
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.47 E-value=1.2 Score=40.92 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=66.0
Q ss_pred CCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHHhhhhhhHHHHH-HHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 75 RPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALLAEYSGAVLGVL-SAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 75 ~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL~e~s~~Vl~~L-s~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
.+....+|......|+++. +-..+|+++++.-++.+.....+...+.+.+ +.++++|+.++++..|+.+.+.|++...
T Consensus 207 ~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 207 APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 5667788999999999999 6999999999999999988855666655554 9999999999999999988888887764
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=94.33 E-value=0.28 Score=41.36 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=55.0
Q ss_pred cccchhhHHHHHH--HHH-HHHHHHHhcccccchh-hHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 78 LNTQMVPSVINGG--ITA-LYFILWGKGLKSCGPV-RALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 78 ~~~Qw~~il~~gv--v~~-l~~lLwf~gL~~cGpl-rsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
.++.|..+...++ ++. +...+|-.+++.- |+ .+-. .+.+++...+++.++++|+.+..|..|..+.+.|++++-
T Consensus 30 ~~~~~~~l~~~~~~~~~~~l~~~~~~~al~~i-plg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 30 GKRRKHIVLWLGLALACLGLAMVLWLLVLQNV-PVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444544444433 433 7888999999985 55 4444 556667788889999999999999999999999998763
No 41
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=94.25 E-value=0.32 Score=48.41 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHH----hcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 83 VPSVINGGITALYFILWG----KGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 83 ~~il~~gvv~~l~~lLwf----~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
..++...+.+++...+|. .+++.++|+++.. +-..|++..+++.+++||..++.+..|+++.+.|++..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 334444445556666666 5999999999999 88888888888999999999999999999999999764
No 42
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.83 E-value=3.4 Score=41.43 Aligned_cols=268 Identities=16% Similarity=0.157 Sum_probs=151.9
Q ss_pred HHHHHHHHhHhhhhcc----CC--------chhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHH
Q 018509 30 FLRIWSVYSMYRYLSQ----TG--------VSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFI 97 (355)
Q Consensus 30 ~lr~~~i~~~y~~l~~----~p--------~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~l 97 (355)
+.=+++-|..|-.++. .| -|..+..|+=.+.+.+.-...-|-|+.....+.-|.+.-..|+.+.+...
T Consensus 19 ~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~ 98 (327)
T KOG1581|consen 19 FSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSW 98 (327)
T ss_pred HHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchH
Confidence 3445555555556654 11 24445555555554443333333333345555666666777999999999
Q ss_pred HHHhcccccchhhHHHhhhhhhHHHHH-HHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhh
Q 018509 98 LWGKGLKSCGPVRALLAEYSGAVLGVL-SAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRT 176 (355)
Q Consensus 98 Lwf~gL~~cGplrsiL~e~s~~Vl~~L-s~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~ 176 (355)
+=+.+|||--=..-+|+..+-++...+ ..+.++++-...+-.=+++.-.|+..+. +||++|...+.
T Consensus 99 ~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~-------------l~~~s~s~~~~ 165 (327)
T KOG1581|consen 99 CGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFS-------------LFPNSDSSSKS 165 (327)
T ss_pred HHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEE-------------EecCCCCcccc
Confidence 999999999888888888888844444 6777888877667666666666666665 89998844333
Q ss_pred h---hhhccchhHHHHHHHHHHHHHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCc----ch
Q 018509 177 E---QVLGMKEMVVPLLAGILSALRRVIARRVSLKIT-LKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVD----LP 248 (355)
Q Consensus 177 ~---~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~g-g~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~----~~ 248 (355)
. ...|+. +++..+.....-.+...++-.+.+ ++-.+--..++.+++.-.-- ....+.-.++++ |+
T Consensus 166 g~~ns~~G~~---Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~----li~qg~~~~av~F~~~hp 238 (327)
T KOG1581|consen 166 GRENSPIGIL---LLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY----LILQGHLLPAVSFIKEHP 238 (327)
T ss_pred CCCCchHhHH---HHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh----hhcCCCCchHHHHHHcCh
Confidence 3 244433 555555555544444444444333 44444445555555543222 121222222211 22
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHhhhhcccccCcchhhhh--HHHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Q 018509 249 FSAWAFLSTTLFG---IILIFYVDAMAEERLHMVFSSPRHLMVA--GGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEA 323 (355)
Q Consensus 249 ~~~w~~l~~~vF~---~VL~fyvesi~~~rl~~~~ss~r~~lV~--~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~ 323 (355)
--+|-.+.-+..+ =..+|| -+||-|+..=. --+.| ++.++++-.+++-++|..| -+|.+++.-|++.-
T Consensus 239 ~~~~Di~l~s~~gavGQ~FI~~----TI~~FGslt~t--~I~ttRk~~si~lS~i~f~h~~s~~q-~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 239 DVAFDILLYSTCGAVGQLFIFY----TIERFGSLTFT--TIMTTRKMVSIMLSCIVFGHPLSSEQ-WLGVLIVFGGIFLE 311 (327)
T ss_pred hHHHHHHHHHHhhhhhhheehh----hHhhcccHHHH--HHHHHHHHHHHHHHHHHhCCccchhh-ccCeeeehHHHHHH
Confidence 3333222222222 233332 23444442100 01122 6788888899999999999 89999988888744
Q ss_pred c
Q 018509 324 T 324 (355)
Q Consensus 324 t 324 (355)
.
T Consensus 312 ~ 312 (327)
T KOG1581|consen 312 I 312 (327)
T ss_pred H
Confidence 3
No 43
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.79 E-value=4.9 Score=39.45 Aligned_cols=199 Identities=12% Similarity=0.157 Sum_probs=119.4
Q ss_pred HhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhhhhhh
Q 018509 100 GKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQ 178 (355)
Q Consensus 100 f~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~ 178 (355)
..+|+|-.=...+| -.-.|+ ...+-.++.++|..+|++--.++.++..+.+. ....++--.-++|
T Consensus 103 N~Alq~vpYPTqVlgKScKPI-PVMilGVl~~~KsY~w~kY~cVL~IV~GValF-------------mYK~~Kv~g~e~~ 168 (337)
T KOG1580|consen 103 NQALQYVPYPTQVLGKSCKPI-PVMILGVLFAHKSYHWRKYCCVLMIVVGVALF-------------MYKENKVGGAEDK 168 (337)
T ss_pred cchhcccCCcHHHhcccCCCc-ceeeeehhhhcccccHHHHHHHHHHHHHHHHh-------------hccccccCCCccc
Confidence 47788877667777 444454 11122334556678888888777777666664 3332222233346
Q ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhhhhcc--cchhHHHHHHH-----HHHHHHhHHHHHHhhhccCCCCCCcchhHH
Q 018509 179 VLGMKEMVVPLLAGILSALRRVIARRVSLKIT--LKRRLHAITIT-----SATCFLFPVAMWDLIIGSKSSSSVDLPFSA 251 (355)
Q Consensus 179 ~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~g--g~kRL~Alt~l-----~stv~L~P~al~~~~~~~~s~~s~~~~~~~ 251 (355)
-.|.+++ ++++++-+..+-..+.-|.-..++ |..+.. ++.+ .++.+++-=-+||.+.+... ++..+
T Consensus 169 t~g~GEl-LL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~-~~NlwStL~Lg~g~lfTGElweF~yF~~R-----hP~~~ 241 (337)
T KOG1580|consen 169 TFGFGEL-LLILSLAMDGLTGSIQDRIRASYQRTGTSMMF-YTNLWSTLYLGAGLLFTGELWEFFYFVQR-----HPYVF 241 (337)
T ss_pred ccchHHH-HHHHHHHhcccchhHHHHHHHhhccCchhhHH-HHHHHHHHHhhhhheehhhHHHHHHHHHh-----ccHHH
Confidence 7788888 889999888777777666655555 333333 3333 34455555566676655322 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 018509 252 WAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 252 w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~ 321 (355)
|-. ...-...+|+...-.--.+..++..-|+----=-+++++...++.+..+|.-| -+++.++..|..
