Query 018509
Match_columns 355
No_of_seqs 71 out of 73
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018509.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018509hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1imta1 g.3.10.1 (A:1-36) Inte 13.2 8.6 0.00062 24.1 -1.7 13 98-110 23-35 (36)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 12.1 84 0.0061 18.4 2.7 20 53-72 8-27 (30)
3 d1q90l_ f.23.24.1 (L:) PetL su 11.5 58 0.0042 19.4 1.8 19 305-323 6-24 (32)
4 d1ppjw_ f.23.14.1 (W:) Subunit 5.3 2.6E+02 0.019 19.0 3.3 15 193-207 5-19 (62)
5 d2phcb1 b.62.1.4 (B:86-217) Un 5.2 92 0.0067 24.1 0.9 16 155-170 93-108 (132)
6 d1exea_ a.55.1.1 (A:) Transcri 3.8 6.5E+02 0.047 17.4 5.5 41 267-308 6-46 (99)
7 d3cx5i1 f.23.14.1 (I:4-58) Sub 3.7 2.6E+02 0.019 18.5 2.2 14 195-208 1-14 (55)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.4 1.1E+03 0.077 19.3 8.2 57 33-99 13-69 (248)
9 d1erya_ a.10.1.1 (A:) ER-11 {E 3.0 1.8E+02 0.013 17.7 0.7 8 105-112 18-25 (39)
10 d1qapa2 d.41.2.1 (A:8-129) Qui 2.8 2.9E+02 0.021 20.2 2.0 23 103-125 97-121 (122)
No 1
>d1imta1 g.3.10.1 (A:1-36) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=13.18 E-value=8.6 Score=24.13 Aligned_cols=13 Identities=46% Similarity=1.055 Sum_probs=11.3
Q ss_pred HHHhcccccchhh
Q 018509 98 LWGKGLKSCGPVR 110 (355)
Q Consensus 98 Lwf~gL~~cGplr 110 (355)
+|..++|.|.|+.
T Consensus 23 lW~r~lR~CtPlG 35 (36)
T d1imta1 23 LWIKSVRVCTPVG 35 (36)
T ss_dssp SSCTTCEEEEECB
T ss_pred hhhhhceeeccCC
Confidence 6899999999974
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.07 E-value=84 Score=18.42 Aligned_cols=20 Identities=25% Similarity=0.735 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 018509 53 FIFCCLVPSSILFLLLQKPW 72 (355)
Q Consensus 53 f~Fl~~l~ss~~~l~~qkP~ 72 (355)
|+|.|.+...++-..+++|-
T Consensus 8 ~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 67777777666667778875
No 3
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=11.50 E-value=58 Score=19.40 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHhhhhhcc
Q 018509 305 SLIGFIICSLILGFGIYEA 323 (355)
Q Consensus 305 sl~g~lic~~ll~~gv~~~ 323 (355)
|..|++|+++.+-.|+|..
T Consensus 6 syvglligal~~tlgiylg 24 (32)
T d1q90l_ 6 SYVGLLIGALVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999853
No 4
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.27 E-value=2.6e+02 Score=19.00 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhh
Q 018509 193 ILSALRRVIARRVSL 207 (355)
Q Consensus 193 ~l~a~~~~~sRr~s~ 207 (355)
+.+.+|+++.||-++
T Consensus 5 l~~~lYn~lfrRnSt 19 (62)
T d1ppjw_ 5 LTARLYSLLFRRTST 19 (62)
T ss_dssp HHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHhhhH
Confidence 456789999999876
No 5
>d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.22 E-value=92 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.4
Q ss_pred ccccccccCCccCCcc
Q 018509 155 GWATETSSPFSFKDSL 170 (355)
Q Consensus 155 gw~~~~~~pf~lfd~d 170 (355)
||+.|...|..+||.+
T Consensus 93 GW~iiGrtp~~~fd~~ 108 (132)
