Query 018519
Match_columns 354
No_of_seqs 265 out of 1745
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 6E-87 1.3E-91 610.5 28.1 337 4-340 1-354 (363)
2 PLN02493 probable peroxisomal 100.0 1.7E-79 3.8E-84 591.8 33.2 346 3-348 2-363 (367)
3 PRK11197 lldD L-lactate dehydr 100.0 5E-77 1.1E-81 577.9 33.0 338 3-341 2-377 (381)
4 PLN02535 glycolate oxidase 100.0 5.6E-77 1.2E-81 575.1 31.8 343 2-347 3-361 (364)
5 TIGR02708 L_lactate_ox L-lacta 100.0 4.9E-76 1.1E-80 568.5 34.8 341 2-343 11-362 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 8E-76 1.7E-80 565.9 31.9 326 8-336 1-361 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 2.9E-75 6.3E-80 566.6 33.0 334 4-339 18-383 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 2.6E-74 5.6E-79 555.9 33.2 336 3-339 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 9.1E-73 2E-77 548.4 31.1 327 14-340 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 3.1E-71 6.7E-76 534.6 33.3 329 8-337 1-344 (344)
11 PLN02979 glycolate oxidase 100.0 2.7E-65 5.8E-70 489.3 30.3 304 45-348 43-362 (366)
12 COG1304 idi Isopentenyl diphos 100.0 5.9E-62 1.3E-66 470.0 25.6 333 7-344 1-353 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 1.1E-57 2.5E-62 435.3 33.8 299 8-336 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 1.6E-37 3.6E-42 299.4 24.8 273 38-336 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 5.6E-37 1.2E-41 298.2 25.1 281 40-343 27-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 1.3E-35 2.8E-40 286.9 24.4 279 41-341 21-331 (333)
17 PRK05458 guanosine 5'-monophos 100.0 2.6E-27 5.6E-32 226.4 25.6 254 42-340 6-314 (326)
18 TIGR01306 GMP_reduct_2 guanosi 100.0 2.8E-27 6.1E-32 225.3 23.6 256 42-341 3-312 (321)
19 TIGR01305 GMP_reduct_1 guanosi 99.9 1.7E-26 3.7E-31 218.3 21.6 256 41-337 8-329 (343)
20 PRK08649 inosine 5-monophospha 99.9 1.5E-25 3.2E-30 218.3 23.8 267 41-341 16-367 (368)
21 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 3.7E-26 8E-31 222.0 18.6 272 35-340 8-368 (369)
22 cd02808 GltS_FMN Glutamate syn 99.9 4.9E-24 1.1E-28 210.4 25.5 269 58-340 59-390 (392)
23 cd00381 IMPDH IMPDH: The catal 99.9 4.9E-24 1.1E-28 205.5 23.6 257 42-339 3-321 (325)
24 PRK06843 inosine 5-monophospha 99.9 1.1E-22 2.3E-27 199.2 22.3 256 41-337 10-381 (404)
25 COG0042 tRNA-dihydrouridine sy 99.9 1.6E-22 3.5E-27 194.5 20.5 250 65-341 4-287 (323)
26 PF00478 IMPDH: IMP dehydrogen 99.9 3.2E-22 6.9E-27 192.5 21.2 257 42-338 4-336 (352)
27 PRK10415 tRNA-dihydrouridine s 99.9 5E-22 1.1E-26 191.4 21.3 249 64-340 2-285 (321)
28 PRK05096 guanosine 5'-monophos 99.9 1.4E-21 3E-26 184.9 21.6 255 41-337 9-330 (346)
29 TIGR01037 pyrD_sub1_fam dihydr 99.9 2.2E-20 4.8E-25 178.6 22.8 237 61-337 1-298 (300)
30 PRK10550 tRNA-dihydrouridine s 99.9 1.3E-20 2.9E-25 180.5 21.1 239 72-338 1-277 (312)
31 TIGR00742 yjbN tRNA dihydrouri 99.9 1.5E-20 3.3E-25 180.5 21.4 238 73-340 2-280 (318)
32 TIGR00737 nifR3_yhdG putative 99.9 3.1E-20 6.7E-25 179.0 22.1 246 66-337 2-280 (319)
33 PRK07107 inosine 5-monophospha 99.8 5.7E-20 1.2E-24 186.0 20.3 122 216-337 291-472 (502)
34 PTZ00314 inosine-5'-monophosph 99.8 3.8E-19 8.3E-24 180.1 24.8 122 215-336 288-466 (495)
35 cd04739 DHOD_like Dihydroorota 99.8 9E-19 1.9E-23 169.2 25.2 239 60-337 1-302 (325)
36 PRK07259 dihydroorotate dehydr 99.8 2.5E-18 5.5E-23 164.4 25.4 239 60-337 1-298 (301)
37 PRK07565 dihydroorotate dehydr 99.8 1.7E-18 3.6E-23 168.0 24.2 240 60-338 2-305 (334)
38 PF01645 Glu_synthase: Conserv 99.8 4.3E-19 9.4E-24 172.0 19.9 246 68-329 62-368 (368)
39 PF01207 Dus: Dihydrouridine s 99.8 3.9E-20 8.4E-25 177.5 12.3 241 75-341 1-274 (309)
40 cd04740 DHOD_1B_like Dihydroor 99.8 6.6E-18 1.4E-22 161.1 25.6 236 62-336 1-294 (296)
41 TIGR01302 IMP_dehydrog inosine 99.8 9.7E-19 2.1E-23 175.8 20.6 136 200-335 256-449 (450)
42 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 1.5E-18 3.3E-23 174.6 21.3 122 216-337 273-456 (475)
43 cd02940 DHPD_FMN Dihydropyrimi 99.8 5.5E-18 1.2E-22 162.0 22.0 215 60-298 1-286 (299)
44 PRK05567 inosine 5'-monophosph 99.8 2.3E-18 5.1E-23 174.7 20.5 127 211-337 271-455 (486)
45 PRK11815 tRNA-dihydrouridine s 99.8 5.6E-18 1.2E-22 164.1 21.8 242 69-340 8-290 (333)
46 PLN02826 dihydroorotate dehydr 99.8 2.7E-17 5.9E-22 162.4 26.9 272 31-338 46-407 (409)
47 PRK08318 dihydropyrimidine deh 99.8 2.2E-17 4.8E-22 164.9 23.5 190 123-339 100-320 (420)
48 PLN02274 inosine-5'-monophosph 99.8 8.5E-18 1.8E-22 170.5 20.4 121 215-337 295-473 (505)
49 PLN02495 oxidoreductase, actin 99.8 4.3E-17 9.2E-22 159.6 23.0 252 56-339 6-337 (385)
50 COG0069 GltB Glutamate synthas 99.8 7.1E-17 1.5E-21 159.8 21.6 256 68-337 163-476 (485)
51 PRK05286 dihydroorotate dehydr 99.8 1.8E-16 3.9E-21 154.3 23.5 233 56-327 44-344 (344)
52 PRK02506 dihydroorotate dehydr 99.7 4.1E-16 8.9E-21 149.7 23.8 241 60-337 1-306 (310)
53 cd02911 arch_FMN Archeal FMN-b 99.7 1.6E-16 3.5E-21 146.5 17.2 192 73-298 1-228 (233)
54 TIGR03151 enACPred_II putative 99.7 4.2E-16 9.1E-21 149.4 20.1 183 64-300 6-197 (307)
55 PF03060 NMO: Nitronate monoox 99.7 2.8E-16 6E-21 152.2 18.9 186 64-299 6-225 (330)
56 COG0167 PyrD Dihydroorotate de 99.7 1E-15 2.2E-20 145.3 20.7 176 134-339 107-308 (310)
57 PRK07807 inosine 5-monophospha 99.7 1.5E-15 3.3E-20 153.1 22.9 125 213-337 271-458 (479)
58 cd04738 DHOD_2_like Dihydrooro 99.7 1.3E-15 2.7E-20 147.5 21.5 237 32-298 9-314 (327)
59 cd02801 DUS_like_FMN Dihydrour 99.7 5.3E-16 1.2E-20 142.4 18.0 199 73-298 1-218 (231)
60 PRK11750 gltB glutamate syntha 99.7 5.6E-16 1.2E-20 169.2 20.6 246 71-334 858-1165(1485)
61 cd02810 DHOD_DHPD_FMN Dihydroo 99.7 4.6E-15 1E-19 141.0 22.9 206 63-298 1-277 (289)
62 cd04741 DHOD_1A_like Dihydroor 99.7 4.6E-15 1E-19 141.5 22.0 223 63-323 1-294 (294)
63 KOG2335 tRNA-dihydrouridine sy 99.7 8.8E-16 1.9E-20 145.9 16.7 195 75-298 22-243 (358)
64 cd04743 NPD_PKS 2-Nitropropane 99.6 1.1E-13 2.5E-18 132.0 18.2 182 71-300 2-209 (320)
65 TIGR00736 nifR3_rel_arch TIM-b 99.6 8.4E-14 1.8E-18 127.7 16.2 153 123-298 68-225 (231)
66 COG2070 Dioxygenases related t 99.6 4.3E-14 9.2E-19 136.8 15.0 87 213-301 130-221 (336)
67 cd04742 NPD_FabD 2-Nitropropan 99.6 1.9E-13 4.2E-18 134.7 19.7 211 64-299 8-254 (418)
68 KOG2550 IMP dehydrogenase/GMP 99.6 1.1E-13 2.4E-18 132.6 16.1 122 216-337 299-476 (503)
69 cd04730 NPD_like 2-Nitropropan 99.5 5.1E-13 1.1E-17 123.1 19.6 187 71-306 2-198 (236)
70 TIGR01036 pyrD_sub2 dihydrooro 99.5 4.7E-13 1E-17 129.8 20.1 208 61-298 46-322 (335)
71 PF01180 DHO_dh: Dihydroorotat 99.5 9.7E-14 2.1E-18 132.5 13.8 224 61-323 2-295 (295)
72 TIGR02814 pfaD_fam PfaD family 99.5 6.5E-13 1.4E-17 131.7 18.3 211 64-299 13-259 (444)
73 KOG1436 Dihydroorotate dehydro 99.5 2E-12 4.4E-17 120.4 16.7 265 33-337 58-396 (398)
74 KOG2333 Uncharacterized conser 99.4 2.3E-11 5.1E-16 118.8 16.4 208 70-301 263-498 (614)
75 PRK01130 N-acetylmannosamine-6 99.2 2.4E-09 5.2E-14 98.0 17.8 172 91-297 26-206 (221)
76 PRK13523 NADPH dehydrogenase N 99.1 8.5E-09 1.8E-13 100.2 18.8 74 221-298 231-310 (337)
77 cd04722 TIM_phosphate_binding 99.0 1.1E-08 2.5E-13 89.9 15.5 185 74-294 1-200 (200)
78 cd04729 NanE N-acetylmannosami 99.0 3.2E-08 6.9E-13 90.5 18.2 81 216-298 129-211 (219)
79 cd02803 OYE_like_FMN_family Ol 99.0 2E-08 4.3E-13 97.1 17.5 75 222-298 233-316 (327)
80 cd04734 OYE_like_3_FMN Old yel 99.0 5.8E-08 1.3E-12 94.7 20.6 76 221-298 232-320 (343)
81 PF04131 NanE: Putative N-acet 98.9 3.3E-08 7.2E-13 87.1 14.4 165 92-298 3-178 (192)
82 cd02933 OYE_like_FMN Old yello 98.9 4.2E-07 9.1E-12 88.5 21.2 74 221-298 245-319 (338)
83 COG3010 NanE Putative N-acetyl 98.8 3.2E-07 7E-12 81.4 17.2 175 83-297 28-213 (229)
84 cd02932 OYE_YqiM_FMN Old yello 98.8 4.5E-07 9.7E-12 88.2 20.1 75 222-298 246-325 (336)
85 PRK04180 pyridoxal biosynthesi 98.8 3.6E-08 7.8E-13 92.2 10.7 81 216-298 127-239 (293)
86 cd02930 DCR_FMN 2,4-dienoyl-Co 98.8 7.5E-07 1.6E-11 87.3 20.0 76 221-298 228-311 (353)
87 cd02931 ER_like_FMN Enoate red 98.8 5.7E-07 1.2E-11 89.0 19.1 73 222-298 257-340 (382)
88 cd04727 pdxS PdxS is a subunit 98.8 2.9E-07 6.3E-12 85.9 15.4 81 216-298 118-230 (283)
89 PRK08255 salicylyl-CoA 5-hydro 98.8 1.7E-06 3.6E-11 93.1 23.3 75 221-298 642-722 (765)
90 cd04747 OYE_like_5_FMN Old yel 98.7 2.1E-06 4.6E-11 84.2 20.5 78 218-298 232-333 (361)
91 TIGR00343 pyridoxal 5'-phospha 98.7 6.1E-07 1.3E-11 83.8 15.1 81 216-298 120-233 (287)
92 cd04735 OYE_like_4_FMN Old yel 98.7 3.1E-07 6.7E-12 90.0 13.8 77 222-298 240-318 (353)
93 PRK10605 N-ethylmaleimide redu 98.6 4.5E-06 9.8E-11 82.1 20.7 71 223-298 255-326 (362)
94 cd02929 TMADH_HD_FMN Trimethyl 98.6 5E-06 1.1E-10 82.0 20.3 78 218-298 236-324 (370)
95 PRK14024 phosphoribosyl isomer 98.6 1.9E-07 4.1E-12 86.7 9.3 83 213-298 140-227 (241)
96 cd00331 IGPS Indole-3-glycerol 98.6 4.2E-06 9.2E-11 76.3 17.8 79 217-298 128-206 (217)
97 PRK09140 2-dehydro-3-deoxy-6-p 98.6 5.3E-06 1.2E-10 75.2 18.0 160 129-298 15-184 (206)
98 COG1902 NemA NADH:flavin oxido 98.6 4.2E-06 9E-11 82.0 18.4 77 220-298 240-323 (363)
99 KOG1799 Dihydropyrimidine dehy 98.6 2.5E-07 5.5E-12 87.7 8.9 81 251-340 344-424 (471)
100 cd04731 HisF The cyclase subun 98.6 4.3E-07 9.4E-12 84.2 10.3 78 218-298 150-228 (243)
101 PRK06552 keto-hydroxyglutarate 98.5 7.1E-06 1.5E-10 74.8 17.8 162 126-298 15-188 (213)
102 PRK01033 imidazole glycerol ph 98.5 3E-07 6.5E-12 86.3 8.7 80 217-299 152-232 (258)
103 cd04733 OYE_like_2_FMN Old yel 98.5 2E-06 4.4E-11 83.8 14.4 74 221-298 240-327 (338)
104 cd04728 ThiG Thiazole synthase 98.5 6.5E-07 1.4E-11 82.1 9.2 76 218-297 132-208 (248)
105 PRK13125 trpA tryptophan synth 98.5 2.2E-05 4.7E-10 73.1 19.2 82 218-300 140-221 (244)
106 cd04732 HisA HisA. Phosphorib 98.4 1.2E-06 2.5E-11 80.7 10.1 78 218-298 147-224 (234)
107 PRK00278 trpC indole-3-glycero 98.4 7E-06 1.5E-10 77.1 15.3 163 91-298 73-245 (260)
108 PRK00208 thiG thiazole synthas 98.4 9.5E-07 2.1E-11 81.1 9.0 75 218-297 132-208 (250)
109 PRK02083 imidazole glycerol ph 98.4 1.7E-06 3.7E-11 80.8 10.8 79 217-298 153-232 (253)
110 PF00724 Oxidored_FMN: NADH:fl 98.4 6.9E-06 1.5E-10 80.1 15.2 74 223-298 242-326 (341)
111 TIGR03572 WbuZ glycosyl amidat 98.4 1.5E-06 3.2E-11 80.1 9.6 78 217-297 153-231 (232)
112 PRK00748 1-(5-phosphoribosyl)- 98.4 1.4E-06 3E-11 80.1 9.3 78 219-299 148-226 (233)
113 TIGR00007 phosphoribosylformim 98.4 2.2E-06 4.9E-11 78.7 10.0 78 219-299 147-224 (230)
114 KOG2334 tRNA-dihydrouridine sy 98.4 4.4E-06 9.5E-11 81.3 12.2 202 69-298 8-247 (477)
115 PRK13585 1-(5-phosphoribosyl)- 98.4 2.5E-06 5.4E-11 78.9 10.3 80 216-298 148-227 (241)
116 TIGR00735 hisF imidazoleglycer 98.4 2.6E-06 5.7E-11 79.7 10.2 79 217-298 155-234 (254)
117 cd00452 KDPG_aldolase KDPG and 98.3 2E-05 4.3E-10 70.5 15.1 159 127-297 7-175 (190)
118 KOG0399 Glutamate synthase [Am 98.3 1.6E-06 3.6E-11 92.6 9.2 112 225-336 1117-1268(2142)
119 TIGR00262 trpA tryptophan synt 98.3 7.4E-05 1.6E-09 70.0 19.4 82 218-301 151-235 (256)
120 PRK07695 transcriptional regul 98.3 5.2E-06 1.1E-10 74.8 11.1 96 216-320 101-198 (201)
121 PF05690 ThiG: Thiazole biosyn 98.2 8.1E-06 1.8E-10 74.2 9.2 196 64-297 1-208 (247)
122 PRK13111 trpA tryptophan synth 98.2 0.0002 4.2E-09 67.2 18.9 81 218-301 153-236 (258)
123 PRK02083 imidazole glycerol ph 98.2 1.1E-05 2.3E-10 75.5 10.0 78 218-298 31-108 (253)
124 cd04731 HisF The cyclase subun 98.2 1.7E-05 3.8E-10 73.5 11.4 78 218-298 28-105 (243)
125 PRK07114 keto-hydroxyglutarate 98.2 0.00013 2.8E-09 66.8 16.3 162 126-297 17-192 (222)
126 TIGR01182 eda Entner-Doudoroff 98.1 6.6E-05 1.4E-09 67.8 14.1 161 126-297 10-180 (204)
127 TIGR00735 hisF imidazoleglycer 98.1 1.7E-05 3.6E-10 74.3 10.0 77 219-298 32-108 (254)
128 PRK00043 thiE thiamine-phospha 98.1 2.9E-05 6.2E-10 70.1 11.1 95 217-319 111-208 (212)
129 CHL00200 trpA tryptophan synth 98.1 0.0005 1.1E-08 64.6 18.7 82 218-301 155-239 (263)
130 PRK07455 keto-hydroxyglutarate 98.1 0.00017 3.7E-09 64.4 14.8 75 215-297 110-184 (187)
131 TIGR03128 RuMP_HxlA 3-hexulose 98.0 0.0003 6.5E-09 63.4 15.9 76 219-297 115-190 (206)
132 PF00218 IGPS: Indole-3-glycer 98.0 6.4E-05 1.4E-09 70.2 11.7 150 139-298 71-243 (254)
133 PRK13957 indole-3-glycerol-pho 98.0 0.00035 7.6E-09 64.9 16.4 166 91-299 64-236 (247)
134 COG0106 HisA Phosphoribosylfor 98.0 0.00046 9.9E-09 63.5 16.7 81 213-298 140-226 (241)
135 CHL00162 thiG thiamin biosynth 98.0 2.8E-05 6.1E-10 71.5 8.3 77 218-298 146-223 (267)
136 COG0107 HisF Imidazoleglycerol 98.0 0.00017 3.6E-09 65.5 12.8 164 92-299 65-235 (256)
137 COG0134 TrpC Indole-3-glycerol 98.0 0.00027 5.8E-09 65.6 14.4 80 216-298 162-241 (254)
138 cd04732 HisA HisA. Phosphorib 97.9 6.3E-05 1.4E-09 69.1 10.0 77 218-297 30-106 (234)
139 PLN02591 tryptophan synthase 97.9 0.0013 2.9E-08 61.3 18.6 81 218-300 142-225 (250)
140 cd04726 KGPDC_HPS 3-Keto-L-gul 97.9 0.00057 1.2E-08 61.2 15.7 78 216-297 112-190 (202)
141 TIGR01304 IMP_DH_rel_2 IMP deh 97.9 4.2E-05 9.1E-10 75.1 8.9 74 218-294 143-217 (369)
142 cd04724 Tryptophan_synthase_al 97.9 0.0011 2.4E-08 61.6 17.7 81 218-301 140-223 (242)
143 cd00958 DhnA Class I fructose- 97.9 0.00022 4.9E-09 65.7 13.0 65 223-298 149-219 (235)
144 PRK07028 bifunctional hexulose 97.9 0.0006 1.3E-08 68.6 17.0 74 220-297 121-194 (430)
145 cd00564 TMP_TenI Thiamine mono 97.9 0.00011 2.4E-09 65.0 10.2 78 217-297 102-182 (196)
146 PRK06015 keto-hydroxyglutarate 97.9 0.0012 2.7E-08 59.5 16.9 159 126-296 6-175 (201)
147 PRK06806 fructose-bisphosphate 97.8 0.0042 9.2E-08 59.0 21.0 109 217-329 152-278 (281)
148 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00021 4.5E-09 65.7 11.9 78 218-298 31-108 (233)
149 PLN02334 ribulose-phosphate 3- 97.8 0.0015 3.4E-08 60.0 17.3 96 220-323 128-226 (229)
150 PRK08649 inosine 5-monophospha 97.8 8.5E-05 1.8E-09 73.1 8.7 72 218-294 142-216 (368)
151 PRK07226 fructose-bisphosphate 97.8 0.00055 1.2E-08 64.5 13.5 65 223-298 166-236 (267)
152 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00014 3E-09 66.8 8.9 71 222-298 146-218 (221)
153 cd00959 DeoC 2-deoxyribose-5-p 97.7 0.00036 7.8E-09 63.1 11.4 65 223-291 137-201 (203)
154 PRK13802 bifunctional indole-3 97.7 0.00066 1.4E-08 71.8 14.8 80 216-298 166-245 (695)
155 PRK06801 hypothetical protein; 97.7 0.0095 2.1E-07 56.7 21.0 109 218-329 156-283 (286)
156 PRK13587 1-(5-phosphoribosyl)- 97.7 0.00027 5.9E-09 65.3 10.2 78 216-298 147-226 (234)
157 TIGR00693 thiE thiamine-phosph 97.7 0.00034 7.3E-09 62.5 10.3 80 216-297 102-184 (196)
158 PRK00507 deoxyribose-phosphate 97.7 0.00022 4.7E-09 65.4 9.0 69 223-295 142-210 (221)
159 PRK13307 bifunctional formalde 97.7 0.003 6.5E-08 62.6 17.3 144 114-297 217-362 (391)
160 COG2022 ThiG Uncharacterized e 97.6 0.00022 4.7E-09 64.7 8.2 77 218-298 139-216 (262)
161 PRK14024 phosphoribosyl isomer 97.6 0.00053 1.1E-08 63.7 11.1 77 218-298 33-109 (241)
162 PRK09427 bifunctional indole-3 97.6 0.001 2.3E-08 67.1 13.9 107 216-335 165-271 (454)
163 PRK07315 fructose-bisphosphate 97.6 0.019 4.1E-07 54.9 21.7 79 218-298 154-237 (293)
164 TIGR01163 rpe ribulose-phospha 97.6 0.0033 7.1E-08 56.5 15.8 78 219-297 115-197 (210)
165 PF00977 His_biosynth: Histidi 97.6 0.00033 7.1E-09 64.6 9.3 80 216-298 146-225 (229)
166 TIGR00126 deoC deoxyribose-pho 97.6 0.00066 1.4E-08 61.8 11.1 68 223-294 138-205 (211)
167 cd00956 Transaldolase_FSA Tran 97.6 0.0074 1.6E-07 55.0 17.6 147 116-302 45-194 (211)
168 TIGR01859 fruc_bis_ald_ fructo 97.6 0.015 3.2E-07 55.3 20.4 109 217-329 152-279 (282)
169 PRK02615 thiamine-phosphate py 97.6 0.00068 1.5E-08 66.1 11.5 80 216-298 246-327 (347)
170 COG0800 Eda 2-keto-3-deoxy-6-p 97.6 0.0027 5.7E-08 57.4 14.2 154 132-297 21-185 (211)
171 PRK11840 bifunctional sulfur c 97.6 0.0003 6.5E-09 67.4 8.6 76 218-297 206-282 (326)
172 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00041 8.9E-09 64.4 9.2 78 216-298 143-228 (241)
173 PF01791 DeoC: DeoC/LacD famil 97.5 0.00028 6.1E-09 65.2 8.0 71 223-297 152-234 (236)
174 PLN02460 indole-3-glycerol-pho 97.5 0.0022 4.7E-08 62.1 14.2 80 216-298 236-322 (338)
175 COG0269 SgbH 3-hexulose-6-phos 97.5 0.0019 4.1E-08 58.4 12.8 96 216-320 115-213 (217)
176 PF01081 Aldolase: KDPG and KH 97.5 0.0023 4.9E-08 57.6 13.3 118 127-293 11-128 (196)
177 PRK05848 nicotinate-nucleotide 97.5 0.00046 1E-08 65.2 9.3 71 216-297 188-261 (273)
178 PRK13585 1-(5-phosphoribosyl)- 97.5 0.00059 1.3E-08 63.1 9.7 77 218-297 33-109 (241)
179 TIGR03572 WbuZ glycosyl amidat 97.5 0.00072 1.6E-08 62.2 10.2 77 218-297 31-107 (232)
180 TIGR01919 hisA-trpF 1-(5-phosp 97.5 0.00062 1.3E-08 63.3 9.5 78 216-298 148-230 (243)
181 TIGR00875 fsa_talC_mipB fructo 97.5 0.021 4.5E-07 52.1 19.1 172 90-301 9-193 (213)
182 cd04723 HisA_HisF Phosphoribos 97.5 0.00066 1.4E-08 62.7 9.2 76 219-298 148-223 (233)
183 PRK07998 gatY putative fructos 97.4 0.027 5.8E-07 53.5 20.0 107 218-329 153-278 (283)
184 PRK06512 thiamine-phosphate py 97.4 0.0012 2.5E-08 60.6 10.3 78 218-298 119-197 (221)
185 cd00947 TBP_aldolase_IIB Tagat 97.4 0.046 1E-06 51.8 20.9 204 91-328 27-274 (276)
186 cd00945 Aldolase_Class_I Class 97.4 0.012 2.6E-07 51.9 16.3 171 90-293 15-201 (201)
187 PRK08185 hypothetical protein; 97.4 0.049 1.1E-06 51.8 21.1 110 217-329 148-277 (283)
188 TIGR00007 phosphoribosylformim 97.4 0.0012 2.7E-08 60.5 10.1 77 218-297 29-105 (230)
189 PRK07709 fructose-bisphosphate 97.4 0.045 9.7E-07 52.1 20.7 108 217-329 155-282 (285)
190 PRK04128 1-(5-phosphoribosyl)- 97.4 0.00094 2E-08 61.5 9.1 75 219-297 32-106 (228)
191 PRK05742 nicotinate-nucleotide 97.4 0.001 2.2E-08 63.0 9.5 70 217-297 196-265 (277)
192 TIGR00259 thylakoid_BtpA membr 97.4 0.0072 1.6E-07 56.5 14.9 71 219-296 159-230 (257)
193 PRK05718 keto-hydroxyglutarate 97.3 0.0045 9.7E-08 56.4 12.9 118 126-292 17-134 (212)
194 PRK07428 nicotinate-nucleotide 97.3 0.0012 2.7E-08 62.7 9.5 70 217-297 203-275 (288)
195 cd00429 RPE Ribulose-5-phospha 97.3 0.0094 2E-07 53.5 14.9 76 220-297 118-198 (211)
196 PRK12737 gatY tagatose-bisphos 97.3 0.058 1.3E-06 51.3 20.5 107 218-329 155-281 (284)
197 TIGR00167 cbbA ketose-bisphosp 97.3 0.053 1.1E-06 51.7 20.2 109 217-329 157-285 (288)
198 PRK13587 1-(5-phosphoribosyl)- 97.3 0.0016 3.5E-08 60.2 9.7 75 220-297 34-109 (234)
199 PRK05835 fructose-bisphosphate 97.3 0.068 1.5E-06 51.3 20.9 109 218-329 155-304 (307)
200 PLN02411 12-oxophytodienoate r 97.3 0.0044 9.6E-08 61.6 13.3 66 230-298 273-347 (391)
201 TIGR01858 tag_bisphos_ald clas 97.3 0.066 1.4E-06 50.9 20.3 108 217-329 152-279 (282)
202 PF02581 TMP-TENI: Thiamine mo 97.3 0.0019 4.2E-08 57.1 9.4 76 217-295 102-179 (180)
203 PRK04169 geranylgeranylglycery 97.3 0.0027 5.8E-08 58.6 10.5 67 227-298 151-218 (232)
204 TIGR02129 hisA_euk phosphoribo 97.2 0.0012 2.6E-08 61.5 8.3 68 220-297 41-108 (253)
205 PRK01362 putative translaldola 97.2 0.049 1.1E-06 49.7 18.5 146 116-301 45-193 (214)
206 PF01081 Aldolase: KDPG and KH 97.2 0.0032 6.8E-08 56.6 10.4 155 90-297 22-180 (196)
207 cd00405 PRAI Phosphoribosylant 97.2 0.017 3.8E-07 51.9 15.5 68 225-297 115-185 (203)
208 COG0159 TrpA Tryptophan syntha 97.2 0.07 1.5E-06 50.0 19.6 151 115-302 86-242 (265)
209 PRK12738 kbaY tagatose-bisphos 97.2 0.091 2E-06 50.0 20.7 109 218-329 155-281 (286)
210 PRK04302 triosephosphate isome 97.2 0.0026 5.5E-08 58.4 9.9 81 218-298 122-207 (223)
211 PF00290 Trp_syntA: Tryptophan 97.2 0.035 7.6E-07 52.1 17.6 163 115-316 79-248 (259)
212 PRK09195 gatY tagatose-bisphos 97.2 0.079 1.7E-06 50.4 20.2 110 217-329 154-281 (284)
213 PRK01033 imidazole glycerol ph 97.2 0.0026 5.6E-08 59.7 10.1 77 218-297 31-107 (258)
214 cd01572 QPRTase Quinolinate ph 97.2 0.0015 3.2E-08 61.7 8.4 70 217-297 189-258 (268)
215 cd04723 HisA_HisF Phosphoribos 97.2 0.0021 4.6E-08 59.3 9.2 76 218-297 36-111 (233)
216 TIGR00078 nadC nicotinate-nucl 97.2 0.0025 5.4E-08 60.1 9.6 69 217-296 185-253 (265)
217 PRK05718 keto-hydroxyglutarate 97.2 0.025 5.5E-07 51.5 15.8 153 90-298 29-187 (212)
218 PRK08385 nicotinate-nucleotide 97.2 0.013 2.9E-07 55.5 14.5 71 216-297 188-263 (278)
219 PRK08610 fructose-bisphosphate 97.2 0.098 2.1E-06 49.8 20.4 107 218-329 156-282 (286)
220 COG0214 SNZ1 Pyridoxine biosyn 97.1 0.0044 9.6E-08 56.4 10.5 45 251-297 195-241 (296)
221 PRK08072 nicotinate-nucleotide 97.1 0.0025 5.4E-08 60.4 9.4 70 217-297 195-264 (277)
222 PRK13586 1-(5-phosphoribosyl)- 97.1 0.0028 6E-08 58.6 9.3 76 216-297 145-222 (232)
223 KOG1606 Stationary phase-induc 97.1 0.015 3.3E-07 52.2 13.4 114 216-333 131-288 (296)
224 cd02812 PcrB_like PcrB_like pr 97.1 0.0024 5.3E-08 58.3 8.7 70 222-298 140-209 (219)
225 COG0352 ThiE Thiamine monophos 97.1 0.0061 1.3E-07 55.4 11.3 79 217-298 111-191 (211)
226 PF01116 F_bP_aldolase: Fructo 97.1 0.056 1.2E-06 51.5 18.0 205 91-329 31-284 (287)
227 PRK12857 fructose-1,6-bisphosp 97.1 0.15 3.2E-06 48.6 20.5 107 218-329 155-281 (284)
228 PRK12656 fructose-6-phosphate 97.1 0.087 1.9E-06 48.3 18.2 86 213-301 109-197 (222)
229 PRK12653 fructose-6-phosphate 97.0 0.11 2.4E-06 47.6 18.6 173 90-302 9-196 (220)
230 TIGR01769 GGGP geranylgeranylg 97.0 0.0049 1.1E-07 55.8 9.6 67 222-293 139-205 (205)
231 COG0107 HisF Imidazoleglycerol 97.0 0.004 8.8E-08 56.7 8.9 78 218-298 31-108 (256)
232 PRK05581 ribulose-phosphate 3- 97.0 0.018 3.8E-07 52.2 13.4 76 221-297 122-202 (220)
233 PRK12655 fructose-6-phosphate 97.0 0.15 3.2E-06 46.8 18.9 98 215-315 109-211 (220)
234 PRK08883 ribulose-phosphate 3- 97.0 0.062 1.3E-06 49.2 16.4 93 219-319 118-215 (220)
235 TIGR01949 AroFGH_arch predicte 96.9 0.0051 1.1E-07 57.7 9.5 65 223-298 162-232 (258)
236 PRK13586 1-(5-phosphoribosyl)- 96.9 0.0099 2.1E-07 54.9 11.2 76 218-297 31-106 (232)
237 PF00977 His_biosynth: Histidi 96.9 0.0022 4.7E-08 59.1 6.8 77 219-298 31-107 (229)
238 PRK11750 gltB glutamate syntha 96.9 0.0084 1.8E-07 67.5 12.4 120 221-340 601-734 (1485)
239 PRK04128 1-(5-phosphoribosyl)- 96.9 0.003 6.6E-08 58.2 7.3 68 221-298 147-216 (228)
240 cd01573 modD_like ModD; Quinol 96.9 0.0049 1.1E-07 58.3 8.6 69 217-296 190-261 (272)
241 cd01568 QPRTase_NadC Quinolina 96.8 0.0071 1.5E-07 57.1 9.5 70 216-296 187-258 (269)
242 PLN02446 (5-phosphoribosyl)-5- 96.8 0.0063 1.4E-07 57.0 8.9 77 218-297 163-242 (262)
243 PRK14114 1-(5-phosphoribosyl)- 96.8 0.0076 1.7E-07 56.0 9.4 74 219-296 32-105 (241)
244 TIGR01768 GGGP-family geranylg 96.8 0.0093 2E-07 54.6 9.5 66 229-298 148-213 (223)
245 PRK12376 putative translaldola 96.8 0.19 4.2E-06 46.5 18.2 176 90-301 14-207 (236)
246 PLN02617 imidazole glycerol ph 96.8 0.0057 1.2E-07 63.2 8.9 78 216-298 437-517 (538)
247 PRK08227 autoinducer 2 aldolas 96.8 0.018 3.9E-07 54.1 11.4 181 68-295 27-228 (264)
248 TIGR01919 hisA-trpF 1-(5-phosp 96.7 0.012 2.6E-07 54.7 9.6 73 221-297 35-107 (243)
249 PTZ00170 D-ribulose-5-phosphat 96.6 0.067 1.4E-06 49.3 14.2 96 218-321 125-223 (228)
250 PF03437 BtpA: BtpA family; I 96.6 0.053 1.1E-06 50.7 13.5 69 221-297 162-231 (254)
251 PRK03512 thiamine-phosphate py 96.6 0.024 5.2E-07 51.6 11.0 79 217-297 109-190 (211)
252 PF04898 Glu_syn_central: Glut 96.6 0.027 5.9E-07 53.4 11.5 117 221-340 146-280 (287)
253 PLN02446 (5-phosphoribosyl)-5- 96.6 0.012 2.7E-07 55.1 8.9 73 218-298 44-116 (262)
254 PRK09196 fructose-1,6-bisphosp 96.5 0.43 9.3E-06 46.6 19.6 113 217-330 172-327 (347)
255 TIGR01521 FruBisAldo_II_B fruc 96.5 0.46 1E-05 46.4 19.8 113 217-330 170-325 (347)
256 PF01884 PcrB: PcrB family; I 96.5 0.016 3.4E-07 53.3 9.2 66 227-298 150-216 (230)
257 PF04481 DUF561: Protein of un 96.5 0.023 4.9E-07 51.4 9.5 72 220-296 135-217 (242)
258 PLN02898 HMP-P kinase/thiamin- 96.5 0.025 5.4E-07 58.1 11.3 96 217-321 397-497 (502)
259 PRK12290 thiE thiamine-phospha 96.5 0.028 6E-07 56.3 11.0 80 218-298 308-397 (437)
260 COG0274 DeoC Deoxyribose-phosp 96.4 0.0092 2E-07 54.3 7.0 75 216-294 135-213 (228)
261 PF01729 QRPTase_C: Quinolinat 96.4 0.016 3.5E-07 50.9 8.4 70 217-297 87-159 (169)
262 PRK08999 hypothetical protein; 96.4 0.015 3.2E-07 55.9 8.8 76 217-295 233-310 (312)
263 PRK07084 fructose-bisphosphate 96.4 0.76 1.6E-05 44.4 19.9 82 217-299 163-274 (321)
264 PRK13399 fructose-1,6-bisphosp 96.4 0.73 1.6E-05 45.0 20.0 113 217-330 172-327 (347)
265 KOG4201 Anthranilate synthase 96.3 0.02 4.3E-07 51.7 8.3 80 216-298 192-271 (289)
266 PRK13397 3-deoxy-7-phosphohept 96.3 0.3 6.5E-06 45.6 16.5 204 60-296 3-222 (250)
267 cd00381 IMPDH IMPDH: The catal 96.3 0.021 4.5E-07 55.4 9.0 69 219-293 95-163 (325)
268 PLN02417 dihydrodipicolinate s 96.3 0.024 5.2E-07 53.8 9.2 99 212-317 19-124 (280)
269 PRK13306 ulaD 3-keto-L-gulonat 96.3 0.087 1.9E-06 48.1 12.5 95 218-321 117-213 (216)
270 PF04131 NanE: Putative N-acet 96.3 0.092 2E-06 46.7 12.0 67 218-292 52-118 (192)
271 PRK09250 fructose-bisphosphate 96.3 0.031 6.7E-07 54.3 9.9 178 92-297 95-322 (348)
272 PTZ00314 inosine-5'-monophosph 96.3 0.017 3.6E-07 59.3 8.6 231 41-293 18-310 (495)
273 TIGR01182 eda Entner-Doudoroff 96.2 0.026 5.6E-07 51.1 8.7 62 216-292 66-127 (204)
274 TIGR02134 transald_staph trans 96.2 0.77 1.7E-05 42.5 18.3 175 90-301 14-207 (236)
275 PRK06559 nicotinate-nucleotide 96.2 0.026 5.7E-07 53.7 8.9 71 216-297 203-273 (290)
276 PRK09722 allulose-6-phosphate 96.2 0.39 8.5E-06 44.3 16.3 163 115-320 52-220 (229)
277 TIGR02313 HpaI-NOT-DapA 2,4-di 96.1 0.03 6.5E-07 53.5 9.1 94 220-318 24-124 (294)
278 PRK06106 nicotinate-nucleotide 96.1 0.034 7.4E-07 52.7 9.3 70 217-297 201-270 (281)
279 PLN02617 imidazole glycerol ph 96.1 0.03 6.5E-07 57.9 9.6 79 218-298 268-359 (538)
280 TIGR02129 hisA_euk phosphoribo 96.1 0.04 8.8E-07 51.4 9.4 78 216-297 156-236 (253)
281 PRK06843 inosine 5-monophospha 96.0 0.026 5.6E-07 56.2 8.3 68 220-293 155-222 (404)
282 TIGR01302 IMP_dehydrog inosine 96.0 0.027 5.8E-07 57.1 8.5 238 42-293 3-293 (450)
283 cd04735 OYE_like_4_FMN Old yel 96.0 0.67 1.4E-05 45.5 18.0 209 63-294 5-256 (353)
284 PRK06852 aldolase; Validated 96.0 0.091 2E-06 50.4 11.4 68 223-295 194-267 (304)
285 PRK06978 nicotinate-nucleotide 95.9 0.039 8.4E-07 52.6 8.8 71 216-297 211-281 (294)
286 cd00408 DHDPS-like Dihydrodipi 95.9 0.052 1.1E-06 51.2 9.6 102 211-317 14-120 (281)
287 PLN02716 nicotinate-nucleotide 95.9 0.044 9.6E-07 52.5 9.0 78 216-297 209-294 (308)
288 cd00952 CHBPH_aldolase Trans-o 95.9 0.039 8.4E-07 53.2 8.7 94 220-318 32-132 (309)
289 PRK06543 nicotinate-nucleotide 95.9 0.043 9.3E-07 52.1 8.8 71 216-297 199-269 (281)
290 PRK03620 5-dehydro-4-deoxygluc 95.9 0.047 1E-06 52.4 9.2 93 220-318 31-130 (303)
291 COG4981 Enoyl reductase domain 95.9 1.1 2.4E-05 45.9 18.8 205 49-299 11-259 (717)
292 PRK08745 ribulose-phosphate 3- 95.9 0.74 1.6E-05 42.3 16.6 94 218-319 121-219 (223)
293 cd00951 KDGDH 5-dehydro-4-deox 95.9 0.047 1E-06 52.0 9.2 95 220-318 24-123 (289)
294 PRK07896 nicotinate-nucleotide 95.9 0.039 8.4E-07 52.6 8.4 71 216-297 205-278 (289)
295 PRK09016 quinolinate phosphori 95.8 0.042 9E-07 52.5 8.5 71 216-297 214-284 (296)
296 COG0329 DapA Dihydrodipicolina 95.8 0.048 1E-06 52.3 9.0 96 219-319 27-129 (299)
297 PRK12595 bifunctional 3-deoxy- 95.8 1.1 2.3E-05 44.2 18.6 210 54-296 98-325 (360)
298 PF05690 ThiG: Thiazole biosyn 95.6 0.25 5.5E-06 45.4 12.0 38 199-236 166-203 (247)
299 PRK00278 trpC indole-3-glycero 95.5 0.29 6.3E-06 46.0 13.0 117 138-294 72-188 (260)
300 cd00331 IGPS Indole-3-glycerol 95.5 0.06 1.3E-06 48.9 8.1 73 218-296 32-104 (217)
301 TIGR00734 hisAF_rel hisA/hisF 95.5 0.076 1.7E-06 48.7 8.7 73 219-297 38-112 (221)
302 PLN02858 fructose-bisphosphate 95.5 1.8 4E-05 49.9 21.4 113 217-329 1249-1375(1378)
303 TIGR01305 GMP_reduct_1 guanosi 95.5 0.31 6.7E-06 47.3 13.0 69 219-293 108-178 (343)
304 TIGR03249 KdgD 5-dehydro-4-deo 95.5 0.08 1.7E-06 50.6 9.1 96 219-318 28-128 (296)
305 PRK09427 bifunctional indole-3 95.5 0.13 2.8E-06 52.1 11.0 68 215-293 217-284 (454)
306 cd04733 OYE_like_2_FMN Old yel 95.5 0.72 1.6E-05 44.9 15.9 74 219-293 151-256 (338)
307 cd04728 ThiG Thiazole synthase 95.4 0.11 2.4E-06 48.1 9.4 89 139-236 110-203 (248)
308 PRK13957 indole-3-glycerol-pho 95.4 0.1 2.2E-06 48.7 9.2 72 219-296 63-134 (247)
309 PRK08091 ribulose-phosphate 3- 95.4 0.54 1.2E-05 43.3 13.9 78 218-298 129-211 (228)
310 cd00954 NAL N-Acetylneuraminic 95.4 0.08 1.7E-06 50.4 8.7 95 219-318 23-125 (288)
311 TIGR00683 nanA N-acetylneurami 95.4 0.11 2.3E-06 49.7 9.5 93 220-317 24-124 (290)
312 PLN02274 inosine-5'-monophosph 95.4 0.064 1.4E-06 55.2 8.5 236 41-293 22-317 (505)
313 TIGR00674 dapA dihydrodipicoli 95.3 0.11 2.4E-06 49.3 9.6 93 220-317 22-121 (285)
314 PRK09517 multifunctional thiam 95.3 0.18 3.8E-06 54.6 12.0 97 217-320 108-215 (755)
315 TIGR01303 IMP_DH_rel_1 IMP deh 95.3 0.078 1.7E-06 54.1 8.7 234 41-293 12-294 (475)
316 PRK13813 orotidine 5'-phosphat 95.3 0.057 1.2E-06 48.9 7.0 81 223-320 132-213 (215)
317 TIGR01334 modD putative molybd 95.3 0.091 2E-06 49.8 8.5 70 216-296 194-266 (277)
318 PRK04147 N-acetylneuraminate l 95.3 0.11 2.4E-06 49.5 9.3 94 219-317 26-127 (293)
319 cd00950 DHDPS Dihydrodipicolin 95.2 0.13 2.9E-06 48.6 9.7 99 212-317 18-123 (284)
320 PRK00208 thiG thiazole synthas 95.2 0.14 3.1E-06 47.4 9.3 105 123-236 90-203 (250)
321 PRK06096 molybdenum transport 95.2 0.11 2.3E-06 49.5 8.7 69 216-295 195-266 (284)
322 TIGR02319 CPEP_Pphonmut carbox 95.1 2.4 5.3E-05 40.6 17.8 70 220-300 168-240 (294)
323 COG0106 HisA Phosphoribosylfor 95.0 0.17 3.6E-06 46.8 9.2 74 218-295 32-106 (241)
324 cd00452 KDPG_aldolase KDPG and 95.0 0.15 3.2E-06 45.5 8.7 63 216-293 62-124 (190)
325 PRK07107 inosine 5-monophospha 95.0 0.1 2.2E-06 53.7 8.6 235 41-293 10-312 (502)
326 PRK05283 deoxyribose-phosphate 95.0 0.06 1.3E-06 50.3 6.3 68 224-297 154-226 (257)
327 PRK06015 keto-hydroxyglutarate 94.9 0.17 3.6E-06 45.8 8.9 62 216-292 62-123 (201)
328 PRK14057 epimerase; Provisiona 94.9 1.2 2.5E-05 41.7 14.7 91 218-316 143-238 (254)
329 PF00701 DHDPS: Dihydrodipicol 94.9 0.088 1.9E-06 50.0 7.3 93 219-316 24-123 (289)
330 PRK06552 keto-hydroxyglutarate 94.9 0.12 2.5E-06 47.2 7.8 78 200-292 55-135 (213)
331 PRK05567 inosine 5'-monophosph 94.7 0.14 3.1E-06 52.4 8.9 238 41-293 9-297 (486)
332 cd00945 Aldolase_Class_I Class 94.6 0.46 1E-05 41.6 11.0 84 220-317 16-108 (201)
333 PF00478 IMPDH: IMP dehydrogen 94.6 0.12 2.5E-06 50.7 7.6 69 219-293 109-177 (352)
334 PRK03170 dihydrodipicolinate s 94.6 0.21 4.6E-06 47.5 9.3 100 212-318 19-125 (292)
335 TIGR02320 PEP_mutase phosphoen 94.5 4.5 9.8E-05 38.6 18.8 73 219-299 171-246 (285)
336 PRK00230 orotidine 5'-phosphat 94.4 0.078 1.7E-06 48.9 5.6 80 220-320 138-228 (230)
337 CHL00162 thiG thiamin biosynth 94.4 0.12 2.6E-06 48.0 6.5 38 199-236 180-217 (267)
338 COG1830 FbaB DhnA-type fructos 94.3 0.56 1.2E-05 43.9 11.0 65 222-297 171-241 (265)
339 COG0036 Rpe Pentose-5-phosphat 94.3 2.5 5.3E-05 38.7 14.8 94 219-319 120-217 (220)
340 PF04309 G3P_antiterm: Glycero 94.2 0.024 5.2E-07 50.0 1.7 64 224-298 111-174 (175)
341 TIGR01306 GMP_reduct_2 guanosi 94.2 0.22 4.7E-06 48.2 8.3 67 221-293 97-165 (321)
342 CHL00200 trpA tryptophan synth 94.0 0.71 1.5E-05 43.5 11.2 30 208-237 201-231 (263)
343 PRK07114 keto-hydroxyglutarate 93.9 0.24 5.2E-06 45.4 7.7 62 216-292 77-138 (222)
344 PRK08673 3-deoxy-7-phosphohept 93.9 2.1 4.5E-05 41.8 14.5 124 202-327 194-333 (335)
345 PF09370 TIM-br_sig_trns: TIM- 93.9 2 4.3E-05 40.4 13.6 196 72-295 15-248 (268)
346 COG2022 ThiG Uncharacterized e 93.8 0.43 9.4E-06 43.7 8.9 95 135-236 116-210 (262)
347 TIGR01163 rpe ribulose-phospha 93.8 1.9 4.1E-05 38.5 13.3 124 133-294 8-134 (210)
348 PRK07807 inosine 5-monophospha 93.8 0.28 6E-06 50.2 8.6 234 41-293 13-296 (479)
349 PRK09140 2-dehydro-3-deoxy-6-p 93.7 0.3 6.5E-06 44.3 7.9 78 200-292 52-130 (206)
350 PRK05458 guanosine 5'-monophos 93.6 0.28 6E-06 47.6 7.9 68 220-293 99-168 (326)
351 TIGR02317 prpB methylisocitrat 93.6 6.9 0.00015 37.3 17.9 188 74-299 14-235 (285)
352 PRK08005 epimerase; Validated 93.6 4.4 9.5E-05 36.9 15.2 77 218-298 117-195 (210)
353 COG0157 NadC Nicotinate-nucleo 93.5 0.39 8.6E-06 45.2 8.4 70 216-296 194-265 (280)
354 PRK13398 3-deoxy-7-phosphohept 93.5 3.7 7.9E-05 38.8 15.1 90 204-296 130-234 (266)
355 PLN02591 tryptophan synthase 93.3 0.63 1.4E-05 43.5 9.5 134 70-237 77-218 (250)
356 PRK13396 3-deoxy-7-phosphohept 93.0 2.3 5E-05 41.7 13.2 125 202-328 202-343 (352)
357 PRK11840 bifunctional sulfur c 93.0 0.69 1.5E-05 44.6 9.4 160 62-236 74-277 (326)
358 TIGR01361 DAHP_synth_Bsub phos 92.9 5.1 0.00011 37.6 15.0 92 203-296 127-232 (260)
359 COG1646 Predicted phosphate-bi 92.8 0.56 1.2E-05 43.0 8.0 62 228-296 162-223 (240)
360 cd04729 NanE N-acetylmannosami 92.7 3.6 7.8E-05 37.3 13.5 70 219-293 81-150 (219)
361 cd03319 L-Ala-DL-Glu_epimerase 92.6 4.4 9.5E-05 38.9 14.7 128 125-295 126-260 (316)
362 COG2876 AroA 3-deoxy-D-arabino 92.5 8.2 0.00018 36.3 15.3 186 74-294 48-250 (286)
363 cd02922 FCB2_FMN Flavocytochro 92.4 0.68 1.5E-05 45.4 8.7 73 219-294 133-242 (344)
364 PRK11320 prpB 2-methylisocitra 92.4 5.8 0.00013 37.9 14.8 180 90-299 26-240 (292)
365 PF00834 Ribul_P_3_epim: Ribul 92.4 0.83 1.8E-05 41.3 8.7 166 92-296 16-197 (201)
366 PF03932 CutC: CutC family; I 92.3 3.1 6.8E-05 37.5 12.3 125 130-290 66-196 (201)
367 PRK12858 tagatose 1,6-diphosph 92.3 0.34 7.4E-06 47.3 6.5 75 221-298 188-281 (340)
368 cd02809 alpha_hydroxyacid_oxid 92.3 0.86 1.9E-05 43.6 9.2 69 220-293 132-200 (299)
369 cd02810 DHOD_DHPD_FMN Dihydroo 92.3 2.8 6E-05 39.6 12.6 155 71-236 98-271 (289)
370 cd00377 ICL_PEPM Members of th 92.2 0.38 8.3E-06 44.7 6.5 76 220-295 87-182 (243)
371 cd00408 DHDPS-like Dihydrodipi 92.1 11 0.00023 35.5 20.3 181 73-296 3-204 (281)
372 PRK05096 guanosine 5'-monophos 92.1 2.9 6.4E-05 40.6 12.4 67 221-293 111-179 (346)
373 TIGR00736 nifR3_rel_arch TIM-b 92.0 1 2.2E-05 41.6 8.9 84 123-236 135-219 (231)
374 cd01571 NAPRTase_B Nicotinate 92.0 0.91 2E-05 43.6 8.9 73 220-297 198-277 (302)
375 PF03932 CutC: CutC family; I 91.9 0.81 1.8E-05 41.3 8.0 74 217-294 7-93 (201)
376 PRK01130 N-acetylmannosamine-6 91.8 6 0.00013 35.8 13.8 70 219-293 77-146 (221)
377 PRK11572 copper homeostasis pr 91.6 1.2 2.7E-05 41.4 9.0 74 217-294 8-94 (248)
378 PRK07455 keto-hydroxyglutarate 91.6 0.91 2E-05 40.4 7.9 116 126-292 14-131 (187)
379 cd00953 KDG_aldolase KDG (2-ke 91.5 0.59 1.3E-05 44.3 7.0 91 220-317 23-120 (279)
380 cd00950 DHDPS Dihydrodipicolin 91.4 13 0.00028 35.0 17.1 184 72-297 5-208 (284)
381 cd00439 Transaldolase Transald 91.3 11 0.00024 35.2 15.3 80 216-300 146-241 (252)
382 COG0434 SgcQ Predicted TIM-bar 91.1 0.99 2.1E-05 41.6 7.6 63 226-296 173-235 (263)
383 cd06556 ICL_KPHMT Members of t 90.9 0.79 1.7E-05 42.6 7.1 83 211-293 13-109 (240)
384 cd00516 PRTase_typeII Phosphor 90.9 1.1 2.3E-05 42.4 8.2 75 218-297 192-271 (281)
385 TIGR00259 thylakoid_BtpA membr 90.9 0.71 1.5E-05 43.3 6.8 74 219-293 30-109 (257)
386 PF00218 IGPS: Indole-3-glycer 90.9 1.1 2.4E-05 41.9 8.1 73 218-296 69-141 (254)
387 COG3142 CutC Uncharacterized p 90.8 3.6 7.8E-05 37.8 10.8 125 130-289 67-196 (241)
388 COG0434 SgcQ Predicted TIM-bar 90.7 1 2.2E-05 41.6 7.3 73 219-292 36-114 (263)
389 TIGR02708 L_lactate_ox L-lacta 90.4 1.6 3.5E-05 43.1 9.0 43 249-294 215-257 (367)
390 TIGR00343 pyridoxal 5'-phospha 90.2 0.81 1.8E-05 43.3 6.5 104 217-335 17-128 (287)
391 cd04727 pdxS PdxS is a subunit 90.2 0.78 1.7E-05 43.4 6.3 104 217-335 15-126 (283)
392 KOG2335 tRNA-dihydrouridine sy 89.9 4.5 9.7E-05 39.5 11.3 90 122-236 141-232 (358)
393 COG1954 GlpP Glycerol-3-phosph 89.9 1.6 3.4E-05 38.3 7.4 64 224-298 115-178 (181)
394 TIGR00262 trpA tryptophan synt 89.8 6.3 0.00014 36.9 12.2 21 216-236 206-226 (256)
395 TIGR01362 KDO8P_synth 3-deoxy- 89.8 9.7 0.00021 35.6 13.1 68 223-294 136-222 (258)
396 PLN02411 12-oxophytodienoate r 89.8 23 0.0005 35.3 17.9 84 62-152 15-103 (391)
397 PRK11320 prpB 2-methylisocitra 89.6 1.1 2.4E-05 42.9 7.0 75 216-292 23-112 (292)
398 COG3010 NanE Putative N-acetyl 89.6 10 0.00022 34.4 12.5 67 218-291 86-152 (229)
399 COG0167 PyrD Dihydroorotate de 89.6 2.7 5.8E-05 40.5 9.7 139 123-280 162-304 (310)
400 TIGR02317 prpB methylisocitrat 89.5 1.2 2.5E-05 42.5 7.1 76 216-293 19-108 (285)
401 PRK11572 copper homeostasis pr 89.5 7 0.00015 36.5 12.0 127 130-293 67-198 (248)
402 PLN02493 probable peroxisomal 89.3 2.1 4.6E-05 42.2 8.9 43 249-294 211-253 (367)
403 PRK12457 2-dehydro-3-deoxyphos 89.2 12 0.00025 35.5 13.3 104 223-328 150-274 (281)
404 TIGR03569 NeuB_NnaB N-acetylne 89.0 7.2 0.00016 38.0 12.3 59 216-284 95-153 (329)
405 PRK09197 fructose-bisphosphate 89.0 9 0.00019 37.6 12.8 81 217-299 187-285 (350)
406 cd04741 DHOD_1A_like Dihydroor 89.0 3.1 6.7E-05 39.7 9.7 106 122-236 157-271 (294)
407 cd00377 ICL_PEPM Members of th 88.8 1.6 3.6E-05 40.5 7.5 75 216-292 15-103 (243)
408 PLN02535 glycolate oxidase 88.8 2.1 4.6E-05 42.2 8.5 43 248-293 209-251 (364)
409 cd04740 DHOD_1B_like Dihydroor 88.7 4.2 9E-05 38.6 10.4 152 71-236 89-259 (296)
410 COG0191 Fba Fructose/tagatose 88.6 23 0.00049 33.8 19.6 109 217-329 155-283 (286)
411 COG2513 PrpB PEP phosphonomuta 88.5 1.7 3.7E-05 41.2 7.3 78 215-294 23-114 (289)
412 PRK02227 hypothetical protein; 88.2 2.8 6E-05 38.8 8.3 76 217-294 7-88 (238)
413 TIGR02313 HpaI-NOT-DapA 2,4-di 88.1 25 0.00054 33.5 21.6 182 72-296 5-209 (294)
414 COG0135 TrpF Phosphoribosylant 88.0 17 0.00037 33.0 13.2 154 92-294 13-184 (208)
415 TIGR03249 KdgD 5-dehydro-4-deo 87.7 26 0.00056 33.3 21.7 183 72-296 10-212 (296)
416 COG2513 PrpB PEP phosphonomuta 87.7 26 0.00056 33.4 17.1 183 90-300 27-241 (289)
417 TIGR03128 RuMP_HxlA 3-hexulose 87.7 6.4 0.00014 35.1 10.4 63 222-293 68-133 (206)
418 cd02940 DHPD_FMN Dihydropyrimi 87.6 4.8 0.0001 38.4 10.1 109 123-236 169-280 (299)
419 PRK07565 dihydroorotate dehydr 87.4 3.1 6.6E-05 40.5 8.7 71 221-293 118-197 (334)
420 cd04739 DHOD_like Dihydroorota 87.4 5.2 0.00011 38.7 10.3 187 71-284 99-304 (325)
421 PRK07259 dihydroorotate dehydr 87.3 6.9 0.00015 37.3 10.9 153 70-236 90-262 (301)
422 TIGR03569 NeuB_NnaB N-acetylne 86.9 32 0.00069 33.5 15.7 230 73-329 1-261 (329)
423 TIGR01520 FruBisAldo_II_A fruc 86.9 10 0.00022 37.2 11.8 82 218-299 195-293 (357)
424 cd00946 FBP_aldolase_IIA Class 86.8 9.7 0.00021 37.3 11.6 80 218-299 183-281 (345)
425 TIGR01037 pyrD_sub1_fam dihydr 86.7 5.1 0.00011 38.1 9.7 105 123-236 158-262 (300)
426 PRK05198 2-dehydro-3-deoxyphos 86.7 18 0.00039 34.0 12.8 68 223-294 144-230 (264)
427 cd00405 PRAI Phosphoribosylant 86.6 1.7 3.7E-05 38.9 6.0 74 216-294 5-81 (203)
428 PF03437 BtpA: BtpA family; I 86.4 2.7 5.8E-05 39.4 7.3 74 219-293 31-110 (254)
429 COG0159 TrpA Tryptophan syntha 86.2 4.2 9E-05 38.3 8.4 20 216-236 213-232 (265)
430 cd03316 MR_like Mandelate race 86.2 16 0.00035 35.5 13.1 123 134-293 139-270 (357)
431 PRK13111 trpA tryptophan synth 86.1 13 0.00027 35.0 11.7 21 216-237 208-228 (258)
432 PF00290 Trp_syntA: Tryptophan 86.0 5.1 0.00011 37.7 9.0 29 208-237 197-226 (259)
433 COG2185 Sbm Methylmalonyl-CoA 86.0 12 0.00025 32.0 10.2 80 72-154 13-96 (143)
434 COG0176 MipB Transaldolase [Ca 85.9 11 0.00025 34.9 10.9 84 217-303 123-210 (239)
435 PF04476 DUF556: Protein of un 85.8 6.9 0.00015 36.1 9.4 76 217-294 7-88 (235)
436 cd04738 DHOD_2_like Dihydrooro 85.7 4.7 0.0001 39.1 9.0 104 123-236 203-308 (327)
437 COG2185 Sbm Methylmalonyl-CoA 85.7 4.2 9.2E-05 34.6 7.5 67 217-292 49-121 (143)
438 COG0329 DapA Dihydrodipicolina 85.5 35 0.00076 32.7 22.6 182 72-294 9-210 (299)
439 cd00453 FTBP_aldolase_II Fruct 85.5 27 0.00058 34.1 13.7 82 218-299 181-278 (340)
440 cd02932 OYE_YqiM_FMN Old yello 85.4 3.8 8.2E-05 39.8 8.1 74 219-293 156-261 (336)
441 PLN02495 oxidoreductase, actin 85.3 14 0.00031 36.7 12.2 192 71-280 113-333 (385)
442 TIGR03239 GarL 2-dehydro-3-deo 85.2 5.9 0.00013 37.0 9.0 73 213-293 16-91 (249)
443 PF01207 Dus: Dihydrouridine s 85.2 3.7 8.1E-05 39.5 8.0 90 120-236 120-212 (309)
444 TIGR02321 Pphn_pyruv_hyd phosp 85.1 13 0.00027 35.6 11.3 70 221-299 170-241 (290)
445 TIGR00640 acid_CoA_mut_C methy 85.1 5.1 0.00011 33.6 7.7 66 218-291 40-110 (132)
446 PRK12309 transaldolase/EF-hand 85.1 32 0.00069 34.4 14.5 80 216-300 161-256 (391)
447 PRK10558 alpha-dehydro-beta-de 85.0 4.4 9.6E-05 38.0 8.1 74 213-294 23-99 (256)
448 cd04726 KGPDC_HPS 3-Keto-L-gul 85.0 3.9 8.4E-05 36.3 7.5 64 221-293 68-133 (202)
449 PTZ00411 transaldolase-like pr 84.8 5.1 0.00011 39.1 8.6 82 216-301 167-263 (333)
450 cd04722 TIM_phosphate_binding 84.8 3.5 7.5E-05 35.5 7.0 75 219-295 14-93 (200)
451 PRK15063 isocitrate lyase; Pro 84.7 2.4 5.1E-05 42.6 6.4 79 216-294 69-182 (428)
452 PRK10550 tRNA-dihydrouridine s 84.7 10 0.00023 36.5 10.7 88 123-236 134-223 (312)
453 PLN02424 ketopantoate hydroxym 84.7 32 0.0007 33.5 13.9 41 219-271 184-224 (332)
454 PF00701 DHDPS: Dihydrodipicol 84.2 37 0.00081 32.0 20.9 182 73-296 7-208 (289)
455 PRK08318 dihydropyrimidine deh 84.1 5.2 0.00011 40.1 8.7 109 123-236 169-281 (420)
456 cd02931 ER_like_FMN Enoate red 84.0 3.3 7.1E-05 41.1 7.1 89 63-153 5-100 (382)
457 PRK03170 dihydrodipicolinate s 83.9 39 0.00085 31.9 21.4 184 72-297 6-209 (292)
458 cd04736 MDH_FMN Mandelate dehy 83.9 2.1 4.5E-05 42.2 5.6 43 249-294 223-265 (361)
459 PRK10128 2-keto-3-deoxy-L-rham 83.9 7.7 0.00017 36.6 9.2 74 213-294 22-98 (267)
460 PRK05286 dihydroorotate dehydr 83.8 5.1 0.00011 39.2 8.3 104 123-236 212-317 (344)
461 TIGR03586 PseI pseudaminic aci 83.8 21 0.00046 34.7 12.4 67 216-292 96-166 (327)
462 PRK13305 sgbH 3-keto-L-gulonat 83.7 0.37 8E-06 44.1 0.3 97 216-321 115-213 (218)
463 PLN02460 indole-3-glycerol-pho 83.4 3.5 7.5E-05 40.2 6.8 70 219-294 141-211 (338)
464 cd03332 LMO_FMN L-Lactate 2-mo 83.1 2.4 5.1E-05 42.2 5.6 43 249-294 240-282 (383)
465 cd06557 KPHMT-like Ketopantoat 83.0 4 8.7E-05 38.2 6.9 81 212-292 14-110 (254)
466 COG2089 SpsE Sialic acid synth 82.8 49 0.0011 32.2 15.5 248 62-329 1-273 (347)
467 TIGR03217 4OH_2_O_val_ald 4-hy 82.8 8.6 0.00019 37.5 9.4 74 220-294 27-108 (333)
468 TIGR02319 CPEP_Pphonmut carbox 82.5 2.5 5.4E-05 40.5 5.4 76 216-293 22-112 (294)
469 COG0800 Eda 2-keto-3-deoxy-6-p 82.4 8.3 0.00018 35.0 8.4 61 222-291 30-90 (211)
470 PF13714 PEP_mutase: Phosphoen 82.3 3.7 8.1E-05 38.0 6.3 76 216-293 15-105 (238)
471 PLN02826 dihydroorotate dehydr 82.2 9.1 0.0002 38.4 9.5 105 123-236 263-369 (409)
472 cd02911 arch_FMN Archeal FMN-b 81.8 11 0.00025 34.6 9.4 80 123-236 140-219 (233)
473 PLN02979 glycolate oxidase 81.8 3 6.5E-05 41.1 5.7 44 248-294 209-252 (366)
474 PF13714 PEP_mutase: Phosphoen 81.6 11 0.00024 34.9 9.2 183 73-299 9-225 (238)
475 TIGR03151 enACPred_II putative 81.5 26 0.00055 33.7 12.0 110 92-237 78-190 (307)
476 TIGR00674 dapA dihydrodipicoli 81.4 49 0.0011 31.2 22.4 184 72-297 3-206 (285)
477 cd00957 Transaldolase_TalAB Tr 81.3 5.8 0.00013 38.3 7.4 81 216-301 155-251 (313)
478 PRK11197 lldD L-lactate dehydr 81.3 2.9 6.3E-05 41.5 5.5 44 248-294 231-274 (381)
479 cd02803 OYE_like_FMN_family Ol 81.0 3.9 8.4E-05 39.3 6.2 210 63-295 4-250 (327)
480 COG0516 GuaB IMP dehydrogenase 80.8 0.82 1.8E-05 40.0 1.4 61 41-107 15-77 (170)
481 COG1411 Uncharacterized protei 80.8 3.4 7.3E-05 37.2 5.1 63 231-298 152-215 (229)
482 COG0042 tRNA-dihydrouridine sy 80.8 11 0.00023 36.7 9.1 87 123-236 137-227 (323)
483 TIGR02320 PEP_mutase phosphoen 80.6 7.1 0.00015 37.2 7.7 74 216-292 15-111 (285)
484 PRK10415 tRNA-dihydrouridine s 80.6 14 0.00029 35.8 9.8 73 137-236 150-223 (321)
485 TIGR02311 HpaI 2,4-dihydroxyhe 80.5 12 0.00025 34.9 9.1 75 213-294 16-92 (249)
486 cd03315 MLE_like Muconate lact 80.5 49 0.0011 30.7 15.6 119 133-293 84-210 (265)
487 TIGR02321 Pphn_pyruv_hyd phosp 80.5 7.5 0.00016 37.2 7.8 76 216-293 21-110 (290)
488 TIGR01232 lacD tagatose 1,6-di 80.3 6.9 0.00015 37.8 7.5 71 264-341 241-317 (325)
489 PRK04161 tagatose 1,6-diphosph 79.9 5.9 0.00013 38.3 6.9 75 264-345 242-322 (329)
490 TIGR00742 yjbN tRNA dihydrouri 79.9 21 0.00046 34.5 10.9 95 122-236 123-222 (318)
491 KOG0134 NADH:flavin oxidoreduc 79.9 4.9 0.00011 39.9 6.5 77 219-298 263-353 (400)
492 TIGR00737 nifR3_yhdG putative 79.8 16 0.00035 35.1 10.1 73 137-236 148-221 (319)
493 cd00429 RPE Ribulose-5-phospha 79.7 43 0.00092 29.5 13.0 125 132-294 8-135 (211)
494 cd02072 Glm_B12_BD B12 binding 79.7 5 0.00011 33.6 5.6 69 219-291 39-113 (128)
495 PF01680 SOR_SNZ: SOR/SNZ fami 79.5 12 0.00027 33.1 8.1 70 217-291 21-98 (208)
496 TIGR01036 pyrD_sub2 dihydrooro 79.1 5.3 0.00011 39.0 6.5 104 123-236 211-316 (335)
497 PRK05265 pyridoxine 5'-phospha 79.0 55 0.0012 30.4 13.1 123 139-296 27-157 (239)
498 KOG0623 Glutamine amidotransfe 79.0 7 0.00015 38.0 7.0 80 218-299 270-362 (541)
499 COG1519 KdtA 3-deoxy-D-manno-o 79.0 63 0.0014 32.5 13.9 76 217-294 183-268 (419)
500 COG3836 HpcH 2,4-dihydroxyhept 78.8 43 0.00094 31.1 11.7 152 141-322 30-205 (255)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=6e-87 Score=610.52 Aligned_cols=337 Identities=76% Similarity=1.163 Sum_probs=320.1
Q ss_pred CCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEeccccccc
Q 018519 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (354)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~ 83 (354)
++|++|||+.|+++||+.+|+||.|||+|+.|++.|+++|.||.|+||+|+|++.+|+||+++|++++.||+|||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
++|||||.+.|++|.++|++|++|+++++|+|||.+++| +..|||||.++|++++.++++|||++||++|++|+|+|..
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8999999999999999999999999999999999999999
Q ss_pred CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc----------------ccCCHHHHHHH
Q 018519 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK----------------GVLTAEDARIA 226 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~----------------Gi~~~~~a~~~ 226 (354)
|+|+.|++|+|.+|..++.++++........+....++..++....+|.+.|+ ||++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999999888887765433333344457777777788888886 99999999999
Q ss_pred HHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHH
Q 018519 227 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 306 (354)
Q Consensus 227 ~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~ 306 (354)
.++|+++|+||||||||+|..++++++|+|+.+++.+++||+.|||||+|.||+|||||||.+|++|||++|+++++|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 307 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 307 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
||+++++.|++|++.+|++.||.|++|+++..+.
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~ 354 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVL 354 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCcccee
Confidence 9999999999999999999999999999988544
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.7e-79 Score=591.80 Aligned_cols=346 Identities=91% Similarity=1.348 Sum_probs=307.1
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccc
Q 018519 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (354)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~ 82 (354)
.++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|.|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
+++||+||.++|++|+++|++|++|+++++++|||+++.+++.|||||.++|++.+.++++||+++||++|++|+|+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccc----------------cccCCHHHHHHH
Q 018519 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW----------------KGVLTAEDARIA 226 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----------------~Gi~~~~~a~~~ 226 (354)
|+|++|+|++|.+|..+..+++...............+..+.....++.++| |||++++||+++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 9999999999988866554443221100000001111222222223333444 499999999999
Q ss_pred HHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHH
Q 018519 227 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 306 (354)
Q Consensus 227 ~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~ 306 (354)
.++|+|+|+||||||||+|++++++++|+++++++.+++|||+|||||+|.|++|||+|||++|++||||+|++...|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCCCCC
Q 018519 307 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 348 (354)
Q Consensus 307 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~ 348 (354)
|++++++.+++||+..|.++|++++.++++..+.......+|
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~ 363 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 363 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCc
Confidence 999999999999999999999999999998887655433333
No 3
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5e-77 Score=577.94 Aligned_cols=338 Identities=38% Similarity=0.611 Sum_probs=300.1
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccc
Q 018519 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (354)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~ 82 (354)
.++|++|||+.||++||+++|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
+++||++|.++|++|+++|++|++|++++.++|||+++.+++.|||||.++|++.+.++++||+++||++|++|+|+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred CchhHHhhhccCCCCcCccccccC----------------------CccCcCcccchhhHHHHHhhhcCCc---------
Q 018519 163 GRREADIKNRFTLPPFLTLKNFQG----------------------LDLGKMDEANDSGLAAYVAGQIDRS--------- 211 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~--------- 211 (354)
|+|++|.|++|.+|.. +.+++.+ .............+..+.+...++.
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999987742 2222110 0000000000111222222223333
Q ss_pred -------ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 212 -------LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 212 -------~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
+.++||++.++|+++.++|+|+|+||||||||++..+++++.|+++++++++++|||+||||++|.|++|||+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 4445999999999999999999999999999999999999999999998866899999999999999999999
Q ss_pred cCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 018519 285 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 341 (354)
Q Consensus 285 lGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 341 (354)
|||++|++||||+|+++.+|++|+.++++.|++||+..|.++|+++++||++..+..
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 999999999999999999999999999999999999999999999999999887743
No 4
>PLN02535 glycolate oxidase
Probab=100.00 E-value=5.6e-77 Score=575.15 Aligned_cols=343 Identities=65% Similarity=0.999 Sum_probs=305.3
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEeccccc
Q 018519 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (354)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~ 81 (354)
++++|++|||+.||++||+.+|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|++||+++++||++||+++
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCC
Q 018519 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (354)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~ 161 (354)
+++.||++|.++|++|+++|+++++|+++++++|||++..+++.|||||.++|++.+.++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccc----------------cccCCHHHHHH
Q 018519 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW----------------KGVLTAEDARI 225 (354)
Q Consensus 162 ~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w----------------~Gi~~~~~a~~ 225 (354)
.|+|++|+|++|.+|. .+++...............+..+.....++.++| |||+++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998772 2222111000000000111222222223344444 49999999999
Q ss_pred HHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCH
Q 018519 226 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 305 (354)
Q Consensus 226 ~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~ 305 (354)
+.++|+|+|+|+||||+|+++++++++.|+++++++++++|||++|||+++.|++|||++||++|++||||+|++...|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999998876899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCCCC
Q 018519 306 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 347 (354)
Q Consensus 306 ~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~ 347 (354)
+|++++++.+++||+.+|.++|+.+++||+++.+....++.+
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999999988876666554
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=4.9e-76 Score=568.48 Aligned_cols=341 Identities=37% Similarity=0.572 Sum_probs=303.8
Q ss_pred CCCCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEeccccc
Q 018519 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (354)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~ 81 (354)
.+++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|+|||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhC-CCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC
Q 018519 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (354)
Q Consensus 82 ~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p 160 (354)
++++||+||.++|++|+++|++|++|++++.++|||+++. +++.|||||.++|++.+.++++||+++||++|++|+|+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 478999999999999999999999999999999999999
Q ss_pred CCCchhHHhhhccCCCCcCcccc--ccCCc---cC----cCccc-chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhC
Q 018519 161 RLGRREADIKNRFTLPPFLTLKN--FQGLD---LG----KMDEA-NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAG 230 (354)
Q Consensus 161 ~~g~r~~~~r~~~~~p~~~~~~~--~~~~~---~~----~~~~~-~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G 230 (354)
+.|+|++|+|++|.+|......+ +.... .. ..... .-..++.+.+.. ..++..|||.++++|+++.++|
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~G 249 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAG 249 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcC
Confidence 99999999999998774321111 00000 00 00000 112344444433 3455667999999999999999
Q ss_pred CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHH
Q 018519 231 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 310 (354)
Q Consensus 231 ~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~ 310 (354)
+|+|+||||||||++.++++++.|+++++++++++|||+||||+++.|++|||++|||+|++|||+||+++..|++|+.+
T Consensus 250 vd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~ 329 (367)
T TIGR02708 250 ASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQ 329 (367)
T ss_pred cCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhcccceeecc
Q 018519 311 VLEMLREEFELAMALSGCRSLKEITRDHIVTEW 343 (354)
Q Consensus 311 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~ 343 (354)
+++.|++||+..|.++|+++++||++..+...+
T Consensus 330 ~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~ 362 (367)
T TIGR02708 330 VFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNP 362 (367)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHhCccccccCC
Confidence 999999999999999999999999998885444
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=8e-76 Score=565.91 Aligned_cols=326 Identities=44% Similarity=0.686 Sum_probs=290.1
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCC
Q 018519 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (354)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~ 87 (354)
+|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|++++++||+|++||+++++||++||+++++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018519 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (354)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~ 167 (354)
+||.++|++|+++|++|++|+++++++|||+++.+++.|||||.+ +++.++++++||+++||++|++|+|+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988777899999996 6999999999999999999999999999999999
Q ss_pred HhhhccCCCCcCccccccCCc----------------cCcCc---ccchhhHHHHHhhhcCC----------------cc
Q 018519 168 DIKNRFTLPPFLTLKNFQGLD----------------LGKMD---EANDSGLAAYVAGQIDR----------------SL 212 (354)
Q Consensus 168 ~~r~~~~~p~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~~~~~----------------~~ 212 (354)
|.|++|.+|..++++++.+.. ..... .........+.....++ ++
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999888665544422110 00000 00000112222222223 34
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
..+||+++++|+++.++|+|+|+||||||||++..++++++|+++++++ ++|||+||||++|.||+|||+|||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4459999999999999999999999999999999999999999999987 59999999999999999999999999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 336 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 336 (354)
||||||+++..|++|++++++.|++||+..|.++|+++++||++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=2.9e-75 Score=566.61 Aligned_cols=334 Identities=41% Similarity=0.625 Sum_probs=294.6
Q ss_pred CCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEeccccccc
Q 018519 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (354)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~ 83 (354)
++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|+|||+++++||++||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 84 l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
++||++|.++|++|+++|++|++|+++++++|||++..+ ++.|||||.++|++.+.++++||+++||++|++|+|+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 7899999999999999999999999999999999999999
Q ss_pred CchhHHhhhccCCCCc--Ccccccc-C------C---ccCcCc------------------ccc-hhhHHHHHhhhcCCc
Q 018519 163 GRREADIKNRFTLPPF--LTLKNFQ-G------L---DLGKMD------------------EAN-DSGLAAYVAGQIDRS 211 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~--~~~~~~~-~------~---~~~~~~------------------~~~-~~~~~~~~~~~~~~~ 211 (354)
|+|++|.|++|. |.. .+..++. . . ...... ... -..++.+.+. ...+
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~-~~~p 255 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREW-TDLP 255 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHh-cCCC
Confidence 999999999983 421 1111100 0 0 000000 000 0112222222 1233
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
+..|||++.+||+++.++|+|+|+||||||||++++++++++|+++++++++++|||+||||++|.|++|||++|||+|+
T Consensus 256 vivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 256 IVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVL 335 (383)
T ss_pred EEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEE
Confidence 44459999999999999999999999999999999999999999999998778999999999999999999999999999
Q ss_pred EcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 018519 292 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 339 (354)
Q Consensus 292 igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 339 (354)
+||||+|+++..|++|++++++.+++||+..|.++|+++++||+++.+
T Consensus 336 iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 336 IGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred EcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 999999999999999999999999999999999999999999988653
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.6e-74 Score=555.86 Aligned_cols=336 Identities=42% Similarity=0.674 Sum_probs=300.3
Q ss_pred CCCChHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccc
Q 018519 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (354)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~ 82 (354)
+++|++|||+.||++||+++|+|++||++||.|+++|+.+|++|+|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhC-CCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCC
Q 018519 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (354)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~ 161 (354)
++.||++|.++|++|+++|+++++|+.+++++|||.++. +++.|||||.++|++.+.++++||+++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999886 4789999999999999999999999999999999999999
Q ss_pred CCchhHHhhhccCCCCcCccccccCCc--cCc--------Cccc-chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhC
Q 018519 162 LGRREADIKNRFTLPPFLTLKNFQGLD--LGK--------MDEA-NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAG 230 (354)
Q Consensus 162 ~g~r~~~~r~~~~~p~~~~~~~~~~~~--~~~--------~~~~-~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G 230 (354)
.|+|++|.|+++.+|.+....+..... ... .+.. .-..+..+.+.. ..++.-|||+++++|+.+.++|
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G 242 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAG 242 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcC
Confidence 999999999999888543322111000 000 0000 111233333332 3455567999999999999999
Q ss_pred CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHH
Q 018519 231 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 310 (354)
Q Consensus 231 ~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~ 310 (354)
+|+|+||||||+|+++++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++..|++|+.+
T Consensus 243 ~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~ 322 (351)
T cd04737 243 ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVAS 322 (351)
T ss_pred CCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHH
Confidence 99999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhhcccce
Q 018519 311 VLEMLREEFELAMALSGCRSLKEITRDHI 339 (354)
Q Consensus 311 ~l~~l~~el~~~m~~~G~~~i~~l~~~~l 339 (354)
+++.+++||+.+|.++|+++++|+++..|
T Consensus 323 ~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 323 VLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 99999999999999999999999987653
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=9.1e-73 Score=548.37 Aligned_cols=327 Identities=51% Similarity=0.770 Sum_probs=284.7
Q ss_pred HHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCChhhHHH
Q 018519 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (354)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~l 93 (354)
||++||+..|+||+||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhcc
Q 018519 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (354)
Q Consensus 94 a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~ 173 (354)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++||++|++|+|+|+.++|++|.|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccccccCCccCcC-------------cccchhhHHHHHhhhcCCcccc----------------cccCCHHHHH
Q 018519 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSW----------------KGVLTAEDAR 224 (354)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~w----------------~Gi~~~~~a~ 224 (354)
.+|..++.+++.+....+. .........++.....++.+.| |||++++||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9888776665543211100 0011222334444334444555 4999999999
Q ss_pred HHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcC
Q 018519 225 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 304 (354)
Q Consensus 225 ~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G 304 (354)
++.++|+|+|+||||||||+|++++++++|+++++++++++|||+|||||+|.|++|||+|||++|++||||+|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 305 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 305 ~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
++|+.++++.|++||+..|.++|+++++||+++.|+
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998764
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=3.1e-71 Score=534.59 Aligned_cols=329 Identities=44% Similarity=0.673 Sum_probs=292.8
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCC
Q 018519 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (354)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~ 87 (354)
+|||+.||++||+++|+|++||++||+|+++|+.+|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhh-CC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018519 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (354)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~-~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r 165 (354)
++|.++|++|.++|++|++|++++.++|+|.+. .| .+.|||||.++|++.+.+++++|+++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999876 34 7899999999999999999999999999999999999999999
Q ss_pred hHHhhhccCCCCcCccccccCCc--------cC-cCccc-chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEE
Q 018519 166 EADIKNRFTLPPFLTLKNFQGLD--------LG-KMDEA-NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGII 235 (354)
Q Consensus 166 ~~~~r~~~~~p~~~~~~~~~~~~--------~~-~~~~~-~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~ 235 (354)
++|+|++|.+|..++.++..... .. ..+.. .-..++.+.+. ...++.+|||.++++|+.+.++|+|+|+
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~PvivKgv~~~~dA~~a~~~G~d~I~ 239 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKH-TKLPIVLKGVQTVEDAVLAAEYGVDGIV 239 (344)
T ss_pred hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHh-cCCcEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 99999999877644433311000 00 00000 11224444433 3445667799999999999999999999
Q ss_pred EecCCcCCCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHH
Q 018519 236 VSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 312 (354)
Q Consensus 236 vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l 312 (354)
||||||++++..++++++|+++++.+ ++++|||++|||++|.|++|+|++||++|++||||++++.+.|++|+.+++
T Consensus 240 vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l 319 (344)
T cd02922 240 LSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAI 319 (344)
T ss_pred EECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHH
Confidence 99999999999999999999998854 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChhhhccc
Q 018519 313 EMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 313 ~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
+.+++||+.+|.++|+++++||+++
T Consensus 320 ~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 320 QILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999753
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2.7e-65 Score=489.26 Aligned_cols=304 Identities=90% Similarity=1.325 Sum_probs=265.9
Q ss_pred cceeeccccCCCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCc
Q 018519 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (354)
Q Consensus 45 ~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~ 124 (354)
=|.|+||+|+|++++||+|++||+++++||++||+++++++||++|.++|++|+++|++|++|++++.++|||+++.+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHH
Q 018519 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (354)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (354)
.|||||.++|++.+.++++||+++||++|++|+|+|+.|+|++|+||+|.+|...+.+++..................+.