T Consensus 242 ~~l-~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ-wlgtvlVF~aL~ 309 (337)
T KOG1580|consen 242 WDL-TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ-WLGTVLVFSALT 309 (337)
T ss_pred HHH-HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH-HHHHHHHHHHhh
Confidence 433 22223445555444344455555444433222237899999999999999999 889988888765
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=93.69 E-value=1.7 Score=42.74 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccc------hHHHHHHHHHHhhhhhc
Q 018509 249 FSAWAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFS------LIGFIICSLILGFGIYE 322 (355)
Q Consensus 249 ~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~s------l~g~lic~~ll~~gv~~ 322 (355)
...|..+...+...+.-.|.=|-+-++-+...-.|-.+..=..+.++...+++.|++ +.+|+.|.++++.||+.
T Consensus 210 ~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~l 289 (300)
T PF05653_consen 210 PLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFL 289 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhe
Confidence 344555444455667777788888888888877777777667777777777776663 56778888999999999
Q ss_pred ccc
Q 018509 323 ATS 325 (355)
Q Consensus 323 ~t~ 325 (355)
.++
T Consensus 290 L~~ 292 (300)
T PF05653_consen 290 LSS 292 (300)
T ss_pred eec
Confidence 885
No 45
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=93.20 E-value=1.7 Score=41.62 Aligned_cols=124 Identities=8% Similarity=0.093 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHH
Q 018509 193 ILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAM 271 (355)
Q Consensus 193 ~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi 271 (355)
+++..+...-|....+...|--+..+-.+++++.+.+. +..... +... ....-|.. +-+.++ ..+++..+|.
T Consensus 12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~ 84 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS--WSSGLP--KRLK--ISSALLKLLLPVAIV-HTIGHVTSNV 84 (302)
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH--HHhCCC--CCCC--CCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444444444444433566666666666666655443 221111 1111 12334555 555555 4777889999
Q ss_pred HhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 272 AEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 272 ~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
+.+....+..+.-....|+++++...++++|+++..+ .+|.++...|+....
T Consensus 85 ~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~-~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 85 SLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL-WLSLLPIVGGVALAS 136 (302)
T ss_pred HHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH-HHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999 788899899987543
No 46
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=92.92 E-value=0.15 Score=50.42 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=96.4
Q ss_pred HHHHHHHHhHhhhhccCCchhhHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhHHHHHHHHHHHHHHHHhcccccch
Q 018509 30 FLRIWSVYSMYRYLSQTGVSVILFIFCCLVPSSILFLLLQKPW-KGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGP 108 (355)
Q Consensus 30 ~lr~~~i~~~y~~l~~~p~~lv~f~Fl~~l~ss~~~l~~qkP~-~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGp 108 (355)
++-..+-+.+-..+.+-|.-+.++|+++......+.++..+-+ -|.+-. | +-++.-|+.|..=..+-++++.|-.=
T Consensus 47 ~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~-R--~~LiLRg~mG~tgvmlmyya~~~msl 123 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGK-R--KWLILRGFMGFTGVMLMYYALMYMSL 123 (346)
T ss_pred HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCc-E--EEEEeehhhhhhHHHHHHHHHhhcch
Confidence 4444455555566666678888899888888777777766665 233322 2 23344577777666677888888866
Q ss_pred hhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcch
Q 018509 109 VRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLD 171 (355)
Q Consensus 109 lrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~ 171 (355)
-.+++ -=.+|..+..+|-++++|+-+++-..|.++.++||+++. .=|| +|+.|+
T Consensus 124 aDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv--------RPpF-lFG~~t 178 (346)
T KOG4510|consen 124 ADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV--------RPPF-LFGDTT 178 (346)
T ss_pred hheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe--------cCCc-ccCCCc
Confidence 67777 778899999999999999999999999999999998874 5666 788763
No 47
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=92.00 E-value=3.1 Score=36.51 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHH
Q 018509 186 VVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILI 265 (355)
Q Consensus 186 ~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~ 265 (355)
.+.++++++-+.-+..--|++.+.|.+-.-..+++.++++++.......... +.+. ....++|.++ --+++.+ .
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~---~~~~-~~~~p~w~~l-GG~lG~~-~ 77 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP---SLAS-LSSVPWWAYL-GGLLGVF-F 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc---ccch-hccCChHHhc-cHHHHHH-H
Confidence 4788999999999999999999997799999999999999987776655432 1111 0124556552 1222211 1
Q ss_pred HHHHHHHhhhhcccccCcchhhhhHHHHHHHHHH-----hccccchHHHHHHHHHHhhhhh
Q 018509 266 FYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMV-----YKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 266 fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~-----~~~~~sl~g~lic~~ll~~gv~ 321 (355)
-+...+...|++...+..-...-=..+.++.+.+ .+.++++.. +++..++..|+.
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r-~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR-ILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH-HHHHHHHHHHHh
Confidence 1234566689998877766555557788888884 788999999 999999999875
No 48
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=91.72 E-value=0.77 Score=38.02 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 255 LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 255 l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
....+.+....+.....+-+..+. ..+.-.++.|.++++..-++++|+++..+ +++.++...||-.-.
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~-~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRR-WLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHh
Confidence 333444555667777788888874 55677888999999999999999999999 889999999987544
No 49
>COG2510 Predicted membrane protein [Function unknown]
Probab=91.39 E-value=3.6 Score=36.67 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=79.6
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 018509 202 ARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEERLHMVFS 281 (355)
Q Consensus 202 sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~~s 281 (355)
.-|.-.|.-.|.--+++-+.+.++++.-+.+...-....++.+ .-.|.++..+-....++.+....+.++=.+++=
T Consensus 21 F~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~----~k~~lflilSGla~glswl~Yf~ALk~G~as~V 96 (140)
T COG2510 21 FAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG----PKSWLFLILSGLAGGLSWLLYFRALKKGKASRV 96 (140)
T ss_pred HHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccC----cceehhhhHHHHHHHHHHHHHHHHHhcCCcceE
Confidence 3444444446666777777777777766666544333333333 334666444445566777777777777777777
Q ss_pred CcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 282 SPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 282 s~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
.|-+-.=+.+.+++..+++||++|+.+ .||.+++..|+-.
