Query 018511
Match_columns 355
No_of_seqs 122 out of 1204
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 1.2E-29 2.6E-34 241.9 13.2 248 76-344 7-273 (466)
2 KOG1337 N-methyltransferase [G 99.9 3.7E-28 8E-33 246.8 11.6 254 73-355 44-304 (472)
3 PF00856 SET: SET domain; Int 99.6 8.1E-16 1.8E-20 131.1 10.7 65 260-328 94-162 (162)
4 smart00317 SET SET (Su(var)3-9 97.9 9.9E-06 2.1E-10 65.4 4.1 44 283-327 69-116 (116)
5 KOG2589 Histone tail methylase 96.2 0.0045 9.7E-08 60.2 3.5 47 281-329 191-238 (453)
6 KOG1085 Predicted methyltransf 92.9 0.09 2E-06 49.8 3.2 52 285-336 330-385 (392)
7 KOG1079 Transcriptional repres 92.4 0.1 2.3E-06 54.5 3.2 39 291-329 668-710 (739)
8 KOG1080 Histone H3 (Lys4) meth 89.0 0.4 8.7E-06 53.2 3.9 40 291-330 942-985 (1005)
9 KOG4442 Clathrin coat binding 88.7 0.42 9.1E-06 50.4 3.7 65 258-329 170-238 (729)
10 smart00317 SET SET (Su(var)3-9 79.7 2.5 5.3E-05 33.4 3.7 27 111-137 12-38 (116)
11 COG2940 Proteins containing SE 77.8 1.3 2.8E-05 45.6 1.9 40 291-330 408-451 (480)
12 KOG2461 Transcription factor B 60.9 7.4 0.00016 39.2 3.0 35 306-340 121-155 (396)
13 KOG1083 Putative transcription 58.0 11 0.00025 41.9 4.0 29 302-330 1267-1296(1306)
14 KOG1082 Histone H3 (Lys9) meth 58.0 8.5 0.00019 38.2 2.9 40 291-330 275-322 (364)
15 TIGR02059 swm_rep_I cyanobacte 40.0 40 0.00086 27.2 3.5 27 305-331 73-99 (101)
16 PF08666 SAF: SAF domain; Int 32.2 27 0.00059 24.7 1.4 14 112-125 3-16 (63)
17 PF10281 Ish1: Putative stress 31.5 45 0.00098 21.6 2.2 16 78-93 6-21 (38)
18 KOG1338 Uncharacterized conser 30.4 6.8 0.00015 39.1 -2.7 69 281-352 269-342 (466)
19 PF09652 Cas_VVA1548: Putative 24.3 47 0.001 26.4 1.5 41 77-132 5-46 (93)
20 KOG2084 Predicted histone tail 22.4 1.2E+02 0.0025 30.3 4.4 60 281-341 199-265 (482)
21 COG2086 FixA Electron transfer 20.0 75 0.0016 30.1 2.2 74 59-142 111-185 (260)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.2e-29 Score=241.93 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=197.9
Q ss_pred hcHHHHHHHHHhCC-CCCC-CcEEeecCCCCC-CCCceeeEEEccCCCCCCeEEEcCCCCccChhhhc--C-cchHH-Hh
Q 018511 76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVL--G-NETIA-EL 148 (355)
Q Consensus 76 ~~~~~l~~Wl~~~G-~~~~-~v~i~~~~~~~g-~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~~~~--~-~~~i~-~l 148 (355)
+-.+.|+.|++..+ ...+ +|.+.+.+.-.+ .| +|++|+++|++|+.++.+|++.+++..+.. + -|+.. .+
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G---~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~ 83 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAG---AGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL 83 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcc---cceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence 34789999999988 6554 888877665432 23 489999999999999999999999976532 2 13322 34
Q ss_pred hccCCCChhHHHHHHHHHHhhcCCCCCcHHHHHHhcccCCCCccccCcccccCHhHHhccCCCchHHHHHHHHHHHHHHH
Q 018511 149 LTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY 228 (355)
Q Consensus 149 l~~~~l~~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~~~~~~~~Pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~~ 228 (355)
| ++++.|..|++.|++|...+.+|+|.||++.+|++. ..++|+||+++|+++|..+....+..+....|.++|
T Consensus 84 L--ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~ 156 (466)
T KOG1338|consen 84 L--NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDF 156 (466)
T ss_pred h--hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHH
Confidence 4 578999999999999998777799999999999986 589999999999997766666666777888899888
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCCCcchhhHHHhheeeecceeecccc-----------ccccccccccCCCccccCCCC
Q 018511 229 NELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSK 297 (355)
Q Consensus 229 ~~l~~~~~~~~~l~~~~~~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~-----------~~~~~~~LvPl~D~l~NH~~~ 297 (355)
..+.. ++.+.+|..+ ..+++|+|..+++++.+-+|.+.-. .-....+|+|..| +.||+..
