BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018510
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 10 VPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXX 63
V V+ LA++ ++++P YIRP+++ I+D L K P ID++
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 64 XXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
L A +WG L+NHG+ L+++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
G+G + +L+W D FF P R ++PK P + Y+ + LA +
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 180 ISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQ 236
++ L ++ + + + E L M++NYYP CPQP +G+ H+D ALT +L
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242
Query: 237 INEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 243 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 297 TFHLVKYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKAVFSRELHE 341
F D V P P +++ ++PA F R + +F +E E
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 16/347 (4%)
Query: 10 VPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXX 63
V V+ LA++ ++++P YIRP+++ I+D L K P ID++
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 64 XXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
L A +WG L+NHG+ L+++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
G+G + +L+W D FF P R ++PK P + Y+ + LA +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 180 ISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQ 236
++ L ++ + + + E L M++NYYP CPQP +G+ H+D ALT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 237 INEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 244 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 297 TFHLVKYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKAVFSRELHE 341
F D V P P +++ ++PA F R + +F +E E
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 180/347 (51%), Gaps = 16/347 (4%)
Query: 10 VPSVQELAENPMVAVPPRYIRPEQDAPVISDNTLISK------FPVIDMQXXXXXXXXXX 63
V V+ LA++ ++++P YIRP+++ I+D L K P ID++
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 64 XXA--NLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
L A +WG L+NHG+ L ++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 120 GFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNL 179
G+G + +L+W D FF P R ++PK P + Y+ + LA +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 180 ISRMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQ 236
++ L ++ + + + E L ++NYYP CPQP +G+ H+D ALT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 237 INEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ + +IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 244 -NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 297 TFHLVKYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKAVFSRELHE 341
F D V P P ++ ++PA F R + +F +E E
Sbjct: 303 VFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 128/247 (51%), Gaps = 10/247 (4%)
Query: 71 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEE 130
AC WGFF+LVNHG+ + D V+K + + E++ K +EG V +E
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQAEV 81
Query: 131 QRLDWGDLFFMTTLPVHLRKPHLFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIK 190
DW FF+ LP+ P L R+ ++ + LA L+ + + L ++
Sbjct: 82 TDXDWESTFFLKHLPIS--NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLE 139
Query: 191 DEEVREFFENGLQ---SMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKK 247
++ F +++ YPPCP+P + GL H+D+ + +L Q ++ GLQ+ K
Sbjct: 140 KGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK 199
Query: 248 DGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEV 307
DG+W V P ++ +VN+GD LEVITNG Y S+ HR + + R S+A+F+ D +
Sbjct: 200 DGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
Query: 308 GPAPSLI 314
PAP+L+
Sbjct: 260 YPAPALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 21/275 (7%)
Query: 75 WGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEEQRLD 134
+GF L ++ + A +D + FF L +E KK+Y G G+ F V + D
Sbjct: 33 YGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFGVETAKGAD 91
Query: 135 WGDL--FFMTTL---PVHLRKPH----LFPKLPPSLRDTLEVYSTEVNALAMNLISRMAK 185
DL F+ P H + H ++P P+ + + ++ ++ +A
Sbjct: 92 HYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIAT 151
Query: 186 VLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQI 245
L ++ + + ++G +R+ +YPP P+ + H D +T+LL E GL++