T Consensus 97 vPldk~svvl~~lls~lfL~E~ls~~~-~iG~~LI~~Gail 136 (140)
T COG2510 97 VPLDKTSVVLAVLLSILFLGERLSLPT-WIGIVLIVIGAIL 136 (140)
T ss_pred EEcccccHHHHHHHHHHHhcCCCCHHH-HHHHHHHHhCeee
Confidence 777777788889999999999999999 9999999988754
No 50
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=90.11 E-value=20 Score=35.21 Aligned_cols=232 Identities=13% Similarity=0.143 Sum_probs=127.5
Q ss_pred HHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhh-HHHHHHHHHhCCCCCcc-
Q 018509 60 PSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGA-VLGVLSAVLYGRRGHVW- 136 (355)
Q Consensus 60 ~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~-Vl~~Ls~lf~g~~~~~~- 136 (355)
+.++...++.+|. .....+.|..-+.-|+.=++=.+.-|.+.++-|--|+.= ..-.-. ..++..++++||-.+..
T Consensus 25 i~alv~~~~~~p~--~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~ 102 (269)
T PF06800_consen 25 IFALVVFLFRQPA--FSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ 102 (269)
T ss_pred HHHHHHHHHhCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch
Confidence 3344445555555 222235555556666666677788888888877554433 222223 45556778888854433
Q ss_pred hhhHH---HHHHHHHHHHhhcccccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccch
Q 018509 137 KKVGG---LIAILASFYFLSQGWATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKITLKR 213 (355)
Q Consensus 137 k~rG~---~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~k 213 (355)
+..|. ++.++|+.+.- .-|+++......+-. .+++..++++.+-...|...-|-...+--..-
T Consensus 103 ~~~G~~Al~liiiGv~lts-------------~~~~~~~~~~~~~~~-~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~ 168 (269)
T PF06800_consen 103 KIIGFLALVLIIIGVILTS-------------YQDKKSDKSSSKSNM-KKGILALLISTIGYWIYSVIPKAFHVSGWSAF 168 (269)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------cccccccccccccch-hhHHHHHHHHHHHHHHHHHHHHhcCCChhHhH
Confidence 43333 23333443332 233322211111122 44566888899999999999887665444555
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHH
Q 018509 214 RLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGC 292 (355)
Q Consensus 214 RL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c 292 (355)
=-+|+.+++++.+...+. .... .....|.- +.-.+++.---+| -++.++.+...+.+..-+-..+.
T Consensus 169 lPqaiGm~i~a~i~~~~~--~~~~---------~~k~~~~nil~G~~w~ignl~~--~is~~~~G~a~af~lSQ~~vvIS 235 (269)
T PF06800_consen 169 LPQAIGMLIGAFIFNLFS--KKPF---------FEKKSWKNILTGLIWGIGNLFY--LISAQKNGVATAFTLSQLGVVIS 235 (269)
T ss_pred HHHHHHHHHHHHHHhhcc--cccc---------cccchHHhhHHHHHHHHHHHHH--HHhHHhccchhhhhHHhHHHHHH
Confidence 556777777766654433 1110 11222433 4444444433333 23456888888888877777777
Q ss_pred HHHHHHHhccccch---HHHHHHHHHHhhhh
Q 018509 293 IIVMEMVYKMDFSL---IGFIICSLILGFGI 320 (355)
Q Consensus 293 ~iv~e~~~~~~~sl---~g~lic~~ll~~gv 320 (355)
++---++++|.=+- ...+++.++++.|.
T Consensus 236 tlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 236 TLGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred HhhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 77777788887553 33344445455553
No 51
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.88 E-value=15 Score=37.01 Aligned_cols=214 Identities=19% Similarity=0.111 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhcccccchhhHHHhhhhhh---HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccC
Q 018509 87 INGGITALYFILWGKGLKSCGPVRALLAEYSGA---VLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSP 163 (355)
Q Consensus 87 ~~gvv~~l~~lLwf~gL~~cGplrsiL~e~s~~---Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~p 163 (355)
-.++.-..=..+.+.||-++.+- +---.-|+ -.+++|+-|+++..+++|-.|....++|.+..-
T Consensus 91 ~Pal~Di~gsslm~vgL~lTsAS--sfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg----------- 157 (372)
T KOG3912|consen 91 PPALCDIAGSSLMYVGLNLTSAS--SFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG----------- 157 (372)
T ss_pred ChHHHHHhhhHHHHHHHHHhhHH--HHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee-----------
Confidence 35666667777888888887542 22111222 678999999999999999999999999887764
Q ss_pred CccCC---cchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHhHHHHHHhhhcc
Q 018509 164 FSFKD---SLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKIT-LKRRLHAITITSATCFLFPVAMWDLIIGS 239 (355)
Q Consensus 164 f~lfd---~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~g-g~kRL~Alt~l~stv~L~P~al~~~~~~~ 239 (355)
.-| .+|+..+-.+.+ .+|. +.++|=+.-+.--+.-.|.-.+.+ .|-+.-++--+++.+++.-.++--+....
T Consensus 158 --~~d~~~~~~p~~d~s~ii-tGdl-lIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~ 233 (372)
T KOG3912|consen 158 --SLDVHLVTDPYTDYSSII-TGDL-LIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS 233 (372)
T ss_pred --eeecccccCCccccccch-hhhH-HHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec
Confidence 222 222222222233 5666 566666666666666655555554 88899999889998877766665444332
Q ss_pred CCCCC------CcchhHHHH-----H-HHHHHHHHHHH--HH-HHHHHhhhhcc-----cccCcchhhhhHHHHHHHHHH
Q 018509 240 KSSSS------VDLPFSAWA-----F-LSTTLFGIILI--FY-VDAMAEERLHM-----VFSSPRHLMVAGGCIIVMEMV 299 (355)
Q Consensus 240 ~s~~s------~~~~~~~w~-----~-l~~~vF~~VL~--fy-vesi~~~rl~~-----~~ss~r~~lV~~~c~iv~e~~ 299 (355)
..+-+ -..|...|. + ++++..+.+.+ || +--+.+.|... .-++.|-+.+=.+.+ -.
T Consensus 234 ~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si----~m 309 (372)
T KOG3912|consen 234 GDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSI----AM 309 (372)
T ss_pred CCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHH----HH
Confidence 21111 113455552 2 44444443322 11 11111222221 223444333322222 23
Q ss_pred hccccchHHHHHHHHHHhhhhhc
Q 018509 300 YKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 300 ~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
--|.|.+.| +.|=++++.|+..
T Consensus 310 ~~E~f~llq-ilGFliLi~Gi~l 331 (372)
T KOG3912|consen 310 GWEYFHLLQ-ILGFLILIMGIIL 331 (372)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHH
Confidence 457788888 7788888888763
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=89.50 E-value=27 Score=35.67 Aligned_cols=246 Identities=13% Similarity=0.148 Sum_probs=131.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcC-----CCCCCCCccc------chhhHHHHHHHHHHHHHHHHhcccccchhhHHH-h
Q 018509 47 GVSVILFIFCCLVPSSILFLLLQK-----PWKGRPLLNT------QMVPSVINGGITALYFILWGKGLKSCGPVRALL-A 114 (355)
Q Consensus 47 p~~lv~f~Fl~~l~ss~~~l~~qk-----P~~g~~l~~~------Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~ 114 (355)
|.+.+...=+.|++..+.+++.|+ ++ .+.+++. .-.++.+.+++-++=|-+-+.++.+--|..-.. .