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999886655555422110000000111122233
Q ss_pred hhhcCCcccc----------------cccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEE
Q 018519 205 AGQIDRSLSW----------------KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 268 (354)
Q Consensus 205 ~~~~~~~~~w----------------~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 268 (354)
....++.++| |||++.+||+++.++|+|+|+||||||+|+|++++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 2223344444 499999999999999999999999999999999999999999999887789999
Q ss_pred EcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccCCCCC
Q 018519 269 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 348 (354)
Q Consensus 269 ~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~~~~~ 348 (354)
+|||||+|.|++|||+||||+|++|||++|+++..|++|+.++++.+++||+..|.++|+++++++++..+......++|
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887655444433
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-62 Score=469.98 Aligned_cols=333 Identities=45% Similarity=0.659 Sum_probs=303.9
Q ss_pred hHHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccC
Q 018519 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (354)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~ 86 (354)
+.|+++.|++++| +.|+|+.+|+++|.|+++|+++|++|.|+||+|++++++||+|+++|+++++||++|||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchh
Q 018519 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (354)
Q Consensus 87 ~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~ 166 (354)
++++...+++|..+|.++++++++++++|++.+..+ ||+|...+++...++++++.++|++++++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999886644 9999989999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcCccccccCCccCc---Cc-ccchhhHHHHHhhhcCCccccc----------------ccCCHHHHHHH
Q 018519 167 ADIKNRFTLPPFLTLKNFQGLDLGK---MD-EANDSGLAAYVAGQIDRSLSWK----------------GVLTAEDARIA 226 (354)
Q Consensus 167 ~~~r~~~~~p~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~w~----------------Gi~~~~~a~~~ 226 (354)
+|.++++..|......|+......+ .. ......+.++.+...+|.++|+ ||++++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999998877555555543321111 00 0112246777877788999887 99999999999
Q ss_pred HHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHH
Q 018519 227 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 306 (354)
Q Consensus 227 ~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~ 306 (354)
.+.|+|+|++|||||+|+||+++++++|++++++++++++|++|||||+|.|++|||+||||+|++|||+||++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhcccceeeccC
Q 018519 307 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 344 (354)
Q Consensus 307 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~~~~ 344 (354)
||.++++.+++||+..|.++|+++|+||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998876543
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=1.1e-57 Score=435.27 Aligned_cols=299 Identities=59% Similarity=0.870 Sum_probs=274.0
Q ss_pred HHHHHHHHHhCCccccccccCCccchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCC
Q 018519 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (354)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~ 87 (354)
+|||+.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|+|++++.||+++||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhH
Q 018519 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (354)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~ 167 (354)
+++.++|++|+++|+++++|++++.+.+++.+..+++.|+|||...|++.+.++++++++.|+++|++|+|||+.+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988899999887778999999987799999999999999999999999999985433
Q ss_pred HhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCC
Q 018519 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYV 247 (354)
Q Consensus 168 ~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~ 247 (354)
. ....++++++... .++..++++++++|+.+.++|+|+|+|+||||++.+++
T Consensus 159 -----~----------------------~~~~i~~l~~~~~-~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g 210 (299)
T cd02809 159 -----L----------------------TWDDLAWLRSQWK-GPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGA 210 (299)
T ss_pred -----C----------------------CHHHHHHHHHhcC-CCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCC
Confidence 0 0012344444433 34555788999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhC
Q 018519 248 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 327 (354)
Q Consensus 248 ~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 327 (354)
+++++.|.++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++++.+++||+.+|.++|
T Consensus 211 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G 290 (299)
T cd02809 211 PATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLG 290 (299)
T ss_pred cCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999988657999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCChhhhcc
Q 018519 328 CRSLKEITR 336 (354)
Q Consensus 328 ~~~i~~l~~ 336 (354)
+++++||++
T Consensus 291 ~~~i~~l~~ 299 (299)
T cd02809 291 CASLADLDP 299 (299)
T ss_pred CCCHHHhCc
Confidence 999999963
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=1.6e-37 Score=299.39 Aligned_cols=273 Identities=26% Similarity=0.333 Sum_probs=210.3
Q ss_pred HhHhhcccceeeccccC--CCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC--CC
Q 018519 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS 113 (354)
Q Consensus 38 ~N~~~~~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~--~~ 113 (354)
.+...||+|+|+|+.|+ +++++||+|+|+|+++++||+++||+|++....+.+..+|++|+++|+++++++.+. ..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35668999999999998 789999999999999999999999987653333446799999999999999998742 12
Q ss_pred ------HHHHHhhCC-CceEEEEeecC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccc
Q 018519 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (354)
Q Consensus 114 ------~eei~~~~~-~~~~~QLy~~~----d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~ 182 (354)
.+.+++..+ .+++.++.... +.+... +..+..+++++.+++++++. ..+|.+. +
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~---~~i~~~~adalel~l~~~q~----------~~~~~~~--~ 161 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR---RAVEMIEADALAIHLNPLQE----------AVQPEGD--R 161 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCcchHh----------hcCCCCC--c
Confidence 233444555 66666665533 333333 33445689999999987652 2223321 1
Q ss_pred cccCCccCcCcccchhhHHHHHhhhcCCccccc-cc-CCHHHHHHHHHhCCCEEEEecCCcC---------C--------
Q 018519 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-GV-LTAEDARIAVQAGAAGIIVSNHGAR---------Q-------- 243 (354)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-Gi-~~~~~a~~~~~~G~d~I~vs~~gg~---------~-------- 243 (354)
.+.+ ....++.+++....|.+.+. |. ++.++|+.+.++|+|+|+||||||+ +
T Consensus 162 df~~---------~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~ 232 (326)
T cd02811 162 DFRG---------WLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLA 232 (326)
T ss_pred CHHH---------HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccc
Confidence 1110 11235556655444544432 22 7899999999999999999999884 1
Q ss_pred ---CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 244 ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 244 ---~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
.+++.++.+.|.++++++. ++|||++|||+++.|++|+|++|||+|++|||||+++.. |++++.++++.+.+||+
T Consensus 233 ~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~ 310 (326)
T cd02811 233 EYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELR 310 (326)
T ss_pred cccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 2347788889999888764 799999999999999999999999999999999998877 99999999999999999
Q ss_pred HHHHHhCCCChhhhcc
Q 018519 321 LAMALSGCRSLKEITR 336 (354)
Q Consensus 321 ~~m~~~G~~~i~~l~~ 336 (354)
.+|.++|+++++||++
T Consensus 311 ~~m~~~G~~si~el~~ 326 (326)
T cd02811 311 TAMFLTGAKNLAELKQ 326 (326)
T ss_pred HHHHHhCCCCHHHhcC
Confidence 9999999999999963
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=5.6e-37 Score=298.15 Aligned_cols=281 Identities=25% Similarity=0.328 Sum_probs=217.5
Q ss_pred HhhcccceeeccccC--CCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC--CCH-
Q 018519 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSV- 114 (354)
Q Consensus 40 ~~~~~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~--~~~- 114 (354)
...||+|+|+|+.|+ +.++|||+|+|+|.++++||+++||++++-...+.+.+||++|+++|+++++++++. .+.
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 357999999999998 789999999999999999999999998752223446799999999999999998852 122
Q ss_pred -----HHHHhhCC-CceEEEEeecCChHHHHH-HHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCC
Q 018519 115 -----EEVASTGP-GIRFFQLYVYKDRNVVAQ-LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (354)
Q Consensus 115 -----eei~~~~~-~~~~~QLy~~~d~~~~~~-~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~ 187 (354)
+.+++.+| .|++.+|+.+.......+ ..+.++..+++++.+++++++. ..+|.+. +.+..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p~g~--~~f~~- 173 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQPEGD--RDFRG- 173 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCCCCc--ccHHH-
Confidence 23344455 677787766433233222 3334555689999999988752 2223321 11110
Q ss_pred ccCcCcccchhhHHHHHhhhcCCccccccc---CCHHHHHHHHHhCCCEEEEecCCcC---------C---------CCC
Q 018519 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKGV---LTAEDARIAVQAGAAGIIVSNHGAR---------Q---------LDY 246 (354)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi---~~~~~a~~~~~~G~d~I~vs~~gg~---------~---------~~~ 246 (354)
....++++++....|.+ .|++ ++.++|+.+.++|+|+|+|+||||+ + .++
T Consensus 174 --------~le~i~~i~~~~~vPVi-vK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~ 244 (352)
T PRK05437 174 --------WLDNIAEIVSALPVPVI-VKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADW 244 (352)
T ss_pred --------HHHHHHHHHHhhCCCEE-EEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccc
Confidence 11224555554444443 4432 7899999999999999999999883 2 246
Q ss_pred CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHh
Q 018519 247 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 326 (354)
Q Consensus 247 ~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~ 326 (354)
+.++.+.|.++++++ .++|||++|||+++.|++|+|++|||+|++|||+++++...|.+++.++++.+.+||+.+|..+
T Consensus 245 g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~ 323 (352)
T PRK05437 245 GIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLT 323 (352)
T ss_pred cCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999998874 3799999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCChhhhcccceeecc
Q 018519 327 GCRSLKEITRDHIVTEW 343 (354)
Q Consensus 327 G~~~i~~l~~~~l~~~~ 343 (354)
|+++++||++..+...+
T Consensus 324 G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 324 GAKNIAELRKVPLVLSG 340 (352)
T ss_pred CCCCHHHhCCCCEEecH
Confidence 99999999988776554
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=1.3e-35 Score=286.94 Aligned_cols=279 Identities=25% Similarity=0.319 Sum_probs=209.6
Q ss_pred hhcccceeeccccC--CCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCC--CH--
Q 018519 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SV-- 114 (354)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~--~~-- 114 (354)
+.||+|+|+|..|+ +++++||||+|+|+++++||+++||+|++-.....+..++++|+++|+++++++.+.. ..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 46999999999996 5789999999999999999999999876522223367999999999999999987521 12
Q ss_pred ----HHHHhhCC-CceEEEEeecCChHH-HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCc
Q 018519 115 ----EEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (354)
Q Consensus 115 ----eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~ 188 (354)
..+++..+ .|.+.+|......+. ..+..+.++..+++++.+++++++. ..+|++. +.+.+
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p~g~--~~f~~-- 166 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQPEGD--RNFKG-- 166 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCCCCC--cCHHH--
Confidence 23334344 566666654222111 3333444555688999999988762 2234331 11211
Q ss_pred cCcCcccchhhHHHHHhhhcCCccccc-c-cCCHHHHHHHHHhCCCEEEEecCCcCC------------------CCCCc
Q 018519 189 LGKMDEANDSGLAAYVAGQIDRSLSWK-G-VLTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVP 248 (354)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~-G-i~~~~~a~~~~~~G~d~I~vs~~gg~~------------------~~~~~ 248 (354)
....++.+++....|.+.+. | -++.++|+.+.++|+|+|+|+|+||++ .+++.
T Consensus 167 -------~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~ 239 (333)
T TIGR02151 167 -------WLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGI 239 (333)
T ss_pred -------HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccH
Confidence 11234555555444544332 2 178999999999999999999998863 23467
Q ss_pred ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCC
Q 018519 249 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 328 (354)
Q Consensus 249 ~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 328 (354)
++.+.|.++++ +..++|||++|||+++.|++|+|++|||+|++|||+|..+...|++++.++++.+.+||+.+|.++|+
T Consensus 240 ~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~ 318 (333)
T TIGR02151 240 PTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGA 318 (333)
T ss_pred hHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77788888876 22379999999999999999999999999999999999887789999999999999999999999999
Q ss_pred CChhhhcccceee
Q 018519 329 RSLKEITRDHIVT 341 (354)
Q Consensus 329 ~~i~~l~~~~l~~ 341 (354)
++++||++..+..
T Consensus 319 ~~i~el~~~~~~~ 331 (333)
T TIGR02151 319 KTIAELKKVPLVI 331 (333)
T ss_pred CCHHHHccCCeEe
Confidence 9999999876654
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.96 E-value=2.6e-27 Score=226.43 Aligned_cols=254 Identities=19% Similarity=0.235 Sum_probs=185.0
Q ss_pred hcccceeeccccC--CCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-
Q 018519 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (354)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (354)
.||+++|+|..|+ +++++|++|+|+|++++.||++++|.. ..+..||++|+++|...++.-+ ++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999996 467999999999999999999999942 4588999999999999888652 555543
Q ss_pred ---hhCCCceEEEEeecCChHHHHHHHHHHHHcCC--CEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCc
Q 018519 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (354)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~--~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~ 193 (354)
+..+...+..+-...+++.. +.++...++|+ ++|+|++-.++.
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD~a~gh~------------------------------- 124 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITIDIAHGHS------------------------------- 124 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEECCCCch-------------------------------
Confidence 22332234444443334433 44455556654 887764422210
Q ss_pred ccchhh-HHHHHhhhcCCccccc-ccCCHHHHHHHHHhCCCEEEEecCCcCCC------CCCcCh--HHHHHHHHHHhcC
Q 018519 194 EANDSG-LAAYVAGQIDRSLSWK-GVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPAT--IMALEEVVKATQG 263 (354)
Q Consensus 194 ~~~~~~-~~~~~~~~~~~~~~w~-Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~------~~~~~~--~~~l~~i~~~~~~ 263 (354)
....+ ++.+.+.... .+.+. .|.+.++++.+.++|+|+|.|++|||++. ..+.++ +..+.++++.+
T Consensus 125 -~~~~e~I~~ir~~~p~-~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-- 200 (326)
T PRK05458 125 -DSVINMIQHIKKHLPE-TFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-- 200 (326)
T ss_pred -HHHHHHHHHHHhhCCC-CeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--
Confidence 00111 3333333222 33444 48899999999999999999999999652 124564 44688888877
Q ss_pred CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH------------------HHH-----hh-------cCHH-------
Q 018519 264 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV------------------YSL-----AA-------EGEK------- 306 (354)
Q Consensus 264 ~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l------------------~~~-----~~-------~G~~------- 306 (354)
++|||++|||+++.|++|||++|||+||+|++|+ .-+ .. .|.+
T Consensus 201 ~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G 280 (326)
T PRK05458 201 RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKG 280 (326)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccC
Confidence 7999999999999999999999999999999987 111 01 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 307 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 307 gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
.+.+++..+..+|+..|.++|++++.||++..+.
T Consensus 281 ~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v 314 (326)
T PRK05458 281 SLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYV 314 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEE
Confidence 4788999999999999999999999999975443
No 18
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.96 E-value=2.8e-27 Score=225.28 Aligned_cols=256 Identities=21% Similarity=0.232 Sum_probs=183.6
Q ss_pred hcccceeeccccCC--CCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-
Q 018519 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (354)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (354)
.||+++|+|+.++. ++++|++|+|++++++.||++++|.. ..|..||++|+++|...++..+ ++|+..
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 69999999999974 57999999999999999999999942 4588999999999999999763 465533
Q ss_pred ---hhCCCceEEEEeecCChHHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCc
Q 018519 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (354)
Q Consensus 119 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~ 193 (354)
+..+....+.+-.....+.. +.+....++| .+.|++ |+.+ | .+ ..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-g---------~s------~~----------- 123 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-G---------HS------NS----------- 123 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc-C---------ch------HH-----------
Confidence 22232223333333333332 4445555667 566655 4443 1 11 00
Q ss_pred ccchhhHHHHHhhhcCCcccccc-cCCHHHHHHHHHhCCCEEEEecCCcCCC--------CCCcChHHHHHHHHHHhcCC
Q 018519 194 EANDSGLAAYVAGQIDRSLSWKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGR 264 (354)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~G-i~~~~~a~~~~~~G~d~I~vs~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ 264 (354)
-...++.+.+.... ++...| |.+.++|+.+.++|||+|.|++|+|+.. ..+.+.++++.++++++ +
T Consensus 124 --~~~~i~~i~~~~p~-~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~ 198 (321)
T TIGR01306 124 --VINMIKHIKTHLPD-SFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--R 198 (321)
T ss_pred --HHHHHHHHHHhCCC-CEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--C
Confidence 01123444433322 334444 8999999999999999999998877532 12233567899999877 7
Q ss_pred ccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH--------------------HHHhh----------cCH-------HH
Q 018519 265 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA----------EGE-------KG 307 (354)
Q Consensus 265 i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l--------------------~~~~~----------~G~-------~g 307 (354)
+|||+||||+++.|++|||++|||+||+||+|- |++.. .|. ..
T Consensus 199 ~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~ 278 (321)
T TIGR01306 199 KPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGS 278 (321)
T ss_pred CeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCC
Confidence 999999999999999999999999999999882 11110 010 13
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 018519 308 VRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 341 (354)
Q Consensus 308 v~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 341 (354)
+.+++..+...|++.|.++|+++++||++..+..
T Consensus 279 ~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 279 LSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 7889999999999999999999999999775554
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.95 E-value=1.7e-26 Score=218.28 Aligned_cols=256 Identities=20% Similarity=0.207 Sum_probs=184.7
Q ss_pred hhcccceeecccc--CCCCCCccceeEcCe-----eeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCC
Q 018519 41 NAFSRILFRPRIL--IDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (354)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~st~l~g~-----~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (354)
..|+++.|+|+.. .+.+++||+++|..+ .+..||+-|.|-..+ +..+|.+.+++|..++++-+ .+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~------~~~mA~~la~~g~~~~iHk~--~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVG------TFEMAAALSQHSIFTAIHKH--YS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCccc------CHHHHHHHHHCCCeEEEeeC--CC
Confidence 4799999999743 456899999999743 789999999997655 78999999999999999753 46
Q ss_pred HHHHHh----hCCCc-eEEEEeecCChHHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccC
Q 018519 114 VEEVAS----TGPGI-RFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (354)
Q Consensus 114 ~eei~~----~~~~~-~~~QLy~~~d~~~~~~~~~~a~~~--G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~ 186 (354)
+|+..+ ..+.. ..+-+-....+ ...+.++...++ ++++|+|+ +.+ +.+ ..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~~-~d~er~~~L~~a~~~~d~iviD--~Ah----------Ghs------~~---- 136 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSSD-NDLEKMTSILEAVPQLKFICLD--VAN----------GYS------EH---- 136 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccCH-HHHHHHHHHHhcCCCCCEEEEE--CCC----------CcH------HH----
Confidence 665432 12211 11111122222 233555555666 47777664 443 111 00
Q ss_pred CccCcCcccchhhHHHHHhhhcCCcccccc-cCCHHHHHHHHHhCCCEEEEe-----cCCcCCCCCC-cChHHHHHHHHH
Q 018519 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYV-PATIMALEEVVK 259 (354)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G-i~~~~~a~~~~~~G~d~I~vs-----~~gg~~~~~~-~~~~~~l~~i~~ 259 (354)
-...++.+.+ .......+.| |.++|+|+.++++|||+|.|+ +|++|+.++. .|.+++|+++++
T Consensus 137 ---------~i~~ik~ir~-~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 137 ---------FVEFVKLVRE-AFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred ---------HHHHHHHHHh-hCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 0111233333 2222445566 999999999999999999998 8899998875 499999999999
Q ss_pred HhcC-CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH--------------------HHhh----------------
Q 018519 260 ATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA---------------- 302 (354)
Q Consensus 260 ~~~~-~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~--------------------~~~~---------------- 302 (354)
++++ ++|||+||||+++.||+|||++|||+||+|+.+.- +++.
T Consensus 207 aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~ 286 (343)
T TIGR01305 207 AAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRA 286 (343)
T ss_pred HhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCccccccc
Confidence 9876 79999999999999999999999999999976521 1111
Q ss_pred -cCH-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 303 -EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 303 -~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.|. ..+.+++..+...|+..|.++|+.+|+||++.
T Consensus 287 ~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 287 SEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred ccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 13788999999999999999999999999644
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.94 E-value=1.5e-25 Score=218.35 Aligned_cols=267 Identities=19% Similarity=0.236 Sum_probs=184.3
Q ss_pred hhcccceeeccccC--CCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCC----CCCCH
Q 018519 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (354)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~----~~~~~ 114 (354)
..||++.|+|. +. +.+++||++.+.++.+..||+++||.+.+ +..+|.+++++|...+++.. ...+.
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 37999999998 54 56889999999999999999999998876 67999999999998777721 12344
Q ss_pred HHHHh----hCC------------Cce---------------EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 115 EEVAS----TGP------------GIR---------------FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 115 eei~~----~~~------------~~~---------------~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
+++.+ ..+ .|+ .+.+....++....+.++.+.++|+++|.++..+.-
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~-- 166 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVS-- 166 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchh--
Confidence 44332 100 111 121111122333456666677777777777542110
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcC-
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR- 242 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~- 242 (354)
- .+..+. .....+.++++....|.+. .+|.+.++|+.++++|||+|.++.++|.
T Consensus 167 -----~--~h~~~~-----------------~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~Gs~ 221 (368)
T PRK08649 167 -----A--EHVSKE-----------------GEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGPGAA 221 (368)
T ss_pred -----h--hccCCc-----------------CCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCcC
Confidence 0 000000 0122345555554444444 4689999999999999999998644442
Q ss_pred -----CCCCCcChHHHHHHHHHHhc--------CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhc------
Q 018519 243 -----QLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------ 303 (354)
Q Consensus 243 -----~~~~~~~~~~~l~~i~~~~~--------~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~------ 303 (354)
....+.|.+.++.+++++.+ .++|||++|||+++.|++|||++|||+||+|++|+-..-+.
T Consensus 222 ~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~ 301 (368)
T PRK08649 222 CTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHW 301 (368)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCccccc
Confidence 12346788888888765431 15999999999999999999999999999999987533221
Q ss_pred -----------CH-------HHHHHHHH----------HHHHHHHHHHHHhCCCChhhhcccceee
Q 018519 304 -----------GE-------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 341 (354)
Q Consensus 304 -----------G~-------~gv~~~l~----------~l~~el~~~m~~~G~~~i~~l~~~~l~~ 341 (354)
|. ..+++++. .+...|++.|.++|+.+|+||++..+..
T Consensus 302 gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 302 GMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcccCCCcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 13677877 9999999999999999999999876653
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.94 E-value=3.7e-26 Score=222.05 Aligned_cols=272 Identities=19% Similarity=0.257 Sum_probs=182.3
Q ss_pred HHHHhHhhcccceeecc-ccCCCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCC----
Q 018519 35 TLQENRNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW---- 109 (354)
Q Consensus 35 t~~~N~~~~~~i~l~pr-~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~---- 109 (354)
+.|+ ...||+|.|+|. ..++.+++||++++.+.+++.||++|||++.+ +.+|+.+|+++|.+.+++..
T Consensus 8 ~~~~-~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~ 80 (369)
T TIGR01304 8 TARR-TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWG 80 (369)
T ss_pred cccc-cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHh
Confidence 3444 358999999995 66788999999999999999999999999887 77999999999997777641
Q ss_pred CCCCHHHH----HhhCCCc-------eEEEEee-cCChHH-----------------------HHHHHHHHHHcCCCEEE
Q 018519 110 STSSVEEV----ASTGPGI-------RFFQLYV-YKDRNV-----------------------VAQLVRRAERAGFKAIA 154 (354)
Q Consensus 110 ~~~~~eei----~~~~~~~-------~~~QLy~-~~d~~~-----------------------~~~~~~~a~~~G~~ai~ 154 (354)
.....+.+ ....+.+ ...++|. +.+++. ..+.++.++++|++.|.
T Consensus 81 ~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 81 RHEDPDPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLV 160 (369)
T ss_pred cCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEE
Confidence 11122211 1100000 0000110 123333 33444555555555555
Q ss_pred EecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEE
Q 018519 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGI 234 (354)
Q Consensus 155 i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I 234 (354)
++--. + + ..+. .+ ......+.++++....|.+. .++.+.++|+.+.++|||+|
T Consensus 161 ihgrt-----~--~--q~~~----------sg-------~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV 213 (369)
T TIGR01304 161 IQGTL-----V--S--AEHV----------ST-------SGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGV 213 (369)
T ss_pred Eeccc-----h--h--hhcc----------CC-------CCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEE
Confidence 54100 0 0 0000 00 01122356666665555554 57899999999999999999
Q ss_pred EEecCCcCC----CCCCcChHHHHHHHHHHhc--------CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhh
Q 018519 235 IVSNHGARQ----LDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 302 (354)
Q Consensus 235 ~vs~~gg~~----~~~~~~~~~~l~~i~~~~~--------~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~ 302 (354)
.++.+|+.. +..+.|+...+.++.++.+ ..+|||++|||+++.|++|||++|||+||+|++|+.+.-+
T Consensus 214 ~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 214 IVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEA 293 (369)
T ss_pred EECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcC
Confidence 955444432 2346788888888765432 1499999999999999999999999999999999875433
Q ss_pred cCH-----------------------HH----HHHHH----------HHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 303 EGE-----------------------KG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 303 ~G~-----------------------~g----v~~~l----------~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
.|. .| +++++ ..|..-|++.|..+|+.+++||++..+.
T Consensus 294 pg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 294 PGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 211 12 55555 4788899999999999999999987664
No 22
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.93 E-value=4.9e-24 Score=210.43 Aligned_cols=269 Identities=23% Similarity=0.236 Sum_probs=176.5
Q ss_pred CCccceeEcC-----eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeec
Q 018519 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (354)
Q Consensus 58 ~vd~st~l~g-----~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~ 132 (354)
.++.++++++ ..+..||+++||+++.+ .++...+++.++++.|+...+++. ..+.+++.... ....|+ ..
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~-~~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQV-AS 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEe-cC
Confidence 3344666654 45689999999998774 445567999999999999999875 45677765332 244554 22
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCC---Cc-----hhH-HhhhccCCCCcCccccccCCccCcCcccchhhH---
Q 018519 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL---GR-----REA-DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL--- 200 (354)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~---g~-----r~~-~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (354)
.......+.++ .+++|.+-++.-.+ |- +.. ++..-..++.+. ..+... .+.+-.....+
T Consensus 134 ~~fGv~~~~~~-----~~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~--~~isp~--~~~~~~~~~~l~~~ 204 (392)
T cd02808 134 GRFGVRPEYLN-----KADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGV--DLISPP--PHHDIYSIEDLAQL 204 (392)
T ss_pred CCCccCHHHcc-----cCcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCc--cccCCC--CCCCCCCHHHHHHH
Confidence 22222222222 26777777663221 10 000 000000011110 000000 00000111122
Q ss_pred -HHHHhhhcCCcccccccC--CHHHHHHHHHhC-CCEEEEecCCcCC--------CCCCcChHHHHHHHHHHh-----cC
Q 018519 201 -AAYVAGQIDRSLSWKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QG 263 (354)
Q Consensus 201 -~~~~~~~~~~~~~w~Gi~--~~~~a~~~~~~G-~d~I~vs~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~ 263 (354)
..+.+.....++..+.+. +.+++.++.+.| +|+|+|+||+|.+ .+++.|+...|+++.+++ ++
T Consensus 205 I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~ 284 (392)
T cd02808 205 IEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRD 284 (392)
T ss_pred HHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCC
Confidence 223322221345555332 577777777666 9999999996542 356899999999998876 24
Q ss_pred CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhc-----------------------------CHHHHHHHHHH
Q 018519 264 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEM 314 (354)
Q Consensus 264 ~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~gv~~~l~~ 314 (354)
++|||++|||+++.|++|+|++|||+|.+||++|+++.|. |++++.++++.
T Consensus 285 ~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~ 364 (392)
T cd02808 285 RVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKS 364 (392)
T ss_pred CCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHH
Confidence 7999999999999999999999999999999999988654 77899999999
Q ss_pred HHHHHHHHHHHhCCCChhhhccccee
Q 018519 315 LREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 315 l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
+.+||+.+|..+|++++++++++++.
T Consensus 365 ~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 365 LAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred HHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 99999999999999999999988765
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.93 E-value=4.9e-24 Score=205.52 Aligned_cols=257 Identities=23% Similarity=0.269 Sum_probs=184.8
Q ss_pred hcccceeecccc-CCCCCCccceeEcC-eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHh
Q 018519 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (354)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~st~l~g-~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (354)
.||++.|+|... .+.++||++|+|.+ ..++.||+.|||.+.+ +..++.+++++|...++... .+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~~--~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHRN--MSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeCC--CCHHHHHH
Confidence 699999999754 46789999999987 8899999999998876 67999999999998888643 45555432
Q ss_pred ----hCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCccc
Q 018519 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (354)
Q Consensus 120 ----~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (354)
..+.....+.. +.+ ....+.++.+.++|++.|++++.... .. .
T Consensus 75 ~i~~vk~~l~v~~~~-~~~-~~~~~~~~~l~eagv~~I~vd~~~G~---~~----------------~------------ 121 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTR-EDDKERAEALVEAGVDVIVIDSAHGH---SV----------------Y------------ 121 (325)
T ss_pred HHHHhccCceEEEec-CCC-hhHHHHHHHHHhcCCCEEEEECCCCC---cH----------------H------------
Confidence 22222233332 223 23456677777899999888653211 00 0
Q ss_pred chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcC------CCCCCcChHHHHHHHHHHhcC-CccEE
Q 018519 196 NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQG-RIPVF 268 (354)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~i~vi 268 (354)
....++++.+.....++....+.+.++|+.+.++|+|+|+|+..+|. ...++.|++..+.++.+++.. ++|||
T Consensus 122 ~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 122 VIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred HHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 00112333332211123334578999999999999999999543221 234678999999999887643 69999
Q ss_pred EcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhc------------------------------------------C--
Q 018519 269 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------------------G-- 304 (354)
Q Consensus 269 ~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~------------------------------------------G-- 304 (354)
++|||+++.|++|||++|||+||+||.|+-..-+. |
T Consensus 202 A~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~ 281 (325)
T cd00381 202 ADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVE 281 (325)
T ss_pred ecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceE
Confidence 99999999999999999999999999886421110 1
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 018519 305 -----EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 339 (354)
Q Consensus 305 -----~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 339 (354)
...+.+.+..+...|++.|.++|+.+|+||++...
T Consensus 282 ~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 282 GIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 01378899999999999999999999999987643
No 24
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=1.1e-22 Score=199.21 Aligned_cols=256 Identities=19% Similarity=0.235 Sum_probs=178.7
Q ss_pred hhcccceeecccc-CCCCCCccceeEc-CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|... ...+++|++|.|. .+.+..||+.|||.+.+ +..+|.+.+++|...+++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 5799999999754 3567899999885 56788999999998765 6699999999999999974 45676543
Q ss_pred hh------CC--CceE------------------E------------------------EEee----cCChHHHHHHHHH
Q 018519 119 ST------GP--GIRF------------------F------------------------QLYV----YKDRNVVAQLVRR 144 (354)
Q Consensus 119 ~~------~~--~~~~------------------~------------------------QLy~----~~d~~~~~~~~~~ 144 (354)
+. .. .... + ||+. ...++ +.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~-~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDID-TIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHH-HHHHHHH
Confidence 21 00 0000 0 0111 11222 4566777
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCCcccccccCCHHHH
Q 018519 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLSWKGVLTAEDA 223 (354)
Q Consensus 145 a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~Gi~~~~~a 223 (354)
+.++|++.|+|..-.+.. . .... ++.+.+...+..+.-.+|.+.++|
T Consensus 161 lv~aGvDvI~iD~a~g~~--------------~------------------~~~~~v~~ik~~~p~~~vi~g~V~T~e~a 208 (404)
T PRK06843 161 LVKAHVDILVIDSAHGHS--------------T------------------RIIELVKKIKTKYPNLDLIAGNIVTKEAA 208 (404)
T ss_pred HHhcCCCEEEEECCCCCC--------------h------------------hHHHHHHHHHhhCCCCcEEEEecCCHHHH
Confidence 778899988874432210 0 0111 223322221222334478999999
Q ss_pred HHHHHhCCCEEEEecCCc-----CCCC-CCcChHHHHHHHHHHhc-CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 224 RIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 224 ~~~~~~G~d~I~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+.+.++|+|+|.++...| ++.+ .+.|.+..+.++.+.+. .++|||++|||+++.|++|||++||++||+|++|
T Consensus 209 ~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 209 LDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred HHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 999999999999854322 3333 46788888877777653 3799999999999999999999999999999988
Q ss_pred HH--------------------HHhh-------------------------cCHH-------HHHHHHHHHHHHHHHHHH
Q 018519 297 VY--------------------SLAA-------------------------EGEK-------GVRRVLEMLREEFELAMA 324 (354)
Q Consensus 297 l~--------------------~~~~-------------------------~G~~-------gv~~~l~~l~~el~~~m~ 324 (354)
.- +++. .|.+ .+.+++..+...|+..|.
T Consensus 289 agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~ 368 (404)
T PRK06843 289 AGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMG 368 (404)
T ss_pred eeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 42 1111 0100 178899999999999999
Q ss_pred HhCCCChhhhccc
Q 018519 325 LSGCRSLKEITRD 337 (354)
Q Consensus 325 ~~G~~~i~~l~~~ 337 (354)
++|+.+|.||+..
T Consensus 369 y~Ga~~i~el~~~ 381 (404)
T PRK06843 369 YLGAATISDLKIN 381 (404)
T ss_pred ccCCCcHHHHHhc
Confidence 9999999999843
No 25
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-22 Score=194.50 Aligned_cols=250 Identities=24% Similarity=0.295 Sum_probs=190.2
Q ss_pred EcCeeeccceEecccccccccCChhhHHHHHHHHHcCC-cEEecCCCCC-C-----HHHHHh--hC--CCceEEEEeecC
Q 018519 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS-S-----VEEVAS--TG--PGIRFFQLYVYK 133 (354)
Q Consensus 65 l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~-~~~~s~~~~~-~-----~eei~~--~~--~~~~~~QLy~~~ 133 (354)
+....+..++++|||.+.+ |.++++.++++|. ..++|+|.+. . -+.... .. ..|..+||+. .
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-s 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGG-S 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecC-C
Confidence 4556778899999999988 8899999999999 8999998532 1 111111 11 2678999975 7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhc-CC-
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQI-DR- 210 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~- 210 (354)
|++.+.+.++.+++.|++.|+||++||++ + + ...+.+..++.+. +.... +++.++... .|
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~--~-------V-~~~g~Ga~Ll~~p-------~lv~~iv~a~~~av~~iPV 139 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP--K-------V-VKGGAGAALLKNP-------ELLAEIVKAMVEAVGDIPV 139 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH--H-------h-cCCCcchhhcCCH-------HHHHHHHHHHHHhhCCCCe
Confidence 99999999999999999999999999984 1 1 1233344444321 12223 333444442 34
Q ss_pred ----cccccc--cCCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHH
Q 018519 211 ----SLSWKG--VLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 282 (354)
Q Consensus 211 ----~~~w~G--i~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ka 282 (354)
+++|+. +...+.++.+.++|++.++| ||++ |.+.+++.|+.|.++++.++. +|||++|+|.|.+|+.+.
T Consensus 140 TVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~ 216 (323)
T COG0042 140 TVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IPVIANGDIKSLEDAKEM 216 (323)
T ss_pred EEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-CeEEeCCCcCCHHHHHHH
Confidence 467763 34678899999999999999 7765 667788999999999999943 999999999999999999
Q ss_pred HH-cCcCEEEEcH-----HHHHHH---hhcCH---HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccceee
Q 018519 283 LA-LGASGIFIGR-----PVVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 341 (354)
Q Consensus 283 la-lGAd~V~igr-----~~l~~~---~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~~ 341 (354)
|. .|+|+||+|| ||+|.. ...|+ ....+.++.+..+++.+....|...+..++++..+.
T Consensus 217 l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~ 287 (323)
T COG0042 217 LEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYY 287 (323)
T ss_pred HHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99 6899999999 777763 22343 467788999999999999999977888888775543
No 26
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.90 E-value=3.2e-22 Score=192.48 Aligned_cols=257 Identities=24% Similarity=0.305 Sum_probs=170.9
Q ss_pred hcccceeeccc---cCCCCCCccceeE-cCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHH
Q 018519 42 AFSRILFRPRI---LIDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (354)
Q Consensus 42 ~~~~i~l~pr~---l~~~~~vd~st~l-~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei 117 (354)
.||++.|+|.. +++..++||++.+ .+.+++.||+-|||...+ +..+|.+.++.|...++.-. .++|+-
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~~--~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHRN--MSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEESS--SCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecCC--CCHHHH
Confidence 69999999976 4456667777666 689999999999997666 77999999999999999754 455432
Q ss_pred H-------hhCC-------CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCcccc
Q 018519 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (354)
Q Consensus 118 ~-------~~~~-------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~ 183 (354)
. +..| +...+=.-..... ...+.++...++|++.|+|+. .+ | .. ..
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~-g---------~s-------~~ 135 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH-G---------HS-------EH 135 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS-T---------TS-------HH
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC-c---------cH-------HH
Confidence 2 2111 1222211222122 123556666778999988753 32 1 10 00
Q ss_pred ccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCC------CCCCcChHHHHHHH
Q 018519 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEV 257 (354)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~------~~~~~~~~~~l~~i 257 (354)
....++.+.+...+.++.-.+|.+.+.++.++++|||+|.|.-.+|.- .-.|.|.+.++.++
T Consensus 136 ------------~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~ 203 (352)
T PF00478_consen 136 ------------VIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYEC 203 (352)
T ss_dssp ------------HHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHH
T ss_pred ------------HHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHH
Confidence 011133333332222333335889999999999999999996444431 23478999999999
Q ss_pred HHHhcC-CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH--------------------HHHhh--------------
Q 018519 258 VKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA-------------- 302 (354)
Q Consensus 258 ~~~~~~-~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l--------------------~~~~~-------------- 302 (354)
+++..+ .+|||+||||+++.|++|||++|||+||+|++|- |+++.
T Consensus 204 a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry 283 (352)
T PF00478_consen 204 AEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRY 283 (352)
T ss_dssp HHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTC
T ss_pred HHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhc
Confidence 988753 7999999999999999999999999999999772 11110
Q ss_pred ----------cCH-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 018519 303 ----------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 338 (354)
Q Consensus 303 ----------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 338 (354)
+|. ..+.+++..|...|+..|.++|+.+|+||++..
T Consensus 284 ~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 284 FQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 111 237899999999999999999999999998763
No 27
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.89 E-value=5e-22 Score=191.39 Aligned_cols=249 Identities=18% Similarity=0.205 Sum_probs=177.3
Q ss_pred eEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHH----HH---H-hh--CCCceEEEEeecC
Q 018519 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE----EV---A-ST--GPGIRFFQLYVYK 133 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e----ei---~-~~--~~~~~~~QLy~~~ 133 (354)
+|++.+++.|+++|||++.+ +.++++.|+++|..+++++|.+.... +. . .. .+.+..+||+. .
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g-~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG-S 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC-C
Confidence 45677888999999999988 88999999999999998888543211 11 1 11 12567899975 7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCC--
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDR-- 210 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 210 (354)
|++.+.+.++++++.|++.|+||++||++ +. ...+.+...+.+. ..... +.++++....|
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~--~v--------~~~g~Gs~ll~~p-------~~~~eiv~av~~a~d~pv~ 137 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK--KV--------NRKLAGSALLQYP-------DLVKSILTEVVNAVDVPVT 137 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH--HH--------cCCCcccHHhcCH-------HHHHHHHHHHHHhcCCceE
Confidence 99999999999888999999999999973 10 0122223222221 11222 22233332223
Q ss_pred ---cccccc--cCCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH
Q 018519 211 ---SLSWKG--VLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 283 (354)
Q Consensus 211 ---~~~w~G--i~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal 283 (354)
+.+|+. ....+.++.+.++|+|+|+| ||++ +.+.|++.|+.+.++++.+ ++|||++|||+|++|+.+++
T Consensus 138 vKiR~G~~~~~~~~~~~a~~le~~G~d~i~v--h~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l 213 (321)
T PRK10415 138 LKIRTGWAPEHRNCVEIAQLAEDCGIQALTI--HGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVL 213 (321)
T ss_pred EEEEccccCCcchHHHHHHHHHHhCCCEEEE--ecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH
Confidence 235542 12457778899999999999 5554 4566788899999999987 79999999999999999999
Q ss_pred H-cCcCEEEEcH-----HHHHHHhh----cC----HHHHHHHHHHHHHHHHHHHHHhCCC-Chhhhccccee
Q 018519 284 A-LGASGIFIGR-----PVVYSLAA----EG----EKGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIV 340 (354)
Q Consensus 284 a-lGAd~V~igr-----~~l~~~~~----~G----~~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~~l~ 340 (354)
. .|||+||+|| ||+|.... .| +...++.++.+.++++.+....|.. .+.+++++.-+
T Consensus 214 ~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~ 285 (321)
T PRK10415 214 DYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSW 285 (321)
T ss_pred hccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 8 7999999998 66664421 12 2245678889999999888888764 56777776544
No 28
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.89 E-value=1.4e-21 Score=184.93 Aligned_cols=255 Identities=19% Similarity=0.210 Sum_probs=176.4
Q ss_pred hhcccceeecccc--CCCCCCccceeEc-----CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCC
Q 018519 41 NAFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (354)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~st~l~-----g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (354)
..|+++.|+|+.. .+.+++||+.+|. ...+..||+-|+|...+ +..+|.+.+++|...+++-+ .+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~------~~~mA~~la~~g~~~~iHk~--~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVG------TFEMAKALASFDILTAVHKH--YS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccc------cHHHHHHHHHCCCeEEEecC--CC
Confidence 4799999999744 3457899987774 34467999999997655 78999999999999999753 56
Q ss_pred HHHHHh----hCC---CceEEEEeecCChHHHHHHHHHHHH--cCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccc
Q 018519 114 VEEVAS----TGP---GIRFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (354)
Q Consensus 114 ~eei~~----~~~---~~~~~QLy~~~d~~~~~~~~~~a~~--~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~ 184 (354)
+|+..+ ..+ ....+ -....++. .+.++...+ +|+++|+|++ .+ +.+ . .
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~d-~er~~~L~~~~~g~D~iviD~--Ah----------Ghs------~-~- 137 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSDAD-FEKTKQILALSPALNFICIDV--AN----------GYS------E-H- 137 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCHHH-HHHHHHHHhcCCCCCEEEEEC--CC----------CcH------H-H-
Confidence 776443 221 11222 22223333 344444444 5888877753 33 111 0 0
Q ss_pred cCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcC----C--CCCCcChHHHHHHHH
Q 018519 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVV 258 (354)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~--~~~~~~~~~~l~~i~ 258 (354)
-...++.+.+...+..+.-.+|.++|.++.++++|||+|.|.-..|. + .-.|.|.+.++.+++
T Consensus 138 -----------~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 138 -----------FVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred -----------HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 01113333332222233333588999999999999999998544442 2 124778899999988
Q ss_pred HHhcC-CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH--------------------HHHhh---------------
Q 018519 259 KATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA--------------- 302 (354)
Q Consensus 259 ~~~~~-~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l--------------------~~~~~--------------- 302 (354)
++.+. .+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 207 ~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~ 286 (346)
T PRK05096 207 DAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYR 286 (346)
T ss_pred HHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccc
Confidence 87643 7999999999999999999999999999999772 12211
Q ss_pred --cCH-------HHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 303 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 303 --~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.|. ..+.+++..+...|+..|.++|..+|+||++.
T Consensus 287 ~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 287 AAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred cccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 010 12788999999999999999999999999643
No 29
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.87 E-value=2.2e-20 Score=178.55 Aligned_cols=237 Identities=19% Similarity=0.225 Sum_probs=158.2
Q ss_pred cceeEcCeeeccceEeccc-ccccccCChhhHHHHHHHHHcCCcEEecC---------------------C------CCC
Q 018519 61 MNTTVLGFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSS---------------------W------STS 112 (354)
Q Consensus 61 ~st~l~g~~l~~Pi~iAPm-~~~~l~~~~~e~~la~aa~~~G~~~~~s~---------------------~------~~~ 112 (354)
++|+++|.+++.||++||. .+.+ +..+. .+.+.|..+++.. + .+.
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~~------~~~~~-~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~ 73 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGSG------VESLR-RIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP 73 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCCC------HHHHH-HHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc
Confidence 4789999999999999995 3322 33344 4555588777651 1 011
Q ss_pred CHHH----HHhh---CCCceEEEEeecCChHHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhccCCCCcCcccc
Q 018519 113 SVEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (354)
Q Consensus 113 ~~ee----i~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G--~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~ 183 (354)
..+. +... .+.|.++||+. .+.+.+.+.++.+++++ +++|+||++||... +.+...
T Consensus 74 g~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------------~~g~~l 138 (300)
T TIGR01037 74 GVEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------------GGGIAI 138 (300)
T ss_pred CHHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------------CCcccc
Confidence 2222 2211 12478999975 68888888999988863 99999999999741 111111
Q ss_pred ccCCccCcCcccchhhH-HHHHhhhcCCcccccc--c-CCHHHHHHHHHhCCCEEEEecC-CcCCC--------------
Q 018519 184 FQGLDLGKMDEANDSGL-AAYVAGQIDRSLSWKG--V-LTAEDARIAVQAGAAGIIVSNH-GARQL-------------- 244 (354)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~G--i-~~~~~a~~~~~~G~d~I~vs~~-gg~~~-------------- 244 (354)
..+. ....++ .++.+....|....-. . ...+.++.+.++|+|+|+|+|+ .++..
T Consensus 139 ~~~~-------~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~g 211 (300)
T TIGR01037 139 GQDP-------ELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTG 211 (300)
T ss_pred ccCH-------HHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCc
Confidence 1110 011122 2222222223222211 1 1356678899999999999875 22111
Q ss_pred -CCCcC----hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 245 -DYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 245 -~~~~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
..+++ .++.+.++++.+ ++|||++|||++++|+.++|.+|||+||+||++++ ++ .+++.++++|
T Consensus 212 g~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----~p-----~~~~~i~~~l 280 (300)
T TIGR01037 212 GLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----RG-----FAFKKIIEGL 280 (300)
T ss_pred cccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----Cc-----hHHHHHHHHH
Confidence 11222 236677777776 79999999999999999999999999999999886 22 4789999999
Q ss_pred HHHHHHhCCCChhhhccc
Q 018519 320 ELAMALSGCRSLKEITRD 337 (354)
Q Consensus 320 ~~~m~~~G~~~i~~l~~~ 337 (354)
+.+|+..|+++++|+.+.
T Consensus 281 ~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 281 IAFLKAEGFTSIEELIGI 298 (300)
T ss_pred HHHHHHcCCCCHHHHhCc
Confidence 999999999999999763
No 30
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.87 E-value=1.3e-20 Score=180.55 Aligned_cols=239 Identities=17% Similarity=0.148 Sum_probs=161.4
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcC-CcEEecCCCCC--------CHHHHHh------hCC--CceEEEEeecCC
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TGP--GIRFFQLYVYKD 134 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G-~~~~~s~~~~~--------~~eei~~------~~~--~~~~~QLy~~~d 134 (354)
+|+++|||++.+ +.++++.|+++| ..+++++|.+. ....+.. ..+ .|..+||+. .|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLG-QY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEecc-CC
Confidence 589999999988 889999999999 78899988432 1111111 112 689999985 79
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhc--CC-
Q 018519 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQI--DR- 210 (354)
Q Consensus 135 ~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~- 210 (354)
++.+.+.++++++.|++.|+||++||++ +.. ..+.+...+.+. ..... ++++.+.+. .|
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~--~v~--------~~g~Gs~Ll~~~-------~~~~eiv~avr~~~~~~~pV 136 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK--TVN--------GSGGGATLLKDP-------ELIYQGAKAMREAVPAHLPV 136 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch--HHh--------cCCCchHhhcCH-------HHHHHHHHHHHHhcCCCcce
Confidence 9999999999999999999999999973 111 112122222111 11122 222233221 22
Q ss_pred ----ccccccc-CCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcC-hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHH
Q 018519 211 ----SLSWKGV-LTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 282 (354)
Q Consensus 211 ----~~~w~Gi-~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ka 282 (354)
+++|+.. ...+.++.+.++|+|.|+| ||++ |.+.+++ .|+.+.++++.+ ++|||++|||.|++|+.++
T Consensus 137 svKiR~g~~~~~~~~~~a~~l~~~Gvd~i~V--h~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~ 212 (312)
T PRK10550 137 TVKVRLGWDSGERKFEIADAVQQAGATELVV--HGRTKEDGYRAEHINWQAIGEIRQRL--TIPVIANGEIWDWQSAQQC 212 (312)
T ss_pred EEEEECCCCCchHHHHHHHHHHhcCCCEEEE--CCCCCccCCCCCcccHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHH
Confidence 2455421 2467788899999999999 5554 4556665 799999999987 7999999999999999999
Q ss_pred HH-cCcCEEEEcH-----HHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHhCC-CChhhhcccc
Q 018519 283 LA-LGASGIFIGR-----PVVYSLAAEGE--KGVRRVLEMLREEFELAMALSGC-RSLKEITRDH 338 (354)
Q Consensus 283 la-lGAd~V~igr-----~~l~~~~~~G~--~gv~~~l~~l~~el~~~m~~~G~-~~i~~l~~~~ 338 (354)
+. .|||+||||| ||+|.....|. ...++.++.+.++++......+. ..+.++++..
T Consensus 213 l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~ 277 (312)
T PRK10550 213 MAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWL 277 (312)
T ss_pred HhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 97 7899999999 77776544332 23445666666666433322221 2355555543
No 31
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.87 E-value=1.5e-20 Score=180.49 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=160.1
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCC-cEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChHHHHHHHH
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (354)
|+++|||.+.+ |.++++.|+++|. .+++++|.+. ...++....+ .|..+||+. .|++.+.+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG-SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc-CCHHHHHHHHH
Confidence 79999999988 8899999999998 7888888431 1122222223 689999985 79999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCC-----ccccccc
Q 018519 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDR-----SLSWKGV 217 (354)
Q Consensus 144 ~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~w~Gi 217 (354)
.+++.|++.|+||++||+.-. ...+.+...+.+. ....+ +.+..+....| +++|+..
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v----------~~~g~Gs~Ll~~p-------~~~~~iv~av~~~~~~PVsvKiR~g~~~~ 137 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRV----------QNGNFGACLMGNA-------DLVADCVKAMQEAVNIPVTVKHRIGIDPL 137 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHh----------CCCCeehHhhcCH-------HHHHHHHHHHHHHhCCCeEEEEecCCCCc
Confidence 999999999999999997410 0122233322221 11222 22233333233 2355421
Q ss_pred ----CCHHHHHHHHHhCCCEEEEecCCcC---CCCC-------CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH
Q 018519 218 ----LTAEDARIAVQAGAAGIIVSNHGAR---QLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 283 (354)
Q Consensus 218 ----~~~~~a~~~~~~G~d~I~vs~~gg~---~~~~-------~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal 283 (354)
...+.++.+.++|+|+|+| ||++ |... .+..|+.+.++++.+. ++|||++|||+|.+|+.+++
T Consensus 138 ~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 138 DSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred chHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHH
Confidence 1234578889999999999 7765 2222 2236788888887663 69999999999999999999
Q ss_pred HcCcCEEEEcH-----HHHHHHhh----cC---HHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 284 ALGASGIFIGR-----PVVYSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 284 alGAd~V~igr-----~~l~~~~~----~G---~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
. |||+||||| ||+|.... +| .....+.++.+.++++..... ...+.+++++..+
T Consensus 215 ~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~~~~ 280 (318)
T TIGR00742 215 S-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRHLLG 280 (318)
T ss_pred h-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHH
Confidence 6 999999999 67775432 12 123445667777777765433 2456667666444
No 32
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.86 E-value=3.1e-20 Score=179.04 Aligned_cols=246 Identities=19% Similarity=0.225 Sum_probs=168.0
Q ss_pred cCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCC-CH-------HHHHhhCC--CceEEEEeecCCh
Q 018519 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-SV-------EEVASTGP--GIRFFQLYVYKDR 135 (354)
Q Consensus 66 ~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~-~~-------eei~~~~~--~~~~~QLy~~~d~ 135 (354)
++.++..|+++|||.+.+ +.++++.|+++|..++.++|.+. ++ .++....+ .|..+||.. .++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g-~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG-SDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeC-CCH
Confidence 567888999999999887 88999999999999888888431 11 11222222 678899975 799
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCCc---
Q 018519 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRS--- 211 (354)
Q Consensus 136 ~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--- 211 (354)
+.+.+.+++++++|+++|+||++||.. .|. .++.+...+.+. ....+ ++.+.+.+..|.
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~---------~~~~Gs~l~~~~-------~~~~ei~~~vr~~~~~pv~vK 137 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KIT---------KKGAGSALLRDP-------DLIGKIVKAVVDAVDIPVTVK 137 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-Hhc---------CCCccchHhCCH-------HHHHHHHHHHHhhcCCCEEEE
Confidence 999999999999999999999999952 111 111111111110 01112 222222222332
Q ss_pred --cccc--ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH-cC
Q 018519 212 --LSWK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LG 286 (354)
Q Consensus 212 --~~w~--Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala-lG 286 (354)
++|+ +....+.++.+.++|+|+|+|++.-..+...+++.++.+.++++.+ ++|||++|||++++|+.+++. .|
T Consensus 138 ir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~~~g 215 (319)
T TIGR00737 138 IRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLETTG 215 (319)
T ss_pred EEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHhhC
Confidence 3454 2234577888999999999994422223344677889999999887 799999999999999999995 79
Q ss_pred cCEEEEcHHHH-----HHHhh----cCH----HHHHHHHHHHHHHHHHHHHHhCCC-Chhhhccc
Q 018519 287 ASGIFIGRPVV-----YSLAA----EGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITRD 337 (354)
Q Consensus 287 Ad~V~igr~~l-----~~~~~----~G~----~gv~~~l~~l~~el~~~m~~~G~~-~i~~l~~~ 337 (354)
||+||+||+++ +.... .|. ....+.++.+.++++......|.. .+..+++.
T Consensus 216 ad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 280 (319)
T TIGR00737 216 CDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKH 280 (319)
T ss_pred CCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999554 43221 121 234567788888888888877743 45555544
No 33
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.85 E-value=5.7e-20 Score=185.99 Aligned_cols=122 Identities=29% Similarity=0.328 Sum_probs=104.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCc-----C-CCCCCcChHHHHHHHHHHh-------cCCccEEEcCCCCCHHHHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------QGRIPVFLDGGVRRGTDVFKA 282 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~~~i~vi~~GGi~~g~dv~ka 282 (354)
.|.++++|+.++++|||+|.|++||| | +.+.|+|.+.++.++++++ +.++|||+||||+++.|++||
T Consensus 291 nV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KA 370 (502)
T PRK07107 291 NVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLA 370 (502)
T ss_pred cccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHH
Confidence 38999999999999999999999999 5 6778899999999999876 225999999999999999999
Q ss_pred HHcCcCEEEEcHHHHH--------------------HHhh--------------------cCH-------HHHHHHHHHH
Q 018519 283 LALGASGIFIGRPVVY--------------------SLAA--------------------EGE-------KGVRRVLEML 315 (354)
Q Consensus 283 lalGAd~V~igr~~l~--------------------~~~~--------------------~G~-------~gv~~~l~~l 315 (354)
|++|||+||+||+|-- +++. .|. ..+.+++..+
T Consensus 371 la~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~ 450 (502)
T PRK07107 371 LAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAIT 450 (502)
T ss_pred HHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCccEEEecCCCCHHHHHHHH
Confidence 9999999999998831 1111 011 1278899999
Q ss_pred HHHHHHHHHHhCCCChhhhccc
Q 018519 316 REEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 316 ~~el~~~m~~~G~~~i~~l~~~ 337 (354)
...|+..|.++|+.+|.||+..
T Consensus 451 ~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 451 LSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred HHHHHHhhhccCCCcHHHHHhC
Confidence 9999999999999999999754
No 34
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.84 E-value=3.8e-19 Score=180.13 Aligned_cols=122 Identities=25% Similarity=0.407 Sum_probs=100.9
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcC------CCCCCcChHHHHHHHHHHhc-CCccEEEcCCCCCHHHHHHHHHcCc
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGA 287 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGi~~g~dv~kalalGA 287 (354)
.+|.++++++.+.++|||+|.|+.+.|. ..++|.|.+.++.++.+.+. .++|||++|||+++.|++||+++||
T Consensus 288 G~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA 367 (495)
T PTZ00314 288 GNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGA 367 (495)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999999654331 24578899999888887764 3699999999999999999999999
Q ss_pred CEEEEcHHHHH--------------------HHhh------c-----------------CH-------HHHHHHHHHHHH
Q 018519 288 SGIFIGRPVVY--------------------SLAA------E-----------------GE-------KGVRRVLEMLRE 317 (354)
Q Consensus 288 d~V~igr~~l~--------------------~~~~------~-----------------G~-------~gv~~~l~~l~~ 317 (354)
|+||+|+.|.- +++. . |. ..+.+++..+..
T Consensus 368 ~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~ 447 (495)
T PTZ00314 368 DCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVK 447 (495)
T ss_pred CEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHH
Confidence 99999998742 1111 0 10 237899999999
Q ss_pred HHHHHHHHhCCCChhhhcc
Q 018519 318 EFELAMALSGCRSLKEITR 336 (354)
Q Consensus 318 el~~~m~~~G~~~i~~l~~ 336 (354)
+|+..|.++|+.+|.||+.
T Consensus 448 gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 448 GVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred HHHHHHHhhCCCcHHHHHh
Confidence 9999999999999999986
No 35
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.84 E-value=9e-19 Score=169.17 Aligned_cols=239 Identities=20% Similarity=0.212 Sum_probs=158.7
Q ss_pred ccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCC----------------------------
Q 018519 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~---------------------------- 110 (354)
|++|+++|+++++||++|.-+... +....+.+...|..+++. +..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 679999999999999997433322 223444466666555442 110
Q ss_pred ------CCCHH----HHHhh---CCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC
Q 018519 111 ------TSSVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (354)
Q Consensus 111 ------~~~~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~ 177 (354)
+..++ ++.+. ...|.++|+.. .+.+...+.++.++++|+++|+||+.||.. + |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~----------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPT--D----------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--C----------C-
Confidence 11122 23221 12578899864 577888899999999999999999998531 0 1
Q ss_pred cCccccccCCccCcCcccchhh-HHHHHhhhcCCcccccc--c-CCHHHHHHHHHhCCCEEEEecCCc-CCCC-------
Q 018519 178 FLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLSWKG--V-LTAEDARIAVQAGAAGIIVSNHGA-RQLD------- 245 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~G--i-~~~~~a~~~~~~G~d~I~vs~~gg-~~~~------- 245 (354)
+. .+... .....+ +.++.+....|.+.+-. + ...+.++.+.++|+|+|+++|+.. ...+
T Consensus 141 ~~-----~g~~~----~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~ 211 (325)
T cd04739 141 DI-----SGAEV----EQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVV 211 (325)
T ss_pred Cc-----ccchH----HHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCcccccccee
Confidence 00 00000 001112 23333333344443322 1 236778889999999999999742 1111
Q ss_pred --C---Cc----ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHH
Q 018519 246 --Y---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 316 (354)
Q Consensus 246 --~---~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~ 316 (354)
+ |+ -.+..+.++++.+ ++|||++|||+|++|++|+|.+|||+|++||++++ .|+. ++..+.
T Consensus 212 ~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp~----~~~~i~ 281 (325)
T cd04739 212 PNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGPD----YIGTLL 281 (325)
T ss_pred cCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCch----HHHHHH
Confidence 1 11 1244556666555 79999999999999999999999999999999887 3543 788999
Q ss_pred HHHHHHHHHhCCCChhhhccc
Q 018519 317 EEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 317 ~el~~~m~~~G~~~i~~l~~~ 337 (354)
+||+.+|...|+++++|+++.
T Consensus 282 ~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 282 AGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHHHHHcCCCCHHHHhcc
Confidence 999999999999999999884
No 36
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.83 E-value=2.5e-18 Score=164.43 Aligned_cols=239 Identities=20% Similarity=0.177 Sum_probs=162.0
Q ss_pred ccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEe-cCCCC--------------------------C
Q 018519 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST--------------------------S 112 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~-s~~~~--------------------------~ 112 (354)
|++|+++|++++.||++|+-.... +..+.+.+.+.|..+++ .+... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~~------~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFGF------GGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCCC------CHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 689999999999999998632221 33677777788876665 22210 1
Q ss_pred CHH----HHHhh---CCCceEEEEeecCChHHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhccCCCCcCccccc
Q 018519 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (354)
Q Consensus 113 ~~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~ 184 (354)
.++ ++.+. ...+.++||.. .+.+...+.+++++++| +++|+||+.||... .+ +....
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------------~g-g~~~~ 139 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------------HG-GMAFG 139 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------------CC-ccccc
Confidence 122 22221 12578999964 68888899999999998 99999999999731 00 00000
Q ss_pred cCCccCcCcccchhhH-HHHHhhhcCCcccccc--c-CCHHHHHHHHHhCCCEEEEecC--CcC-CC-------------
Q 018519 185 QGLDLGKMDEANDSGL-AAYVAGQIDRSLSWKG--V-LTAEDARIAVQAGAAGIIVSNH--GAR-QL------------- 244 (354)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~G--i-~~~~~a~~~~~~G~d~I~vs~~--gg~-~~------------- 244 (354)
.+. ....++ +++.+....|.+..-. + ...+.++.+.++|+|+|+++|. |.+ ..
T Consensus 140 ~~~-------~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg 212 (301)
T PRK07259 140 TDP-------ELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGG 212 (301)
T ss_pred cCH-------HHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCc
Confidence 000 011122 2222222223222112 1 1245678899999999999873 211 00
Q ss_pred CCC----cChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 245 DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 245 ~~~----~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
..+ +..++.+.++++.+ ++|||++|||++++|+.++++.|||+|++||++++ ++ .+++.++++++
T Consensus 213 ~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~ 281 (301)
T PRK07259 213 LSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLE 281 (301)
T ss_pred cCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHH
Confidence 111 22467788888877 79999999999999999999999999999999886 32 47889999999
Q ss_pred HHHHHhCCCChhhhccc
Q 018519 321 LAMALSGCRSLKEITRD 337 (354)
Q Consensus 321 ~~m~~~G~~~i~~l~~~ 337 (354)
.+|...|+++++|+.+.
T Consensus 282 ~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 282 AYLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHHHcCCCCHHHHhCc
Confidence 99999999999998763
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=1.7e-18 Score=168.03 Aligned_cols=240 Identities=18% Similarity=0.141 Sum_probs=158.4
Q ss_pred ccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecC-CC----------------------------
Q 018519 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS---------------------------- 110 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~-~~---------------------------- 110 (354)
|++++++|++|++||++|.-.... .....+.+.+.|...++.- ..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999887644322 2222333666665544421 10
Q ss_pred -------CCCHHHHH-------hhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCC
Q 018519 111 -------TSSVEEVA-------STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (354)
Q Consensus 111 -------~~~~eei~-------~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p 176 (354)
+..+++.. +....|.+.|+.. .+.+...+.+++++++|+++|.+|+.||... . +.
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~-~------~~--- 144 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD-P------DI--- 144 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-C------CC---
Confidence 11122211 1122578999965 5677778899999999999999999996420 0 00
Q ss_pred CcCccccccCCccCcCcccchhh-HHHHHhhhcCCccccc--cc-CCHHHHHHHHHhCCCEEEEecCCc-CCC-------
Q 018519 177 PFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLSWK--GV-LTAEDARIAVQAGAAGIIVSNHGA-RQL------- 244 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~--Gi-~~~~~a~~~~~~G~d~I~vs~~gg-~~~------- 244 (354)
.+... .....+ ++++.+....|.+... ++ ...+.++.+.++|+|+|+++|+.. ...
T Consensus 145 ~g~~~------------~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~ 212 (334)
T PRK07565 145 SGAEV------------EQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEV 212 (334)
T ss_pred ccccH------------HHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhccc
Confidence 00000 001111 2333333334544432 22 235777889999999999988732 111
Q ss_pred --CCCcC-------hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHH
Q 018519 245 --DYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 315 (354)
Q Consensus 245 --~~~~~-------~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l 315 (354)
.++.+ .++.+.++++.+ ++|||++|||+|++|+.|+|.+|||+|++||++++ .|. .+++.+
T Consensus 213 ~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i 282 (334)
T PRK07565 213 VPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTI 282 (334)
T ss_pred ccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHH
Confidence 12222 234455555555 79999999999999999999999999999999987 343 478899
Q ss_pred HHHHHHHHHHhCCCChhhhcccc
Q 018519 316 REEFELAMALSGCRSLKEITRDH 338 (354)
Q Consensus 316 ~~el~~~m~~~G~~~i~~l~~~~ 338 (354)
.+||+.+|...|+++++|+++..
T Consensus 283 ~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 283 LRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred HHHHHHHHHHcCCCCHHHHhccc
Confidence 99999999999999999998754
No 38
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.83 E-value=4.3e-19 Score=171.99 Aligned_cols=246 Identities=25% Similarity=0.303 Sum_probs=144.7
Q ss_pred eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHH
Q 018519 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (354)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (354)
.++..||+++.|+++.+ +++...++|++++..|+.+..++. ..+.++.... ....++|+ .........+.++
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEG-g~~~~~~~~~-~~~~I~Q~-~sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEG-GELPEERKAA-KDLRIKQI-ASGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCC-CCCHHHhccc-CCceEEEc-CCCCCCCCHHHhc----
Confidence 45789999999999875 566788999999999999888875 3455544322 22238895 4455666655553
Q ss_pred cCCCEEEEecCCCCCC--------chh----HHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhh---c-CCc
Q 018519 148 AGFKAIALTVDTPRLG--------RRE----ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ---I-DRS 211 (354)
Q Consensus 148 ~G~~ai~i~vd~p~~g--------~r~----~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 211 (354)
.+++|.|.++.-.+. .+. +.+|. ++++.+. +.... .++-....++.+++..+ . ..+
T Consensus 134 -~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~---~~~g~~~--iSP~~--h~di~s~edl~~~I~~Lr~~~~~~p 205 (368)
T PF01645_consen 134 -QADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRG---VPPGVDL--ISPPP--HHDIYSIEDLAQLIEELRELNPGKP 205 (368)
T ss_dssp -C-SEEEEE---TTSTTT--EE-GGG--HHHHHHHT---S-TT--E--E--SS---TT-SSHHHHHHHHHHHHHH-TTSE
T ss_pred -CCCeEEEEEecCccccCcceechhhchHHHHHHhC---CCCCCcc--ccCCC--CCCcCCHHHHHHHHHHHHhhCCCCc
Confidence 567888888653221 111 11111 1222111 00000 11112333444444332 2 334
Q ss_pred cccc-cc-CCHHHHH-HHHHhCCCEEEEecC-CcCC-------CCCCcChHHHHHHHHHHh-----cCCccEEEcCCCCC
Q 018519 212 LSWK-GV-LTAEDAR-IAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRR 275 (354)
Q Consensus 212 ~~w~-Gi-~~~~~a~-~~~~~G~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGi~~ 275 (354)
++.| +. ...++.. .+.++|+|+|+|+|+ ||+. .+.|.|+...|.++.+.+ ++++.++++||+++
T Consensus 206 VgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t 285 (368)
T PF01645_consen 206 VGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRT 285 (368)
T ss_dssp EEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--S
T ss_pred EEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccC
Confidence 5555 11 2344444 489999999999998 4542 246889999999998876 45899999999999
Q ss_pred HHHHHHHHHcCcCEEEEcHHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHh
Q 018519 276 GTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALS 326 (354)
Q Consensus 276 g~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~ 326 (354)
+.|++||++||||+|.+||++|++++|. +.+.|.+|+..+.+|++..|..+
T Consensus 286 ~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~ 365 (368)
T PF01645_consen 286 GDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAAL 365 (368)
T ss_dssp HHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998752 35679999999999999999999
Q ss_pred CCC
Q 018519 327 GCR 329 (354)
Q Consensus 327 G~~ 329 (354)
|.+
T Consensus 366 G~~ 368 (368)
T PF01645_consen 366 GKR 368 (368)
T ss_dssp T-S
T ss_pred CCC
Confidence 964
No 39
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.83 E-value=3.9e-20 Score=177.45 Aligned_cols=241 Identities=22% Similarity=0.273 Sum_probs=150.6
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCc-EEecCCCCC-----CHH---HHHhhCC--CceEEEEeecCChHHHHHHHH
Q 018519 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----SVE---EVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (354)
Q Consensus 75 ~iAPm~~~~l~~~~~e~~la~aa~~~G~~-~~~s~~~~~-----~~e---ei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 143 (354)
++|||.+.+ +.++++.++++|.. .++++|.+. ..+ +.....+ .|..+||.. +|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g-~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFG-NDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEee-ccHHHHHHHHH
Confidence 589999888 88999999999999 899988431 111 1111223 589999975 89999999999
Q ss_pred HHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCC-----ccccc--
Q 018519 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDR-----SLSWK-- 215 (354)
Q Consensus 144 ~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~w~-- 215 (354)
.+.+.|++.|+||++||++ +. ...+.+...+.+. ..... +.+..+....| +++|+
T Consensus 74 ~~~~~~~~~IDlN~GCP~~--~v--------~~~g~Ga~Ll~~p-------~~~~~iv~~~~~~~~~pvsvKiR~g~~~~ 136 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP--KV--------TKGGAGAALLKDP-------DLLAEIVKAVRKAVPIPVSVKIRLGWDDS 136 (309)
T ss_dssp HHCCTT-SEEEEEE---SH--HH--------HHCT-GGGGGC-H-------HHHHHHHHHHHHH-SSEEEEEEESECT--
T ss_pred hhhccCCcEEeccCCCCHH--HH--------hcCCcChhhhcCh-------HHhhHHHHhhhcccccceEEecccccccc
Confidence 9888999999999999984 11 1223344444321 12222 23333333323 35665
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH-cCcCEEEEcH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGR 294 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala-lGAd~V~igr 294 (354)
...+.+.++.+.++|+++|+|++.-..|.+.+++.|+.+.++++.+ ++|||++|||.|.+|+.+.+. .|+|+||+||
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHHHHHCCCH-SSEEEESH
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHHHHHHHhcCCcEEEEch
Confidence 2236788899999999999993333346777899999999999988 699999999999999999998 5999999999
Q ss_pred -----HHHHHH---hhcC---H-HHHHHHHHHHHHHHHHHHHHhC-CCChhhhcccceee
Q 018519 295 -----PVVYSL---AAEG---E-KGVRRVLEMLREEFELAMALSG-CRSLKEITRDHIVT 341 (354)
Q Consensus 295 -----~~l~~~---~~~G---~-~gv~~~l~~l~~el~~~m~~~G-~~~i~~l~~~~l~~ 341 (354)
||+|.. ...| + ..+.+.++.+.++++.+....| ...+..++++..+.
T Consensus 215 gal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 215 GALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp HHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred hhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 778862 1111 1 1156678888888888888776 34677777665544
No 40
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.82 E-value=6.6e-18 Score=161.13 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=156.8
Q ss_pred ceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCC-CCC--------------------------CH
Q 018519 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-STS--------------------------SV 114 (354)
Q Consensus 62 st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~-~~~--------------------------~~ 114 (354)
+|+++|.+++.||++|.= ..+ ....+++.+...|..+++... +.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aag-~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASG-TFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCC-CCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 578999999999999841 111 123555555554466665432 110 11
Q ss_pred H----HHHhh---CCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCC
Q 018519 115 E----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (354)
Q Consensus 115 e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~ 187 (354)
+ ++.+. ...+..+||.. .+.+...+.+++++++|+++|+||+.||....+ +.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------g~~~~~~~ 139 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------GMAFGTDP 139 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------cccccCCH
Confidence 2 22221 12578999975 678888899999999999999999999974211 00000000
Q ss_pred ccCcCcccchhhH-HHHHhhhcCCcccccc--c-CCHHHHHHHHHhCCCEEEEecC-CcCCC---------------CCC
Q 018519 188 DLGKMDEANDSGL-AAYVAGQIDRSLSWKG--V-LTAEDARIAVQAGAAGIIVSNH-GARQL---------------DYV 247 (354)
Q Consensus 188 ~~~~~~~~~~~~~-~~~~~~~~~~~~~w~G--i-~~~~~a~~~~~~G~d~I~vs~~-gg~~~---------------~~~ 247 (354)
....++ .++.+....|.+..-+ . ...+.++.+.++|+|+|+++|+ .|+.. ..+
T Consensus 140 -------~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg 212 (296)
T cd04740 140 -------EAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG 212 (296)
T ss_pred -------HHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC
Confidence 011122 2222222223222111 1 1346688899999999999875 22110 112
Q ss_pred cC----hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018519 248 PA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 323 (354)
Q Consensus 248 ~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m 323 (354)
++ .++.+.++++.+ ++|||++|||++++|+.++|++|||+|++||++++ ++ .+++.++++|.++|
T Consensus 213 ~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~ 281 (296)
T cd04740 213 PAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYL 281 (296)
T ss_pred cccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHH
Confidence 22 356778888777 79999999999999999999999999999999886 32 37889999999999
Q ss_pred HHhCCCChhhhcc
Q 018519 324 ALSGCRSLKEITR 336 (354)
Q Consensus 324 ~~~G~~~i~~l~~ 336 (354)
+..|+++++|+++
T Consensus 282 ~~~g~~~~~~~~g 294 (296)
T cd04740 282 DEEGIKSIEELVG 294 (296)
T ss_pred HHcCCCCHHHHhC
Confidence 9999999999975
No 41
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.82 E-value=9.7e-19 Score=175.83 Aligned_cols=136 Identities=29% Similarity=0.378 Sum_probs=106.7
Q ss_pred HHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcC-----C-CCCCcChHHHHHHHHHHhc-CCccEEEcCC
Q 018519 200 LAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GRIPVFLDGG 272 (354)
Q Consensus 200 ~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~i~vi~~GG 272 (354)
++.+.+...+.++...++.+.++|+.+.++|+|+|.|+.|.|. . ..+|.|++.++.++++++. .++|||+|||
T Consensus 256 i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGG 335 (450)
T TIGR01302 256 IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGG 335 (450)
T ss_pred HHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCC
Confidence 3334333233445566789999999999999999999866552 1 2468899999999887763 3799999999
Q ss_pred CCCHHHHHHHHHcCcCEEEEcHHHHH--------------------HHhh------------------------cCH---
Q 018519 273 VRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------EGE--- 305 (354)
Q Consensus 273 i~~g~dv~kalalGAd~V~igr~~l~--------------------~~~~------------------------~G~--- 305 (354)
|+++.|++|||++||++||+|+.|.- +++. .|.
