BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018515
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/346 (84%), Positives = 323/346 (93%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AV
Sbjct: 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAV 60
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
T+LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGT
Sbjct: 61 TSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGT 120
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKL
Sbjct: 121 AALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKL 180
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
RGSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EKLEGK+FS+++A
Sbjct: 181 RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DYFVFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+LS DESYQSRDLEKV
Sbjct: 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKV 300
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSEL 347
SQQLAK YDAKVQP+TL+PKQVGNMYT +HNKHS+L
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDL 346
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/346 (84%), Positives = 322/346 (93%)
Query: 2 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAV 61
AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS AV
Sbjct: 1 AKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAV 60
Query: 62 TNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGT 121
T+LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNA YGGT
Sbjct: 61 TSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNAXYGGT 120
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKL 181
AAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+ ML+GPDAP+ FESKL
Sbjct: 121 AALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKL 180
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
RGSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EKLEGK+FS+++A
Sbjct: 181 RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDA 240
Query: 242 DYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDLEKV 301
DYFVFHSPYNKLVQKSFARLL+NDF+RNASS+DEAAKEK P+S+LS DESYQSRDLEKV
Sbjct: 241 DYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKV 300
Query: 302 SQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSEL 347
SQQLAK YDAKVQP+TL+PKQVGNMYT +HNKHS+L
Sbjct: 301 SQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDL 346
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/331 (55%), Positives = 234/331 (70%), Gaps = 5/331 (1%)
Query: 4 NVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTN 63
+VGI+A++IYFP V Q LE +DG GKYTIGLGQ M FC++ ED+ S+ +T V N
Sbjct: 24 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQN 83
Query: 64 LLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAA 123
L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNA YGGTAA
Sbjct: 84 LMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYGGTAA 143
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESKLRG 183
+FN VNW+ESSSWDGRY LVV D AVYA G ARPTGG AV +L+GP+AP+ FE LRG
Sbjct: 144 VFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRG 203
Query: 184 SHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSL 238
+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+L
Sbjct: 204 THMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTL 263
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQSRDL 298
++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD+
Sbjct: 264 NDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDV 323
Query: 299 EKVSQQLAKPLYDAKVQPSTLIPKQVGNMYT 329
EK + + L+ K + S L+ Q GNMYT
Sbjct: 324 EKAFMKASSELFSQKTKASLLVSNQNGNMYT 354
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/334 (52%), Positives = 234/334 (70%), Gaps = 5/334 (1%)
Query: 1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTA 60
M K+VGILA+++YFP V Q LE ++ GKYT+GLGQ M FCS ED+ S+ LT
Sbjct: 2 MPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTV 61
Query: 61 VTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGG 120
V L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGG
Sbjct: 62 VQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 121 TAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVVMLVGPDAPVAFESK 180
TA+LFN NW+ESSSWDGRY +VVC D AVY G ARPTGGA AV ML+GP AP+A E
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERG 181
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQ 235
LRG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY K + K G +
Sbjct: 182 LRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRP 241
Query: 236 FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKLGPFSTLSGDESYQS 295
F+L + Y +FH+P+ K+VQKS ARL+FNDF+ +S + + L F L +++Y +
Sbjct: 242 FTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTN 301
Query: 296 RDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYT 329
+DL+K + ++ ++D K + S + GNMYT
Sbjct: 302 KDLDKALLKASQDMFDKKTKASLYLSTHNGNMYT 335
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 18/257 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + ACYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 116
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 227
Query: 242 DYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 228 DALAFHIPYTKMGKKAL 244
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 18/257 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + ACYG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 121
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 232
Query: 242 DYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 233 DALAFHIPYTKMGKKAL 249
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 18/257 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + CYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEGCYGATA 116
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 227
Query: 242 DYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 228 DALAFHIPYTKMGKKAL 244
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 81
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + A YG TA
Sbjct: 82 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 135
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 136 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 193
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + +++K G F ++
Sbjct: 194 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQ----SFAQVWDEHKKRTGLDF--ADY 246
Query: 242 DYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 247 DALAFHIPYTKMGKKAL 263
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 18/257 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNACYGGTA 122