T Consensus 47 ~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~ 125 (345)
T KOG2234|consen 47 PTTAVFLTEVIKLVFCLFLLLFEERKYAKKS-LKSLSKEILAAPRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTY 125 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhcCHHHHhChHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhh
Confidence 357777788889999888998883 33 4555542 234556666666665667777777776553333 3
Q ss_pred hhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHh-hhhhh--hhccchhHHHHHH
Q 018509 115 EYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAE-LRTEQ--VLGMKEMVVPLLA 191 (355)
Q Consensus 115 e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~-~~~~~--~lG~~Dv~Lli~a 191 (355)
...=.=+++++.++++++.+..| .+.+..+.+..+++ |.| .-|+.+.. +..++ ++|.. ..+.+
T Consensus 126 qlKI~tTA~f~vl~L~rkLs~~Q-w~Al~lL~~Gv~~v--------Q~~--~~~~~~a~~~~~~~n~~~G~~---avl~~ 191 (345)
T KOG2234|consen 126 QLKILTTAIFSVLILRRKLSRLQ-WMALVLLFAGVALV--------QLP--SLSPTGAKSESSAQNPFLGLV---AVLVA 191 (345)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHH--------hcc--CCCCCCccCCCcccchhhhHH---HHHHH
Confidence 33333677889999999999888 55555555555554 122 12333322 22233 44443 34444
Q ss_pred HHHHHHHHHHhhhhhhhcccc-----hhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCc----ch-hHHHHH-HHHHHH
Q 018509 192 GILSALRRVIARRVSLKITLK-----RRLHAITITSATCFLFPVAMWDLIIGSKSSSSVD----LP-FSAWAF-LSTTLF 260 (355)
Q Consensus 192 ~~l~a~~~~~sRr~s~~~gg~-----kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~----~~-~~~w~~-l~~~vF 260 (355)
-+++..-.+..-|..++.... -++.-++ .+++.......+.+..... .| ...|.. +.-++-
T Consensus 192 c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g--------~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~g 263 (345)
T KOG2234|consen 192 CFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFG--------ILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVG 263 (345)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--------HHHHHHHHhhccccccccCCccccccHHHHHHHHHHhcc
Confidence 455555555555555433211 1222222 2333333333322222101 11 222655 666655
Q ss_pred HHHHH---HHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 261 GIILI---FYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 261 ~~VL~---fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
|...+ =|.|||-..= .+| +-.+++++.+..+.+-.+|+ .|+++..+++.+++.-.
T Consensus 264 GLlvs~v~KyADnIlK~f----~~s----~aiilt~v~S~~Lf~~~~t~-~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 264 GLLVSLVMKYADNILKGF----STS----VAIILTTVASIALFDFQLTL-YFLLGALLVILSIFLYS 321 (345)
T ss_pred chhHHHHHHHhHHHHHHH----HHH----HHHHHHHHHHHHHccCCchH-HHHHHHHHHHHHHHHhh
Confidence 54443 3566654321 111 33355555553344444444 57999999999998544
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=89.05 E-value=2.5 Score=36.61 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcchh-hhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccC
Q 018509 257 TTLFGIILIFYVDAMAEERLHMVFSSPRHL-MVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLD 327 (355)
Q Consensus 257 ~~vF~~VL~fyvesi~~~rl~~~~ss~r~~-lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~ 327 (355)
..+....++||..+.+-++++...+=+-+- .=....+++..++++|++|+.+ .+|-.+++.||-.....+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~-~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK-IAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHhhcCC
Confidence 356677889999999999998877766543 4446667777789999999999 999999999987654433
No 54
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=88.70 E-value=4.2 Score=35.63 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=77.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHHhhhhhh-HHHHH
Q 018509 46 TGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALLAEYSGA-VLGVL 124 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL~e~s~~-Vl~~L 124 (355)
+|..-+.+.|...+..++++..+.++.+.+.+++..|...+ -|++|+.+..+-......-|+.++...-..+- +.+++
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888877776556667777777777 69999999999999999999998888444444 44444
Q ss_pred HHHH-----hCCCCCcchhhHHHHHHHHHH
Q 018509 125 SAVL-----YGRRGHVWKKVGGLIAILASF 149 (355)
Q Consensus 125 s~lf-----~g~~~~~~k~rG~~l~~igvl 149 (355)
-=-| .+++.+++|..|..+.+.|++
T Consensus 108 iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 108 IDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 2222 456677789999999998875
No 55
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=88.46 E-value=2.2 Score=37.13 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=49.2
Q ss_pred HHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHH--HHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 85 SVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSA--VLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 85 il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~--lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
.+..|++.. +-..+|..+++.-++-.+-= ...++.....++. ++++|+.+..|..|+.+.+.|++++-
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 455666666 88889999999864443333 4445444444444 38999999999999999999998874
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=87.85 E-value=2.8 Score=35.65 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCcchh-hhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Q 018509 256 STTLFGIILIFYVDAMAEERLHMVFSSPRHL-MVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATS 325 (355)
Q Consensus 256 ~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~-lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~ 325 (355)
...+....+.||.-+.+-++++...+=.-+- +=....+++.-++++|++|+.+ ++|-.+++.||-...-
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~-~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA-IIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHhc
Confidence 3456778899999999999988866544433 3345667777789999999999 9999999999886543
No 57
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=86.18 E-value=11 Score=34.63 Aligned_cols=37 Identities=3% Similarity=-0.015 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 285 HLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 285 ~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
...-+++++++...++++.+|..+ .+++.++..|++.
T Consensus 185 ~~~~~~~s~lls~~~f~~~ls~~~-~~g~~lV~~~~~l 221 (222)
T TIGR00803 185 TALSIILSTLASVRLFDAKISSTF-YLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHH-HHHHHHHHeeeEe
Confidence 334457888888889999999999 8999999988763
No 58
>PRK11431 multidrug efflux system protein; Provisional
Probab=83.54 E-value=5 Score=33.91 Aligned_cols=71 Identities=15% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchh-hhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Q 018509 252 WAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHL-MVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEA 323 (355)
Q Consensus 252 w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~-lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~ 323 (355)
|.+....+.+..++||.-+.+-++++...+=.-+- .=+...+++..++++|++|+.+ ++|-.+++.||-..
T Consensus 29 ~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~-~~gi~lIi~GVv~l 100 (105)
T PRK11431 29 LTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR-LLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHhh
Confidence 44433446778899999999999988865544333 4446667777789999999999 99999999998654
No 59
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=82.62 E-value=5.2 Score=34.11 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhh-HHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 252 WAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVA-GGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 252 w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~-~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
|.+....+....++||.=+.+-++++...+=.-+--+- ...+++..++++|++|+.+ ++|-.+++.||-.
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~-~~gi~lIi~GVi~ 105 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG-WIGLVLLLAGMVM 105 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHHHH
Confidence 44444446778899999999999998876655544443 5556666668999999999 9999999999864
No 60
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=81.85 E-value=9.7 Score=30.95 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcch-hhhhHHHHHHHHHHhccccchHHHHHHHH
Q 018509 257 TTLFGIILIFYVDAMAEERLHMVFSSPRH-LMVAGGCIIVMEMVYKMDFSLIGFIICSL 314 (355)
Q Consensus 257 ~~vF~~VL~fyvesi~~~rl~~~~ss~r~-~lV~~~c~iv~e~~~~~~~sl~g~lic~~ 314 (355)
..+....++||..+.+-+|++.+.+-+-+ -+-+...+++...+++|++|+.+ .+|-.