T Consensus 336 i~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~egv~~~ 415 (450)
T TIGR01302 336 IRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGVEGA 415 (450)
T ss_pred CCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCCceEEc
Confidence 99999999999999999999998731 1111 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 018519 306 ----KGVRRVLEMLREEFELAMALSGCRSLKEIT 335 (354)
Q Consensus 306 ----~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 335 (354)
..+.+++..+...|+..|.++|+.++.||+
T Consensus 416 ~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 416 VPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred ccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 137889999999999999999999999986
No 42
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.81 E-value=1.5e-18 Score=174.57 Aligned_cols=122 Identities=28% Similarity=0.342 Sum_probs=101.3
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC------CCCCcChHHHHHHHHHHhcC-CccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
.+.+.+.++.+.++|||+|.|+..+|+. ..+|.|+...+.++++++.. ++|||+||||+++.|++|||++||+
T Consensus 273 ~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~ 352 (475)
T TIGR01303 273 NVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGAS 352 (475)
T ss_pred ccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 3899999999999999999998887753 24588999888888765532 7999999999999999999999999
Q ss_pred EEEEcHHHH---------------------HHHhh-----------------------cCHHH-----------HHHHHH
Q 018519 289 GIFIGRPVV---------------------YSLAA-----------------------EGEKG-----------VRRVLE 313 (354)
Q Consensus 289 ~V~igr~~l---------------------~~~~~-----------------------~G~~g-----------v~~~l~ 313 (354)
+||+|+.|. ++++. +|.+| +.+++.
T Consensus 353 ~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~ 432 (475)
T TIGR01303 353 NVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLID 432 (475)
T ss_pred EEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccccCceecccccccCCCCCHHHHHH
Confidence 999999772 11110 23232 678999
Q ss_pred HHHHHHHHHHHHhCCCChhhhccc
Q 018519 314 MLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 314 ~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.+...|+..|.++|+++|.||+..
T Consensus 433 ~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 433 HIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred HHHHHHHHHhhhcCCCcHHHHHhC
Confidence 999999999999999999999765
No 43
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.80 E-value=5.5e-18 Score=162.02 Aligned_cols=215 Identities=21% Similarity=0.203 Sum_probs=138.0
Q ss_pred ccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCCC---------------------------
Q 018519 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------- 111 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------- 111 (354)
|++|+++|++|++||++|.=.... +....+.+...|..+++. +...
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~~------~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTT------SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCCC------CHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 679999999999999999832221 223444444446544431 1100
Q ss_pred ------CCHH----HHH---hhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC
Q 018519 112 ------SSVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (354)
Q Consensus 112 ------~~~e----ei~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~ 177 (354)
..++ ++. +..+ .+.+.|++...+.+.+.+.++++++.|+++|++|++||..-. ..
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~-----------~~ 143 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMP-----------ER 143 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-----------CC
Confidence 0022 121 1222 578899976448888889999999899999999999997410 01
Q ss_pred cCccccccCCccCcCcccchhhHHHHHhh-hcCCccccc--cc-CCHHHHHHHHHhCCCEEEEecCC-c-----------
Q 018519 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAG-QIDRSLSWK--GV-LTAEDARIAVQAGAAGIIVSNHG-A----------- 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~--Gi-~~~~~a~~~~~~G~d~I~vs~~g-g----------- 241 (354)
+.+.....+ .....++.+.+.+ ...|.+.+- +. ...+.++.+.++|+|+|+++|+. +
T Consensus 144 ~~G~~l~~~-------~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~ 216 (299)
T cd02940 144 GMGAAVGQD-------PELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPP 216 (299)
T ss_pred CCchhhccC-------HHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCc
Confidence 111111111 0112223222322 223333221 21 23478888999999999988752 1
Q ss_pred ---------CCCCCCcC----hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 242 ---------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 242 ---------~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.+..+|++ +++.+.++++.+++++|||++|||++++|++++|.+|||+||+||.+++
T Consensus 217 ~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 217 APGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 12223433 3788999999886689999999999999999999999999999998876
No 44
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.80 E-value=2.3e-18 Score=174.72 Aligned_cols=127 Identities=28% Similarity=0.419 Sum_probs=103.1
Q ss_pred cccccccCCHHHHHHHHHhCCCEEEEec-----CCcCCC-CCCcChHHHHHHHHHHhc-CCccEEEcCCCCCHHHHHHHH
Q 018519 211 SLSWKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKAL 283 (354)
Q Consensus 211 ~~~w~Gi~~~~~a~~~~~~G~d~I~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~i~vi~~GGi~~g~dv~kal 283 (354)
++.-.++.+.++|+.+.++|+|+|.|+. |++++. .++.|+++++.+++++++ .++|||+||||+++.|++|||
T Consensus 271 ~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl 350 (486)
T PRK05567 271 QIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL 350 (486)
T ss_pred CEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH
Confidence 3344578999999999999999999843 444444 468999999999988764 379999999999999999999
Q ss_pred HcCcCEEEEcHHHHH--------------------HHhh------------------------cCH-------HHHHHHH
Q 018519 284 ALGASGIFIGRPVVY--------------------SLAA------------------------EGE-------KGVRRVL 312 (354)
Q Consensus 284 alGAd~V~igr~~l~--------------------~~~~------------------------~G~-------~gv~~~l 312 (354)
++|||+||+|++|-- +++. .|. ..+.+++
T Consensus 351 a~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 430 (486)
T PRK05567 351 AAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEII 430 (486)
T ss_pred HhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCceEEeCCCCCCHHHHH
Confidence 999999999997731 1111 010 1378899
Q ss_pred HHHHHHHHHHHHHhCCCChhhhccc
Q 018519 313 EMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 313 ~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
..+...|+..|.++|+.+|.||+..
T Consensus 431 ~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 431 HQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 9999999999999999999999843
No 45
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.80 E-value=5.6e-18 Score=164.10 Aligned_cols=242 Identities=18% Similarity=0.148 Sum_probs=159.4
Q ss_pred eeccceEecccccccccCChhhHHHHHHHHHcCC-cEEecCCCCC------CHHHHHhhCC--CceEEEEeecCChHHHH
Q 018519 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVA 139 (354)
Q Consensus 69 ~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~QLy~~~d~~~~~ 139 (354)
....|+++|||.+.+ |.++++.|+++|. .+++++|.+. ...+.....+ .+..+||+. .|++.+.
T Consensus 8 ~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGG-SDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeC-CCHHHHH
Confidence 345799999999988 8899999999997 7888888421 1122222223 689999985 7999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCC-----ccc
Q 018519 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDR-----SLS 213 (354)
Q Consensus 140 ~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~ 213 (354)
+.+++++++|++.|+||++||..-.| ..+.+...+.+. ..... ++++.+....| +++
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~----------~~~~Gs~L~~~p-------~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQ----------NGRFGACLMAEP-------ELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHcc----------CCCeeeHHhcCH-------HHHHHHHHHHHHHcCCceEEEEEee
Confidence 99999999999999999999974111 111122212111 11112 22233222222 234
Q ss_pred ccccC----CHHHHHHHHHhCCCEEEEecCCcC---CCCC-------CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHH
Q 018519 214 WKGVL----TAEDARIAVQAGAAGIIVSNHGAR---QLDY-------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 214 w~Gi~----~~~~a~~~~~~G~d~I~vs~~gg~---~~~~-------~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv 279 (354)
|++-. ..+.++.+.++|+|+|+| |+++ +... .+..++.+.++++.+. ++|||++|||++.+|+
T Consensus 144 ~~~~~t~~~~~~~~~~l~~aG~d~i~v--h~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~iPVI~nGgI~s~eda 220 (333)
T PRK11815 144 IDDQDSYEFLCDFVDTVAEAGCDTFIV--HARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-HLTIEINGGIKTLEEA 220 (333)
T ss_pred eCCCcCHHHHHHHHHHHHHhCCCEEEE--cCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-CCeEEEECCcCCHHHH
Confidence 44322 245567888999999999 4432 2211 3356888888887642 6999999999999999
Q ss_pred HHHHHcCcCEEEEcHH-----HHHHHhh---cCH----HHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 280 FKALALGASGIFIGRP-----VVYSLAA---EGE----KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 280 ~kalalGAd~V~igr~-----~l~~~~~---~G~----~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
.++++ |||+|||||+ |++.... .|+ ....++++.+.++++..... |. .+..++++..+
T Consensus 221 ~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~rk~~~~ 290 (333)
T PRK11815 221 KEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNHITRHMLG 290 (333)
T ss_pred HHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHHHHHHHHH
Confidence 99997 7999999995 4554321 122 23456677777777776663 43 46666665433
No 46
>PLN02826 dihydroorotate dehydrogenase
Probab=99.80 E-value=2.7e-17 Score=162.43 Aligned_cols=272 Identities=22% Similarity=0.255 Sum_probs=165.5
Q ss_pred cchHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEe-cCC
Q 018519 31 EDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSW 109 (354)
Q Consensus 31 ~~~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~-s~~ 109 (354)
+-|..++--...++.. +.|+. ....+.+++++++|++++.||++|.= . .. +-.......+.|..++. ++.
T Consensus 46 dpE~aH~~~~~~l~~~-~~~~~-~~~~~~~L~~~~~Gl~f~NPvglAAG-~----dk--n~~~~~~l~~lGfG~vevgTV 116 (409)
T PLN02826 46 DPETAHSLAISAAARG-LVPRE-KRPDPSVLGVEVWGRTFSNPIGLAAG-F----DK--NAEAVEGLLGLGFGFVEIGSV 116 (409)
T ss_pred CHHHHHHHHHHHHHhh-ccccc-ccCCCCCcceEECCEECCCCCEECcc-c----CC--CHHHHHHHHhcCCCeEEeCCc
Confidence 5556666666666533 33422 12456789999999999999999962 1 12 22344444555654443 332
Q ss_pred CC----------------------------CCHH----HHHhhC-------------------------CCceEEEEeec
Q 018519 110 ST----------------------------SSVE----EVASTG-------------------------PGIRFFQLYVY 132 (354)
Q Consensus 110 ~~----------------------------~~~e----ei~~~~-------------------------~~~~~~QLy~~ 132 (354)
.. ..++ ++.+.. +.+.+++|..+
T Consensus 117 T~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~n 196 (409)
T PLN02826 117 TPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKN 196 (409)
T ss_pred cCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHhhhcccccccccccccccccccccccCceEEEEeccC
Confidence 11 1112 222111 02567777443
Q ss_pred CCh-HHHHHHHHHHHHc--CCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhh---
Q 018519 133 KDR-NVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG--- 206 (354)
Q Consensus 133 ~d~-~~~~~~~~~a~~~--G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 206 (354)
++. +...+.++.++.. .+++++||+.||.. | + .+.+.... .-......+++..+.
T Consensus 197 k~~~~~~~Dy~~~~~~~~~~aDylelNiScPNt-------------p-g--lr~lq~~~---~l~~ll~~V~~~~~~~~~ 257 (409)
T PLN02826 197 KTSEDAAADYVQGVRALSQYADYLVINVSSPNT-------------P-G--LRKLQGRK---QLKDLLKKVLAARDEMQW 257 (409)
T ss_pred CCCcccHHHHHHHHHHHhhhCCEEEEECCCCCC-------------C-C--cccccChH---HHHHHHHHHHHHHHHhhh
Confidence 221 1234444444444 38999999999963 1 1 01010000 000001112211110
Q ss_pred ---hcCCcccccc-cCCHHH----HHHHHHhCCCEEEEecCC-cC----------CCCC---CcC----hHHHHHHHHHH
Q 018519 207 ---QIDRSLSWKG-VLTAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VPA----TIMALEEVVKA 260 (354)
Q Consensus 207 ---~~~~~~~w~G-i~~~~~----a~~~~~~G~d~I~vs~~g-g~----------~~~~---~~~----~~~~l~~i~~~ 260 (354)
...|.+.+-. .++.++ |+.+.++|+|+|+++|+- ++ +..+ |++ +++.+.++++.
T Consensus 258 ~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~ 337 (409)
T PLN02826 258 GEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL 337 (409)
T ss_pred ccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH
Confidence 1223333221 344444 788999999999999951 11 1122 332 56788888888
Q ss_pred hcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccc
Q 018519 261 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 338 (354)
Q Consensus 261 ~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~ 338 (354)
+++++|||++|||.|++|+++++.+||++|+++|.++| .|+. ++..+.+||.++|...|+++++|+.+..
T Consensus 338 ~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 338 TRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred hCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 87789999999999999999999999999999999988 4543 7889999999999999999999997643
No 47
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.79 E-value=2.2e-17 Score=164.95 Aligned_cols=190 Identities=17% Similarity=0.148 Sum_probs=133.0
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCC-CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~-g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (354)
.+.++||+...+.+...+.++.++++|+++|+||++||.. +.| +.+.....+ ......+.
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------~~g~~~~~~-------~~~~~~i~ 160 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------GMGSAVGQV-------PELVEMYT 160 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------------CCcccccCC-------HHHHHHHH
Confidence 5678999764378888899999999999999999999972 111 111111111 01122222
Q ss_pred HHHhh-hcCCccccc--cc-CCHHHHHHHHHhCCCEEEEecC-Cc--------------------CCCCCCcC----hHH
Q 018519 202 AYVAG-QIDRSLSWK--GV-LTAEDARIAVQAGAAGIIVSNH-GA--------------------RQLDYVPA----TIM 252 (354)
Q Consensus 202 ~~~~~-~~~~~~~w~--Gi-~~~~~a~~~~~~G~d~I~vs~~-gg--------------------~~~~~~~~----~~~ 252 (354)
+.+.+ ...|.+.+- .. ...+.|+.+.++|+|+|++.|+ .+ .+..+|++ .++
T Consensus 161 ~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~ 240 (420)
T PRK08318 161 RWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALN 240 (420)
T ss_pred HHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHH
Confidence 22222 233433222 22 2357778899999999997664 11 11223554 478
Q ss_pred HHHHHHHHhc-CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 018519 253 ALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 331 (354)
Q Consensus 253 ~l~~i~~~~~-~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i 331 (354)
.+.++++.++ .++|||++|||.|++|++++|.+|||+||+||.+++ .|.. ++..+.+||+.+|...|+.++
T Consensus 241 ~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si 312 (420)
T PRK08318 241 MVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASL 312 (420)
T ss_pred HHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCch----hHHHHHHHHHHHHHHcCcchH
Confidence 8888888764 379999999999999999999999999999998876 3443 788899999999999999999
Q ss_pred hhhcccce
Q 018519 332 KEITRDHI 339 (354)
Q Consensus 332 ~~l~~~~l 339 (354)
.++.+..+
T Consensus 313 ~e~iG~~~ 320 (420)
T PRK08318 313 EDMVGLAV 320 (420)
T ss_pred HHHhcccc
Confidence 99986533
No 48
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.78 E-value=8.5e-18 Score=170.50 Aligned_cols=121 Identities=22% Similarity=0.321 Sum_probs=96.9
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcC----CCCC--Cc---ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--VP---ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~--~~---~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal 285 (354)
.+|.+.++|+.|.++|||+|.|++|.|. +... +. +++..++++++.. ++|||++|||+++.|++|||++
T Consensus 295 g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~--~vpVIadGGI~~~~di~kAla~ 372 (505)
T PLN02274 295 GNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH--GVPVIADGGISNSGHIVKALTL 372 (505)
T ss_pred ecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHc
Confidence 4699999999999999999999988763 2221 22 3455566666654 7999999999999999999999
Q ss_pred CcCEEEEcHHHHH--------------------HHhh----------------------cCH-------HHHHHHHHHHH
Q 018519 286 GASGIFIGRPVVY--------------------SLAA----------------------EGE-------KGVRRVLEMLR 316 (354)
Q Consensus 286 GAd~V~igr~~l~--------------------~~~~----------------------~G~-------~gv~~~l~~l~ 316 (354)
||++||+|+.|.- +++. +|. ..+.+++..|.
T Consensus 373 GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~ 452 (505)
T PLN02274 373 GASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTM 452 (505)
T ss_pred CCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccCCceEEecccCCCHHHHHHHHH
Confidence 9999999998842 1111 111 12788999999
Q ss_pred HHHHHHHHHhCCCChhhhccc
Q 018519 317 EEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 317 ~el~~~m~~~G~~~i~~l~~~ 337 (354)
..|+..|.++|+.+|.||+..
T Consensus 453 ~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 453 QAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred HHHHHhhhhcCcchHHHHHhh
Confidence 999999999999999999865
No 49
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.78 E-value=4.3e-17 Score=159.64 Aligned_cols=252 Identities=17% Similarity=0.200 Sum_probs=164.5
Q ss_pred CCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCC-C------------------------
Q 018519 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-S------------------------ 110 (354)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~-~------------------------ 110 (354)
.+..|++|+++|++++.||++|.-.... .....+.+.++|...++.-. .
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~t~------~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPPGT------NYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccCCC------CHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 3567899999999999999998744322 33455555555766665210 0
Q ss_pred --C------C------CHH----HHH---hhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018519 111 --T------S------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (354)
Q Consensus 111 --~------~------~~e----ei~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~ 168 (354)
. . +++ ++. +..| .+.+..|....+.+...+.+++++++|+++|.+|+.||... -++
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r- 157 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PER- 157 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcC-
Confidence 0 0 122 222 2234 37788876546888999999999999999999999999731 000
Q ss_pred hhhccCCCCcCccccccCCccCcCcccchhhHHHHHhh-hcCCccccc--cc-CCHHHHHHHHHhCCCEEEEecCCc--C
Q 018519 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG-QIDRSLSWK--GV-LTAEDARIAVQAGAAGIIVSNHGA--R 242 (354)
Q Consensus 169 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~--Gi-~~~~~a~~~~~~G~d~I~vs~~gg--~ 242 (354)
+.+.....+ ......+.+.+.. ...|.+.+- .+ ...+.|+.+.++|+|+|++.|+-. .
T Consensus 158 ---------~~g~~~gq~-------~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~ 221 (385)
T PLN02495 158 ---------KMGAAVGQD-------CDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVM 221 (385)
T ss_pred ---------ccchhhccC-------HHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCccc
Confidence 000000000 0112223233333 234444432 22 234667789999999999999622 1
Q ss_pred CC----------------CCCcC-------hHHHHHHHHHHhc----CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 243 QL----------------DYVPA-------TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 243 ~~----------------~~~~~-------~~~~l~~i~~~~~----~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
.. .+|.+ .+..+.++++.++ .++|||+.|||.+++|+++.|.+||++|++++.
T Consensus 222 ~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta 301 (385)
T PLN02495 222 GINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTG 301 (385)
T ss_pred ccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeee
Confidence 11 11111 1223444555542 259999999999999999999999999999998
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 018519 296 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 339 (354)
Q Consensus 296 ~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 339 (354)
+++ .|.. +++.+.+||+.+|...|+++++|+++..+
T Consensus 302 ~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 302 VMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred eee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 876 4544 78889999999999999999999987644
No 50
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.76 E-value=7.1e-17 Score=159.84 Aligned_cols=256 Identities=20% Similarity=0.198 Sum_probs=173.7
Q ss_pred eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHH
Q 018519 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (354)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (354)
..+..||.++.|+++++ .++...++|+++.+.|+.+-.++.+ ...++. ......+.|+ .+.-.+.+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGG-e~~~~~--~~~~s~I~Qv-aSGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGG-EDPERY--EDGRSAIKQV-ASGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCC-CCHHHh--ccccceEEEe-ccccCccCHHHhC----
Confidence 56778999999999886 6677889999999999888877764 445444 2224578885 4455666655442
Q ss_pred cCCCEEEEecCCCCC--------CchhHHhhhc-cCCCCcCccccccCCccCcCcccchhhHHHHHhhhcC----Ccccc
Q 018519 148 AGFKAIALTVDTPRL--------GRREADIKNR-FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID----RSLSW 214 (354)
Q Consensus 148 ~G~~ai~i~vd~p~~--------g~r~~~~r~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~w 214 (354)
.+++|.|-+..-.+ |.+..+.-.. -..|++.+ .++... +.+--...++..++..+.. .++..
T Consensus 234 -~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~--~ISP~p--HHDiysieDLaqlI~dLk~~~~~~~I~V 308 (485)
T COG0069 234 -NADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVG--LISPPP--HHDIYSIEDLAQLIKDLKEANPWAKISV 308 (485)
T ss_pred -ccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCC--CcCCCC--cccccCHHHHHHHHHHHHhcCCCCeEEE
Confidence 45667777654221 1221111000 00122211 111111 1111234445555544321 12443
Q ss_pred c-c-cCCHHHHHH-HHHhCCCEEEEecC-CcCC-------CCCCcChHHHHHHHHHHh-----cCCccEEEcCCCCCHHH
Q 018519 215 K-G-VLTAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 215 ~-G-i~~~~~a~~-~~~~G~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGi~~g~d 278 (354)
| + ....++... +.+++||.|+|+|| |||. .+.|.|....|+++.+.+ ++++.|++|||++|+.|
T Consensus 309 Klva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~D 388 (485)
T COG0069 309 KLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGAD 388 (485)
T ss_pred EEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHH
Confidence 4 1 123344443 89999999999999 5652 245788878899888875 46899999999999999
Q ss_pred HHHHHHcCcCEEEEcHHHHHHHhhc-----------------------------CHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 279 VFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|+||++||||.|.+|++.|.+++|. .++.|.+++..+.+|++.+|..+|.+
T Consensus 389 Vaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~ 468 (485)
T COG0069 389 VAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKR 468 (485)
T ss_pred HHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999988651 35789999999999999999999999
Q ss_pred Chhhhccc
Q 018519 330 SLKEITRD 337 (354)
Q Consensus 330 ~i~~l~~~ 337 (354)
++++|.++
T Consensus 469 ~l~el~g~ 476 (485)
T COG0069 469 SLSELIGR 476 (485)
T ss_pred CHHHHhcc
Confidence 99999855
No 51
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.76 E-value=1.8e-16 Score=154.27 Aligned_cols=233 Identities=16% Similarity=0.173 Sum_probs=147.7
Q ss_pred CCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCCC-----------------------
Q 018519 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST----------------------- 111 (354)
Q Consensus 56 ~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~~----------------------- 111 (354)
..+++++|+++|.++.+||++|. +.. .+....+.+.+.|..+++. +...
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 46788999999999999998875 222 1334556678888776652 2211
Q ss_pred -----CCHH----HHHhh-CCCceEEEEeecC------ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCC
Q 018519 112 -----SSVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL 175 (354)
Q Consensus 112 -----~~~e----ei~~~-~~~~~~~QLy~~~------d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~ 175 (354)
..++ ++.+. ..-|.++++.... ..+...+.++++.+ ++++|++|+.||....
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g----------- 184 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG----------- 184 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-----------
Confidence 0112 22222 1245788885421 23344444444443 5999999999997410
Q ss_pred CCcCccccccCCccCcCcccchhhH-HHHHhhhc-----CCccccc--ccC---CHHHHHHHHHhCCCEEEEecCCc---
Q 018519 176 PPFLTLKNFQGLDLGKMDEANDSGL-AAYVAGQI-----DRSLSWK--GVL---TAEDARIAVQAGAAGIIVSNHGA--- 241 (354)
Q Consensus 176 p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~w~--Gi~---~~~~a~~~~~~G~d~I~vs~~gg--- 241 (354)
.+.... .....++ .++.+... .|.+.+- ++. ..+.|+.+.++|+|+|+++|.-.
T Consensus 185 -----~~~~~~-------~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~ 252 (344)
T PRK05286 185 -----LRDLQY-------GEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRD 252 (344)
T ss_pred -----cccccC-------HHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccc
Confidence 000000 0111222 22222222 3433222 222 35677888999999999988420
Q ss_pred ----------CCCCCCcC----hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHH
Q 018519 242 ----------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 307 (354)
Q Consensus 242 ----------~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~g 307 (354)
++..+|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+|++||++++ +|+.
T Consensus 253 ~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~----~gP~- 327 (344)
T PRK05286 253 GLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY----EGPG- 327 (344)
T ss_pred cccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH----hCch-
Confidence 11112333 4667888888876679999999999999999999999999999999987 2433
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 018519 308 VRRVLEMLREEFELAMALSG 327 (354)
Q Consensus 308 v~~~l~~l~~el~~~m~~~G 327 (354)
++..+++||+.+|...|
T Consensus 328 ---~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 328 ---LVKEIVRGLARLLRRDG 344 (344)
T ss_pred ---HHHHHHHHHHHHHHhcC
Confidence 67889999999998765
No 52
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.75 E-value=4.1e-16 Score=149.70 Aligned_cols=241 Identities=16% Similarity=0.156 Sum_probs=153.7
Q ss_pred ccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCC--------------------------CC
Q 018519 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TS 112 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~--------------------------~~ 112 (354)
|++|+++|.+|+.||++|.=.... +....+.+.+.|..+++. +.. +.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~~------~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYCM------TKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCCC------CHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 679999999999999998743321 234444577788766652 211 11
Q ss_pred CHH----HHHh---hCC-CceEEEEeecCChHHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhccCCCCcCcccc
Q 018519 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (354)
Q Consensus 113 ~~e----ei~~---~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G-~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~ 183 (354)
.++ ++.+ ..+ .|.+.++.. .+.+...+.+++++++| +++|++|+.||.... + ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G-~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~---~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVG-LSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K---PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEe-CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c---cc
Confidence 122 2222 112 567778754 57788888999998898 899999999996310 0 00
Q ss_pred ccCCccCcCcccchhhH-HHHHhhhcCCccccc--ccCCHHHHHHHH---HhCCCEEEEecCC--c--------C-CC--
Q 018519 184 FQGLDLGKMDEANDSGL-AAYVAGQIDRSLSWK--GVLTAEDARIAV---QAGAAGIIVSNHG--A--------R-QL-- 244 (354)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~--Gi~~~~~a~~~~---~~G~d~I~vs~~g--g--------~-~~-- 244 (354)
+.. .+ ....++ +.+.+....|.+.+- .+...+.++.+. +.|+++|+..|.- + + ..
T Consensus 138 ~g~----d~--~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~ 211 (310)
T PRK02506 138 IAY----DF--ETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKP 211 (310)
T ss_pred ccc----CH--HHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccC
Confidence 000 00 011122 222222233433322 222334444443 5567777666531 1 1 00
Q ss_pred ---CC---Cc----ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHH
Q 018519 245 ---DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEM 314 (354)
Q Consensus 245 ---~~---~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~ 314 (354)
.+ |+ -.+..+.++++.++.++|||+.|||.|++|++|.+.+||++|++++++++ .|. .++..
T Consensus 212 ~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~ 283 (310)
T PRK02506 212 KNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFER 283 (310)
T ss_pred CCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHH
Confidence 11 21 23455666777776679999999999999999999999999999999887 243 37889
Q ss_pred HHHHHHHHHHHhCCCChhhhccc
Q 018519 315 LREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 315 l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
+.+||+.+|...|+++++|+.+.
T Consensus 284 i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 284 LTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCh
Confidence 99999999999999999999863
No 53
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.73 E-value=1.6e-16 Score=146.45 Aligned_cols=192 Identities=12% Similarity=0.063 Sum_probs=126.5
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC----------------------CCHHHH----Hhh--CCCc
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------------------SSVEEV----AST--GPGI 124 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~----------------------~~~eei----~~~--~~~~ 124 (354)
|+++|||++.+ +.+|+++..++....+++.++. ..++-+ ... .+.+
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 89999999987 6789996555555556654431 012211 111 2357
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHH
Q 018519 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (354)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (354)
..+||+. .|++.+.+.++++++. ++.|+||++||+.- .. ..+.+...+.+. .....+.+.+
T Consensus 75 ~~vqi~g-~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------v~-~~g~G~~Ll~~p-------~~l~eiv~av 135 (233)
T cd02911 75 VGVNVRS-SSLEPLLNAAALVAKN-AAILEINAHCRQPE---------MV-EAGAGEALLKDP-------ERLSEFIKAL 135 (233)
T ss_pred EEEEecC-CCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------Hh-cCCcchHHcCCH-------HHHHHHHHHH
Confidence 8999985 7899999999988774 69999999999841 00 112222222211 1122222222
Q ss_pred hhhcCC-----cccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHH
Q 018519 205 AGQIDR-----SLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 205 ~~~~~~-----~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv 279 (354)
.+...| +.+|+ ..+.+.++.+.++|+|+|.+++ +.+ +....++.+.+++ + ++|||++|||.+++|+
T Consensus 136 r~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~--~~~--g~~ad~~~I~~i~--~--~ipVIgnGgI~s~eda 206 (233)
T cd02911 136 KETGVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVDA--MDP--GNHADLKKIRDIS--T--ELFIIGNNSVTTIESA 206 (233)
T ss_pred HhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECc--CCC--CCCCcHHHHHHhc--C--CCEEEEECCcCCHHHH
Confidence 222223 23443 3567888999999999886643 221 2356677777775 3 7999999999999999
Q ss_pred HHHHHcCcCEEEEcH---HHHH
Q 018519 280 FKALALGASGIFIGR---PVVY 298 (354)
Q Consensus 280 ~kalalGAd~V~igr---~~l~ 298 (354)
.+++..|||+||+|| ||+|
T Consensus 207 ~~~l~~GaD~VmiGR~~~p~~~ 228 (233)
T cd02911 207 KEMFSYGADMVSVARASLPENI 228 (233)
T ss_pred HHHHHcCCCEEEEcCCCCchHH
Confidence 999999999999999 5555
No 54
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.72 E-value=4.2e-16 Score=149.36 Aligned_cols=183 Identities=22% Similarity=0.232 Sum_probs=131.2
Q ss_pred eEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-------hhCCCceEEEEeecCChH
Q 018519 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDRN 136 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~~~~~~QLy~~~d~~ 136 (354)
+++| +.+||+.|||++.+ +..|+.+++++|...+++.. ..++|++. +....|+.+++.... +
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~- 74 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLS-P- 74 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCC-C-
Confidence 3455 45899999998754 45899999999999999853 33454432 223356777765422 2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccc
Q 018519 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKG 216 (354)
Q Consensus 137 ~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G 216 (354)
...+.++.+.+.|++.+.++.+.|. + -+.++.. .. ...|--
T Consensus 75 ~~~~~~~~~~~~~v~~v~~~~g~p~--------------------~----------------~i~~lk~-~g--~~v~~~ 115 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGAGNPG--------------------K----------------YIPRLKE-NG--VKVIPV 115 (307)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCcH--------------------H----------------HHHHHHH-cC--CEEEEE
Confidence 2345677778889998877554331 0 0111111 11 112223
Q ss_pred cCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+.+.++++++.++|+|+|+++|+ ||+. +..+++..++++++.+ ++|||++|||.++.|+.+++++|||+|++|+
T Consensus 116 v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 116 VASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred cCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 56899999999999999999886 4542 3346899999999887 7999999999999999999999999999999
Q ss_pred HHHHHH
Q 018519 295 PVVYSL 300 (354)
Q Consensus 295 ~~l~~~ 300 (354)
.|+...
T Consensus 192 ~f~~t~ 197 (307)
T TIGR03151 192 RFLCAK 197 (307)
T ss_pred HHhccc
Confidence 998754
No 55
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.72 E-value=2.8e-16 Score=152.24 Aligned_cols=186 Identities=24% Similarity=0.288 Sum_probs=115.2
Q ss_pred eEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHH-------HhhCCCceEEEEeecCChH
Q 018519 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~QLy~~~d~~ 136 (354)
+++| +..||+.+||++.+ ...|+.+++++|...+++.. ..+.+++ ++....|+.++++......
T Consensus 6 ~~lg--i~~PIiqapM~~is------~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLG--IKYPIIQAPMGGIS------TPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TTTS------SHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhC--CCcCEEcCCCCCCC------hHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 3456 45899999998854 44899999999999999853 4455443 2334467888887543332
Q ss_pred HHH----------HHHHHHHHcCC--------------CEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcC
Q 018519 137 VVA----------QLVRRAERAGF--------------KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (354)
Q Consensus 137 ~~~----------~~~~~a~~~G~--------------~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~ 192 (354)
... ..++...+.+. +.+..+.+.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~------------------------------ 126 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP------------------------------ 126 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H------------------------------
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH------------------------------
Confidence 222 11223333343 366666555420
Q ss_pred cccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecC--CcCCC-CCCcChHHHHHHHHHHhcCCccEEE
Q 018519 193 DEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIPVFL 269 (354)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi~ 269 (354)
.+.+.+.... ...|--+.++++|+++.++|+|+|++.|. |||.. +.+ +++..++++++.+ ++|||+
T Consensus 127 ------~~i~~l~~~g--i~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iPVia 195 (330)
T PF03060_consen 127 ------EVIERLHAAG--IKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIPVIA 195 (330)
T ss_dssp ------HHHHHHHHTT---EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-EEE
T ss_pred ------HHHHHHHHcC--CccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCcEEE
Confidence 0111111111 12222357999999999999999999986 77654 222 6788899999988 799999
Q ss_pred cCCCCCHHHHHHHHHcCcCEEEEcHHHHHH
Q 018519 270 DGGVRRGTDVFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 270 ~GGi~~g~dv~kalalGAd~V~igr~~l~~ 299 (354)
.|||.++.++..+|++|||+|++|+.|+..
T Consensus 196 AGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 196 AGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp ESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred ecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 999999999999999999999999999864
No 56
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.71 E-value=1e-15 Score=145.34 Aligned_cols=176 Identities=24% Similarity=0.321 Sum_probs=125.5
Q ss_pred ChHHHHHHHHHHHHcC-CCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHH-HHHhhhcCCc
Q 018519 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA-AYVAGQIDRS 211 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G-~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 211 (354)
..+...+.+...++++ ++++.+|+.||.. |. .+.+.. +......+. ++.+....|.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g---~~~l~~------~~e~l~~l~~~vk~~~~~Pv 164 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG---GRALGQ------DPELLEKLLEAVKAATKVPV 164 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC---hhhhcc------CHHHHHHHHHHHHhcccCce
Confidence 4566778888888888 8999999999973 21 111110 001122222 2233333454
Q ss_pred ccccc--c-CCHHHHHHHHHhCCCEEEEecCCc-CC-------------CCC---Cc----ChHHHHHHHHHHhcCCccE
Q 018519 212 LSWKG--V-LTAEDARIAVQAGAAGIIVSNHGA-RQ-------------LDY---VP----ATIMALEEVVKATQGRIPV 267 (354)
Q Consensus 212 ~~w~G--i-~~~~~a~~~~~~G~d~I~vs~~gg-~~-------------~~~---~~----~~~~~l~~i~~~~~~~i~v 267 (354)
+.+-. + .-.+.|+.+.++|+|+|++.|+-. +. ..+ |+ -.+..+.++++.+++++||
T Consensus 165 ~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipI 244 (310)
T COG0167 165 FVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPI 244 (310)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcE
Confidence 44322 1 134677899999999999999522 10 112 22 2356778888888778999
Q ss_pred EEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhcccce
Q 018519 268 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 339 (354)
Q Consensus 268 i~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l 339 (354)
|+.|||.|++|+++.+.+||++|++++.+++ .|+. +++.+.++|.++|...|++|++|+.+..+
T Consensus 245 IGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~----i~~~I~~~l~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 245 IGVGGIETGEDALEFILAGASAVQVGTALIY----KGPG----IVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred EEecCcCcHHHHHHHHHcCCchheeeeeeee----eCch----HHHHHHHHHHHHHHHcCCCCHHHHhchhc
Confidence 9999999999999999999999999999887 4543 78899999999999999999999987644
No 57
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.71 E-value=1.5e-15 Score=153.14 Aligned_cols=125 Identities=30% Similarity=0.352 Sum_probs=99.7
Q ss_pred ccc-ccCCHHHHHHHHHhCCCEEEEecCCcC----CC--CCCcChHHHHHHHHHHhcC-CccEEEcCCCCCHHHHHHHHH
Q 018519 213 SWK-GVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYVPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 213 ~w~-Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~~-~i~vi~~GGi~~g~dv~kala 284 (354)
.+- .|.+.|.|+.+.++|+|+|.|.-..|. +. ..+.|.+.++.+++++... ++|||++|||+++.|++|||+
T Consensus 271 v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~ 350 (479)
T PRK07807 271 IVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA 350 (479)
T ss_pred EEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 444 588999999999999999998543332 22 2367889999999886543 799999999999999999999
Q ss_pred cCcCEEEEcHHHHH---------------------------HHh-----------------hcCHHH-----------HH
Q 018519 285 LGASGIFIGRPVVY---------------------------SLA-----------------AEGEKG-----------VR 309 (354)
Q Consensus 285 lGAd~V~igr~~l~---------------------------~~~-----------------~~G~~g-----------v~ 309 (354)
+||++||+|+.|.- ++. ..|.++ +.
T Consensus 351 ~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~ 430 (479)
T PRK07807 351 AGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEEGISTSRMYLDPGRPGVE 430 (479)
T ss_pred cCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCCCccceeeeccCCCCCHH
Confidence 99999999997731 111 012111 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 310 RVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 310 ~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.++..|...|+..|.++|+.+|.||+..
T Consensus 431 ~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 431 DLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred HHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 8899999999999999999999999765
No 58
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.71 E-value=1.3e-15 Score=147.49 Aligned_cols=237 Identities=19% Similarity=0.210 Sum_probs=142.6
Q ss_pred chHHHHHhHhhcccceeecccc-CCCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CC
Q 018519 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (354)
Q Consensus 32 ~~~t~~~N~~~~~~i~l~pr~l-~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~ 109 (354)
-|.+++-....++-+...|-.+ +...+.|++|+++|++++.||++|. +.. . +....+.+.+.|..+++. +.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~----~--~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD----K--NAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC----C--CHHHHHHHHHCCCcEEEEecc
Confidence 4555666666666665555221 4567889999999999999998865 221 1 333444444777665542 21
Q ss_pred CC----------------------------CCH----HHHHhhC--CCceEEEEeecCC---hHHHHHHHHHHHHc--CC
Q 018519 110 ST----------------------------SSV----EEVASTG--PGIRFFQLYVYKD---RNVVAQLVRRAERA--GF 150 (354)
Q Consensus 110 ~~----------------------------~~~----eei~~~~--~~~~~~QLy~~~d---~~~~~~~~~~a~~~--G~ 150 (354)
.. ..+ +++.+.. ..|.++||..... .+...+.++.++++ .+
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~a 161 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYA 161 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhC
Confidence 10 011 2333322 2678899965321 12233444444443 38
Q ss_pred CEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhH-HHHHhhhc-----CCccccc--cc---CC
Q 018519 151 KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL-AAYVAGQI-----DRSLSWK--GV---LT 219 (354)
Q Consensus 151 ~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~w~--Gi---~~ 219 (354)
++|++|+.||.... . +...+ ......+ +++.+... .|.+.+- +. ..
T Consensus 162 d~ielN~scP~~~g--------~--------~~~~~-------~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~ 218 (327)
T cd04738 162 DYLVVNVSSPNTPG--------L--------RDLQG-------KEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEEL 218 (327)
T ss_pred CEEEEECCCCCCCc--------c--------ccccC-------HHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHH
Confidence 99999999997410 0 00000 0111122 22222222 2322221 21 13
Q ss_pred HHHHHHHHHhCCCEEEEecCCc-------------CCCCCCc----ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHH
Q 018519 220 AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 282 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ka 282 (354)
.+.++.+.++|+|+|+++|.-. .+...|+ ..++.+.++++.+++++|||++|||+|++|+.++
T Consensus 219 ~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~ 298 (327)
T cd04738 219 EDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEK 298 (327)
T ss_pred HHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHH
Confidence 5667788999999999987411 0011222 2367788888887667999999999999999999
Q ss_pred HHcCcCEEEEcHHHHH
Q 018519 283 LALGASGIFIGRPVVY 298 (354)
Q Consensus 283 lalGAd~V~igr~~l~ 298 (354)
+.+|||+||+||++++
T Consensus 299 l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 299 IRAGASLVQLYTGLVY 314 (327)
T ss_pred HHcCCCHHhccHHHHh
Confidence 9999999999999987
No 59
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.71 E-value=5.3e-16 Score=142.41 Aligned_cols=199 Identities=19% Similarity=0.214 Sum_probs=135.0
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCC-C-----HH--HHHhhCC--CceEEEEeecCChHHHHHHH
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-----VE--EVASTGP--GIRFFQLYVYKDRNVVAQLV 142 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~-~-----~e--ei~~~~~--~~~~~QLy~~~d~~~~~~~~ 142 (354)
|+++|||.+.+ ++++++.++++|...+.++|... + -+ ......+ .+..+||.. .+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g-~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG-SDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC-CCHHHHHHHH
Confidence 68999998877 88999999999988888887321 1 11 1111122 678999974 6889999999
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhcCCcc------ccc
Q 018519 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSL------SWK 215 (354)
Q Consensus 143 ~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~w~ 215 (354)
+++.++|+++|.||++||..-.| + .+.+.....+. ....+ ++++.+... .++ +|+
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~-~---------~~~G~~l~~~~-------~~~~eii~~v~~~~~-~~v~vk~r~~~~ 135 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVT-K---------GGAGAALLKDP-------ELVAEIVRAVREAVP-IPVTVKIRLGWD 135 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHh-C---------CCeeehhcCCH-------HHHHHHHHHHHHhcC-CCEEEEEeeccC
Confidence 99999999999999999973111 0 11111111110 01112 222222222 222 332
Q ss_pred cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc-CcCEEEEc
Q 018519 216 GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIG 293 (354)
Q Consensus 216 Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal-GAd~V~ig 293 (354)
.- ...+.++.+.++|+|+|.|++....+...++..++.+..+++.+ ++||+++|||++.+|+.+++.. |||+||+|
T Consensus 136 ~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 136 DEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 21 23455678889999999994432223344567788888888866 7999999999999999999997 89999999
Q ss_pred HHHHH
Q 018519 294 RPVVY 298 (354)
Q Consensus 294 r~~l~ 298 (354)
|+++.
T Consensus 214 r~~l~ 218 (231)
T cd02801 214 RGALG 218 (231)
T ss_pred HHhHh
Confidence 98774
No 60
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.71 E-value=5.6e-16 Score=169.15 Aligned_cols=246 Identities=22% Similarity=0.170 Sum_probs=167.5
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCC
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGF 150 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~ 150 (354)
-.+|.++.|+++++ +++...++|+++.+.|+....++. ....++... .....++|+ .+...+.+.+.+. .+
T Consensus 858 ~~rf~~~aMSfGal-S~eA~~aLA~a~~~~G~~sntGEG-G~~p~~~~~-~~~~~i~Qi-aSGrFGv~~e~l~-----~a 928 (1485)
T PRK11750 858 FKRFDSAAMSIGAL-SPEAHEALAIAMNRLGGRSNSGEG-GEDPARYGT-EKVSKIKQV-ASGRFGVTPAYLV-----NA 928 (1485)
T ss_pred hcccccccCCCCcc-CHHHHHHHHHHHHHhCCceecCCC-CCCHHHHhc-ccCCeEEEc-cCCcCCCCHHHhc-----cC
Confidence 34699999999875 567788999999999999877765 455665532 234568886 3345555555553 36
Q ss_pred CEEEEecCCCCC--------Cchh----HHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhc----CCcccc
Q 018519 151 KAIALTVDTPRL--------GRRE----ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI----DRSLSW 214 (354)
Q Consensus 151 ~ai~i~vd~p~~--------g~r~----~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w 214 (354)
++|.|.++.-.+ |.+. ..+| ..+++.+ .++... +.+-...+++..++..+. ..++..
T Consensus 929 ~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R---~~~~G~~--liSP~p--hhdiySieDL~qlI~~Lk~~~~~~~I~V 1001 (1485)
T PRK11750 929 EVLQIKVAQGAKPGEGGQLPGDKVNPLIARLR---YSVPGVT--LISPPP--HHDIYSIEDLAQLIFDLKQVNPKALVSV 1001 (1485)
T ss_pred CEEEEEecCCCCCCCCCcCccccCCHHHHHHc---CCCCCCC--CCCCCC--CccCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 888888865322 1111 1111 1122211 111111 111123444555544432 124444
Q ss_pred c-----ccCCHHHHHHHHHhCCCEEEEecC-CcCC-------CCCCcChHHHHHHHHHHh-----cCCccEEEcCCCCCH
Q 018519 215 K-----GVLTAEDARIAVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRG 276 (354)
Q Consensus 215 ~-----Gi~~~~~a~~~~~~G~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGi~~g 276 (354)
| || ...+..+.++|+|.|+|+|| ||+. .+.|.|....|.++.+.+ ++++.|+++||++|+
T Consensus 1002 Kl~a~~~v--g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~ 1079 (1485)
T PRK11750 1002 KLVSEPGV--GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTG 1079 (1485)
T ss_pred EEccCCCc--cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCH
Confidence 4 33 23444677899999999999 4442 234677667788888775 468999999999999
Q ss_pred HHHHHHHHcCcCEEEEcHHHHHHHhhc----------------------------CHHHHHHHHHHHHHHHHHHHHHhCC
Q 018519 277 TDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAMALSGC 328 (354)
Q Consensus 277 ~dv~kalalGAd~V~igr~~l~~~~~~----------------------------G~~gv~~~l~~l~~el~~~m~~~G~ 328 (354)
.|++||++||||.|.+||++|++++|. ..+.|.+++..+.+|++.+|..+|.
T Consensus 1080 ~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~ 1159 (1485)
T PRK11750 1080 LDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGV 1159 (1485)
T ss_pred HHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998762 1367899999999999999999999
Q ss_pred CChhhh
Q 018519 329 RSLKEI 334 (354)
Q Consensus 329 ~~i~~l 334 (354)
++++|+
T Consensus 1160 ~s~~el 1165 (1485)
T PRK11750 1160 RSLEDL 1165 (1485)
T ss_pred CCHHHh
Confidence 999999
No 61
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.69 E-value=4.6e-15 Score=141.02 Aligned_cols=206 Identities=24% Similarity=0.279 Sum_probs=135.1
Q ss_pred eeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCCC------------------------------
Q 018519 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST------------------------------ 111 (354)
Q Consensus 63 t~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~~------------------------------ 111 (354)
|+++|++++.||++|.-.... +....+.+.++|..+++. +...
T Consensus 1 ~~~~G~~~~nPv~~aag~~~~------~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLK------TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCCC------CHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 578999999999999865432 456777777777666552 2110
Q ss_pred -----CCHH----HHHhh----CCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCc
Q 018519 112 -----SSVE----EVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (354)
Q Consensus 112 -----~~~e----ei~~~----~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~ 178 (354)
..++ ++.+. ...+..+||.. .+.+...+.+++++++|+++|.+|++||..... .
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~----------~-- 141 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG----------R-- 141 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC----------c--
Confidence 0122 22221 12578899865 578888899999999999999999999973210 0
Q ss_pred CccccccCCccCcCcccchhh-HHHHHhhhcCCccccc--ccCC----HHHHHHHHHhCCCEEEEecC-CcCC-------
Q 018519 179 LTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLSWK--GVLT----AEDARIAVQAGAAGIIVSNH-GARQ------- 243 (354)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~--Gi~~----~~~a~~~~~~G~d~I~vs~~-gg~~------- 243 (354)
....+ .....+ ++++.+.. ..++..+ +..+ .+.++.+.++|+|+|+++|+ .++.
T Consensus 142 ---~~~~~-------~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~ 210 (289)
T cd02810 142 ---QLGQD-------PEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVG 210 (289)
T ss_pred ---ccccC-------HHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCc
Confidence 00000 001112 22222222 2233333 2233 56778889999999999875 2110
Q ss_pred -----CC---CCc----ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 244 -----LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 244 -----~~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.. .++ ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 211 ~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 211 PGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred cccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 01 111 23566778887775479999999999999999999999999999999886
No 62
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.69 E-value=4.6e-15 Score=141.49 Aligned_cols=223 Identities=18% Similarity=0.092 Sum_probs=138.0
Q ss_pred eeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCC--------------------------CCCH-
Q 018519 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TSSV- 114 (354)
Q Consensus 63 t~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~--------------------------~~~~- 114 (354)
++++|++|+.||++|.-...+ +....+.+.+.|..+++. +.. +..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCT------TLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCCC------CHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 478899999999999743222 445555656678776652 211 0112
Q ss_pred ---HHHHhh------CCCceEEEEeecCChHHHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhccCCCCcCccc
Q 018519 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (354)
Q Consensus 115 ---eei~~~------~~~~~~~QLy~~~d~~~~~~~~~~a~~~---G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~ 182 (354)
+++.+. ...|.++||.. . .+...+.++++++. |+++|++|+.||..... . .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g-~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------~-----~ 137 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTG-S-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------P-----P 137 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCC-C-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------c-----c
Confidence 233221 12578899875 3 77777878877775 69999999999973110 0 0
Q ss_pred cccCCccCcCcccchhhHHHHH-hhhcCCccccc--cc---CCHHHHHHHHHh--CCCEEEEecCC---------cC---
Q 018519 183 NFQGLDLGKMDEANDSGLAAYV-AGQIDRSLSWK--GV---LTAEDARIAVQA--GAAGIIVSNHG---------AR--- 242 (354)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~--Gi---~~~~~a~~~~~~--G~d~I~vs~~g---------g~--- 242 (354)
... +.+...++.+.+ +....|.+.+- +. ...+.|+.+.++ |+|+|++.|+- ++
T Consensus 138 ~~~-------~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~ 210 (294)
T cd04741 138 PAY-------DFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVV 210 (294)
T ss_pred ccC-------CHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcc
Confidence 000 001122222222 22233433222 11 123445566677 99999986642 11
Q ss_pred ----CCCCCcC-------hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHH
Q 018519 243 ----QLDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 311 (354)
Q Consensus 243 ----~~~~~~~-------~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~ 311 (354)
+..+|.+ .+..+.++++.+++++|||++|||.|++|+++++.+|||+||++|.+++ .|+. +
T Consensus 211 ~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp~----~ 282 (294)
T cd04741 211 LKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGPK----V 282 (294)
T ss_pred cCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCch----H
Confidence 1123333 2345566667775569999999999999999999999999999999886 2433 6
Q ss_pred HHHHHHHHHHHH
Q 018519 312 LEMLREEFELAM 323 (354)
Q Consensus 312 l~~l~~el~~~m 323 (354)
++.+.+||+.+|
T Consensus 283 ~~~i~~~L~~~~ 294 (294)
T cd04741 283 FARIEKELEDIW 294 (294)
T ss_pred HHHHHHHHHhhC
Confidence 777888888764
No 63
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=8.8e-16 Score=145.85 Aligned_cols=195 Identities=23% Similarity=0.226 Sum_probs=141.6
Q ss_pred EecccccccccCChhhHHHHHHHHHcCCcEEecCCCCC-CH---HHHH----hhCC--CceEEEEeecCChHHHHHHHHH
Q 018519 75 MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-SV---EEVA----STGP--GIRFFQLYVYKDRNVVAQLVRR 144 (354)
Q Consensus 75 ~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~-~~---eei~----~~~~--~~~~~QLy~~~d~~~~~~~~~~ 144 (354)
++|||-.++ ++++++.++++|...+.+.|... +. |..+ ...+ .|.++|+- .+|++.+.+.++.
T Consensus 22 i~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~ndp~~ll~Aa~l 94 (358)
T KOG2335|consen 22 IVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GNDPENLLKAARL 94 (358)
T ss_pred ccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CCCHHHHHHHHHH
Confidence 699997766 88999999999999888887321 00 1111 1123 68999974 6899999999999
Q ss_pred HHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhH-HHHHhhhcCCccccc---c--c-
Q 018519 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL-AAYVAGQIDRSLSWK---G--V- 217 (354)
Q Consensus 145 a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~---G--i- 217 (354)
+...+ ++|+||++||+. +....+++.-++.+. ....++ .++.+.+..| ++-| + +
T Consensus 95 v~~y~-D~idlNcGCPq~----------~a~~g~yGa~L~~~~-------eLv~e~V~~v~~~l~~p-Vs~KIRI~~d~~ 155 (358)
T KOG2335|consen 95 VQPYC-DGIDLNCGCPQK----------VAKRGGYGAFLMDNP-------ELVGEMVSAVRANLNVP-VSVKIRIFVDLE 155 (358)
T ss_pred hhhhc-CcccccCCCCHH----------HHhcCCccceeccCH-------HHHHHHHHHHHhhcCCC-eEEEEEecCcHH
Confidence 98887 999999999963 111233333333221 122232 2233333334 3333 2 1
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcC--CC--CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH-cCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGAR--QL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~--~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala-lGAd~V~i 292 (354)
-+.+.++.+.++|++.++| ||++ |. ..++..|+.+..+++.+++ +|||++|+|.+..|+-.++. .|||+||+
T Consensus 156 kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 3788999999999999999 7765 22 2578899999999999854 99999999999999999999 99999999
Q ss_pred cH-----HHHH
Q 018519 293 GR-----PVVY 298 (354)
Q Consensus 293 gr-----~~l~ 298 (354)
|| |++|
T Consensus 233 arglL~NPa~F 243 (358)
T KOG2335|consen 233 ARGLLYNPALF 243 (358)
T ss_pred cchhhcCchhh
Confidence 99 6666
No 64
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.58 E-value=1.1e-13 Score=132.04 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=128.8
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-------hh-CCCceEEEEeecCChHHHHHHH
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQLV 142 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~~~~~~~QLy~~~d~~~~~~~~ 142 (354)
.+||+.+||++.+ . ...|+.+++++|...+++.. ..+.|++. +. ...|+.++|....+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999998765 1 14899999999999888743 34555432 21 2367888874333334456778
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHH
Q 018519 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAED 222 (354)
Q Consensus 143 ~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~ 222 (354)
+.+.+.+.+.+.++.+.|.. +.++. .. ...+|--+.+++.
T Consensus 76 ~vi~e~~v~~V~~~~G~P~~-------------------------------------~~~lk-~~--Gi~v~~~v~s~~~ 115 (320)
T cd04743 76 AVVRAIKPTFALIAGGRPDQ-------------------------------------ARALE-AI--GISTYLHVPSPGL 115 (320)
T ss_pred HHHHhcCCcEEEEcCCChHH-------------------------------------HHHHH-HC--CCEEEEEeCCHHH
Confidence 88888899888877654420 01111 11 1112223569999
Q ss_pred HHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhc--------CCccEEEcCCCCCHHHHHHHHHcCc-----
Q 018519 223 ARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGA----- 287 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~i~vi~~GGi~~g~dv~kalalGA----- 287 (354)
|++++++|+|+|++.|+ |||. +..+++..++++.+.+. .++|||+.|||.++..+..++++||
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccccc
Confidence 99999999999999997 6764 23455556677666552 2699999999999999999999999
Q ss_pred ---CEEEEcHHHHHHH
Q 018519 288 ---SGIFIGRPVVYSL 300 (354)
Q Consensus 288 ---d~V~igr~~l~~~ 300 (354)
++|++|+.|+..-
T Consensus 194 Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 194 GAKVGVLMGTAYLFTE 209 (320)
T ss_pred ccccEEEEccHHhcch
Confidence 8999999998743
No 65
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.57 E-value=8.4e-14 Score=127.70 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=107.1
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
.+..+|+- ..+++...+.++.+++ +++.|+||++||++- . ...+.+...+.+. .....+.+
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~---------v-~~~g~G~~Ll~dp-------~~l~~iv~ 128 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQPE---------I-TEIGIGQELLKNK-------ELLKEFLT 128 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcHH---------H-cCCCCchhhcCCH-------HHHHHHHH
Confidence 67899985 4788888888888766 899999999999840 0 1122233333221 11222222
Q ss_pred HHhhhcCCc-----ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH
Q 018519 203 YVAGQIDRS-----LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 277 (354)
Q Consensus 203 ~~~~~~~~~-----~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~ 277 (354)
.+.....|. +.|..+...+.++.+.++|+|+|.| |.++.. .+...|+.|.++++.++ ++|||++|||+|++
T Consensus 129 av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~~g-~~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~e 204 (231)
T TIGR00736 129 KMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMYPG-KPYADMDLLKILSEEFN-DKIIIGNNSIDDIE 204 (231)
T ss_pred HHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCCCC-CchhhHHHHHHHHHhcC-CCcEEEECCcCCHH
Confidence 222222332 2343445678899999999999999 433211 12267999999999873 49999999999999
Q ss_pred HHHHHHHcCcCEEEEcHHHHH
Q 018519 278 DVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 278 dv~kalalGAd~V~igr~~l~ 298 (354)
|+.+++..|||+||+||+.+.
T Consensus 205 da~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 205 SAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHHHHHHhCCCeEEEcHhhcc
Confidence 999999999999999998775
No 66
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.57 E-value=4.3e-14 Score=136.75 Aligned_cols=87 Identities=33% Similarity=0.479 Sum_probs=75.5
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEecC--CcCCC--CCCcChHHHHHHHHHHhcCC-ccEEEcCCCCCHHHHHHHHHcCc
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGVRRGTDVFKALALGA 287 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-i~vi~~GGi~~g~dv~kalalGA 287 (354)
.+-.+.++..|+++.++|+|+|++.+. |||.. +..+++...++++++++ + +|||+.|||.++.++..||++||
T Consensus 130 v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI~dg~~i~AAlalGA 207 (336)
T COG2070 130 VIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGIADGRGIAAALALGA 207 (336)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCccChHHHHHHHHhcc
Confidence 333678999999999999999999875 66643 34677888999999998 5 99999999999999999999999
Q ss_pred CEEEEcHHHHHHHh
Q 018519 288 SGIFIGRPVVYSLA 301 (354)
Q Consensus 288 d~V~igr~~l~~~~ 301 (354)
++|++|+.|+...-
T Consensus 208 ~gVq~GT~Fl~t~E 221 (336)
T COG2070 208 DGVQMGTRFLATKE 221 (336)
T ss_pred HHHHhhhhhhcccc
Confidence 99999999987543
No 67
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.57 E-value=1.9e-13 Score=134.70 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=130.0
Q ss_pred eEcCeeeccceEecccc-cccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-------hh-C-CCceEEEEeec-
Q 018519 64 TVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY- 132 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~-~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~-~~~~~~QLy~~- 132 (354)
+++| +..|++.+||+ +.+ ...|+.+++++|....++... .+++++. +. . ..|+.++|+..
T Consensus 8 ~~lg--iryPii~gpMa~Gis------s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~ 78 (418)
T cd04742 8 EDYG--LRYAYVAGAMARGIA------SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSP 78 (418)
T ss_pred HHhC--CCccEECCcccCCCC------CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCC
Confidence 3455 45899999998 443 458999999999999998643 4566553 22 2 36888998753
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEe--cCC-CCCCchhHHhhhccCC-CCc-Cc--cccccCCccCcCcccchhhHHHHHh
Q 018519 133 KDRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTL-PPF-LT--LKNFQGLDLGKMDEANDSGLAAYVA 205 (354)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~i~--vd~-p~~g~r~~~~r~~~~~-p~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
.+++...+.++.+.+.|++.+... ++. |.. .+.+. .|+.. +.+ +. .+.+.... . .++.+
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~ViakVs-------r----~evAs 144 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANRIIAKVS-------R----PEVAE 144 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccceEEEecC-------C----hhhhh
Confidence 344555667888889998876543 111 110 01110 01100 000 00 00000000 0 00111
Q ss_pred hhcCCc-------ccccccCCHHHHHHHHHhC-CCEEEEec-CCcCCCCCCcChHHHHHHHHH---Hh------cCCccE
Q 018519 206 GQIDRS-------LSWKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVVK---AT------QGRIPV 267 (354)
Q Consensus 206 ~~~~~~-------~~w~Gi~~~~~a~~~~~~G-~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~------~~~i~v 267 (354)
....|+ +.-.|+.++++|+.+.+.| +|.|++.. .|||. +..+++..++.+.+ .+ ..++||
T Consensus 145 ~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipV 222 (418)
T cd04742 145 AFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGYRRPIRV 222 (418)
T ss_pred hhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccccCCCceE
Confidence 111110 1113888999999999999 59999974 26654 23345566666654 33 126999
Q ss_pred EEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHH
Q 018519 268 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 268 i~~GGi~~g~dv~kalalGAd~V~igr~~l~~ 299 (354)
++.|||.|+.+++.||++|||+|++|+.|+-.
T Consensus 223 iAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 223 GAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred EEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 99999999999999999999999999999753
No 68
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.55 E-value=1.1e-13 Score=132.58 Aligned_cols=122 Identities=29% Similarity=0.373 Sum_probs=94.3
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC----C--CCCCcChHHHHHHHHHHhc-CCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
.+.+.+.|+.++++|||++.|.-..|. | +.-|.|...++.++.+... -.+|||+||||.+..+++|||.+||+
T Consensus 299 NVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAs 378 (503)
T KOG2550|consen 299 NVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGAS 378 (503)
T ss_pred ceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCch
Confidence 578999999999999999999644332 3 2345666666666665443 37999999999999999999999999
Q ss_pred EEEEcHHH--------------------HHHH------h----------------hcCH-------HHHHHHHHHHHHHH
Q 018519 289 GIFIGRPV--------------------VYSL------A----------------AEGE-------KGVRRVLEMLREEF 319 (354)
Q Consensus 289 ~V~igr~~--------------------l~~~------~----------------~~G~-------~gv~~~l~~l~~el 319 (354)
.||+|.-+ .+++ . ++|. ..+.+++..+...+
T Consensus 379 tVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~gi 458 (503)
T KOG2550|consen 379 TVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGI 458 (503)
T ss_pred hheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHH
Confidence 99999833 1111 1 0121 24789999999999
Q ss_pred HHHHHHhCCCChhhhccc
Q 018519 320 ELAMALSGCRSLKEITRD 337 (354)
Q Consensus 320 ~~~m~~~G~~~i~~l~~~ 337 (354)
+..+...|++++++++..
T Consensus 459 qh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 459 QHSCQDIGARSLKELREM 476 (503)
T ss_pred hhhhhhhhHHHHHHHHHH
Confidence 999999999999999753
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.55 E-value=5.1e-13 Score=123.08 Aligned_cols=187 Identities=24% Similarity=0.276 Sum_probs=126.5
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHH-------HhhCCCceEEEEeecCCh-HHHHHHH
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDR-NVVAQLV 142 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~QLy~~~d~-~~~~~~~ 142 (354)
..|+++|||.+.+ +..+++++.+.|....++.. ..+.+++ .+....+..++++.. +. ....+.+
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~-~~~~~~~~~~ 73 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVP-SSNPDFEALL 73 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecC-CCCcCHHHHH
Confidence 4799999998875 66899999999976666432 2233322 222223456787653 32 3456778
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHH
Q 018519 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAED 222 (354)
Q Consensus 143 ~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~ 222 (354)
+.+.++|++.+.++-+.+. .+.+.+.....+ +. -.+.+.++
T Consensus 74 ~~~~~~g~d~v~l~~~~~~-------------------------------------~~~~~~~~~~i~-~i-~~v~~~~~ 114 (236)
T cd04730 74 EVALEEGVPVVSFSFGPPA-------------------------------------EVVERLKAAGIK-VI-PTVTSVEE 114 (236)
T ss_pred HHHHhCCCCEEEEcCCCCH-------------------------------------HHHHHHHHcCCE-EE-EeCCCHHH
Confidence 8899999999988643210 011111111111 11 13457789
Q ss_pred HHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHH
Q 018519 223 ARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 300 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~ 300 (354)
++.+.++|+|+|.+.+. ||+........++.+.++++.. ++||++.|||++++|+.+++.+|||+|++|+.++...
T Consensus 115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 99999999999998654 2322111235678888888776 7999999999999999999999999999999999876
Q ss_pred hhcCHH
Q 018519 301 AAEGEK 306 (354)
Q Consensus 301 ~~~G~~ 306 (354)
.+.+..
T Consensus 193 e~~~~~ 198 (236)
T cd04730 193 ESGASP 198 (236)
T ss_pred ccCCCH
Confidence 554444
No 70
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.55 E-value=4.7e-13 Score=129.77 Aligned_cols=208 Identities=20% Similarity=0.224 Sum_probs=122.2
Q ss_pred cceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCCC----------------------------
Q 018519 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 111 (354)
Q Consensus 61 ~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~~---------------------------- 111 (354)
++++++|.++.+||++|. +.. .+....+...+.|..+++. +...
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~~------~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GFD------KDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEECCEECCCCcEeCC-ccC------CCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 899999999999999953 221 2334566666668766652 2210
Q ss_pred CCHH----HHHhhC-CCceEEEEeecC---ChHHHHHHHHHHHHcC--CCEEEEecCCCCCCchhHHhhhccCCCCcCcc
Q 018519 112 SSVE----EVASTG-PGIRFFQLYVYK---DRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTL 181 (354)
Q Consensus 112 ~~~e----ei~~~~-~~~~~~QLy~~~---d~~~~~~~~~~a~~~G--~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~ 181 (354)
..++ ++.+.. ..+.++.+..+. ..+..++.++.+++++ ++++.+|+.||... + .
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~--------------~--~ 182 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP--------------G--L 182 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC--------------C--c
Confidence 0111 222211 145666663322 1122344455455444 99999999999631 0 0
Q ss_pred ccccCCccCcCcccchhhHHHHHh-hhc-------CCcccccc--cC---CHHHHHHHHHhCCCEEEEecCCc-C-----
Q 018519 182 KNFQGLDLGKMDEANDSGLAAYVA-GQI-------DRSLSWKG--VL---TAEDARIAVQAGAAGIIVSNHGA-R----- 242 (354)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~w~G--i~---~~~~a~~~~~~G~d~I~vs~~gg-~----- 242 (354)
+.... ......+.+.+. ... .|.+.+-. +. ..+.|+.+.++|+|+|++.|+-. +
T Consensus 183 ~~~~~-------~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~ 255 (335)
T TIGR01036 183 RDLQY-------KAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQG 255 (335)
T ss_pred ccccC-------HHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccC
Confidence 00000 011112211111 111 34333322 21 35667789999999999998521 0
Q ss_pred ----CCCC---CcC----hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 243 ----QLDY---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 243 ----~~~~---~~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
...+ |++ .+..+.++++.+++++|||+.|||.+++|+.++|.+|||+|++||.+++
T Consensus 256 ~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 256 PKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred ccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 0112 222 2445666666666689999999999999999999999999999999887
No 71
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.53 E-value=9.7e-14 Score=132.48 Aligned_cols=224 Identities=22% Similarity=0.259 Sum_probs=126.4
Q ss_pred cceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec-CCCC----------------------------
Q 018519 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 111 (354)
Q Consensus 61 ~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s-~~~~---------------------------- 111 (354)
|+|+++|.++++||++|. +..+ ++ ...+.+.++|..+++. +...
T Consensus 2 L~~~~~Gl~l~nPi~~as-G~~~----~~--~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS-GLDK----NG--EEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-T-TSST----SS--HHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECC-cCCC----Cc--hhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 789999999999999985 3221 22 3344555677655542 2110
Q ss_pred CCHH----HHHh---hC----CCceEEEEeecCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC
Q 018519 112 SSVE----EVAS---TG----PGIRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (354)
Q Consensus 112 ~~~e----ei~~---~~----~~~~~~QLy~~~d---~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~ 177 (354)
..++ ++.+ .. +-+..+.+. ..+ .+...+.+++++ .|++++.+|+.||... .
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-------------~ 139 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-------------G 139 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-------------T
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-------------C
Confidence 0111 1111 11 123444443 233 334444444444 7899999999999631 0
Q ss_pred cCccccccCCccCcCcccchhhHHHHHhhh-cCCcccccc--cCCH---HHHHHHHHhCCCEEEEecCCc----------
Q 018519 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQ-IDRSLSWKG--VLTA---EDARIAVQAGAAGIIVSNHGA---------- 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~G--i~~~---~~a~~~~~~G~d~I~vs~~gg---------- 241 (354)
+ ..+.. .......+.+.+.+. ..|.+.+-+ +... +.+..+.+.|+++|++.|.-.
T Consensus 140 ~---~~~~~------~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~ 210 (295)
T PF01180_consen 140 G---RPFGQ------DPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETR 210 (295)
T ss_dssp S---GGGGG------HHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTT
T ss_pred c---ccccc------CHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhc
Confidence 0 00000 001112233333333 234333322 2232 345556688999999877411
Q ss_pred CC-C---C---CCc----ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHH
Q 018519 242 RQ-L---D---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRR 310 (354)
Q Consensus 242 ~~-~---~---~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~ 310 (354)
+. . . +|+ ..+..+.++++.++.++|||+.|||.|++|++++|.+||++|++++.+++. |..
T Consensus 211 ~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~---- 282 (295)
T PF01180_consen 211 RPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG---- 282 (295)
T ss_dssp EESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----
T ss_pred ceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----
Confidence 01 1 1 122 235667778888866799999999999999999999999999999999872 443
Q ss_pred HHHHHHHHHHHHH
Q 018519 311 VLEMLREEFELAM 323 (354)
Q Consensus 311 ~l~~l~~el~~~m 323 (354)
+++.+.+||+.+|
T Consensus 283 ~~~~i~~~L~~~l 295 (295)
T PF01180_consen 283 VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC
Confidence 6788888888877
No 72
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.51 E-value=6.5e-13 Score=131.73 Aligned_cols=211 Identities=19% Similarity=0.176 Sum_probs=130.5
Q ss_pred eEcCeeeccceEecccc-cccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHh-------hCC-Cc-eEEEEeecC
Q 018519 64 TVLGFKISMPIMIAPTA-MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS-------TGP-GI-RFFQLYVYK 133 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~-~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~-------~~~-~~-~~~QLy~~~ 133 (354)
+++| +..|++.+||+ +.+ ...|+.+++++|....++.. ..+++++.+ ..+ ++ +.++|+.+.
T Consensus 13 ~~lg--iryPiiqgpMa~GiS------s~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~ 83 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMANGIA------SAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSP 83 (444)
T ss_pred HHhC--CCCcEECccccCCCC------CHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 3455 45899999998 443 45899999999999999864 356665532 223 36 889987643
Q ss_pred -ChHHHHHHHHHHHHcCCCEEEEe--cC-CCCCCchhHHhhhccCCC-Cc-Cc--cccccCCccCcCcccchhhHHHHHh
Q 018519 134 -DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLP-PF-LT--LKNFQGLDLGKMDEANDSGLAAYVA 205 (354)
Q Consensus 134 -d~~~~~~~~~~a~~~G~~ai~i~--vd-~p~~g~r~~~~r~~~~~p-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
+++...+.++.+.+.|++.+... ++ +|.. .+.+. .++... .+ +. .+.+... .+ .++.+
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~~ViakV-------sr----~~vAs 149 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRNRLIAKV-------SR----PEVAE 149 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccceEEEec-------CC----HHHHH
Confidence 33334466777788898877654 11 1211 01000 011000 00 00 0000000 00 11111
Q ss_pred hhcCCc-------ccccccCCHHHHHHHHHhC-CCEEEEec-CCcCCCCCCcChHHHHHHHH---HHh------cCCccE
Q 018519 206 GQIDRS-------LSWKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIPV 267 (354)
Q Consensus 206 ~~~~~~-------~~w~Gi~~~~~a~~~~~~G-~d~I~vs~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~i~v 267 (354)
....|+ +.-.|+.++++|+.+.+.| +|.|++.. .|||. +..+++..++.+. +.+ ..++||
T Consensus 150 ~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpV 227 (444)
T TIGR02814 150 AFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRV 227 (444)
T ss_pred HhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceE
Confidence 111111 2223888999999999999 49998863 26654 2346667777775 333 126899
Q ss_pred EEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHH
Q 018519 268 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 268 i~~GGi~~g~dv~kalalGAd~V~igr~~l~~ 299 (354)
++.|||.|+.++..||++|||+|++|+.|+-.
T Consensus 228 iAAGGI~t~~~vaAAlaLGAdgV~~GT~flat 259 (444)
T TIGR02814 228 GAAGGIGTPEAAAAAFMLGADFIVTGSVNQCT 259 (444)
T ss_pred EEeCCCCCHHHHHHHHHcCCcEEEeccHHHhC
Confidence 99999999999999999999999999999864
No 73
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.47 E-value=2e-12 Score=120.39 Aligned_cols=265 Identities=20% Similarity=0.268 Sum_probs=159.1
Q ss_pred hHHHHHhHhhcccceeeccccCCCCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEe-cCCCC
Q 018519 33 QWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWST 111 (354)
Q Consensus 33 ~~t~~~N~~~~~~i~l~pr~l~~~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~-s~~~~ 111 (354)
|.++|.-. -+-.|.+.||--.. .+..+.++++|.+++.||++|. |. +. +-.-.....+.|..++. ++...
T Consensus 58 E~sHrlAv-~aas~gl~Pr~~~~-d~~~L~~k~~g~~f~NPiglAA-Gf----dk--~~eaidgL~~~gfG~ieigSvTp 128 (398)
T KOG1436|consen 58 EFSHRLAV-LAASWGLLPRDRVA-DDASLETKVLGRKFSNPIGLAA-GF----DK--NAEAIDGLANSGFGFIEIGSVTP 128 (398)
T ss_pred HHHHHHHH-HHHHhCCCchhccC-CccchhhHHhhhhccCchhhhh-cc----Cc--chHHHHHHHhCCCceEEeccccc
Confidence 33444433 23567788875332 3457788899999999999986 22 22 22333444457765553 33221
Q ss_pred CC------------HH--------------------HHHh----hCC---CceEEEEeecC-ChHHHHHHHHHHHHcC--
Q 018519 112 SS------------VE--------------------EVAS----TGP---GIRFFQLYVYK-DRNVVAQLVRRAERAG-- 149 (354)
Q Consensus 112 ~~------------~e--------------------ei~~----~~~---~~~~~QLy~~~-d~~~~~~~~~~a~~~G-- 149 (354)
.+ .| .+.. ..| ....++|-.++ +.+...++++-+...|
T Consensus 129 ~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~ 208 (398)
T KOG1436|consen 129 KPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF 208 (398)
T ss_pred CCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHHHHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc
Confidence 10 01 1111 112 22345553333 4455667777777665
Q ss_pred CCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhh-HHHHHhhhc------C-Cccccc--ccC-
Q 018519 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQI------D-RSLSWK--GVL- 218 (354)
Q Consensus 150 ~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~-~~~~w~--Gi~- 218 (354)
++.++||+.||-.. +.+.+..- ..... +.+.+.... . |.+.+- .++
T Consensus 209 adylviNvSsPNtp----------------Glr~lq~k-------~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~ 265 (398)
T KOG1436|consen 209 ADYLVINVSSPNTP----------------GLRSLQKK-------SDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSE 265 (398)
T ss_pred cceEEEeccCCCCc----------------chhhhhhH-------HHHHHHHHHHHHHHhccccCCCCceEEEeccchhH
Confidence 57788999888531 01111100 00001 111111111 1 222221 111
Q ss_pred --CHHHHHHHHHhCCCEEEEecCC-cC----------CCC---CCcC----hHHHHHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 219 --TAEDARIAVQAGAAGIIVSNHG-AR----------QLD---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 219 --~~~~a~~~~~~G~d~I~vs~~g-g~----------~~~---~~~~----~~~~l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
-.+.+....+.+.|+++|+|.- .| .-. +|+| ..+.+.++....+++||||..|||.||.|
T Consensus 266 ~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~D 345 (398)
T KOG1436|consen 266 KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKD 345 (398)
T ss_pred HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHh
Confidence 2234555678999999999852 11 001 2322 35567777777888999999999999999
Q ss_pred HHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 279 VFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
+.+.+.+||+.|++++.+.| .|.. +++.++.||...|...|+.++.|+.+.
T Consensus 346 A~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 346 AYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 99999999999999998877 3543 789999999999999999999998764
No 74
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.36 E-value=2.3e-11 Score=118.83 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=141.1
Q ss_pred eccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCH------HH--HHhhCC--CceEEEEeecCChHHHH
Q 018519 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSV------EE--VASTGP--GIRFFQLYVYKDRNVVA 139 (354)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~------ee--i~~~~~--~~~~~QLy~~~d~~~~~ 139 (354)
+.--.++||.+-.+ +++++|.|+++|+..+.|+|+-+.. .| +.+..+ ..+.+||-. ..+....
T Consensus 263 ~r~K~~LaPLTTvG------NLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTVG------NLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAA 335 (614)
T ss_pred cccceeeccccccC------CccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHH
Confidence 33567899986543 7799999999999999999863211 12 222222 678999965 5566665
Q ss_pred HHHHHHH-HcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhc-CCccccc--
Q 018519 140 QLVRRAE-RAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI-DRSLSWK-- 215 (354)
Q Consensus 140 ~~~~~a~-~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~-- 215 (354)
+.++... ..-++.|+||++||.. +...+|-+..++.+. .....+.+..+.+. .-+++.+
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID----------lvy~qG~GsALl~rp-------~rl~~~l~~m~~vs~~iPiTVKiR 398 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID----------LVYRQGGGSALLNRP-------ARLIRILRAMNAVSGDIPITVKIR 398 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh----------eeeccCCcchhhcCc-------HHHHHHHHHHHHhccCCCeEEEEe
Confidence 6655443 4578999999999983 223445455544332 11112222222222 2244444
Q ss_pred -----ccC-CHHHHHHHH-HhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC--
Q 018519 216 -----GVL-TAEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-- 286 (354)
Q Consensus 216 -----Gi~-~~~~a~~~~-~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-- 286 (354)
|.. ..+...... +.|+++|+++|....|-+.-.+.|+.+.++.+.++..+|+|++|+|-|.+|-.+.+..+
T Consensus 399 TG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~ 478 (614)
T KOG2333|consen 399 TGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPN 478 (614)
T ss_pred cccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCC
Confidence 432 333444555 89999999944333467778899999999999887669999999999999999999866
Q ss_pred cCEEEEcH-----HHHHHHh
Q 018519 287 ASGIFIGR-----PVVYSLA 301 (354)
Q Consensus 287 Ad~V~igr-----~~l~~~~ 301 (354)
.|.||||| ||||...
T Consensus 479 v~svMIaRGALIKPWIFtEI 498 (614)
T KOG2333|consen 479 VDSVMIARGALIKPWIFTEI 498 (614)
T ss_pred cceEEeeccccccchHhhhh
Confidence 89999999 9998643
No 75
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.16 E-value=2.4e-09 Score=97.99 Aligned_cols=172 Identities=21% Similarity=0.169 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCC-----h--HHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 91 YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD-----R--NVVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 91 ~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d-----~--~~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
..+++++.+.|+..+.. .+...++++++...-|....+| +| - ....+.++.+.++|++++.+ |.+..
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~~- 99 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATLR- 99 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCCC-
Confidence 58999999999875542 1111223333333334433333 11 0 01235578889999996665 33321
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCC
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQ 243 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~ 243 (354)
..|.+ . ....+.+.+++. .......++.+.++++.+.++|+|.|.++++|-+.
