Query 018509
Match_columns 355
No_of_seqs 71 out of 73
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.5 8.3E-05 2.8E-09 64.0 4.8 89 256-345 34-127 (137)
2 3b5d_A Multidrug transporter E 95.9 0.025 8.7E-07 46.2 7.6 69 256-325 34-103 (110)
3 2i68_A Protein EMRE; transmemb 94.1 0.12 4E-06 44.2 6.9 65 88-152 35-102 (137)
4 3b5d_A Multidrug transporter E 93.2 0.37 1.3E-05 39.2 8.3 64 88-152 35-102 (110)
5 2jln_A MHP1; hydantoin, transp 6.1 1.7E+03 0.059 21.6 9.0 47 284-331 406-455 (501)
6 1exe_A Transcription factor 1; 5.5 9.9E+02 0.034 18.1 5.5 56 268-333 7-63 (99)
7 3o7q_A L-fucose-proton symport 4.9 1.6E+03 0.054 19.8 9.2 36 193-229 306-341 (438)
8 2jp3_A FXYD domain-containing 4.6 4.8E+02 0.016 19.7 2.5 16 139-154 24-39 (67)
9 4ev6_A Magnesium transport pro 4.5 1.3E+03 0.046 21.0 6.3 47 222-268 284-333 (339)
10 3j1z_P YIIP, cation efflux fam 4.3 1.9E+03 0.064 19.8 7.5 45 190-234 54-99 (306)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.50 E-value=8.3e-05 Score=64.03 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCcc-hhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccccCCCC----
Q 018509 256 STTLFGIILIFYVDAMAEERLHMVFSSPR-HLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSLDHGR---- 330 (355)
Q Consensus 256 ~~~vF~~VL~fyvesi~~~rl~~~~ss~r-~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~~~~~---- 330 (355)
...++..++.||..+.+-++++.+++.+. ..+.|.+++++..++++|++|+.+ ++|.++++.||......+++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~-~~Gi~LIi~GV~ll~~~~~~~~~~~ 112 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA-IIGMMLICAGVLIINLLSRSTPHEF 112 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C-HHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 45677889999999999999999999998 799999999999999999999999 999999999999765433222
Q ss_pred CCCCCCCCCCCCccc
Q 018509 331 KDTFQKPDLSNGMLG 345 (355)
Q Consensus 331 ~~~~~~~~~s~~~~~ 345 (355)
+..-+..|+||..+.
T Consensus 113 ~~~v~~~~~~~~~~~ 127 (137)
T 2i68_A 113 EAYVEQKLISEEDLN 127 (137)
T ss_dssp ---------------
T ss_pred ccchhhhhcCHHHhh
Confidence 123355667765543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.86 E-value=0.025 Score=46.20 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCcc-hhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Q 018509 256 STTLFGIILIFYVDAMAEERLHMVFSSPR-HLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATS 325 (355)
Q Consensus 256 ~~~vF~~VL~fyvesi~~~rl~~~~ss~r-~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~ 325 (355)
...++...+.||..+.+-++++.+.+.+- -..-|.+.+++..++++|++|..+ ++|..+++.||.....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~-~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA-IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHHhc
Confidence 35566788999999999999999999887 588999999999999999999999 9999999999997754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=94.05 E-value=0.12 Score=44.25 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHH-HHHHHHHhcccccchhhHHH--hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 88 NGGITA-LYFILWGKGLKSCGPVRALL--AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 88 ~gvv~~-l~~lLwf~gL~~cGplrsiL--~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
.+++.. +...+|..++|..++-.+.- ....|++..+++.++++|+.++.|..|+.+.+.|++.+-
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344444 88999999999976665544 466777888889999999999999999999999999885
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=93.21 E-value=0.37 Score=39.18 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHH-HHHHHHHHhcccccchhhHHH---hhhhhhHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHh
Q 018509 88 NGGIT-ALYFILWGKGLKSCGPVRALL---AEYSGAVLGVLSAVLYGRRGHVWKKVGGLIAILASFYFL 152 (355)
Q Consensus 88 ~gvv~-~l~~lLwf~gL~~cGplrsiL---~e~s~~Vl~~Ls~lf~g~~~~~~k~rG~~l~~igvl~lL 152 (355)
.+++. ++...+|..++|. .|+...- ...+++...+++.++++|+.++.|..|..+.+.|++.+-