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~-~~gi~ 91 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK-WLGIG 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-Hhhee
Confidence 34557889999999999999988775544 35567778888889999999999 55433
No 61
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=78.42 E-value=79 Score=31.90 Aligned_cols=221 Identities=13% Similarity=0.090 Sum_probs=122.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhcccccchhhHHHhhhhhhHHHHHHHH-HhCCCCCcchhhHHHHHHHHHHHHhhccc
Q 018509 78 LNTQMVPSVINGGITALYFILWGKGLKSCGPVRALLAEYSGAVLGVLSAV-LYGRRGHVWKKVGGLIAILASFYFLSQGW 156 (355)
Q Consensus 78 ~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL~e~s~~Vl~~Ls~l-f~g~~~~~~k~rG~~l~~igvl~lLs~gw 156 (355)
+..-|+-.++.+.+....+-|=..+|-|--=..-+.+.-.-.+...+... ..|.+ .++.-.+..+.+.-.+..
T Consensus 102 r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkR-Y~v~d~~aA~lm~lGli~----- 175 (367)
T KOG1582|consen 102 RVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKR-YGVHDYIAAMLMSLGLIW----- 175 (367)
T ss_pred eecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeecccc-ccHHHHHHHHHHHHHHHh-----
Confidence 34557777888888777666655555554433334444444444444333 44543 445444444444333332
Q ss_pred ccccccCCccCCcchHhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccc-hhHHHHHHHHHHHHHhHHHHHHh
Q 018509 157 ATETSSPFSFKDSLDAELRTEQVLGMKEMVVPLLAGILSALRRVIARRVSLKITLK-RRLHAITITSATCFLFPVAMWDL 235 (355)
Q Consensus 157 ~~~~~~pf~lfd~d~~~~~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~-kRL~Alt~l~stv~L~P~al~~~ 235 (355)
-+..++. +.++-+..| +...-.|+++.|.-..+.-+.++++++. .-.--++.-++.++++.+.+...
T Consensus 176 FTLADs~---------~sPNF~~~G---v~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTg 243 (367)
T KOG1582|consen 176 FTLADSQ---------TSPNFNLIG---VMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTG 243 (367)
T ss_pred hhhcccc---------cCCCcceee---HHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcc
Confidence 2222211 111112333 4467789999999999999999988733 33445666667777776665432
Q ss_pred hhccCCCCCCcchhHHHHH---------HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhh----HHHHHHHHHHhcc
Q 018509 236 IIGSKSSSSVDLPFSAWAF---------LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVA----GGCIIVMEMVYKM 302 (355)
Q Consensus 236 ~~~~~s~~s~~~~~~~w~~---------l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~----~~c~iv~e~~~~~ 302 (355)
-. +++|.. .+ .++-...+|...+..-..+. .+++.---.|| -+++++..+++..
T Consensus 244 e~-----------f~a~~fcaehp~~tyGy-~~~~s~~gylG~~~VLalI~-~fGA~~aatvTTaRKavTi~lSfllFsK 310 (367)
T KOG1582|consen 244 EL-----------FSAWTFCAEHPVRTYGY-AFLFSLAGYLGIVFVLALIK-LFGALIAATVTTARKAVTILLSFLLFSK 310 (367)
T ss_pred cc-----------hhhhHHHHhCcHhHHHH-HHHHHHHhHhhHHHHHHHHH-HhchhHHHHHHHhHhHHHHHHHHHHHcC
Confidence 11 333322 11 22223345555544433332 22222233343 4677777778888
Q ss_pred ccchHHHHHHHHHHhhhhhcccccCCCC
Q 018509 303 DFSLIGFIICSLILGFGIYEATSLDHGR 330 (355)
Q Consensus 303 ~~sl~g~lic~~ll~~gv~~~t~~~~~~ 330 (355)
.||.-- .-+++++..|+|.--.++|+|
T Consensus 311 PfT~qy-~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 311 PFTEQY-VWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred chHHHH-hhhhHHHHHHHHhhcccCCCC
Confidence 888766 888999999999766555444
No 62
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=74.53 E-value=20 Score=30.89 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 018509 189 LLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYV 268 (355)
Q Consensus 189 i~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyv 268 (355)
++.+++|..-.-..||-+.+.+..|+-. ...-.... ++.. ...+.++..=..|+++-||.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~-----Ll~n-------------~~y~ipf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF-----LLLN-------------PKYIIPFLLNQSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH-----HHHh-------------HHHHHHHHHHHHHHHHHHHH
Confidence 3456777777778888887776555431 11111111 1110 22223333333344444432
Q ss_pred HHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhc
Q 018509 269 DAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYE 322 (355)
Q Consensus 269 esi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~ 322 (355)
-.|-+.+.+.|=-|-.+|+.+.+.+.+.+|+.....-.+|.+++..||..
T Consensus 62 ----L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 ----LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred ----HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 23777888999999999999999999999999777768899999998864
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=73.60 E-value=12 Score=36.04 Aligned_cols=106 Identities=10% Similarity=0.136 Sum_probs=72.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHh--cCCC-CC---CCCcccchhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhh
Q 018509 46 TGVSVILFIFCCLVPSSILFLLL--QKPW-KG---RPLLNTQMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSG 118 (355)
Q Consensus 46 ~p~~lv~f~Fl~~l~ss~~~l~~--qkP~-~g---~~l~~~Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~ 118 (355)
++....++.-+..++...+..+. ...+ +. -.-++..+..++.+++.+++-...++.-.+.+||+-..+ .-..-
T Consensus 183 ~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk 262 (303)
T PF08449_consen 183 SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRK 262 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence 33444444444455544444444 2222 11 112234677888889988866667777789999996666 66677
Q ss_pred hHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 119 AVLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 119 ~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
.+.-++|.++++++.++.+..|.++.+.|..+=
T Consensus 263 ~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 263 FLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 788888999999999999999999988887764
No 64
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=70.44 E-value=13 Score=38.46 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH-HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCC
Q 018509 54 IFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA-LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGR 131 (355)
Q Consensus 54 ~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~-l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~ 131 (355)
-++...|..+++-.+.+|. =.-++..|..-++.++.+++ +..-||.+|.-.|.|+-+-| ...+=-+..+.=.++.|+
T Consensus 290 nllllwP~l~iL~~~~~e~-F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~ 368 (416)
T KOG2765|consen 290 NLLLLWPPLIILDFFGEER-FELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGK 368 (416)
T ss_pred HHHHHhHHHHHHHHhccCc-ccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCC
Confidence 4444555566665665554 46677889999999999999 99999999999999997777 332221333334566788
Q ss_pred CCCcchhhHHHHHHHHHHHH
Q 018509 132 RGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 132 ~~~~~k~rG~~l~~igvl~l 151 (355)
.-++...+|.+..+.|.+..
T Consensus 369 ~~S~~~iiGsi~Ifv~Fv~v 388 (416)
T KOG2765|consen 369 HPSALYIIGSIPIFVGFVIV 388 (416)
T ss_pred CCCHHHHHHHHHHHHHHhhe
Confidence 88889999998888877655
No 65
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=68.65 E-value=55 Score=28.01 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCcchhh-hhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Q 018509 259 LFGIILIFYVDAMAEERLHMVFSSPRHLM-VAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEAT 324 (355)
Q Consensus 259 vF~~VL~fyvesi~~~rl~~~~ss~r~~l-V~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t 324 (355)
+.++.+.||.=+.+-++++...+=.-+-- =+..++++-..+++|++|+.+ ++|=.+++.||--..