T Consensus 100 ----------~~p~~---~-------------~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 100 ----------PRPDG---E-------------TLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred ----------CCCCC---C-------------CHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeec
Confidence 00100 0 011122222221 11112235679999999999999999876554332
Q ss_pred C--CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 244 L--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 244 ~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
. ....+.++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|+.++
T Consensus 153 ~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 153 ETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 1 23345578888888877 7999999999999999999999999999999865
No 76
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.08 E-value=8.5e-09 Score=100.24 Aligned_cols=74 Identities=23% Similarity=0.199 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCC----CC-CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQL----DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 294 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~----~~-~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr 294 (354)
+.++.+.++|+|.|.||+ |+.. .. ....++...++++.+ ++||++.|+|++++++.++|+.| ||+|++||
T Consensus 231 ~i~~~l~~~gvD~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 231 QYAKWMKEQGVDLIDVSS--GAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred HHHHHHHHcCCCEEEeCC--CCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 334677889999999954 4311 11 111456667777776 79999999999999999999977 99999999
Q ss_pred HHHH
Q 018519 295 PVVY 298 (354)
Q Consensus 295 ~~l~ 298 (354)
+++-
T Consensus 307 ~~ia 310 (337)
T PRK13523 307 ELLR 310 (337)
T ss_pred HHHh
Confidence 9874
No 77
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.02 E-value=1.1e-08 Score=89.94 Aligned_cols=185 Identities=21% Similarity=0.212 Sum_probs=107.4
Q ss_pred eEecccccccccCChhhHHHHHHHHHcCCcEEecCC-CC-------CC---HHHHHhhCCCceEEEEeecCChHHHHHHH
Q 018519 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-ST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (354)
Q Consensus 74 i~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~-~~-------~~---~eei~~~~~~~~~~QLy~~~d~~~~~~~~ 142 (354)
|++++|..+.. +....+++.+.+.|+.++.... .. .. ++.+......+.++|++.....+.....+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765431 2346888999998876554322 11 11 33334434467899998644444333345
Q ss_pred HHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHH
Q 018519 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAED 222 (354)
Q Consensus 143 ~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~ 222 (354)
+++.++|++.+.++..++...... ..-+.++.+....-++. ..+...++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~v~-~~~~~~~~ 126 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLARED------------------------------LELIRELREAVPDVKVV-VKLSPTGE 126 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHH------------------------------HHHHHHHHHhcCCceEE-EEECCCCc
Confidence 788999999999998876410000 00011222111011111 11111111
Q ss_pred HH--HHHHhCCCEEEEecCCcCCCCCCcCh--HHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 223 AR--IAVQAGAAGIIVSNHGARQLDYVPAT--IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 223 a~--~~~~~G~d~I~vs~~gg~~~~~~~~~--~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.. .+.+.|+|.|.++++.+.+....... ...+..+.+.. ++||+++|||.+++++.+++.+|||+|++||
T Consensus 127 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 127 LAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 11 16889999999988654433222221 23343443333 7999999999999999999999999999996
No 78
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.00 E-value=3.2e-08 Score=90.45 Aligned_cols=81 Identities=27% Similarity=0.323 Sum_probs=67.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC--CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
++.+++++..+.++|+|.|.+.+||-+. .....+.++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 5689999999999999999776665322 223345678899998877 799999999999999999999999999999
Q ss_pred HHHHH
Q 018519 294 RPVVY 298 (354)
Q Consensus 294 r~~l~ 298 (354)
+.++.
T Consensus 207 sal~~ 211 (219)
T cd04729 207 SAITR 211 (219)
T ss_pred hHHhC
Confidence 98764
No 79
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.00 E-value=2e-08 Score=97.14 Aligned_cols=75 Identities=25% Similarity=0.240 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCC--------CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc-CcCEEEE
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDY--------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 292 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~--------~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal-GAd~V~i 292 (354)
.++.+.++|+|+|.|++....+... ....++.+..+++.+ ++||+++|||+++.++.++++. |||.|++
T Consensus 233 la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 233 IAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 3668889999999996543222111 123356677788777 7999999999999999999998 7999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
||+++.
T Consensus 311 gR~~la 316 (327)
T cd02803 311 GRALLA 316 (327)
T ss_pred cHHHHh
Confidence 999875
No 80
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.99 E-value=5.8e-08 Score=94.71 Aligned_cols=76 Identities=25% Similarity=0.261 Sum_probs=56.2
Q ss_pred HHHHHHHHhC-CCEEEEecCCcCCC----------CCCc-ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-c
Q 018519 221 EDARIAVQAG-AAGIIVSNHGARQL----------DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 287 (354)
Q Consensus 221 ~~a~~~~~~G-~d~I~vs~~gg~~~----------~~~~-~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-A 287 (354)
+.++.+.++| +|.|.||...-.+. +... ..++.+..+++.+ ++|||++|||++.+++.++++.| |
T Consensus 232 ~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~ 309 (343)
T cd04734 232 EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHA 309 (343)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 3446778898 89999953211110 1111 1356677788877 79999999999999999999965 9
Q ss_pred CEEEEcHHHHH
Q 018519 288 SGIFIGRPVVY 298 (354)
Q Consensus 288 d~V~igr~~l~ 298 (354)
|+|++||+++.
T Consensus 310 D~V~~gR~~la 320 (343)
T cd04734 310 DMVGMTRAHIA 320 (343)
T ss_pred CeeeecHHhHh
Confidence 99999998874
No 81
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.92 E-value=3.3e-08 Score=87.13 Aligned_cols=165 Identities=22% Similarity=0.292 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCcEEecCCCCCCHHHHHhhCC--CceEEEEeec--CChH----HHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYVY--KDRN----VVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~~--~~~~~QLy~~--~d~~----~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
.||++|..-|...+=. .++++|++... ....+=|+.. .|.+ -+.+.++...++|++.|.+. +..
T Consensus 3 ~mA~Aa~~gGA~giR~----~~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD--aT~-- 74 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRA----NGVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD--ATD-- 74 (192)
T ss_dssp HHHHHHHHCT-SEEEE----ESHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE---SS--
T ss_pred HHHHHHHHCCceEEEc----CCHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe--cCC--
Confidence 6889999888776542 24666654321 2234444321 1111 14455677788999988764 322
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCC-cccccccCCHHHHHHHHHhCCCEEEEecCCcC
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR-SLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR 242 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~ 242 (354)
|.| |. .+.+++...... .+..-.|.+.|+++.+.++|+|.|--...|-+
T Consensus 75 -R~R--------p~---------------------~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT 124 (192)
T PF04131_consen 75 -RPR--------PE---------------------TLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYT 124 (192)
T ss_dssp -SS---------SS----------------------HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSS
T ss_pred -CCC--------Cc---------------------CHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCC
Confidence 211 20 122222221111 33334678999999999999999965434433
Q ss_pred C--CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 243 Q--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 243 ~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
. .. ..|.++.+.++++. .+|||+.|+|.+++++.++|.+||++|.+|+++-.
T Consensus 125 ~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 125 PYTKG-DGPDFELVRELVQA---DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp TTSTT-SSHHHHHHHHHHHT---TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 2 22 56788899888863 79999999999999999999999999999997653
No 82
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.86 E-value=4.2e-07 Score=88.53 Aligned_cols=74 Identities=23% Similarity=0.149 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHHH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 298 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l~ 298 (354)
+.++.+.++|+|.|.||.. .+........++...++++++ ++|||++|||+ ++++.++++.| ||.|++||+++.
T Consensus 245 ~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFLRKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHHHHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 4456778899999999642 222112344567778888887 89999999997 99999999976 999999999874
No 83
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=3.2e-07 Score=81.36 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=110.8
Q ss_pred cccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC--CceEEEEee----cCChH--HHHHHHHHHHHcCCCEEE
Q 018519 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYV----YKDRN--VVAQLVRRAERAGFKAIA 154 (354)
Q Consensus 83 ~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~--~~~~~QLy~----~~d~~--~~~~~~~~a~~~G~~ai~ 154 (354)
.|..++.-..+|.||.+.|....=- .++++|++... ...++-|+. +.+.- -+.+-++...++|++.|.
T Consensus 28 pl~~~~iv~~mA~Aa~~gGAvgiR~----~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA 103 (229)
T COG3010 28 PLDSPEIVAAMALAAEQGGAVGIRI----EGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIA 103 (229)
T ss_pred CCcchhHHHHHHHHHHhCCcceEee----cchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEE
Confidence 3444444558999999988876533 24555554322 222333332 11111 134556667778988776
Q ss_pred EecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCc-ccccccCCHHHHHHHHHhCCCE
Q 018519 155 LTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LSWKGVLTAEDARIAVQAGAAG 233 (354)
Q Consensus 155 i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~Gi~~~~~a~~~~~~G~d~ 233 (354)
+ |+.- |+| |.+ .+.+++...+.+. +..-.+.+.|++..|.++|+|+
T Consensus 104 ~--DaT~---R~R--------P~~--------------------~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~ 150 (229)
T COG3010 104 F--DATD---RPR--------PDG--------------------DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDI 150 (229)
T ss_pred e--eccc---CCC--------Ccc--------------------hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcE
Confidence 5 4432 211 221 2344444433332 3333567999999999999999
Q ss_pred EE--EecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 234 II--VSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 234 I~--vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
|- +||.-++......|.++.+.++.++ +++||+.|.+.|++++.+++.+||++|.+|+++-
T Consensus 151 IGTTLsGYT~~~~~~~~pDf~lvk~l~~~---~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 151 IGTTLSGYTGYTEKPTEPDFQLVKQLSDA---GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred EecccccccCCCCCCCCCcHHHHHHHHhC---CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 85 3333222223356778888888772 8999999999999999999999999999998653
No 84
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.83 E-value=4.5e-07 Score=88.24 Aligned_cols=75 Identities=25% Similarity=0.230 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCEEEEecCCcC--CCCCC-c-ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHH
Q 018519 222 DARIAVQAGAAGIIVSNHGAR--QLDYV-P-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPV 296 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~--~~~~~-~-~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~ 296 (354)
.++.+.+.|+|.|.|+.++.+ +.... + ..++.+.++++.+ ++||+++|+|.++.++.++++.| ||+|++||++
T Consensus 246 ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~ 323 (336)
T cd02932 246 LAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGREL 323 (336)
T ss_pred HHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHH
Confidence 344667889999999654322 11111 1 1245667778777 79999999999999999999988 9999999998
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 324 i~ 325 (336)
T cd02932 324 LR 325 (336)
T ss_pred Hh
Confidence 85
No 85
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.80 E-value=3.6e-08 Score=92.21 Aligned_cols=81 Identities=27% Similarity=0.399 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC------------------C--C----------CCcChHHHHHHHHHHhcCCc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ------------------L--D----------YVPATIMALEEVVKATQGRI 265 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~------------------~--~----------~~~~~~~~l~~i~~~~~~~i 265 (354)
|+.+.++|.++.+.|+|.|--.|..|+. + + .-.++++.|.++++.. ++
T Consensus 127 d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~i 204 (293)
T PRK04180 127 GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RL 204 (293)
T ss_pred cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CC
Confidence 7889999999999999999776433321 0 0 1246788888888866 79
Q ss_pred cEE--EcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 266 PVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 266 ~vi--~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
||+ +.|||.|++|+.+++.+||++|++|+.+..
T Consensus 205 PVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 205 PVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 998 999999999999999999999999998763
No 86
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.78 E-value=7.5e-07 Score=87.28 Aligned_cols=76 Identities=24% Similarity=0.198 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCEEEEec--CCcCCC----CCCcC-hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEE
Q 018519 221 EDARIAVQAGAAGIIVSN--HGARQL----DYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 292 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~--~gg~~~----~~~~~-~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~i 292 (354)
+.++.+.++|+|.|.||. |..+.. ..... ......++++.+ ++||+++|++++..++.++++.| +|.|++
T Consensus 228 ~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 228 ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 344677889999999964 222211 11111 133456777777 89999999999999999999976 999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
||+++.
T Consensus 306 gR~~l~ 311 (353)
T cd02930 306 ARPFLA 311 (353)
T ss_pred hHHHHH
Confidence 998874
No 87
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.77 E-value=5.7e-07 Score=89.01 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCEEEEecCCcC--CCCC-Cc------Ch-HHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEE
Q 018519 222 DARIAVQAGAAGIIVSNHGAR--QLDY-VP------AT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGI 290 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~--~~~~-~~------~~-~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V 290 (354)
.++.+.++|+|.|.|+ +|+ +... .+ .. +.....+++.+ ++||+++|||++++++.++|+.| ||+|
T Consensus 257 ~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 257 AAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMI 332 (382)
T ss_pred HHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 3467778999999995 333 1111 11 11 34566777777 79999999999999999999976 9999
Q ss_pred EEcHHHHH
Q 018519 291 FIGRPVVY 298 (354)
Q Consensus 291 ~igr~~l~ 298 (354)
++||+++.
T Consensus 333 ~~gR~~la 340 (382)
T cd02931 333 SLGRPLLA 340 (382)
T ss_pred eechHhHh
Confidence 99999875
No 88
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.76 E-value=2.9e-07 Score=85.92 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=68.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCC-----------------------------C-CCcChHHHHHHHHHHhcCCc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------------D-YVPATIMALEEVVKATQGRI 265 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~-----------------------------~-~~~~~~~~l~~i~~~~~~~i 265 (354)
++.+.++|.++.+.|+|.|--..+|++.. . ...+.++.|.++.+.+ ++
T Consensus 118 D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~--~i 195 (283)
T cd04727 118 GARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG--RL 195 (283)
T ss_pred cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--CC
Confidence 78899999999999999998766555432 0 1246788899998876 79
Q ss_pred cEE--EcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 266 PVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 266 ~vi--~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
||+ +.|||.+++++.+++.+||++|++|+.++.
T Consensus 196 PVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 196 PVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 997 999999999999999999999999998763
No 89
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.75 E-value=1.7e-06 Score=93.08 Aligned_cols=75 Identities=25% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCC----CCCc-ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGR 294 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~----~~~~-~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr 294 (354)
+.++.+.++|+|.|.||. |++.. ..++ .......++++.+ ++||++.|+|++++++.++|+.| ||+|++||
T Consensus 642 ~~~~~l~~~g~d~i~vs~-g~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR 718 (765)
T PRK08255 642 EIARAFKAAGADLIDVSS-GQVSKDEKPVYGRMYQTPFADRIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALAR 718 (765)
T ss_pred HHHHHHHhcCCcEEEeCC-CCCCcCCCCCcCccccHHHHHHHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcH
Confidence 445677899999999953 22211 0111 1123445677766 79999999999999999999965 99999999
Q ss_pred HHHH
Q 018519 295 PVVY 298 (354)
Q Consensus 295 ~~l~ 298 (354)
++|.
T Consensus 719 ~~l~ 722 (765)
T PRK08255 719 PHLA 722 (765)
T ss_pred HHHh
Confidence 9885
No 90
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.71 E-value=2.1e-06 Score=84.22 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=56.0
Q ss_pred CCHHHHH----HHHHhCCCEEEEecCCc-CCCCCCcChHHHHHHHHHHhcCCccEEEcCCC------------------C
Q 018519 218 LTAEDAR----IAVQAGAAGIIVSNHGA-RQLDYVPATIMALEEVVKATQGRIPVFLDGGV------------------R 274 (354)
Q Consensus 218 ~~~~~a~----~~~~~G~d~I~vs~~gg-~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi------------------~ 274 (354)
.+++++. .+.++|+|.|-|+...- .+... ...+.....+++.+ ++||++.|+| +
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~-~~~~~~~~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~ 308 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFE-GSELNLAGWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPA 308 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcC-ccchhHHHHHHHHc--CCCEEEECCcccccccccccccccccccC
Confidence 4555443 45789999998865311 11111 12345556677766 7999999999 6
Q ss_pred CHHHHHHHHHcC-cCEEEEcHHHHH
Q 018519 275 RGTDVFKALALG-ASGIFIGRPVVY 298 (354)
Q Consensus 275 ~g~dv~kalalG-Ad~V~igr~~l~ 298 (354)
+++++.++|+.| ||+|++||++|.
T Consensus 309 ~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 309 SLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred CHHHHHHHHHCCCCCeehhhHHHHh
Confidence 999999999976 999999999874
No 91
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.68 E-value=6.1e-07 Score=83.82 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=68.3
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCC---------------------C----------CCcChHHHHHHHHHHhcCC
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------YVPATIMALEEVVKATQGR 264 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~---------------------~----------~~~~~~~~l~~i~~~~~~~ 264 (354)
|+.+.++|.++.+.|+|.|--.+.||+.. . .-.++++.|.++++.. +
T Consensus 120 d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~--~ 197 (287)
T TIGR00343 120 GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG--K 197 (287)
T ss_pred cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC--C
Confidence 78899999999999999998766666531 0 0136788888888865 7
Q ss_pred ccEE--EcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 265 IPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 265 i~vi--~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
+||+ +.|||.|++|+.+++.+|||+|++|+.+..
T Consensus 198 iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 198 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 9998 999999999999999999999999998763
No 92
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.68 E-value=3.1e-07 Score=90.01 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCC--CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 222 DARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.++.+.++|+|.|.|+.++.+. ..........+..+++.++.++|||+.|||++++++.++++.|||+|++||+++.
T Consensus 240 i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 240 LVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 4467789999999997543221 1112223455566666664579999999999999999999999999999999875
No 93
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.64 E-value=4.5e-06 Score=82.05 Aligned_cols=71 Identities=14% Similarity=0.052 Sum_probs=52.3
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 298 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l~ 298 (354)
++.+.+.|+|.|.||... . ....+-....-.++++.+ ++||++.|++ +++.+.++|+.| ||+|++|||++.
T Consensus 255 ~~~L~~~giD~i~vs~~~-~-~~~~~~~~~~~~~ik~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPD-W-AGGEPYSDAFREKVRARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHHHHcCCCEEEecccc-c-cCCccccHHHHHHHHHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 567788899999997521 1 001111223345666666 7899999996 899999999988 999999999985
No 94
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.62 E-value=5e-06 Score=82.01 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=54.0
Q ss_pred CCHHHH----HHHHHhCCCEEEEecCC----cCCCCC--CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-
Q 018519 218 LTAEDA----RIAVQAGAAGIIVSNHG----ARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 286 (354)
Q Consensus 218 ~~~~~a----~~~~~~G~d~I~vs~~g----g~~~~~--~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG- 286 (354)
.+.+++ +.+. ..+|.|.|+... +..... ....++...++++.+ ++|||+.|||++++++.++|..|
T Consensus 236 ~~~~e~~~~~~~l~-~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~ 312 (370)
T cd02929 236 ESEGEGVEFVEMLD-ELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGI 312 (370)
T ss_pred CCHHHHHHHHHHHH-hhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 355544 3343 348999986421 000000 111245566777776 79999999999999999999977
Q ss_pred cCEEEEcHHHHH
Q 018519 287 ASGIFIGRPVVY 298 (354)
Q Consensus 287 Ad~V~igr~~l~ 298 (354)
||+|++||++|-
T Consensus 313 ~D~V~~gR~~la 324 (370)
T cd02929 313 LDLIGAARPSIA 324 (370)
T ss_pred CCeeeechHhhh
Confidence 999999999874
No 95
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.60 E-value=1.9e-07 Score=86.75 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=66.4
Q ss_pred ccc--ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH---cCc
Q 018519 213 SWK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGA 287 (354)
Q Consensus 213 ~w~--Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala---lGA 287 (354)
+|+ .....+.++.+.+.|++.|++.+-..-+...|+ .++.+.++.+.+ ++|||++|||+|.+|+.+++. .||
T Consensus 140 Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~Gv 216 (241)
T PRK14024 140 GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGV 216 (241)
T ss_pred CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCc
Confidence 554 333467788999999999999543222334454 899999999877 899999999999999999875 499
Q ss_pred CEEEEcHHHHH
Q 018519 288 SGIFIGRPVVY 298 (354)
Q Consensus 288 d~V~igr~~l~ 298 (354)
|+|++||+++.
T Consensus 217 dgV~igra~~~ 227 (241)
T PRK14024 217 EGAIVGKALYA 227 (241)
T ss_pred cEEEEeHHHHc
Confidence 99999999886
No 96
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.59 E-value=4.2e-06 Score=76.25 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+.+.++++++.+.|+|.+.+.+.-++ ...+..+.+.++++.++.++||++.|||.+++|+.+++.+|||+|.+|+.+
T Consensus 128 v~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai 204 (217)
T cd00331 128 VHDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESL 204 (217)
T ss_pred ECCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 46889999999999999988533222 224445777888776544789999999999999999999999999999987
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 205 ~~ 206 (217)
T cd00331 205 MR 206 (217)
T ss_pred cC
Confidence 64
No 97
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.58 E-value=5.3e-06 Score=75.23 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=99.4
Q ss_pred EeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCc----------cCcCcccchh
Q 018519 129 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD----------LGKMDEANDS 198 (354)
Q Consensus 129 Ly~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~ 198 (354)
+....+.+...+.++.+.+.|.+.+.++...|..-...+.++..+.-+..++...+-... ..........
T Consensus 15 v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~ 94 (206)
T PRK09140 15 ILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDP 94 (206)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCH
Confidence 344567788888888888888999999888875333334444444211111111110000 0000001111
Q ss_pred hHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 199 GLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 199 ~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
.+.+.... .....+-|+.+++++..+.++|+|.|.+.- .....++.+.++++.++.++|+++.||| +.++
T Consensus 95 ~v~~~~~~--~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fp-------a~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n 164 (206)
T PRK09140 95 EVIRRAVA--LGMVVMPGVATPTEAFAALRAGAQALKLFP-------ASQLGPAGIKALRAVLPPDVPVFAVGGV-TPEN 164 (206)
T ss_pred HHHHHHHH--CCCcEEcccCCHHHHHHHHHcCCCEEEECC-------CCCCCHHHHHHHHhhcCCCCeEEEECCC-CHHH
Confidence 22222221 112223378999999999999999999832 1223366777777666436999999999 8899
Q ss_pred HHHHHHcCcCEEEEcHHHHH
Q 018519 279 VFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~ 298 (354)
+...+++||++|.+++.+..
T Consensus 165 ~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 165 LAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHCCCeEEEEehHhcc
Confidence 99999999999999998754
No 98
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.58 E-value=4.2e-06 Score=82.04 Aligned_cols=77 Identities=30% Similarity=0.342 Sum_probs=56.5
Q ss_pred HHHHHHHHHhC-CCEEEEecCCcC---CCCCCcChH--HHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEE
Q 018519 220 AEDARIAVQAG-AAGIIVSNHGAR---QLDYVPATI--MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G-~d~I~vs~~gg~---~~~~~~~~~--~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~i 292 (354)
.+.++.+.+.| +|.|.+++-+-. ......+.+ .....++..+ .+|||+.|+|++++.+.++|+-| ||.|.+
T Consensus 240 ~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~ 317 (363)
T COG1902 240 VELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAM 317 (363)
T ss_pred HHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 55677889999 799999763221 111111222 2334455555 69999999999999999999998 999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
|||||.
T Consensus 318 gR~~la 323 (363)
T COG1902 318 GRPFLA 323 (363)
T ss_pred chhhhc
Confidence 999985
No 99
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.56 E-value=2.5e-07 Score=87.68 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 018519 251 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRS 330 (354)
Q Consensus 251 ~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 330 (354)
+..+..|++.++ ..|+.+.|||-++.|.+..+.+|++.|++.+..+- .|.. .++.+-.||+.+|.+.|.++
T Consensus 344 l~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~t 414 (471)
T KOG1799|consen 344 LAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFST 414 (471)
T ss_pred HHHHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchh
Confidence 444556666664 78999999999999999999999999999997664 2322 46788899999999999999
Q ss_pred hhhhccccee
Q 018519 331 LKEITRDHIV 340 (354)
Q Consensus 331 i~~l~~~~l~ 340 (354)
|++++++.|.
T Consensus 415 i~~~~G~SL~ 424 (471)
T KOG1799|consen 415 IEEFRGHSLQ 424 (471)
T ss_pred hhhccCcchh
Confidence 9999998665
No 100
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.56 E-value=4.3e-07 Score=84.23 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc-CcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal-GAd~V~igr~~ 296 (354)
...+.++.+.+.|+|.|++++-... .......++.+.++.+.+ ++|||++|||++.+|+.+++.. |||+|++||++
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~-g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRD-GTKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCC-CCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 4567889999999999999552110 111224678888888876 8999999999999999999996 99999999998
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
..
T Consensus 227 ~~ 228 (243)
T cd04731 227 HF 228 (243)
T ss_pred Hc
Confidence 86
No 101
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.55 E-value=7.1e-06 Score=74.77 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=101.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCC-CC-cCccccccCCcc----------CcCc
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDL----------GKMD 193 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~-p~-~~~~~~~~~~~~----------~~~~ 193 (354)
.+-+....+.+.....++.+.+.|.+.+.+|+++|..-.-.+.++..+.- |. -++...+..... ..+.
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 44455567888888888989999999999999998754444555544421 10 111111111000 0000
Q ss_pred ccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCC
Q 018519 194 EANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 273 (354)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi 273 (354)
+....++.+...... ...+-|++++.++..+.++|+|.|.+.-. ..-....|..++..++ .+|+++.|||
T Consensus 95 P~~~~~v~~~~~~~~--i~~iPG~~T~~E~~~A~~~Gad~vklFPa-------~~~G~~~ik~l~~~~p-~ip~~atGGI 164 (213)
T PRK06552 95 PSFNRETAKICNLYQ--IPYLPGCMTVTEIVTALEAGSEIVKLFPG-------STLGPSFIKAIKGPLP-QVNVMVTGGV 164 (213)
T ss_pred CCCCHHHHHHHHHcC--CCEECCcCCHHHHHHHHHcCCCEEEECCc-------ccCCHHHHHHHhhhCC-CCEEEEECCC
Confidence 011111222221111 11222899999999999999999998321 1122455666666553 6999999999
Q ss_pred CCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 274 RRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 274 ~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
. .+.+.+.+++||++|.+|+.++-
T Consensus 165 ~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 165 N-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred C-HHHHHHHHHCCCcEEEEchHHhC
Confidence 7 79999999999999999998853
No 102
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.53 E-value=3e-07 Score=86.26 Aligned_cols=80 Identities=23% Similarity=0.228 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH-HcCcCEEEEcHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRP 295 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal-alGAd~V~igr~ 295 (354)
+...+.++++.+.|++.|++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+|+|.+|++
T Consensus 152 ~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a 228 (258)
T PRK01033 152 KDPLELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSL 228 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcce
Confidence 3456778889999999999954322123345 4889999999876 89999999999999999999 799999999999
Q ss_pred HHHH
Q 018519 296 VVYS 299 (354)
Q Consensus 296 ~l~~ 299 (354)
|.|.
T Consensus 229 ~~~~ 232 (258)
T PRK01033 229 FVFK 232 (258)
T ss_pred eeeC
Confidence 9983
No 103
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.52 E-value=2e-06 Score=83.75 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCEEEEecCCcC--CCCCC---------cC--hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-
Q 018519 221 EDARIAVQAGAAGIIVSNHGAR--QLDYV---------PA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG- 286 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~--~~~~~---------~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG- 286 (354)
+.++.+.++|+|.|.|+ +|+ +.... ++ .++...++++.+ ++||+++|+|.+..++.++++.|
T Consensus 240 ~ia~~Le~~Gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~ 315 (338)
T cd04733 240 EVVEALEEAGVDLVELS--GGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGA 315 (338)
T ss_pred HHHHHHHHcCCCEEEec--CCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 33467789999999995 443 21110 01 135566778777 89999999999999999999987
Q ss_pred cCEEEEcHHHHH
Q 018519 287 ASGIFIGRPVVY 298 (354)
Q Consensus 287 Ad~V~igr~~l~ 298 (354)
||.|++||+++-
T Consensus 316 aD~V~lgR~~ia 327 (338)
T cd04733 316 VDGIGLARPLAL 327 (338)
T ss_pred CCeeeeChHhhh
Confidence 999999999874
No 104
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.48 E-value=6.5e-07 Score=82.09 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.++..++++.++|++.|-.-+. =|+. .|..+.+.|..+++.. ++|||++|||.+++|+.+++.+|||+|++|+.+
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SAI 207 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 207 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHh
Confidence 5899999999999999965221 0111 3566788888888764 799999999999999999999999999999987
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 208 t 208 (248)
T cd04728 208 A 208 (248)
T ss_pred c
Confidence 5
No 105
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.46 E-value=2.2e-05 Score=73.09 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
.+.+..+...+..-..++++-.||+....-+...+.+.++++... +.||+++|||++++++.+++..|||++.+|+.++
T Consensus 140 T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 140 FPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred CCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 457777888887666666654444322222223346666666553 5789999999999999999999999999999877
Q ss_pred HHH
Q 018519 298 YSL 300 (354)
Q Consensus 298 ~~~ 300 (354)
..+
T Consensus 219 ~~~ 221 (244)
T PRK13125 219 EEL 221 (244)
T ss_pred HHH
Confidence 543
No 106
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.45 E-value=1.2e-06 Score=80.66 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.++.+.+.|++.|++.+....+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..|||+|++||.++
T Consensus 147 ~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 345677889999999999954322222234 6789999998877 7999999999999999999999999999999987
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 224 ~ 224 (234)
T cd04732 224 E 224 (234)
T ss_pred c
Confidence 5
No 107
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.44 E-value=7e-06 Score=77.10 Aligned_cols=163 Identities=21% Similarity=0.189 Sum_probs=104.8
Q ss_pred HHHHHHHHHcCCcEE--ecCC--CCCCHHHHHhh---CCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 91 YATARAASAAGTIMT--LSSW--STSSVEEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 91 ~~la~aa~~~G~~~~--~s~~--~~~~~eei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
..+|+...+.|+... +++. ...+++++.+. ..-|... +|.-.....++.+.++|++++-+.....
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~-----kdfi~~~~qi~~a~~~GAD~VlLi~~~l--- 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLR-----KDFIIDPYQIYEARAAGADAILLIVAAL--- 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEe-----eeecCCHHHHHHHHHcCCCEEEEEeccC---
Confidence 589999999997543 2222 12356666543 2223332 2222223357888999999987754321
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc---ccCCHHHHHHHHHhCCCEEEEecCC
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---GVLTAEDARIAVQAGAAGIIVSNHG 240 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~---Gi~~~~~a~~~~~~G~d~I~vs~~g 240 (354)
+. ..+.++++.... ++-. -+.+.++++++.++|+|.|-+.|
T Consensus 145 ------------~~--------------------~~l~~li~~a~~--lGl~~lvevh~~~E~~~A~~~gadiIgin~-- 188 (260)
T PRK00278 145 ------------DD--------------------EQLKELLDYAHS--LGLDVLVEVHDEEELERALKLGAPLIGINN-- 188 (260)
T ss_pred ------------CH--------------------HHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHcCCCEEEECC--
Confidence 00 012222222111 1111 35689999999999999998842
Q ss_pred cCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 241 ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 241 g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
+.+..-.+.++...++.+.+++.+++|+-|||.+++|+.+++.+|||+|.+|+.++.
T Consensus 189 -rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 189 -RNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred -CCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 333333445666777777665557999999999999999999999999999998874
No 108
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.43 E-value=9.5e-07 Score=81.12 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
.+++.++++.++|++.|-.-+. | +. .|..+.+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++++.
T Consensus 132 ~d~~~ak~l~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 132 DDPVLAKRLEEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 5899999999999999955111 2 11 3566677788888764 79999999999999999999999999999998
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
+.
T Consensus 207 It 208 (250)
T PRK00208 207 IA 208 (250)
T ss_pred hh
Confidence 75
No 109
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.42 E-value=1.7e-06 Score=80.80 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH-cCcCEEEEcHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRP 295 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala-lGAd~V~igr~ 295 (354)
+...+.++.+.+.|++.|++.++.......+ +.++.+.++.+.. ++|||++|||++.+|+.+++. .||++|++|+.
T Consensus 153 ~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 153 LDAVEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 3446777899999999999966432111123 3688889988876 799999999999999999997 59999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
+.+
T Consensus 230 l~~ 232 (253)
T PRK02083 230 FHF 232 (253)
T ss_pred HHc
Confidence 876
No 110
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.41 E-value=6.9e-06 Score=80.14 Aligned_cols=74 Identities=28% Similarity=0.353 Sum_probs=55.0
Q ss_pred HHHHHHhCCCEEEEecCCcC------C-CCC-Cc--ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEE
Q 018519 223 ARIAVQAGAAGIIVSNHGAR------Q-LDY-VP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIF 291 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~------~-~~~-~~--~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~ 291 (354)
++.+.++|+|.+.++..... . ... .. ..+.....+++.+ ++|||+.|||++++.+.++++.| ||.|.
T Consensus 242 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~ 319 (341)
T PF00724_consen 242 AKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVA 319 (341)
T ss_dssp HHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEE
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEee
Confidence 67888999999977542211 0 111 11 1234556677776 89999999999999999999987 99999
Q ss_pred EcHHHHH
Q 018519 292 IGRPVVY 298 (354)
Q Consensus 292 igr~~l~ 298 (354)
+|||++.
T Consensus 320 ~gR~~la 326 (341)
T PF00724_consen 320 MGRPLLA 326 (341)
T ss_dssp ESHHHHH
T ss_pred ccHHHHh
Confidence 9999985
No 111
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.40 E-value=1.5e-06 Score=80.09 Aligned_cols=78 Identities=24% Similarity=0.184 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH-HcCcCEEEEcHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRP 295 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal-alGAd~V~igr~ 295 (354)
....+.++.+.++|+|.|++++....+...+ +.++.+.++++.+ ++||+++|||++.+|+.+++ .+|||+|++|++
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 3456788999999999999976322212223 4688899998877 79999999999999999944 599999999998
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
|-
T Consensus 230 ~h 231 (232)
T TIGR03572 230 FH 231 (232)
T ss_pred hh
Confidence 74
No 112
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.39 E-value=1.4e-06 Score=80.13 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVV 297 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l 297 (354)
..+.++.+.+.|++.|++.+-..-+...| +.++.+.++.+.+ ++|||++|||++.+|+.+++..| |++|++||.++
T Consensus 148 ~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 148 AEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHH
Confidence 36777888899999988843211122234 6789999999877 69999999999999999999988 99999999988
Q ss_pred HH
Q 018519 298 YS 299 (354)
Q Consensus 298 ~~ 299 (354)
++
T Consensus 225 ~~ 226 (233)
T PRK00748 225 EG 226 (233)
T ss_pred cC
Confidence 64
No 113
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.37 E-value=2.2e-06 Score=78.69 Aligned_cols=78 Identities=26% Similarity=0.351 Sum_probs=62.4
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
..+.++.+.+.|++.+++.+-..-+... .+.++.+.++.+.+ ++||++.|||++.+|+.+++.+|||+|++|+.++.
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 4567788999999999874321111122 35688899988876 79999999999999999999999999999999876
Q ss_pred H
Q 018519 299 S 299 (354)
Q Consensus 299 ~ 299 (354)
+
T Consensus 224 ~ 224 (230)
T TIGR00007 224 G 224 (230)
T ss_pred C
Confidence 3
No 114
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.4e-06 Score=81.34 Aligned_cols=202 Identities=19% Similarity=0.213 Sum_probs=132.9
Q ss_pred eeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC--CCHHHHHh---------------------hCC---
Q 018519 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAS---------------------TGP--- 122 (354)
Q Consensus 69 ~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~--~~~eei~~---------------------~~~--- 122 (354)
.+..-+++|||--. |+++++-.|-++|..++.+.... .-+|-+.. .+|
T Consensus 8 ~y~nk~iLApMvr~------G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~ 81 (477)
T KOG2334|consen 8 FYRNKLILAPMVRA------GELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAEN 81 (477)
T ss_pred hhcCcEeeehHHHh------ccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhc
Confidence 35677899999322 47799999999999988876421 01111100 012
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
....||+- ..+++.-.+..+.+ +.....|++|++||- .|++-.|++.+.+.+.. ....-+..
T Consensus 82 ~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK----------~fSi~~gmgaalLt~~d------kl~~IL~s 143 (477)
T KOG2334|consen 82 SRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPK----------EFSIHGGMGAALLTDPD------KLVAILYS 143 (477)
T ss_pred CeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCC----------ccccccCCCchhhcCHH------HHHHHHHH
Confidence 34678874 45666554444333 335677999999995 46666676666554321 01111344
Q ss_pred HHhhhcCCccccc------ccCCHHHHHHHHHhCCCEEEEecCCcCC--CCCCcChHHHHHHHHHHhcCCccEEEcCCCC
Q 018519 203 YVAGQIDRSLSWK------GVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 274 (354)
Q Consensus 203 ~~~~~~~~~~~w~------Gi~~~~~a~~~~~~G~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~ 274 (354)
+++....| ++.+ ---+.+..++....|+.+|.| |+++. -..-+++.+.+.++.+.+. .||||++||.+
T Consensus 144 Lvk~~~vp-vtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i~~~~~-~V~vi~ng~~~ 219 (477)
T KOG2334|consen 144 LVKGNKVP-VTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREIAQACQ-MVPVIVNGGSM 219 (477)
T ss_pred HHhcCccc-ceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHHHHHhc-cceEeeccchh
Confidence 44444333 2222 012677788899999999999 66542 2235778889999999884 39999999999
Q ss_pred C---HHHHHHHHH-cCcCEEEEcHHHHH
Q 018519 275 R---GTDVFKALA-LGASGIFIGRPVVY 298 (354)
Q Consensus 275 ~---g~dv~kala-lGAd~V~igr~~l~ 298 (354)
+ +.|+.+.-. .|++.||+.|...+
T Consensus 220 ~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 220 DIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred hHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 9 999998887 79999999996554
No 115
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.36 E-value=2.5e-06 Score=78.93 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
++...+.++.+.+.|++.|.+.+.-.... ...+.++.+.++.+.+ ++||++.|||++.+|+.+.+.+||++|++|+.
T Consensus 148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~-~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 148 GYTPVEAAKRFEELGAGSILFTNVDVEGL-LEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCCC-cCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 33457888999999999999955311111 1346788899998877 79999999999999999998899999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
++.
T Consensus 225 ~~~ 227 (241)
T PRK13585 225 LYK 227 (241)
T ss_pred Hhc
Confidence 865
No 116
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.35 E-value=2.6e-06 Score=79.66 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 295 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~ 295 (354)
....+.++.+.++|+|.|.+++-.. +.....+.++.+.++++.+ ++|||++|||++.+|+.+++..| ||+|++|+.
T Consensus 155 ~~~~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a 231 (254)
T TIGR00735 155 LDAVEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASV 231 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHH
Confidence 3456778899999999999954211 1122346688888988876 79999999999999999999988 999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
+.+
T Consensus 232 ~~~ 234 (254)
T TIGR00735 232 FHY 234 (254)
T ss_pred HhC
Confidence 765
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.34 E-value=2e-05 Score=70.47 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=92.5
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCcccccc------C---CccC-cCcccc
Q 018519 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ------G---LDLG-KMDEAN 196 (354)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~------~---~~~~-~~~~~~ 196 (354)
+-++...+++...+.++.+.+.|++.+.+++..+..-.-.+.++..+. ...++..++. . .... ......
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~ 85 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPGL 85 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC
Confidence 334445667777777777777788888887766532111122222221 0000100110 0 0000 000011
Q ss_pred hhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCH
Q 018519 197 DSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 276 (354)
Q Consensus 197 ~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g 276 (354)
...+.+..+... ...+-|+.+++++.++.++|+|.|-+... .+...+.+..+++..+ .+|+++.||| +.
T Consensus 86 ~~~~~~~~~~~~--~~~i~gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a~GGI-~~ 154 (190)
T cd00452 86 DPEVVKAANRAG--IPLLPGVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMPTGGV-SL 154 (190)
T ss_pred CHHHHHHHHHcC--CcEECCcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEEeCCC-CH
Confidence 122333332221 12233889999999999999999998431 1223456666655442 5999999999 99
Q ss_pred HHHHHHHHcCcCEEEEcHHHH
Q 018519 277 TDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 277 ~dv~kalalGAd~V~igr~~l 297 (354)
+.+.+.+..||++|.+++.+.
T Consensus 155 ~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 155 DNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHCCCEEEEEchhcc
Confidence 999999999999999999765
No 118
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.34 E-value=1.6e-06 Score=92.58 Aligned_cols=112 Identities=28% Similarity=0.316 Sum_probs=88.3
Q ss_pred HHHHhCCCEEEEecC-CcCCC------CCCcChHH-HHHHHHHHh-----cCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 225 IAVQAGAAGIIVSNH-GARQL------DYVPATIM-ALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 225 ~~~~~G~d~I~vs~~-gg~~~------~~~~~~~~-~l~~i~~~~-----~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
-..++.||.|.|||| ||+.. ...--+|+ -|.|..+.+ ++++-+-.||+++||.||+-|-+|||+-..
T Consensus 1117 GVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefg 1196 (2142)
T KOG0399|consen 1117 GVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFG 1196 (2142)
T ss_pred ccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhc
Confidence 346778999999999 66531 11223344 366665543 468889999999999999999999999999
Q ss_pred EcHHHHHHHhhc--------------------------C-HHHHHHHHHHHHHHHHHHHHHhCCCChhhhcc
Q 018519 292 IGRPVVYSLAAE--------------------------G-EKGVRRVLEMLREEFELAMALSGCRSLKEITR 336 (354)
Q Consensus 292 igr~~l~~~~~~--------------------------G-~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~ 336 (354)
+++.-|.+++|- | ++.|.+++-.+.+|++.+|..+|+++++|+-+
T Consensus 1197 f~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvG 1268 (2142)
T KOG0399|consen 1197 FSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVG 1268 (2142)
T ss_pred ccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhc
Confidence 999777777541 3 35688999999999999999999999999954
No 119
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.33 E-value=7.4e-05 Score=70.04 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHhCCCEEEE-ecCCcCCC--CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIV-SNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~v-s~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.+..+...+..-.+|.+ |-.|-+.. ...+...+.+.++++.. +.||++.|||+|++++.++...|||+|.+|+
T Consensus 151 T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 151 ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 4566666666554446655 32232211 12344566777777765 6799999999999999999999999999999
Q ss_pred HHHHHHh
Q 018519 295 PVVYSLA 301 (354)
Q Consensus 295 ~~l~~~~ 301 (354)
.++..+.
T Consensus 229 aiv~~~~ 235 (256)
T TIGR00262 229 AIVKIIE 235 (256)
T ss_pred HHHHHHH
Confidence 9876553
No 120
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.33 E-value=5.2e-06 Score=74.84 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=69.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC-CC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.+.+++.++.+.|+|+|.++.-..++ .. ..+..++.+.++.+.+ ++||++.||| +..++.+++.+||++|.++
T Consensus 101 s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~~~~~~~~~Ga~gvav~ 177 (201)
T PRK07695 101 SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPENTRDVLAAGVSGIAVM 177 (201)
T ss_pred eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEE
Confidence 3578899999999999999764322221 11 1233567788887766 7999999999 9999999999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 294 RPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 294 r~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
+.+..+ +.+...+..+.+.++
T Consensus 178 s~i~~~------~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 178 SGIFSS------ANPYSKAKRYAESIK 198 (201)
T ss_pred HHHhcC------CCHHHHHHHHHHHHh
Confidence 988752 223344555555444
No 121
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.20 E-value=8.1e-06 Score=74.24 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=103.1
Q ss_pred eEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC---C---CHHHHHhhCCCceEEEEeec----C
Q 018519 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST---S---SVEEVASTGPGIRFFQLYVY----K 133 (354)
Q Consensus 64 ~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~---~---~~eei~~~~~~~~~~QLy~~----~ 133 (354)
+|.|++|...+++.-=-+.+ ...+.++....|+-++.-...- . ..+.+.+.-+ ..-+.+.++ .
T Consensus 1 ki~g~~f~SRL~lGTgky~s------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~-~~~~~lLPNTaGc~ 73 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYPS------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYID-RSGYTLLPNTAGCR 73 (247)
T ss_dssp -ETTEEES-SEEEE-STSSS------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTT-CCTSEEEEE-TT-S
T ss_pred CcCCEEeecceEEecCCCCC------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhc-ccCCEECCcCCCCC
Confidence 47889999999886422211 3367778888888766533311 1 1233333222 011222332 2
Q ss_pred ChHHHHHHHHHHHHc-CCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcc
Q 018519 134 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (354)
Q Consensus 134 d~~~~~~~~~~a~~~-G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (354)
+.+.-....+.+.++ |-+.|-+.|=... .+-+|.. + ...+.-+.+++. ...++
T Consensus 74 tA~EAv~~A~laRe~~~t~wIKLEVi~D~----------~~L~PD~-----~----------etl~Aae~Lv~e-GF~Vl 127 (247)
T PF05690_consen 74 TAEEAVRTARLAREAFGTNWIKLEVIGDD----------KTLLPDP-----I----------ETLKAAEILVKE-GFVVL 127 (247)
T ss_dssp SHHHHHHHHHHHHHTTS-SEEEE--BS-T----------TT--B-H-----H----------HHHHHHHHHHHT-T-EEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCC----------CCcCCCh-----h----------HHHHHHHHHHHC-CCEEe
Confidence 333334445566666 5666666542110 0111110 0 011111222322 11122
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEecCC-cCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
-+-. -++-.+++++++|+.+|---+.. |+ .-|..+...|..|.+.. ++|||+|+||.++.|+..|+.+|||+|+
T Consensus 128 PY~~-~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVL 202 (247)
T PF05690_consen 128 PYCT-DDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVL 202 (247)
T ss_dssp EEE--S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEE
T ss_pred ecCC-CCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceee
Confidence 2211 47889999999999999874431 11 12667778888888888 8999999999999999999999999999
Q ss_pred EcHHHH
Q 018519 292 IGRPVV 297 (354)
Q Consensus 292 igr~~l 297 (354)
+-+++.
T Consensus 203 vNTAiA 208 (247)
T PF05690_consen 203 VNTAIA 208 (247)
T ss_dssp ESHHHH
T ss_pred hhhHHh
Confidence 999764
No 122
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.19 E-value=0.0002 Score=67.23 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-C--cCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-G--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.+.++...+..-++|.+-.. | |.+........+.+.++++.. ++||++-+||++++|+.+++.. ||+|.+|+
T Consensus 153 t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 153 TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 4567788888888888876322 2 221111223345777887765 7999999999999999998876 99999999
Q ss_pred HHHHHHh
Q 018519 295 PVVYSLA 301 (354)
Q Consensus 295 ~~l~~~~ 301 (354)
.++..+.
T Consensus 230 aiv~~~~ 236 (258)
T PRK13111 230 ALVKIIE 236 (258)
T ss_pred HHHHHHH
Confidence 9987654
No 123
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.18 E-value=1.1e-05 Score=75.46 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+.+.+.|++.|.|.+-.+.+ ......++.+.++++.+ ++||+++|||+|.+|+.+++..||+.|++|+.++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l 107 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 45678888999999999996543321 23467788999998887 7999999999999999999999999999999776
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 108 ~ 108 (253)
T PRK02083 108 A 108 (253)
T ss_pred h
Confidence 4
No 124
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.17 E-value=1.7e-05 Score=73.47 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.++.+.++|+|.|.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 345788899999999998865432 1123456788888998877 7999999999999999999999999999999776
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 105 ~ 105 (243)
T cd04731 105 E 105 (243)
T ss_pred h
Confidence 3
No 125
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=0.00013 Score=66.83 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=98.8
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccC--CCC-cCccccccCCcc----------CcC
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPP-FLTLKNFQGLDL----------GKM 192 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~--~p~-~~~~~~~~~~~~----------~~~ 192 (354)
.+-++...|.+...+.++.+.+.|.+.+.||+.+|..-...+.++..+. .|. -++...+.+..+ ..+
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 3444556788998899999999999999999999875443444432221 121 111111111000 000
Q ss_pred cccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCC
Q 018519 193 DEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 272 (354)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG 272 (354)
.+....++.++..+.. ...+-|++++.++..+.++|++.|.+.-.+ ..| ...+..++.-++ .++++.+||
T Consensus 97 sP~~~~~v~~~~~~~~--i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G---~~~ikal~~p~p-~i~~~ptGG 166 (222)
T PRK07114 97 TPLFNPDIAKVCNRRK--VPYSPGCGSLSEIGYAEELGCEIVKLFPGS----VYG---PGFVKAIKGPMP-WTKIMPTGG 166 (222)
T ss_pred CCCCCHHHHHHHHHcC--CCEeCCCCCHHHHHHHHHCCCCEEEECccc----ccC---HHHHHHHhccCC-CCeEEeCCC
Confidence 0000111222221111 112229999999999999999999995422 123 334444444443 799999999
Q ss_pred CCC-HHHHHHHHHcCcCEEEEcHHHH
Q 018519 273 VRR-GTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 273 i~~-g~dv~kalalGAd~V~igr~~l 297 (354)
|.- ..++...++.|+.+|++|+.+.
T Consensus 167 V~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 167 VEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCcchhcHHHHHhCCCEEEEEChhhc
Confidence 985 5899999999999999998654
No 126
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.15 E-value=6.6e-05 Score=67.84 Aligned_cols=161 Identities=13% Similarity=0.084 Sum_probs=99.4
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCcc----------CcCccc
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----------GKMDEA 195 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~----------~~~~~~ 195 (354)
.+-+....+.+...+.++.+.+.|.+.+.+|+++|..-.-.+.++..+. ..-++..++..... ..+.+.
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 4445556788888889999999999999999999864333344444432 01111111111000 000001
Q ss_pred chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCC
Q 018519 196 NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 275 (354)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~ 275 (354)
...++.+...+...+ .+-|++++.++..|.++|+|.|.+.-.+ ..+|+ ..+..++.-+ .+++++.+|||.-
T Consensus 89 ~~~~v~~~~~~~~i~--~iPG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~---~yikal~~pl-p~i~~~ptGGV~~ 159 (204)
T TIGR01182 89 LTPELAKHAQDHGIP--IIPGVATPSEIMLALELGITALKLFPAE---VSGGV---KMLKALAGPF-PQVRFCPTGGINL 159 (204)
T ss_pred CCHHHHHHHHHcCCc--EECCCCCHHHHHHHHHCCCCEEEECCch---hcCCH---HHHHHHhccC-CCCcEEecCCCCH
Confidence 111222222221111 1229999999999999999999995422 11223 3344444444 3799999999975
Q ss_pred HHHHHHHHHcCcCEEEEcHHHH
Q 018519 276 GTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 276 g~dv~kalalGAd~V~igr~~l 297 (354)
..+...|+.|+.+|++|+.+.
T Consensus 160 -~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 160 -ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred -HHHHHHHhCCCEEEEEChhhc
Confidence 899999999999999998665
No 127
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.12 E-value=1.7e-05 Score=74.26 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=64.0
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
..+.|+.+.+.|+|.+.+.+.-+- .......++.+.++++.+ ++||+++|||+|.+|+.+++.+||+.|.+|+.++.
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 457788889999999999765321 123456788899998887 79999999999999999999999999999997753
No 128
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.11 E-value=2.9e-05 Score=70.10 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHhCCCEEEEecC--CcCC-CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNH--GARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~--gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.+++..+.+.|+|.|.++.- ++.. ....+..++.+.++++..+ ++||++.||| +.+++.+++++||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 35788999999999999998532 1111 1111223788888887762 4999999999 7899999999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 294 RPVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 294 r~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
+.+.. .+...+.++.+++.+
T Consensus 189 s~i~~------~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 189 SAITG------AEDPEAAARALLAAF 208 (212)
T ss_pred HHhhc------CCCHHHHHHHHHHHH
Confidence 97542 122444555555443
No 129
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.06 E-value=0.0005 Score=64.65 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHhCCCEEEE-ecCCcCCC-CCCcC-hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIV-SNHGARQL-DYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~v-s~~gg~~~-~~~~~-~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.+..+...+..-.+|.+ |..|-+.. ..-+. ..+.+.++++.. +.||.+.+||++++++.+....|||+|.+|+
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 3566666666665557775 54432211 11112 234455555544 8999999999999999999999999999999
Q ss_pred HHHHHHh
Q 018519 295 PVVYSLA 301 (354)
Q Consensus 295 ~~l~~~~ 301 (354)
.++..+.
T Consensus 233 alv~~i~ 239 (263)
T CHL00200 233 ACVQILL 239 (263)
T ss_pred HHHHHHH
Confidence 9986543
No 130
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.05 E-value=0.00017 Score=64.43 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=60.3
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
-|+.+++++.++.+.|+|.|-+.-. ......+.+..++..++ ++|+++.||| +.+++...++.||++|.+++
T Consensus 110 ~G~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s 181 (187)
T PRK07455 110 PGALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIPTGGV-TLENAQAFIQAGAIAVGLSG 181 (187)
T ss_pred cCcCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEEeCCC-CHHHHHHHHHCCCeEEEEeh
Confidence 3789999999999999999998221 11223566777776652 6999999999 78999999999999999998
Q ss_pred HHH
Q 018519 295 PVV 297 (354)
Q Consensus 295 ~~l 297 (354)
.++
T Consensus 182 ~i~ 184 (187)
T PRK07455 182 QLF 184 (187)
T ss_pred hcc
Confidence 654
No 131
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.02 E-value=0.0003 Score=63.41 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
..++++.+.+.|+|.|.+.. |......++..++.+.++++.++ .+++.++||| +.+.+.+.+..|||+|.+||.++
T Consensus 115 ~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 115 KVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred hHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 45888999999999998842 21111234455667777777663 4677779999 78889899999999999999854
No 132
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.02 E-value=6.4e-05 Score=70.19 Aligned_cols=150 Identities=21% Similarity=0.288 Sum_probs=88.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhh---hccCCCCcCccccccCCccCc---------Ccc-------c-chh
Q 018519 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIK---NRFTLPPFLTLKNFQGLDLGK---------MDE-------A-NDS 198 (354)
Q Consensus 139 ~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r---~~~~~p~~~~~~~~~~~~~~~---------~~~-------~-~~~ 198 (354)
.++++..++.|+.+|-+..|....+-...+++ ..+.+|- .-+++-..+ ..+ - ...
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv-----L~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV-----LRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E-----EEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc-----ccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 45566778899999999999887766555544 2233331 001110000 000 0 000
Q ss_pred hHHHHHhhhcCCccccc---ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCC
Q 018519 199 GLAAYVAGQIDRSLSWK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 275 (354)
Q Consensus 199 ~~~~~~~~~~~~~~~w~---Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~ 275 (354)
.+.++.+... .++.+ -|.+.++++++.++|++.|-|.|.- +..-...+....++...++.++.+|+.+||.+
T Consensus 146 ~l~~l~~~a~--~lGle~lVEVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~ 220 (254)
T PF00218_consen 146 QLEELLELAH--SLGLEALVEVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKT 220 (254)
T ss_dssp HHHHHHHHHH--HTT-EEEEEESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SS
T ss_pred HHHHHHHHHH--HcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCC
Confidence 1122221110 11211 4679999999999999999997753 33333444555566666666789999999999
Q ss_pred HHHHHHHHHcCcCEEEEcHHHHH
Q 018519 276 GTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 276 g~dv~kalalGAd~V~igr~~l~ 298 (354)
.+|+.+....|+|+|.||+.++.
T Consensus 221 ~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 221 PEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HHHHHHHCTTT-SEEEESHHHHT
T ss_pred HHHHHHHHHCCCCEEEECHHHhC
Confidence 99999999999999999999986
No 133
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.01 E-value=0.00035 Score=64.87 Aligned_cols=166 Identities=22% Similarity=0.177 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCcEE--ecCC--CCCCHHHHHhhC---CCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 91 YATARAASAAGTIMT--LSSW--STSSVEEVASTG---PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 91 ~~la~aa~~~G~~~~--~s~~--~~~~~eei~~~~---~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
..+|+...+.|+..+ +++. -.-+++++.... .-|.. .+|.=.....+..+...|++++.+.+..-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL-----~KDFIid~~QI~ea~~~GADavLLI~~~L~-- 136 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVL-----RKDFILDEIQIREARAFGASAILLIVRILT-- 136 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEE-----eccccCCHHHHHHHHHcCCCEEEeEHhhCC--
Confidence 378899999998543 2221 234677665432 22221 245555556677788899999987653210
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCC
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQ 243 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~ 243 (354)
+ . ....+.+...+..-.+++ -|.+.+++.++.++|++.|-|.|..
T Consensus 137 ------------~-----~-------------~l~~l~~~a~~lGle~LV--EVh~~~El~~a~~~ga~iiGINnRd--- 181 (247)
T PRK13957 137 ------------P-----S-------------QIKSFLKHASSLGMDVLV--EVHTEDEAKLALDCGAEIIGINTRD--- 181 (247)
T ss_pred ------------H-----H-------------HHHHHHHHHHHcCCceEE--EECCHHHHHHHHhCCCCEEEEeCCC---
Confidence 0 0 011122222222212222 4679999999999999999997754
Q ss_pred CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHH
Q 018519 244 LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~ 299 (354)
+..-........++...++.++.+|+.|||.+++|+.+.... +|+|.||+.++.+
T Consensus 182 L~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 182 LDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred CccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 322233344455666777667889999999999999987766 9999999998863
No 134
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.00 E-value=0.00046 Score=63.45 Aligned_cols=81 Identities=28% Similarity=0.440 Sum_probs=66.3
Q ss_pred ccc---ccCCHHHHHHHHHhCCCEEEEecCCcCCCCC--CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc-C
Q 018519 213 SWK---GVLTAEDARIAVQAGAAGIIVSNHGARQLDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-G 286 (354)
Q Consensus 213 ~w~---Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal-G 286 (354)
+|. ++.-.+.+++..+.|+..|+...-. .|+ .-+.++.+.++.+++ ++||+++|||+|-.|+.....+ |
T Consensus 140 GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~---~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G 214 (241)
T COG0106 140 GWQEDSGVELEELAKRLEEVGLAHILYTDIS---RDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSG 214 (241)
T ss_pred cccccccCCHHHHHHHHHhcCCCeEEEEecc---cccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCC
Confidence 565 5556788899999999999985421 122 345678889999988 8999999999999999888889 9
Q ss_pred cCEEEEcHHHHH
Q 018519 287 ASGIFIGRPVVY 298 (354)
Q Consensus 287 Ad~V~igr~~l~ 298 (354)
..+|.+||+++-
T Consensus 215 ~~GvIvG~ALy~ 226 (241)
T COG0106 215 VEGVIVGRALYE 226 (241)
T ss_pred CcEEEEehHHhc
Confidence 999999998774
No 135
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.97 E-value=2.8e-05 Score=71.53 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHhCCCEEEEecCC-cCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
-++-.|++++++|+.+|---+.. |+ .-|..+...|.-|.+.. ++|||.++||.+++|+.+|+.+|||+|++.+.+
T Consensus 146 ~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 146 ADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred CCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 47889999999999999864331 11 12566777787777754 799999999999999999999999999999977
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
..
T Consensus 222 ak 223 (267)
T CHL00162 222 AQ 223 (267)
T ss_pred ec
Confidence 64
No 136
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00017 Score=65.49 Aligned_cols=164 Identities=19% Similarity=0.221 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCcEEecCCCCCCHHHHHhhC--C-CceEEEEeecCChHHHHHHHHH-HHHcCCCEEEEecCCCCCCchhH
Q 018519 92 ATARAASAAGTIMTLSSWSTSSVEEVASTG--P-GIRFFQLYVYKDRNVVAQLVRR-AERAGFKAIALTVDTPRLGRREA 167 (354)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~--~-~~~~~QLy~~~d~~~~~~~~~~-a~~~G~~ai~i~vd~p~~g~r~~ 167 (354)
-..+.|++.-+|++++.. ..++|++.+.. . ....++--.-.|++. +.+ +...|...+++.+|+-- ..
T Consensus 65 vv~r~A~~vfiPltVGGG-I~s~eD~~~ll~aGADKVSINsaAv~~p~l----I~~~a~~FGsQciVvaIDakr----~~ 135 (256)
T COG0107 65 VVERVAEQVFIPLTVGGG-IRSVEDARKLLRAGADKVSINSAAVKDPEL----ITEAADRFGSQCIVVAIDAKR----VP 135 (256)
T ss_pred HHHHHHhhceeeeEecCC-cCCHHHHHHHHHcCCCeeeeChhHhcChHH----HHHHHHHhCCceEEEEEEeee----cc
Confidence 577888889999999864 46788776531 1 233332212245554 444 45569999999999742 10
Q ss_pred HhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEec--CCcCCCC
Q 018519 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSN--HGARQLD 245 (354)
Q Consensus 168 ~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~--~gg~~~~ 245 (354)
++. +.. ...+. ....... |+...+=|+++++.||--|.+.. +=|++
T Consensus 136 ---~g~--~~~--~~v~~--------------------~gGr~~t---~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk-- 183 (256)
T COG0107 136 ---DGE--NGW--YEVFT--------------------HGGREDT---GLDAVEWAKEVEELGAGEILLTSMDRDGTK-- 183 (256)
T ss_pred ---CCC--CCc--EEEEe--------------------cCCCcCC---CcCHHHHHHHHHHcCCceEEEeeecccccc--
Confidence 000 000 00000 0001112 34566889999999999998832 11211
Q ss_pred CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHHHH
Q 018519 246 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 299 (354)
Q Consensus 246 ~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l~~ 299 (354)
.--.++.+..+++.+ ++|||+|||..+.+|..+++..| ||++..++-|-|.
T Consensus 184 -~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~ 235 (256)
T COG0107 184 -AGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG 235 (256)
T ss_pred -cCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC
Confidence 112467788888888 89999999999999999999987 9999999888773
No 137
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00027 Score=65.62 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=65.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+.+.+++++|.++|++.|=|.|..=+.+ ...++...++...++.+..+|..+||.+++|+.+....|||++.||+.
T Consensus 162 EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~s 238 (254)
T COG0134 162 EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEA 238 (254)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHH
Confidence 45799999999999999999977643322 333444556666666678899999999999999999999999999999
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
+|.
T Consensus 239 lM~ 241 (254)
T COG0134 239 LMR 241 (254)
T ss_pred Hhc
Confidence 986
No 138
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.93 E-value=6.3e-05 Score=69.11 Aligned_cols=77 Identities=34% Similarity=0.422 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+.+.+.|+|.+.|..--+. .......++.+.++.+.+ .+||++.|||++.+|+.+++..|||.|++|+..+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 3567888888999999999643221 122456688899998877 7999999999999999999999999999999765
No 139
>PLN02591 tryptophan synthase
Probab=97.92 E-value=0.0013 Score=61.34 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-CcCCCCCC-cChH-HHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-GARQLDYV-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-gg~~~~~~-~~~~-~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.+..+...+..-.+|.+-+. |-+..... +..+ +.+.++++.. ++||++--||++++|+.+.+..|||+|.+|+
T Consensus 142 t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 142 TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 3556677777777788876433 32211122 2333 3466776643 8999999999999999999999999999999
Q ss_pred HHHHHH
Q 018519 295 PVVYSL 300 (354)
Q Consensus 295 ~~l~~~ 300 (354)
.++..+
T Consensus 220 alVk~i 225 (250)
T PLN02591 220 AMVKAL 225 (250)
T ss_pred HHHHhh
Confidence 998754
No 140
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.92 E-value=0.00057 Score=61.24 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC-CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+..+++++.++.+.|+|.+.+.- +.. +..+.+...+.+.++.+.. ++||+++|||+ .+++.+++..|||+|.+||
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~~-~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILHR-GIDAQAAGGWWPEDDLKKVKKLL--GVKVAVAGGIT-PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEcC-cccccccCCCCCHHHHHHHHhhc--CCCEEEECCcC-HHHHHHHHhcCCCEEEEee
Confidence 55688899889999999988831 111 1111345566777776643 79999999995 9999999999999999999
Q ss_pred HHH
Q 018519 295 PVV 297 (354)
Q Consensus 295 ~~l 297 (354)
++.
T Consensus 188 ai~ 190 (202)
T cd04726 188 AIT 190 (202)
T ss_pred hhc
Confidence 864
No 141
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.91 E-value=4.2e-05 Score=75.12 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
...+.++.++++|+|.|+++|.-..|.+ .+...+..|.++.+.+ ++|||+ |++.+.+|+.+++.+|||+|++|+
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 4568889999999999999443212333 2334566777777766 799998 999999999999999999999886
No 142
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.90 E-value=0.0011 Score=61.62 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHhCCCEEEEec-CCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSN-HGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~-~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.+..+...+...+.|.+-+ .|++ |....+...+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 467777878876778877633 3333 2212344456777777754 8999999999999999999999 99999999
Q ss_pred HHHHHHh
Q 018519 295 PVVYSLA 301 (354)
Q Consensus 295 ~~l~~~~ 301 (354)
.++.-+.
T Consensus 217 aiv~~~~ 223 (242)
T cd04724 217 ALVKIIE 223 (242)
T ss_pred HHHHHHH
Confidence 8876543
No 143
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.89 E-value=0.00022 Score=65.65 Aligned_cols=65 Identities=31% Similarity=0.562 Sum_probs=51.4
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCC--CCHHH----HHHHHHcCcCEEEEcHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV--RRGTD----VFKALALGASGIFIGRPV 296 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi--~~g~d----v~kalalGAd~V~igr~~ 296 (354)
++.+.++|+|.|-+++.+ .++.+.++.+.+ ++||++.||+ .+.+| +..++.+||++|.+||.+
T Consensus 149 ~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 149 ARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred HHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 455889999999985322 466777887766 7899999998 66766 667788999999999987
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 218 ~~ 219 (235)
T cd00958 218 FQ 219 (235)
T ss_pred hc
Confidence 74
No 144
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.89 E-value=0.0006 Score=68.63 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
.+.++.+.+.|+|.|.+. .|.+....++..++.|.++++.+ ++||++.||| +.+.+.++++.|||+|.+||.++
T Consensus 121 ~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 121 VKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred HHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHc
Confidence 566788899999999774 22211112344567777777765 6999999999 68899999999999999999865
No 145
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.87 E-value=0.00011 Score=64.95 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCC--cC-CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHG--AR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~g--g~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.+++..+.+.|+|.|.++.-. .. +..+.+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|
T Consensus 102 ~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 102 THSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 357889999999999999986431 11 1111455677788877654 79999999995 689999999999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
+.++
T Consensus 179 ~~i~ 182 (196)
T cd00564 179 SAIT 182 (196)
T ss_pred hHhh
Confidence 9865
No 146
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.87 E-value=0.0012 Score=59.50 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=94.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC-cCccccccCCcc----------CcCcc
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDL----------GKMDE 194 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~-~~~~~~~~~~~~----------~~~~~ 194 (354)
.+-+....+.+...+.++.+.+.|.+.+.||++.|..-.-.+.++..+ |. -++...+.+... ..+.+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~~e~a~~ai~aGA~FivSP 83 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILNAKQFEDAAKAGSRFIVSP 83 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 344455678888888999999999999999999986433233344333 21 111111111000 00000
Q ss_pred cchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCC
Q 018519 195 ANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 274 (354)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~ 274 (354)
....++.+...+.. ...+-|++++.++..+.++|++.|.+.-.+ .-+|+ ..+..++.-++ +++++.+|||.
T Consensus 84 ~~~~~vi~~a~~~~--i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~---~yikal~~plp-~~~l~ptGGV~ 154 (201)
T PRK06015 84 GTTQELLAAANDSD--VPLLPGAATPSEVMALREEGYTVLKFFPAE---QAGGA---AFLKALSSPLA-GTFFCPTGGIS 154 (201)
T ss_pred CCCHHHHHHHHHcC--CCEeCCCCCHHHHHHHHHCCCCEEEECCch---hhCCH---HHHHHHHhhCC-CCcEEecCCCC
Confidence 00111222211111 112229999999999999999999995421 11123 34555555453 79999999996
Q ss_pred CHHHHHHHHHcCcCEEEEcHHH
Q 018519 275 RGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 275 ~g~dv~kalalGAd~V~igr~~ 296 (354)
. ..+...|++|+.++..|+.+
T Consensus 155 ~-~n~~~~l~ag~~~~~ggs~l 175 (201)
T PRK06015 155 L-KNARDYLSLPNVVCVGGSWV 175 (201)
T ss_pred H-HHHHHHHhCCCeEEEEchhh
Confidence 5 79999999998877776644
No 147
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.85 E-value=0.0042 Score=58.99 Aligned_cols=109 Identities=19% Similarity=0.277 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHH-hCCCEEEEe--c-CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcC--CCCCHHHHHHHHHcCcCEE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--Gi~~g~dv~kalalGAd~V 290 (354)
..++++|+.+.+ .|+|.+-++ + ||-+ ....+-.++.|.++++.+ ++|+++=| ||. .+++.+++..|++.|
T Consensus 152 ~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~ki 227 (281)
T PRK06806 152 LTSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKI 227 (281)
T ss_pred eCCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 468999999874 599999994 3 4532 222234678899999987 79999999 884 678999999999999
Q ss_pred EEcHHHHHHHhh-------cCH-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLAA-------EGE-----KGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~~-------~G~-----~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
.+.+.+..+... ..+ .-.....+.+++.++..|+.+|..
T Consensus 228 nv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 228 NVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987653211 000 112333455666667777777643
No 148
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.85 E-value=0.00021 Score=65.67 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|+|.+.+..--|. ..+..+.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 3456688888999999998653221 123456788888888876 7999999999999999999999999999999776
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
-
T Consensus 108 ~ 108 (233)
T PRK00748 108 K 108 (233)
T ss_pred h
Confidence 4
No 149
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.83 E-value=0.0015 Score=60.01 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=64.5
Q ss_pred HHHHHHHHHhC-CCEEEEec-CCcCC-CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 220 AEDARIAVQAG-AAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 220 ~~~a~~~~~~G-~d~I~vs~-~gg~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.+.++...+.| +|.|.+.. +.|.. ....+..++.+.++++.. .++||.++||| +.+.+.+.+.+|||.+.+|+++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 55555555554 99996633 33322 123344556677766653 25799999999 7899999999999999999985
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 018519 297 VYSLAAEGEKGVRRVLEMLREEFELAM 323 (354)
Q Consensus 297 l~~~~~~G~~gv~~~l~~l~~el~~~m 323 (354)
.. .+.....++.++++++..|
T Consensus 206 ~~------~~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 206 FG------APDYAEVISGLRASVEKAA 226 (229)
T ss_pred hC------CCCHHHHHHHHHHHHHHhh
Confidence 42 2335556777777766654
No 150
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.79 E-value=8.5e-05 Score=73.08 Aligned_cols=72 Identities=24% Similarity=0.384 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcC-hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
...+.++.++++|+|.|++ ||++ |.+.+.. .+..+.++.+.. ++|||+ |+|.|.+++.+++.+|||+|++|+
T Consensus 142 ~~~e~a~~l~eaGvd~I~v--hgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVI--QGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred CHHHHHHHHHHCCCCEEEE--eccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 3568889999999999999 5543 3443333 456666666665 799999 999999999999999999999996
No 151
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.76 E-value=0.00055 Score=64.53 Aligned_cols=65 Identities=29% Similarity=0.529 Sum_probs=51.2
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCC--CHHHHHHHH----HcCcCEEEEcHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKAL----ALGASGIFIGRPV 296 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~--~g~dv~kal----alGAd~V~igr~~ 296 (354)
++.+.+.|+|+|..+-+| ..+.+.++.+.. ++||+++|||+ |.+++++.+ .+||+++.+||.+
T Consensus 166 ~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i 234 (267)
T PRK07226 166 ARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNV 234 (267)
T ss_pred HHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhh
Confidence 577889999999875221 356677766654 79999999999 777777665 8999999999987
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 235 ~~ 236 (267)
T PRK07226 235 FQ 236 (267)
T ss_pred hc
Confidence 64
No 152
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.75 E-value=0.00014 Score=66.76 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=54.6
Q ss_pred HHHHHHHhCCCEEEEecCC--cCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 222 DARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
....+.+.|+ ++++..-. |+ ...+.++.+.++.+.+ ++|||++|||+|.+|+.+...+|||+|.+|+++..
T Consensus 146 ~~~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 146 VRDFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 3445567888 66653211 22 2245688888888876 79999999999999999988899999999998865
No 153
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.74 E-value=0.00036 Score=63.07 Aligned_cols=65 Identities=32% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
++.+.++|+|+|..+ .|- ....++.+.+..+.+.++.++||-++|||++.+++++.+.+||+.++
T Consensus 137 ~ria~e~GaD~IKTs-TG~---~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 137 CEIAIEAGADFIKTS-TGF---GPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred HHHHHHhCCCEEEcC-CCC---CCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 467899999999986 221 12345555555555655568999999999999999999999998764
No 154
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.73 E-value=0.00066 Score=71.79 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-|.+.++++++.++|++.|-|.|.- +..-..++....++...++.++.+|+.+||.+++|+.++..+|||+|.||+.
T Consensus 166 Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGes 242 (695)
T PRK13802 166 ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEG 242 (695)
T ss_pred EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHH
Confidence 4679999999999999999887753 3333333455556666666678899999999999999999999999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
++.
T Consensus 243 lm~ 245 (695)
T PRK13802 243 VAT 245 (695)
T ss_pred hhC
Confidence 864
No 155
>PRK06801 hypothetical protein; Provisional
Probab=97.71 E-value=0.0095 Score=56.73 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCHHHHHHHH-HhCCCEEEEecCCcCCCCCC--cChHHHHHHHHHHhcCCccEEEcCC--CCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~-~~G~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~GG--i~~g~dv~kalalGAd~V~i 292 (354)
..+++|+++. +.|+|.+-++-.--+..+.+ ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|-+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 5789999888 89999999943111112223 35788899998887 799999999 75 57888999999999999
Q ss_pred cHHHHHHHhh-------cCH-------HHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 293 GRPVVYSLAA-------EGE-------KGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 293 gr~~l~~~~~-------~G~-------~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
++.+..+... ... .-.....+.+++.++..|+.+|..
T Consensus 233 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 233 YTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654321 110 112333456667777777777643
No 156
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.70 E-value=0.00027 Score=65.33 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=61.7
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
++...+-++.+.+.|+..|++..- -|+ ..-+.++.+.++.+.. ++||+++|||++.+|+.+++.+|+++|.+|
T Consensus 147 ~~~~~~~~~~~~~~g~~~ii~tdi~~dGt---~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 147 ELNLFSFVRQLSDIPLGGIIYTDIAKDGK---MSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccCcCC---CCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 334467778889999999887432 222 1245677888888765 799999999999999999999999999999
Q ss_pred HHHHH
Q 018519 294 RPVVY 298 (354)
Q Consensus 294 r~~l~ 298 (354)
+.+.-
T Consensus 222 ~a~~~ 226 (234)
T PRK13587 222 KAAHQ 226 (234)
T ss_pred HHHHh
Confidence 98764
No 157
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.69 E-value=0.00034 Score=62.50 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCC-C--CcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.+.+.+++.++.+.|+|.|.++.-.-+... . .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 467889999999999999998653322111 1 2235677777776543 5999999999 589999999999999999
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|+.+.
T Consensus 180 ~~~i~ 184 (196)
T TIGR00693 180 VSAIM 184 (196)
T ss_pred hHHhh
Confidence 99876
No 158
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.67 E-value=0.00022 Score=65.38 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=55.2
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
++.+.++|+|+|..|. | +..+..+.+.+..+++.++++++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 142 ~~~~~~agadfIKTsT-G---~~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 142 CEIAKEAGADFVKTST-G---FSTGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred HHHHHHhCCCEEEcCC-C---CCCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 3467899999887643 2 2234467777888888887789999999999999999999999999877653
No 159
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.66 E-value=0.003 Score=62.58 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=86.2
Q ss_pred HHHHHhhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcC
Q 018519 114 VEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (354)
Q Consensus 114 ~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~ 192 (354)
++++++..+ .+...-|.. .|.+.+. ++.+.++|++.+.+|.-.+..
T Consensus 217 Vk~Lr~~~~~~~I~~DLK~-~Di~~~v--v~~~a~aGAD~vTVH~ea~~~------------------------------ 263 (391)
T PRK13307 217 ISKIREVRPDAFIVADLKT-LDTGNLE--ARMAADATADAVVISGLAPIS------------------------------ 263 (391)
T ss_pred HHHHHHhCCCCeEEEEecc-cChhhHH--HHHHHhcCCCEEEEeccCCHH------------------------------
Confidence 456666544 356666654 5666553 667889999999988643210
Q ss_pred cccchhhHHHHHhhhcCC-cccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcC
Q 018519 193 DEANDSGLAAYVAGQIDR-SLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 271 (354)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~-~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 271 (354)
......+..++.... .+.--+..++.+..+....++|.|.+ |-+.......+.++-+.++++. ..+++|.++|
T Consensus 264 ---ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vll--ht~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdG 337 (391)
T PRK13307 264 ---TIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVEL--HRGIDEEGTEHAWGNIKEIKKA-GGKILVAVAG 337 (391)
T ss_pred ---HHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEE--ccccCCCcccchHHHHHHHHHh-CCCCcEEEEC
Confidence 000111111111111 11011223343343434889999998 4322111335567777777765 3478999999
Q ss_pred CCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 272 GVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 272 Gi~~g~dv~kalalGAd~V~igr~~l 297 (354)
||. .+++-+++.+|||.+.+||.+.
T Consensus 338 GI~-~eti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 338 GVR-VENVEEALKAGADILVVGRAIT 362 (391)
T ss_pred CcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 999 7788888899999999999843
No 160
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00022 Score=64.71 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
-++-.|++++++|+.+|-=-+. -|+ .-|+-+...|.-|.+.. ++|||+|-||.++.|+..++.+|+|+|++-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 4677899999999999863221 011 12566677788888877 899999999999999999999999999999976
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 43
No 161
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.63 E-value=0.00053 Score=63.67 Aligned_cols=77 Identities=26% Similarity=0.216 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|+|.|.+-.--+- .+.....+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l 108 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAAL 108 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHh
Confidence 3557788888999998877432111 13345678899999887 7999999999999999999999999999999765
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 109 ~ 109 (241)
T PRK14024 109 E 109 (241)
T ss_pred C
Confidence 3
No 162
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.63 E-value=0.001 Score=67.14 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-|.+.++++++.++|++.|-|.|.- +..-.-....-.++...++.++.+|+.+||.|++|+.++ ..|||+|.||+.
T Consensus 165 Evh~~~El~~al~~~a~iiGiNnRd---L~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~ 240 (454)
T PRK09427 165 EVSNEEELERAIALGAKVIGINNRN---LRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSS 240 (454)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCC---CccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHH
Confidence 4679999999999999999987754 322223344445566666667889999999999999885 458999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 018519 296 VVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 335 (354)
Q Consensus 296 ~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 335 (354)
+|.+ +...+.++.+.. .....||.++..++.
T Consensus 241 lm~~------~d~~~~~~~L~~---~~vKICGit~~eda~ 271 (454)
T PRK09427 241 LMAE------DDLELAVRKLIL---GENKVCGLTRPQDAK 271 (454)
T ss_pred HcCC------CCHHHHHHHHhc---cccccCCCCCHHHHH
Confidence 8863 222333333322 345678988887775
No 163
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.62 E-value=0.019 Score=54.92 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHhCCCEEEEe--c-CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCC--CCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GG--i~~g~dv~kalalGAd~V~i 292 (354)
.++++|..+.+.|+|.+-++ + ||-+.-..-.-.++.|.+|++.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 69999999999999999998 3 665421112356788999998872 499999999 74 57788999999999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 164
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.61 E-value=0.0033 Score=56.52 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+..+..+....++|.|.+... |++.....+..++.+.++++.++. .+|++++|||+ .+.+.+++..|||.+.+|
T Consensus 115 t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivg 193 (210)
T TIGR01163 115 TPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAG 193 (210)
T ss_pred CCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 344444555668999876442 222112234445556666655431 37899999996 699989899999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
|++.
T Consensus 194 sai~ 197 (210)
T TIGR01163 194 SAIF 197 (210)
T ss_pred hHHh
Confidence 9875
No 165
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.61 E-value=0.00033 Score=64.55 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=59.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
++...+.++++.+.|+..|++..=.. .....-+.++.+.++++.. ++|||++|||++.+|+.++...|+++|.+|++
T Consensus 146 ~~~~~~~~~~~~~~g~~~ii~tdi~~-dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvivg~a 222 (229)
T PF00977_consen 146 GIDLEEFAKRLEELGAGEIILTDIDR-DGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIVGSA 222 (229)
T ss_dssp EEEHHHHHHHHHHTT-SEEEEEETTT-TTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEESHH
T ss_pred CcCHHHHHHHHHhcCCcEEEEeeccc-cCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEEehH
Confidence 44566778899999999999854211 0011235568888888887 89999999999999999999999999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
+..