L K D + I + VG+E+ ID+SK+ L ++ + F + + A YG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 121
Query: 123 ALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKL 181
L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 182 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNA 241
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--ADY 232
Query: 242 DYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 233 DALAFHIPYTKMGKKAL 249
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI + + PP + AL GK+ IG+GQ+ MA +D+++ + A +
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQI--FEKFGNTDIEGVDSTNAC-YGGT 121
L K D + I + VG+E+ ID+SK+ L ++ + F + + AC YG T
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACXYGAT 116
Query: 122 AALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESK 180
A L N V + + LVV D A Y PT GA AV MLV + + +
Sbjct: 117 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKE 174
Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSN 240
YDF++P YP+VDG LS Y+ + + + +++K G F ++
Sbjct: 175 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQS----FAQVWDEHKKRTGLDF--AD 227
Query: 241 ADYFVFHSPYNKLVQKSF 258
D FH PY K+ +K+
Sbjct: 228 YDALAFHIPYTKMGKKAL 245
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 24/279 (8%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + ACY T A
Sbjct: 63 ITDE--DKKKIGMVIVATES---AVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL 259
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 24/279 (8%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + A Y T A
Sbjct: 63 ITDE--DKKKIGMVIVATES---AVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL 259
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 31/283 (10%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 65 LEKYKIDPKQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKFGNTDIEGVDSTNACYG 119
+ D K+IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 120 GTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFE 178
T A+ +++ + LV+ TD+A Y PT GA AV M++ + +
Sbjct: 114 ATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 179 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281
++ FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERL 259
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 24/279 (8%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 65 LEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEG-VDSTNACYGGTAA 123
+ D K+IG + V +E+ + K +QI G + A Y T A
Sbjct: 63 ITDE--DKKKIGMVIVATES---AVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 124 LFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFESKLR 182
+ +++ + LV+ TD+A Y PT GA AV M++ + + ++
Sbjct: 118 IQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNEDA 175
Query: 183 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNAD 242
++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL++
Sbjct: 176 VAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SLADFA 228
Query: 243 YFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281
FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 229 SLCFHVPFTKMGKKALESIIDN--------ADETTQERL 259
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 31/283 (10%)
Query: 5 VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNL 64
+GI ++ Y P V L K+ IG+GQ MA +D++SM A ++
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 65 LEKYKIDPKQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKFGNTDIEGVDSTNACYG 119
+ D K+IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 120 GTAALFNCVNWVESSSWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVVMLVGPDAPVAFE 178
T A+ +++ + LV+ TD+A Y PT GA AV M++ + +
Sbjct: 114 ATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 179 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSL 238
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++Y K +GK SL
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 239 SNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEAAKEKL 281
++ FH P+ K+ +K+ ++ N DE +E+L
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN--------ADETTQERL 259
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 29 GASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK 88
G K++ GL ++ +DV++++ + +L D ++I + + +E+ +D+
Sbjct: 61 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 118
Query: 89 SKSIKTFLMQIF--EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCT 146
SK+ ++ + + F + + ACY TAAL VE D R LV+ +
Sbjct: 119 SKAGAVYVHSLLGIQPFARS----FEMKEACYSATAALNYAKLHVEKHP-DTRV-LVLAS 172
Query: 147 DSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVD 205
D A Y G P T GA ++ MLV D + + DF++PN + P V+
Sbjct: 173 DIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVN 231
Query: 206 GKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY--FVFHSPYNKLVQKSFARLL 262
G S YL L T + ++Y+K +F +S D+ F FH P+ KL K F +++
Sbjct: 232 GMYSTKQYLDMLKTTW----AEYQK----RFDVSLTDFAAFCFHLPFPKLALKGFNKIM 282
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 21/239 (8%)
Query: 29 GASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDK 88
G K++ GL ++ +DV++++ + +L D ++I + + +E+ +D+
Sbjct: 27 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 84
Query: 89 SKSIKTFLMQIF--EKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCT 146
SK+ ++ + + F + E ++ CY TAAL VE D R LV+ +
Sbjct: 85 SKAGAVYVHSLLGIQPFARS-FEMKEA--XCYSATAALNYAKLHVEKHP-DTRV-LVLAS 139
Query: 147 DSAVYAEG-PARPTGGAAAVVMLVGPDAPVAFESKLRGSHMSHAYDFYKPNLASEYPVVD 205
D A Y G P T GA ++ MLV D + + DF++PN + P V+
Sbjct: 140 DIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVN 198
Query: 206 GKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADY--FVFHSPYNKLVQKSFARLL 262
G S YL L T + ++Y+K +F +S D+ F FH P+ KL K F +++
Sbjct: 199 GMYSTKQYLDMLKTTW----AEYQK----RFDVSLTDFAAFCFHLPFPKLALKGFNKIM 249
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHJ|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 254 VQKSFARLLFNDFMRNASSVDEAAKEKLGPFS 285
V+++ +RL FN +++A V E A+E+ G F+
Sbjct: 243 VRRAVSRLYFNGEIQSAEKVREIARERFGRFA 274
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHN|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 254 VQKSFARLLFNDFMRNASSVDEAAKEKLGPFS 285
V+++ +RL FN +++A V E A+E+ G F+
Sbjct: 243 VRRAVSRLYFNGEIQSAEKVREIARERFGRFA 274
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 182 RGSHMSHAYDFYKPNLASEYPVV 204
RGSHM++A F+K N +++P V
Sbjct: 17 RGSHMANAITFFKLNTGAKFPSV 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,182,488
Number of Sequences: 62578
Number of extensions: 411148
Number of successful extensions: 919
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 32
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)