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~-~~gl~LiiaGvi~Lk 102 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK-LLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH-HHHHHHHHHHHHHhh
Confidence 35567788888888888877554333333 345566666679999999999 999999999986543
No 66
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=67.56 E-value=34 Score=29.14 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHhcccccchhhHHH--hhhhhh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 95 YFILWGKGLKSCGPVRALL--AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 95 ~~lLwf~gL~~cGplrsiL--~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
...+.-.++|.- |+...= .+--+. .+++.+.++++|+.+..|..|..+.+.|++.+
T Consensus 48 sf~~Ls~al~~l-pvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 48 AFSALSQAVKGI-DLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 333445667653 665555 555555 66777888999999999999999999999875
No 67
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=66.52 E-value=15 Score=36.67 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=61.9
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccC
Q 018509 252 WAF--LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLD 327 (355)
Q Consensus 252 w~~--l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~ 327 (355)
|+. ..|..+|+-+.||-- +.|..+-++.-.++-|.++++++-.+++|++|.+. -+++++-..||-.-.++.
T Consensus 99 ~LiLRg~mG~tgvmlmyya~----~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e-aL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 99 WLILRGFMGFTGVMLMYYAL----MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE-ALGSLITLLGVVLIVRPP 171 (346)
T ss_pred EEEeehhhhhhHHHHHHHHH----hhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH-HHHHHHhhheEEEEecCC
Confidence 554 899999999999754 56777777888899999999999999999999999 999999999998877765
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=66.49 E-value=32 Score=29.82 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=43.6
Q ss_pred HHHHHHHhcccccchhhHHH--hhhhhh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 94 LYFILWGKGLKSCGPVRALL--AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 94 l~~lLwf~gL~~cGplrsiL--~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
+...+|-.++|.- |+...= .+--+. .+.+++.++++|+.+..|..|..+.+.|++.+
T Consensus 42 ~sf~~ls~al~~l-plsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 42 LSYIFLSFAVKKI-ALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 6677778888874 555444 232344 66777899999999999999999999999877
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=66.20 E-value=37 Score=28.79 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=42.6
Q ss_pred HHHHHHHhcccccchhhHHHhhhh--hh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 94 LYFILWGKGLKSCGPVRALLAEYS--GA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 94 l~~lLwf~gL~~cGplrsiL~e~s--~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
+...++-.++|.- |++..=+--+ +. .+.+++.++++|+.+..|..|..+.+.|++.+
T Consensus 42 ~sf~~l~~al~~i-pl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 42 ASFWLLAQTLAYI-PTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 4555566777764 5655543323 33 67778999999999999999999999999987
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=63.03 E-value=1.2e+02 Score=29.98 Aligned_cols=128 Identities=10% Similarity=0.148 Sum_probs=63.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHH
Q 018509 17 RHTPLQILHIIASFLRIWSVYSMYRYLSQTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYF 96 (355)
Q Consensus 17 r~~~~~~~l~~~k~lr~~~i~~~y~~l~~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~ 96 (355)
+.++=...++++-+.. |.....-++.+.+|.+...--=+--+.+++++..+++ ++..+++-.+=+..|++=.+=+
T Consensus 135 ~~~kgi~~Ll~stigy-~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~~~----~~~~~k~~~~nil~G~~w~ign 209 (269)
T PF06800_consen 135 NMKKGILALLISTIGY-WIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLFSK----KPFFEKKSWKNILTGLIWGIGN 209 (269)
T ss_pred chhhHHHHHHHHHHHH-HHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhccc----ccccccchHHhhHHHHHHHHHH
Confidence 3444445555553332 2222223334445544443222222334555555442 1222222233344566666777
Q ss_pred HHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 97 ILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 97 lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
+..+.+...-|.-.+=- ...+-++.++-+-++++|+-+++ -....++|.++++
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k---e~~~~~~G~~Liv 263 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK---EMIYTLIGLILIV 263 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh---hHHHHHHHHHHHH
Confidence 78888888888775544 66665566665666778864433 2334444544443
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=61.60 E-value=49 Score=27.94 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=41.3
Q ss_pred HHHHHHHhcccccchhhHHH--hhhhhh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 94 LYFILWGKGLKSCGPVRALL--AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 94 l~~lLwf~gL~~cGplrsiL--~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
+...+.-.++|.- |+...= .+--+. .+++++.+++||+.++.|..|..+.+.|++.+
T Consensus 41 ~sf~~Ls~al~~i-p~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 41 VSMALLAWAMKSL-PVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHhhC-CcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 4444455666653 555544 343344 67777999999999999999999999999876
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=53.62 E-value=13 Score=36.57 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=76.7
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q 018509 205 VSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAFLSTTLFGIILIFYVDAMAEERLHMVFSSPR 284 (355)
Q Consensus 205 ~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r 284 (355)
++.|.||+-|-+.+.+.++|.+. |+..... .+++.+ ...|.....+-..--++...|--+.+-++.+++.|-
T Consensus 20 v~~k~GG~p~qQ~lGtT~GALif---aiiv~~~-~~p~~T----~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPi 91 (288)
T COG4975 20 VANKFGGKPYQQTLGTTLGALIF---AIIVFLF-VSPELT----LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPI 91 (288)
T ss_pred eeeecCCChhHhhhhccHHHHHH---HHHHhee-ecCccc----hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccc
Confidence 35677889999999999888763 3333222 333333 122222222222234555666667788888887766
Q ss_pred hhhhh-HHHHHHHHHHhccccchHHHHH---HHHHHhhhhhcccccCCCCCCCCCCCCCCCC
Q 018509 285 HLMVA-GGCIIVMEMVYKMDFSLIGFII---CSLILGFGIYEATSLDHGRKDTFQKPDLSNG 342 (355)
Q Consensus 285 ~~lV~-~~c~iv~e~~~~~~~sl~g~li---c~~ll~~gv~~~t~~~~~~~~~~~~~~~s~~ 342 (355)
..-+- ..+++.-+++++|==+..++.+ .-++++.|+|.....||++|++-+.+++..|
T Consensus 92 StG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkg 153 (288)
T COG4975 92 STGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKG 153 (288)
T ss_pred cchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhh
Confidence 44333 3444555566777666665444 4457789999999877777754344434333
No 73
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=51.77 E-value=40 Score=27.33 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHhcccccchhhHHH--hhhhhh-HHHHHHHHHhCCCCCcchhhHHHH
Q 018509 93 ALYFILWGKGLKSCGPVRALL--AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLI 143 (355)
Q Consensus 93 ~l~~lLwf~gL~~cGplrsiL--~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l 143 (355)
++...++-.++|. -|+...= .+--+. .+.+++.++++|+.+++|..|..+
T Consensus 40 ~~s~~~l~~al~~-lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKK-LPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 3666788899999 7886665 333333 778889999999999999888654
No 74
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=48.83 E-value=2.5e+02 Score=28.44 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=41.3
Q ss_pred HHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 94 LYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 94 l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
++..++-..++.++|.-.-| -=.++....+...++++.+.+.....|.++.++|.+..-
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 55567788999999985555 333444444556667888888777777777777777664
No 75
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=46.29 E-value=1.8e+02 Score=29.42 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHhHHH--HHHhhhccCCCC-------CCcchhHHHHH
Q 018509 185 MVVPLLAGILSALRRVIARRVSLKIT-LKRRLHAITITSATCFLFPVA--MWDLIIGSKSSS-------SVDLPFSAWAF 254 (355)
Q Consensus 185 v~Lli~a~~l~a~~~~~sRr~s~~~g-g~kRL~Alt~l~stv~L~P~a--l~~~~~~~~s~~-------s~~~~~~~w~~ 254 (355)
+.++..|.++++.-....-+.=+|+| .+|-.--||++.+--+..-.. +.+-+---.+.+ ....+.. |.+
T Consensus 166 i~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~-~~y 244 (330)
T KOG1583|consen 166 IALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSM-WVY 244 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHH-HHH
Confidence 44788888888888777777777776 666666777776643211100 000000001111 1112222 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhh----hHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Q 018509 255 LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMV----AGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEA 323 (355)
Q Consensus 255 l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV----~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~ 323 (355)
++..++..|+=--+-..+...-+|-..-+| -|++-++.-....-+|+++. -+|++++.+|-..-
T Consensus 245 ----Ll~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h-~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 245 ----LLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH-WLGAALVFFGTLLF 312 (330)
T ss_pred ----HHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH-HHHHHHHHHHHHHH
Confidence 233445544333333355555555543332 37777777667777899999 99999999987643
No 76
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.05 E-value=70 Score=32.56 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=33.9
Q ss_pred HhhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 113 LAEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 113 L~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
|.+.+=+..++++..+++||.+..-..|.++.+.|...+.