T Consensus 223 l~~ 225 (229)
T PF00977_consen 223 LHE 225 (229)
T ss_dssp HHT
T ss_pred hhC
Confidence 854
No 166
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.61 E-value=0.00066 Score=61.78 Aligned_cols=68 Identities=26% Similarity=0.237 Sum_probs=52.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
++.+.++|+|+|..|..- ..+..+.+.+..+++.++++++|-++|||++.+|+++.+.+||+.++..+
T Consensus 138 ~~ia~eaGADfvKTsTGf----~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 138 CEICIDAGADFVKTSTGF----GAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred HHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 356789999999986421 12345666666667777678999999999999999999999999876543
No 167
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.59 E-value=0.0074 Score=54.97 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=96.0
Q ss_pred HHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCccc
Q 018519 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (354)
Q Consensus 116 ei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (354)
++++..+++..+|++. .|.+.+.+..+...+.+ ..+.+-+ |.. ..+
T Consensus 45 ~i~~~~~~~v~~qv~~-~~~e~~i~~a~~l~~~~-~~~~iKI--P~T-------------~~g----------------- 90 (211)
T cd00956 45 EICEIIDGPVSAQVVS-TDAEGMVAEARKLASLG-GNVVVKI--PVT-------------EDG----------------- 90 (211)
T ss_pred HHHHhcCCCEEEEEEe-CCHHHHHHHHHHHHHhC-CCEEEEE--cCc-------------HhH-----------------
Confidence 4444445678999974 67777766666665542 2334333 321 000
Q ss_pred chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcC---CccEEEcCC
Q 018519 196 NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGG 272 (354)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GG 272 (354)
...++.+.+. .-.+....|.+.+.|..+.++|++.| +-+-||--++|...+..+.++.+.+.. +..|++ .|
T Consensus 91 -l~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As 164 (211)
T cd00956 91 -LKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-AS 164 (211)
T ss_pred -HHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cc
Confidence 1112233222 12233346889999999999999995 447666556677778888887776532 344555 45
Q ss_pred CCCHHHHHHHHHcCcCEEEEcHHHHHHHhh
Q 018519 273 VRRGTDVFKALALGASGIFIGRPVVYSLAA 302 (354)
Q Consensus 273 i~~g~dv~kalalGAd~V~igr~~l~~~~~ 302 (354)
+++..++..++.+|||.|-+.-.++..+..
T Consensus 165 ~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 165 IRNPQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred cCCHHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 999999999999999999999888876653
No 168
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.58 E-value=0.015 Score=55.33 Aligned_cols=109 Identities=25% Similarity=0.342 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHH-hCCCEEEEe-c--CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcC--CCCCHHHHHHHHHcCcCEE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVS-N--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs-~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G--Gi~~g~dv~kalalGAd~V 290 (354)
..++|+|..+.+ .|+|.+.++ | ||-+. ....-.++.|.+|++.+ ++|+++=| ||. .+++.+++.+|++.|
T Consensus 152 ~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEE
Confidence 469999999997 999999975 2 44221 12334578899999888 79999999 885 567889999999999
Q ss_pred EEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+++-+..+... .. ..-.....+.+++.+++.|+.+|..
T Consensus 228 Nv~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 228 NIDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred EECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554321 00 1223345567778888888888753
No 169
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.58 E-value=0.00068 Score=66.14 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC-CC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.+.+++..|.+.|+|.|.++.-..+. .. ..+..++.+..+.+.. ++||++-|||. ..++.+.+++||++|.++
T Consensus 246 S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvi 322 (347)
T PRK02615 246 STTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAKRVAVV 322 (347)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999986544332 11 1344577777777655 79999999995 889999999999999999
Q ss_pred HHHHH
Q 018519 294 RPVVY 298 (354)
Q Consensus 294 r~~l~ 298 (354)
+.++-
T Consensus 323 saI~~ 327 (347)
T PRK02615 323 RAIMG 327 (347)
T ss_pred HHHhC
Confidence 98763
No 170
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0027 Score=57.35 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=93.8
Q ss_pred cCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCcc----------CcCcccchhhHH
Q 018519 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL----------GKMDEANDSGLA 201 (354)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~----------~~~~~~~~~~~~ 201 (354)
..+.+....+++.+.+.|.++|.||+.+|....-.+.++..+. ..-++...+-+..+ -.+......++.
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~ 99 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVA 99 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 4788888888898999999999999999987665556655542 11111111111000 000001111222
Q ss_pred HHHhhhcCCccccc-ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHH
Q 018519 202 AYVAGQIDRSLSWK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 280 (354)
Q Consensus 202 ~~~~~~~~~~~~w~-Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ 280 (354)
+..... .+.+- |++++-++..|.++|++.+.+.-... .+|+.- +..+.- .-.+++++-.|||.- ..+.
T Consensus 100 ~~a~~~---~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~---~ka~~g-P~~~v~~~pTGGVs~-~N~~ 168 (211)
T COG0800 100 KAANRY---GIPYIPGVATPTEIMAALELGASALKFFPAEV---VGGPAM---LKALAG-PFPQVRFCPTGGVSL-DNAA 168 (211)
T ss_pred HHHHhC---CCcccCCCCCHHHHHHHHHcChhheeecCccc---cCcHHH---HHHHcC-CCCCCeEeecCCCCH-HHHH
Confidence 222211 12222 89999999999999999999854311 122222 222111 113689999999965 4999
Q ss_pred HHHHcCcCEEEEcHHHH
Q 018519 281 KALALGASGIFIGRPVV 297 (354)
Q Consensus 281 kalalGAd~V~igr~~l 297 (354)
.++++|+.+|++|+-+.
T Consensus 169 ~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 169 DYLAAGVVAVGLGSWLV 185 (211)
T ss_pred HHHhCCceEEecCcccc
Confidence 99999999998887433
No 171
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.57 E-value=0.0003 Score=67.38 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.++..++++.++|+-+|---+. =|+ ..|....+.|..+.+.. ++||+.++||.++.|+.+|+.+|||+|++.+.+
T Consensus 206 ~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 206 DDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred CCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEccee
Confidence 5899999999999955443111 011 12455777888888875 799999999999999999999999999999976
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 282 a 282 (326)
T PRK11840 282 A 282 (326)
T ss_pred c
Confidence 5
No 172
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.00041 Score=64.44 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc-----C-c
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-A 287 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal-----G-A 287 (354)
++...+-++++.+.|+..|++..= =|+. .-+.++.+.++.+.. ++|||++|||++.+|+.++..+ | +
T Consensus 143 ~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~---~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v 217 (241)
T PRK14114 143 EIDPVSLLKRLKEYGLEEIVHTEIEKDGTL---QEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLL 217 (241)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEeechhhcC---CCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcE
Confidence 334466688999999999998542 1221 236678888888876 8999999999999999999987 6 9
Q ss_pred CEEEEcHHHHH
Q 018519 288 SGIFIGRPVVY 298 (354)
Q Consensus 288 d~V~igr~~l~ 298 (354)
++|.+|+++..
T Consensus 218 ~gvivg~Al~~ 228 (241)
T PRK14114 218 KGVIVGRAFLE 228 (241)
T ss_pred EEEEEehHHHC
Confidence 99999998764
No 173
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.55 E-value=0.00028 Score=65.20 Aligned_cols=71 Identities=30% Similarity=0.425 Sum_probs=49.0
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCcc----EEEcCCC------CCHHHHHHHHHcCc--CEE
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP----VFLDGGV------RRGTDVFKALALGA--SGI 290 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~----vi~~GGi------~~g~dv~kalalGA--d~V 290 (354)
++.+.++|+|.|..+-. +. ........+.+.++.+.. .+| |.++||+ ++..++.+++.+|| .++
T Consensus 152 ~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~ 227 (236)
T PF01791_consen 152 ARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGT 227 (236)
T ss_dssp HHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEE
T ss_pred HHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHH
Confidence 56779999999998643 11 111122333444444433 566 9999999 99999999999999 888
Q ss_pred EEcHHHH
Q 018519 291 FIGRPVV 297 (354)
Q Consensus 291 ~igr~~l 297 (354)
..||.+.
T Consensus 228 ~~Gr~i~ 234 (236)
T PF01791_consen 228 SSGRNIW 234 (236)
T ss_dssp EEHHHHH
T ss_pred HHHHHHH
Confidence 8888653
No 174
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.55 E-value=0.0022 Score=62.07 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=60.1
Q ss_pred ccCCHHHHHHHHHh-CCCEEEEecCCcCCCCCCcChHHHHHHHHH-----Hh-cCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 216 GVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 216 Gi~~~~~a~~~~~~-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~-----~~-~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
-|.+.++..++.++ |++.|-|.|.-=+.+... +....++.. .+ +.++.+|..+||++++|+......|||
T Consensus 236 EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD---l~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~Gad 312 (338)
T PLN02460 236 EVHDEREMDRVLGIEGVELIGINNRSLETFEVD---ISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVK 312 (338)
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC---HHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCC
Confidence 46799999999998 999999977542222222 333333333 23 235668999999999999999999999
Q ss_pred EEEEcHHHHH
Q 018519 289 GIFIGRPVVY 298 (354)
Q Consensus 289 ~V~igr~~l~ 298 (354)
+|.||..++.
T Consensus 313 AvLVGEsLMr 322 (338)
T PLN02460 313 AVLVGESLVK 322 (338)
T ss_pred EEEECHHHhC
Confidence 9999999886
No 175
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.0019 Score=58.37 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=70.7
Q ss_pred ccCCHHHHHHHHH-hCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQ-AGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~-~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
|+.++++..+-.+ +|+|.+.+ |-|+ |..+-.+.++.|..+++.......|-+.||| +++++-.....|++.|.+
T Consensus 115 ~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIv 191 (217)
T COG0269 115 GVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIV 191 (217)
T ss_pred cCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEE
Confidence 6667777765555 99999999 8665 3323334478888888776434889999999 588998888999999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
||.+. +..++.+..+.+++++.
T Consensus 192 GraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 192 GRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred Cchhc------CCCCHHHHHHHHHHHHh
Confidence 99764 34445556666666664
No 176
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.53 E-value=0.0023 Score=57.59 Aligned_cols=118 Identities=25% Similarity=0.229 Sum_probs=73.7
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhh
Q 018519 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (354)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (354)
+-+....+.+...+.++.+.+.|.+.+.+|+.+|.. ...++.+.++
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a----------------------------------~~~I~~l~~~ 56 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNA----------------------------------LEAIEALRKE 56 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTH----------------------------------HHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccH----------------------------------HHHHHHHHHH
Confidence 334456788888888888899999999999987631 0113333333
Q ss_pred hcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC
Q 018519 207 QIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 286 (354)
Q Consensus 207 ~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG 286 (354)
..+-.++-..|++.++++.+.++|+++|+- -+- +-+.+....+ . ++|++ =|+.|+.++.+|+.+|
T Consensus 57 ~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-P~~---------~~~v~~~~~~-~--~i~~i--PG~~TptEi~~A~~~G 121 (196)
T PF01081_consen 57 FPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-PGF---------DPEVIEYARE-Y--GIPYI--PGVMTPTEIMQALEAG 121 (196)
T ss_dssp HTTSEEEEES--SHHHHHHHHHHT-SEEEE-SS-----------HHHHHHHHH-H--TSEEE--EEESSHHHHHHHHHTT
T ss_pred CCCCeeEEEeccCHHHHHHHHHcCCCEEEC-CCC---------CHHHHHHHHH-c--CCccc--CCcCCHHHHHHHHHCC
Confidence 222223333589999999999999999963 211 1233333332 2 45544 5799999999999999
Q ss_pred cCEEEEc
Q 018519 287 ASGIFIG 293 (354)
Q Consensus 287 Ad~V~ig 293 (354)
|+.|=+=
T Consensus 122 ~~~vK~F 128 (196)
T PF01081_consen 122 ADIVKLF 128 (196)
T ss_dssp -SEEEET
T ss_pred CCEEEEe
Confidence 9998653
No 177
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.53 E-value=0.00046 Score=65.18 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
-+.+.|+++.+.++|+|.|.++|- +.+.|.++.+.++ .++.|.++||| +.+.+.++..+|+|.+.+
T Consensus 188 Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 188 ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISS 256 (273)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEe
Confidence 456999999999999999987652 3556666666543 36779999999 999999999999999999
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|+++.
T Consensus 257 G~l~~ 261 (273)
T PRK05848 257 GSLIH 261 (273)
T ss_pred Chhhc
Confidence 99764
No 178
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.51 E-value=0.00059 Score=63.07 Aligned_cols=77 Identities=27% Similarity=0.416 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.++.+.+.|++.+.+-..-+ ........+..|.++.+.. .+|++++|||++.+|+.+++.+|||.|.+|+..+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 355778888999999998744321 1112355677888888766 7999999999999999999999999999999654
No 179
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.51 E-value=0.00072 Score=62.21 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|++.|.+..-.+ ........++.+.++.+.+ ++||+++|||++-+|+.+++.+||+.|.+|+..+
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l 107 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 345677888899999888855332 1123356678888888876 7999999999999999999999999999998765
No 180
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.49 E-value=0.00062 Score=63.35 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH---HcCcCEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGASGI 290 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal---alGAd~V 290 (354)
++...+.++++.+.|+..|++..- -|++ .-+.++.+.++++.. ++|||++|||++-+|+.+.- ..|+++|
T Consensus 148 ~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~---~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~gv 222 (243)
T TIGR01919 148 GGDLEVLERLLDSGGCSRVVVTDSKKDGLS---GGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVSVA 222 (243)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEecCCcccC---CCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCeeEE
Confidence 444567778999999999998542 2221 235677888888775 89999999999999998764 3599999
Q ss_pred EEcHHHHH
Q 018519 291 FIGRPVVY 298 (354)
Q Consensus 291 ~igr~~l~ 298 (354)
.+|+++.-
T Consensus 223 ivg~Al~~ 230 (243)
T TIGR01919 223 IGGKLLYA 230 (243)
T ss_pred EEhHHHHc
Confidence 99998764
No 181
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.49 E-value=0.021 Score=52.11 Aligned_cols=172 Identities=17% Similarity=0.114 Sum_probs=108.2
Q ss_pred hHHHHHHHHHcCCcEEecCCC------CCCH----HHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCC
Q 018519 90 EYATARAASAAGTIMTLSSWS------TSSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~------~~~~----eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~ 159 (354)
+..-.+.+.+.|..-.+++.- ..+. .++.+..+++..+|++. .|.+.+.+..++..+..- .+.+-+
T Consensus 9 d~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~~-~~~~~mi~~a~~l~~~~~-~i~iKI-- 84 (213)
T TIGR00875 9 NVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETIS-LDAEGMVEEAKELAKLAP-NIVVKI-- 84 (213)
T ss_pred CHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEee-CCHHHHHHHHHHHHHhCC-CeEEEe--
Confidence 455555666666655554431 1122 34444445788999974 676666666665555543 344433
Q ss_pred CCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecC
Q 018519 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNH 239 (354)
Q Consensus 160 p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~ 239 (354)
|.. .+| ...++.+.+. .-.+....|.+.+.|..|.++|++.|.. .
T Consensus 85 P~T-------------~~G------------------l~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--y 129 (213)
T TIGR00875 85 PMT-------------SEG------------------LKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSP--F 129 (213)
T ss_pred CCC-------------HHH------------------HHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEe--e
Confidence 321 011 0112222221 1223334688999999999999998765 5
Q ss_pred CcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHh
Q 018519 240 GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 240 gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~ 301 (354)
-||-.+.+...+..+.++.+.++ .+..|++.+ +|+..++.+++.+|||.|-+.-.++..+.
T Consensus 130 vgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 130 VGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDVMQQLF 193 (213)
T ss_pred cchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 55655566677777777777652 367766666 99999999999999999999988887764
No 182
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.46 E-value=0.00066 Score=62.72 Aligned_cols=76 Identities=25% Similarity=0.239 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
..+.++...+. ++.+.+..-.+ ......+..+.+.++.+.. .+||++.|||+|.+|+.+++.+||++|.+|+.+..
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~-~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDR-VGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCc-cccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 34455666777 88887743211 0012345677888888876 89999999999999999999999999999998775
No 183
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.45 E-value=0.027 Score=53.51 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=77.5
Q ss_pred CCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCc-ChHHHHHHHHHHhcCCccEEEcCCCCCH-HHHHHHHHcCcCEEE
Q 018519 218 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 291 (354)
Q Consensus 218 ~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~-~~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~kalalGAd~V~ 291 (354)
.++++|.+.. +.|+|.+-|+- ||-+ .+| -.++.|.+|.+.+ ++|++.-||=..+ +++.+++.+|+.-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 6899998776 69999999865 5643 232 2368899999987 8999999999888 566678899999999
Q ss_pred EcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 292 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 292 igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
++|-+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543211 00 0112344566777888888888754
No 184
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.43 E-value=0.0012 Score=60.64 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCC-CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.+.+++..+.+.|+|+|.++.---+.. +..+..++.+.++.+.+ ++||++-||| +.+++.+.+..||++|.+-+.+
T Consensus 119 ~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai 195 (221)
T PRK06512 119 RDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLASAVEVAETGAEFVALERAV 195 (221)
T ss_pred CCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHh
Confidence 378889999999999999854321111 12233456676666665 7999999999 8999999999999999999987
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 196 ~~ 197 (221)
T PRK06512 196 FD 197 (221)
T ss_pred hC
Confidence 64
No 185
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.40 E-value=0.046 Score=51.79 Aligned_cols=204 Identities=23% Similarity=0.264 Sum_probs=121.6
Q ss_pred HHHHHHHHHcCCcEEecCCC----CCCHHHH-------HhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCC
Q 018519 91 YATARAASAAGTIMTLSSWS----TSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (354)
Q Consensus 91 ~~la~aa~~~G~~~~~s~~~----~~~~eei-------~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~ 159 (354)
.++.++|++.+.|.++.... ....+.+ ++...-|..++| |+....+.+.+|.++||+-+.++..
T Consensus 27 ~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVMiD~S- 101 (276)
T cd00947 27 KAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVMIDGS- 101 (276)
T ss_pred HHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEeCCC-
Confidence 48888999999998885321 1233332 222335666665 5555567778888899998887532
Q ss_pred CCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCC------cc-------cc-c-ccCCHHHHH
Q 018519 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR------SL-------SW-K-GVLTAEDAR 224 (354)
Q Consensus 160 p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~w-~-Gi~~~~~a~ 224 (354)
.....+ |+. ....+.++....... .+ .. + ...++++|+
T Consensus 102 -~l~~ee----------------Ni~----------~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~ 154 (276)
T cd00947 102 -HLPFEE----------------NVA----------KTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAE 154 (276)
T ss_pred -CCCHHH----------------HHH----------HHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHH
Confidence 211110 110 001111111111000 00 00 1 136899999
Q ss_pred HHHH-hCCCEEEEec---CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH-HHHHHHcCcCEEEEcHHHHHH
Q 018519 225 IAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 225 ~~~~-~G~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-v~kalalGAd~V~igr~~l~~ 299 (354)
...+ .|+|.+-|+- ||.+......-.++.|.+|.+.+ ++|++.=||=..+.| +.|++.+|..-|-+++-+..+
T Consensus 155 ~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 155 EFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred HHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 8875 6999999874 56432101123577899999998 899999999988855 778889999999999977554
Q ss_pred Hhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCC
Q 018519 300 LAA-------EG------EKGVRRVLEMLREEFELAMALSGC 328 (354)
Q Consensus 300 ~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~ 328 (354)
... .. ..-.....+.+++.++..|..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 233 FTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 321 00 011233445666677777777664
No 186
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.40 E-value=0.012 Score=51.92 Aligned_cols=171 Identities=22% Similarity=0.089 Sum_probs=101.7
Q ss_pred hHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC---CceEEEEeecCC----hHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~---~~~~~QLy~~~d----~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
-..+++.+.+.|+..++-.. .-++.+.+..+ -+.++++.. .+ .+...+.++.++++|++++.+.. |.
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~- 88 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI- 88 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH-
Confidence 34778888888886654332 22344443332 244566543 33 56777888999999999998864 21
Q ss_pred CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhh--cCCccccc--ccC-CHHHHH----HHHHhCCCE
Q 018519 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ--IDRSLSWK--GVL-TAEDAR----IAVQAGAAG 233 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~w~--Gi~-~~~~a~----~~~~~G~d~ 233 (354)
+.+ +.+ ... .....++++.+.. ..|.+.+. +.. +++... .+.+.|+|+
T Consensus 89 ~~~----------~~~-~~~------------~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~ 145 (201)
T cd00945 89 GSL----------KEG-DWE------------EVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADF 145 (201)
T ss_pred HHH----------hCC-CHH------------HHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCE
Confidence 000 100 000 0011123333332 23333222 112 444443 356899999
Q ss_pred EEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 234 IIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 234 I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
|..+.. .. .+...++.+.++++..+.+++|++.||+.+..++..++.+||+++.+|
T Consensus 146 iK~~~~-~~---~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 146 IKTSTG-FG---GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred EEeCCC-CC---CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 998542 11 133456777777776654689999999999999999999999999875
No 187
>PRK08185 hypothetical protein; Provisional
Probab=97.39 E-value=0.049 Score=51.78 Aligned_cols=110 Identities=21% Similarity=0.262 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHHh-CCCEEEEec---CCcCCCCCCc--ChHHHHHHHHHHhcCCccEEEcCCCCCHHH-HHHHHHcCcCE
Q 018519 217 VLTAEDARIAVQA-GAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASG 289 (354)
Q Consensus 217 i~~~~~a~~~~~~-G~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-v~kalalGAd~ 289 (354)
..++++|..+.+. |+|.+-++- ||-+.. .+. -.++.|.+|++.+ ++|+++=||...+.| +.|++.+|..-
T Consensus 148 ~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~-~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK-DKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhCCCEEEeccCcccCCcCC-CCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 4589999999987 999999964 443221 112 2478899999887 899999999977755 45788899999
Q ss_pred EEEcHHHHHHHhh-------cCH------HHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 290 IFIGRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 290 V~igr~~l~~~~~-------~G~------~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|-+++-+..+... ... .-.....+.+++.++..|+.+|..
T Consensus 225 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 225 INISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred EEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999966543211 010 123344566777788888888754
No 188
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.39 E-value=0.0012 Score=60.45 Aligned_cols=77 Identities=30% Similarity=0.422 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|++.+.|-.--+. ..+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+|||.|.+|+..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAV 105 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3556778889999999988543321 123445678888888876 7999999999999999999999999999998654
No 189
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.38 E-value=0.045 Score=52.09 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=78.6
Q ss_pred cCCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCH-HHHHHHHHcCcCE
Q 018519 217 VLTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASG 289 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~kalalGAd~ 289 (354)
.+++++|+... +.|+|.+-|+- ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +|+.|++.+|..-
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~K 229 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSK 229 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence 36899999887 48999999874 5543 3333 467899999888 8999999998888 6677899999999
Q ss_pred EEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 290 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 290 V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|-+++-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 230 INVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999976543211 00 1123344567777888888888754
No 190
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.38 E-value=0.00094 Score=61.54 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
..+.|+...+. ++.+.+-.--|. ..+.++.++.+.++.+.+ .+||+++|||+|-+|+.+++.+||+.|.+|+..+
T Consensus 32 p~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 32 PVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 34556666666 888776322111 223356788888888876 7999999999999999999999999999999654
No 191
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.38 E-value=0.001 Score=63.02 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+-+.+++..+.++|+|.|.++|- +.+.+.++.+.+++++|+.++||| +.+.+.++.++|+|.+.+|.+.
T Consensus 196 v~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 46899999999999999988532 345666766666568999999999 6888988889999999999865
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 265 ~ 265 (277)
T PRK05742 265 K 265 (277)
T ss_pred c
Confidence 4
No 192
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.37 E-value=0.0072 Score=56.52 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhC-CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 219 TAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 219 ~~~~a~~~~~~G-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
..|.++.++..| +|+|+|+|.+- +.+++++.|.++++... ++|+++.||+ +++.+.+++.. ||+|.+|+-|
T Consensus 159 ~~e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGv-t~eNv~e~l~~-adGviVgS~~ 230 (257)
T TIGR00259 159 LESIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGV-NLENVEELLSI-ADGVIVATTI 230 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCC-CHHHHHHHHhh-CCEEEECCCc
Confidence 345677777777 99999987541 34678899988887553 6899999999 57888888887 9999999864
No 193
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.34 E-value=0.0045 Score=56.40 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHh
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
.+-+....+.+...+.++.+.+.|.+.|.+|+..|.. ...++++.+
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~----------------------------------~~~I~~l~~ 62 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAA----------------------------------LEAIRLIAK 62 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccH----------------------------------HHHHHHHHH
Confidence 4455556788888889999999999999999877631 011333333
Q ss_pred hhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc
Q 018519 206 GQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 206 ~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal 285 (354)
...+..++-..|++.++++.+.++|+++++.-+ ..+ +.+....+ . .+|+ -=|+.|+.++..++.+
T Consensus 63 ~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~---------~~~-~vi~~a~~-~--~i~~--iPG~~TptEi~~a~~~ 127 (212)
T PRK05718 63 EVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG---------LTP-PLLKAAQE-G--PIPL--IPGVSTPSELMLGMEL 127 (212)
T ss_pred HCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC---------CCH-HHHHHHHH-c--CCCE--eCCCCCHHHHHHHHHC
Confidence 322222333357899999999999999997521 111 33433333 1 3444 3579999999999999
Q ss_pred CcCEEEE
Q 018519 286 GASGIFI 292 (354)
Q Consensus 286 GAd~V~i 292 (354)
||+.|-+
T Consensus 128 Ga~~vKl 134 (212)
T PRK05718 128 GLRTFKF 134 (212)
T ss_pred CCCEEEE
Confidence 9999877
No 194
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.33 E-value=0.0012 Score=62.71 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.+++..+.++|+|.|-++|-+ + +.+.++.+.+ ..++++.++||| +.+.+.++.++|+|.+.+|
T Consensus 203 v~tleea~eA~~~GaD~I~LDn~~-------~---e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvg 271 (288)
T PRK07428 203 TETLEQVQEALEYGADIIMLDNMP-------V---DLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSS 271 (288)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEc
Confidence 468999999999999999996532 2 4444444433 357999999999 6999999999999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
+++.
T Consensus 272 sl~~ 275 (288)
T PRK07428 272 APIT 275 (288)
T ss_pred hhhh
Confidence 9765
No 195
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.33 E-value=0.0094 Score=53.46 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCEEEEec-CCc-CCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 220 AEDARIAVQAGAAGIIVSN-HGA-RQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~-~gg-~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+.++.. ..++|.|.+.. +.| +.........+.+.++++..+ .++|+++.|||.. +++.+++..|||+|.+||
T Consensus 118 ~~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 118 VEVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred HHHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 3444443 44589987754 322 221122233445555555442 1489999999996 999999999999999999
Q ss_pred HHH
Q 018519 295 PVV 297 (354)
Q Consensus 295 ~~l 297 (354)
+++
T Consensus 196 ai~ 198 (211)
T cd00429 196 ALF 198 (211)
T ss_pred HHh
Confidence 876
No 196
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.31 E-value=0.058 Score=51.33 Aligned_cols=107 Identities=19% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCHHHH-HHHHHcCcCEE
Q 018519 218 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDV-FKALALGASGI 290 (354)
Q Consensus 218 ~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv-~kalalGAd~V 290 (354)
+++++|+... +.|+|.+-|+. ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+.|- .||+.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5899998876 59999999875 6643 3334 577899999988 7999988887777655 47888999999
Q ss_pred EEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+++-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999966543210 00 0112334456667777777777754
No 197
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.30 E-value=0.053 Score=51.71 Aligned_cols=109 Identities=25% Similarity=0.329 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCc--ChHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcCcCE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASG 289 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalGAd~ 289 (354)
-.++++|+...+ .|+|.+-|+- ||.+. ..| -.++.|.+|.+.+ ++|++.=||=..+. ++.|++.+|..-
T Consensus 157 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~K 232 (288)
T TIGR00167 157 YTDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVK 232 (288)
T ss_pred CCCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence 358899998875 7999999874 56432 223 3678999999988 89999999998884 677899999999
Q ss_pred EEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 290 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 290 V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|-+++-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 233 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 233 VNIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EEcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999976543211 00 1123345567777778888887754
No 198
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.30 E-value=0.0016 Score=60.23 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHH-hCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 220 AEDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 220 ~~~a~~~~~-~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
.+.|+...+ .|+|.+.|-.--+. ..+.+...+.+.++.+.+ .+||.+.|||||-+|+.+++.+||+.|.+|+..+
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 467777777 69999987432111 123456788899998876 7999999999999999999999999999999654
No 199
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.29 E-value=0.068 Score=51.30 Aligned_cols=109 Identities=19% Similarity=0.191 Sum_probs=78.2
Q ss_pred CCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCc--ChHHHHHHHHHHhcCCccEEEcCCCCCHH--------------
Q 018519 218 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 277 (354)
Q Consensus 218 ~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-------------- 277 (354)
.++++|....+ .|+|++-|+- ||-+-.. +. -.++.|.+|++.+ ++|++.=||=..+.
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 57999998875 7999999864 5543211 33 3578899999988 89999999888787
Q ss_pred --------HHHHHHHcCcCEEEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 278 --------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 278 --------dv~kalalGAd~V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
++.||+.+|..-|-+++-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999976554321 00 1123344566677777778777754
No 200
>PLN02411 12-oxophytodienoate reductase
Probab=97.28 E-value=0.0044 Score=61.63 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=46.6
Q ss_pred CCCEEEEecCCcC---CCC---CCcCh--HHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHHH
Q 018519 230 GAAGIIVSNHGAR---QLD---YVPAT--IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 298 (354)
Q Consensus 230 G~d~I~vs~~gg~---~~~---~~~~~--~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l~ 298 (354)
|+|.|.||..... +.. .++.. .....++++.+ ++|||+.|+| +.+++.++++.| ||.|.+||++|-
T Consensus 273 ~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 273 KLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 5999999753110 000 11111 12346677777 7899999999 678899999999 999999999885
No 201
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.26 E-value=0.066 Score=50.89 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=76.5
Q ss_pred cCCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCc--ChHHHHHHHHHHhcCCccEEEcCCCCCHHH-HHHHHHcCcCE
Q 018519 217 VLTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASG 289 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-v~kalalGAd~ 289 (354)
..++++|+... +.|+|.+-|+- ||-+ .+. -.++.|.+|++.+ ++|++.=||=..+.| +.|++.+|..-
T Consensus 152 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~K 226 (282)
T TIGR01858 152 YTDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICK 226 (282)
T ss_pred cCCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeE
Confidence 46889998776 59999999864 5643 333 3578899999988 799998888777755 55788899999
Q ss_pred EEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 290 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 290 V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|-+++-+..+... .. ..-.....+.+++-++..|+.+|..
T Consensus 227 iNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 227 VNVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999976543321 00 1123344566777777788877754
No 202
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.26 E-value=0.0019 Score=57.10 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCC-C-CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+.+.++++.+.+.|+|.+.++.-..++ . +..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-+
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 578999999999999999997533222 1 12345578888888877 7999999999 79999999999999999887
Q ss_pred H
Q 018519 295 P 295 (354)
Q Consensus 295 ~ 295 (354)
.
T Consensus 179 a 179 (180)
T PF02581_consen 179 A 179 (180)
T ss_dssp H
T ss_pred e
Confidence 5
No 203
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.25 E-value=0.0027 Score=58.56 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=53.8
Q ss_pred HHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCc-cEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 227 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 227 ~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i-~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.-.|...+.+.-.++ .+.+.+.+.+.++++.+ +. ||++-|||++.+++.+++..|||+|.+|+.+.-
T Consensus 151 ~~~g~~~vYle~gs~---~g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 151 EYLGMPIVYLEYGGG---AGDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HHcCCCeEEEECCCC---CCCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 344777777753332 24566788899988876 56 999999999999999999999999999998764
No 204
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.25 E-value=0.0012 Score=61.48 Aligned_cols=68 Identities=22% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
.+.|+...+.|++.+-|--= +.+..+.+.+|.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHH
Confidence 68899999999999976322 444788899999877 799999999998 999999999999999999654
No 205
>PRK01362 putative translaldolase; Provisional
Probab=97.24 E-value=0.049 Score=49.71 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=95.9
Q ss_pred HHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCccc
Q 018519 116 EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (354)
Q Consensus 116 ei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (354)
++++..+++..+|+. ..|.+.+.+..++..+.+ +.+.+-+ |.. ++|
T Consensus 45 ~i~~~i~g~vs~qv~-~~d~~~m~~~a~~l~~~~-~~i~iKI--P~T-------------~~G----------------- 90 (214)
T PRK01362 45 EICSIVDGPVSAEVI-ALDAEGMIKEGRELAKIA-PNVVVKI--PMT-------------PEG----------------- 90 (214)
T ss_pred HHHHhcCCCEEEEEe-eCCHHHHHHHHHHHHHhC-CCEEEEe--CCC-------------HHH-----------------
Confidence 444444577889987 467776666666655554 3344443 331 111
Q ss_pred chhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc--C-CccEEEcCC
Q 018519 196 NDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--G-RIPVFLDGG 272 (354)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~-~i~vi~~GG 272 (354)
...++.+.+. .-++....|.+.+.|..|.++|++.|.. .-||--+.+...+..+.++.+.+. + +..|++.+
T Consensus 91 -~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS- 164 (214)
T PRK01362 91 -LKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAAS- 164 (214)
T ss_pred -HHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEee-
Confidence 0112222221 1223334688999999999999998865 556655667777888888777663 2 45555554
Q ss_pred CCCHHHHHHHHHcCcCEEEEcHHHHHHHh
Q 018519 273 VRRGTDVFKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 273 i~~g~dv~kalalGAd~V~igr~~l~~~~ 301 (354)
+|+..++.+++.+|||.+-+.-.++..+.
T Consensus 165 ~r~~~~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 165 VRHPMHVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred cCCHHHHHHHHHcCCCEEecCHHHHHHHH
Confidence 99999999999999999999988877664
No 206
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.22 E-value=0.0032 Score=56.65 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=91.6
Q ss_pred hHHHHHHHHHcCCcEEecCCCC-CC---HHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCch
Q 018519 90 EYATARAASAAGTIMTLSSWST-SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~-~~---~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r 165 (354)
-..+++++.+.|+..+==++.+ .. ++++++..|+. .+ ..-.=.+.+.+++|.++|++.++- |..
T Consensus 22 a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~-~v----GAGTV~~~e~a~~a~~aGA~FivS----P~~--- 89 (196)
T PF01081_consen 22 AVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDL-LV----GAGTVLTAEQAEAAIAAGAQFIVS----PGF--- 89 (196)
T ss_dssp HHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTS-EE----EEES--SHHHHHHHHHHT-SEEEE----SS----
T ss_pred HHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCC-ee----EEEeccCHHHHHHHHHcCCCEEEC----CCC---
Confidence 3689999999998765323332 22 23444445532 11 112223456788899999998762 321
Q ss_pred hHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCC
Q 018519 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLD 245 (354)
Q Consensus 166 ~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~ 245 (354)
+ .++.+...+...+ .+=|++++.++..|.++|++.+.+.-.+ ..
T Consensus 90 --------~-----------------------~~v~~~~~~~~i~--~iPG~~TptEi~~A~~~G~~~vK~FPA~---~~ 133 (196)
T PF01081_consen 90 --------D-----------------------PEVIEYAREYGIP--YIPGVMTPTEIMQALEAGADIVKLFPAG---AL 133 (196)
T ss_dssp --------------------------------HHHHHHHHHHTSE--EEEEESSHHHHHHHHHTT-SEEEETTTT---TT
T ss_pred --------C-----------------------HHHHHHHHHcCCc--ccCCcCCHHHHHHHHHCCCCEEEEecch---hc
Confidence 0 0123333322222 2238999999999999999999995432 11
Q ss_pred CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 246 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 246 ~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
+| ...+..++.-++ +++++.+|||.- .++...+.+|+.+|++|+.+.
T Consensus 134 GG---~~~ik~l~~p~p-~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~ 180 (196)
T PF01081_consen 134 GG---PSYIKALRGPFP-DLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLF 180 (196)
T ss_dssp TH---HHHHHHHHTTTT-T-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGG
T ss_pred Cc---HHHHHHHhccCC-CCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhc
Confidence 12 345555554443 799999999985 789999999999999998554
No 207
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.22 E-value=0.017 Score=51.93 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=51.3
Q ss_pred HHHHhCCCEEEEecCCcCCC--CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcC-cCEEEEcHHHH
Q 018519 225 IAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVV 297 (354)
Q Consensus 225 ~~~~~G~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalG-Ad~V~igr~~l 297 (354)
.+...|+|++.+........ .+.+..|+.+.++. . ++|+++.||| +++.+.+++..| +++|-+.+.+.
T Consensus 115 ~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 115 AAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred hhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence 55668999998866321111 12355677777665 2 7899999999 999999999999 99999998654
No 208
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.22 E-value=0.07 Score=50.01 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=86.9
Q ss_pred HHHHhhCC-CceEEEEeecCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcC
Q 018519 115 EEVASTGP-GIRFFQLYVYKD-RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 192 (354)
Q Consensus 115 eei~~~~~-~~~~~QLy~~~d-~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~ 192 (354)
+++++..+ .|..+-.|.+-- .--.++.++++.++|++.+.+ .|.|.- +.+
T Consensus 86 ~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv-pDLP~e---e~~------------------------ 137 (265)
T COG0159 86 EEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV-PDLPPE---ESD------------------------ 137 (265)
T ss_pred HHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe-CCCChH---HHH------------------------
Confidence 34443434 356665564211 112445688999999999765 566641 100
Q ss_pred cccchhhHHHHHhhhc-CCcccccccCCHHHHHHHHHhCCCEEEEecC-CcCCC--CCCcChHHHHHHHHHHhcCCccEE
Q 018519 193 DEANDSGLAAYVAGQI-DRSLSWKGVLTAEDARIAVQAGAAGIIVSNH-GARQL--DYVPATIMALEEVVKATQGRIPVF 268 (354)
Q Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~-gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi 268 (354)
.+....++.. ++.+--....+.+..++..+..--+|.+-.. |-|.. .......+.+.++++.. ++||+
T Consensus 138 ------~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~ 209 (265)
T COG0159 138 ------ELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVL 209 (265)
T ss_pred ------HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeE
Confidence 1222222211 1111111224556666666665556654332 32211 11112345566666655 89999
Q ss_pred EcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhh
Q 018519 269 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 302 (354)
Q Consensus 269 ~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~ 302 (354)
.-=||++++++.+.... ||+|.+|++++..+..
T Consensus 210 vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~ 242 (265)
T COG0159 210 VGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEE 242 (265)
T ss_pred EecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHh
Confidence 99999999999999999 9999999999886543
No 209
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.21 E-value=0.091 Score=50.03 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=75.4
Q ss_pred CCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalGAd~V~i 292 (354)
.++++|+...+ .|+|.+-|+- ||-+.. ...-.++.|.+|.+.+ ++|++.=||=..+. ++.||+.+|..-|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 58999988875 7999999864 564421 1123578899999988 79998888766665 555788999999999
Q ss_pred cHHHHHHHhh-------cCH------HHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 293 GRPVVYSLAA-------EGE------KGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 293 gr~~l~~~~~-------~G~------~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
++-+..+... ... .-.....+.+++-++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554321 000 112344556777777777777754
No 210
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.21 E-value=0.0026 Score=58.35 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHhCCCEEEEecCC--cCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~g--g~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.+.++++.+.+.|.|.|.+-+.+ |+......++.+.+.++.+.++ .++||++-|||++++++..++..|||+|.+
T Consensus 122 ~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 122 NNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 36788888889999998764421 2211101112223333333322 368999999999999999999999999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
|+.++.
T Consensus 202 Gsa~l~ 207 (223)
T PRK04302 202 ASGVVK 207 (223)
T ss_pred ehHHhC
Confidence 999885
No 211
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.21 E-value=0.035 Score=52.08 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHhhCC-CceEEEEeecCCh-H-HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCc
Q 018519 115 EEVASTGP-GIRFFQLYVYKDR-N-VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (354)
Q Consensus 115 eei~~~~~-~~~~~QLy~~~d~-~-~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~ 191 (354)
+++++..+ .|.++--|.+ .. . -.++.++.+.++|++++.+ .|.|.- +
T Consensus 79 ~~ir~~~~~~pivlm~Y~N-~i~~~G~e~F~~~~~~aGvdGlIi-pDLP~e---e------------------------- 128 (259)
T PF00290_consen 79 KEIRKKEPDIPIVLMTYYN-PIFQYGIERFFKEAKEAGVDGLII-PDLPPE---E------------------------- 128 (259)
T ss_dssp HHHHHHCTSSEEEEEE-HH-HHHHH-HHHHHHHHHHHTEEEEEE-TTSBGG---G-------------------------
T ss_pred HHHhccCCCCCEEEEeecc-HHhccchHHHHHHHHHcCCCEEEE-cCCChH---H-------------------------
Confidence 44553333 6777777752 21 1 1456788899999999876 355430 0
Q ss_pred CcccchhhHHHHHhhhcCCcccc-cccCCHHHHHHHHHhCCCEEEEecC-CcCCCCCCc-C-hHHHHHHHHHHhcCCccE
Q 018519 192 MDEANDSGLAAYVAGQIDRSLSW-KGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVP-A-TIMALEEVVKATQGRIPV 267 (354)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~w-~Gi~~~~~a~~~~~~G~d~I~vs~~-gg~~~~~~~-~-~~~~l~~i~~~~~~~i~v 267 (354)
...+.+.........+-. .-.++.+..+...+..-.+|.+-.. |-|...... . ..+.+.++++.. +.||
T Consensus 129 -----~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv 201 (259)
T PF00290_consen 129 -----SEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPV 201 (259)
T ss_dssp -----HHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-E
T ss_pred -----HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--Ccce
Confidence 011222222221111111 1225677777878888888886433 322111111 1 234566666655 8999
Q ss_pred EEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHH
Q 018519 268 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLR 316 (354)
Q Consensus 268 i~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~ 316 (354)
++-=||++++|+.+.. .|||+|.+|++++..+...+.+ ..+.++.+.
T Consensus 202 ~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~~-~~~~~~~~~ 248 (259)
T PF00290_consen 202 AVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGDD-AEKFLKELK 248 (259)
T ss_dssp EEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCCH-HHHHHHHHH
T ss_pred EEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcccc-HHHHHHHHH
Confidence 9999999999998777 9999999999999876544422 233444443
No 212
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.20 E-value=0.079 Score=50.43 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcCcCEEE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIF 291 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalGAd~V~ 291 (354)
..++|+|+...+ .|+|.+-|+- ||-+.. ...-.++.|.+|.+.+ ++|++.=||=..+. ++.|++.+|..-|-
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred CCCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEE
Confidence 368999998875 7999999874 664321 1123567899999988 79998888766664 55678899999999
Q ss_pred EcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 292 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 292 igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
+++-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 231 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 231 VATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred eCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 01 0112344556677777777777743
No 213
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.20 E-value=0.0026 Score=59.67 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++-+|+.+++.+|++.|.+|+..+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~ 107 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL 107 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence 3456778899999999998653221 112356788888888876 7999999999999999999999999999998654
No 214
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.20 E-value=0.0015 Score=61.72 Aligned_cols=70 Identities=27% Similarity=0.302 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+.+.++++.+.++|+|.|-+++- ..+.+.++.+.++.++|+.++||| +...+.+..+.|+|++.+|+++
T Consensus 189 v~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~ 257 (268)
T cd01572 189 VETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALT 257 (268)
T ss_pred ECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeee
Confidence 46899999999999999998553 246677777766446999999999 6899999999999999999865
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 258 ~ 258 (268)
T cd01572 258 H 258 (268)
T ss_pred c
Confidence 4
No 215
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.18 E-value=0.0021 Score=59.34 Aligned_cols=76 Identities=22% Similarity=0.266 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|+|.+.|-.--+. .+.....+.+.++.+.+ .+|+.+.||||+-+|+.+++.+||+.|.+|+..+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 4567888889999999987543221 13456678888888876 6899999999999999999999999999999643
No 216
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.17 E-value=0.0025 Score=60.08 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+.+.++++.+.++|+|.|-++|- ..+.+.++.+.++..+||.++||| +.+.+....+.|||++.+|.++
T Consensus 185 v~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 185 VESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALT 253 (265)
T ss_pred eCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 46899999999999999988552 235677776666446999999999 6889989999999999997654
No 217
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.16 E-value=0.025 Score=51.50 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=94.7
Q ss_pred hHHHHHHHHHcCCcEE-ecCCCC-C---CHHHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 018519 90 EYATARAASAAGTIMT-LSSWST-S---SVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGR 164 (354)
Q Consensus 90 e~~la~aa~~~G~~~~-~s~~~~-~---~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~ 164 (354)
-..+++++.+.|+..+ ++ +.+ . .++++++..|+. ....+.-.+.+.++.+.++|++.++. |..
T Consensus 29 a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~-----~IGAGTVl~~~~a~~a~~aGA~Fivs----P~~-- 96 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEA-----LIGAGTVLNPEQLAQAIEAGAQFIVS----PGL-- 96 (212)
T ss_pred HHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCC-----EEEEeeccCHHHHHHHHHcCCCEEEC----CCC--
Confidence 3589999999998755 33 322 2 345555556631 12233444457788899999988762 321
Q ss_pred hhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc-ccCCHHHHHHHHHhCCCEEEEecCCcCC
Q 018519 165 READIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-GVLTAEDARIAVQAGAAGIIVSNHGARQ 243 (354)
Q Consensus 165 r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-Gi~~~~~a~~~~~~G~d~I~vs~~gg~~ 243 (354)
. | ++.+...+ ..+.+- |++++.++..+.++|++.|.+.-.+ .
T Consensus 97 ---------~-~----------------------~vi~~a~~---~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~--~ 139 (212)
T PRK05718 97 ---------T-P----------------------PLLKAAQE---GPIPLIPGVSTPSELMLGMELGLRTFKFFPAE--A 139 (212)
T ss_pred ---------C-H----------------------HHHHHHHH---cCCCEeCCCCCHHHHHHHHHCCCCEEEEccch--h
Confidence 0 0 11222222 222233 8999999999999999999993311 1
Q ss_pred CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 244 LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
. + ....+..++.-++ .++++..|||.- +++.+.+..|+..+ +|+.+|+
T Consensus 140 ~-g---g~~~lk~l~~p~p-~~~~~ptGGV~~-~ni~~~l~ag~v~~-vggs~L~ 187 (212)
T PRK05718 140 S-G---GVKMLKALAGPFP-DVRFCPTGGISP-ANYRDYLALPNVLC-IGGSWMV 187 (212)
T ss_pred c-c---CHHHHHHHhccCC-CCeEEEeCCCCH-HHHHHHHhCCCEEE-EEChHhC
Confidence 1 1 2344555555453 699999999965 88999999995444 4455554
No 218
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.16 E-value=0.013 Score=55.46 Aligned_cols=71 Identities=27% Similarity=0.321 Sum_probs=56.7
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh-----cCCccEEEcCCCCCHHHHHHHHHcCcCEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGI 290 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGi~~g~dv~kalalGAd~V 290 (354)
-+-+.++++.+.++|+|.|.++|-. .+.+.++++.+ +.++.+.++||| +.+.+.++..+|+|.+
T Consensus 188 Ev~~leea~~a~~agaDiI~LDn~~----------~e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 188 EVESLEDALKAAKAGADIIMLDNMT----------PEEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVI 256 (278)
T ss_pred EeCCHHHHHHHHHcCcCEEEECCCC----------HHHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEE
Confidence 3469999999999999999887642 34455555433 247889999999 8999999999999999
Q ss_pred EEcHHHH
Q 018519 291 FIGRPVV 297 (354)
Q Consensus 291 ~igr~~l 297 (354)
.+|.++.
T Consensus 257 s~galt~ 263 (278)
T PRK08385 257 SLGALTH 263 (278)
T ss_pred EeChhhc
Confidence 9998764
No 219
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.16 E-value=0.098 Score=49.80 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=77.0
Q ss_pred CCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCH-HHHHHHHHcCcCEE
Q 018519 218 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 290 (354)
Q Consensus 218 ~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~kalalGAd~V 290 (354)
.++|+|+...+ .|+|.+-|+- ||-+ .+.| .++.|.+|.+.+ ++|++.=||=..+ +++.|++.+|..-|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 68999998874 6999999875 5543 3333 467899999988 8999999998888 56668999999999
Q ss_pred EEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+++-+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 00 0122344566777777777777754
No 220
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.15 E-value=0.0044 Score=56.39 Aligned_cols=45 Identities=40% Similarity=0.720 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCccE--EEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 251 IMALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 251 ~~~l~~i~~~~~~~i~v--i~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
++.+.++.+. ++.|| ++.|||.|+.|++-.+.||||+|++|+-+.
T Consensus 195 ~elv~~~~~~--grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIF 241 (296)
T COG0214 195 YELVKEVAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 241 (296)
T ss_pred HHHHHHHHHh--CCCCeEeecccCcCChhHHHHHHHhCCCeEEeccccc
Confidence 3444444432 35665 799999999999999999999999999554
No 221
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.14 E-value=0.0025 Score=60.39 Aligned_cols=70 Identities=29% Similarity=0.218 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+.+.++++.+.+.|+|.|.+++ -..+.+.++.+.++.++|+.+.||| +.+.+....+.|+|++.+|.+.
T Consensus 195 v~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 195 TETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 4689999999999999998843 2246677777766556889999999 8999999999999999999875
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 264 ~ 264 (277)
T PRK08072 264 H 264 (277)
T ss_pred c
Confidence 4
No 222
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.13 E-value=0.0028 Score=58.60 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
++.-.+.++++.+.|+..|++.+- =|++ .-+.++.+..+.+. ..|+|++|||++-+|+.++..+|+++|.+|
T Consensus 145 ~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~---~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 145 SMEVIDGIKKVNELELLGIIFTYISNEGTT---KGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred CCCHHHHHHHHHhcCCCEEEEecccccccC---cCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 334457778999999999888542 1221 22456667666553 345999999999999999999999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
+++.
T Consensus 219 ~Aly 222 (232)
T PRK13586 219 MAFY 222 (232)
T ss_pred hhhh
Confidence 9865
No 223
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.12 E-value=0.015 Score=52.19 Aligned_cols=114 Identities=27% Similarity=0.374 Sum_probs=71.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCC---------------------CCC---------CcChHHHHHHHHHHhcCCc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQ---------------------LDY---------VPATIMALEEVVKATQGRI 265 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~---------------------~~~---------~~~~~~~l~~i~~~~~~~i 265 (354)
|.-+.-+|.+=+.-|+..|...|..|+. ++. -..+++.+.+..+. +++
T Consensus 131 G~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~--Grl 208 (296)
T KOG1606|consen 131 GCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQL--GRL 208 (296)
T ss_pred ccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHc--CCC
Confidence 6667778888888899999887654431 110 02234444444432 467
Q ss_pred cE--EEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHH-------HhhcCHHHH-----HHHHHHHHHHHHHHHHHhCCCCh
Q 018519 266 PV--FLDGGVRRGTDVFKALALGASGIFIGRPVVYS-------LAAEGEKGV-----RRVLEMLREEFELAMALSGCRSL 331 (354)
Q Consensus 266 ~v--i~~GGi~~g~dv~kalalGAd~V~igr~~l~~-------~~~~G~~gv-----~~~l~~l~~el~~~m~~~G~~~i 331 (354)
|| ++.|||.|+.|++-.+.||+|+|++|+-+..+ .+. .+.+ -..+-.....|...|.-...+++
T Consensus 209 PVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ai--VqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~ 286 (296)
T KOG1606|consen 209 PVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAI--VQAVTHYDDPAKLAEVSSGLGEAMVGISIQSI 286 (296)
T ss_pred ceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHH--HHHHHccCCHHHHHHHhccHHHHhhcccccch
Confidence 76 79999999999999999999999999854321 000 0001 12355566677777765555554
Q ss_pred hh
Q 018519 332 KE 333 (354)
Q Consensus 332 ~~ 333 (354)
++
T Consensus 287 ~~ 288 (296)
T KOG1606|consen 287 KE 288 (296)
T ss_pred hh
Confidence 43
No 224
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.12 E-value=0.0024 Score=58.33 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
-|..+...|...|.+.+.|. ..+.+.+..+++.+. ++||+..||||+.+++.+++.+|||.|.+|+.+.-
T Consensus 140 yA~aae~~g~~ivyLe~SG~------~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 140 YALAAEYLGMPIVYLEYSGA------YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHHcCCeEEEeCCCCC------cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 34567788988888862222 245677888877653 68999999999999999999999999999997753
No 225
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.12 E-value=0.0061 Score=55.41 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCC--CCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+.+.|++.++.+.|+|+|.++.-..++- +..+..++.+..+.+.. ++|+++-||| +.+.+...+..||++|.+-|
T Consensus 111 ~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvs 187 (211)
T COG0352 111 THDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLENVPEVLEAGADGVAVVS 187 (211)
T ss_pred cCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHhCCCeEEehh
Confidence 4699999999999999999854344432 22344577888887765 6999999999 57888899999999999999
Q ss_pred HHHH
Q 018519 295 PVVY 298 (354)
Q Consensus 295 ~~l~ 298 (354)
.++.
T Consensus 188 ai~~ 191 (211)
T COG0352 188 AITS 191 (211)
T ss_pred Hhhc
Confidence 8775
No 226
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.09 E-value=0.056 Score=51.54 Aligned_cols=205 Identities=21% Similarity=0.214 Sum_probs=121.3
Q ss_pred HHHHHHHHHcCCcEEecCCCC----CCHHH-------HHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCC
Q 018519 91 YATARAASAAGTIMTLSSWST----SSVEE-------VASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 159 (354)
Q Consensus 91 ~~la~aa~~~G~~~~~s~~~~----~~~ee-------i~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~ 159 (354)
.++.++|++.+.|.++....+ .+.+. +++...-|.+++| |+....+.+++|.++||+-+.++-..
T Consensus 31 ~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~DgS~ 106 (287)
T PF01116_consen 31 RAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMIDGSA 106 (287)
T ss_dssp HHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE-TT
T ss_pred HHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccccCCc
Confidence 478889999999888743211 11222 2233446777776 45555677888888899988876432
Q ss_pred CCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCC------cc------------cccccCCHH
Q 018519 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR------SL------------SWKGVLTAE 221 (354)
Q Consensus 160 p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------~w~Gi~~~~ 221 (354)
- ...+ |+. ....+.++....... .+ ...-..+++
T Consensus 107 l--~~ee----------------Ni~----------~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~ 158 (287)
T PF01116_consen 107 L--PFEE----------------NIA----------ITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPE 158 (287)
T ss_dssp S---HHH----------------HHH----------HHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHH
T ss_pred C--CHHH----------------HHH----------HHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHH
Confidence 1 1000 110 001111111111000 00 011236899
Q ss_pred HHHHH-HHhCCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcCcCEEEEcH
Q 018519 222 DARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGR 294 (354)
Q Consensus 222 ~a~~~-~~~G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalGAd~V~igr 294 (354)
+|+.. .+.|+|.+-|+- ||.+... ..| .++.|.+|.+.++ ++|++.=||=..+. ++.|++.+|..-|-+++
T Consensus 159 ~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 236 (287)
T PF01116_consen 159 EAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINIGT 236 (287)
T ss_dssp HHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEESH
T ss_pred HHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEEeh
Confidence 99877 599999999964 6644321 144 4678999999875 79999999988887 67789999999999999
Q ss_pred HHHHHHhh-------c--C----HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 295 PVVYSLAA-------E--G----EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 295 ~~l~~~~~-------~--G----~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+..+... . . ..-.....+.+++.++..|..+|..
T Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 237 ELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp HHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77654321 0 0 0123344567777778888888764
No 227
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.05 E-value=0.15 Score=48.57 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=75.5
Q ss_pred CCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCHHH-HHHHHHcCcCEE
Q 018519 218 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALALGASGI 290 (354)
Q Consensus 218 ~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-v~kalalGAd~V 290 (354)
.++++|+... +.|+|.+-|+- ||.+ .+.| .++.|.+|++.+ ++|++.=||=..+.| +.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5899999886 57999999864 5643 3333 567899999988 799999888777755 557888999999
Q ss_pred EEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+++-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 0113344566677777777777754
No 228
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.05 E-value=0.087 Score=48.30 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=65.2
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHHHHHHHcCcCE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASG 289 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv~kalalGAd~ 289 (354)
....|.+++.|..|.++|++.|-. .-||--+.|.-....+.++.+.+ +.+..|++.+ +|+..++.+++.+|||.
T Consensus 109 n~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~G~d~ 185 (222)
T PRK12656 109 TATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFALGAQA 185 (222)
T ss_pred EEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHcCCCE
Confidence 334678999999999999988754 55564445555556666665554 3366677776 99999999999999999
Q ss_pred EEEcHHHHHHHh
Q 018519 290 IFIGRPVVYSLA 301 (354)
Q Consensus 290 V~igr~~l~~~~ 301 (354)
+-+.-.++..+.
T Consensus 186 vTvp~~vl~~l~ 197 (222)
T PRK12656 186 VTAGPDVFEAAF 197 (222)
T ss_pred EecCHHHHHHHh
Confidence 999988777664
No 229
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.02 E-value=0.11 Score=47.64 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=104.4
Q ss_pred hHHHHHHHHHcCCcEEecCCC------CCC----HHHHHhhCC--CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEec
Q 018519 90 EYATARAASAAGTIMTLSSWS------TSS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~------~~~----~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~v 157 (354)
++.-.+.+.+.|..-.+++.- ..+ +.++++..+ ++..+|+.. .|.+.+.+..++..+.+-+ +.+-+
T Consensus 9 ~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~~-~d~e~mi~ea~~l~~~~~n-i~IKI 86 (220)
T PRK12653 9 DVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMA-TTAEGMVNDARKLRSIIAD-IVVKV 86 (220)
T ss_pred CHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 445555566666555555431 112 234444433 478889974 6777666666555555433 44433
Q ss_pred CCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEe
Q 018519 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVS 237 (354)
Q Consensus 158 d~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs 237 (354)
|.. ++| ...++.+.+. .-++....|.+.+.|..|..+|++.|-.
T Consensus 87 --P~T-------------~~G------------------l~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp- 130 (220)
T PRK12653 87 --PVT-------------AEG------------------LAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAP- 130 (220)
T ss_pred --CCC-------------HHH------------------HHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEe-
Confidence 321 011 1112222221 1123333678999999999999998765
Q ss_pred cCCcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhh
Q 018519 238 NHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 302 (354)
Q Consensus 238 ~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~ 302 (354)
.=||--+.+...+..+.++.+.++ .+..|++.+ +|+..++.+++.+|||.+-+.-..+..+..
T Consensus 131 -yvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~~vl~~l~~ 196 (220)
T PRK12653 131 -YVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPLDVAQQMIS 196 (220)
T ss_pred -ecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCHHHHHHHHc
Confidence 445544455556666666665542 255566655 999999999999999999999888877653
No 230
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.01 E-value=0.0049 Score=55.79 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
-|..+...|++.|.+...-|. .-+.+.+.+.++++.+ ++|++.-||||+.+++.+++..|||.|.+|
T Consensus 139 ~a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 139 YCLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 345667889999988442222 2234477888888877 799999999999999999989999999987
No 231
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.004 Score=56.68 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
-.+|.|++-.+.|||-++.=.-.. +.++-.+.++.+.++++.+ -+|+.+-|||++-+|+-+.|.+|||-|.|.++.+
T Consensus 31 DpVelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHh
Confidence 467889999999999998632111 1112345678888888887 8999999999999999999999999999999766
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 108 ~ 108 (256)
T COG0107 108 K 108 (256)
T ss_pred c
Confidence 4
No 232
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.00 E-value=0.018 Score=52.25 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCEEEEec-C-CcCCCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 221 EDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
.+..+....++|+|.+.. + |++.....+...+.+.++++..+. ..+|.++|||+. +++.+.+..|+|.|.+|+.
T Consensus 122 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSa 200 (220)
T PRK05581 122 LEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSA 200 (220)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChh
Confidence 333344455689887754 2 222111122334455555554432 144779999998 7898888899999999998
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
++
T Consensus 201 i~ 202 (220)
T PRK05581 201 VF 202 (220)
T ss_pred hh
Confidence 76
No 233
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=96.96 E-value=0.15 Score=46.78 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=69.3
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
..|.+++.|..+..+|++.|-. .-||--+.|...+..+.++.+.++ .+..|++.+ +|+..++.+++.+|||.+-
T Consensus 109 T~vfs~~Qa~~Aa~aGa~yIsp--yvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vT 185 (220)
T PRK12655 109 TAVYSAAQGLLAALAGAKYVAP--YVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKTPRQALDCLLAGCQSIT 185 (220)
T ss_pred eEecCHHHHHHHHHcCCeEEEe--ecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEE
Confidence 3678999999999999997754 445533445555666666666542 356566665 9999999999999999999
Q ss_pred EcHHHHHHHhhc--CHHHHHHHHHHH
Q 018519 292 IGRPVVYSLAAE--GEKGVRRVLEML 315 (354)
Q Consensus 292 igr~~l~~~~~~--G~~gv~~~l~~l 315 (354)
+.-..+..+... -..+++.+.+.|
T Consensus 186 ip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 186 LPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 998888776532 134555444443
No 234
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.95 E-value=0.062 Score=49.24 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=58.3
Q ss_pred CHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
..+..+...+ =+|.|.+=+ ..|. ....-+.+++-+.++++.... ++||.++|||. .+.+.+....|||.+.+|
T Consensus 118 p~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 118 PLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAG 195 (220)
T ss_pred CHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 4455554444 467777632 2221 112234556667777766532 48999999998 888888899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 294 RPVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 294 r~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
+.+ |. .+...+.++.+++.+
T Consensus 196 SaI-f~-----~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 196 SAI-FG-----QPDYKAVIDEMRAEL 215 (220)
T ss_pred HHH-hC-----CCCHHHHHHHHHHHH
Confidence 974 32 122444555555443
No 235
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.95 E-value=0.0051 Score=57.67 Aligned_cols=65 Identities=26% Similarity=0.498 Sum_probs=49.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCC--CHHHHHHH----HHcCcCEEEEcHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR--RGTDVFKA----LALGASGIFIGRPV 296 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~--~g~dv~ka----lalGAd~V~igr~~ 296 (354)
++.+.++|+|+|.++.. ...+.+.++.+.. ++||++.|||+ +.+++++. +.+||+++.+||.+
T Consensus 162 ~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 162 ARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 46778999999997521 2467777777655 79999999999 65555544 48999999999977
Q ss_pred HH
Q 018519 297 VY 298 (354)
Q Consensus 297 l~ 298 (354)
+.
T Consensus 231 ~~ 232 (258)
T TIGR01949 231 FQ 232 (258)
T ss_pred hc
Confidence 64
No 236
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.94 E-value=0.0099 Score=54.93 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|++.+.|-.--+.. +..+..+.+.++.+.. -.|+.+.|||||-+|+.+++.+||+-|.+|+..+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~ 106 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF 106 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence 35577888889999999885443321 3455667888887743 2499999999999999999999999999999654
No 237
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.93 E-value=0.0022 Score=59.11 Aligned_cols=77 Identities=25% Similarity=0.350 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
..+.|+...+.|++.+.|-.=-+. ..+.+...+.|.++.+.+ .+||.++||||+.+|+.+.+.+||+.|.+|+..+.
T Consensus 31 P~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 31 PVEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 456778888999999987431110 123355678888998877 69999999999999999999999999999997654
No 238
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.93 E-value=0.0084 Score=67.54 Aligned_cols=120 Identities=13% Similarity=0.175 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh-----cCCccEEE-cCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~-~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+.|..|++.|+..|++|-.+-..-....|.+-++..+..++ +.++.||+ +|.+|+.-|++..+.+|||+|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 46678889999999999875322223456666666666654 34788888 9999999999999999999994322
Q ss_pred HH--HHHHhhcC------HHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 295 PV--VYSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 295 ~~--l~~~~~~G------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
++ +..+...| ++.+.+++..+.++|...|..+|.++++..++.-+.
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 22 11122223 356789999999999999999999999988877654
No 239
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.88 E-value=0.003 Score=58.16 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 221 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
+.++.+.+. +..|++.+= =|+. .|+. ++.+.. .++|||++|||++.+|+.++..+|+++|.+|+++.+
T Consensus 147 ~~~~~~~~~-~~~ii~t~i~~dGt~--~G~d------~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 147 DAYEMLKNY-VNRFIYTSIERDGTL--TGIE------EIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred HHHHHHHHH-hCEEEEEeccchhcc--cCHH------HHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 445566665 888887542 1211 1222 333332 279999999999999999999999999999999876
No 240
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.86 E-value=0.0049 Score=58.33 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.+++..+.++|+|.|-++|-. + +.+.++.+.++ .++|++++||| +...+.+....|+|++.+|
T Consensus 190 v~t~eea~~A~~~gaD~I~ld~~~-------p---~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 190 VDSLEEALAAAEAGADILQLDKFS-------P---EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTS 258 (272)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEEC
Confidence 468999999999999999985421 1 12334443332 26999999999 8899999999999999887
Q ss_pred HHH
Q 018519 294 RPV 296 (354)
Q Consensus 294 r~~ 296 (354)
..+
T Consensus 259 ai~ 261 (272)
T cd01573 259 APY 261 (272)
T ss_pred hhh
Confidence 653
No 241
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.83 E-value=0.0071 Score=57.13 Aligned_cols=70 Identities=30% Similarity=0.324 Sum_probs=55.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcC--CccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.+.+++..+.++|+|.|-++|-. .+.+.++.+.++. ++||.++|||. ...+.+..+.|||++.+|
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETGVDVISTG 255 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEc
Confidence 3568999999999999999985522 2455555555443 78999999995 788888889999999998
Q ss_pred HHH
Q 018519 294 RPV 296 (354)
Q Consensus 294 r~~ 296 (354)
.++
T Consensus 256 al~ 258 (269)
T cd01568 256 ALT 258 (269)
T ss_pred HHH
Confidence 654
No 242
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.82 E-value=0.0063 Score=57.00 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCHHH-HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc--CcCEEEEcH
Q 018519 218 LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIGR 294 (354)
Q Consensus 218 ~~~~~-a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal--GAd~V~igr 294 (354)
.++.+ +.+..+.|+..|++..-.. .....-+.++.+.++.+.+ ++|||++|||++-+|+.+...+ |..+|.+|+
T Consensus 163 ~~~~e~~~~~~~~g~~eii~TdI~r-DGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGk 239 (262)
T PLN02446 163 LAVDEETLEFLAAYCDEFLVHGVDV-EGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGS 239 (262)
T ss_pred CCHHHHHHHHHHhCCCEEEEEEEcC-CCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEe
Confidence 34555 7999999999999844211 0001245678888888876 8999999999999999998888 578999999
Q ss_pred HHH
Q 018519 295 PVV 297 (354)
Q Consensus 295 ~~l 297 (354)
++.
T Consensus 240 Al~ 242 (262)
T PLN02446 240 ALD 242 (262)
T ss_pred eHH
Confidence 863
No 243
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.82 E-value=0.0076 Score=56.00 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=58.4
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
..+.|+...+.|+|.+.|----+. ..+.+...+.+.+|.+.+ .||.+.|||||-+|+.+++.+||+.|.+|+..
T Consensus 32 P~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a 105 (241)
T PRK14114 32 PAELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKV 105 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchh
Confidence 456788888999999887432110 123456778888888865 59999999999999999999999999999954
No 244
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.78 E-value=0.0093 Score=54.63 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=52.5
Q ss_pred hCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 229 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 229 ~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.|...|.+--.||. +.+-+.+.+..+++.++ ++||+.-||||+.+++.+++.+|||.|.+|+.+.-
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 58888888543432 33455677888887663 69999999999999999999999999999997653
No 245
>PRK12376 putative translaldolase; Provisional
Probab=96.77 E-value=0.19 Score=46.46 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=104.2
Q ss_pred hHHHHHHHHHcCCcEEecCCC-------CCCHH----HHHhhCC-CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEec
Q 018519 90 EYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~-------~~~~e----ei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~v 157 (354)
|+.-.+.+.+.|..-.+++.- ....+ ++++..+ ++..+|++ ..|.+.+.+..++..+.+-+ +.+-+
T Consensus 14 d~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~n-v~VKI 91 (236)
T PRK12376 14 DLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGEN-VYVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-eEEEE
Confidence 455555566666555554431 11233 3444444 57889986 46777666666666555533 55544
Q ss_pred CCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHh----CCCE
Q 018519 158 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQA----GAAG 233 (354)
Q Consensus 158 d~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~----G~d~ 233 (354)
|... ..|. . ....++.+.+. .-++....|.+++.+..+.++ |++.
T Consensus 92 --P~T~------------~~G~-----~----------gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~y 140 (236)
T PRK12376 92 --PITN------------TKGE-----S----------TIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAI 140 (236)
T ss_pred --CCcC------------ccch-----h----------HHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeE
Confidence 3210 0000 0 01112222221 112233357899999766655 5777
Q ss_pred EEEecCCcCCCCCCcChHHHHHHHHHHhc--CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHh
Q 018519 234 IIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 234 I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~ 301 (354)
|.. .-||-.|.+...+..+.++++.+. .++.|++.+ ||+..++.+++.+|||.|-+.-.++..+.
T Consensus 141 isp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 141 VSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred EEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 755 556655666666777777776653 256777777 99999999999999999999977776654
No 246
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.76 E-value=0.0057 Score=63.17 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=62.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH-cCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala-lGAd~V~i 292 (354)
++...+-++++.+.|+..|.+..- =|+ ..-..++.+..+.+.+ ++|||++||+.+.+|+.+++. .|||++..
T Consensus 437 ~~~~~~~~~~~~~~Gageil~t~id~DGt---~~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~a 511 (538)
T PLN02617 437 PIGAYELAKAVEELGAGEILLNCIDCDGQ---GKGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALA 511 (538)
T ss_pred CCCHHHHHHHHHhcCCCEEEEeecccccc---ccCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEE
Confidence 555678889999999999988431 111 1234677788888877 899999999999999999998 67999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
++.|-|
T Consensus 512 a~~fh~ 517 (538)
T PLN02617 512 AGIFHR 517 (538)
T ss_pred Eeeecc
Confidence 998877
No 247
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.75 E-value=0.018 Score=54.14 Aligned_cols=181 Identities=18% Similarity=0.149 Sum_probs=99.5
Q ss_pred eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC-CceEEEEeec------CChHHHHH
Q 018519 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY------KDRNVVAQ 140 (354)
Q Consensus 68 ~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~------~d~~~~~~ 140 (354)
..++.-+...|+.+. .++ +..+.+.+. |+..++.+... ++....... .+++++|... .+.....-
T Consensus 27 va~DHG~~~Gp~~gl--~~~--~~~~~~i~~--~~da~~~~~G~--~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~ 98 (264)
T PRK08227 27 LAFDHGYFQGPTTGL--ERI--DINIAPLFP--YADVLMCTRGI--LRSVVPPATNKPVVLRASGGNSILKELSNEAVAV 98 (264)
T ss_pred EECCCccccCCCccc--cCh--HHHHHHHhh--cCCEEEeChhH--HHhcccccCCCcEEEEEcCCCCCCCCCCccccee
Confidence 445666777776543 233 345666665 44444432211 111111111 3456665431 11222223
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--c--
Q 018519 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK--G-- 216 (354)
Q Consensus 141 ~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--G-- 216 (354)
-++.|.+.|++++.+++..-. ..+.+ .+. ....+.+-..+..-|.+.|- |
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs--~~E~~--------------~l~----------~l~~v~~ea~~~G~Plla~~prG~~ 152 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGS--EYEHQ--------------SIK----------NIIQLVDAGLRYGMPVMAVTAVGKD 152 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCC--HHHHH--------------HHH----------HHHHHHHHHHHhCCcEEEEecCCCC
Confidence 367788899999999885421 11100 010 01122333334445555554 2
Q ss_pred cCCH-----HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCH-HHHH----HHHHcC
Q 018519 217 VLTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALALG 286 (354)
Q Consensus 217 i~~~-----~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~----kalalG 286 (354)
+.+. --++.+.+.|||.|.+. + +. +.+.++.+++ .+||++.||=+.. .|++ .++..|
T Consensus 153 ~~~~~~~ia~aaRiaaELGADiVK~~-------y---~~-~~f~~vv~a~--~vPVviaGG~k~~~~~~L~~v~~ai~aG 219 (264)
T PRK08227 153 MVRDARYFSLATRIAAEMGAQIIKTY-------Y---VE-EGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDEG 219 (264)
T ss_pred cCchHHHHHHHHHHHHHHcCCEEecC-------C---CH-HHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 2222 23668899999999871 1 12 6777888866 7999999999963 3344 577799
Q ss_pred cCEEEEcHH
Q 018519 287 ASGIFIGRP 295 (354)
Q Consensus 287 Ad~V~igr~ 295 (354)
|.+|.+||=
T Consensus 220 a~Gv~~GRN 228 (264)
T PRK08227 220 ASGVDMGRN 228 (264)
T ss_pred Cceeeechh
Confidence 999999994
No 248
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.66 E-value=0.012 Score=54.71 Aligned_cols=73 Identities=29% Similarity=0.202 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
+.++...+.|+..+.|.---+- .+.+...+.+.++.+.+ .+||.+.|||||-+|+.+++.+||+-|.+|+..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 4556677888888876432111 13456678899998877 6999999999999999999999999999999643
No 249
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.63 E-value=0.067 Score=49.26 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHhC-CCEEEE-ecCCcC-CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAG-AAGIIV-SNHGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G-~d~I~v-s~~gg~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
++.++.....+.. +|.|.+ +-|.|. .....+..++-+.++++..+ .+.|.++|||+. +.+.++...|||.+.+||
T Consensus 125 t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~~-~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 125 TPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGINL-ETIDIAADAGANVIVAGS 202 (228)
T ss_pred CCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCCH-HHHHHHHHcCCCEEEEch
Confidence 3555555443323 555522 223332 11233445566666666543 578999999975 567788889999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018519 295 PVVYSLAAEGEKGVRRVLEMLREEFEL 321 (354)
Q Consensus 295 ~~l~~~~~~G~~gv~~~l~~l~~el~~ 321 (354)
++ |. .+...+.++.++++++.
T Consensus 203 aI-~~-----a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 203 SI-FK-----AKDRKQAIELLRESVQK 223 (228)
T ss_pred HH-hC-----CCCHHHHHHHHHHHHHH
Confidence 84 42 12244566666666654
No 250
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.63 E-value=0.053 Score=50.71 Aligned_cols=69 Identities=28% Similarity=0.410 Sum_probs=53.3
Q ss_pred HHHHHH-HHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 221 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 221 ~~a~~~-~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
+.++.+ ...++|+|+|+|.. .+.+++.+.|.++++.+ .+||++.+|+ |.+-+.+.|.. ||++.+|+-|-
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeee
Confidence 444444 57899999997742 13577888999999988 4999999998 46777777755 99999999653
No 251
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.61 E-value=0.024 Score=51.60 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCC-CC--CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.+++..+.+.|+|.|.++--..+. .. ..+..++.+.++.+.. .++||++-|||. ..++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 468889999999999999986432221 11 1233466676666542 269999999996 899999999999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
+.++
T Consensus 187 sai~ 190 (211)
T PRK03512 187 SAIT 190 (211)
T ss_pred hHhh
Confidence 9876
No 252
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.60 E-value=0.027 Score=53.42 Aligned_cols=117 Identities=23% Similarity=0.318 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh-----cCCccE-EEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPV-FLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~v-i~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
++|..|++.|+..|++|-.+...-....|++-++..+..++ +.++.| +=+|.+|+.-|++-.+..|||+|.
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~--- 222 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVN--- 222 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEE---
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhc---
Confidence 56778899999999998875322222355666666666654 235555 457889999999999999999984
Q ss_pred HHH-----HHHhhcC-------HHHHHHHHHHHHHHHHHHHHHhCCCChhhhccccee
Q 018519 295 PVV-----YSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 340 (354)
Q Consensus 295 ~~l-----~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~~l~ 340 (354)
|++ ..+...| ++.++++...+.+.|...|..+|.+.++.-++.-+.
T Consensus 223 PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiF 280 (287)
T PF04898_consen 223 PYLAYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIF 280 (287)
T ss_dssp EHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--E
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceee
Confidence 432 2222223 367889999999999999999999999988766554
No 253
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.57 E-value=0.012 Score=55.06 Aligned_cols=73 Identities=26% Similarity=0.206 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
...+.|+...+.|++.+-|--=+| +.+...+.+.+|++ + .+||-+-||||+ +++.++|.+||+-|.+|+..+
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av 115 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVF 115 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHH
Confidence 456888999999999886532222 23455778888888 6 699999999997 999999999999999999655
Q ss_pred H
Q 018519 298 Y 298 (354)
Q Consensus 298 ~ 298 (354)
.
T Consensus 116 ~ 116 (262)
T PLN02446 116 R 116 (262)
T ss_pred h
Confidence 3
No 254
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.54 E-value=0.43 Score=46.61 Aligned_cols=113 Identities=14% Similarity=0.237 Sum_probs=78.8
Q ss_pred cCCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCc----ChHHHHHHHHHHhcCCccEEEcCCCCCH------------
Q 018519 217 VLTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------ 276 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g------------ 276 (354)
..++++|+... +.|+|.+-|+. ||-+.....| -.++.|.+|++.++ ++|++.=||=..+
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~ 250 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGG 250 (347)
T ss_pred CCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcC
Confidence 35899999887 58999999875 5644211112 35778999998873 5999888876553
Q ss_pred ----------HHHHHHHHcCcCEEEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 018519 277 ----------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 330 (354)
Q Consensus 277 ----------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 330 (354)
+++.||+.+|..-|-+++-+.++... .. ..-.....+.+++.++..|+.+|...
T Consensus 251 ~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 251 DMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred CccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66889999999999999976554321 00 11223445677888888888888653
No 255
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.54 E-value=0.46 Score=46.36 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=79.5
Q ss_pred cCCHHHHHHHH-HhCCCEEEEec---CCcCCCCCCc----ChHHHHHHHHHHhcCCccEEEcCCCCCH------------
Q 018519 217 VLTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------ 276 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g------------ 276 (354)
.+++++|+... +.|+|.+-|+. ||-+.....| -.++.|.+|.+.++ ++|++.=||=..+
T Consensus 170 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~ 248 (347)
T TIGR01521 170 LTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGG 248 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhcc
Confidence 35889998876 57999999864 5643211012 35678899988872 5999999987766
Q ss_pred ----------HHHHHHHHcCcCEEEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 018519 277 ----------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 330 (354)
Q Consensus 277 ----------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 330 (354)
+++.||+.+|..-|-+++-+-++... .. ..-.....+.+++.++..|..+|...