T Consensus 157 i~~i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad-~lNhd~~ 227 (466)
T KOG1338|consen 157 IFVIQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIAD-FLNHDGL 227 (466)
T ss_pred HHHHH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhh-hhccchh
Confidence 87654 4455566443 3589999999999999988865311 0123578999999 5799876
Q ss_pred -CceEEEeeCCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCCcccC
Q 018511 298 -CKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDE 344 (355)
Q Consensus 298 -~~~~~~~~~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YGFv~~ 344 (355)
+|+.+.++++++.|+|+|+|++||||++.||.++|. |++||.+.-
T Consensus 228 k~nanl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c 273 (466)
T KOG1338|consen 228 KANANLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALC 273 (466)
T ss_pred hcccceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhcc
Confidence 899999999999999999999999999999999998 777776654
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.95 E-value=3.7e-28 Score=246.83 Aligned_cols=254 Identities=35% Similarity=0.501 Sum_probs=188.9
Q ss_pred cchhcHHHHHHHHHhCCCCCCCcEEeecCCCCCCCCceeeEEEccCCCCCCeEEEcCCCCccChhhhcCcchHHHhhccC
Q 018511 73 KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTN 152 (355)
Q Consensus 73 ~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~~~~~~~~i~~ll~~~ 152 (355)
...+..+.+..|.+..|....+..+ ..... + .+++.+..++..++.+..+|....+..........
T Consensus 44 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 109 (472)
T KOG1337|consen 44 ASSENIKSLKFWLTGNGLSSSKSSL-PGNDI---D--EWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYNDL-------- 109 (472)
T ss_pred CCccccccceeccccCCcchhhhcc-ccccc---c--ccchhhhhhhhhhhhhccCCchhhhccccccCccc--------
Confidence 3346666777777777765542222 11110 1 12455666666666666665555555444332111
Q ss_pred CCChhHHHHHHHHHHhhcCCCCCcHHHHHHhcccCCCCccccCcccccCHhHHhccCCCchHHHHHHHHHHHHHHHHHHH
Q 018511 153 KLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELD 232 (355)
Q Consensus 153 ~l~~~~~Lal~Ll~E~~~g~~S~W~pYl~~LP~~~~~~~~~~~~Pl~Ws~~el~~L~gt~l~~~~~~~~~~i~~~~~~l~ 232 (355)
...+++++++.+...+..|+|++|+..||.. .++|++|...++..|.+++....+..++..++..+.++.
T Consensus 110 ---~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~-------~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (472)
T KOG1337|consen 110 ---LPIALALFLLLEWAHGEISKWKPYISTLPSQ-------YNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELL 179 (472)
T ss_pred ---cHHHHHHHHHHhhhccccccchhhhhhchhh-------cCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHH
Confidence 1168999999999988889999999999995 589999999999999999999999988888888777766
Q ss_pred HHHHHhhhhhhcCCCCCCCCCcchhhHHHhheeeecceeecccc------ccccccccccCCCccccCCCCC-ceEEEee
Q 018511 233 TVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKC-KAMLAAV 305 (355)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~------~~~~~~~LvPl~D~l~NH~~~~-~~~~~~~ 305 (355)
.++......+.... .+.++++.|.||+.+|.||+|+.+.. +-....+|+|++| |.||+++. ...++..