T Consensus 96 LGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 96 LGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 3555555778889999999999889999999999999887
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=41.85 E-value=1.5e+02 Score=25.45 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHHHHHHhcccccchhhHHH--hhhhhh-HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Q 018509 94 LYFILWGKGLKSCGPVRALL--AEYSGA-VLGVLSAVLYGRRGHVWKKVGGLIAILASFYF 151 (355)
Q Consensus 94 l~~lLwf~gL~~cGplrsiL--~e~s~~-Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~l 151 (355)
+.+.+.-.++|.- |+...= .+--++ .+++.+.++++|+.++.|..|..+.+.|++.+
T Consensus 42 ~sf~~Ls~alk~i-pvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 42 LSFYLLSLALKTI-PLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 4444555778873 665554 444455 67777889999999999999999988888876
No 78
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=40.53 E-value=37 Score=33.55 Aligned_cols=72 Identities=11% Similarity=0.018 Sum_probs=57.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 81 QMVPSVINGGITALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 81 Qw~~il~~gvv~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
-|..+...|+.+|+=..+-|.-..+-||+.-+. -..--..+.+.|+++.++..+++|..|.++.+.|...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 455667778888888888888899999997666 555555677779999999999999999999988876655
No 79
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=39.34 E-value=1.9e+02 Score=25.52 Aligned_cols=68 Identities=21% Similarity=0.047 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcc
Q 018509 248 PFSAWAFLSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEA 323 (355)
Q Consensus 248 ~~~~w~~l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~ 323 (355)
|..++......+.+.++||+...+.-+|-+.++.+.. ..+.+.|+--++.. ++| ++=+..++.=+.|.
T Consensus 30 ~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~---ga~iG~IvG~f~~~----p~G-~iiG~~~Ga~l~El 97 (140)
T PF04306_consen 30 WWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIW---GAIIGGIVGFFVLP----PLG-LIIGPFLGAFLGEL 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHhh----HHH-HHHHHHHHHHHHHH
Confidence 3433344777788999999999999999998887765 34444444322222 346 33334444444455
No 80
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=38.05 E-value=22 Score=34.08 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCCCCC-C-CCCCCCCCCcc
Q 018509 286 LMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHGRKD-T-FQKPDLSNGML 344 (355)
Q Consensus 286 ~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~~~~-~-~~~~~~s~~~~ 344 (355)
.+....|.|+-..+ ||||.+|+..-|-.|.+++.-||. + -.-.-=|||-|
T Consensus 127 K~amLIClIIIAVL---------fLICT~LfLSTVVLANKVS~LKrskQ~gKRqpRSNGDF 178 (227)
T PF05399_consen 127 KMAMLICLIIIAVL---------FLICTLLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDF 178 (227)
T ss_pred chhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccce
Confidence 46667787764433 799999999999999888833331 1 11233468777
No 81
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=36.58 E-value=4.7e+02 Score=26.54 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=32.9
Q ss_pred cccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 018509 209 ITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-LSTTLFGIILIFYVDAMAEERLHM 278 (355)
Q Consensus 209 ~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-l~~~vF~~VL~fyvesi~~~rl~~ 278 (355)
.+.+||+.++.++.+++.++....... . |...+.. ++..++.-++. ..|+++.+.++.
T Consensus 64 ~~~~~~~l~~~~l~~~~~~~~~~~~~~--------f---~~~~~~~~l~~~~~~p~~p-l~dsi~~~~~~~ 122 (400)
T PF03825_consen 64 FGSAKRILALLSLLSALALLLLAFSSS--------F---WWLFVIMLLFSFFFSPTMP-LSDSIALSYLGD 122 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcc--------H---HHHHHHHHHHHHHHccHHH-HHHHHHHHHccc
Confidence 347899999999988887765542111 1 2222222 33333332332 568998887764
No 82
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.51 E-value=2.4e+02 Score=25.85 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=47.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhhhcccccCcc------------------hhhhhHHHHHHHHHHhcccc------
Q 018509 250 SAWAF-LSTTLFGIILIFYVDAMAEERLHMVFSSPR------------------HLMVAGGCIIVMEMVYKMDF------ 304 (355)
Q Consensus 250 ~~w~~-l~~~vF~~VL~fyvesi~~~rl~~~~ss~r------------------~~lV~~~c~iv~e~~~~~~~------ 304 (355)
..|.- ....++.+-.||......-+|-+.+|.+.+ ..+.|+..+++.|++++.|+
T Consensus 49 ~f~~v~~lvtlli~~aD~vA~~~g~kr~GgsK~a~~gAliG~iiG~Fi~lP~~gii~gPfiga~v~ElI~~r~~~~A~k~ 128 (160)
T COG2839 49 VFWLVMALVTLLIIAADYVANIWGVKRYGGSKAAVWGALIGLIIGIFISLPPFGIILGPFIGAFVGELIERRDFLLAVKA 128 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHhheeecCccceehhhhHHHHHHHHHHHhhHHHHHHH
Confidence 33544 555566677888888888899999987665 34578999999999999988
Q ss_pred ---chHHHHHHH
Q 018509 305 ---SLIGFIICS 313 (355)
Q Consensus 305 ---sl~g~lic~ 313 (355)
|+.|||.+.