T Consensus 35 ~~~~~~~~~~~~~~~al~~-~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh-CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44444 4888999999997 6775543 466777888889999999999999999999999998884
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=6.10 E-value=1.7e+03 Score=21.60 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=20.8
Q ss_pred chhhhhHHHHHHHHHH--hccccc-hHHHHHHHHHHhhhhhcccccCCCCC
Q 018509 284 RHLMVAGGCIIVMEMV--YKMDFS-LIGFIICSLILGFGIYEATSLDHGRK 331 (355)
Q Consensus 284 r~~lV~~~c~iv~e~~--~~~~~s-l~g~lic~~ll~~gv~~~t~~~~~~~ 331 (355)
..|...+.+-++-..+ ...|++ +.|+ +-+.+++.......+...+|+
T Consensus 406 g~n~~a~~a~~~G~~~~~~~~~~~~~~g~-~va~v~Y~~l~~~~~~~~~~~ 455 (501)
T 2jln_A 406 GVNWVALAVYAVALAVSFLTPDLMFVTGL-IAALLLHIPAMRWVAKTFPLF 455 (501)
T ss_dssp TBCHHHHHHHHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHHHHTTTSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhCchhhhhc
Confidence 3555554444433322 234566 4563 344455555443333323444
No 6
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=5.51 E-value=9.9e+02 Score=18.13 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccc-CCCCCCC
Q 018509 268 VDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIGFIICSLILGFGIYEATSL-DHGRKDT 333 (355)
Q Consensus 268 vesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g~lic~~ll~~gv~~~t~~-~~~~~~~ 333 (355)
++.+++ +.+.++.-....+-.++-+|.-++--|+++.+.| +|.++...- .|..++|
T Consensus 7 i~~ia~-~~~lsk~~~~~~l~~~~~~i~~~L~~G~~V~l~g---------fG~F~v~~r~aR~grNP 63 (99)
T 1exe_A 7 IKAIAQ-DTGLTQVSVSKMLASFEKIITETVAKGDKVQLTG---------FLNIKPVARQARKGFNP 63 (99)
T ss_dssp HHHHHH-HHCSCCTTHHHHHHHHHHHHHHHHHHTCCCCBTT---------TBCCCCCCCCCCCCCCS
T ss_pred HHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHCCCeEEECC---------ceEEEEEEecceeeECC
Confidence 455653 5778888888888899999999999999999988 677755532 2444444
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=4.92 E-value=1.6e+03 Score=19.84 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHHHHHHHHhH
Q 018509 193 ILSALRRVIARRVSLKITLKRRLHAITITSATCFLFP 229 (355)
Q Consensus 193 ~l~a~~~~~sRr~s~~~gg~kRL~Alt~l~stv~L~P 229 (355)
+....-+...-+++.+. |+||+..+..+++++.++.
T Consensus 306 ~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHH
Confidence 33444455556666666 6777776666666555443
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.60 E-value=4.8e+02 Score=19.70 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHhhc
Q 018509 139 VGGLIAILASFYFLSQ 154 (355)
Q Consensus 139 rG~~l~~igvl~lLs~ 154 (355)
.+++++++|++.++|.
T Consensus 24 fA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 24 FGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcC
Confidence 4567777777777744
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=4.48 E-value=1.3e+03 Score=21.05 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHhhhccCCC-CCCcch-hHHHHH-HHHHHHHHHHHHHH
Q 018509 222 SATCFLFPVAMWDLIIGSKSS-SSVDLP-FSAWAF-LSTTLFGIILIFYV 268 (355)
Q Consensus 222 ~stv~L~P~al~~~~~~~~s~-~s~~~~-~~~w~~-l~~~vF~~VL~fyv 268 (355)
+-|+++.|+.++..++|=+=+ -+...| ...|.. +.|++.+.++.+|.
T Consensus 284 iit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~f 333 (339)
T 4ev6_A 284 MVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIF 333 (339)
T ss_dssp HHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHH
Confidence 345577888887777663322 111123 333444 55555555555543
No 10
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=4.29 E-value=1.9e+03 Score=19.80 Aligned_cols=45 Identities=9% Similarity=-0.036 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcc-cchhHHHHHHHHHHHHHhHHHHHH
Q 018509 190 LAGILSALRRVIARRVSLKIT-LKRRLHAITITSATCFLFPVAMWD 234 (355)
Q Consensus 190 ~a~~l~a~~~~~sRr~s~~~g-g~kRL~Alt~l~stv~L~P~al~~ 234 (355)
..++...+.+...|+-..+.. |-.|...++.++..++++-.+.+.
T Consensus 54 s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i 99 (306)
T 3j1z_P 54 ASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLL 99 (306)
T ss_dssp HHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666665554444 888988888888887777665443
Done!