T Consensus 180 ~~~~~~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D-~~NH~~~~~~~~~~~~ 254 (472)
T KOG1337|consen 180 EVLQSHPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLID-LLNHSPEVIKAGYNQE 254 (472)
T ss_pred HHHHhccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHH-hhccCchhccccccCC
Confidence 55433222222211 23389999999999999999986433 1235689999999 68999876 4556667
Q ss_pred CCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCCcccCCCCCCeEEeeC
Q 018511 306 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEV 355 (355)
Q Consensus 306 ~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YGFv~~~Np~D~v~l~~ 355 (355)
++.+.+++.++|++||||||+||+++|++||++|||+.++||+|.+.|++
T Consensus 255 d~~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~ 304 (472)
T KOG1337|consen 255 DEAVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKL 304 (472)
T ss_pred CCcEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEee
Confidence 77999999999999999999999999999999999999999999998864
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.65 E-value=8.1e-16 Score=131.11 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHhheeeecceeeccccccccccccccCCCccccCCCCCceEEEee----CCeEEEEEcCCCCCCCeeecccC
Q 018511 260 KQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAV----DDAVQLVVDRPYKAGESIVVWCG 328 (355)
Q Consensus 260 ~wA~~~V~SRa~~~~~~~~~~~~~LvPl~D~l~NH~~~~~~~~~~~----~~~~~l~a~r~i~~GeEI~i~YG 328 (355)
.+.+..+..+...... ....+|+|++| |+||+..+|+.+... ++.++++|.|+|++|||||++||
T Consensus 94 ~~~~~~~~~~~~~~~~---~~~~~l~p~~d-~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 94 SWTRSDFSSRSFSEDD---RDGIALYPFAD-MLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp HHHHHEEEEEEETTEE---EEEEEEETGGG-GSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccceeeecccccccc---ccccccCcHhH-heccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 3444444444443222 24689999999 689998777766554 78999999999999999999998
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.93 E-value=9.9e-06 Score=65.43 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.1
Q ss_pred ccccCCCccccCCCCCceEEEe--eCC--eEEEEEcCCCCCCCeeeccc
Q 018511 283 ALVPLGPPLLAYSSKCKAMLAA--VDD--AVQLVVDRPYKAGESIVVWC 327 (355)
Q Consensus 283 ~LvPl~D~l~NH~~~~~~~~~~--~~~--~~~l~a~r~i~~GeEI~i~Y 327 (355)
.+.|+++ ++||+..+|+.+.. .++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~-~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIAR-FINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHH-eeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 3899999 78999888876543 333 59999999999999999998
No 5
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=96.16 E-value=0.0045 Score=60.16 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=41.1
Q ss_pred ccccccCCCccccCCCCCceEEEeeC-CeEEEEEcCCCCCCCeeecccCC
Q 018511 281 RFALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGP 329 (355)
Q Consensus 281 ~~~LvPl~D~l~NH~~~~~~~~~~~~-~~~~l~a~r~i~~GeEI~i~YG~ 329 (355)
...|=|.+ |+||+-.+|+.+...+ +...+++.|||++||||+--||.
T Consensus 191 qLwLGPaa--fINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs 238 (453)
T KOG2589|consen 191 QLWLGPAA--FINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS 238 (453)
T ss_pred hheeccHH--hhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecc
Confidence 35577776 7899998899888765 89999999999999999999997
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=92.90 E-value=0.09 Score=49.81 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=38.1
Q ss_pred ccCCCccccCCCCCce--EE--EeeCCeEEEEEcCCCCCCCeeecccCCCChHhhh
Q 018511 285 VPLGPPLLAYSSKCKA--ML--AAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLL 336 (355)
Q Consensus 285 vPl~D~l~NH~~~~~~--~~--~~~~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL 336 (355)
-|.+-=|+||+.-.|. .+ .....-+.++|.++|.+|||++..||+.+.+-++
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~ 385 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIA 385 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHh
Confidence 3444348999964443 22 2334689999999999999999999998766554
No 7
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=92.41 E-value=0.1 Score=54.52 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=32.5
Q ss_pred cccCCCCCce----EEEeeCCeEEEEEcCCCCCCCeeecccCC
Q 018511 291 LLAYSSKCKA----MLAAVDDAVQLVVDRPYKAGESIVVWCGP 329 (355)
Q Consensus 291 l~NH~~~~~~----~~~~~~~~~~l~a~r~i~~GeEI~i~YG~ 329 (355)
|+||+.++|+ .+...++.+-+.|.|+|++|||+|..|+=
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 7899987664 34456789999999999999999999873
No 8
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=88.95 E-value=0.4 Score=53.19 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=31.2
Q ss_pred cccCCCC--CceEEEe--eCCeEEEEEcCCCCCCCeeecccCCC
Q 018511 291 LLAYSSK--CKAMLAA--VDDAVQLVVDRPYKAGESIVVWCGPQ 330 (355)
Q Consensus 291 l~NH~~~--~~~~~~~--~~~~~~l~a~r~i~~GeEI~i~YG~~ 330 (355)
|+||+-+ |.+.+.. ++..++++|.|+|.+||||+..|---
T Consensus 942 ~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~ 985 (1005)
T KOG1080|consen 942 FINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFP 985 (1005)
T ss_pred eeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccc
Confidence 7899865 5455443 33599999999999999999999643
No 9
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=0.42 Score=50.38 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=43.8
Q ss_pred hHHHhheeeecceeeccccccccccccccCCCccccCCCCCceE---EEee-CCeEEEEEcCCCCCCCeeecccCC
Q 018511 258 IFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAM---LAAV-DDAVQLVVDRPYKAGESIVVWCGP 329 (355)
Q Consensus 258 ~f~wA~~~V~SRa~~~~~~~~~~~~~LvPl~D~l~NH~~~~~~~---~~~~-~~~~~l~a~r~i~~GeEI~i~YG~ 329 (355)
.+.++|.|...+...++.-..+. ++= |+||+-++|+. |... .-.+-+.+.+.|++||||+..|+-
T Consensus 170 ~~kh~Yfm~L~~~e~IDAT~KGn------laR-FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 170 GIKHYYFMALQGGEYIDATKKGN------LAR-FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred CCceEEEEEecCCceecccccCc------HHH-hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 35667777766666554211111 122 78999887764 6543 347778999999999999998863
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=79.71 E-value=2.5 Score=33.40 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.0
Q ss_pred eeEEEccCCCCCCeEEEcCCCCccChh
Q 018511 111 HYVAASEDLQAGDAAFSVPNSLVVTLE 137 (355)
Q Consensus 111 ~Gl~A~~dI~~ge~li~IP~~~~ls~~ 137 (355)
+||+|+++|++|+.|+..+-.++....