T Consensus 129 g~Gslvg~L~g~ 140 (160)
T COG2839 129 GLGSLVGFLVGS 140 (160)
T ss_pred HHHHHHHHHHHH
Confidence 556666555
No 83
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=31.42 E-value=1.1e+02 Score=27.93 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcccccchhhHHH-hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHH
Q 018509 92 TALYFILWGKGLKSCGPVRALL-AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILAS 148 (355)
Q Consensus 92 ~~l~~lLwf~gL~~cGplrsiL-~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igv 148 (355)
++.--++-..-+||.+++.-.. ...+..+.+++|.+++|+..+..+..|+.+.+.|+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~ 219 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence 3344445677789999995555 77777799999999999999999999988887765
No 84
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.65 E-value=1.4e+02 Score=24.96 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH---HHHHHHHhcccccchhh
Q 018509 56 CCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA---LYFILWGKGLKSCGPVR 110 (355)
Q Consensus 56 l~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~---l~~lLwf~gL~~cGplr 110 (355)
+..+..+++|.++.=-.++.++...-|+.+=..+++.. +.-++-|.+-+||+|-.
T Consensus 19 IiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~~C~~~~ 76 (91)
T PHA02680 19 VLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYRKCSGSM 76 (91)
T ss_pred HHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 34445556665554333334566677776655554433 33367777777999843
No 85
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=27.31 E-value=2.6e+02 Score=27.12 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=66.1
Q ss_pred HHHHHhcccccchh-hHHHhhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHhhcccccccccCCccCCcchHhh
Q 018509 96 FILWGKGLKSCGPV-RALLAEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFLSQGWATETSSPFSFKDSLDAEL 174 (355)
Q Consensus 96 ~lLwf~gL~~cGpl-rsiL~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lLs~gw~~~~~~pf~lfd~d~~~~ 174 (355)
+-++.-+|+...|- .+.+++-|.+..-+++-..+|++-..-|....++++-|++.+- --||..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia-------------y~DN~~--- 130 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA-------------YADNEH--- 130 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE-------------eccchh---
Confidence 44556677777776 5555888888666778888999888889888888888877664 356521
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHhhhhhh
Q 018509 175 RTEQVLGMKEMVVPLLAGILSALRRVIARRVSL 207 (355)
Q Consensus 175 ~~~~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~ 207 (355)
..++.|+ .--+.+.+..++|++..|++--
T Consensus 131 -a~e~iGi---~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 131 -ADEIIGI---ACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred -hhhhhhH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 1123333 2466788999999999999863
No 86
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=21.39 E-value=4.3e+02 Score=28.45 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCCCcchhHHHHH-----HHHHHHHH
Q 018509 188 PLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSSVDLPFSAWAF-----LSTTLFGI 262 (355)
Q Consensus 188 li~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s~~~~~~~w~~-----l~~~vF~~ 262 (355)
=+.|+..+.+++... +.-|.-. .|--++-.++.+.++.||.++++. .+ +..|+. +.-+.-+|
T Consensus 339 Ni~aN~vsp~~D~s~--l~Pk~in-~krg~liaA~ial~~~PW~l~~s~------s~----f~~~L~~yg~~LgpiaGVm 405 (497)
T COG1953 339 NIAANIVSPGYDLSA--LFPKYIN-IKRGGLIAAIIALLICPWNLLESS------SS----FTTFLGSYGVFLGPIAGVM 405 (497)
T ss_pred hHHhccCChHHHHHH--hcccccc-hhhhHHHHHHHHHHHcChHHHcCc------cH----HHHHHHHHHHHHHHHHHHH
Confidence 344555555565442 1111112 344578888888999999999871 12 333433 33344457
Q ss_pred HHHHHHHHHHhhhhcc
Q 018509 263 ILIFYVDAMAEERLHM 278 (355)
Q Consensus 263 VL~fyvesi~~~rl~~ 278 (355)
+.|||+=-=.+-+++.
T Consensus 406 iaDyflirk~~~~v~~ 421 (497)
T COG1953 406 IADYFLVRKGRLNLDE 421 (497)
T ss_pred HHHHHhhhcCccChHH
Confidence 8888875433333433
No 87
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=21.22 E-value=5.9e+02 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Q 018509 285 HLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIY 321 (355)
Q Consensus 285 ~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~ 321 (355)
.+.-.+.-.+.-+..+- |.+.|+++..++-
T Consensus 130 ~~~~~iG~~L~t~y~l~-------fe~~silLLvAmI 159 (198)
T PRK06638 130 GNTKAIGILLFTDYLLP-------FELASVLLLVAMV 159 (198)
T ss_pred ccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444544444443332 5666666655544
No 88
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=20.83 E-value=2.3e+02 Score=23.81 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHH---HHHHHHHhcc-cccchh
Q 018509 58 LVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITA---LYFILWGKGL-KSCGPV 109 (355)
Q Consensus 58 ~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~---l~~lLwf~gL-~~cGpl 109 (355)
.+..+++|.++.--. .++.+..-|+.+=..+++.. ..-++-|.+- |||+|-
T Consensus 21 LL~~aCIfAfidfsK-~~~~~~~~wRalSii~FI~giil~lG~~i~s~ygr~C~~s 75 (92)
T PF05767_consen 21 LLIAACIFAFIDFSK-NTKPTDYTWRALSIICFILGIILTLGIVIFSMYGRYCRPS 75 (92)
T ss_pred HHHHHHHHHhhhhcc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 344455555544333 33357777887666665544 2333445555 999983
No 89
>PRK07668 hypothetical protein; Validated
Probab=20.58 E-value=8.1e+02 Score=24.00 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=66.3
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCC---CcchhHHHHH
Q 018509 178 QVLGMKEMVVPLLAGILSALRRVIARRVSLKITLKRRLHAITITSATCFLFPVAMWDLIIGSKSSSS---VDLPFSAWAF 254 (355)
Q Consensus 178 ~~lG~~Dv~Lli~a~~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P~al~~~~~~~~s~~s---~~~~~~~w~~ 254 (355)
+++|..=+.++.+.+..+..++.+. +.+-.|+.+.+..+....-.+...... ....-.+.+ .+.|.+....
T Consensus 109 ~iig~~~~~~l~i~~~~~~~r~~~f-----k~~~~~~~~i~~~~~~~~p~~l~i~i~-~l~k~yp~~~~~ls~~qs~il~ 182 (254)
T PRK07668 109 QLIGYPISLILTIIGLIFLLRMASF-----KSKLTEKWFLIIYLVILIPMLLIVAIM-FLNKWYGTPMLQFTQMQSYILA 182 (254)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCceEEEecchHHHHHH
Confidence 5777775545555666666555554 444455555555544333222211111 111112221 1123343333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccC
Q 018509 255 LSTTLFGIILIFYVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLD 327 (355)
Q Consensus 255 l~~~vF~~VL~fyvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~ 327 (355)
....+..+++.+|++. ++ ......+|..-+.+.+.+-.+|.-. + +.--++++.+.+.....+
T Consensus 183 ~~~~i~~~~~~~~~~~----~~-----~~l~l~~p~~i~~~f~~~~~~~~~~-~-~~~~~~~y~~~~~l~~~~ 244 (254)
T PRK07668 183 GLIFLITVIINIYFLG----WF-----GLLYLIIPLSIMFLFKYFNSEDVVP-M-IFQIIILYGSLYVLMFIE 244 (254)
T ss_pred HHHHHHHHHHHHHHHh----hH-----HHHHHHHHHHHHHHHHHccccchhH-H-HHHHHHHHHHHHHHHHHH
Confidence 5556666777777763 33 5566778877777766665555432 2 344445555555444333
Done!