T Consensus 249 ~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 249 EIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred cccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999966543221 11 11234445677788888888888553
No 256
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.54 E-value=0.016 Score=53.33 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=45.6
Q ss_pred HHhCCCEEEEec-CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 227 VQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 227 ~~~G~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.=.|...|.+-- .|. .++.+ ..+.++++.+ .++|+|.-|||||++++.+++..|||.|.+|+.+--
T Consensus 150 ~~~g~~~iYLEaGSGa----~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGA----YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HHTT-SEEEEE--TTS----SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HHhCCCEEEEEeCCCC----CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 456899999854 332 12332 3344555555 389999999999999999999999999999997653
No 257
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.47 E-value=0.023 Score=51.41 Aligned_cols=72 Identities=31% Similarity=0.344 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCC-----------CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLD-----------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~-----------~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
.+-|..+.++|+|.|.- .||+.-. ..-|++.+-.+|.+++ ++||+...|+..- -+=-|+++||.
T Consensus 135 v~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~v-T~PmAiaaGAs 209 (242)
T PF04481_consen 135 VQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAV-TAPMAIAAGAS 209 (242)
T ss_pred HHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchh-hHHHHHHcCCc
Confidence 45688899999999975 5664211 1245666666777777 8999999999654 45578999999
Q ss_pred EEEEcHHH
Q 018519 289 GIFIGRPV 296 (354)
Q Consensus 289 ~V~igr~~ 296 (354)
+|++|+.+
T Consensus 210 GVGVGSav 217 (242)
T PF04481_consen 210 GVGVGSAV 217 (242)
T ss_pred ccchhHHh
Confidence 99999965
No 258
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.46 E-value=0.025 Score=58.13 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCC-CC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC---EEE
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS---GIF 291 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd---~V~ 291 (354)
+.+.+++.++.+.|+|.|.++--..++ .. ..+..++.+.++.+.. ++||++-|||. .+++.+.+++||+ +|.
T Consensus 397 ~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gva 473 (502)
T PLN02898 397 CKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASNAASVMESGAPNLKGVA 473 (502)
T ss_pred CCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHHHHHHHHcCCCcCceEE
Confidence 468999999999999999875322221 11 1223467777776655 79999999995 8999999999999 999
Q ss_pred EcHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018519 292 IGRPVVYSLAAEGEKGVRRVLEMLREEFEL 321 (354)
Q Consensus 292 igr~~l~~~~~~G~~gv~~~l~~l~~el~~ 321 (354)
+++.++-. +.....++.+++.+..
T Consensus 474 v~~~i~~~------~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 474 VVSALFDQ------EDVLKATRKLHAILTE 497 (502)
T ss_pred EEeHHhcC------CCHHHHHHHHHHHHHH
Confidence 99987631 2344455555554443
No 259
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.46 E-value=0.028 Score=56.27 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCC---CCCCcChHHHHHHHHHHhc-------CCccEEEcCCCCCHHHHHHHHHcCc
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQ-------GRIPVFLDGGVRRGTDVFKALALGA 287 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~---~~~~~~~~~~l~~i~~~~~-------~~i~vi~~GGi~~g~dv~kalalGA 287 (354)
.+.+++.+|.+.|+|.|.++----+. ....+-.++.|.++++.+. ..+||++-||| +.+++...++.||
T Consensus 308 Hs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa 386 (437)
T PRK12290 308 HGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGV 386 (437)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCC
Confidence 57899999999999999984322221 1223445677777666553 26999999999 8999999999999
Q ss_pred CEEEEcHHHHH
Q 018519 288 SGIFIGRPVVY 298 (354)
Q Consensus 288 d~V~igr~~l~ 298 (354)
++|.+-|.++.
T Consensus 387 ~GVAVVSAI~~ 397 (437)
T PRK12290 387 SSLAVVRAITL 397 (437)
T ss_pred CEEEEehHhhc
Confidence 99999998763
No 260
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0092 Score=54.32 Aligned_cols=75 Identities=29% Similarity=0.382 Sum_probs=57.0
Q ss_pred ccCCHHHH----HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 Gi~~~~~a----~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
+.++-+.- +.+.++|+|+|.-|.. +..+..|.+.+.-+++.+++++-|=++|||||.+|+.+++.+||.-++
T Consensus 135 ~~Lt~ee~~~A~~i~~~aGAdFVKTSTG----f~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiG 210 (228)
T COG0274 135 GLLTDEEKRKACEIAIEAGADFVKTSTG----FSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIG 210 (228)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhc
Confidence 55544433 4668999999987642 224566777777777777778999999999999999999999977665
Q ss_pred EcH
Q 018519 292 IGR 294 (354)
Q Consensus 292 igr 294 (354)
..+
T Consensus 211 tSs 213 (228)
T COG0274 211 TSS 213 (228)
T ss_pred ccc
Confidence 554
No 261
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.44 E-value=0.016 Score=50.86 Aligned_cols=70 Identities=27% Similarity=0.346 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHH---HhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.++++.+.++|+|.|.++|- .+ +.+.++.+ ..+.++.|.++||| +.+.+.++..+|+|.+.+|
T Consensus 87 v~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 87 VENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp ESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEEC
T ss_pred cCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcC
Confidence 46899999999999999999774 23 34444444 44567999999999 5778888888999999999
Q ss_pred HHHH
Q 018519 294 RPVV 297 (354)
Q Consensus 294 r~~l 297 (354)
+...
T Consensus 156 ~~~~ 159 (169)
T PF01729_consen 156 SLTH 159 (169)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 8654
No 262
>PRK08999 hypothetical protein; Provisional
Probab=96.42 E-value=0.015 Score=55.89 Aligned_cols=76 Identities=22% Similarity=0.218 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCC-CC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
+.+.+++..|.+.|+|+|.++--.-+. .. ..+..++.+.++++.. ++||++-||| +..++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 468899999999999999985433222 11 1233467777777766 7999999999 99999999999999998765
Q ss_pred H
Q 018519 295 P 295 (354)
Q Consensus 295 ~ 295 (354)
.
T Consensus 310 ~ 310 (312)
T PRK08999 310 G 310 (312)
T ss_pred E
Confidence 3
No 263
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.36 E-value=0.76 Score=44.45 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHH-hCCCEEEEec---CCcCCC-C---CCcChHHHHHHHHHHhcCCccEEEcCCCCCH------------
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVSN---HGARQL-D---YVPATIMALEEVVKATQGRIPVFLDGGVRRG------------ 276 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs~---~gg~~~-~---~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g------------ 276 (354)
..++++|....+ .|+|.+-|+. ||-+.. + ...-.++.|.+|.+.+. ++|++.=||=..+
T Consensus 163 ~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 163 YTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGG 241 (321)
T ss_pred cCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcC
Confidence 358999998875 6999999875 665432 1 11235778999999873 5999998887444
Q ss_pred ----------HHHHHHHHcCcCEEEEcHHHHHH
Q 018519 277 ----------TDVFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 277 ----------~dv~kalalGAd~V~igr~~l~~ 299 (354)
+|+.||+.+|..-|-+++-+-.+
T Consensus 242 ~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 242 KLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred ccccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 88899999999999999966543
No 264
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.35 E-value=0.73 Score=45.04 Aligned_cols=113 Identities=15% Similarity=0.259 Sum_probs=78.9
Q ss_pred cCCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCc----ChHHHHHHHHHHhcCCccEEEcCCCCCH------------
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------ 276 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~vi~~GGi~~g------------ 276 (354)
..++++|....+ .|+|.+-|+. ||-+.....| -.++.|.+|.+.++ ++|++.=||=..+
T Consensus 172 ~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~ 250 (347)
T PRK13399 172 LTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGG 250 (347)
T ss_pred CCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcC
Confidence 357999998875 6999998864 5643211012 34678999998873 5999999987766
Q ss_pred ----------HHHHHHHHcCcCEEEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 018519 277 ----------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 330 (354)
Q Consensus 277 ----------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 330 (354)
+++.||+.+|..-|-+++-+..+... .. ..-.....+.+++-++..|+.+|...
T Consensus 251 ~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 251 KMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred CccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77899999999999999966543321 00 01233445667777888888888653
No 265
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.35 E-value=0.02 Score=51.67 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=62.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+.+.++..++.+.|+.-|-|.|.-=+++....++.. .+.+-++.++-+++-+||.|+.|+.++-..|..+|.+|..
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTs---kL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEs 268 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTS---KLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGES 268 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHH---HHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHH
Confidence 4678999999999999999887754333333333333 3333355578899999999999999999999999999998
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
++.
T Consensus 269 lmk 271 (289)
T KOG4201|consen 269 LMK 271 (289)
T ss_pred HHh
Confidence 886
No 266
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.34 E-value=0.3 Score=45.58 Aligned_cols=204 Identities=19% Similarity=0.169 Sum_probs=105.4
Q ss_pred ccceeEcCeeeccceEe-cccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHHH
Q 018519 60 DMNTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVV 138 (354)
Q Consensus 60 d~st~l~g~~l~~Pi~i-APm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~ 138 (354)
++-..+.+.....+.++ .|.+.- +.+--..+|+.++++|+.+.-+.. ... +. .++.||= -..+-.
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~--~kp----Rt--s~~sf~G---~G~~gl 68 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGA--YKP----RT--SAASFQG---LGLQGI 68 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecc--cCC----CC--CCcccCC---CCHHHH
Confidence 34444555555555444 444332 223335899999999998887532 110 01 3344541 123445
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccc-c
Q 018519 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKG-V 217 (354)
Q Consensus 139 ~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G-i 217 (354)
..+.+.+++.|...+- ++-.+. -...+.....+ -.+...+..+ ..+-+.+.+...|++...| .
T Consensus 69 ~~L~~~~~~~Gl~~~T-ev~d~~---~v~~~~e~vdi-lqIgs~~~~n-----------~~LL~~va~tgkPVilk~G~~ 132 (250)
T PRK13397 69 RYLHEVCQEFGLLSVS-EIMSER---QLEEAYDYLDV-IQVGARNMQN-----------FEFLKTLSHIDKPILFKRGLM 132 (250)
T ss_pred HHHHHHHHHcCCCEEE-eeCCHH---HHHHHHhcCCE-EEECcccccC-----------HHHHHHHHccCCeEEEeCCCC
Confidence 5555566666765443 211111 00111110000 0011111111 1244445556677777778 5
Q ss_pred CCHHHHHHH----HHhCCCEEEEecCCcCCCCCC---cChHHHHHHHHHHhcCCccEEEcCCCCCHH-------HHHHHH
Q 018519 218 LTAEDARIA----VQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGT-------DVFKAL 283 (354)
Q Consensus 218 ~~~~~a~~~----~~~G~d~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-------dv~kal 283 (354)
.++++...+ .+.|..-|++-=.|=+..... ...+..++.+++.. .+|||++=. +++. -...|+
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S-Hs~G~r~~v~~~a~AAv 209 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS-HSTGRRDLLLPAAKIAK 209 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC-CCCcccchHHHHHHHHH
Confidence 677776544 567886665532132222211 34556777777655 689999844 4333 355778
Q ss_pred HcCcCEEEEcHHH
Q 018519 284 ALGASGIFIGRPV 296 (354)
Q Consensus 284 alGAd~V~igr~~ 296 (354)
++|||+++|-+.+
T Consensus 210 A~GAdGl~IE~H~ 222 (250)
T PRK13397 210 AVGANGIMMEVHP 222 (250)
T ss_pred HhCCCEEEEEecC
Confidence 8999999999843
No 267
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.28 E-value=0.021 Score=55.43 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=53.1
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
..+.+..+.++|+|.|+|+.+.|.. ....+.+.++++..+ +++|++ |.+.+.+++.+++.+|||+|.+|
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 3567788899999999997543321 234566777777653 588887 99999999999999999999873
No 268
>PLN02417 dihydrodipicolinate synthase
Probab=96.27 E-value=0.024 Score=53.80 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=65.6
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHH
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALA 284 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----ala 284 (354)
+.|++ ..+.++.+.+.|+++|++.|+-|-. ...+. .+.+..+.+.+++++||++.=|=.+-.|+++ |-.
T Consensus 19 iD~~~--~~~~i~~l~~~Gv~Gi~~~GstGE~--~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~ 94 (280)
T PLN02417 19 FDLEA--YDSLVNMQIENGAEGLIVGGTTGEG--QLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFA 94 (280)
T ss_pred cCHHH--HHHHHHHHHHcCCCEEEECccCcch--hhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHH
Confidence 44444 3456677888999999997765421 12222 2344555666677899998777666677664 456
Q ss_pred cCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 285 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 285 lGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
+|||+|++..|+.+. ..++++.++++.+.+
T Consensus 95 ~Gadav~~~~P~y~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 95 VGMHAALHINPYYGK---TSQEGLIKHFETVLD 124 (280)
T ss_pred cCCCEEEEcCCccCC---CCHHHHHHHHHHHHh
Confidence 899999999998763 245666666665554
No 269
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.27 E-value=0.087 Score=48.13 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
++.++++...+.|.+-+++ |=+. ++++.......+..+++..+.+..+.++|||+-...- +....|||.+.+|||
T Consensus 117 ~~~~~l~~~~~~~~~~~vl--~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~-~~~~~~ad~~VvGr~ 193 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIY--HRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLK-LFKGIPVKTFIAGRA 193 (216)
T ss_pred CCHHHHHHHHcCChhhhhh--hhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHH-HHhcCCCCEEEECCc
Confidence 4666666666666666655 3111 2344443445566666655445569999999943221 223359999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018519 296 VVYSLAAEGEKGVRRVLEMLREEFEL 321 (354)
Q Consensus 296 ~l~~~~~~G~~gv~~~l~~l~~el~~ 321 (354)
++ +.+.....++.++++++.
T Consensus 194 -I~-----~a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 194 -IR-----GAADPAAAARAFKDEIAK 213 (216)
T ss_pred -cc-----CCCCHHHHHHHHHHHHHh
Confidence 44 223355667777777644
No 270
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.26 E-value=0.092 Score=46.72 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.+.+++..+.++|+|.|-++.+...-. .+..+.+.+|++.. .++-..|.|-+|...|..+|+|.|.-
T Consensus 52 PT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~-----~l~MADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 52 PTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY-----QLVMADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp -SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT-----SEEEEE-SSHHHHHHHHHTT-SEEE-
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC-----cEEeeecCCHHHHHHHHHcCCCEEEc
Confidence 488999999999999999988654211 33345566666532 44445589999999999999999854
No 271
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.26 E-value=0.031 Score=54.27 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCcEEecCCCCCCHHHHHhhC--CCceEEEEeecC-----C--hHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 018519 92 ATARAASAAGTIMTLSSWSTSSVEEVASTG--PGIRFFQLYVYK-----D--RNVVAQLVRRAERAGFKAIALTVDTPRL 162 (354)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~--~~~~~~QLy~~~-----d--~~~~~~~~~~a~~~G~~ai~i~vd~p~~ 162 (354)
.+.+.+.+.|+..++.+... ++...... ..+++++|-... + .....--++.|.+.|++++.+|+..-.
T Consensus 95 ~~i~~a~~~g~dAv~~~~G~--l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs- 171 (348)
T PRK09250 95 NIVKLAIEAGCNAVASTLGV--LEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGS- 171 (348)
T ss_pred HHHHHHHhcCCCEEEeCHHH--HHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCC-
Confidence 46677777777666544321 12211111 134566653311 1 122223367788899999999885321
Q ss_pred CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc---c--cCCH-----------HHHHHH
Q 018519 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---G--VLTA-----------EDARIA 226 (354)
Q Consensus 163 g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~---G--i~~~-----------~~a~~~ 226 (354)
..+. ..+. ....+.+-..+..-|.+.|- | +... .-++.+
T Consensus 172 -~~E~--------------~ml~----------~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRia 226 (348)
T PRK09250 172 -EESR--------------RQIE----------EISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLA 226 (348)
T ss_pred -HHHH--------------HHHH----------HHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHH
Confidence 0110 0010 01122333334455666665 2 2222 235688
Q ss_pred HHhCCCEEEEecCC---c-------CC------CCCCcChHHHHHHHHHHh-cCCccEEEcCCCCCHH-HHH----HH--
Q 018519 227 VQAGAAGIIVSNHG---A-------RQ------LDYVPATIMALEEVVKAT-QGRIPVFLDGGVRRGT-DVF----KA-- 282 (354)
Q Consensus 227 ~~~G~d~I~vs~~g---g-------~~------~~~~~~~~~~l~~i~~~~-~~~i~vi~~GGi~~g~-dv~----ka-- 282 (354)
.+.|||.|.+--.| + .. ........+.+..+.+.+ .+++||+.+||=+... |++ .+
T Consensus 227 aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~ 306 (348)
T PRK09250 227 ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVI 306 (348)
T ss_pred HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999984322 1 00 001123345566666665 3579999999999643 333 46
Q ss_pred -HHcCcCEEEEcHHHH
Q 018519 283 -LALGASGIFIGRPVV 297 (354)
Q Consensus 283 -lalGAd~V~igr~~l 297 (354)
+..||.++.+||=+.
T Consensus 307 ~i~aGa~Gv~iGRNIf 322 (348)
T PRK09250 307 NKRAGGMGLIIGRKAF 322 (348)
T ss_pred hhhcCCcchhhchhhh
Confidence 778999999999543
No 272
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.26 E-value=0.017 Score=59.27 Aligned_cols=231 Identities=19% Similarity=0.237 Sum_probs=133.5
Q ss_pred hhcccceeecccc-CCCCCCccceeEc-CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|... ...+++|++|.+- +..+..||+.|||...+ |..||.+.+++|...+++. +.++|+..
T Consensus 18 lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~ 89 (495)
T PTZ00314 18 LTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQV 89 (495)
T ss_pred CCccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHH
Confidence 4799999999754 3457889998875 56788999999998877 7799999999999999964 56777654
Q ss_pred hh----CC--Cc---eEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhccCCCCcCccccc
Q 018519 119 ST----GP--GI---RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRFTLPPFLTLKNF 184 (354)
Q Consensus 119 ~~----~~--~~---~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p----~~g-~r~~~~r~~~~~p~~~~~~~~ 184 (354)
+. .. .. ..+.+. ......+.++...+.++..+.+.-+.. ..| ...+|++..- ... ..+
T Consensus 90 ~~v~kvk~~e~g~i~dpvtv~---pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~---~~V 161 (495)
T PTZ00314 90 EEVRKVKRFENGFIMDPYVLS---PNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKS---TPV 161 (495)
T ss_pred HHHhhccccccccccCCeecC---CCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCC---CCH
Confidence 32 11 10 011122 122344556666777877766543210 000 0112222000 000 000
Q ss_pred cCCccC--c---C-cccchhh---------------------------HHHHHhhhcCCccccc-----------cc--C
Q 018519 185 QGLDLG--K---M-DEANDSG---------------------------LAAYVAGQIDRSLSWK-----------GV--L 218 (354)
Q Consensus 185 ~~~~~~--~---~-~~~~~~~---------------------------~~~~~~~~~~~~~~w~-----------Gi--~ 218 (354)
.++... . . ....... ...+.+....|....+ |+ .
T Consensus 162 ~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~ 241 (495)
T PTZ00314 162 SEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPE 241 (495)
T ss_pred HHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHH
Confidence 000000 0 0 0000000 0111111111110111 32 2
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
..+.+..+.++|+|.|.|+..-|++ .-.++.+.++++..+ +++|++ |.|.|.+++.+++.+|||+|-+|
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 3577888999999999997643322 223678888887653 577777 99999999999999999999754
No 273
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.24 E-value=0.026 Score=51.10 Aligned_cols=62 Identities=32% Similarity=0.381 Sum_probs=45.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.|++.++++.+.++|+++|+ |.+- +.+.+....+ .++|++- |+.|+.++.+|+.+|||.|=+
T Consensus 66 TVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~v~~~~~~---~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 66 TVLNPEQLRQAVDAGAQFIV-SPGL---------TPELAKHAQD---HGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred eCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHHHHH---cCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 58999999999999999994 3221 1233332222 2577666 899999999999999999744
No 274
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.19 E-value=0.77 Score=42.51 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=105.2
Q ss_pred hHHHHHHHHHcCCcEEecCCC------C-CCHHHHH----h-hCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEec
Q 018519 90 EYATARAASAAGTIMTLSSWS------T-SSVEEVA----S-TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 157 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~------~-~~~eei~----~-~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~v 157 (354)
|..-.+.+.+.|..-.+++.- . ...+++. + ..+++..+|++. .|.+.+.+..++..+.+- .+.+-+
T Consensus 14 d~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~m~~eA~~l~~~~~-nv~VKI 91 (236)
T TIGR02134 14 NLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVFA-DDLDEMEKEARYIASWGN-NVNVKI 91 (236)
T ss_pred CHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEec-CCHHHHHHHHHHHHhcCC-CeEEEE
Confidence 455555666666555555431 1 1233332 2 223678999964 677777666666666664 355544
Q ss_pred CCCCCCchhHHhhhccCCCC-cCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHH---HhC-CC
Q 018519 158 DTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAV---QAG-AA 232 (354)
Q Consensus 158 d~p~~g~r~~~~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~---~~G-~d 232 (354)
|.. +. |. .....++.+.+. .-.+....|.++..+..+. .+| ++
T Consensus 92 --P~T-------------~~~G~---------------~~l~ai~~L~~~--GI~vn~T~vfs~~Qa~~aa~A~~aG~a~ 139 (236)
T TIGR02134 92 --PVT-------------NTKGE---------------STGPLIQKLSAD--GITLNVTALTTIEQVEKVCQSFTDGVPG 139 (236)
T ss_pred --CCc-------------Ccccc---------------hHHHHHHHHHHC--CCcEEeehcCCHHHHHHHHHHHhCCCCe
Confidence 321 00 00 001112233221 1122333578888888754 589 57
Q ss_pred EEEEecCCcCCCCCCcChHHHHHHHHHHhc--CCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHh
Q 018519 233 GIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 233 ~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~ 301 (354)
.|.. .-||--|.|.-....+.++++.+. .+..|++.+ +|+..++.++..+|||.+-+.-.++..+.
T Consensus 140 yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 140 IVSV--FAGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred EEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 7765 556655666666667777766553 367788887 99999999999999999999988877664
No 275
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.19 E-value=0.026 Score=53.67 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+-+.|+++.+.++|+|.|.++|-- .+.+.++.+.+++++.+-++||| +.+.+..+..+|+|.+.+|.+
T Consensus 203 Ev~tleea~~a~~agaDiImLDnms----------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~gal 271 (290)
T PRK06559 203 EVESLAAAEEAAAAGADIIMLDNMS----------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSL 271 (290)
T ss_pred ECCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 3478999999999999999997732 35566666666668899999999 467777777799999999986
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
..
T Consensus 272 th 273 (290)
T PRK06559 272 TH 273 (290)
T ss_pred cc
Confidence 54
No 276
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.18 E-value=0.39 Score=44.28 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=89.5
Q ss_pred HHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC-CCCchhHHhhhccCCCCcCccccccCCccCcCc
Q 018519 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (354)
Q Consensus 115 eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p-~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~ 193 (354)
+.+++...-+.=+.|.. .+++. .++...++|++.|.+|.... ....|
T Consensus 52 ~~ir~~t~~~~DvHLMv-~~P~~---~i~~~~~aGad~it~H~Ea~~~~~~~---------------------------- 99 (229)
T PRK09722 52 SQVKKLASKPLDVHLMV-TDPQD---YIDQLADAGADFITLHPETINGQAFR---------------------------- 99 (229)
T ss_pred HHHHhcCCCCeEEEEEe-cCHHH---HHHHHHHcCCCEEEECccCCcchHHH----------------------------
Confidence 45554333445566665 45554 45666788999999998732 10000
Q ss_pred ccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC---CccEE
Q 018519 194 EANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVF 268 (354)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~i~vi 268 (354)
-+..+.+.-....+.+.--+..+.....++ =+|.|.|=. ..|. ....-+..++-+.++++.... ++.|-
T Consensus 100 -----~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie 173 (229)
T PRK09722 100 -----LIDEIRRAGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIE 173 (229)
T ss_pred -----HHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 011111111112222221145555555554 378887632 2221 112334555566666655432 47799
Q ss_pred EcCCCCCHHHHHHHHHcCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 269 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 269 ~~GGi~~g~dv~kalalGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
+||||. .+-+.+..++|||.+.+|+..+|.. .+...+.++.+++.++
T Consensus 174 VDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 174 VDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred EECCCC-HHHHHHHHHcCCCEEEEChHHHcCC----CCCHHHHHHHHHHHHH
Confidence 999998 4566678889999999998777731 1224455666665544
No 277
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.13 E-value=0.03 Score=53.53 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHH----HHHHcCcCEEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~----kalalGAd~V~i 292 (354)
.+.+..+.+.|+++|.+.|+-|-. ...+. .+.+..+++.+++++||++--|-.+-.|++ +|-++|||+|++
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~--~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEP--GSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMV 101 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCccc--ccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEE
Confidence 355667788999999996654421 12222 234555566667789999776666666665 345589999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
..|+.+.. .++++.+++..+.+.
T Consensus 102 ~pP~y~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 102 IVPYYNKP---NQEALYDHFAEVADA 124 (294)
T ss_pred cCccCCCC---CHHHHHHHHHHHHHh
Confidence 99987742 456666666666554
No 278
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.12 E-value=0.034 Score=52.74 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
+-+.+++..+.++|+|.|.++|-. .+.+.++.+.++++.++-++||| +.+.+.++.++|+|.+.+|.+.
T Consensus 201 v~tleea~ea~~~gaDiI~LDn~s----------~e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 201 VDTLDQLEEALELGVDAVLLDNMT----------PDTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred eCCHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 469999999999999999997742 35566666666668889999999 4677777777999999999865
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
.
T Consensus 270 h 270 (281)
T PRK06106 270 H 270 (281)
T ss_pred c
Confidence 4
No 279
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.11 E-value=0.03 Score=57.89 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCc-CC-CCCCcChHHHHHHHHHHhcCCccEEEcCCCCCH-----------HHHHHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGA-RQ-LDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALA 284 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg-~~-~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g-----------~dv~kala 284 (354)
...+.|++..+.|||-|.+-.--+ +. ...-.+.++.+.++.+.+ .+|+-+-||||+- +++.+.|.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 356788999999999998754322 11 112234578888888877 7999999999998 55889999
Q ss_pred cCcCEEEEcHHHHH
Q 018519 285 LGASGIFIGRPVVY 298 (354)
Q Consensus 285 lGAd~V~igr~~l~ 298 (354)
+|||-|.||+..+.
T Consensus 346 ~GadkV~i~s~Av~ 359 (538)
T PLN02617 346 SGADKISIGSDAVY 359 (538)
T ss_pred cCCCEEEEChHHHh
Confidence 99999999996654
No 280
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.08 E-value=0.04 Score=51.41 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=54.2
Q ss_pred ccCCH-HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc--CcCEEEE
Q 018519 216 GVLTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFI 292 (354)
Q Consensus 216 Gi~~~-~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal--GAd~V~i 292 (354)
++... +.++++.+. +..|++..-.. ...-.-+.++.+.++.+.+ ++|||++||+.+-+|+.+.-.+ |...+.+
T Consensus 156 ~~~~~~e~~~~~~~~-~~~il~TdI~r-DGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~~~~g~~~aIv 231 (253)
T TIGR02129 156 DLELNAETLEELSKY-CDEFLIHAADV-EGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDELSKGKVDLTI 231 (253)
T ss_pred CCChHHHHHHHHHhh-CCEEEEeeecc-cCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhcCCCCcEEe
Confidence 43344 556677667 99998844210 0001345678888888876 8999999999999999988555 5556778
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|+++.
T Consensus 232 G~Alf 236 (253)
T TIGR02129 232 GSALD 236 (253)
T ss_pred eehHH
Confidence 88643
No 281
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.02 E-value=0.026 Score=56.18 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=52.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.+..+.++|+|.|+|+...|+ +....+.+.++++..+ +++ ++.|+|.|.+++.+++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 47888999999999998654332 3445567778877653 444 55688999999999999999999877
No 282
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.98 E-value=0.027 Score=57.12 Aligned_cols=238 Identities=21% Similarity=0.285 Sum_probs=132.0
Q ss_pred hcccceeeccccC-CCCCCccceeEc-CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH-
Q 018519 42 AFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (354)
Q Consensus 42 ~~~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (354)
.||++.|+|.... ..+++|++|.+- +.+++.||+-|||...+ +..++.+.++.|...++.. ++++|+-.
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 6999999997552 446899999986 78899999999998766 7788888999888777764 34554332
Q ss_pred ---hhCC--CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC----CCC-chhHHhhhcc---------------
Q 018519 119 ---STGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP----RLG-RREADIKNRF--------------- 173 (354)
Q Consensus 119 ---~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p----~~g-~r~~~~r~~~--------------- 173 (354)
+... ....-++..-.......+.++...+.+++.+.+.=+.. ..| -..+|+....
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~~~ 154 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKPVSEVMTREEV 154 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCCCC
Confidence 2111 11111111111223345566667777777765542210 000 0112221000
Q ss_pred -CCCCcCccccc----cCCccC--c-Ccc-cc---hhhHHHHHhhhcCCcc------ccc-----cc--CCHHHHHHHHH
Q 018519 174 -TLPPFLTLKNF----QGLDLG--K-MDE-AN---DSGLAAYVAGQIDRSL------SWK-----GV--LTAEDARIAVQ 228 (354)
Q Consensus 174 -~~p~~~~~~~~----~~~~~~--~-~~~-~~---~~~~~~~~~~~~~~~~------~w~-----Gi--~~~~~a~~~~~ 228 (354)
.+++....... ...... . .++ .. .-....+++....|.. .|. ++ .+.+.+..+.+
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~ 234 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEALVK 234 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHHHH
Confidence 00000000000 000000 0 000 00 0001111111111111 111 22 24578889999
Q ss_pred hCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 229 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 229 ~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+|+|.|.|..+-|+ ....++.+.++++... ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 235 aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 235 AGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred hCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 99999999763332 2345677888877643 688888 99999999999999999999766
No 283
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.97 E-value=0.67 Score=45.48 Aligned_cols=209 Identities=17% Similarity=0.181 Sum_probs=99.7
Q ss_pred eeEcC-eeeccceEecccccccccCChh---h--HHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChH
Q 018519 63 TTVLG-FKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (354)
Q Consensus 63 t~l~g-~~l~~Pi~iAPm~~~~l~~~~~---e--~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~ 136 (354)
.+|.+ .++++-|+.+||+.. +...+| + +..-+.-++ |+.+++++....+.+ ....+. -.-+|.....+
T Consensus 5 ~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~--~~~~~~--~~~~~~d~~i~ 78 (353)
T cd04735 5 FTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPS--GIGFEG--GFSADDDSDIP 78 (353)
T ss_pred EEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECcc--cCcCCC--CceecChhhhH
Confidence 56777 999999999999633 233333 2 222122222 466666654332221 111121 12233333345
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCc--cCcCcccchhhHHHHHhhhcCCcccc
Q 018519 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD--LGKMDEANDSGLAAYVAGQIDRSLSW 214 (354)
Q Consensus 137 ~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w 214 (354)
.++++++.+.+.|++.+ +-+..+ |......-.....+ ..+..+.... ...+..-...++.++++.
T Consensus 79 ~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~~~~--~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~-------- 145 (353)
T cd04735 79 GLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPGGDV--VSPSAIAAFRPGAHTPRELTHEEIEDIIDA-------- 145 (353)
T ss_pred HHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCCCce--ecCCCCcccCCCCCCCccCCHHHHHHHHHH--------
Confidence 66777788888898753 333222 21100000000000 0000000000 000000112223444332
Q ss_pred cccCCHHHHHHHHHhCCCEEEEec-CCcC--C----------CCCCcC-------hHHHHHHHHHHhc----CCccEEE-
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSN-HGAR--Q----------LDYVPA-------TIMALEEVVKATQ----GRIPVFL- 269 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~--~----------~~~~~~-------~~~~l~~i~~~~~----~~i~vi~- 269 (354)
..+-|++|.++|+|+|.|+. ||.- | -.+|-+ ..+.+..|+++++ .+++|..
T Consensus 146 ----f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R 221 (353)
T cd04735 146 ----FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYR 221 (353)
T ss_pred ----HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEE
Confidence 34778899999999999943 3310 1 112222 2456667777765 3555443
Q ss_pred -------cCCCC--CHHHHHHHHH-cCcCEEEEcH
Q 018519 270 -------DGGVR--RGTDVFKALA-LGASGIFIGR 294 (354)
Q Consensus 270 -------~GGi~--~g~dv~kala-lGAd~V~igr 294 (354)
.||+. ...++++.|. .|+|.+-+..
T Consensus 222 ~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 222 FSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred ECcccccCCCCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 45654 2345567775 7999999865
No 284
>PRK06852 aldolase; Validated
Probab=95.95 E-value=0.091 Score=50.39 Aligned_cols=68 Identities=28% Similarity=0.306 Sum_probs=47.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCH-HHHH----HHHH-cCcCEEEEcHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVF----KALA-LGASGIFIGRP 295 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~----kala-lGAd~V~igr~ 295 (354)
++.+.+.|||.|.+--.+ +.+....+.+.++.+.+ +++||++.||=+.. .|++ .++. .||.+|.+||=
T Consensus 194 aRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 194 AGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred HHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechh
Confidence 568899999999983211 01112346677777765 37999999999963 3444 4666 89999999994
No 285
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.95 E-value=0.039 Score=52.59 Aligned_cols=71 Identities=27% Similarity=0.317 Sum_probs=56.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+-+.++++.+.++|+|.|.++|-. .+.+.++.+.+++++.+-++||| |.+.+.++..+|+|.+.+|.+
T Consensus 211 Evetleea~eA~~aGaDiImLDnms----------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 211 EVETLAQLETALAHGAQSVLLDNFT----------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred EcCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 3468999999999999999997742 34556666666667899999999 466777777799999999986
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
..
T Consensus 280 th 281 (294)
T PRK06978 280 TK 281 (294)
T ss_pred cc
Confidence 43
No 286
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.90 E-value=0.052 Score=51.23 Aligned_cols=102 Identities=19% Similarity=0.340 Sum_probs=66.9
Q ss_pred cccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcC-hHHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHc
Q 018519 211 SLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALAL 285 (354)
Q Consensus 211 ~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alal 285 (354)
.+.|++ ..+.+..+.+.|+++|.+.|+-|-...-... -.+.+..+++.+++++||++.-|=.+-.++++ |-.+
T Consensus 14 ~iD~~~--~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~ 91 (281)
T cd00408 14 EVDLDA--LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEA 91 (281)
T ss_pred CcCHHH--HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHc
Confidence 345555 4566778889999999997765532111111 13345566666667899988777666666654 3348
Q ss_pred CcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 286 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 286 GAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
|||+|++..|+.+. ..++++.+++..+.+
T Consensus 92 Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 92 GADGVLVVPPYYNK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CCCEEEECCCcCCC---CCHHHHHHHHHHHHh
Confidence 99999999998775 245666666655554
No 287
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=95.89 E-value=0.044 Score=52.49 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=60.0
Q ss_pred ccCCHHHHHHHHH------hCCCEEEEecC--CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCc
Q 018519 216 GVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 287 (354)
Q Consensus 216 Gi~~~~~a~~~~~------~G~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGA 287 (354)
-+-+.++++.+.+ +|+|.|.++|- ... -...+.+.+.+..+.+++++++-++|||. .+.+.++..+|+
T Consensus 209 Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~~~---~~~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA~tGV 284 (308)
T PLN02716 209 ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLE---NGDVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIGQTGV 284 (308)
T ss_pred EECCHHHHHHHHHhcccccCCCCEEEeCCCccccc---ccCCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHHHcCC
Confidence 3568999999999 99999999885 211 12235566777777666688999999994 677777777999
Q ss_pred CEEEEcHHHH
Q 018519 288 SGIFIGRPVV 297 (354)
Q Consensus 288 d~V~igr~~l 297 (354)
|.+.+|.+..
T Consensus 285 D~Is~Galth 294 (308)
T PLN02716 285 TYISSGALTH 294 (308)
T ss_pred CEEEeCcccc
Confidence 9999998653
No 288
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.89 E-value=0.039 Score=53.16 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHHH----HHcCcCEEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ka----lalGAd~V~i 292 (354)
.+.+..+++.|+++|.+.|+-|-. ...+. .+.+..+++.+++++|||+--|=.+-.|+++. -.+|||+|++
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~--~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGEC--ATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccc--hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 455667889999999997764421 11222 23445566667778999987765666676643 3479999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
-.|+.+.. .++++.++++.+.+.
T Consensus 110 ~~P~y~~~---~~~~l~~yf~~va~a 132 (309)
T cd00952 110 GRPMWLPL---DVDTAVQFYRDVAEA 132 (309)
T ss_pred CCCcCCCC---CHHHHHHHHHHHHHh
Confidence 99987643 356666666555543
No 289
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.89 E-value=0.043 Score=52.06 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+-+.+++..+.++|+|.|.++|-. .+.+.++.+.++++..+.++||| +...+.++..+|+|.+.+|.+
T Consensus 199 Ev~slee~~ea~~~gaDiImLDn~s----------~e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 199 EVDRLDQIEPVLAAGVDTIMLDNFS----------LDDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred EeCCHHHHHHHHhcCCCEEEECCCC----------HHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 4579999999999999999997742 34566666666667889999999 577777777899999999986
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
..
T Consensus 268 th 269 (281)
T PRK06543 268 TH 269 (281)
T ss_pred cc
Confidence 53
No 290
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.88 E-value=0.047 Score=52.43 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~i 292 (354)
.+.+..+.+.|+|+|.+.|+.|-. ...+. .+.+..+++.+.+++|||+.-|- +-.++++ |-.+|||+|++
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~--~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEF--FSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCc--ccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEE
Confidence 345667788999999996654421 12222 23455566777778999987664 5666654 33489999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
-.|+++.. .++++.+++..+.+.
T Consensus 108 ~pP~y~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 108 LPPYLTEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCCCCCCC---CHHHHHHHHHHHHHh
Confidence 99987632 456777777666654
No 291
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.88 E-value=1.1 Score=45.91 Aligned_cols=205 Identities=21% Similarity=0.305 Sum_probs=105.1
Q ss_pred eccccCC-CCCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHH-------HHHhh
Q 018519 49 RPRILID-VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE-------EVAST 120 (354)
Q Consensus 49 ~pr~l~~-~~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e-------ei~~~ 120 (354)
-|++.+. ...+.++|.|--+.=..|+++|.|+=.+. +..+..+++++|-=.-+......+.| .+...
T Consensus 11 aPklvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtTV-----dp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~ 85 (717)
T COG4981 11 APKLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTTV-----DPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSL 85 (717)
T ss_pred CcceEecCCCcEEEeechhhhcCCCCeeecCCCCCcC-----CHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhc
Confidence 4666553 45566666653333345999999986663 45788888888865555444333333 22211
Q ss_pred -CCC-ceEEE-EeecCChHH------HHHHHHHHHHcCC--CEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCcc
Q 018519 121 -GPG-IRFFQ-LYVYKDRNV------VAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (354)
Q Consensus 121 -~~~-~~~~Q-Ly~~~d~~~------~~~~~~~a~~~G~--~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~ 189 (354)
.|+ ..-|+ +|. |+-. -.++++.+.+.|+ +.++|..+.|-. +
T Consensus 86 lepG~t~qfN~ifl--dpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~l-----e--------------------- 137 (717)
T COG4981 86 LEPGRTAQFNSIFL--DPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSL-----E--------------------- 137 (717)
T ss_pred cCCCccceeeEEEe--chHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcH-----H---------------------
Confidence 121 11122 232 3322 2356788888886 556666555531 0
Q ss_pred CcCcccchhhHHHHHhhh---cCCccccc-ccCCHHHH----HHHHHhCCCEEEEecCCcCCCCCCcChHH----HHHHH
Q 018519 190 GKMDEANDSGLAAYVAGQ---IDRSLSWK-GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIM----ALEEV 257 (354)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~---~~~~~~w~-Gi~~~~~a----~~~~~~G~d~I~vs~~gg~~~~~~~~~~~----~l~~i 257 (354)
...++++.+ ..+-+.+| | +.|.. ..|.+.----|+++=.|||. +|..+|+ .|-..
T Consensus 138 ---------~A~ElI~~L~~~G~~yv~fKPG--tIeqI~svi~IAka~P~~pIilq~egGra--GGHHSweDld~llL~t 204 (717)
T COG4981 138 ---------EAVELIEELGDDGFPYVAFKPG--TIEQIRSVIRIAKANPTFPIILQWEGGRA--GGHHSWEDLDDLLLAT 204 (717)
T ss_pred ---------HHHHHHHHHhhcCceeEEecCC--cHHHHHHHHHHHhcCCCCceEEEEecCcc--CCccchhhcccHHHHH
Confidence 012222222 12222333 3 22222 12222222334444344432 1222222 12222
Q ss_pred HHHh--cCCccEEEcCCCCCHHHHHHHHH------cC-----cCEEEEcHHHHHH
Q 018519 258 VKAT--QGRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 299 (354)
Q Consensus 258 ~~~~--~~~i~vi~~GGi~~g~dv~kala------lG-----Ad~V~igr~~l~~ 299 (354)
...+ .++|.+++-|||.++.|...+|- .| .|++.+|+..|..
T Consensus 205 Ys~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 205 YSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred HHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 2222 24799999999999999998772 33 5999999987653
No 292
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.88 E-value=0.74 Score=42.29 Aligned_cols=94 Identities=16% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
+..+..+..++ =+|.|.|=. ..|. ....-+.+++-+.++++.... ++.|-+||||. .+.+-+..+.|||.+.+
T Consensus 121 T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 121 TPVDILDWVLP-ELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVA 198 (223)
T ss_pred CCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 34555555544 478877632 2221 122345566666666665422 47799999997 55666777899999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
|+. +|. .+...+.++.+++.+
T Consensus 199 GSa-iF~-----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 199 GSA-IFN-----APDYAQVIAQMRAAV 219 (223)
T ss_pred Chh-hhC-----CCCHHHHHHHHHHHH
Confidence 997 552 222455566666543
No 293
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.87 E-value=0.047 Score=52.01 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh-HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEEEcH
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGR 294 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~igr 294 (354)
...+..+.+.|+++|++.|+-|-...-.... .+.+..+++.+.+++|||+.-|- +-.++++ |-.+|||++++-.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 4566678899999999976644211111111 23455566666778999997775 6667664 3348999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 295 PVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 295 ~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
|+.+.. .++++.++++.+.+.
T Consensus 103 P~y~~~---~~~~i~~~f~~v~~~ 123 (289)
T cd00951 103 PYLTEA---PQEGLYAHVEAVCKS 123 (289)
T ss_pred CCCCCC---CHHHHHHHHHHHHhc
Confidence 987632 456666666666553
No 294
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.87 E-value=0.039 Score=52.57 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHH---hcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
-+-+.+++..+.++|+|.|.++|-. .+.+.++.+. .+.++.+.++||| +.+.+.++..+|+|.+.+
T Consensus 205 Ev~tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 205 EVDSLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLLESSGGL-TLDTAAAYAETGVDYLAV 273 (289)
T ss_pred EcCCHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEe
Confidence 3469999999999999999997631 2334444333 3457889999999 467777777799999999
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|.++.
T Consensus 274 galt~ 278 (289)
T PRK07896 274 GALTH 278 (289)
T ss_pred Chhhc
Confidence 98764
No 295
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=95.84 E-value=0.042 Score=52.46 Aligned_cols=71 Identities=25% Similarity=0.262 Sum_probs=56.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
-+-+.++++.+.++|+|.|.++|-. .+.+.++.+.+++++.+-++||| +...+.++-.+|+|.+.+|.+
T Consensus 214 Ev~sleea~ea~~~gaDiI~LDn~s----------~e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~gal 282 (296)
T PRK09016 214 EVENLDELDQALKAGADIIMLDNFT----------TEQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGAL 282 (296)
T ss_pred EeCCHHHHHHHHHcCCCEEEeCCCC----------hHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 3468999999999999999987631 25566666666668999999999 467777777799999999986
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
.-
T Consensus 283 th 284 (296)
T PRK09016 283 TK 284 (296)
T ss_pred cc
Confidence 43
No 296
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=0.048 Score=52.32 Aligned_cols=96 Identities=24% Similarity=0.351 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHH----HHHHcCcCEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIF 291 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~----kalalGAd~V~ 291 (354)
..+.++.+++.|+|+|++.|+.|-. ...+. .+.+..+++.+++++|||+--|=.+-.+++ +|-.+|||+++
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~--~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGES--PTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccc--hhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEE
Confidence 3456677899999999997765421 11222 234566667777899998855555444444 34448999999
Q ss_pred EcHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 292 IGRPVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 292 igr~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
+-.|+++.. .++++.+.+..+.+..
T Consensus 105 ~v~PyY~k~---~~~gl~~hf~~ia~a~ 129 (299)
T COG0329 105 VVPPYYNKP---SQEGLYAHFKAIAEAV 129 (299)
T ss_pred EeCCCCcCC---ChHHHHHHHHHHHHhc
Confidence 999998753 3466655555555443
No 297
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.82 E-value=1.1 Score=44.24 Aligned_cols=210 Identities=21% Similarity=0.206 Sum_probs=111.1
Q ss_pred CCCCCCccceeEcCeeec--cc-eEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEe
Q 018519 54 IDVSKIDMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLY 130 (354)
Q Consensus 54 ~~~~~vd~st~l~g~~l~--~P-i~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy 130 (354)
+....-++.+.+.+..+. .| ++++|... -..+.-...|+.+++.|+.+.-... .. -+. .|+.||
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~--~k----pRt--sp~~f~-- 164 (360)
T PRK12595 98 RKKKPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGA--FK----PRT--SPYDFQ-- 164 (360)
T ss_pred CccCCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEccc--cC----CCC--CCcccc--
Confidence 344444555555554442 34 45555332 2233346888889999988776421 00 001 334454
Q ss_pred ecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCC-CcCccccccCCccCcCcccchhhHHHHHhhhcC
Q 018519 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP-PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (354)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (354)
.-..+....+.+.+++.|...+.==.|. +.-+.-..+ .+ -.++..++.+ ..+-+.+.+...
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t~v~d~-----~~~~~l~~~-vd~lkI~s~~~~n-----------~~LL~~~a~~gk 226 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVISEIVNP-----ADVEVALDY-VDVIQIGARNMQN-----------FELLKAAGRVNK 226 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEEeeCCH-----HHHHHHHHh-CCeEEECcccccC-----------HHHHHHHHccCC
Confidence 2234555555566677776654311111 111111111 01 0011111111 134445556667
Q ss_pred Cccccccc-CCHHHHHHH----HHhCCCEEEEecCCcCCCC---CCcChHHHHHHHHHHhcCCccEEEcCCCCCH----H
Q 018519 210 RSLSWKGV-LTAEDARIA----VQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRG----T 277 (354)
Q Consensus 210 ~~~~w~Gi-~~~~~a~~~----~~~G~d~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g----~ 277 (354)
|++...|. .+.++...+ .+.|.+-|++--+|-+... .....+..++.+++.. .+||+.|.+=..| .
T Consensus 227 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~ 304 (360)
T PRK12595 227 PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLL 304 (360)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhH
Confidence 77777786 588877654 4678866666433433222 1224677888888755 6899997543333 1
Q ss_pred --HHHHHHHcCcCEEEEcHHH
Q 018519 278 --DVFKALALGASGIFIGRPV 296 (354)
Q Consensus 278 --dv~kalalGAd~V~igr~~ 296 (354)
-...|+++|||+++|-+.+
T Consensus 305 ~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 305 LPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred HHHHHHHHHcCCCeEEEEecC
Confidence 3345788999999999866
No 298
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.57 E-value=0.25 Score=45.40 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=26.5
Q ss_pred hHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 199 GLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 199 ~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
.++.+++....|.+.=-||-++.||.++++.|+|+|-|
T Consensus 166 ~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp HHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 45666666655655544899999999999999999987
No 299
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.55 E-value=0.29 Score=45.98 Aligned_cols=117 Identities=20% Similarity=0.160 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccccc
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGV 217 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi 217 (354)
..++++..++.|+++|-+..+.-..+. ....+..+.+.+..|.+..+=|
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f~g-------------------------------~~~~l~~v~~~v~iPvl~kdfi 120 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFFQG-------------------------------SLEYLRAARAAVSLPVLRKDFI 120 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccCCC-------------------------------CHHHHHHHHHhcCCCEEeeeec
Confidence 456678888999999977655332110 1122344444444565554446
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.++..+..+.++|||+|.+...- + .+.++..+.+..+.+ .+.++++ +++.+++.+|..+|||.+++..
T Consensus 121 ~~~~qi~~a~~~GAD~VlLi~~~---l--~~~~l~~li~~a~~l--Gl~~lve--vh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 121 IDPYQIYEARAAGADAILLIVAA---L--DDEQLKELLDYAHSL--GLDVLVE--VHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEEecc---C--CHHHHHHHHHHHHHc--CCeEEEE--eCCHHHHHHHHHcCCCEEEECC
Confidence 78889999999999999984321 1 123444444444444 4666665 7899999999999999999873
No 300
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.53 E-value=0.06 Score=48.86 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
...+.|+...++||++|-+...-+. . ....+.+..+++.+ ++||+.-|+|++..++-.++.+|||+|.++.+.
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 4568899999999999987432211 1 12235666677666 799999999999999999999999999988643
No 301
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.52 E-value=0.076 Score=48.66 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=55.7
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH--cCcCEEEEcHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPV 296 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala--lGAd~V~igr~~ 296 (354)
..+.|+...+.|+|.+.|--=-+. .+.+...+.+.++.+. +|+.+.|||||.+|+.+++. .||+-|.+|++.
T Consensus 38 P~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 38 PDDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred HHHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 457778888999999987432221 1345667888888874 58999999999999998866 279999999965
Q ss_pred H
Q 018519 297 V 297 (354)
Q Consensus 297 l 297 (354)
+
T Consensus 112 ~ 112 (221)
T TIGR00734 112 L 112 (221)
T ss_pred h
Confidence 3
No 302
>PLN02858 fructose-bisphosphate aldolase
Probab=95.50 E-value=1.8 Score=49.87 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHH-hCCCEEEEec---CCcCCCCCCcChHHHHHHHHHHhc-CCccEEEcCCCCCH-HHHHHHHHcCcCEE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRG-TDVFKALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~GGi~~g-~dv~kalalGAd~V 290 (354)
..++++|+...+ .|+|.+-|+- ||-+....-.-.++.|.+|++.+. .++|++.=||=..+ +++.||+.+|..-|
T Consensus 1249 ~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1249 LTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKF 1328 (1378)
T ss_pred CCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 357899988775 6999999864 664421111235788999999884 35898887766555 55668999999999
Q ss_pred EEcHHHHHHHh----hcC----HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 291 FIGRPVVYSLA----AEG----EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 291 ~igr~~l~~~~----~~G----~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
-+++-+.++.. ..+ ..-.....+.+++-++..|+.+|..
T Consensus 1329 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1329 NVNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred EeCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997655432 111 1123445567777888888888754
No 303
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.49 E-value=0.31 Score=47.27 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhC--CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.|-+..+.++| +|.|+|+-.-|+ ....++.+..+++..+ -+.+.-|.|-|++++..++.+|||+|-+|
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p--~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP--EHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC--CCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 345666777774 999999764333 2334567777777653 35677788999999999999999999877
No 304
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.49 E-value=0.08 Score=50.61 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=62.0
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh-HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~ig 293 (354)
....+..+++.|+|+|.+.|+.|-...-...- .+.+..+++.+++++|||+.=|- +-.++++ |-.+|||++++-
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~ 106 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLL 106 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEEC
Confidence 34566778899999999977654221111111 23445566667778999887663 5555543 334899999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 294 RPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 294 r~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
.|+++.. .++++.++++.+.+.
T Consensus 107 pP~y~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 107 PPYLING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCCCCCC---CHHHHHHHHHHHHhc
Confidence 9987642 356666666666554
No 305
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.48 E-value=0.13 Score=52.13 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=49.3
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.||.+++|+..+.+ |+|++.| |+.+-..+.+...+.++.. ..+.| .|+++.+|+..+..+|||++++=
T Consensus 217 SGI~t~~d~~~~~~-~~davLi----G~~lm~~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 217 SGIYTHAQVRELSP-FANGFLI----GSSLMAEDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred CCCCCHHHHHHHHh-cCCEEEE----CHHHcCCCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEEeeE
Confidence 39999999999865 7999988 3333334444555554432 12222 68999999999999999999883
No 306
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.47 E-value=0.72 Score=44.90 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcC---C----------CCCCcC-------hHHHHHHHHHHhcCCccEEEc--------
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGRIPVFLD-------- 270 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~i~vi~~-------- 270 (354)
-.+-|+++.++|.|+|-|++..|+ | -.+|-+ ..+.+.+|+++++++++|.+.
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 346788999999999999432221 1 112222 245677778877767777652
Q ss_pred CCCCCHH---HHHHHHH-cCcCEEEEc
Q 018519 271 GGVRRGT---DVFKALA-LGASGIFIG 293 (354)
Q Consensus 271 GGi~~g~---dv~kala-lGAd~V~ig 293 (354)
+|. +.+ ++++.|+ +|.|.+-+.
T Consensus 231 ~g~-~~eea~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 231 GGF-TEEDALEVVEALEEAGVDLVELS 256 (338)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCEEEec
Confidence 444 444 4466666 799999764
No 307
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.44 E-value=0.11 Score=48.05 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=51.9
Q ss_pred HHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhccCCC--CcCccccccCCccCcCcccchhhHHHHHhhhcCCccc
Q 018519 139 AQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (354)
Q Consensus 139 ~~~~~~a~~~---G~~ai~i~vd~p~~g~r~~~~r~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (354)
.+.++++++. |+..+-++.|.|+..+|..++.-...+| .-++.. .++ .+..-++.+++....|.+.
T Consensus 110 ~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi-------~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 110 IETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGL-------LNPYNLRIIIERADVPVIV 180 (248)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCC-------CCHHHHHHHHHhCCCcEEE
Confidence 3445555554 7777767777777666665553222233 111110 111 1122244455443345444
Q ss_pred ccccCCHHHHHHHHHhCCCEEEE
Q 018519 214 WKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 214 w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
=.||.+++|+.++.+.|+|++.|
T Consensus 181 egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 181 DAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEE
Confidence 44899999999999999999998
No 308
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.43 E-value=0.1 Score=48.66 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=56.9
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
..+.|+...++||++|.|-.-+.+ -..+++.|..+++.+ ++||+.-..|-+..++.++.++|||+|.+=-.+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~----F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSY----FGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCc----CCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 457788899999999988543211 122357788888877 899999999999999999999999999765433
No 309
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.42 E-value=0.54 Score=43.29 Aligned_cols=78 Identities=6% Similarity=-0.078 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
+..+..+..++. +|.|.|=. ..|. ....-+..++-+.++++.... ++.|-+||||. .+-+.+..++|||.+.+
T Consensus 129 Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~ 206 (228)
T PRK08091 129 TPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVS 206 (228)
T ss_pred CCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEE
Confidence 456666656553 88887632 2221 111234455556666555422 57799999997 55666778899999999
Q ss_pred cHHHHH
Q 018519 293 GRPVVY 298 (354)
Q Consensus 293 gr~~l~ 298 (354)
|+. +|
T Consensus 207 GSa-lF 211 (228)
T PRK08091 207 GSA-LF 211 (228)
T ss_pred Chh-hh
Confidence 987 55
No 310
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.38 E-value=0.08 Score=50.36 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=61.0
Q ss_pred CHHHHHHHHHh-CCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHH----HHHHcCcCEE
Q 018519 219 TAEDARIAVQA-GAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGI 290 (354)
Q Consensus 219 ~~~~a~~~~~~-G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~----kalalGAd~V 290 (354)
....++.+.+. |+++|.+.|+-|-. ...+. .+.+..+++.+++++|||+-=|-.+-.|++ .|..+|||+|
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstGE~--~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v 100 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTGEG--FLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAI 100 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCcCc--ccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34566677889 99999997775422 12222 234555566667789999844434444444 3345899999
Q ss_pred EEcHHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 291 FIGRPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 291 ~igr~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
++-.|+.+.. .++++.++++.+.+.
T Consensus 101 ~~~~P~y~~~---~~~~i~~~~~~v~~a 125 (288)
T cd00954 101 SAITPFYYKF---SFEEIKDYYREIIAA 125 (288)
T ss_pred EEeCCCCCCC---CHHHHHHHHHHHHHh
Confidence 9999987642 456666666665543
No 311
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.36 E-value=0.11 Score=49.69 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=59.6
Q ss_pred HHHHHHHHHhC-CCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEE
Q 018519 220 AEDARIAVQAG-AAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIF 291 (354)
Q Consensus 220 ~~~a~~~~~~G-~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~ 291 (354)
.+..+.+.+.| +++|.+.|+-|-. ...+. .+.+..+++.+++++||++.=|=.+-.|+++ |-.+|||+|+
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~--~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~ 101 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGEN--FMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLS 101 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCccccc--ccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 45566788999 9999997765422 12222 2244555666667899987755445555553 3448999999
Q ss_pred EcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 292 IGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 292 igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
+..|+.+.. .++++.++++.+.+
T Consensus 102 v~~P~y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 102 AVTPFYYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred EeCCcCCCC---CHHHHHHHHHHHHh
Confidence 999987642 34566666655544
No 312
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.36 E-value=0.064 Score=55.15 Aligned_cols=236 Identities=16% Similarity=0.194 Sum_probs=130.0
Q ss_pred hhcccceeecccc-CCCCCCccceeEc-CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~st~l~-g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|... ...+++|++|.+- ...+..||+.|||...+ +..+|.+.+++|...+++. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 5799999999755 2447888887764 46678999999998776 6789999999998878874 45565443
Q ss_pred h----hC--C-C--ceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecC-----CCCCCchhHHhhhc---------c--
Q 018519 119 S----TG--P-G--IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-----TPRLGRREADIKNR---------F-- 173 (354)
Q Consensus 119 ~----~~--~-~--~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd-----~p~~g~r~~~~r~~---------~-- 173 (354)
+ .. . . ...+.+ .......+.++...+.++..+.+.=+ .++.--..+|++.. +
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV---~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~V~eIMt 170 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVK---SPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMT 170 (505)
T ss_pred HHHHHhhcccccccCCCeee---CCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCcHHHHhc
Confidence 2 11 1 1 011112 12223445566666777777665422 01100011222100 0
Q ss_pred ------CCCCcCccc----cccCCccC--c-Cc-ccch---hhHHHHHhhhcCC-----------ccccc---cc--CCH
Q 018519 174 ------TLPPFLTLK----NFQGLDLG--K-MD-EAND---SGLAAYVAGQIDR-----------SLSWK---GV--LTA 220 (354)
Q Consensus 174 ------~~p~~~~~~----~~~~~~~~--~-~~-~~~~---~~~~~~~~~~~~~-----------~~~w~---Gi--~~~ 220 (354)
.+++..... .+...... + .+ .... .....+.+....| .+.+. |+ ...
T Consensus 171 ~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~ 250 (505)
T PLN02274 171 SDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDK 250 (505)
T ss_pred cCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHH
Confidence 000000000 00000000 0 00 0000 0011111111111 11111 33 346
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
|-+..+.++|+|.|.++..-|+ ....|+.+.+|++..+ ++ .+.-|+|.|.+++..++.+|||+|.+|
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~-~vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-EL-DVIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CC-cEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 8888999999999999764332 2345678888887552 34 444588999999999999999999775
No 313
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.34 E-value=0.11 Score=49.30 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~i 292 (354)
.+.+..+.+.|+++|.+.|+-|-. ...+. .+.+..+++.+++++||++.=|=.+-.|+++ |-.+|||+|++
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~--~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGES--PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLV 99 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCccc--ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 455667789999999997765432 12222 2345556666677899987766556666553 33479999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
..|+.+.. .++++.+++..+.+
T Consensus 100 ~pP~y~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 100 VTPYYNKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred cCCcCCCC---CHHHHHHHHHHHHh
Confidence 99987642 34555555555544
No 314
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.30 E-value=0.18 Score=54.59 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=65.0
Q ss_pred cCCHHHHHHHH----Hh---CCCEEEEecCCcCC-CCCC--cChHHHHHHHHHHhcC-CccEEEcCCCCCHHHHHHHHHc
Q 018519 217 VLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 217 i~~~~~a~~~~----~~---G~d~I~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~i~vi~~GGi~~g~dv~kalal 285 (354)
+.+.+++..+. .. |+|.|.++--..+. .... +..++.+.++++.+.. .+||++-||| +..++.+.++.
T Consensus 108 ~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~ 186 (755)
T PRK09517 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT 186 (755)
T ss_pred CCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc
Confidence 35777766542 22 59999986433332 1122 2357788888877721 3999999999 89999999999
Q ss_pred CcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 286 GASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 286 GAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
||++|.+-+.+.. .+.....++.+.+.+.
T Consensus 187 Ga~giAvisai~~------a~d~~~a~~~l~~~~~ 215 (755)
T PRK09517 187 GIDGLCVVSAIMA------AANPAAAARELRTAFQ 215 (755)
T ss_pred CCCEEEEehHhhC------CCCHHHHHHHHHHHHH
Confidence 9999999998762 2334445555555444
No 315
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.27 E-value=0.078 Score=54.10 Aligned_cols=234 Identities=17% Similarity=0.211 Sum_probs=131.3
Q ss_pred hhcccceeeccccC-CC-CCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|.... .. +++|++|.+ ..++..||+-|||-..+ |..||.+.++.|...++.. ++++|+..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeecccc-cCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 47999999998653 33 488999885 57899999999997666 7899999999999999975 46676544
Q ss_pred hhC------C--CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecC-CCCCC-chhHHhhhc---------cC-----
Q 018519 119 STG------P--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-TPRLG-RREADIKNR---------FT----- 174 (354)
Q Consensus 119 ~~~------~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd-~p~~g-~r~~~~r~~---------~~----- 174 (354)
+.- + ....+.+. .+ ....+.++...+.+...+.+.=+ .++ | --.+|++.. ..
T Consensus 83 e~v~~VKv~eim~~~pvtv~--p~-~tI~eA~~lm~~~~~~~~vVvD~gklv-GIVT~rDL~~~~~~~~V~dIMt~~lit 158 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLA--PH-DTVSDAMALIHKRAHGAAVVILEDRPV-GLVTDSDLLGVDRFTQVRDIMSTDLVT 158 (475)
T ss_pred HHHhhcchhhccccCCeEEC--CC-CCHHHHHHHHHhcCCeEEEEEECCEEE-EEEEHHHhhcCCCCCCHHHHccCCceE
Confidence 321 1 00111221 12 23445566666666655544211 000 1 001222100 00
Q ss_pred CCCcCccccc----cCCccC--c-Cc-ccch---hhHHHHHhhhcCCc-------cccc---cc--CCHHHHHHHHHhCC
Q 018519 175 LPPFLTLKNF----QGLDLG--K-MD-EAND---SGLAAYVAGQIDRS-------LSWK---GV--LTAEDARIAVQAGA 231 (354)
Q Consensus 175 ~p~~~~~~~~----~~~~~~--~-~~-~~~~---~~~~~~~~~~~~~~-------~~w~---Gi--~~~~~a~~~~~~G~ 231 (354)
++........ ...... + .+ .... .....+++....++ +... |+ ...+.++.+.++|+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 0000000000 000000 0 00 0000 00122222111111 1111 32 24578889999999
Q ss_pred CEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 232 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 232 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
|.|+++.+-|++ ....+.+.+|++.. .++|||+ |.+.|.+++..++.+|||+|-+|
T Consensus 239 d~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 239 DVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 999997643442 44456777777654 2689999 66999999999999999999755
No 316
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.26 E-value=0.057 Score=48.94 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=53.1
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcCcCEEEEcHHHHHHHh
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalGAd~V~igr~~l~~~~ 301 (354)
+..+.+.|+++..+.. ...+-+.++++..+.++.+ ++|||+... ++.+++..|||.+.+||++..
T Consensus 132 ~~m~~e~G~~g~~~~~----------~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~--- 197 (215)
T PRK13813 132 AKLAQEAGAFGVVAPA----------TRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYN--- 197 (215)
T ss_pred HHHHHHhCCCeEEECC----------CcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCC---
Confidence 4456678988886521 2234455666655333344 999999864 677888899999999998442
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 018519 302 AEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 302 ~~G~~gv~~~l~~l~~el~ 320 (354)
.+...+.++.++++++
T Consensus 198 ---~~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 198 ---AADPREAAKAINEEIR 213 (215)
T ss_pred ---CCCHHHHHHHHHHHHh
Confidence 1224566777776654
No 317
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=95.26 E-value=0.091 Score=49.81 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
-+.+.|+++.+.++|+|.|.++|- . .+.+.++.+.+ ..++.|-++||| +.+.+.++..+|+|.+.+
T Consensus 194 Ev~tleea~ea~~~GaDiI~lDn~-------~---~e~l~~~v~~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 194 EADTIEQALTVLQASPDILQLDKF-------T---PQQLHHLHERLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFIT 262 (277)
T ss_pred ECCCHHHHHHHHHcCcCEEEECCC-------C---HHHHHHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEe
Confidence 346999999999999999999642 1 23344444444 347889999999 578888888899999999
Q ss_pred cHHH
Q 018519 293 GRPV 296 (354)
Q Consensus 293 gr~~ 296 (354)
|.++
T Consensus 263 gal~ 266 (277)
T TIGR01334 263 SAPY 266 (277)
T ss_pred Ccce
Confidence 9863
No 318
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.25 E-value=0.11 Score=49.47 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=62.2
Q ss_pred CHHHHHHHHH-hCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEE
Q 018519 219 TAEDARIAVQ-AGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGI 290 (354)
Q Consensus 219 ~~~~a~~~~~-~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V 290 (354)
..+.+..+.+ .|+++|.+.|+.|-. ...+. .+.+..+++.+++++|||+.=|-.+-.|+++ |-.+|||+|
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstGE~--~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTGEA--FLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAI 103 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcccc--ccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3456677888 999999997765521 12222 2345556666777899998766666666653 445899999
Q ss_pred EEcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 291 FIGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 291 ~igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
++-.|+.+.. .++++.++++.+.+
T Consensus 104 ~v~~P~y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 104 SAVTPFYYPF---SFEEICDYYREIID 127 (293)
T ss_pred EEeCCcCCCC---CHHHHHHHHHHHHH
Confidence 9999987642 24555555555444
No 319
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.22 E-value=0.13 Score=48.61 Aligned_cols=99 Identities=18% Similarity=0.341 Sum_probs=63.4
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHH
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALA 284 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----ala 284 (354)
+.|++ ..+.++.+.+.|+++|.+.|+-|-. ...+. .+.+..+++.+++++||++-=|=.+..++++ |-.
T Consensus 18 iD~~~--~~~~i~~l~~~Gv~gl~v~GstGE~--~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 18 VDFDA--LERLIEFQIENGTDGLVVCGTTGES--PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred cCHHH--HHHHHHHHHHcCCCEEEECCCCcch--hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHH
Confidence 44444 4466778889999999997664422 12222 2344555666667889876655556666654 344
Q ss_pred cCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 285 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 285 lGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
+|||+|++..|+.+.. .++++.++++.+.+
T Consensus 94 ~G~d~v~~~~P~~~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 94 AGADAALVVTPYYNKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred cCCCEEEEcccccCCC---CHHHHHHHHHHHHh
Confidence 8999999999987642 34556555555554
No 320
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.19 E-value=0.14 Score=47.38 Aligned_cols=105 Identities=23% Similarity=0.295 Sum_probs=59.3
Q ss_pred CceEEEEeecCChH----HHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhccCCC--CcCccccccCCccCcCc
Q 018519 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLP--PFLTLKNFQGLDLGKMD 193 (354)
Q Consensus 123 ~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~ai~i~vd~p~~g~r~~~~r~~~~~p--~~~~~~~~~~~~~~~~~ 193 (354)
+..|+-|-.-.|+. ...+.++++++. |+..+-++.|.|+..+|..++.-.+.+| .-++.. .++
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi------ 161 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGL------ 161 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCC------
Confidence 34566654322222 234445555555 8877767777777766666553323233 111110 111
Q ss_pred ccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 194 EANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
.+...++.+++....|++.=.||.+++|+.++++.|+|++.|
T Consensus 162 -~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 162 -LNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred -CCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 111224444444334555444899999999999999999998
No 321
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=95.15 E-value=0.11 Score=49.47 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=53.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
-+.+.|+++.+.++|+|.|.++|-. .+.+.++.+.++ .++.+-++||| +.+.+.++..+|+|.+.+
T Consensus 195 Ev~tleqa~ea~~agaDiI~LDn~~----------~e~l~~av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 195 EADTPKEAIAALRAQPDVLQLDKFS----------PQQATEIAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFIT 263 (284)
T ss_pred ECCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEE
Confidence 3469999999999999999996632 234444544442 57889999999 477777777799999999
Q ss_pred cHH
Q 018519 293 GRP 295 (354)
Q Consensus 293 gr~ 295 (354)
|.+
T Consensus 264 gal 266 (284)
T PRK06096 264 SAP 266 (284)
T ss_pred Ccc
Confidence 976
No 322
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.11 E-value=2.4 Score=40.55 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccE---EEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV---FLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v---i~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.+-++...++|||+|.+ +| +.+.+.+.++.+.+. .|+ +..||-.-...+-..-++|.+.|..+...
T Consensus 168 I~Ra~aY~eAGAD~ifi--~~-------~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~ 236 (294)
T TIGR02319 168 IRRSREYVAAGADCIFL--EA-------MLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSG 236 (294)
T ss_pred HHHHHHHHHhCCCEEEe--cC-------CCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHH
Confidence 34455778999999998 43 445677888888773 454 44444322234555556999999999877
Q ss_pred HHHH
Q 018519 297 VYSL 300 (354)
Q Consensus 297 l~~~ 300 (354)
+++.
T Consensus 237 ~~aa 240 (294)
T TIGR02319 237 WMAA 240 (294)
T ss_pred HHHH
Confidence 6653
No 323
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.17 Score=46.77 Aligned_cols=74 Identities=30% Similarity=0.376 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHhCCCEEEEe-cCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 218 LTAEDARIAVQAGAAGIIVS-NHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs-~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
...+.|+...+.|+..+-+- =.|. ..+++-..+.+.+|.+.+ ++||=.-||||+-+++.+.|.+|++.|.+|+.
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA--~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~ 106 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGA--KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTA 106 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeecccc--ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence 45678888899999988652 1232 124456678899999988 89999999999999999999999999999993
No 324
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.98 E-value=0.15 Score=45.47 Aligned_cols=63 Identities=32% Similarity=0.374 Sum_probs=46.8
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.|.+.+.+..+.++|+|+|.. ++. ..+ +.+.++.. .++++. |+.|.+++.+|+.+|||.+.+-
T Consensus 62 ~v~~~~~~~~a~~~Ga~~i~~---p~~-------~~~-~~~~~~~~--~~~~i~--gv~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 62 TVLTPEQADAAIAAGAQFIVS---PGL-------DPE-VVKAANRA--GIPLLP--GVATPTEIMQALELGADIVKLF 124 (190)
T ss_pred eCCCHHHHHHHHHcCCCEEEc---CCC-------CHH-HHHHHHHc--CCcEEC--CcCCHHHHHHHHHCCCCEEEEc
Confidence 467899999999999999953 211 122 33333333 567765 8889999999999999999983
No 325
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.97 E-value=0.1 Score=53.69 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=124.5
Q ss_pred hhcccceeeccccC---CCCCCccceeEc--------CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCC
Q 018519 41 NAFSRILFRPRILI---DVSKIDMNTTVL--------GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW 109 (354)
Q Consensus 41 ~~~~~i~l~pr~l~---~~~~vd~st~l~--------g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~ 109 (354)
..||++.|+|.... ..+++|++|.+- +.++..|+.-|+|...+ +-+||.+..+.|...++..
T Consensus 10 ~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~Satmdtvt------gdalAiala~~gG~g~Ih~- 82 (502)
T PRK07107 10 RTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVS------DDNMAIALAREGGLSFIFG- 82 (502)
T ss_pred ccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHh------hHHHHHHHHHcCCCeEeeC-
Confidence 47999999998763 447889998874 46688899999996654 5689999999998877753
Q ss_pred CCCCHHHHHhh----CC-------CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCC-----CCCCchhHHhhhc-
Q 018519 110 STSSVEEVAST----GP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNR- 172 (354)
Q Consensus 110 ~~~~~eei~~~----~~-------~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~-----p~~g~r~~~~r~~- 172 (354)
++++|+-++. .. .+. .+. ....+.+.++...+.+...+.+.=+. .+.--..+|++..
T Consensus 83 -n~sie~qa~lV~kVk~~~~g~i~~~~--tV~---pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~ 156 (502)
T PRK07107 83 -SQSIESEAAMVRRVKNYKAGFVVSDS--NLT---PDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR 156 (502)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCcCCCC--EeC---CCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc
Confidence 3455543221 11 111 121 22334455666666666555443210 0000011222200
Q ss_pred --cCCC--CcCcc-cccc------------------CCcc-CcCcc-cch---hhHHHHHhhhcCCc--------c-ccc
Q 018519 173 --FTLP--PFLTL-KNFQ------------------GLDL-GKMDE-AND---SGLAAYVAGQIDRS--------L-SWK 215 (354)
Q Consensus 173 --~~~p--~~~~~-~~~~------------------~~~~-~~~~~-~~~---~~~~~~~~~~~~~~--------~-~w~ 215 (354)
...+ .-++. +.+. ++.. ...+. ... .....+.+....|. + .-.
T Consensus 157 ~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~ 236 (502)
T PRK07107 157 MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGA 236 (502)
T ss_pred cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeee
Confidence 0000 00000 0000 0000 00000 000 00111111111110 0 001
Q ss_pred ccC---CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVL---TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~---~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
++. ..+.++.+.++|+|.|+|.+.-|+ ..-..+.+.++++..++++ .|..|-|-+++++..++.+|||++-+
T Consensus 237 av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~-~V~aGnV~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 237 GINTRDYAERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSV-KVGAGNVVDREGFRYLAEAGADFVKV 311 (502)
T ss_pred ccChhhHHHHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCc-eEEeccccCHHHHHHHHHcCCCEEEE
Confidence 221 246678889999999999643222 1223567888887664233 56678899999999999999999988
Q ss_pred c
Q 018519 293 G 293 (354)
Q Consensus 293 g 293 (354)
|
T Consensus 312 g 312 (502)
T PRK07107 312 G 312 (502)
T ss_pred C
Confidence 4
No 326
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=94.97 E-value=0.06 Score=50.34 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=49.2
Q ss_pred HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh-----cCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 224 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 224 ~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
+.+.++|||+|.-|..- ..+.++.+.+.-+++.+ ++++-|=++|||||.+++.+.+.+|.+.. |.-|+
T Consensus 154 ~~a~~aGADFVKTSTGf----~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 154 EIAIKAGADFIKTSTGK----VPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred HHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 47789999999875431 12345555555555554 35789999999999999999999997653 55554
No 327
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.94 E-value=0.17 Score=45.79 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=44.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.|++.++++.+.++|+++|+ |-+- ..+.+.. .+.. ++|+ -=|+.|+.++..|+.+||+.|=+
T Consensus 62 TVl~~e~a~~ai~aGA~Fiv-SP~~---------~~~vi~~-a~~~--~i~~--iPG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 62 TILNAKQFEDAAKAGSRFIV-SPGT---------TQELLAA-ANDS--DVPL--LPGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred eCcCHHHHHHHHHcCCCEEE-CCCC---------CHHHHHH-HHHc--CCCE--eCCCCCHHHHHHHHHCCCCEEEE
Confidence 58999999999999999996 2211 1223332 2222 4444 46899999999999999998844
No 328
>PRK14057 epimerase; Provisional
Probab=94.91 E-value=1.2 Score=41.74 Aligned_cols=91 Identities=8% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
+..+..+..++. +|.|.|=. ..|. ....-+..++-+.++++.... ++.|-+||||.. +-+.+..++|||.+.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEE
Confidence 456666666654 88887632 2221 111234455556555554422 577999999964 4666888899999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLR 316 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~ 316 (354)
|+. +|. .+...+.++.++
T Consensus 221 GSa-lF~-----~~d~~~~i~~l~ 238 (254)
T PRK14057 221 GSA-LFR-----DDRLVENTRSWR 238 (254)
T ss_pred ChH-hhC-----CCCHHHHHHHHH
Confidence 986 452 223444555554
No 329
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.85 E-value=0.088 Score=50.02 Aligned_cols=93 Identities=20% Similarity=0.334 Sum_probs=59.0
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIF 291 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~ 291 (354)
..+.+..+.+.|+++|.+.|+.|-. ...+. .+.+..+++.+++++|||+.=|=.+-.++++ |-.+|||+++
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~--~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~ 101 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEF--YSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVL 101 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTG--GGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEE
Confidence 3456677889999999997765421 12222 2344555666677899888655556666653 3348999999
Q ss_pred EcHHHHHHHhhcCHHHHHHHHHHHH
Q 018519 292 IGRPVVYSLAAEGEKGVRRVLEMLR 316 (354)
Q Consensus 292 igr~~l~~~~~~G~~gv~~~l~~l~ 316 (354)
+..|+.+. ..++++.++++.+.
T Consensus 102 v~~P~~~~---~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 102 VIPPYYFK---PSQEELIDYFRAIA 123 (289)
T ss_dssp EEESTSSS---CCHHHHHHHHHHHH
T ss_pred Eecccccc---chhhHHHHHHHHHH
Confidence 99997763 23455655555444
No 330
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.85 E-value=0.12 Score=47.19 Aligned_cols=78 Identities=26% Similarity=0.261 Sum_probs=52.3
Q ss_pred HHHHHhhhcC-Cc--ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCH
Q 018519 200 LAAYVAGQID-RS--LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 276 (354)
Q Consensus 200 ~~~~~~~~~~-~~--~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g 276 (354)
++++.+.... |. ++-..|++.++++.+.++|+++|+ |-+- ..+.+. ..... ++|++ =|+.|+
T Consensus 55 i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~~---------~~~v~~-~~~~~--~i~~i--PG~~T~ 119 (213)
T PRK06552 55 IKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPSF---------NRETAK-ICNLY--QIPYL--PGCMTV 119 (213)
T ss_pred HHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCCC---------CHHHHH-HHHHc--CCCEE--CCcCCH
Confidence 4555444322 22 333358999999999999999996 2211 112222 22222 56655 489999
Q ss_pred HHHHHHHHcCcCEEEE
Q 018519 277 TDVFKALALGASGIFI 292 (354)
Q Consensus 277 ~dv~kalalGAd~V~i 292 (354)
.++.+|+.+|||.|.+
T Consensus 120 ~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 120 TEIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999998
No 331
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.69 E-value=0.14 Score=52.38 Aligned_cols=238 Identities=17% Similarity=0.223 Sum_probs=129.0
Q ss_pred hhcccceeeccccC-CCCCCccceeEc-CeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRILI-DVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l~-~~~~vd~st~l~-g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|.... ..+++|++|.+- +..+..||+.|||...+ +..++.+.++.|...+++. +++.++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 47999999998653 446889988874 56788999999998776 6789999999998888874 34565432
Q ss_pred h----hC--CCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC-CCC-chhHHhhhc----------c------C
Q 018519 119 S----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP-RLG-RREADIKNR----------F------T 174 (354)
Q Consensus 119 ~----~~--~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p-~~g-~r~~~~r~~----------~------~ 174 (354)
+ .. .....-++..-.......+.++...+.++..+.+.=+.- ..| -..+|++.. . .