T d2phcb1 93 GWRIIGRIPLRTFNPG 108 (132)
T ss_dssp CSEEEEECCSCCBCTT
T ss_pred CceEEEEechhhcCCC
Confidence 5999999999999975
No 6
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=3.76 E-value=6.5e+02 Score=17.42 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHhhhhcccccCcchhhhhHHHHHHHHHHhccccchHH
Q 018509 267 YVDAMAEERLHMVFSSPRHLMVAGGCIIVMEMVYKMDFSLIG 308 (355)
Q Consensus 267 yvesi~~~rl~~~~ss~r~~lV~~~c~iv~e~~~~~~~sl~g 308 (355)
.++.+++ +.+.++......+-.++-.|.-++--++++.+.|
T Consensus 6 li~~ia~-~~~ls~~~~~~~~~~~~~~i~~~L~~g~~V~l~g 46 (99)
T d1exea_ 6 LIKAIAQ-DTGLTQVSVSKMLASFEKIITETVAKGDKVQLTG 46 (99)
T ss_dssp HHHHHHH-HHCSCCTTHHHHHHHHHHHHHHHHHHTCCCCBTT
T ss_pred HHHHHHH-hhCCCHHHHHHHHHHHHHHHHHHHhcCCcEEEee
Confidence 3566654 6888888888888889999999999999999998
No 7
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.66 E-value=2.6e+02 Score=18.53 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhhhh
Q 018509 195 SALRRVIARRVSLK 208 (355)
Q Consensus 195 ~a~~~~~sRr~s~~ 208 (355)
+++|+++.||-++-
T Consensus 1 stiY~~lfrRnSv~ 14 (55)
T d3cx5i1 1 SSLYKTFFKRNAVF 14 (55)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred ChHHHHHHHhhhHH
Confidence 36788888888763
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.38 E-value=1.1e+03 Score=19.28 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHHhHhhhhccCCchhhHHHHHHHHHHHHHHHHhcCCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 018509 33 IWSVYSMYRYLSQTGVSVILFIFCCLVPSSILFLLLQKPWKGRPLLNTQMVPSVINGGITALYFILW 99 (355)
Q Consensus 33 ~~~i~~~y~~l~~~p~~lv~f~Fl~~l~ss~~~l~~qkP~~g~~l~~~Qw~~il~~gvv~~l~~lLw 99 (355)
+..+|.......+ -.-.+..++..+...+.++++.|+. .=.|.+..|++..+.+.++
T Consensus 13 a~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~vy~s~r~--------~p~kyi~PG~~~l~~Fvi~ 69 (248)
T d2r6gf1 13 LLVGYLVVLMYAQ--GEYLFAITTLILSSAGLYIFANRKA--------YAWRYVYPGMAGMGLFVLF 69 (248)
T ss_dssp HHHHHTHHHHHGG--GCHHHHHHHHHHHHHHHHHHSSSCC--------TTHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHc--chHHHHHHHHHHHHheEEEEEccCc--------cceehhhhHHHHHHHHHHH
Confidence 3344444433344 4555666666677777788887765 1236688899988666655
No 9
>d1erya_ a.10.1.1 (A:) ER-11 {Euplotes raikovi [TaxId: 5938]}
Probab=3.05 E-value=1.8e+02 Score=17.74 Aligned_cols=8 Identities=38% Similarity=1.082 Sum_probs=5.8
Q ss_pred ccchhhHH
Q 018509 105 SCGPVRAL 112 (355)
Q Consensus 105 ~cGplrsi 112 (355)
||||+--+
T Consensus 18 ycgpliei 25 (39)
T d1erya_ 18 YCGPLIEI 25 (39)
T ss_dssp HCGGGHHH
T ss_pred ccchHHHH
Confidence 79998543
No 10
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.83 E-value=2.9e+02 Score=20.24 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=17.6
Q ss_pred ccccchhhHHH-hhhhhh-HHHHHH
Q 018509 103 LKSCGPVRALL-AEYSGA-VLGVLS 125 (355)
Q Consensus 103 L~~cGplrsiL-~e~s~~-Vl~~Ls 125 (355)
++..||.+++| +|-.-. ++..+|
T Consensus 97 ~~i~G~a~~IL~~ER~~LN~lqrlS 121 (122)
T d1qapa2 97 FELQGPARVLLTGERTALNFVQTLS 121 (122)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHhc
Confidence 46679999999 887776 666665
Done!