T Consensus 12 ~gl~a~~~i~~g~~i~~~~g~~~~~~~ 38 (116)
T smart00317 12 WGVRATEDIPKGEFIGEYVGEIITSEE 38 (116)
T ss_pred EEEEECCccCCCCEEEEEEeEEECHHH
Confidence 489999999999999999887776544
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=77.82 E-value=1.3 Score=45.63 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=31.7
Q ss_pred cccCCCCCceEEEe--eCC--eEEEEEcCCCCCCCeeecccCCC
Q 018511 291 LLAYSSKCKAMLAA--VDD--AVQLVVDRPYKAGESIVVWCGPQ 330 (355)
Q Consensus 291 l~NH~~~~~~~~~~--~~~--~~~l~a~r~i~~GeEI~i~YG~~ 330 (355)
++||+..+|..... ..+ .+..++.+||++||||++.||..
T Consensus 408 ~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 408 FINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred eeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 57999877765542 323 77888999999999999999974
No 12
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=60.87 E-value=7.4 Score=39.15 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCC
Q 018511 306 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 340 (355)
Q Consensus 306 ~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YG 340 (355)
...+-+++.|+|++|||+.++||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46888999999999999999999988888877776
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=58.05 E-value=11 Score=41.88 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.2
Q ss_pred EEeeC-CeEEEEEcCCCCCCCeeecccCCC
Q 018511 302 LAAVD-DAVQLVVDRPYKAGESIVVWCGPQ 330 (355)
Q Consensus 302 ~~~~~-~~~~l~a~r~i~~GeEI~i~YG~~ 330 (355)
|...+ -.+.++|.|||.+||||+..|..+
T Consensus 1267 wSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1267 WSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ccccceeeeeeeecCCCCCCceEEEecccc
Confidence 54432 377789999999999999999765
No 14
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=58.03 E-value=8.5 Score=38.15 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=31.5
Q ss_pred cccCCCCCceEEEe---e-----CCeEEEEEcCCCCCCCeeecccCCC
Q 018511 291 LLAYSSKCKAMLAA---V-----DDAVQLVVDRPYKAGESIVVWCGPQ 330 (355)
Q Consensus 291 l~NH~~~~~~~~~~---~-----~~~~~l~a~r~i~~GeEI~i~YG~~ 330 (355)
|+||+-.+|..+.. + --.+.+.|.++|++|+|++..||..