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVT 160 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEE
Confidence 2 11 111000111111222345566666666766655431100 000 001121100 0 0
Q ss_pred CCCcCccccc----c--CCccCc-Ccc-cc---hhhHHHHHhhhcCCc--------cccccc-----CCHHHHHHHHHhC
Q 018519 175 LPPFLTLKNF----Q--GLDLGK-MDE-AN---DSGLAAYVAGQIDRS--------LSWKGV-----LTAEDARIAVQAG 230 (354)
Q Consensus 175 ~p~~~~~~~~----~--~~~~~~-~~~-~~---~~~~~~~~~~~~~~~--------~~w~Gi-----~~~~~a~~~~~~G 230 (354)
.+........ . +...-. .++ .. ......+++....|. +...+. .+.+.++.+.++|
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 0000000000 0 000000 000 00 001122222111111 111222 2468889999999
Q ss_pred CCEEEEec-CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 231 AAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 231 ~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+|.|++.. ||. . ...++.+.++++.. .++||++ |++.|.+++..++.+|||+|-+|
T Consensus 241 vdvivvD~a~g~-~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 241 VDVLVVDTAHGH-S----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCEEEEECCCCc-c----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99998865 442 1 23456677777654 2688888 99999999999999999999775
No 332
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.64 E-value=0.46 Score=41.63 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcC-CccEEEcCCCCC--------HHHHHHHHHcCcCEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGI 290 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~i~vi~~GGi~~--------g~dv~kalalGAd~V 290 (354)
.+.++.+.+.|+++|.+.+ +.+..+++..++ ++||++-=|-.+ -+.+.+|..+|||++
T Consensus 16 ~~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred HHHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 3556678889999999843 556667777766 788876443333 244556777999999
Q ss_pred EEcHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 291 FIGRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 291 ~igr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
++.-|+.+.... .++++.++++.+.+
T Consensus 83 ~v~~~~~~~~~~-~~~~~~~~~~~i~~ 108 (201)
T cd00945 83 DVVINIGSLKEG-DWEEVLEEIAAVVE 108 (201)
T ss_pred EEeccHHHHhCC-CHHHHHHHHHHHHH
Confidence 999887654311 13444444444444
No 333
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.62 E-value=0.12 Score=50.68 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
..+.+..+.++|+|.|+|+..-|+ .....+.+.++++..+ ++||| .|.|-|++-+...+..|||+|-+|
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 467888899999999999753222 2333566778877764 68887 588999999988888999999988
No 334
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.60 E-value=0.21 Score=47.46 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=62.8
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHH
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALA 284 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----ala 284 (354)
+.|++ ..+.++.+.+.|+++|.+.|+-|-. ...+. .+.+..+++.+++++||++.=|=.+-.|+++ |-.
T Consensus 19 iD~~~--l~~~i~~l~~~Gv~gi~~~Gs~GE~--~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 19 VDFAA--LRKLVDYLIANGTDGLVVVGTTGES--PTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred cCHHH--HHHHHHHHHHcCCCEEEECCcCCcc--ccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHH
Confidence 44444 4456778889999999996664422 22222 2345556666777899876544445555553 334
Q ss_pred cCcCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHH
Q 018519 285 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 318 (354)
Q Consensus 285 lGAd~V~igr~~l~~~~~~G~~gv~~~l~~l~~e 318 (354)
+|||+|++..|+++.. .++++.++++.+.+.
T Consensus 95 ~G~d~v~~~pP~~~~~---~~~~i~~~~~~ia~~ 125 (292)
T PRK03170 95 AGADGALVVTPYYNKP---TQEGLYQHFKAIAEA 125 (292)
T ss_pred cCCCEEEECCCcCCCC---CHHHHHHHHHHHHhc
Confidence 8999999999987642 456666666555543
No 335
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.54 E-value=4.5 Score=38.56 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=47.5
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
..+-++...++|||+|.+ ++ ...+.+.+.++.+.++. ++|+++..+-.-...+...-.+|.+.|..|..
T Consensus 171 Ai~Ra~ay~eAGAD~ifv--~~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~ 242 (285)
T TIGR02320 171 ALKRAEAYAEAGADGIMI--HS------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANH 242 (285)
T ss_pred HHHHHHHHHHcCCCEEEe--cC------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHH
Confidence 344566889999999999 32 23455667777776643 56887654311112344445699999999987
Q ss_pred HHHH
Q 018519 296 VVYS 299 (354)
Q Consensus 296 ~l~~ 299 (354)
.+++
T Consensus 243 ~~~a 246 (285)
T TIGR02320 243 LLRA 246 (285)
T ss_pred HHHH
Confidence 6654
No 336
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=94.40 E-value=0.078 Score=48.86 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH-----------HHHHHHHcCcC
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGAS 288 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-----------dv~kalalGAd 288 (354)
...++.+.+.|+|+++.+.+ .+..+++..+ .-.+++.+||+ +. ..-.++..|||
T Consensus 138 ~~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad 202 (230)
T PRK00230 138 LRLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSD 202 (230)
T ss_pred HHHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCC
Confidence 34566778899999987422 1345555543 33457889998 33 46678889999
Q ss_pred EEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 018519 289 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 320 (354)
Q Consensus 289 ~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~ 320 (354)
.+.+||++..+ +.....++.+.+++.
T Consensus 203 ~iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 203 YIVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEEECCcccCC------CCHHHHHHHHHHHhh
Confidence 99999987642 223346666666654
No 337
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.35 E-value=0.12 Score=48.04 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=29.6
Q ss_pred hHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 199 GLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 199 ~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
.++-+++....|.+.--||.+++|+.++++.|+|++-+
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 35556665555555555999999999999999999977
No 338
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.33 E-value=0.56 Score=43.91 Aligned_cols=65 Identities=31% Similarity=0.476 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCC-HHH-H----HHHHHcCcCEEEEcHH
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTD-V----FKALALGASGIFIGRP 295 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~-g~d-v----~kalalGAd~V~igr~ 295 (354)
-++.+.+.|||.|.+.=.| ..+...++.+.+ .+||+.+||=+. ..+ + ..++..||.++.+||=
T Consensus 171 aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRN 239 (265)
T COG1830 171 AARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRN 239 (265)
T ss_pred HHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhh
Confidence 3457899999999872211 126677888877 599999999998 332 2 2455689999999995
Q ss_pred HH
Q 018519 296 VV 297 (354)
Q Consensus 296 ~l 297 (354)
+.
T Consensus 240 if 241 (265)
T COG1830 240 IF 241 (265)
T ss_pred hh
Confidence 43
No 339
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=94.31 E-value=2.5 Score=38.67 Aligned_cols=94 Identities=17% Similarity=0.275 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcC--CccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 219 TAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
++-++..-.-.-+|.|.+=. ..|. ....-+..++-+.++++.... ++-|-+||||. .+-+-++.++|||.+..|+
T Consensus 120 Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 120 TPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGS 198 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEE
Confidence 33333333334578887622 2111 112235566677777776642 57799999995 3445455569999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHH
Q 018519 295 PVVYSLAAEGEKGVRRVLEMLREEF 319 (354)
Q Consensus 295 ~~l~~~~~~G~~gv~~~l~~l~~el 319 (354)
.+|. + +.....++.++.++
T Consensus 199 -alF~----~-~d~~~~i~~~~~~~ 217 (220)
T COG0036 199 -ALFG----A-DDYKATIRELRGEL 217 (220)
T ss_pred -EEeC----C-ccHHHHHHHHHHHh
Confidence 5652 2 22445566665554
No 340
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.22 E-value=0.024 Score=50.00 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=40.5
Q ss_pred HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 224 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 224 ~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
+.+.+..+|+|-+ +.+ . ....+.++.+.+ ++|||+.|=|++.+|+.++|+.||++|.-..+-||
T Consensus 111 ~~i~~~~PD~vEi-------lPg-~-~p~vi~~i~~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 111 KQIEQSKPDAVEI-------LPG-V-MPKVIKKIREET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHT-SEEEE-------ESC-C-HHHHHCCCCCCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHhhcCCCEEEE-------chH-H-HHHHHHHHHHhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 3445677787776 111 1 112333333333 79999999999999999999999999999988776
No 341
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.19 E-value=0.22 Score=48.22 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHhC--CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 221 EDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 221 ~~a~~~~~~G--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+..+.++| +|.|+++-.-|+ ....++.+.++++.. +.|.+..|.|-+++++.+.+..|||+|-+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4556778889 799999763222 234466788888766 678899999999999999999999999877
No 342
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=93.97 E-value=0.71 Score=43.49 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.2
Q ss_pred cCCccccc-ccCCHHHHHHHHHhCCCEEEEe
Q 018519 208 IDRSLSWK-GVLTAEDARIAVQAGAAGIIVS 237 (354)
Q Consensus 208 ~~~~~~w~-Gi~~~~~a~~~~~~G~d~I~vs 237 (354)
.+.++... ||.++|+++.+.++|||+++|.
T Consensus 201 t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 201 TNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred cCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 34444444 8999999999999999999993
No 343
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.90 E-value=0.24 Score=45.43 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=44.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.|++.++++.+.++|+++|+- - +. +.+.+....+ . ++|++ =|+.|+.++..|+.+||+.|=+
T Consensus 77 TVl~~e~a~~a~~aGA~FiVs-P--~~-------~~~v~~~~~~-~--~i~~i--PG~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 77 SIVDAATAALYIQLGANFIVT-P--LF-------NPDIAKVCNR-R--KVPYS--PGCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred eCcCHHHHHHHHHcCCCEEEC-C--CC-------CHHHHHHHHH-c--CCCEe--CCCCCHHHHHHHHHCCCCEEEE
Confidence 489999999999999999962 1 11 1222322222 2 44444 6899999999999999998744
No 344
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.87 E-value=2.1 Score=41.80 Aligned_cols=124 Identities=21% Similarity=0.292 Sum_probs=71.9
Q ss_pred HHHhhhcCCcccccccC-CHHHHHH----HHHhCCCEEEEecCCcCCCCC-Cc--ChHHHHHHHHHHhcCCccEEEcCCC
Q 018519 202 AYVAGQIDRSLSWKGVL-TAEDARI----AVQAGAAGIIVSNHGARQLDY-VP--ATIMALEEVVKATQGRIPVFLDGGV 273 (354)
Q Consensus 202 ~~~~~~~~~~~~w~Gi~-~~~~a~~----~~~~G~d~I~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~i~vi~~GGi 273 (354)
+.+.+...|.+...|.. +.++... ....|-+-|++--.|.+.... .. ..+..++.+++.. ..|||+|..=
T Consensus 194 ~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi~d~sH 271 (335)
T PRK08673 194 KEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVIVDPSH 271 (335)
T ss_pred HHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEEEeCCC
Confidence 33444556666666754 6666543 456777766664445544422 22 2345666666654 6899997665
Q ss_pred CCH------HHHHHHHHcCcCEEEEcHHHHHHHh-hcCHHHH-HHHHHHHHHHHHHHHHHhC
Q 018519 274 RRG------TDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSG 327 (354)
Q Consensus 274 ~~g------~dv~kalalGAd~V~igr~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G 327 (354)
.+| .-...|+++|||+++|-..+--.-+ +.|...+ -+-++.|.++++..-...|
T Consensus 272 ~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 272 ATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred CCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 555 3456788899999999984422111 2333222 1345666666666665555
No 345
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=93.86 E-value=2 Score=40.37 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=89.2
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEecCCC---------CC--------CH-------HHHHhhCC-CceE
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS--------SV-------EEVASTGP-GIRF 126 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~---------~~--------~~-------eei~~~~~-~~~~ 126 (354)
.||+-+..| .+ -.|+.+.+.|+.+++.-.+ +. +. +|+....+ .|.+
T Consensus 15 ~pIig~gaG-tG--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAG-TG--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEES-SH--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeec-cc--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 477666543 33 5899999999988773211 10 00 23332333 5677
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhh
Q 018519 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (354)
Q Consensus 127 ~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (354)
+=+......-.+...+++.++.||..+. |+ |.-|--.-..|+.+. ..+++ -..++.-+...
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LE-e~Gmg---------------y~~EVemi~~A 146 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLE-ETGMG---------------YDREVEMIRKA 146 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHH-HTT-----------------HHHHHHHHHHH
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHH-hcCCC---------------HHHHHHHHHHH
Confidence 7776533334567788999999999865 43 543311111111100 00000 00111111111
Q ss_pred hcCCcccccccCCHHHHHHHHHhCCCEEEEec---CCcCC-CCCCcChHH---HHHHHHHHh---cCCc-cEEEcCCCCC
Q 018519 207 QIDRSLSWKGVLTAEDARIAVQAGAAGIIVSN---HGARQ-LDYVPATIM---ALEEVVKAT---QGRI-PVFLDGGVRR 275 (354)
Q Consensus 207 ~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~---~gg~~-~~~~~~~~~---~l~~i~~~~---~~~i-~vi~~GGi~~ 275 (354)
...--++.-=+.++|+|++..++|+|.|+++- .||.- .....+--+ .+.+|.++. +.++ .++--|-|.+
T Consensus 147 ~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 147 HEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp HHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred HHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 10011111114699999999999999999932 12221 112222222 233444433 3444 4445556999
Q ss_pred HHHHHHHHH--cCcCEEEEcHH
Q 018519 276 GTDVFKALA--LGASGIFIGRP 295 (354)
Q Consensus 276 g~dv~kala--lGAd~V~igr~ 295 (354)
++|+...+. -|+++..=|+.
T Consensus 227 p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 227 PEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHHHHHH-TTEEEEEESTT
T ss_pred HHHHHHHHhcCCCCCEEecccc
Confidence 999999998 36888877764
No 346
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.82 E-value=0.43 Score=43.74 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccc
Q 018519 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (354)
Q Consensus 135 ~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 214 (354)
+-.+.+..+...+.||..+--+-|.|+..+|..+.--.-.||-+. +-..+.. ..+...+.-+++....|.++=
T Consensus 116 ~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~a--PIGSg~G-----~~n~~~l~iiie~a~VPviVD 188 (262)
T COG2022 116 PIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGA--PIGSGLG-----LQNPYNLEIIIEEADVPVIVD 188 (262)
T ss_pred hHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccc--cccCCcC-----cCCHHHHHHHHHhCCCCEEEe
Confidence 333444444444556665555555555555544432111233210 0001100 012233555666655555554
Q ss_pred cccCCHHHHHHHHHhCCCEEEE
Q 018519 215 KGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
-||-++.+|.++++.|+|+|-+
T Consensus 189 AGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 189 AGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CCCCChhHHHHHHhcccceeeh
Confidence 4899999999999999999977
No 347
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=93.81 E-value=1.9 Score=38.47 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEe-cCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCc
Q 018519 133 KDRNVVAQLVRRAERAGFKAIALT-VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (354)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~i~-vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (354)
.|...+.+.++.+.+.|++.|.+. +|.+.. | ++. . ....++++.+. ...+
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-------------~------~~~-~--------~~~~v~~i~~~-~~~~ 58 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFV-------------P------NLT-F--------GPPVLEALRKY-TDLP 58 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-------------C------Ccc-c--------CHHHHHHHHhc-CCCc
Confidence 577888999999999999999886 455542 1 000 0 01123333322 1222
Q ss_pred cc--ccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCE
Q 018519 212 LS--WKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASG 289 (354)
Q Consensus 212 ~~--w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~ 289 (354)
+. ...-...+.+..+.++|+|+|++ |++.. ......+..+++ . .+.++..-...+..+.++++..++|.
T Consensus 59 v~v~lm~~~~~~~~~~~~~~gadgv~v--h~~~~----~~~~~~~~~~~~-~--g~~~~~~~~~~t~~e~~~~~~~~~d~ 129 (210)
T TIGR01163 59 IDVHLMVENPDRYIEDFAEAGADIITV--HPEAS----EHIHRLLQLIKD-L--GAKAGIVLNPATPLEFLEYVLPDVDL 129 (210)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEE--ccCCc----hhHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHHHhhCCE
Confidence 21 11112346677888999999999 76421 112233333332 2 33444444466788888999889999
Q ss_pred EEEcH
Q 018519 290 IFIGR 294 (354)
Q Consensus 290 V~igr 294 (354)
+.+++
T Consensus 130 i~~~~ 134 (210)
T TIGR01163 130 VLLMS 134 (210)
T ss_pred EEEEE
Confidence 98865
No 348
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.77 E-value=0.28 Score=50.21 Aligned_cols=234 Identities=18% Similarity=0.245 Sum_probs=129.6
Q ss_pred hhcccceeeccccC-CC-CCCccceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHH
Q 018519 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (354)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (354)
..||++.|+|.... .. +++|++|++ +..+..||+.|||...+ +..+|.+.++.|...++.. +.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHH
Confidence 47999999998663 34 488999985 88899999999998776 7799999999998888864 34554433
Q ss_pred hhC---C--Cc---eEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCC--CCCC-chhHHhhhc---------c-----
Q 018519 119 STG---P--GI---RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLG-RREADIKNR---------F----- 173 (354)
Q Consensus 119 ~~~---~--~~---~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~--p~~g-~r~~~~r~~---------~----- 173 (354)
+.- . .. ..+-+ . ......+.+++..+.+...+.+.-+. ++ | -..+|++.. .
T Consensus 84 ~~l~~VKv~~iMi~~pvtv--~-~d~tv~eA~~~m~~~~~s~l~VVD~~gklv-GIVT~rDL~~~~~~~~V~diMt~~~i 159 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTL--S-PDDTVGDALALLPKRAHGAVVVVDEEGRPV-GVVTEADCAGVDRFTQVRDVMSTDLV 159 (479)
T ss_pred HHHhhcccccccccCCeEE--C-CCCCHHHHHHHHHhcCCceEEEECCCCeEE-EEEeHHHHhcCccCCCHHHhccCCce
Confidence 221 1 10 01111 1 12234556666666676666553111 10 1 011222110 0
Q ss_pred CCCCcCccc----cccC--CccCc-Ccc-cch---hhHHHHHhhhcCCc-------cccc---cc--CCHHHHHHHHHhC
Q 018519 174 TLPPFLTLK----NFQG--LDLGK-MDE-AND---SGLAAYVAGQIDRS-------LSWK---GV--LTAEDARIAVQAG 230 (354)
Q Consensus 174 ~~p~~~~~~----~~~~--~~~~~-~~~-~~~---~~~~~~~~~~~~~~-------~~w~---Gi--~~~~~a~~~~~~G 230 (354)
.++...... .+.. ...-+ .+. ... .....+.+....++ +... |+ ...+.+..+.++|
T Consensus 160 tV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aG 239 (479)
T PRK07807 160 TLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAG 239 (479)
T ss_pred EECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhC
Confidence 000000000 0000 00000 000 000 00111111111111 0111 32 2457788899999
Q ss_pred CCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 231 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 231 ~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+|.|+|+.+-|+ +...++.+.+|++..+ +++|| .|.|.|.+.+..++.+|||+|-+|
T Consensus 240 vd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~-agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 240 VDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIV-AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEE-eeccCCHHHHHHHHHcCCCEEEEC
Confidence 999999764443 4556778888888653 45554 588999999999999999998744
No 349
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.74 E-value=0.3 Score=44.29 Aligned_cols=78 Identities=26% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHhhhcCC-cccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 200 LAAYVAGQIDR-SLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 200 ~~~~~~~~~~~-~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
+..+.+....+ .++-..|++.+++..+.++|+|+|+. ++ .+.+ +.+.+... .++++.. +.|.++
T Consensus 52 i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivs---p~-------~~~~-v~~~~~~~--~~~~~~G--~~t~~E 116 (206)
T PRK09140 52 IAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVT---PN-------TDPE-VIRRAVAL--GMVVMPG--VATPTE 116 (206)
T ss_pred HHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEEC---CC-------CCHH-HHHHHHHC--CCcEEcc--cCCHHH
Confidence 55555443322 23333589999999999999999964 11 1122 22222222 4544443 999999
Q ss_pred HHHHHHcCcCEEEE
Q 018519 279 VFKALALGASGIFI 292 (354)
Q Consensus 279 v~kalalGAd~V~i 292 (354)
+.+|..+|||.|.+
T Consensus 117 ~~~A~~~Gad~vk~ 130 (206)
T PRK09140 117 AFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999987
No 350
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.63 E-value=0.28 Score=47.63 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCC--CEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 220 AEDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 220 ~~~a~~~~~~G~--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.+..+.++|+ |.|.|+..-| +.....+.+.++++..+ ++|| ..|.|.|.+++..++.+|||++.+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 466778899965 9999965322 23444566777777552 3544 4466889999999999999999877
No 351
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.63 E-value=6.9 Score=37.33 Aligned_cols=188 Identities=22% Similarity=0.207 Sum_probs=99.3
Q ss_pred eEecccccccccCChhhHHHHHHHHHcCCcEEe-cCCC-----------CCCHHHHHh-------hCCCceEEEEe-ecC
Q 018519 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-SSWS-----------TSSVEEVAS-------TGPGIRFFQLY-VYK 133 (354)
Q Consensus 74 i~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~-s~~~-----------~~~~eei~~-------~~~~~~~~QLy-~~~ 133 (354)
.++.|-.+ |..-|+.+.++|...+. |+.+ ..+++|+.+ ...-|..+=+= ...
T Consensus 14 ~l~~p~~~--------Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG 85 (285)
T TIGR02317 14 ILQIPGAI--------NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFG 85 (285)
T ss_pred cEEeCCCC--------CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 45666544 44688888888876554 2221 124444432 22233333221 123
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccc
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (354)
++....+.+++.+++|+.+|.|. |.-. .+| .++. + + +.+.. .+.....++..+.....+.+.
T Consensus 86 ~~~~v~~tv~~~~~aG~agi~IE-Dq~~-pK~-----cgh~-~-g---~~lv~------~ee~~~kI~Aa~~a~~~~d~~ 147 (285)
T TIGR02317 86 EAFNVARTVREMEDAGAAAVHIE-DQVL-PKR-----CGHL-P-G---KELVS------REEMVDKIAAAVDAKRDEDFV 147 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe-cCCC-ccc-----cCCC-C-C---ccccC------HHHHHHHHHHHHHhccCCCEE
Confidence 57777888999999998887664 3211 111 1110 0 0 00000 001122244443332233221
Q ss_pred cc---------cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEE---EcCCCCCH-HHH
Q 018519 214 WK---------GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDV 279 (354)
Q Consensus 214 w~---------Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGi~~g-~dv 279 (354)
.- |+ -..+-++...++|||.|.+ +| +.+.+.+.++.+.+ +.|++ ..+|- ++ ..+
T Consensus 148 IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~-~p~~s~ 215 (285)
T TIGR02317 148 IIARTDARAVEGLDAAIERAKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVPLLANMTEFGK-TPLFTA 215 (285)
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCH
Confidence 11 21 1334456778999999999 43 44567777888877 46773 33442 23 245
Q ss_pred HHHHHcCcCEEEEcHHHHHH
Q 018519 280 FKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 280 ~kalalGAd~V~igr~~l~~ 299 (354)
.+.-++|.+.|..|...+++
T Consensus 216 ~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 216 DELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHHcCCcEEEEchHHHHH
Confidence 55566999999999876664
No 352
>PRK08005 epimerase; Validated
Probab=93.57 E-value=4.4 Score=36.88 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHhCCCEEEEec-CCcC-CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 295 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~ 295 (354)
+..+..+..++ =+|.|.|=. ..|. ....-+..++-+.++++... ...|-+||||. .+-+.+..+.|||.+.+|+.
T Consensus 117 Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 117 TPLLPYRYLAL-QLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred CCHHHHHHHHH-hcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChH
Confidence 34555554443 478877632 2221 11233455566666665543 35799999997 55666778899999999986
Q ss_pred HHH
Q 018519 296 VVY 298 (354)
Q Consensus 296 ~l~ 298 (354)
+|
T Consensus 194 -iF 195 (210)
T PRK08005 194 -LF 195 (210)
T ss_pred -hh
Confidence 44
No 353
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=93.53 E-value=0.39 Score=45.22 Aligned_cols=70 Identities=29% Similarity=0.318 Sum_probs=54.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHH--hcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
-+-+.+++.+|.++|+|.|-++|-. .+.+.++.+. .++++-+=+|||| +.+.+-.+..+|.|.+.+|
T Consensus 194 Evesle~~~eAl~agaDiImLDNm~----------~e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 194 EVESLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVG 262 (280)
T ss_pred EcCCHHHHHHHHHcCCCEEEecCCC----------HHHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeC
Confidence 4579999999999999999998743 2445555555 4457888899999 4666767777999999999
Q ss_pred HHH
Q 018519 294 RPV 296 (354)
Q Consensus 294 r~~ 296 (354)
.+.
T Consensus 263 alt 265 (280)
T COG0157 263 ALT 265 (280)
T ss_pred ccc
Confidence 754
No 354
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.49 E-value=3.7 Score=38.77 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=54.2
Q ss_pred HhhhcCCcccccccC-CHHHHHHH----HHhCCCEEEEecCCcCCCCCCcC----hHHHHHHHHHHhcCCccEEEcCCCC
Q 018519 204 VAGQIDRSLSWKGVL-TAEDARIA----VQAGAAGIIVSNHGARQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVR 274 (354)
Q Consensus 204 ~~~~~~~~~~w~Gi~-~~~~a~~~----~~~G~d~I~vs~~gg~~~~~~~~----~~~~l~~i~~~~~~~i~vi~~GGi~ 274 (354)
+.+...|++...|.. +.++...+ ...|-.-+.+-=.|++... +.+ .+..++.+++.. ..||+.|.+=.
T Consensus 130 ~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~-~Y~~~~vdl~~i~~lk~~~--~~pV~~D~sHs 206 (266)
T PRK13398 130 VGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFE-TYTRNTLDLAAVAVIKELS--HLPIIVDPSHA 206 (266)
T ss_pred HhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCC-CCCHHHHHHHHHHHHHhcc--CCCEEEeCCCc
Confidence 344555666556754 66666544 4567765555333543332 222 334455555443 68999965443
Q ss_pred C------HHHHHHHHHcCcCEEEEcHHH
Q 018519 275 R------GTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 275 ~------g~dv~kalalGAd~V~igr~~ 296 (354)
. ...+..|+++|||+++|-+-+
T Consensus 207 ~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 207 TGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 3 456778889999999999854
No 355
>PLN02591 tryptophan synthase
Probab=93.27 E-value=0.63 Score=43.48 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=68.4
Q ss_pred eccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHh---hCC--CceEEEEeecCChHHHHHHHHH
Q 018519 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS---TGP--GIRFFQLYVYKDRNVVAQLVRR 144 (354)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~---~~~--~~~~~QLy~~~d~~~~~~~~~~ 144 (354)
.+.|++ =|++.+....-|...+.+.|+++|+..++= --.++||..+ .+. +.-.+++..+...+ +.+++
T Consensus 77 ~~~p~i--lm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii--pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~---~ri~~ 149 (250)
T PLN02591 77 LSCPIV--LFTYYNPILKRGIDKFMATIKEAGVHGLVV--PDLPLEETEALRAEAAKNGIELVLLTTPTTPT---ERMKA 149 (250)
T ss_pred CCCCEE--EEecccHHHHhHHHHHHHHHHHcCCCEEEe--CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH---HHHHH
Confidence 345755 466665443346678999999999866652 1345565432 221 44556665443332 22333
Q ss_pred HHH-c-CCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc-ccCCHH
Q 018519 145 AER-A-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-GVLTAE 221 (354)
Q Consensus 145 a~~-~-G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-Gi~~~~ 221 (354)
+.+ + ||-.++ .. ..+.|.|. + +| .......+.+++..+.++... ||.++|
T Consensus 150 ia~~~~gFIY~V-s~-~GvTG~~~-----~--~~------------------~~~~~~i~~vk~~~~~Pv~vGFGI~~~e 202 (250)
T PLN02591 150 IAEASEGFVYLV-SS-TGVTGARA-----S--VS------------------GRVESLLQELKEVTDKPVAVGFGISKPE 202 (250)
T ss_pred HHHhCCCcEEEe-eC-CCCcCCCc-----C--Cc------------------hhHHHHHHHHHhcCCCceEEeCCCCCHH
Confidence 222 2 443222 11 22222220 0 01 011121122222223333333 899999
Q ss_pred HHHHHHHhCCCEEEEe
Q 018519 222 DARIAVQAGAAGIIVS 237 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs 237 (354)
+++++.+.|+|+++|.
T Consensus 203 ~v~~~~~~GADGvIVG 218 (250)
T PLN02591 203 HAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHHhcCCCEEEEC
Confidence 9999999999999994
No 356
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.00 E-value=2.3 Score=41.73 Aligned_cols=125 Identities=20% Similarity=0.297 Sum_probs=74.6
Q ss_pred HHHhhhcCCcccccccC-CHHHHHHH----HHhCCCEEEEecCCcCCCCC----CcChHHHHHHHHHHhcCCccEEEcC-
Q 018519 202 AYVAGQIDRSLSWKGVL-TAEDARIA----VQAGAAGIIVSNHGARQLDY----VPATIMALEEVVKATQGRIPVFLDG- 271 (354)
Q Consensus 202 ~~~~~~~~~~~~w~Gi~-~~~~a~~~----~~~G~d~I~vs~~gg~~~~~----~~~~~~~l~~i~~~~~~~i~vi~~G- 271 (354)
+.+.+...|++...|.. +.++...+ .+.|-.-|++--.|-|.+.. -...+..++.+++.. .+|||+|-
T Consensus 202 ~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPVi~Dps 279 (352)
T PRK13396 202 KKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPIMIDPS 279 (352)
T ss_pred HHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCEEECCc
Confidence 34445566777777865 77776544 45688777775445444432 234567788777654 68999983
Q ss_pred ---CCCC--HHHHHHHHHcCcCEEEEcHHHHHHHh-hcCHHHH-HHHHHHHHHHHHHHHHHhCC
Q 018519 272 ---GVRR--GTDVFKALALGASGIFIGRPVVYSLA-AEGEKGV-RRVLEMLREEFELAMALSGC 328 (354)
Q Consensus 272 ---Gi~~--g~dv~kalalGAd~V~igr~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G~ 328 (354)
|.+. ..-...|+++|||+++|-..+--.-+ +.|...+ -.-++.|.++++..-...|.
T Consensus 280 H~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 280 HGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred ccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 3322 23445778899999999885432111 1232211 13456666677766666653
No 357
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.97 E-value=0.69 Score=44.64 Aligned_cols=160 Identities=24% Similarity=0.283 Sum_probs=91.8
Q ss_pred ceeEcCeeeccceEecccccccccCChhhHHHHHHHHHcCCcEEe------c--CCC---------------------CC
Q 018519 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL------S--SWS---------------------TS 112 (354)
Q Consensus 62 st~l~g~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~------s--~~~---------------------~~ 112 (354)
...|.|++|...+++.-=-+. + ...+.++....|+-++. . ... ..
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y~---s---~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKYK---D---FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCCC---C---HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 477889999999887642221 1 23556666666655441 1 000 01
Q ss_pred CHHHH------HhhCCCceEEEEeecCChH----HHHHHHHHHHHc---CCCEEEEecCCCCCCchhHHhhhccCCC--C
Q 018519 113 SVEEV------ASTGPGIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLP--P 177 (354)
Q Consensus 113 ~~eei------~~~~~~~~~~QLy~~~d~~----~~~~~~~~a~~~---G~~ai~i~vd~p~~g~r~~~~r~~~~~p--~ 177 (354)
+-+|- ++...+..|+-|-.-.|+. ...+.+++++.. |+..+.++.|.|...+|..++.--..+| .
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~ 227 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGA 227 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccc
Confidence 22221 1112245688775422221 234556666666 9999999999999887777664321223 1
Q ss_pred cCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
-++. -.++ .+...+..+++....|.+.=-||.+++|+.++++.|+|++-+
T Consensus 228 pIGs--g~gv-------~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 228 PIGS--GLGI-------QNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred cccC--CCCC-------CCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 1111 0011 123345556665444444444999999999999999999977
No 358
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.86 E-value=5.1 Score=37.61 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=56.0
Q ss_pred HHhhhcCCcccccccC-CHHHHHHH----HHhCCCEEEEecCCcCCCCC---CcChHHHHHHHHHHhcCCccEEEcCCCC
Q 018519 203 YVAGQIDRSLSWKGVL-TAEDARIA----VQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVFLDGGVR 274 (354)
Q Consensus 203 ~~~~~~~~~~~w~Gi~-~~~~a~~~----~~~G~d~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~i~vi~~GGi~ 274 (354)
.+.+...|.+...|.. +.++...+ .+.|.+-|++--.|-+..+. -...+..++.+++.. .+||+.|.+=.
T Consensus 127 ~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~~ds~Hs 204 (260)
T TIGR01361 127 EVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPIIVDPSHA 204 (260)
T ss_pred HHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEEEcCCCC
Confidence 3444455666656754 66665543 56788666663223222211 235577788777655 69999954433
Q ss_pred CH------HHHHHHHHcCcCEEEEcHHH
Q 018519 275 RG------TDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 275 ~g------~dv~kalalGAd~V~igr~~ 296 (354)
.| .-...|+++||++++|-+.+
T Consensus 205 ~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 205 AGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 33 33447888999999998854
No 359
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=92.76 E-value=0.56 Score=43.04 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=44.8
Q ss_pred HhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 228 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 228 ~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
=.|...+.+--.|| .+.|.+.+.+.++.+ ..++|.-|||||++.+.+....|||.+..|+.+
T Consensus 162 ~~g~~~~YlEagsg---a~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 162 YLGMPVVYLEAGSG---AGDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred HhCCeEEEEEecCC---CCCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 35677777743332 234555666544443 569999999999999988888999999999854
No 360
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.71 E-value=3.6 Score=37.27 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.++++.+.++|+|.|++...-.+ ...+....+.+.++++.. +++++. ++.|.+++.++..+|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 456899999999998877432111 011122334455555432 577776 6899999999999999998653
No 361
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.65 E-value=4.4 Score=38.87 Aligned_cols=128 Identities=17% Similarity=0.158 Sum_probs=78.2
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHH
Q 018519 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (354)
Q Consensus 125 ~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (354)
..+|+. ..+++.+.+.++++.+.|++++-++++... .+ ++ ..+.++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~--~~--d~----------------------------~~v~~lr 172 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGDL--ED--DI----------------------------ERIRAIR 172 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCCh--hh--HH----------------------------HHHHHHH
Confidence 334553 357777777888888889999999885321 00 00 0112222
Q ss_pred hhhcCCccccc--ccCCHHHHH----HHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 205 AGQIDRSLSWK--GVLTAEDAR----IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 205 ~~~~~~~~~w~--Gi~~~~~a~----~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
+...+..+..| +-.+.++|. .+.+.+++.|- +. ..+..++.+.++++.. ++||++++.+.+..|
T Consensus 173 ~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP-~~~~d~~~~~~L~~~~--~ipIa~~E~~~~~~~ 242 (316)
T cd03319 173 EAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP-VPAGDDDGLAYLRDKS--PLPIMADESCFSAAD 242 (316)
T ss_pred HhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCCHHHHHHHHhcC--CCCEEEeCCCCCHHH
Confidence 21111112111 113344444 45566777762 11 1234577888888866 799999999999999
Q ss_pred HHHHHHc-CcCEEEEcHH
Q 018519 279 VFKALAL-GASGIFIGRP 295 (354)
Q Consensus 279 v~kalal-GAd~V~igr~ 295 (354)
+.+.+.. ++|.|++--.
T Consensus 243 ~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 243 AARLAGGGAYDGINIKLM 260 (316)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 9999995 5888888643
No 362
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.50 E-value=8.2 Score=36.27 Aligned_cols=186 Identities=23% Similarity=0.318 Sum_probs=98.2
Q ss_pred eEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC--CceEEEEeecCChHHHHHHHHHHHHcCCC
Q 018519 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (354)
Q Consensus 74 i~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ 151 (354)
|+..|.+.-+ .+--...|+..++.|+-+.-+.. ..| .|+.||=. +.+-...+-+.+++.|--
T Consensus 48 viAGPCsvEs---~E~i~~~A~~vk~~Ga~~lRGga----------fKPRTSPYsFQGl---ge~gL~~l~~a~~~~Gl~ 111 (286)
T COG2876 48 VIAGPCSVES---EEQVRETAESVKAAGAKALRGGA----------FKPRTSPYSFQGL---GEEGLKLLKRAADETGLP 111 (286)
T ss_pred EEecCcccCC---HHHHHHHHHHHHHcchhhccCCc----------CCCCCCccccccc---CHHHHHHHHHHHHHcCCe
Confidence 5556665433 22224778888888887665432 223 56888832 344443333344455643
Q ss_pred EEEEecCCCCCCchhHHhhhcc-CCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccccc-CCHHH----HHH
Q 018519 152 AIALTVDTPRLGRREADIKNRF-TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGV-LTAED----ARI 225 (354)
Q Consensus 152 ai~i~vd~p~~g~r~~~~r~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi-~~~~~----a~~ 225 (354)
.+ ..+=.| |.-+.-..+ .+ -.++.+|+.++. +-+.+.+...|.+-..|. .+.|+ |+-
T Consensus 112 vv-tEvm~~----~~~e~~~~y~Di-lqvGARNMQNF~-----------LLke~G~~~kPvLLKRg~~aTieEwL~AAEY 174 (286)
T COG2876 112 VV-TEVMDV----RDVEAAAEYADI-LQVGARNMQNFA-----------LLKEVGRQNKPVLLKRGLSATIEEWLNAAEY 174 (286)
T ss_pred eE-EEecCH----HHHHHHHhhhhH-HHhcccchhhhH-----------HHHHhcccCCCeEEecCccccHHHHHHHHHH
Confidence 32 111111 111111111 00 012344544431 222344455666665563 35554 445
Q ss_pred HHHhCCCEEEEecCCcCCCCCC-cC--hHHHHHHHHHHhcCCccEEEcCCCCCHHH------HHHHHHcCcCEEEEcH
Q 018519 226 AVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPVFLDGGVRRGTD------VFKALALGASGIFIGR 294 (354)
Q Consensus 226 ~~~~G~d~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~d------v~kalalGAd~V~igr 294 (354)
.+..|-..|++.-.|=|..+.. .- ++.+++-+++.. ..|||+|=-=.+|.+ +..|+|.|||++|+--
T Consensus 175 I~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEV 250 (286)
T COG2876 175 ILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEV 250 (286)
T ss_pred HHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEe
Confidence 5678988899877776665543 22 345666666654 789999843333332 2356789999999864
No 363
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.37 E-value=0.68 Score=45.35 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhCCCEEEEecC----CcC--------CC-------------------------CCCcChHHHHHHHHHHh
Q 018519 219 TAEDARIAVQAGAAGIIVSNH----GAR--------QL-------------------------DYVPATIMALEEVVKAT 261 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~----gg~--------~~-------------------------~~~~~~~~~l~~i~~~~ 261 (354)
+.+..+++.++|+++|+|+-- |-| +. .....+|+.|.++++..
T Consensus 133 ~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 212 (344)
T cd02922 133 TEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT 212 (344)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc
Confidence 567778999999999998521 111 10 01235677888888766
Q ss_pred cCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 262 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 262 ~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
++|||+- ||.+.+|+.++...|+|++.+..
T Consensus 213 --~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 213 --KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred --CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 7899988 68999999999999999999875
No 364
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.36 E-value=5.8 Score=37.94 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=93.9
Q ss_pred hHHHHHHHHHcCCcEE-ecCC--C----------CCCHHHHHh-------hCCCceEEEEe-ecCChHHHHHHHHHHHHc
Q 018519 90 EYATARAASAAGTIMT-LSSW--S----------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERA 148 (354)
Q Consensus 90 e~~la~aa~~~G~~~~-~s~~--~----------~~~~eei~~-------~~~~~~~~QLy-~~~d~~~~~~~~~~a~~~ 148 (354)
|..-|+.+.++|...+ +|+. + ..+++|+.. ..+-|...=+= ...++..+.+.+++.+++
T Consensus 26 Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 26 NAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 4467888888887655 3332 1 124444432 22223333221 123777888999999999
Q ss_pred CCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc---------cc-C
Q 018519 149 GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK---------GV-L 218 (354)
Q Consensus 149 G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~---------Gi-~ 218 (354)
|+.+|.|. |... .+| .+.. + + +.+.. .+.....++..++....+.+..- |+ -
T Consensus 106 Gaagi~IE-Dq~~-pK~-----cg~~-~-~---~~lv~------~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 106 GAAAVHIE-DQVG-AKR-----CGHR-P-N---KEIVS------QEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCeEEEEe-cCCC-ccc-----cCCC-C-C---CcccC------HHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 98887663 3211 111 1110 0 0 00000 00112223333333222322111 21 1
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEE---EcCCCCCH-HHHHHHHHcCcCEEEEcH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRG-TDVFKALALGASGIFIGR 294 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---~~GGi~~g-~dv~kalalGAd~V~igr 294 (354)
..+-++...++|||+|.+ +| +.+.+.+.++.+.+ ++|++ ..+|- ++ ..+...-++|.+.|..|.
T Consensus 168 AI~Ra~aY~eAGAD~ifi--~~-------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~-~p~~s~~~L~~lGv~~v~~~~ 235 (292)
T PRK11320 168 AIERAQAYVEAGADMIFP--EA-------MTELEMYRRFADAV--KVPILANITEFGA-TPLFTTEELASAGVAMVLYPL 235 (292)
T ss_pred HHHHHHHHHHcCCCEEEe--cC-------CCCHHHHHHHHHhc--CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEECh
Confidence 334456778999999999 43 44577787888777 56773 33442 22 234444558999999998
Q ss_pred HHHHH
Q 018519 295 PVVYS 299 (354)
Q Consensus 295 ~~l~~ 299 (354)
..+++
T Consensus 236 ~~~~a 240 (292)
T PRK11320 236 SAFRA 240 (292)
T ss_pred HHHHH
Confidence 76654
No 365
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.36 E-value=0.83 Score=41.26 Aligned_cols=166 Identities=12% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCcEEe-----cCCC---CCCH---HHHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCC
Q 018519 92 ATARAASAAGTIMTL-----SSWS---TSSV---EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (354)
Q Consensus 92 ~la~aa~~~G~~~~~-----s~~~---~~~~---eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p 160 (354)
.-.+.+.++|+.+.= +.+. +..+ +++++...-+.=+.|.. .+++. .++...++|++.+.+|+.+.
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv-~~P~~---~i~~~~~~g~~~i~~H~E~~ 91 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMV-ENPER---YIEEFAEAGADYITFHAEAT 91 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEES-SSGGG---HHHHHHHHT-SEEEEEGGGT
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeee-ccHHH---HHHHHHhcCCCEEEEcccch
Confidence 455666777765331 2221 1233 45555543456677765 45654 45666788999999988643
Q ss_pred CCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEecC-
Q 018519 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVSNH- 239 (354)
Q Consensus 161 ~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~- 239 (354)
....+. +..+.+.-....+.+.--+..+..+...+ -+|.|.|=.-
T Consensus 92 ~~~~~~---------------------------------i~~ik~~g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~ 137 (201)
T PF00834_consen 92 EDPKET---------------------------------IKYIKEAGIKAGIALNPETPVEELEPYLD-QVDMVLVMSVE 137 (201)
T ss_dssp TTHHHH---------------------------------HHHHHHTTSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-
T ss_pred hCHHHH---------------------------------HHHHHHhCCCEEEEEECCCCchHHHHHhh-hcCEEEEEEec
Confidence 210000 11111110011111110012222222222 3788776332
Q ss_pred CcC-CCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 240 GAR-QLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 240 gg~-~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
.|. ....-+..++-+.++++.. +.++.|.+||||+.. -+.+..++|||.+.+|+.+
T Consensus 138 PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 138 PGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHH
Confidence 121 1112344555566655544 236999999999765 5667778999999999864
No 366
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.32 E-value=3.1 Score=37.54 Aligned_cols=125 Identities=19% Similarity=0.309 Sum_probs=69.3
Q ss_pred eecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcC
Q 018519 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (354)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (354)
|...+.+.+.+.++.+.++|++.+++-+=.+- + .. .....+++++....
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----------------g------------~i---D~~~~~~Li~~a~~ 114 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTED----------------G------------EI---DEEALEELIEAAGG 114 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETT----------------S------------SB----HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC----------------C------------Cc---CHHHHHHHHHhcCC
Confidence 55555667888888999999999987542111 0 00 01123334433222
Q ss_pred Ccc----cccccCCHHHH-HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 210 RSL----SWKGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 210 ~~~----~w~Gi~~~~~a-~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
-++ .+|-+.+++.+ ..+.+.|++.|--|| |. ......++.|.++.+..++++.|++-|||+. ..+.+-++
T Consensus 115 ~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG--g~--~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~ 189 (201)
T PF03932_consen 115 MPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG--GA--PTALEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVE 189 (201)
T ss_dssp SEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST--TS--SSTTTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHH
T ss_pred CeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC--CC--CCHHHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHH
Confidence 222 22345556655 467799999997644 32 1233346677777777667899999999975 44555555
Q ss_pred -cCcCEE
Q 018519 285 -LGASGI 290 (354)
Q Consensus 285 -lGAd~V 290 (354)
+|+..+
T Consensus 190 ~tg~~~~ 196 (201)
T PF03932_consen 190 ETGVREI 196 (201)
T ss_dssp HHT-SEE
T ss_pred hhCCeEE
Confidence 787765
No 367
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.31 E-value=0.34 Score=47.30 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=44.2
Q ss_pred HHHHHHH--HhCCCEEEEecCCcC----CCCC---CcCh---HHHHHHHHHHhcCCccEEE-cCCCCCHHHHHH----HH
Q 018519 221 EDARIAV--QAGAAGIIVSNHGAR----QLDY---VPAT---IMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----AL 283 (354)
Q Consensus 221 ~~a~~~~--~~G~d~I~vs~~gg~----~~~~---~~~~---~~~l~~i~~~~~~~i~vi~-~GGi~~g~dv~k----al 283 (354)
+-++.+. +.|+|.+.+---+.- ..+. ..+. .+.+.++.++. .+|+|+ +||+ +..++++ |+
T Consensus 188 ~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~ 264 (340)
T PRK12858 188 KTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFAC 264 (340)
T ss_pred HHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHH
Confidence 3455666 499999998322110 0011 1111 23455555554 677555 8887 6666665 55
Q ss_pred HcCc--CEEEEcHHHHH
Q 018519 284 ALGA--SGIFIGRPVVY 298 (354)
Q Consensus 284 alGA--d~V~igr~~l~ 298 (354)
..|| ++|.+||..-.
T Consensus 265 ~aGa~f~Gvl~GRniwq 281 (340)
T PRK12858 265 EAGADFSGVLCGRATWQ 281 (340)
T ss_pred HcCCCccchhhhHHHHh
Confidence 5899 99999997543
No 368
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.30 E-value=0.86 Score=43.59 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
.+.++.+.+.|+|+|.+ |.+....+....++.+.++++.+ ++||++- ++.+.+++.++..+|||+|.+.
T Consensus 132 ~~~i~~~~~~g~~~i~l--~~~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 132 EDLLRRAEAAGYKALVL--TVDTPVLGRRLTWDDLAWLRSQW--KGPLILK-GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHcCCCEEEE--ecCCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCCHHHHHHHHHCCCCEEEEc
Confidence 34566778899999998 32211111124567888888876 6898886 4899999999999999999884
No 369
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.28 E-value=2.8 Score=39.62 Aligned_cols=155 Identities=21% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCC----------CC---HHH----HHhhCCCceEEEEeecC
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------SS---VEE----VASTGPGIRFFQLYVYK 133 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~----------~~---~ee----i~~~~~~~~~~QLy~~~ 133 (354)
..|++++ +.+. .++.-...++.+.++|+.++-=.++. .. +.+ +++...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576655 3322 22323477888888887654211110 01 122 23332345677765555
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhh--cCCc
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ--IDRS 211 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 211 (354)
+.+.+.+.++.++++|+++|.++-..... ..+... ..+... .....+............++++.+.. ..|.
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~~~--~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipi 246 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPGPK--RGTGGLSGAPIRPLALRWVARLAARLQLDIPI 246 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--CccccC--CCCCccCcHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 66678889999999999999886332210 000000 000000 00000000000000011133333333 2344
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEE
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.-.||.+.+++.+++.+|||+|.+
T Consensus 247 ia~GGI~~~~da~~~l~~GAd~V~v 271 (289)
T cd02810 247 IGVGGIDSGEDVLEMLMAGASAVQV 271 (289)
T ss_pred EEECCCCCHHHHHHHHHcCccHheE
Confidence 4445899999999999999999988
No 370
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.24 E-value=0.38 Score=44.70 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCEEEEecC-----CcC-CCCCCcChHHH---HHHHHHHhcC--CccEEEc--------CCCCCHHHHH
Q 018519 220 AEDARIAVQAGAAGIIVSNH-----GAR-QLDYVPATIMA---LEEVVKATQG--RIPVFLD--------GGVRRGTDVF 280 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~-----gg~-~~~~~~~~~~~---l~~i~~~~~~--~i~vi~~--------GGi~~g~dv~ 280 (354)
.+.++++.++|+++|.+-.. .|+ ....-.+.-+. |..++++..+ +++|++= .|+...-.-.
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra 166 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHH
Confidence 34567788999999999321 111 00112233333 4444444444 6778776 3444444444
Q ss_pred HHHH-cCcCEEEEcHH
Q 018519 281 KALA-LGASGIFIGRP 295 (354)
Q Consensus 281 kala-lGAd~V~igr~ 295 (354)
++.+ +|||+|++-.|
T Consensus 167 ~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 167 KAYAEAGADGIFVEGL 182 (243)
T ss_pred HHHHHcCCCEEEeCCC
Confidence 5554 89999999765
No 371
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.09 E-value=11 Score=35.48 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=99.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHH-------hhCC--CceEEEEeecCChHHH
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 138 (354)
|.++.|+.-..-.+.++-..+.+-+.+.|+..++ ++ +.+.+.+|-. +... .+.++++- ..+....
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5566777444333444445777777778875544 22 2345665432 2222 35566653 3466667
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc---
Q 018519 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK--- 215 (354)
Q Consensus 139 ~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--- 215 (354)
.++++.++++|++++.+. .|.. . +. +.. ....-+.++.+....|.+...
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y-----------~-~~--~~~------------~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYY-----------N-KP--SQE------------GIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcC-----------C-CC--CHH------------HHHHHHHHHHhcCCCCEEEEECcc
Confidence 788899999999999884 2321 0 10 000 001113334443333433222
Q ss_pred --cc-CCHHHHHHHHHhCCCEEE-EecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 --GV-LTAEDARIAVQAGAAGII-VSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 --Gi-~~~~~a~~~~~~G~d~I~-vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
|+ ++++...++.+ ...|+ + .+.. .+...+.++.+..++++.|+ .|. ...++..+.+|+++++
T Consensus 134 ~tg~~l~~~~~~~L~~--~~~v~gi-------K~s~-~d~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~l~~G~~G~i 199 (281)
T cd00408 134 RTGVDLSPETIARLAE--HPNIVGI-------KDSS-GDLDRLTRLIALLGPDFAVL-SGD---DDLLLPALALGADGAI 199 (281)
T ss_pred ccCCCCCHHHHHHHhc--CCCEEEE-------EeCC-CCHHHHHHHHHhcCCCeEEE-Ecc---hHHHHHHHHcCCCEEE
Confidence 43 68888888876 22222 1 1111 34455556666554444443 342 5678889999999999
Q ss_pred EcHHH
Q 018519 292 IGRPV 296 (354)
Q Consensus 292 igr~~ 296 (354)
.|..-
T Consensus 200 ~~~~n 204 (281)
T cd00408 200 SGAAN 204 (281)
T ss_pred ehHHh
Confidence 98743
No 372
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.08 E-value=2.9 Score=40.64 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHH--hCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 221 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 221 ~~a~~~~~--~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+-+..+.+ +|+|.|+|+-.-|+ ....++.+.+|++..+ +++ |..|.|-|++-+...+..|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 44555566 59999999753232 2344677888887663 455 55689999998888888999998544
No 373
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.02 E-value=1 Score=41.63 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=55.5
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
.|.++-+-...+...+.+.+++++++|+++|.++...| |. | .. ....+.+
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~--g~-----------~----~a-------------~~~~I~~ 184 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYP--GK-----------P----YA-------------DMDLLKI 184 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCC--CC-----------c----hh-------------hHHHHHH
Confidence 56777775544444567888999999999997642111 00 0 00 0112444
Q ss_pred HHhhhc-CCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQI-DRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~~-~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+... .|.++-.||.+.+||....++|||+|.|
T Consensus 185 i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 185 LSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 544443 5566656899999999999999999988
No 374
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=91.97 E-value=0.91 Score=43.62 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=52.2
Q ss_pred HHHHHHHHHhC---CCEEEEecCCcCCCCCCcChHHHHHHHHHHh---c-CCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 220 AEDARIAVQAG---AAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G---~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.++|..+.+++ +|.|.++|.+++ .|. +.+.+.++++++ + .++.|+++||| +...+.+..++|+|.+.+
T Consensus 198 v~eal~~~~~~~~~~d~I~lDn~~~~---~G~-~~~~~~~~~~~l~~~g~~~~~ieaSGgI-~~~~i~~~a~~gvD~isv 272 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLDTPSSR---RGV-FRYLIREVRWALDIRGYKHVKIFVSGGL-DEEDIKELEDVGVDAFGV 272 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEECCCCCC---CCC-HHHHHHHHHHHHHhCCCCCeEEEEeCCC-CHHHHHHHHHcCCCEEEC
Confidence 45677777774 899999886532 111 334455555554 2 46889999999 888888888899999999
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|+...
T Consensus 273 Gs~~~ 277 (302)
T cd01571 273 GTAIS 277 (302)
T ss_pred CcccC
Confidence 98553
No 375
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.94 E-value=0.81 Score=41.33 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEc-----CCCCCH--------HHHHHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFKAL 283 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~-----GGi~~g--------~dv~kal 283 (354)
+.+.+++..|.+.|||-|-+..+- ...+--|++..+..+++.. ++||.+- |++... .|+..+.
T Consensus 7 v~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp ESSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 358899999999999999996531 1112346677888888766 7787663 333332 4667777
Q ss_pred HcCcCEEEEcH
Q 018519 284 ALGASGIFIGR 294 (354)
Q Consensus 284 alGAd~V~igr 294 (354)
.+|||++.+|-
T Consensus 83 ~~GadG~VfG~ 93 (201)
T PF03932_consen 83 ELGADGFVFGA 93 (201)
T ss_dssp HTT-SEEEE--
T ss_pred HcCCCeeEEEe
Confidence 89999999994
No 376
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.82 E-value=6 Score=35.84 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
+.+.++.+.++|+|.|++...-... ..+....+.+.++++. ..++++. ++.+.+++.++..+|+|.+.++
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~-p~~~~~~~~i~~~~~~--~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPR-PDGETLAELVKRIKEY--PGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCC-CCCCCHHHHHHHHHhC--CCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 5678999999999988875421110 0012223444444442 3677775 5789999999999999999774
No 377
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.63 E-value=1.2 Score=41.44 Aligned_cols=74 Identities=26% Similarity=0.265 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEc-----CCCCCH--------HHHHHHH
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRRG--------TDVFKAL 283 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~-----GGi~~g--------~dv~kal 283 (354)
+.+.+++..|.+.|||-|-+... -...+--|++..+..+++.+ ++||.+- |++... .|+..+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~--L~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~ 83 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAA--PKEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVR 83 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccC--cCCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999988542 11222356677788888876 6777753 444332 4666667
Q ss_pred HcCcCEEEEcH
Q 018519 284 ALGASGIFIGR 294 (354)
Q Consensus 284 alGAd~V~igr 294 (354)
.+|||+|.+|-
T Consensus 84 ~~GadGvV~G~ 94 (248)
T PRK11572 84 ELGFPGLVTGV 94 (248)
T ss_pred HcCCCEEEEee
Confidence 79999999994
No 378
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.59 E-value=0.91 Score=40.43 Aligned_cols=116 Identities=23% Similarity=0.266 Sum_probs=76.5
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHh
Q 018519 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (354)
Q Consensus 126 ~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
.+-++...+.+...+.++.+.+.|++.+.++...+.. + .+.+...
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~--~---------------------------------e~~~~~~ 58 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP--A---------------------------------ELISQLR 58 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH--H---------------------------------HHHHHHH
Confidence 4555666788998899999999999999998765531 0 0111111
Q ss_pred hhcCCcc-ccc-ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHH
Q 018519 206 GQIDRSL-SWK-GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 283 (354)
Q Consensus 206 ~~~~~~~-~w~-Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kal 283 (354)
... +.. ... .++..+++..|.++|+|+|.+ +|-+ + + +.+.++.. +++.+ -| ..|..++.+|.
T Consensus 59 ~~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~-p~~~------~---~-~~~~~~~~--~~~~i-~G-~~t~~e~~~A~ 122 (187)
T PRK07455 59 EKL-PECIIGTGTILTLEDLEEAIAAGAQFCFT-PHVD------P---E-LIEAAVAQ--DIPII-PG-ALTPTEIVTAW 122 (187)
T ss_pred HhC-CCcEEeEEEEEcHHHHHHHHHcCCCEEEC-CCCC------H---H-HHHHHHHc--CCCEE-cC-cCCHHHHHHHH
Confidence 111 111 222 356789999999999999954 3321 1 2 22333333 45544 34 99999999999
Q ss_pred HcCcCEEEE
Q 018519 284 ALGASGIFI 292 (354)
Q Consensus 284 alGAd~V~i 292 (354)
.+|||.|.+
T Consensus 123 ~~Gadyv~~ 131 (187)
T PRK07455 123 QAGASCVKV 131 (187)
T ss_pred HCCCCEEEE
Confidence 999999987
No 379
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.46 E-value=0.59 Score=44.26 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCcCCCCCCcCh---HHHHHHHHHHhcCCccEEEcCCCCCHHHHHH----HHHcCcCEEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNHGARQLDYVPAT---IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFI 292 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~---~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~k----alalGAd~V~i 292 (354)
.+.+..+.+.|+|+|++.|+-|-. ...+. .+.+..+++..+ ++ +...|. .+-.|+++ |-.+|||+|++
T Consensus 23 ~~li~~l~~~Gv~Gl~~~GstGE~--~~Lt~eEr~~l~~~~~~~~~-~v-i~gvg~-~~~~~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 23 KKHCENLISKGIDYVFVAGTTGLG--PSLSFQEKLELLKAYSDITD-KV-IFQVGS-LNLEESIELARAAKSFGIYAIAS 97 (279)
T ss_pred HHHHHHHHHcCCcEEEEcccCCCc--ccCCHHHHHHHHHHHHHHcC-CE-EEEeCc-CCHHHHHHHHHHHHHcCCCEEEE
Confidence 455677889999999997764421 11222 233444555552 32 444443 33444442 23389999999
Q ss_pred cHHHHHHHhhcCHHHHHHHHHHHHH
Q 018519 293 GRPVVYSLAAEGEKGVRRVLEMLRE 317 (354)
Q Consensus 293 gr~~l~~~~~~G~~gv~~~l~~l~~ 317 (354)
..|+++.. ..++++.+++..+.+
T Consensus 98 ~~P~y~~~--~~~~~i~~yf~~v~~ 120 (279)
T cd00953 98 LPPYYFPG--IPEEWLIKYFTDISS 120 (279)
T ss_pred eCCcCCCC--CCHHHHHHHHHHHHh
Confidence 99987631 135677777776666
No 380
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.38 E-value=13 Score=35.03 Aligned_cols=184 Identities=16% Similarity=0.133 Sum_probs=97.7
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe--cCC---CCCCHHHHHh-------hCC--CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~~---~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-..-.+.++-..+.+-+.+.|+...+ ++. .+.+.+|..+ ... .+.++++- ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35666777433333444445677777778875443 222 2456654322 222 35566653 356777
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-- 215 (354)
..++++.|+++|++++.+.- |.. . +. +.. ....-.+++.+....|.+.+.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~-----------~-~~--~~~------------~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYY-----------N-KP--SQE------------GLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--ccc-----------C-CC--CHH------------HHHHHHHHHHhcCCCCEEEEECh
Confidence 88899999999999988752 321 0 10 000 001112333333333333222
Q ss_pred ---cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 ---GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 ---Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
|. ++++...++.+. ...+-+= +. ..+...+.++.+..++++.|+ +|. ...++.++.+|+++++
T Consensus 136 ~~~g~~ls~~~~~~L~~~-p~v~giK-------~s-~~~~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~~~~G~~G~~ 202 (284)
T cd00950 136 GRTGVNIEPETVLRLAEH-PNIVGIK-------EA-TGDLDRVSELIALCPDDFAVL-SGD---DALTLPFLALGGVGVI 202 (284)
T ss_pred hHhCCCCCHHHHHHHhcC-CCEEEEE-------EC-CCCHHHHHHHHHhCCCCeEEE-eCC---hHhHHHHHHCCCCEEE
Confidence 43 688888888764 2222221 11 112344555655554455444 342 3446678889999999
Q ss_pred EcHHHH
Q 018519 292 IGRPVV 297 (354)
Q Consensus 292 igr~~l 297 (354)
.|...+
T Consensus 203 s~~~n~ 208 (284)
T cd00950 203 SVAANV 208 (284)
T ss_pred ehHHHh
Confidence 888643
No 381
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=91.34 E-value=11 Score=35.20 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=56.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCC-------------cChHHHHHHHHHHh---cCCccEEEcCCCCCHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYV-------------PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~-------------~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv 279 (354)
.|.+.+.+..+.++|++.|.. .=||-.+++ .+.+..+.++.+.. +.+..|++.+ +++..++
T Consensus 146 ~vfs~~Qa~~aa~Aga~~isp--fvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS-~r~~~~v 222 (252)
T cd00439 146 LIFSIAQYEAVADAGTSVASP--FVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWAS-FSDTLYV 222 (252)
T ss_pred eecCHHHHHHHHHcCCCEEEE--eccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEe-eCCHHHH
Confidence 578999999999999998876 323211111 15556566666544 2356676655 9999999
Q ss_pred HHHHHcCcCEEEEcHHHHHHH
Q 018519 280 FKALALGASGIFIGRPVVYSL 300 (354)
Q Consensus 280 ~kalalGAd~V~igr~~l~~~ 300 (354)
.+.+ |+|.|-+.-..+..+
T Consensus 223 ~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 223 APLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred HHhh--CCCeeecCHHHHHHH
Confidence 7665 999999998777655
No 382
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=91.07 E-value=0.99 Score=41.62 Aligned_cols=63 Identities=22% Similarity=0.392 Sum_probs=50.6
Q ss_pred HHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 226 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 226 ~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
....++|+|+++|+. .+.++..+.|..++++. ++||++-+|+ +.+-+.+.|.. ||++.+|+-+
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~l 235 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSL 235 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEE
Confidence 567789999998763 24688889999888887 6999999998 46667677766 9999999843
No 383
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.95 E-value=0.79 Score=42.58 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=53.7
Q ss_pred cccccccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHHHHHHHHHHh-cC--CccEEEcCCCCCH---HH--
Q 018519 211 SLSWKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMALEEVVKAT-QG--RIPVFLDGGVRRG---TD-- 278 (354)
Q Consensus 211 ~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~~l~~i~~~~-~~--~i~vi~~GGi~~g---~d-- 278 (354)
++..-++.+.-.|+.+.++|+|+|.++++++. ..|.+.-+++.+....+.+ +. ..||++|.--.++ ++
T Consensus 13 ~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~ 92 (240)
T cd06556 13 RFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAF 92 (240)
T ss_pred eEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHH
Confidence 34444556777899999999999999886432 1344444554333333222 21 4799999876655 44
Q ss_pred --HHHHHHcCcCEEEEc
Q 018519 279 --VFKALALGASGIFIG 293 (354)
Q Consensus 279 --v~kalalGAd~V~ig 293 (354)
+.+.+..||++|-|-
T Consensus 93 ~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 93 ELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHcCCcEEEEc
Confidence 345666999999993
No 384
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=90.91 E-value=1.1 Score=42.38 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhC-CCEEEEecCCcCCCCCCcChHHHHHHHHHHh----cCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 218 LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 218 ~~~~~a~~~~~~G-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
.+.+++..+.++| +|+|.+++.+-.+ ..+....+ +..+++ ..++.++++|||. .+.+.....+|.|.+.+
T Consensus 192 ~~~~~~~~~~~~~~~d~irlDs~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~Sggi~-~~~i~~~~~~gvd~~gv 266 (281)
T cd00516 192 DTLEEALEAAKAGGADGIRLDSGSPEE---LDPAVLIL-KARAHLDGKGLPRVKIEASGGLD-EENIRAYAETGVDVFGV 266 (281)
T ss_pred CCHHHHHHHHhcCCCCEEEeCCCChHH---HHHHHHHH-HHHHhhhhcCCCceEEEEeCCCC-HHHHHHHHHcCCCEEEe
Confidence 4589999999999 9999987643211 11111111 122211 1367899999997 77776766799999999
Q ss_pred cHHHH
Q 018519 293 GRPVV 297 (354)
Q Consensus 293 gr~~l 297 (354)
|+.+.
T Consensus 267 G~~~~ 271 (281)
T cd00516 267 GTLLH 271 (281)
T ss_pred Ccccc
Confidence 98654
No 385
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=90.91 E-value=0.71 Score=43.27 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCC--CCCcChHHHHHHHHHHhcC--CccEEEcCCCCCHH--HHHHHHHcCcCEEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGT--DVFKALALGASGIFI 292 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~i~vi~~GGi~~g~--dv~kalalGAd~V~i 292 (354)
..+||+.+.+.|+|+|+|.|.+..-. +.++.+..++..+...++. .+|+=++= +++.. -+.-|.+.|||+|=+
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~Gvnv-L~nd~~aal~iA~a~ga~FIRv 108 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINV-LRNDAVAALAIAMAVGAKFIRV 108 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeee-ecCCCHHHHHHHHHhCCCEEEE
Confidence 56899999999999999999987533 4566666666666554432 34522211 23222 233455689999877
Q ss_pred c
Q 018519 293 G 293 (354)
Q Consensus 293 g 293 (354)
-
T Consensus 109 ~ 109 (257)
T TIGR00259 109 N 109 (257)
T ss_pred c
Confidence 4
No 386
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.86 E-value=1.1 Score=41.92 Aligned_cols=73 Identities=26% Similarity=0.316 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 296 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~ 296 (354)
...+.|....++||++|.|-.-. .+-..+++.|..+++.+ ++||+.-==|-++.++.+|.++|||+|.+=-.+
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred CHHHHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 34567788899999999984321 11233567788888887 799999888999999999999999999875433
No 387
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=90.78 E-value=3.6 Score=37.77 Aligned_cols=125 Identities=16% Similarity=0.238 Sum_probs=71.3
Q ss_pred eecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcC
Q 018519 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (354)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (354)
|...+.+.+.+-++.++++|++.+++.+-.+-. .+. ...+.+++.....
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg---------~iD----------------------~~~le~Li~aA~g 115 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALTADG---------NID----------------------MPRLEKLIEAAGG 115 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeecCCC---------ccC----------------------HHHHHHHHHHccC
Confidence 444455678899999999999999875533310 000 1112333332222
Q ss_pred Ccccc----cccCCHHHH-HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 210 RSLSW----KGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 210 ~~~~w----~Gi~~~~~a-~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
-.+++ +-+.++..| .++.+.|+.-|-- |||. ....-..+.|.++.+..++++.|++-|||+...=..=...
T Consensus 116 L~vTFHrAFD~~~d~~~ale~li~~Gv~RILT--sGg~--~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~ 191 (241)
T COG3142 116 LGVTFHRAFDECPDPLEALEQLIELGVERILT--SGGK--ASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELVLL 191 (241)
T ss_pred CceeeehhhhhcCCHHHHHHHHHHCCCcEEec--CCCc--CchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHh
Confidence 22222 233445554 6889999999876 5554 2223334455555555567898999999975443322345
Q ss_pred cCcCE
Q 018519 285 LGASG 289 (354)
Q Consensus 285 lGAd~ 289 (354)
+|+.-
T Consensus 192 tg~~e 196 (241)
T COG3142 192 TGVTE 196 (241)
T ss_pred cCchh
Confidence 77643
No 388
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=90.67 E-value=1 Score=41.56 Aligned_cols=73 Identities=29% Similarity=0.370 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCC--CCCcChHHHHHHHHHHhcC--CccEEEcCCCCCHHHHH--HHHHcCcCEEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQG--RIPVFLDGGVRRGTDVF--KALALGASGIFI 292 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~--~i~vi~~GGi~~g~dv~--kalalGAd~V~i 292 (354)
...||.++++.|+|+|+|.|+|-..+ +.++.+..+...+.+.+.. .+||=.+= +|+..-.. -|.+.||+++=+
T Consensus 36 A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNV-LrNd~vaA~~IA~a~gA~FIRV 114 (263)
T COG0434 36 AVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNV-LRNDAVAALAIAYAVGADFIRV 114 (263)
T ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeee-eccccHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999987533 4566666655555443321 45543322 23222222 334479998854
No 389
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.37 E-value=1.6 Score=43.11 Aligned_cols=43 Identities=30% Similarity=0.506 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 249 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 249 ~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+|+.|.++++.. ++||++= ||-+.+|+.++..+|+|+|.++.
T Consensus 215 ~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 215 LSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 4578888888876 7899987 59999999999999999998875
No 390
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=90.21 E-value=0.81 Score=43.30 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHhCCCEEEEec--------CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 217 VLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
++++|.|+.|.++|+-++..-- .||- .-.++.+.+.+|++++ ++|||+==-+..-.++....++|+|
T Consensus 17 v~~~eqa~iae~aga~avm~le~~p~d~r~~ggv---~R~~~p~~I~~I~~~V--~iPVig~~kigh~~Ea~~L~~~GvD 91 (287)
T TIGR00343 17 VVNPEQAKIAEEAGAVAVMALERVPADIRASGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVD 91 (287)
T ss_pred eCCHHHHHHHHHcCceEEEeeccCchhhHhcCCe---eecCCHHHHHHHHHhC--CCCEEEEeeccHHHHHHHHHHcCCC
Confidence 5799999999999999987621 1221 1134567788999988 9999987777777777777779999
Q ss_pred EEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 018519 289 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 335 (354)
Q Consensus 289 ~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 335 (354)
.+= .+-.+ .-..++++.+++++ .....+|++++.|-.
T Consensus 92 iID-eTe~l--------rPade~~~~~K~~f-~vpfmad~~~l~EAl 128 (287)
T TIGR00343 92 YID-ESEVL--------TPADWTFHIDKKKF-KVPFVCGARDLGEAL 128 (287)
T ss_pred EEE-ccCCC--------CcHHHHHHHHHHHc-CCCEEccCCCHHHHH
Confidence 993 32111 11356788888888 678888999998863
No 391
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=90.18 E-value=0.78 Score=43.36 Aligned_cols=104 Identities=25% Similarity=0.233 Sum_probs=73.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEec--------CCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 217 VLTAEDARIAVQAGAAGIIVSN--------HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~--------~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
+.+++.|+.|.++|+-++.+-- .||- .-..+.+.+.+|++.+ ++|||+==-+..-.++....++|+|
T Consensus 15 v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v---~R~~~~~~I~~Ik~~V--~iPVIGi~K~~~~~Ea~~L~eaGvD 89 (283)
T cd04727 15 VTNAEQARIAEEAGAVAVMALERVPADIRAAGGV---ARMADPKMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVD 89 (283)
T ss_pred eCCHHHHHHHHHcCceEEeeeccCchhhhhcCCe---eecCCHHHHHHHHHhC--CCCeEEeeehhHHHHHHHHHHcCCC
Confidence 5799999999999999998721 1221 1134567788888888 8999976555556777666779999
Q ss_pred EEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhc
Q 018519 289 GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 335 (354)
Q Consensus 289 ~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~ 335 (354)
.|- ++- -..-+..+++.+++++ ..+..++++++.|-.
T Consensus 90 iID-aT~--------r~rP~~~~~~~iK~~~-~~l~MAD~stleEal 126 (283)
T cd04727 90 MID-ESE--------VLTPADEEHHIDKHKF-KVPFVCGARNLGEAL 126 (283)
T ss_pred EEe-ccC--------CCCcHHHHHHHHHHHc-CCcEEccCCCHHHHH
Confidence 993 321 1111456788888887 677788999988863
No 392
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=89.88 E-value=4.5 Score=39.52 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHH
Q 018519 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (354)
+.+...-+-...|.+.+.++++.++++|++.+.+|= |-++.+.... .+ .+-..++
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg~~~-----~p-------------ad~~~i~ 195 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKGLKT-----GP-------------ADWEAIK 195 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcCCCC-----CC-------------cCHHHHH
Confidence 356666666678999999999999999999998873 3233221101 01 1223456
Q ss_pred HHHhhhc-CCcccccccCCHHHHHHHHH-hCCCEEEE
Q 018519 202 AYVAGQI-DRSLSWKGVLTAEDARIAVQ-AGAAGIIV 236 (354)
Q Consensus 202 ~~~~~~~-~~~~~w~Gi~~~~~a~~~~~-~G~d~I~v 236 (354)
.+++.+. .|.+.=.+|.+.+|+.++.+ .|+|+|-+
T Consensus 196 ~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 196 AVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 6666655 33343336999999999988 99999976
No 393
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=89.86 E-value=1.6 Score=38.28 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=47.0
Q ss_pred HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 224 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 224 ~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
....+.++|+|-| +.+- ....+.++.+.. .+|||+-|=|++-+|+..||..||-+|.-..--+|
T Consensus 115 ~~i~~~~pD~iEv-------LPGv--~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 115 KQIEKSEPDFIEV-------LPGV--MPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred HHHHHcCCCEEEE-------cCcc--cHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeecchhhc
Confidence 4556688888877 2221 124566666655 79999999999999999999999998875544444
No 394
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.84 E-value=6.3 Score=36.89 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=20.1
Q ss_pred ccCCHHHHHHHHHhCCCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~v 236 (354)
||.++++++++.++|+|+++|
T Consensus 206 GI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 206 GISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 788999999999999999998
No 395
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.78 E-value=9.7 Score=35.63 Aligned_cols=68 Identities=24% Similarity=0.457 Sum_probs=43.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCC--cChHHHHHHHHHHhcCCccEEEc---------------CCCCCHHH--HHHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD---------------GGVRRGTD--VFKAL 283 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~---------------GGi~~g~d--v~kal 283 (354)
++.....|-+-|++.=.|- .+... ..++..++.+++ . ..|||+| ||.|.-.- +..|+
T Consensus 136 aeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAv 211 (258)
T TIGR01362 136 VEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAV 211 (258)
T ss_pred HHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 5566778888888865553 22111 234556766655 3 5899987 55554332 23578
Q ss_pred HcCcCEEEEcH
Q 018519 284 ALGASGIFIGR 294 (354)
Q Consensus 284 alGAd~V~igr 294 (354)
+.|||++++-.
T Consensus 212 A~GaDGl~iEv 222 (258)
T TIGR01362 212 AVGIDGLFMET 222 (258)
T ss_pred HhCCCEEEEEe
Confidence 89999999986
No 396
>PLN02411 12-oxophytodienoate reductase
Probab=89.76 E-value=23 Score=35.30 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=42.9
Q ss_pred ceeEcCeeeccceEecccccccccCChh-----hHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChH
Q 018519 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (354)
Q Consensus 62 st~l~g~~l~~Pi~iAPm~~~~l~~~~~-----e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~ 136 (354)
..+|.+.++++-|++|||+... . .++ ....-+.-++-| .+++++....+.+ ....+ ....+|.....+
T Consensus 15 P~~ig~~~lkNRiv~aPm~~~~-~-~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~~--~~~gi~~d~~i~ 87 (391)
T PLN02411 15 PYKMGRFDLSHRVVLAPMTRCR-A-LNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGFP--HVPGIYSDEQVE 87 (391)
T ss_pred CeeECCEEEcccCEECCcCcCc-C-CCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcCC--CCCccCCHHHHH
Confidence 4678899999999999996432 2 222 123222223334 6777654332221 11111 111233211223
Q ss_pred HHHHHHHHHHHcCCCE
Q 018519 137 VVAQLVRRAERAGFKA 152 (354)
Q Consensus 137 ~~~~~~~~a~~~G~~a 152 (354)
-++++++.+.+.|+++
T Consensus 88 ~~~~l~~avH~~G~~i 103 (391)
T PLN02411 88 AWKKVVDAVHAKGSII 103 (391)
T ss_pred HHHHHHHHHHhcCCEE
Confidence 4555666667778775
No 397
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.63 E-value=1.1 Score=42.89 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=50.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC-----CCCCCcChHHH----HHHHHHHhcCCccEEEcC--CCCCHHHH---HH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIMA----LEEVVKATQGRIPVFLDG--GVRRGTDV---FK 281 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~-----~~~~~~~~~~~----l~~i~~~~~~~i~vi~~G--Gi~~g~dv---~k 281 (354)
|+.+.-.|+.+.++|.++|.+|+++=. ..|.+.-+++. +.+|.+.+ ++||++|. |..++..+ ++
T Consensus 23 ~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~v~r~V~ 100 (292)
T PRK11320 23 GTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAFNIARTVK 100 (292)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHHHHHHHH
Confidence 555667899999999999999886411 13445444443 33444444 79999874 56677776 34
Q ss_pred -HHHcCcCEEEE
Q 018519 282 -ALALGASGIFI 292 (354)
Q Consensus 282 -alalGAd~V~i 292 (354)
....||.++.|
T Consensus 101 ~~~~aGaagi~I 112 (292)
T PRK11320 101 SMIKAGAAAVHI 112 (292)
T ss_pred HHHHcCCeEEEE
Confidence 34589999888
No 398
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.62 E-value=10 Score=34.44 Aligned_cols=67 Identities=15% Similarity=0.014 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
-+.++...+.++|++.|-++.+-+.-. .+ +++.+ .+..+ .--.++.-++.|.+|.+-|..+|+|.|+
T Consensus 86 ptlkeVd~L~~~Ga~IIA~DaT~R~RP-~~--~~~~~---i~~~k-~~~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 86 PTLKEVDALAEAGADIIAFDATDRPRP-DG--DLEEL---IARIK-YPGQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred ccHHHHHHHHHCCCcEEEeecccCCCC-cc--hHHHH---HHHhh-cCCcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 478999999999999999987654222 22 33332 22221 2335566678999999999999999984
No 399
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=89.61 E-value=2.7 Score=40.53 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=74.4
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCcccc-ccCCccCcCcccchhhHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~ 201 (354)
-|.++-|-+ +.+.+.+.++.++++|+++|.++ ++-..+-+ -+.... .|. ..+ ..+++.....+....-+.
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~--~~~---~~~~~GGLSG~~ikp~al~~v~ 232 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK--KPV---LANETGGLSGPPLKPIALRVVA 232 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc--ccc---cCcCCCCcCcccchHHHHHHHH
Confidence 578888743 78888999999999999998764 32221110 011100 000 000 011111111001111233
Q ss_pred HHHhhhc--CCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHH-HHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 202 AYVAGQI--DRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMA-LEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 202 ~~~~~~~--~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~-l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
++..... .|.++-.||.+.+||..-+.+||+.+.|... -.+.||.-... ...+.+++. .-|+.|-+|
T Consensus 233 ~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta---l~~~Gp~i~~~I~~~l~~~l~-------~~g~~si~d 302 (310)
T COG0167 233 ELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTA---LIYKGPGIVKEIIKGLARWLE-------EKGFESIQD 302 (310)
T ss_pred HHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeee---eeeeCchHHHHHHHHHHHHHH-------HcCCCCHHH
Confidence 3333332 4455666999999999999999999998221 13345554432 344444432 256777776
Q ss_pred HH
Q 018519 279 VF 280 (354)
Q Consensus 279 v~ 280 (354)
+.