Sbjct: 152 YLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEG-GLEV 210
Query: 246 -KKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATF------ 298
+DG+W P+ P P ++NIGD LE +TN V PS HR VVN ER + +
Sbjct: 211 LDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTPFFL 269
Query: 299 HLVKYDGEVGPAPSLITEKTPALF-RRVTTEEFLK 332
H D E+ + +T + P + +T +EFL+
Sbjct: 270 HFAS-DYEIKTLQNCVTAENPDRYPESITADEFLQ 303
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 122/280 (43%), Gaps = 49/280 (17%)
Query: 71 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEV-EGFGQAFVVSE 129
+ RE GF L NH + LV+++ E Q FFN E K + + E +GF A +
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFN---SEAKNEFXFNRETHDGFFPASISET 77
Query: 130 EQRLDWGDLFFMTTLPVHLRKPHLFP--KLPPSLRDTLEVYSTEVNALAMNLISRMAKVL 187
+ D+ H++P ++P SLR + Y + N LA L+ +
Sbjct: 78 AKGHTVKDI---------KEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETY- 127
Query: 188 HIKDEEVR--------EFFENGLQSM-RMNYYPPCP--QPGKVMGLTPHSDSVALTILLQ 236
+E++ E N +++ R+ +YPP + + H D +T+L
Sbjct: 128 --SPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPT 185
Query: 237 INEAEGLQIK-KDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAV----VNSEQE 291
NE GLQ+K KDG W V I+NIGD L+ ++G +PS HR + + +
Sbjct: 186 ANEP-GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKS 244
Query: 292 RLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFL 331
R+S+ F + P PS++ L R T + +L
Sbjct: 245 RISLPLF--------LHPHPSVV------LSERYTADSYL 270
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 47/277 (16%)
Query: 68 LDFACREWGFFQLVNHGVSLALVDKVKKEI------QEFFNLSMEEKKK----------Y 111
+D A R+ GFF VNHG+++ + + KE +E ++L++ K Y
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYY 91
Query: 112 WQYPGE--VEGFG--QAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLP--PSLRDTL 165
PG+ VE F + R+ P H + +++P P +D
Sbjct: 92 LSIPGKKAVESFCYLNPNFTPDHPRI-------QAKTPTH--EVNVWPDETKHPGFQDFA 142
Query: 166 EVYSTEVNALAMNLISRMAKVLHIKDEEVREFF--ENGLQSMRMNYYP---PCPQP---- 216
E Y +V L+ L+ A L ++ F ++ L S+ + YP P P+
Sbjct: 143 EQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKT 202
Query: 217 ---GKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVIT 273
G + H D +T+L Q N + LQ++ + + +++N G + +T
Sbjct: 203 AADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLT 261
Query: 274 NGVYPSIEHRAV-VNSEQERLSIATFHLVKYDGEVGP 309
N Y + HR VN+ ER S+ F + YD + P
Sbjct: 262 NNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 47/277 (16%)
Query: 68 LDFACREWGFFQLVNHGVSLALVDKVKKEI------QEFFNLSMEEKKK----------Y 111
+D A R+ GFF VNHG+++ + + KE +E ++L++ K Y
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYY 91
Query: 112 WQYPGE--VEGFG--QAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKLP--PSLRDTL 165
PG+ VE F + R+ P H + +++P P +D
Sbjct: 92 LSIPGKKAVESFCYLNPNFTPDHPRI-------QAKTPTH--EVNVWPDETKHPGFQDFA 142
Query: 166 EVYSTEVNALAMNLISRMAKVLHIKDEEVREFF--ENGLQSMRMNYYP---PCPQP---- 216
E Y +V L+ L+ A L ++ F ++ L S+ + YP P P+
Sbjct: 143 EQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKT 202
Query: 217 ---GKVMGLTPHSDSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVIT 273
G + H D +T+L Q N + LQ++ + + +++N G + +T
Sbjct: 203 AADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLT 261
Query: 274 NGVYPSIEHRAV-VNSEQERLSIATFHLVKYDGEVGP 309
N Y + HR VN+ ER S+ F + YD + P
Sbjct: 262 NNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 99 EFFNLSMEEKKKYW-QYPGEVEGFGQAFVVSEEQRLDWGDLFFMTTLPVHLRKPHLFPKL 157
E NL ME+ Y+ G+ F + EE DWG +T + P +FP L
Sbjct: 84 EMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTVSSASTKGPSVFP-L 142
Query: 158 PPSLRDT 164
PS + T
Sbjct: 143 APSSKST 149
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 227 DSVALTILLQINEAEGLQIKKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVV 286
D + + IL ++ + ++ ++DG W P+RP A V+ ++ ++ V S V
Sbjct: 272 DGLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSVL-SKPCSVTV 330
Query: 287 NSEQERLSIATFHLV 301
SE + + L
Sbjct: 331 ASEASKKKVDVIDLT 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,123,714
Number of Sequences: 62578
Number of extensions: 398789
Number of successful extensions: 1111
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 12
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)