BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018511
         (355 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
          Length = 497

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 131/290 (45%), Gaps = 29/290 (10%)

Query: 73  KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132
           K+E+   DL  W  +NG     V   E  +  E+   +    A+ D++A +    VP  L
Sbjct: 73  KREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRKL 126

Query: 133 VVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRGR 189
           + T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L  +   
Sbjct: 127 LXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE--- 181

Query: 190 GQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY-- 247
                ++PL + E E+ YL  +    ++  + +   R+Y      +F    + Q +P+  
Sbjct: 182 ----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHAN 230

Query: 248 DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKXXXXXX 305
            +P  ++FT+E ++ A  +V +    +     +R   AL+PL       +          
Sbjct: 231 KLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNLE 290

Query: 306 XXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV 355
                    + ++AGE I ++ G + N++ +I+ GF  ++N +DR+ +++
Sbjct: 291 DDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKL 340


>pdb|1MZH|A Chain A, Qr15, An Aldolase
 pdb|1MZH|B Chain B, Qr15, An Aldolase
          Length = 225

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 211 SPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCV 270
           + T  ++ E  E ++    ELD VW +  S F+   YD   E    EIF++   AV   +
Sbjct: 67  NKTSVKVKEAVEAVRDGAQELDIVWNL--SAFKSEKYDFVVEELK-EIFRETPSAVHKVI 123

Query: 271 V 271
           V
Sbjct: 124 V 124


>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
           Aminotransferase From Listeria Innocua Clip11262.
 pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
           Aminotransferase From Listeria Innocua Clip11262
          Length = 363

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 17  IRPPHHPLSIASTISISVIRDPNFGSSLRL-----VRRKNRFSIRVSSSDTLVAGSREVV 71
           +RPP +  SI   ++I  I+D  F    R      +++   F+ R        A    V+
Sbjct: 250 VRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL 309

Query: 72  SKKEEDLGDLKSWMHKNG 89
                + G + S++ KNG
Sbjct: 310 IDLGIEAGTIFSYLEKNG 327


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,928,103
Number of Sequences: 62578
Number of extensions: 371115
Number of successful extensions: 881
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)