T Consensus 275 finHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 275 FINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKA 322 (364)
T ss_pred cccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccc
Confidence 67999887766532 1 1367889999999999999999964
No 15
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=39.99 E-value=40 Score=27.24 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCCCeeecccCCCC
Q 018511 305 VDDAVQLVVDRPYKAGESIVVWCGPQP 331 (355)
Q Consensus 305 ~~~~~~l~a~r~i~~GeEI~i~YG~~~ 331 (355)
....+.+...+.|..||+|.++|-+-+
T Consensus 73 s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 73 SNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred cccEEEEEecccccCCCEEEEEeeCCC
Confidence 345899999999999999999997643
No 16
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=32.19 E-value=27 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.8
Q ss_pred eEEEccCCCCCCeE
Q 018511 112 YVAASEDLQAGDAA 125 (355)
Q Consensus 112 Gl~A~~dI~~ge~l 125 (355)
-++|++||++|+.|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999988
No 17
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=31.48 E-value=45 Score=21.60 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCCCCCC
Q 018511 78 LGDLKSWMHKNGLPPC 93 (355)
Q Consensus 78 ~~~l~~Wl~~~G~~~~ 93 (355)
..+|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3689999999998765
No 18
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.38 E-value=6.8 Score=39.10 Aligned_cols=69 Identities=12% Similarity=-0.089 Sum_probs=50.7
Q ss_pred ccccccCCCccccCCC-CCceE--EEeeCCeEEEEEcCCCCCCCeeecccCCCChHhhhhhCC-cccCC-CCCCeEE
Q 018511 281 RFALVPLGPPLLAYSS-KCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDED-NPYDRLV 352 (355)
Q Consensus 281 ~~~LvPl~D~l~NH~~-~~~~~--~~~~~~~~~l~a~r~i~~GeEI~i~YG~~~N~~LL~~YG-Fv~~~-Np~D~v~ 352 (355)
..+++|+.+| ++-.. -++.. +....+...+++.|.| |.|.-+.|+...+.++...|| |+--. -|++.+-
T Consensus 269 ~ka~c~gihm-~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~l 342 (466)
T KOG1338|consen 269 TKALCVGIHM-VWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKL 342 (466)
T ss_pred hhhccceeee-ecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceee
Confidence 5789999995 45433 23433 3445678889999999 999999999999999999999 54333 5665543
No 19
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=24.35 E-value=47 Score=26.44 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhCCCCCCCcEEeecCCCCCCCCceeeEEEccCCCCCCeEE-EcCCCC
Q 018511 77 DLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF-SVPNSL 132 (355)
Q Consensus 77 ~~~~l~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~li-~IP~~~ 132 (355)
+.+..++|++++|+.++.+.- . .-..+|++||+|+ ++|..+
T Consensus 5 RH~GAieW~~~qg~~iD~~v~-H--------------ld~~~i~~GD~ViGtLPvhL 46 (93)
T PF09652_consen 5 RHPGAIEWAKQQGIQIDHFVD-H--------------LDPADIQPGDVVIGTLPVHL 46 (93)
T ss_pred ecccHHHHHHHhCCCcceeec-c--------------CCHHHccCCCEEEEeCcHHH
Confidence 456778999999987763321 1 1246778887766 456554
No 20
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=22.43 E-value=1.2e+02 Score=30.34 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=45.9
Q ss_pred ccccccCCCccccCCCCCceEEEeeCCeEEEEEcCCCCCCC-eeecccCCC--C----hHhhhhhCCc
Q 018511 281 RFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGE-SIVVWCGPQ--P----NSKLLINYGF 341 (355)
Q Consensus 281 ~~~LvPl~D~l~NH~~~~~~~~~~~~~~~~l~a~r~i~~Ge-EI~i~YG~~--~----N~~LL~~YGF 341 (355)
..+|.|..= ++||+--+|......+..+.+.+...+.+++ +++++|-.. + ...|...|.|
T Consensus 199 ~~~l~~~~~-~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 199 GRGLFPGSS-LFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeeecccch-hcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 567888887 7899988887766677788888888888877 999999863 2 2455556556
No 21
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=20.03 E-value=75 Score=30.14 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=50.1
Q ss_pred CccccccCCccccccchhcHHHHHHHHHhCCC-CCCCcEEeecCCCCCCCCceeeEEEccCCCCCCeEEEcCCCCccChh
Q 018511 59 SSDTLVAGSREVVSKKEEDLGDLKSWMHKNGL-PPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLE 137 (355)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~Wl~~~G~-~~~~v~i~~~~~~~g~Grg~~Gl~A~~dI~~ge~li~IP~~~~ls~~ 137 (355)
+.|+++.|.++.++.+.+....+-+|+-=--+ ...+|++.+ | | -+.+++++..|...+++|.-+++|..
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~d-----g-~----~v~v~R~le~g~e~~e~~LPaVvtv~ 180 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVD-----G-G----KVTVERELEGGLETVEAPLPAVVTVD 180 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEcC-----C-C----eEEEEEEcCCceEEEEccCCEEEEec
Confidence 46677777777666666666666666633221 224444411 1 2 38999999999999999999999988
Q ss_pred hhcCc
Q 018511 138 RVLGN 142 (355)
Q Consensus 138 ~~~~~ 142 (355)
.-.+-
T Consensus 181 ~~~n~ 185 (260)
T COG2086 181 LRINE 185 (260)
T ss_pred cccCC
Confidence 65443
Done!