T Consensus 303 ~i 304 (310)
T COG0167 303 II 304 (310)
T ss_pred Hh
Confidence 64
No 400
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.49 E-value=1.2 Score=42.53 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=50.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHH----HHHHHHHHhcCCccEEEc--CCCCCHHHH---HH-
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLD--GGVRRGTDV---FK- 281 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~i~vi~~--GGi~~g~dv---~k- 281 (354)
|+.+.-.|+.+.++|.++|.+|+++-. ..|.+.-+++ .+.+|.+.+ ++||++| .|..++..+ ++
T Consensus 19 ~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~v~~tv~~ 96 (285)
T TIGR02317 19 GAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFNVARTVRE 96 (285)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHHHHHHHHH
Confidence 555667889999999999999886421 1343443433 334444444 7999987 466667775 44
Q ss_pred HHHcCcCEEEEc
Q 018519 282 ALALGASGIFIG 293 (354)
Q Consensus 282 alalGAd~V~ig 293 (354)
....||.++.|-
T Consensus 97 ~~~aG~agi~IE 108 (285)
T TIGR02317 97 MEDAGAAAVHIE 108 (285)
T ss_pred HHHcCCeEEEEe
Confidence 445899999884
No 401
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=89.48 E-value=7 Score=36.46 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=72.0
Q ss_pred eecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcC
Q 018519 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (354)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (354)
|...+.+.+.+.++.+.++|++.+++-+=.+- + .+ ....++++++....
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~d----------------g----~v-----------D~~~~~~Li~~a~~ 115 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVD----------------G----HV-----------DMPRMRKIMAAAGP 115 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC----------------C----Cc-----------CHHHHHHHHHHhcC
Confidence 44445567888888999999999987542221 0 00 01123333333222
Q ss_pred Ccccc----cccCCHHHH-HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 210 RSLSW----KGVLTAEDA-RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 210 ~~~~w----~Gi~~~~~a-~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
.++++ |-+.++..| +.+.+.|++.|--| ||.. .....++.|.++.+..++.+ |++-|||+ ...+.+-..
T Consensus 116 ~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTS--Gg~~--~a~~g~~~L~~lv~~a~~~~-Im~GgGV~-~~Nv~~l~~ 189 (248)
T PRK11572 116 LAVTFHRAFDMCANPLNALKQLADLGVARILTS--GQQQ--DAEQGLSLIMELIAASDGPI-IMAGAGVR-LSNLHKFLD 189 (248)
T ss_pred CceEEechhhccCCHHHHHHHHHHcCCCEEECC--CCCC--CHHHHHHHHHHHHHhcCCCE-EEeCCCCC-HHHHHHHHH
Confidence 22222 233455554 56899999999764 3321 12223445555555544444 88888886 555655557
Q ss_pred cCcCEEEEc
Q 018519 285 LGASGIFIG 293 (354)
Q Consensus 285 lGAd~V~ig 293 (354)
+|+..+=..
T Consensus 190 tG~~~~H~s 198 (248)
T PRK11572 190 AGVREVHSS 198 (248)
T ss_pred cCCCEEeeC
Confidence 999887543
No 402
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=89.32 E-value=2.1 Score=42.25 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 249 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 249 ~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+|+-|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.+..
T Consensus 211 ~tW~di~wlr~~~--~~PiivKg-V~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 211 LSWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CCHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHHcCCCEEEECC
Confidence 4677788777755 79998866 7899999999999999999975
No 403
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.21 E-value=12 Score=35.53 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHHHHHhCCCEEEEecCCcCCCC-CCcChHHHHHHHHHHhcCCccEEEc---------------CCCCCHH--HHHHHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLD---------------GGVRRGT--DVFKALA 284 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~---------------GGi~~g~--dv~kala 284 (354)
++...+.|-.-|++.=.|-+-.+ .-..++..++.+++.. ...|||+| ||-|.-. =+..|++
T Consensus 150 ae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA 228 (281)
T PRK12457 150 VSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMA 228 (281)
T ss_pred HHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45667788888888666644111 1234455677666532 25899987 4444322 2336778
Q ss_pred cCcCEEEEcHHHH--HHHhhcCHHHH-HHHHHHHHHHHHHHHHHhCC
Q 018519 285 LGASGIFIGRPVV--YSLAAEGEKGV-RRVLEMLREEFELAMALSGC 328 (354)
Q Consensus 285 lGAd~V~igr~~l--~~~~~~G~~gv-~~~l~~l~~el~~~m~~~G~ 328 (354)
.|||++++-..-= -++ +.|...+ -+.++.+.++++.+-...+.
T Consensus 229 ~GaDGl~iEvHpdP~~Al-sDg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 229 VGLAGLFLEAHPDPDRAR-CDGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred hCCCEEEEEecCCccccC-CCcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 9999999987210 011 2343222 13455666666655555443
No 404
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=89.05 E-value=7.2 Score=37.99 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
-+++.+.+..+.+.|++.+.|.. .....+..|..+++. ..|||.+-|..+-+++..|+.
T Consensus 95 tpfd~~svd~l~~~~v~~~KIaS-------~~~~n~pLL~~~A~~---gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 95 TPFDLESADFLEDLGVPRFKIPS-------GEITNAPLLKKIARF---GKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred EeCCHHHHHHHHhcCCCEEEECc-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHH
Confidence 34688899999999999999921 123346667666653 789999999999999988775
No 405
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=89.04 E-value=9 Score=37.56 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=60.9
Q ss_pred cCCHHHHHHHH-HhCC----CEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhc-------CCccEEEcCCCCCH-HH
Q 018519 217 VLTAEDARIAV-QAGA----AGIIVSN---HGARQLDYVPA--TIMALEEVVKATQ-------GRIPVFLDGGVRRG-TD 278 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~----d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~-------~~i~vi~~GGi~~g-~d 278 (354)
.+++++|+... +.|+ |.+-|+. ||-+- .+.| .++.|.+|.+.+. .++|++.=||=..+ ++
T Consensus 187 ~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk--~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~ 264 (350)
T PRK09197 187 YTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYK--PGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEE 264 (350)
T ss_pred cCCHHHHHHHHHHhCCCCcceEEeeecccccCCcC--CCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHH
Confidence 36899998876 4587 8888864 55432 1233 5678999988872 26999999998888 56
Q ss_pred HHHHHHcCcCEEEEcHHHHHH
Q 018519 279 VFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~~ 299 (354)
+.+++.+|..-|-+++-+-++
T Consensus 265 i~~ai~~GI~KINi~T~l~~a 285 (350)
T PRK09197 265 IREAVSYGVVKMNIDTDTQWA 285 (350)
T ss_pred HHHHHHCCCeeEEeCcHHHHH
Confidence 668999999999999976543
No 406
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.03 E-value=3.1 Score=39.72 Aligned_cols=106 Identities=20% Similarity=0.106 Sum_probs=56.0
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHc--CCCEEEEecCCCC-----CCchhHHhhhccCCCCcCccccccCCccCcCcc
Q 018519 122 PGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPR-----LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDE 194 (354)
Q Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~--G~~ai~i~vd~p~-----~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~ 194 (354)
..|.++-|-+..|.+.+.++++.+.++ |+++|.++ ++-. ...|.+ ..++.. ....++.......
T Consensus 157 ~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~id~~~~~-----~~~~~~---~~~gG~SG~~i~~ 227 (294)
T cd04741 157 SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVLDPERET-----VVLKPK---TGFGGLAGAYLHP 227 (294)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccccCCCCC-----cccCCC---CCCCCcCchhhHH
Confidence 357888886555666677788888887 88888753 1110 000100 000000 0000111000000
Q ss_pred cchhhHHHHHhhhc--CCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 195 ANDSGLAAYVAGQI--DRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 195 ~~~~~~~~~~~~~~--~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
.....+.++.+... .|.++-.||.+.+|+.+.+.+|||+|.|
T Consensus 228 ~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv 271 (294)
T cd04741 228 LALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQV 271 (294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeE
Confidence 01111233333332 3455656899999999999999999998
No 407
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=88.80 E-value=1.6 Score=40.46 Aligned_cols=75 Identities=31% Similarity=0.357 Sum_probs=49.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHHHHH----HHHHHhcCCccEEEcCCCCCH--HHH----HH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMALE----EVVKATQGRIPVFLDGGVRRG--TDV----FK 281 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~~l~----~i~~~~~~~i~vi~~GGi~~g--~dv----~k 281 (354)
++.+.-.|+.+.++|+|+|.+++++.. ..|.+.-+++.+. .|.+.. .+||++|+....+ .++ .+
T Consensus 15 ~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~~~~~v~~ 92 (243)
T cd00377 15 GAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALNVARTVRE 92 (243)
T ss_pred CCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHHH
Confidence 444556789999999999999886432 1344555554333 333333 7999999776433 234 34
Q ss_pred HHHcCcCEEEE
Q 018519 282 ALALGASGIFI 292 (354)
Q Consensus 282 alalGAd~V~i 292 (354)
.+..|+++|.+
T Consensus 93 ~~~~G~~gv~i 103 (243)
T cd00377 93 LEEAGAAGIHI 103 (243)
T ss_pred HHHcCCEEEEE
Confidence 44589999999
No 408
>PLN02535 glycolate oxidase
Probab=88.78 E-value=2.1 Score=42.22 Aligned_cols=43 Identities=26% Similarity=0.500 Sum_probs=36.1
Q ss_pred cChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 248 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 248 ~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
..+|+.|..+++.. ++|||+-| |-+++|+.++..+|+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~~--~~PvivKg-V~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSIT--NLPILIKG-VLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhcc--CCCEEEec-CCCHHHHHHHHhcCCCEEEEe
Confidence 34678888888765 78988855 999999999999999999885
No 409
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.72 E-value=4.2 Score=38.62 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=75.4
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEE-ecCCC----------CCCHH---HH----HhhCCCceEEEEeec
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-LSSWS----------TSSVE---EV----ASTGPGIRFFQLYVY 132 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~-~s~~~----------~~~~e---ei----~~~~~~~~~~QLy~~ 132 (354)
..|++++=++. .++.=...|+.+.++|..++ +.-.+ ..+.+ ++ ++...-|.++.|-
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-- 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-- 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC--
Confidence 45766654331 22323477777888887655 31110 01222 22 2222346777763
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC-cCccccccCCccCcCcccchhhHHHHHhhhcCCc
Q 018519 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (354)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (354)
.+.+...+.++.++++|+++|.+. ++-. |.. -+.++.. |. +.....+.+.... .....-+.++.+....|.
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~~-~~~~~~~--~~~~~~~gg~sg~~~~---~~~~~~i~~i~~~~~ipi 234 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTLI-NTLK-GMA-IDIETRK--PILGNVTGGLSGPAIK---PIALRMVYQVYKAVEIPI 234 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEE-CCCc-ccc-cccccCc--eeecCCcceecCcccc---hHHHHHHHHHHHhcCCCE
Confidence 244457788888999999998763 1110 100 0000000 00 0000000000000 001112333333334455
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEE
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.-.||.+++++.+++++|||+|.+
T Consensus 235 i~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 235 IGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5555899999999999999999988
No 410
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=88.64 E-value=23 Score=33.76 Aligned_cols=109 Identities=21% Similarity=0.320 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHh-CCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCH-HHHHHHHHcCcCE
Q 018519 217 VLTAEDARIAVQA-GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASG 289 (354)
Q Consensus 217 i~~~~~a~~~~~~-G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g-~dv~kalalGAd~ 289 (354)
...+++|+...+. |+|.+-++- ||-+.. +.| .++.|.+|.+.+ ++|++.=||=..+ +|+.|++.+|..-
T Consensus 155 ~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~--~~p~L~~~~L~~i~~~~--~~PlVlHGgSGip~~eI~~aI~~GV~K 230 (286)
T COG0191 155 LTDPEEALEFVERTGIDALAAAIGNVHGVYKP--GNPKLDFDRLKEIQEAV--SLPLVLHGGSGIPDEEIREAIKLGVAK 230 (286)
T ss_pred hCCHHHHHHHHhccCcceeeeeccccccCCCC--CCCCCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHhCceE
Confidence 3578889887766 599998742 665443 333 567899999988 6999988876655 5678999999999
Q ss_pred EEEcHHHHHHHhh-------cC------HHHHHHHHHHHHHHHHHHHHHhCCC
Q 018519 290 IFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 290 V~igr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 329 (354)
|-|.+-+-++... .. ..-+..-.+.+++-++.-|..+|+.
T Consensus 231 vNi~Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~ 283 (286)
T COG0191 231 VNIDTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSA 283 (286)
T ss_pred EeeCcHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999966554321 01 0122333456666666666666654
No 411
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.51 E-value=1.7 Score=41.20 Aligned_cols=78 Identities=27% Similarity=0.327 Sum_probs=52.5
Q ss_pred cccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHHH----HHHHHHHhcCCccEEEcCCCCCHH--HH----H
Q 018519 215 KGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGVRRGT--DV----F 280 (354)
Q Consensus 215 ~Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~i~vi~~GGi~~g~--dv----~ 280 (354)
-|+.++-.|+.+.++|.++|.+||+|=. -.|.+..+++. ..+|.+++ ++||++|..-..|. .+ .
T Consensus 23 pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~nvartV~ 100 (289)
T COG2513 23 PGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALNVARTVR 100 (289)
T ss_pred cCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHHHHHHHH
Confidence 3667778899999999999999886521 13566666643 33444555 89999875443333 33 3
Q ss_pred HHHHcCcCEEEEcH
Q 018519 281 KALALGASGIFIGR 294 (354)
Q Consensus 281 kalalGAd~V~igr 294 (354)
++...|+.++.|--
T Consensus 101 ~~~~aG~agi~iED 114 (289)
T COG2513 101 ELEQAGAAGIHIED 114 (289)
T ss_pred HHHHcCcceeeeee
Confidence 45558998887753
No 412
>PRK02227 hypothetical protein; Provisional
Probab=88.15 E-value=2.8 Score=38.80 Aligned_cols=76 Identities=32% Similarity=0.280 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEE-cCCCC-CHHHHH----HHHHcCcCEE
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DGGVR-RGTDVF----KALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~-~GGi~-~g~dv~----kalalGAd~V 290 (354)
+.+.|+|..+.+.|+|.|.|-|-....+ |-.....+.+|++.++++.||=+ -|++. .+..+. .+-+.|+|.|
T Consensus 7 vr~~eEA~~Al~~GaDiIDvK~P~~GaL--GA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyV 84 (238)
T PRK02227 7 VRNLEEALEALAGGADIIDVKNPKEGSL--GANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYV 84 (238)
T ss_pred cCCHHHHHHHHhcCCCEEEccCCCCCCC--CCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEE
Confidence 4689999999999999999966211112 22234568888888877678766 44443 332222 2333799999
Q ss_pred EEcH
Q 018519 291 FIGR 294 (354)
Q Consensus 291 ~igr 294 (354)
=+|-
T Consensus 85 KvGl 88 (238)
T PRK02227 85 KVGL 88 (238)
T ss_pred EEcC
Confidence 9985
No 413
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.05 E-value=25 Score=33.50 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=99.0
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe--c---CCCCCCHHHHHh-------hCC--CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ + ++.+.+.||-.+ ... -+.+.++. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 46777887543323333334666666778865433 3 334456665432 122 34555653 356667
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhh-cCCccccc-
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ-IDRSLSWK- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~- 215 (354)
..++++.|++.|++++.+.- |.. . +. +.. ....-++.+.+.. ..|.+.+.
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y-----------~-~~--~~~------------~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY-----------N-KP--NQE------------ALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC-----------C-CC--CHH------------HHHHHHHHHHHhccCCCEEEEeC
Confidence 77888999999999988742 321 0 10 000 0111134445544 34545443
Q ss_pred ----cc-CCHHHHHHHHHh--CCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 216 ----GV-LTAEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 216 ----Gi-~~~~~a~~~~~~--G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
|+ ++++...++.+. .+-+|.-+ -..+..+.++.+..+++..| .+| - -...+.++.+||+
T Consensus 136 P~~tg~~l~~~~l~~L~~~~pnv~giK~s----------s~d~~~~~~~~~~~~~~~~v-~~G-~--d~~~~~~l~~Ga~ 201 (294)
T TIGR02313 136 PGRAAQEIAPKTMARLRKDCPNIVGAKES----------NKDFEHLNHLFLEAGRDFLL-FCG-I--ELLCLPMLAIGAA 201 (294)
T ss_pred chhcCcCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHhcCCCeEE-EEc-c--hHHHHHHHHCCCC
Confidence 53 578888888742 23333321 11244455555544434433 333 1 3556678899999
Q ss_pred EEEEcHHH
Q 018519 289 GIFIGRPV 296 (354)
Q Consensus 289 ~V~igr~~ 296 (354)
+++.|..-
T Consensus 202 G~is~~~n 209 (294)
T TIGR02313 202 GSIAATAN 209 (294)
T ss_pred EEEecHHh
Confidence 99988743
No 414
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=87.97 E-value=17 Score=32.98 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCc---EEecCCC--CCCHHHHH---hhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 018519 92 ATARAASAAGTI---MTLSSWS--TSSVEEVA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG 163 (354)
Q Consensus 92 ~la~aa~~~G~~---~~~s~~~--~~~~eei~---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g 163 (354)
.=+++|.++|+. +++..-| ..++++.+ ...|....+-+|.+.+.+.+ .+.+++.+.+++++|=+-+.
T Consensus 13 eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i---~~i~~~~~ld~VQlHG~e~~-- 87 (208)
T COG0135 13 EDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEI---LEIAEELGLDAVQLHGDEDP-- 87 (208)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHH---HHHHHhcCCCEEEECCCCCH--
Confidence 556667777643 3333322 34565443 33332234556666565544 45567788999999854321
Q ss_pred chhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccccc--CCH--HHHHHHHHhCCCEEEEecC
Q 018519 164 RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGV--LTA--EDARIAVQAGAAGIIVSNH 239 (354)
Q Consensus 164 ~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi--~~~--~~a~~~~~~G~d~I~vs~~ 239 (354)
..+..+.... ..-.|+-+ ... .........-+|.+.++.+
T Consensus 88 ----------------------------------~~~~~l~~~~--~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~ 131 (208)
T COG0135 88 ----------------------------------EYIDQLKEEL--GVPVIKAISVSEEGDLELAAREEGPVDAILLDAK 131 (208)
T ss_pred ----------------------------------HHHHHHHhhc--CCceEEEEEeCCccchhhhhhccCCccEEEEcCC
Confidence 0011111111 22345521 111 2344455666899999875
Q ss_pred -----CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCc-CEEEEcH
Q 018519 240 -----GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA-SGIFIGR 294 (354)
Q Consensus 240 -----gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGA-d~V~igr 294 (354)
||+ +-.-+|..++... ...|++..||| +++.|.+|++++. .+|=+.+
T Consensus 132 ~~~~~GGt---G~~fDW~~l~~~~----~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSS 184 (208)
T COG0135 132 VPGLPGGT---GQTFDWNLLPKLR----LSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSS 184 (208)
T ss_pred CCCCCCCC---CcEECHHHhcccc----ccCCEEEECCC-CHHHHHHHHHhcCCceEEecc
Confidence 332 2244677666541 26789999999 6999999999887 8887766
No 415
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.74 E-value=26 Score=33.35 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=99.3
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe--cCC---CCCCHHHHHh-------hCC--CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~~---~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++. .+.+.||-.+ ... -+.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 36667777433323444445777777788865543 332 3456665432 222 45677763 35677
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-- 215 (354)
..++++.|+++|++++.+. .|.. . +. +.. ....-..++.+....|.+.+.
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y-----------~-~~--s~~------------~i~~~f~~v~~a~~~pvilYn~~ 139 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYL-----------I-NG--EQE------------GLYAHVEAVCESTDLGVIVYQRD 139 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------C-CC--CHH------------HHHHHHHHHHhccCCCEEEEeCC
Confidence 7788888999999999873 2321 0 10 000 001113334444334544443
Q ss_pred cc-CCHHHHHHHHHh--CCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCC-CHHHHHHHHHcCcCEEE
Q 018519 216 GV-LTAEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIF 291 (354)
Q Consensus 216 Gi-~~~~~a~~~~~~--G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~-~g~dv~kalalGAd~V~ 291 (354)
|+ ++++...++.+. .+-+|.-+ ..++..+.++.+..+++..|+ +| -. ....++.++.+||++++
T Consensus 140 g~~l~~~~~~~La~~~~nvvgiKds----------~~d~~~~~~~~~~~~~~~~v~-~G-~~~~d~~~~~~~~~Ga~G~i 207 (296)
T TIGR03249 140 NAVLNADTLERLADRCPNLVGFKDG----------IGDMEQMIEITQRLGDRLGYL-GG-MPTAEVTAPAYLPLGVTSYS 207 (296)
T ss_pred CCCCCHHHHHHHHhhCCCEEEEEeC----------CCCHHHHHHHHHHcCCCeEEE-eC-CCcchhhHHHHHhCCCCEEE
Confidence 53 688888888763 33333321 224555666665554444333 23 22 23345678889999999
Q ss_pred EcHHH
Q 018519 292 IGRPV 296 (354)
Q Consensus 292 igr~~ 296 (354)
.|..-
T Consensus 208 s~~~n 212 (296)
T TIGR03249 208 SAIFN 212 (296)
T ss_pred ecHHH
Confidence 88743
No 416
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.74 E-value=26 Score=33.38 Aligned_cols=183 Identities=20% Similarity=0.182 Sum_probs=94.7
Q ss_pred hHHHHHHHHHcCCcEEe-cCCC-----------CCCHHHHHh-------hCCCceEEEEe-ecCChHHHHHHHHHHHHcC
Q 018519 90 EYATARAASAAGTIMTL-SSWS-----------TSSVEEVAS-------TGPGIRFFQLY-VYKDRNVVAQLVRRAERAG 149 (354)
Q Consensus 90 e~~la~aa~~~G~~~~~-s~~~-----------~~~~eei~~-------~~~~~~~~QLy-~~~d~~~~~~~~~~a~~~G 149 (354)
+...|+.+++.|.-... |+.+ ..+++|+.. ...-|..+=+- ...++.-..+.++.++++|
T Consensus 27 d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 27 DAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred CHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Confidence 34788999999865443 3321 123444432 22223333331 1234666778889999999
Q ss_pred CCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCc-ccchhhHHHHHhhhcCCcccc---------ccc-C
Q 018519 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD-EANDSGLAAYVAGQIDRSLSW---------KGV-L 218 (354)
Q Consensus 150 ~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w---------~Gi-~ 218 (354)
+.++.|- -.+.++| .|+- + -+.+ .+ +.....+++.++...++.+.. .|+ -
T Consensus 107 ~agi~iE--Dq~~pk~-----cgh~-~-------gk~l----~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~ 167 (289)
T COG2513 107 AAGIHIE--DQVGPKR-----CGHL-P-------GKEL----VSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDD 167 (289)
T ss_pred cceeeee--ecccchh-----cCCC-C-------CCCc----CCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHH
Confidence 8776553 2221111 1110 0 0000 00 012233555555544454433 241 2
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEE-cCCCCCHHHHHHHHHcCcCEEEEcHHHH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRPVV 297 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~-~GGi~~g~dv~kalalGAd~V~igr~~l 297 (354)
..+-++...++|||+|.. + +..+.+.+.++.++++-.+|+-. ..|-.--.++...-.+|.+.|..|-..+
T Consensus 168 AI~Ra~AY~eAGAD~if~--~-------al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~ 238 (289)
T COG2513 168 AIERAQAYVEAGADAIFP--E-------ALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAF 238 (289)
T ss_pred HHHHHHHHHHcCCcEEcc--c-------cCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHH
Confidence 345566779999999976 3 34457788888888832233222 2222112233333449999999997665
Q ss_pred HHH
Q 018519 298 YSL 300 (354)
Q Consensus 298 ~~~ 300 (354)
.+.
T Consensus 239 raa 241 (289)
T COG2513 239 RAA 241 (289)
T ss_pred HHH
Confidence 543
No 417
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=87.67 E-value=6.4 Score=35.09 Aligned_cols=63 Identities=30% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCCCcChH-HHHHHHHHHhcCCccEEEc-CCCCCH-HHHHHHHHcCcCEEEEc
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLD-GGVRRG-TDVFKALALGASGIFIG 293 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~-GGi~~g-~dv~kalalGAd~V~ig 293 (354)
+++.+.++|+|+|++ |+-. ..... +.+..+++ . .++++++ -+..+. +++..+..+|+|.|.+.
T Consensus 68 ~~~~~~~~Gad~i~v--h~~~----~~~~~~~~i~~~~~-~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTV--LGVA----DDATIKGAVKAAKK-H--GKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEE--eccC----CHHHHHHHHHHHHH-c--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 689999999999998 5421 11122 23333333 2 5777765 355554 67777878899999885
No 418
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.61 E-value=4.8 Score=38.43 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=54.4
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCcccc-ccCCccCcCcccchhhHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN-FQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~ 201 (354)
.|.++-|- .+...+.+.++.++++|+++|.+.=-.+. .-.-|....-..+. ...++ ..++............+.
T Consensus 169 ~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~--~~~id~~~~~~~~~-~~~~~~~gg~sG~a~~p~~l~~v~ 243 (299)
T cd02940 169 IPVIAKLT--PNITDIREIARAAKEGGADGVSAINTVNS--LMGVDLDGTPPAPG-VEGKTTYGGYSGPAVKPIALRAVS 243 (299)
T ss_pred CCeEEECC--CCchhHHHHHHHHHHcCCCEEEEeccccc--ccccccccCCcccc-ccCCCCcCcccCCCcchHHHHHHH
Confidence 56777764 34556778889999999999875311110 00000000000000 00000 001100000000112234
Q ss_pred HHHhhh--cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 202 AYVAGQ--IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 202 ~~~~~~--~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
++.+.. ..|.++-.||.+.+|+.+++.+|||+|.|
T Consensus 244 ~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 244 QIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 444444 23444545899999999999999999988
No 419
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.42 E-value=3.1 Score=40.47 Aligned_cols=71 Identities=24% Similarity=0.222 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCEEEEec---CCcCCCCCCc---ChHHHHHHHHHHhcCCccEEEc--CCCCCHHHHHHHHH-cCcCEEE
Q 018519 221 EDARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQGRIPVFLD--GGVRRGTDVFKALA-LGASGIF 291 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~~i~vi~~--GGi~~g~dv~kala-lGAd~V~ 291 (354)
+.++.+.++|+|+|.+.- ++.....+.. ..++.+.++++.+ ++||++- +++....++++++. .|||+|.
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~ 195 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPVAVKLSPYFSNLANMAKRLDAAGADGLV 195 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcEEEEeCCCchhHHHHHHHHHHcCCCeEE
Confidence 456677889999999932 1111111111 1234556666555 6899876 45556678888776 8999987
Q ss_pred Ec
Q 018519 292 IG 293 (354)
Q Consensus 292 ig 293 (354)
+-
T Consensus 196 ~~ 197 (334)
T PRK07565 196 LF 197 (334)
T ss_pred EE
Confidence 74
No 420
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=87.41 E-value=5.2 Score=38.75 Aligned_cols=187 Identities=17% Similarity=0.101 Sum_probs=95.0
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEE---ecCCC------CCCH----HH----HHhhCCCceEEEEeecC
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSWS------TSSV----EE----VASTGPGIRFFQLYVYK 133 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~---~s~~~------~~~~----ee----i~~~~~~~~~~QLy~~~ 133 (354)
..|++++ +.+. .++.-..+++.++++|+.++ +|... ...+ .+ +++...-|.++-|-+
T Consensus 99 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIAS-LNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEE-eCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 4687766 3222 23333578888888886544 22100 0111 12 222233577877643
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccc
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (354)
+...+.+.++.++++|+++|.++=-.+.... |..+.-..+. .+ +.+...++ ....-+.++......|.++
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~i---d~~~~~~~~~-~g---lSG~~~~~---~al~~v~~v~~~~~ipIig 242 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPDI---DLETLEVVPN-LL---LSSPAEIR---LPLRWIAILSGRVKASLAA 242 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCCc---cccccceecC-CC---cCCccchh---HHHHHHHHHHcccCCCEEE
Confidence 3345677888899999999988543322110 1100000000 00 11100000 0011122233333344455
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEecCCcCC-CCCCcChHH-HHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH
Q 018519 214 WKGVLTAEDARIAVQAGAAGIIVSNHGARQ-LDYVPATIM-ALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 284 (354)
Q Consensus 214 w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~-~~~~~~~~~-~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala 284 (354)
-.||.+.+||.+.+.+|||+|.|. +. +..|+.-+. .+.++.+++. .-|+.+-.|+.-.++
T Consensus 243 ~GGI~s~~Da~e~l~aGA~~Vqv~----ta~~~~gp~~~~~i~~~L~~~l~-------~~g~~~i~e~~G~~~ 304 (325)
T cd04739 243 SGGVHDAEDVVKYLLAGADVVMTT----SALLRHGPDYIGTLLAGLEAWME-------EHGYESVQQLRGSMS 304 (325)
T ss_pred ECCCCCHHHHHHHHHcCCCeeEEe----hhhhhcCchHHHHHHHHHHHHHH-------HcCCCCHHHHhcccc
Confidence 558999999999999999999983 22 223443332 3344444442 357888888765444
No 421
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=87.27 E-value=6.9 Score=37.26 Aligned_cols=153 Identities=20% Similarity=0.145 Sum_probs=75.7
Q ss_pred eccceEecccccccccCChhhHHHHHHHHHcC-CcEE-ec------CC-C---CCCH---HHH----HhhCCCceEEEEe
Q 018519 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMT-LS------SW-S---TSSV---EEV----ASTGPGIRFFQLY 130 (354)
Q Consensus 70 l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G-~~~~-~s------~~-~---~~~~---eei----~~~~~~~~~~QLy 130 (354)
+..|++++=++. +++.=...|+.++++| ..++ +. .. . .... .++ ++...-|.++-|-
T Consensus 90 ~~~p~i~si~g~----~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGS----TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccC----CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 356777654332 2333347777778887 5544 21 00 0 0112 222 2232345666553
Q ss_pred ecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC-cCccccccCCccCcCcccchhhHHHHHhhhcC
Q 018519 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (354)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (354)
.+.+.+.+.+++++++|+++|.+.=-.+ |.+. +.+... |. +.....+.+.... .....-+.++.+....
T Consensus 166 --~~~~~~~~~a~~l~~~G~d~i~~~nt~~--g~~~-~~~~~~--~~~~~~~gg~sg~~~~---p~~l~~v~~i~~~~~i 235 (301)
T PRK07259 166 --PNVTDIVEIAKAAEEAGADGLSLINTLK--GMAI-DIKTRK--PILANVTGGLSGPAIK---PIALRMVYQVYQAVDI 235 (301)
T ss_pred --CCchhHHHHHHHHHHcCCCEEEEEcccc--cccc-ccccCc--eeecCCcCccCCcCcc---cccHHHHHHHHHhCCC
Confidence 2445667788899999999987631111 1110 000000 00 0000001000000 0011123333443445
Q ss_pred CcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 210 RSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 210 ~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
|.+.-.||.+++++.+++.+|+|+|.+
T Consensus 236 pvi~~GGI~~~~da~~~l~aGAd~V~i 262 (301)
T PRK07259 236 PIIGMGGISSAEDAIEFIMAGASAVQV 262 (301)
T ss_pred CEEEECCCCCHHHHHHHHHcCCCceeE
Confidence 556656899999999999999999988
No 422
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=86.88 E-value=32 Score=33.51 Aligned_cols=230 Identities=18% Similarity=0.183 Sum_probs=116.0
Q ss_pred ceEecccccccccCChhh----HHHHHHHHHcCCcEEecCCCCCCHHHHHhhC-CC-ceEEE----------Eee--cCC
Q 018519 73 PIMIAPTAMQKMAHPEGE----YATARAASAAGTIMTLSSWSTSSVEEVASTG-PG-IRFFQ----------LYV--YKD 134 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e----~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~-~~~~Q----------Ly~--~~d 134 (354)
|++||=+|.. | +|+ ..+.++|+++|+-.+= +-....+++.... +. .++.+ +|- .-+
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVK--fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVK--FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELS 74 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEE--eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCC
Confidence 6788877643 3 234 3778899999976442 1124455443211 11 11111 110 123
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCC-cCccccccCCccCcCcccchhhHHHHHhhhcCCccc
Q 018519 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (354)
Q Consensus 135 ~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (354)
.+...++.+.+++.|...+.--+|. +.-+.-..+.+|. ++...++.+ ..+-+.+.+...|.+.
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~-----~svd~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDL-----ESADFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCH-----HHHHHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEE
Confidence 4556667777788887665432222 1112222222110 111111111 1244445555666665
Q ss_pred ccccCCHHHHHHH----HHhCCC---EEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH-HHHHHHc
Q 018519 214 WKGVLTAEDARIA----VQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-VFKALAL 285 (354)
Q Consensus 214 w~Gi~~~~~a~~~----~~~G~d---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-v~kalal 285 (354)
-.|..+.++...+ .+.|.+ .+.+...-.+.-......+..++.+++.. .+||..++ =..|.. .+.|.++
T Consensus 139 StGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~Sd-Ht~G~~~~~aAval 215 (329)
T TIGR03569 139 STGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSD-HTLGIEAPIAAVAL 215 (329)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECC-CCccHHHHHHHHHc
Confidence 5577777776644 457775 45552211111111233466777777766 68998864 223333 3467789
Q ss_pred CcCEEEEcHHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHhCCC
Q 018519 286 GASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 286 GAd~V~igr~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~~ 329 (354)
||+ +|=+.|-..-...|.+.- -.-+..|.++++..-..+|..
T Consensus 216 GA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 216 GAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred CCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999 566655443333343221 134667777777777777753
No 423
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=86.86 E-value=10 Score=37.24 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCHHHHHHHHH-h----CCCEEEEec---CCcCCCCCCcChHHHHHHHHHHhc--CCcc------EEEcCCCCCH-HHHH
Q 018519 218 LTAEDARIAVQ-A----GAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ--GRIP------VFLDGGVRRG-TDVF 280 (354)
Q Consensus 218 ~~~~~a~~~~~-~----G~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~--~~i~------vi~~GGi~~g-~dv~ 280 (354)
.++++|+...+ . |+|.+-|+= ||-+....-.-.++.|.+|.+.+. -++| ++.=||=..+ +++.
T Consensus 195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~ 274 (357)
T TIGR01520 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK 274 (357)
T ss_pred CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence 58999998875 2 899998862 664321111235678999954321 1455 9988888777 7788
Q ss_pred HHHHcCcCEEEEcHHHHHH
Q 018519 281 KALALGASGIFIGRPVVYS 299 (354)
Q Consensus 281 kalalGAd~V~igr~~l~~ 299 (354)
||+.+|..-|-+++-+-++
T Consensus 275 kai~~GI~KINi~Tdl~~A 293 (357)
T TIGR01520 275 EALSYGVVKMNIDTDTQWA 293 (357)
T ss_pred HHHHCCCeEEEeCcHHHHH
Confidence 9999999999999977654
No 424
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.75 E-value=9.7 Score=37.29 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHh-----CCCEEEEec---CCcCCCCCCcC--hHHHHHHHHHH----hc----CCccEEEcCCCCCH-HH
Q 018519 218 LTAEDARIAVQA-----GAAGIIVSN---HGARQLDYVPA--TIMALEEVVKA----TQ----GRIPVFLDGGVRRG-TD 278 (354)
Q Consensus 218 ~~~~~a~~~~~~-----G~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~----~~----~~i~vi~~GGi~~g-~d 278 (354)
+++++|+...+. |+|.+-++. ||-+.. +.| .++.|.+|.+. ++ .++|++.=||=..+ +|
T Consensus 183 TdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~--~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~ 260 (345)
T cd00946 183 TQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKP--GNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEE 260 (345)
T ss_pred CCHHHHHHHHHHhccCCCceeeeeeccccccCCCC--CCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHH
Confidence 689999998875 999888864 554321 233 56788888443 31 16889998888777 56
Q ss_pred HHHHHHcCcCEEEEcHHHHHH
Q 018519 279 VFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~~ 299 (354)
+.||+.+|..-|-+++-+-++
T Consensus 261 i~kai~~GI~KiNi~T~l~~a 281 (345)
T cd00946 261 IREAISYGVVKMNIDTDTQWA 281 (345)
T ss_pred HHHHHHcCCeeEEeCcHHHHH
Confidence 668999999999999977654
No 425
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=86.70 E-value=5.1 Score=38.14 Aligned_cols=105 Identities=23% Similarity=0.176 Sum_probs=54.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
-|.++-+ ..+.+...+.+++++++|+++|.++-... +.. -+.+... |. .... ..++............+.+
T Consensus 158 ~pv~vKi--~~~~~~~~~~a~~l~~~G~d~i~v~nt~~--~~~-~~~~~~~--~~-~~~~-~gg~sg~~~~~~~l~~v~~ 228 (300)
T TIGR01037 158 VPVFAKL--SPNVTDITEIAKAAEEAGADGLTLINTLR--GMK-IDIKTGK--PI-LANK-TGGLSGPAIKPIALRMVYD 228 (300)
T ss_pred CCEEEEC--CCChhhHHHHHHHHHHcCCCEEEEEccCC--ccc-cccccCc--ee-eCCC-CccccchhhhHHHHHHHHH
Confidence 4566654 23455667888899999999998752211 100 0111000 00 0000 0000000000000112333
Q ss_pred HHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+....|.+.-.||.++++|.+++++|||+|.+
T Consensus 229 i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 229 VYKMVDIPIIGVGGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred HHhcCCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 3443444555555899999999999999999988
No 426
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.65 E-value=18 Score=34.00 Aligned_cols=68 Identities=29% Similarity=0.466 Sum_probs=42.9
Q ss_pred HHHHHHhCCCEEEEecCCcCCCCCC--cChHHHHHHHHHHhcCCccEEEc---------------CCCCCHHH--HHHHH
Q 018519 223 ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLD---------------GGVRRGTD--VFKAL 283 (354)
Q Consensus 223 a~~~~~~G~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~vi~~---------------GGi~~g~d--v~kal 283 (354)
++.....|-.-|++.=.|- .+... ..++..++.+++ . ..|||+| ||-|.--- +..|+
T Consensus 144 aeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAv 219 (264)
T PRK05198 144 VDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAV 219 (264)
T ss_pred HHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 4566677888888865553 22111 234556665554 3 4899987 45544332 23678
Q ss_pred HcCcCEEEEcH
Q 018519 284 ALGASGIFIGR 294 (354)
Q Consensus 284 alGAd~V~igr 294 (354)
++|||++++-.
T Consensus 220 A~GadGl~iEv 230 (264)
T PRK05198 220 AVGVAGLFIET 230 (264)
T ss_pred HcCCCEEEEEe
Confidence 89999999986
No 427
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=86.61 E-value=1.7 Score=38.91 Aligned_cols=74 Identities=26% Similarity=0.236 Sum_probs=49.0
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
|+.+.++++.+.+.|+|+|-+--... ....-+.+...++.+.++. .++|+.+-.+..-.++ +..+|+|+|++
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i~~~~---s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~i--a~~~~~d~Vql 79 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFIFAPK---SPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEI--AEELGLDVVQL 79 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEecCCC---CCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHH--HHhcCCCEEEE
Confidence 78899999999999999997732111 0111234555666666643 5788888754333333 23589999999
Q ss_pred cH
Q 018519 293 GR 294 (354)
Q Consensus 293 gr 294 (354)
+.
T Consensus 80 hg 81 (203)
T cd00405 80 HG 81 (203)
T ss_pred CC
Confidence 94
No 428
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=86.37 E-value=2.7 Score=39.39 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcC--CccEEEcCCCC-CHH-HHHHHHHcCcCEEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQG--RIPVFLDGGVR-RGT-DVFKALALGASGIFI 292 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~--~i~vi~~GGi~-~g~-dv~kalalGAd~V~i 292 (354)
..++|+.+.+.|+|+|.|.|.+.. ....++.+..++..+...++. ++|+=++= ++ ++. -+.-|.+.|||+|=+
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnv-L~nd~~aalaiA~A~ga~FIRv 109 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNV-LRNDPKAALAIAAATGADFIRV 109 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeee-ecCCCHHHHHHHHHhCCCEEEe
Confidence 568999999999999999997654 223455555555444443321 45542222 23 222 233456689999986
Q ss_pred c
Q 018519 293 G 293 (354)
Q Consensus 293 g 293 (354)
.
T Consensus 110 ~ 110 (254)
T PF03437_consen 110 N 110 (254)
T ss_pred c
Confidence 6
No 429
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=86.24 E-value=4.2 Score=38.30 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~v 236 (354)
||.++++++++.++ +|+++|
T Consensus 213 GIs~~e~~~~v~~~-ADGVIV 232 (265)
T COG0159 213 GISSPEQAAQVAEA-ADGVIV 232 (265)
T ss_pred CcCCHHHHHHHHHh-CCeEEE
Confidence 89999999999999 999999
No 430
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.19 E-value=16 Score=35.48 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCC-CchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhc-CCc
Q 018519 134 DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI-DRS 211 (354)
Q Consensus 134 d~~~~~~~~~~a~~~G~~ai~i~vd~p~~-g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 211 (354)
+.+.+.+.++++.+.|++.+-+.++.... .+|.+. ....+.++.+... +..
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~---------------------------d~~~v~~ir~~~g~~~~ 191 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLRE---------------------------DLARVRAVREAVGPDVD 191 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHH---------------------------HHHHHHHHHHhhCCCCE
Confidence 46667777888888999999998864310 000000 0111222222221 112
Q ss_pred cccc--ccCCHHHHHHHH----HhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc
Q 018519 212 LSWK--GVLTAEDARIAV----QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 212 ~~w~--Gi~~~~~a~~~~----~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal 285 (354)
+..| +-.+.++|.... +.+++.|- |. ..+..++.+.++++.. .+||+++..+.+..|+.+++..
T Consensus 192 l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipi~~dE~~~~~~~~~~~i~~ 261 (357)
T cd03316 192 LMVDANGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQAT--SVPIAAGENLYTRWEFRDLLEA 261 (357)
T ss_pred EEEECCCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhC--CCCEEeccccccHHHHHHHHHh
Confidence 2222 225677775443 34544432 10 1123467777888776 7999999999999999999997
Q ss_pred C-cCEEEEc
Q 018519 286 G-ASGIFIG 293 (354)
Q Consensus 286 G-Ad~V~ig 293 (354)
| +|.|.+-
T Consensus 262 ~~~d~v~~k 270 (357)
T cd03316 262 GAVDIIQPD 270 (357)
T ss_pred CCCCEEecC
Confidence 6 7888764
No 431
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.13 E-value=13 Score=34.97 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.0
Q ss_pred ccCCHHHHHHHHHhCCCEEEEe
Q 018519 216 GVLTAEDARIAVQAGAAGIIVS 237 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs 237 (354)
||.+++++..+.+. ||+++|.
T Consensus 208 GI~~~e~v~~~~~~-ADGviVG 228 (258)
T PRK13111 208 GISTPEQAAAIAAV-ADGVIVG 228 (258)
T ss_pred ccCCHHHHHHHHHh-CCEEEEc
Confidence 89999999999986 9999993
No 432
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=86.00 E-value=5.1 Score=37.68 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=21.5
Q ss_pred cCCccccc-ccCCHHHHHHHHHhCCCEEEEe
Q 018519 208 IDRSLSWK-GVLTAEDARIAVQAGAAGIIVS 237 (354)
Q Consensus 208 ~~~~~~w~-Gi~~~~~a~~~~~~G~d~I~vs 237 (354)
.+.++... ||.++++++.+. .|+|+++|.
T Consensus 197 ~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 197 TDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp TSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred cCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 34444433 899999999999 999999993
No 433
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.96 E-value=12 Score=32.02 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=47.2
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhC--C--CceEEEEeecCChHHHHHHHHHHHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG--P--GIRFFQLYVYKDRNVVAQLVRRAER 147 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~--~--~~~~~QLy~~~d~~~~~~~~~~a~~ 147 (354)
.-|++++|+..+ |..+..-++++.+..|.-...+.. ..+.+|+...+ . ....+-.+...-.....++++.+.+
T Consensus 13 prvlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~-~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 13 PRVLVAKLGLDG--HDRGAKVIARALADAGFEVINLGL-FQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred ceEEEeccCccc--cccchHHHHHHHHhCCceEEecCC-cCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 358999998654 777788999999999988666543 33456654332 1 2233322222223344555556666
Q ss_pred cCCCEEE
Q 018519 148 AGFKAIA 154 (354)
Q Consensus 148 ~G~~ai~ 154 (354)
.|.+.|.
T Consensus 90 ~G~~~i~ 96 (143)
T COG2185 90 AGVEDIL 96 (143)
T ss_pred hCCcceE
Confidence 6655544
No 434
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=85.86 E-value=11 Score=34.87 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHh---cCC-ccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGR-IPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~-i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
|.+.+.|..+.++|++.|-. .=||-.|++......+.++++.. +.. ..+++.| ++.+.++..+..+|||.+-+
T Consensus 123 iFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas-~~~~~~~~~~~l~G~d~~Ti 199 (239)
T COG0176 123 IFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVAS-ARFPNHVYIAALAGADVLTI 199 (239)
T ss_pred EecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEec-CccHHHHHHHHHhCCCcccC
Confidence 56889999999999888754 55676677766666666665543 223 4566665 99999999999999999999
Q ss_pred cHHHHHHHhhc
Q 018519 293 GRPVVYSLAAE 303 (354)
Q Consensus 293 gr~~l~~~~~~ 303 (354)
.-..+-.+...
T Consensus 200 p~~~l~~l~~~ 210 (239)
T COG0176 200 PPDLLKQLLKH 210 (239)
T ss_pred CHHHHHHHHhc
Confidence 88777766554
No 435
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=85.76 E-value=6.9 Score=36.11 Aligned_cols=76 Identities=28% Similarity=0.269 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEc-CCCC-CHHHHH----HHHHcCcCEE
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GGVR-RGTDVF----KALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~-GGi~-~g~dv~----kalalGAd~V 290 (354)
+.+.++|..+.+.|+|.|.+-|-....+ +.. ....+.+|++.++++.||=+. |.+. .+..+. .+.+.|+|.|
T Consensus 7 v~~~~EA~~a~~~gaDiID~K~P~~GaL-GA~-~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvdyv 84 (235)
T PF04476_consen 7 VRNVEEAEEALAGGADIIDLKNPAEGAL-GAL-FPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYV 84 (235)
T ss_pred CCCHHHHHHHHhCCCCEEEccCCCCCCC-CCC-CHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEE
Confidence 4689999999999999999966321112 223 345677888888767777554 4443 222222 2334799999
Q ss_pred EEcH
Q 018519 291 FIGR 294 (354)
Q Consensus 291 ~igr 294 (354)
=+|-
T Consensus 85 KvGl 88 (235)
T PF04476_consen 85 KVGL 88 (235)
T ss_pred EEec
Confidence 9984
No 436
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=85.70 E-value=4.7 Score=39.08 Aligned_cols=104 Identities=16% Similarity=0.107 Sum_probs=55.5
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
-|.++-|-+..+.+.+.+.++.++++|+++|.++-..... . ...-|.. .....++............+..
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~------~~~~~~~--~~~~gG~sG~~~~~~~l~~v~~ 272 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P------GLLRSPL--ANETGGLSGAPLKERSTEVLRE 272 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c------ccccccc--cCCCCccCChhhhHHHHHHHHH
Confidence 4678887543444567788899999999999876432210 0 0000000 0000001000000000111233
Q ss_pred HHhhh--cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQ--IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~--~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+.. ..|.+.-.||.+.+|+...+.+|||+|.|
T Consensus 273 l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~v 308 (327)
T cd04738 273 LYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQL 308 (327)
T ss_pred HHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhc
Confidence 33333 23444555899999999999999999988
No 437
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=85.69 E-value=4.2 Score=34.64 Aligned_cols=67 Identities=28% Similarity=0.291 Sum_probs=47.0
Q ss_pred cCCHHHHH-HHHHhCCCEEEEecC-CcCCCCCCcChHHHHHHHHHHhc----CCccEEEcCCCCCHHHHHHHHHcCcCEE
Q 018519 217 VLTAEDAR-IAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGI 290 (354)
Q Consensus 217 i~~~~~a~-~~~~~G~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~----~~i~vi~~GGi~~g~dv~kalalGAd~V 290 (354)
..+++++. .|++..+|.|.||+. |++ .+..+.+.++++ +++. +.-||+-..+|..+...+|.+.+
T Consensus 49 ~~tp~e~v~aA~~~dv~vIgvSsl~g~h--------~~l~~~lve~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~i 119 (143)
T COG2185 49 FQTPEEAVRAAVEEDVDVIGVSSLDGGH--------LTLVPGLVEALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRI 119 (143)
T ss_pred cCCHHHHHHHHHhcCCCEEEEEeccchH--------HHHHHHHHHHHHHhCCcceE-EeecCccCchhHHHHHHhCccee
Confidence 35666664 566999999999986 332 234455555442 2443 57899999999888888999988
Q ss_pred EE
Q 018519 291 FI 292 (354)
Q Consensus 291 ~i 292 (354)
+-
T Consensus 120 f~ 121 (143)
T COG2185 120 FG 121 (143)
T ss_pred eC
Confidence 64
No 438
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.48 E-value=35 Score=32.66 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=104.2
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHHh-------hC-C-CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~~-------~~-~-~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..++ ++ ..+.+.||-.+ .. . -|.+.+.- ..+.+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 47777887642223444445666666778865444 33 23456765432 22 2 34666654 466777
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-- 215 (354)
..++.+.|++.|++++.+. +|. +.-|. .+.....++++.++...|.+...
T Consensus 88 ai~lak~a~~~Gad~il~v--~Py-----------Y~k~~---------------~~gl~~hf~~ia~a~~lPvilYN~P 139 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPY-----------YNKPS---------------QEGLYAHFKAIAEAVDLPVILYNIP 139 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCC-----------CcCCC---------------hHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 8889999999999998874 232 11010 00111224555555544544443
Q ss_pred ---cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 ---GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 ---Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
|+ +++|...++.+ --..+-|=.. -.+++.+.++....+.+--++.+|+ -...+-++.+|++++.
T Consensus 140 ~~tg~~l~~e~i~~la~-~~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G~---d~~~~~~~~~G~~G~i 207 (299)
T COG0329 140 SRTGVDLSPETIARLAE-HPNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSGD---DELALPALLLGADGVI 207 (299)
T ss_pred cccCCCCCHHHHHHHhc-CCCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeCc---hHHHHHHHhCCCCeEE
Confidence 54 68999988887 3333333111 2246667777666533211444443 4556788889999999
Q ss_pred EcH
Q 018519 292 IGR 294 (354)
Q Consensus 292 igr 294 (354)
.+.
T Consensus 208 s~~ 210 (299)
T COG0329 208 SVT 210 (299)
T ss_pred ecc
Confidence 887
No 439
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.48 E-value=27 Score=34.13 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=60.6
Q ss_pred CCHHHHHHHH-HhC----CCEEEEec---CCcCCCCCCcChHHHHHHHHHHhcC-------CccEEEcCCCCCHHHH-HH
Q 018519 218 LTAEDARIAV-QAG----AAGIIVSN---HGARQLDYVPATIMALEEVVKATQG-------RIPVFLDGGVRRGTDV-FK 281 (354)
Q Consensus 218 ~~~~~a~~~~-~~G----~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~-------~i~vi~~GGi~~g~dv-~k 281 (354)
+++|+|.... +.| +|.+-++- ||-+....-.-.++.|.+|.+.+.. ++|++.=||=.++.|- .+
T Consensus 181 T~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ 260 (340)
T cd00453 181 TQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKD 260 (340)
T ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHH
Confidence 4699998877 589 99998864 6654210112356789999988731 6999999998888554 56
Q ss_pred HHHcCcCEEEEcHHHHHH
Q 018519 282 ALALGASGIFIGRPVVYS 299 (354)
Q Consensus 282 alalGAd~V~igr~~l~~ 299 (354)
++..|..-|-+++-+-++
T Consensus 261 ai~~Gi~KiNi~Te~~~A 278 (340)
T cd00453 261 SVSYGVVKMNIDTDTQWA 278 (340)
T ss_pred HHHcCCeEEEcccHHHHH
Confidence 888999999999976543
No 440
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=85.37 E-value=3.8 Score=39.82 Aligned_cols=74 Identities=30% Similarity=0.333 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhCCCEEEEec-CCcC--C----------CCCCcC-------hHHHHHHHHHHhcCCccEEEc--------
Q 018519 219 TAEDARIAVQAGAAGIIVSN-HGAR--Q----------LDYVPA-------TIMALEEVVKATQGRIPVFLD-------- 270 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~-~gg~--~----------~~~~~~-------~~~~l~~i~~~~~~~i~vi~~-------- 270 (354)
..+.|+++.++|+|+|-+.. ||.- | -.+|-+ ..+.+..|+++++.++||.+.
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 34678899999999999953 3320 1 012222 245677777777667788765
Q ss_pred CCCCCHH---HHHHHHH-cCcCEEEEc
Q 018519 271 GGVRRGT---DVFKALA-LGASGIFIG 293 (354)
Q Consensus 271 GGi~~g~---dv~kala-lGAd~V~ig 293 (354)
+|. +.+ .+++.|. .|.|.+-+.
T Consensus 236 ~g~-~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 236 GGW-DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 554 344 4555665 799999874
No 441
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=85.30 E-value=14 Score=36.73 Aligned_cols=192 Identities=12% Similarity=0.005 Sum_probs=93.3
Q ss_pred ccceEecccccccccCChhhHHHHHHHHHcCCcEEe---cCCCC-----------CCHH---HH----HhhCCCceEEEE
Q 018519 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL---SSWST-----------SSVE---EV----ASTGPGIRFFQL 129 (354)
Q Consensus 71 ~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~---s~~~~-----------~~~e---ei----~~~~~~~~~~QL 129 (354)
..|++.|=|+..+ ++.=..+++.+.+.|+.+.- |.-.. ...| ++ ++...-|.|+-|
T Consensus 113 ~~pvIaSi~~~~s---~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEYN---KDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCCC---HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 3588887554332 23334788888888865432 21000 1222 23 222235788887
Q ss_pred eecCChHHHHHHHHHHHHcCCCEEEEecCCCC-CCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhc
Q 018519 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPR-LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (354)
Q Consensus 130 y~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~-~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (354)
-+ +...+.+.++.++++|+++|.+.=-.+. .+. |+.+.-..|.-.+.....++.......-....+.++.+...
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~I---D~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~ 264 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAINTIMSVMGI---NLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMK 264 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEecccCccccc---ccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHh
Confidence 54 4445788889999999999877321111 110 11100000100000001111100000000011112222221
Q ss_pred ------CCcccccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHH-HHHHHHHHhcCCccEEEcCCCCCHHHHH
Q 018519 209 ------DRSLSWKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLDGGVRRGTDVF 280 (354)
Q Consensus 209 ------~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~i~vi~~GGi~~g~dv~ 280 (354)
.|.++-.||.+.+||...+.+||+.|.|... -+..|+.-+. .+.++.+++.. =|+.+-.|+.
T Consensus 265 ~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta---~~~~Gp~vi~~i~~~L~~~m~~-------~G~~si~e~~ 333 (385)
T PLN02495 265 SEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTG---VMMHGYPLVKNLCAELQDFMKK-------HNFSSIEDFR 333 (385)
T ss_pred hhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeee---eeecCcHHHHHHHHHHHHHHHH-------cCCCCHHHHh
Confidence 2344555999999999999999999998321 1223444332 34555555421 3566666664
No 442
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.24 E-value=5.9 Score=36.98 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEec-CCcCCCCCCcChHHHHHHHHHHhc-CCc-cEEEcCCCCCHHHHHHHHHcCcCE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GRI-PVFLDGGVRRGTDVFKALALGASG 289 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~-~~i-~vi~~GGi~~g~dv~kalalGAd~ 289 (354)
.|....++..++.+..+|.|+|+|+. ||. -+++.+..+..+.. ..+ |++=- --.+...+.++|.+||++
T Consensus 16 ~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~-------~~~~~~~~~~~a~~~~g~~~~VRv-p~~~~~~i~r~LD~Ga~g 87 (249)
T TIGR03239 16 CWSALGNPITTEVLGLAGFDWLLLDGEHAP-------NDVLTFIPQLMALKGSASAPVVRP-PWNEPVIIKRLLDIGFYN 87 (249)
T ss_pred EEEcCCCcHHHHHHHhcCCCEEEEecccCC-------CCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhcCCCCE
Confidence 66666789999999999999999976 553 33444444444432 133 33333 235788899999999999
Q ss_pred EEEc
Q 018519 290 IFIG 293 (354)
Q Consensus 290 V~ig 293 (354)
|++=
T Consensus 88 IivP 91 (249)
T TIGR03239 88 FLIP 91 (249)
T ss_pred EEec
Confidence 9874
No 443
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=85.24 E-value=3.7 Score=39.47 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=52.8
Q ss_pred hCCCceEEEEeecCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccch
Q 018519 120 TGPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (354)
Q Consensus 120 ~~~~~~~~QLy~~~d--~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (354)
..+.|..+-+-...+ .+.+.+.+++++++|+++|.||-=++.- .+.-| ..-
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~~~~~------------------a~w 172 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------RYKGP------------------ADW 172 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------CCTS---------------------H
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------cCCcc------------------cch
Confidence 344466666554444 6778999999999999999998654431 11100 011
Q ss_pred hhHHHHHhhhcCCcccccccCCHHHHHHHHHh-CCCEEEE
Q 018519 198 SGLAAYVAGQIDRSLSWKGVLTAEDARIAVQA-GAAGIIV 236 (354)
Q Consensus 198 ~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~-G~d~I~v 236 (354)
..++++++....|.+.=.+|.+.+|+++..+. |+|+|.+
T Consensus 173 ~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 173 EAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred HHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 23455555555455544479999999998776 9999988
No 444
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=85.14 E-value=13 Score=35.65 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHH-HHHHHHHcC-cCEEEEcHHHHH
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALG-ASGIFIGRPVVY 298 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~-dv~kalalG-Ad~V~igr~~l~ 298 (354)
+-++...++|||+|.| +|+ ..+.+.+.++.+.+...+||+...| .++. .....-.+| ...|..|...++
T Consensus 170 ~Ra~aY~eAGAD~ifv--~~~------~~~~~ei~~~~~~~~~p~pv~~~~~-~~p~~~~~~l~~lg~~~~v~~g~~~~~ 240 (290)
T TIGR02321 170 RRGQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPT-AYPQLTEADIAALSKVGIVIYGNHAIR 240 (290)
T ss_pred HHHHHHHHcCCCEEEe--cCC------CCCHHHHHHHHHhcCCCCCeEEecC-CCCCCCHHHHHHhcCCcEEEEChHHHH
Confidence 3345678999999999 432 2346777788887755678865433 1222 222344587 788888876655
Q ss_pred H
Q 018519 299 S 299 (354)
Q Consensus 299 ~ 299 (354)
+
T Consensus 241 a 241 (290)
T TIGR02321 241 A 241 (290)
T ss_pred H
Confidence 4
No 445
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.10 E-value=5.1 Score=33.60 Aligned_cols=66 Identities=29% Similarity=0.291 Sum_probs=43.5
Q ss_pred CCHH-HHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc----CCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 218 LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 218 ~~~~-~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
.++| .++.+.+.++|.|.+|+.-+ .+.+.++++.+.++ ++++|++ ||....+|..+..++|.|.+.
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~-------~~~~~~~~~~~~L~~~g~~~i~viv-GG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAG-------GHLTLVPALRKELDKLGRPDILVVV-GGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchh-------hhHHHHHHHHHHHHhcCCCCCEEEE-eCCCChHhHHHHHHCCCCEEE
Confidence 4554 45788999999999976532 12334444444432 2455555 766667888888889998775
No 446
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=85.07 E-value=32 Score=34.38 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=55.9
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCC-----C--------CcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLD-----Y--------VPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~-----~--------~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv 279 (354)
.|.+.+.|..|.++|++.|.. .-||-.+ . .-|.+..+.+|.+..+ .+..|++.+ +|+..++
T Consensus 161 lvFS~~QA~aaaeAGa~~ISP--fVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~AS-fRn~~~v 237 (391)
T PRK12309 161 LLFGFHQAIACAEAGVTLISP--FVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGAS-FRNIGEI 237 (391)
T ss_pred eecCHHHHHHHHHcCCCEEEe--ecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecc-cCCHHHH
Confidence 468999999999999988765 3343222 1 1235566667766553 245555554 9999999
Q ss_pred HHHHHcCcCEEEEcHHHHHHH
Q 018519 280 FKALALGASGIFIGRPVVYSL 300 (354)
Q Consensus 280 ~kalalGAd~V~igr~~l~~~ 300 (354)
.+ .+|||.+-+.-.++-.+
T Consensus 238 ~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 238 IE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HH--HHCCCeeeCCHHHHHHH
Confidence 87 48999999887776554
No 447
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=85.00 E-value=4.4 Score=37.97 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=51.0
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEec-CCcCCCCCCcChHHHHHHHHHHhc-CCc-cEEEcCCCCCHHHHHHHHHcCcCE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ-GRI-PVFLDGGVRRGTDVFKALALGASG 289 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~-~~i-~vi~~GGi~~g~dv~kalalGAd~ 289 (354)
.|..+.++..++.+..+|.|+|+++. || +-+++.+..+..++. ..+ |++=-- -.+...+.++|.+||++
T Consensus 23 ~~~~~~sp~~~e~~a~~G~D~v~iD~EHg-------~~~~~~~~~~i~a~~~~g~~~lVRvp-~~~~~~i~r~LD~Ga~g 94 (256)
T PRK10558 23 CWSALANPITTEVLGLAGFDWLVLDGEHA-------PNDVSTFIPQLMALKGSASAPVVRVP-TNEPVIIKRLLDIGFYN 94 (256)
T ss_pred EEEcCCCcHHHHHHHhcCCCEEEEccccC-------CCCHHHHHHHHHHHhhcCCCcEEECC-CCCHHHHHHHhCCCCCe
Confidence 66667799999999999999999976 55 334444544444432 123 333332 34678899999999999
Q ss_pred EEEcH
Q 018519 290 IFIGR 294 (354)
Q Consensus 290 V~igr 294 (354)
|++=.
T Consensus 95 iivP~ 99 (256)
T PRK10558 95 FLIPF 99 (256)
T ss_pred eeecC
Confidence 98743
No 448
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.99 E-value=3.9 Score=36.26 Aligned_cols=64 Identities=30% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhc-CCccEEEc-CCCCCHHHHHHHHHcCcCEEEEc
Q 018519 221 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ-GRIPVFLD-GGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~vi~~-GGi~~g~dv~kalalGAd~V~ig 293 (354)
..++.+.++|+|+|++ |+-. .+ +.+.++.+.++ ..++++++ =+..|+.++.+++..|+|.|.++
T Consensus 68 ~~~~~~~~aGad~i~~--h~~~----~~---~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 68 LEAEMAFKAGADIVTV--LGAA----PL---STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHhcCCCEEEE--EeeC----CH---HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 4578899999999999 4321 11 22222333222 25777775 77999999999888999999885
No 449
>PTZ00411 transaldolase-like protein; Provisional
Probab=84.76 E-value=5.1 Score=39.07 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCC-------------CcChHHHHHHHHHHhc--CCccEEEcCCCCCHHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVF 280 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~~--~~i~vi~~GGi~~g~dv~ 280 (354)
.+.+...|..|.++|++.|.. .=||-.|| +.+.+..+.+|.+..+ +--..|....+|+..++.
T Consensus 167 lvFS~~QA~aaaeAGa~~ISP--fVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~ 244 (333)
T PTZ00411 167 LLFSFAQAVACAQAGVTLISP--FVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEIL 244 (333)
T ss_pred EecCHHHHHHHHHcCCCEEEe--ecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHH
Confidence 468999999999999988865 33332222 4456667777776553 223455556699999998
Q ss_pred HHHHcCcCEEEEcHHHHHHHh
Q 018519 281 KALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 281 kalalGAd~V~igr~~l~~~~ 301 (354)
+ .+|||.+-+.-.++-.+.
T Consensus 245 ~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 245 E--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred H--HHCCCEEeCCHHHHHHHH
Confidence 7 489999999877776654
No 450
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=84.76 E-value=3.5 Score=35.48 Aligned_cols=75 Identities=27% Similarity=0.302 Sum_probs=50.5
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHH-----HHHHcCcCEEEEc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF-----KALALGASGIFIG 293 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~-----kalalGAd~V~ig 293 (354)
..++++.+.+.|++.|.+.................+..+.+.. ++|+++...+.+..+.. .+..+|+|+|.+.
T Consensus 14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~ 91 (200)
T cd04722 14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIH 91 (200)
T ss_pred HHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEe
Confidence 4688889999999999986543321111111112344555544 78999999888877765 5667999999998
Q ss_pred HH
Q 018519 294 RP 295 (354)
Q Consensus 294 r~ 295 (354)
-.
T Consensus 92 ~~ 93 (200)
T cd04722 92 GA 93 (200)
T ss_pred cc
Confidence 53
No 451
>PRK15063 isocitrate lyase; Provisional
Probab=84.72 E-value=2.4 Score=42.55 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC---------CCCCCcChHHHH----HHHHHHhc--------C------C--cc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR---------QLDYVPATIMAL----EEVVKATQ--------G------R--IP 266 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~---------~~~~~~~~~~~l----~~i~~~~~--------~------~--i~ 266 (354)
|+.++-.|.++.++|.++|.+||.+=. ..|.+.-++..+ .+|.+++. . + +|
T Consensus 69 Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~~~d~~~P 148 (428)
T PRK15063 69 GALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKGYIDYFAP 148 (428)
T ss_pred CCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccccccCCCC
Confidence 788999999999999999999985311 124444444333 33333331 0 2 89
Q ss_pred EEEcC--CCCCHHHH---HHHH-HcCcCEEEEcH
Q 018519 267 VFLDG--GVRRGTDV---FKAL-ALGASGIFIGR 294 (354)
Q Consensus 267 vi~~G--Gi~~g~dv---~kal-alGAd~V~igr 294 (354)
||+|+ |......+ +|.+ ..||.+|.|--
T Consensus 149 IiADaDtGfGg~~nv~~~vk~~ieAGaAGIhiED 182 (428)
T PRK15063 149 IVADAEAGFGGVLNAFELMKAMIEAGAAGVHFED 182 (428)
T ss_pred eEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 99996 44444444 5555 48999998854
No 452
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=84.72 E-value=10 Score=36.53 Aligned_cols=88 Identities=7% Similarity=0.041 Sum_probs=55.1
Q ss_pred CceEEEEeec-CChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHH
Q 018519 123 GIRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 123 ~~~~~QLy~~-~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (354)
-|.++-+-.. .+.+...+.++.++++|+++|.||-.+.. +++.-|. . ....+.
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y~g~~----~-------------~~~~i~ 187 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGYRAEH----I-------------NWQAIG 187 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCCCCCc----c-------------cHHHHH
Confidence 3566665332 23344678889999999999998743321 1121010 0 011244
Q ss_pred HHHhhhcCCcccccccCCHHHHHHHH-HhCCCEEEE
Q 018519 202 AYVAGQIDRSLSWKGVLTAEDARIAV-QAGAAGIIV 236 (354)
Q Consensus 202 ~~~~~~~~~~~~w~Gi~~~~~a~~~~-~~G~d~I~v 236 (354)
++.+....|++.-.+|.++++|..++ +.|+|+|-+
T Consensus 188 ~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmi 223 (312)
T PRK10550 188 EIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMI 223 (312)
T ss_pred HHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEE
Confidence 55555556666655799999999977 589999998
No 453
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=84.68 E-value=32 Score=33.45 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=30.6
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcC
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 271 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~G 271 (354)
..++|+.++++||++|++- +.|.- ...+|.+.+ ++|+|.-|
T Consensus 184 li~dA~ale~AGAf~ivLE---------~Vp~~-la~~It~~l--~IPtIGIG 224 (332)
T PLN02424 184 VVETALALQEAGCFAVVLE---------CVPAP-VAAAITSAL--QIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHcCCcEEEEc---------CCcHH-HHHHHHHhC--CCCEEeec
Confidence 4578999999999999982 23333 667788877 89998643
No 454
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=84.24 E-value=37 Score=31.96 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=95.6
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCcEEe--cCC---CCCCHHHHH-------hhCC--CceEEEEeecCChHHH
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~~---~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 138 (354)
|.++.|+.-..-.+.++-..+.+-..+.|+...+ ++. .+.+.+|-. +..+ -+.++++- ..+.+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 5556666432222333334677777788875443 322 234555432 2222 45777764 4578888
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc---
Q 018519 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK--- 215 (354)
Q Consensus 139 ~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--- 215 (354)
.++++.|+++|++++.+.- |.. . + .+.. ....-+.++.+....|.+.+.
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~-----------~-~--~s~~------------~l~~y~~~ia~~~~~pi~iYn~P~ 137 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYY-----------F-K--PSQE------------ELIDYFRAIADATDLPIIIYNNPA 137 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STS-----------S-S--CCHH------------HHHHHHHHHHHHSSSEEEEEEBHH
T ss_pred HHHHHHHhhcCceEEEEec--ccc-----------c-c--chhh------------HHHHHHHHHHhhcCCCEEEEECCC
Confidence 8999999999999998853 321 0 0 0000 000112333333333433333
Q ss_pred --cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEE
Q 018519 216 --GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 292 (354)
Q Consensus 216 --Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~i 292 (354)
|. ++++...++.+ -...+-+= + +..++..+.++.+...+++. +.+| ...-++.++.+|+++++.
T Consensus 138 ~tg~~ls~~~l~~L~~-~~nv~giK-------~-s~~~~~~~~~~~~~~~~~~~-v~~G---~d~~~~~~l~~G~~G~is 204 (289)
T PF00701_consen 138 RTGNDLSPETLARLAK-IPNVVGIK-------D-SSGDLERLIQLLRAVGPDFS-VFCG---DDELLLPALAAGADGFIS 204 (289)
T ss_dssp HHSSTSHHHHHHHHHT-STTEEEEE-------E-SSSBHHHHHHHHHHSSTTSE-EEES---SGGGHHHHHHTTSSEEEE
T ss_pred ccccCCCHHHHHHHhc-CCcEEEEE-------c-CchhHHHHHHHhhhcccCee-eecc---ccccccccccccCCEEEE
Confidence 43 67888877777 22222221 1 11223445566666555554 4445 455678999999999998
Q ss_pred cHHH
Q 018519 293 GRPV 296 (354)
Q Consensus 293 gr~~ 296 (354)
+..-
T Consensus 205 ~~~n 208 (289)
T PF00701_consen 205 GLAN 208 (289)
T ss_dssp SGGG
T ss_pred cccc
Confidence 8853
No 455
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=84.08 E-value=5.2 Score=40.10 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=54.5
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccc-cccCCccCcCcccchhhHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK-NFQGLDLGKMDEANDSGLA 201 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (354)
-|.++-|-+ +...+.++++.++++|+++|.+. ++-. +.-.-|+.+.-..|. +..+ ...++.......-...-+.
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~-~~~~~~~gg~SG~a~~p~~l~~v~ 243 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI-VNGKSSHGGYCGPAVKPIALNMVA 243 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce-ecCCCCcccccchhhhHHHHHHHH
Confidence 578887743 34447788899999999998853 2111 000000000000010 0000 0001100000000011233
Q ss_pred HHHhhh---cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 202 AYVAGQ---IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 202 ~~~~~~---~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
++.+.. ..|.++-.||.+.+||...+.+|||+|.|
T Consensus 244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi 281 (420)
T PRK08318 244 EIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQV 281 (420)
T ss_pred HHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhee
Confidence 333332 23455656899999999999999999998
No 456
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=83.98 E-value=3.3 Score=41.11 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=47.8
Q ss_pred eeEcCeeeccceEecccccccccCChh-----hHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCC--h
Q 018519 63 TTVLGFKISMPIMIAPTAMQKMAHPEG-----EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 135 (354)
Q Consensus 63 t~l~g~~l~~Pi~iAPm~~~~l~~~~~-----e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d--~ 135 (354)
.+|.++++++-|+.|||+-..+..++| ..+.-+.-++.|+.+++.+....+... .....+...|+-...+ .
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEI--EQFPMPSLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcc--cccCCCCccccccCCHHHh
Confidence 578889999999999996423223332 235555555568888876543222110 0000011112211111 2
Q ss_pred HHHHHHHHHHHHcCCCEE
Q 018519 136 NVVAQLVRRAERAGFKAI 153 (354)
Q Consensus 136 ~~~~~~~~~a~~~G~~ai 153 (354)
+..+++++.+.+.|++++
T Consensus 83 ~~~k~l~davh~~G~~i~ 100 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF 100 (382)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 345667777778888754
No 457
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=83.94 E-value=39 Score=31.92 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=97.4
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe-----cCCCCCCHHHHHh-------hCC--CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-..-.+.++-..+.+-+.+.|+..++ |++.+.+.+|-.+ ..+ .+.++++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 36677787443333444445777777778875544 3333456665432 222 356666543 46777
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-- 215 (354)
..++++.|+++|++++.+.- |.. . +. +.. ....-+.++.+....|.+.+.
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~-----------~-~~--~~~------------~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYY-----------N-KP--TQE------------GLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcC-----------C-CC--CHH------------HHHHHHHHHHhcCCCCEEEEECc
Confidence 88889999999999998742 321 0 00 000 001112333433333433332
Q ss_pred ---cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 ---GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 ---Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
|+ ++++...++.+.+ ..+-+ .+. ..+...+.++.+..+++..|+ +| ....++..+.+|+++++
T Consensus 137 ~~~g~~l~~~~~~~L~~~p-~v~gi-------K~s-~~d~~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~i 203 (292)
T PRK03170 137 GRTGVDILPETVARLAEHP-NIVGI-------KEA-TGDLERVSELIELVPDDFAVY-SG---DDALALPFLALGGVGVI 203 (292)
T ss_pred cccCCCCCHHHHHHHHcCC-CEEEE-------EEC-CCCHHHHHHHHHhCCCCeEEE-EC---ChHhHHHHHHcCCCEEE
Confidence 43 6788888775432 22212 111 112344555554443344333 33 23346778899999999
Q ss_pred EcHHHH
Q 018519 292 IGRPVV 297 (354)
Q Consensus 292 igr~~l 297 (354)
.|...+
T Consensus 204 s~~~n~ 209 (292)
T PRK03170 204 SVAANV 209 (292)
T ss_pred EhHHhh
Confidence 886543
No 458
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=83.91 E-value=2.1 Score=42.20 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 249 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 249 ~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+|+.|.++++.. +.|||+-| |.+++|+.+++.+|+|+|.++-
T Consensus 223 ~~w~~i~~ir~~~--~~pviiKg-V~~~eda~~a~~~G~d~I~VSn 265 (361)
T cd04736 223 FNWQDLRWLRDLW--PHKLLVKG-IVTAEDAKRCIELGADGVILSN 265 (361)
T ss_pred CCHHHHHHHHHhC--CCCEEEec-CCCHHHHHHHHHCCcCEEEECC
Confidence 3578888888877 67888885 9999999999999999998763
No 459
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=83.89 E-value=7.7 Score=36.60 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=49.4
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEec-CCcCCCCCCcChHHHHHHHHHHhc--CCccEEEcCCCCCHHHHHHHHHcCcCE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASG 289 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~--~~i~vi~~GGi~~g~dv~kalalGAd~ 289 (354)
.|..+.++..++.+..+|.|+|+|+. || +-+++.+..+..++. +-.|++=-- -.+...+.++|.+||++
T Consensus 22 ~~~~~~sp~~~E~~a~~GfD~v~iD~EHg-------~~~~~~l~~~i~a~~~~g~~~lVRvp-~~~~~~i~r~LD~GA~G 93 (267)
T PRK10128 22 LWLSSTTSYMAEIAATSGYDWLLIDGEHA-------PNTIQDLYHQLQAIAPYASQPVIRPV-EGSKPLIKQVLDIGAQT 93 (267)
T ss_pred EEecCCCcHHHHHHHHcCCCEEEEccccC-------CCCHHHHHHHHHHHHhcCCCeEEECC-CCCHHHHHHHhCCCCCe
Confidence 57667789999999999999999976 54 333343333333321 223333322 23578888999999999
Q ss_pred EEEcH
Q 018519 290 IFIGR 294 (354)
Q Consensus 290 V~igr 294 (354)
|++=.
T Consensus 94 IivP~ 98 (267)
T PRK10128 94 LLIPM 98 (267)
T ss_pred eEecC
Confidence 98854
No 460
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.81 E-value=5.1 Score=39.18 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=56.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
-|.++-|-+..+.+.+.+.++.++++|+++|.++=..+.. . ++.. . +.......+.+.... ......+.+
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~--~--~~~~-~--~~~~~~gg~SG~~~~---~~~l~~v~~ 281 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR--D--GLKG-L--PNADEAGGLSGRPLF---ERSTEVIRR 281 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc--c--cccc-c--ccCCCCCCcccHHHH---HHHHHHHHH
Confidence 4678777544444567788899999999999886433210 0 0000 0 000000000000000 000111233
Q ss_pred HHhhh--cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQ--IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~--~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+.. ..|.+.-.||.+.+|+...+.+|||+|.|
T Consensus 282 l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 282 LYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 33333 23445555899999999999999999987
No 461
>TIGR03586 PseI pseudaminic acid synthase.
Probab=83.77 E-value=21 Score=34.74 Aligned_cols=67 Identities=9% Similarity=0.221 Sum_probs=49.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHH----cCcCEEE
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA----LGASGIF 291 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kala----lGAd~V~ 291 (354)
-+++.+.+..+.+.|++++.|.. .-...+..|..+.+. ..|||.+-|..+-.++..|+. .|..-|.
T Consensus 96 tpfd~~svd~l~~~~v~~~KI~S-------~~~~n~~LL~~va~~---gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~ 165 (327)
T TIGR03586 96 SPFDETAVDFLESLDVPAYKIAS-------FEITDLPLIRYVAKT---GKPIIMSTGIATLEEIQEAVEACREAGCKDLV 165 (327)
T ss_pred ccCCHHHHHHHHHcCCCEEEECC-------ccccCHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEE
Confidence 35788889999999999999822 123346667666653 789999999999999988775 4664444
Q ss_pred E
Q 018519 292 I 292 (354)
Q Consensus 292 i 292 (354)
+
T Consensus 166 L 166 (327)
T TIGR03586 166 L 166 (327)
T ss_pred E
Confidence 4
No 462
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=83.71 E-value=0.37 Score=44.09 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC--CCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEc
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 293 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ig 293 (354)
||.+.+++..+.+.|++-+++ |-+. |..+...+...+..+++.++.+.++++.||||-.. ..+.-..+.|.+.+|
T Consensus 115 gV~t~~~~~~l~~~g~~~~v~--h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~~~-~~~~dq~rvd~iVVG 191 (218)
T PRK13305 115 GNWTLDDARDWHRIGVRQAIY--HRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPAD-LPLFKDIRVKAFIAG 191 (218)
T ss_pred EecCcchHHHHHHcCCHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCccc-cccccccCCCEEEEC
Confidence 444555656666677664443 3111 11112233344667777665567799999999432 223345678999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 018519 294 RPVVYSLAAEGEKGVRRVLEMLREEFEL 321 (354)
Q Consensus 294 r~~l~~~~~~G~~gv~~~l~~l~~el~~ 321 (354)
||+..+ +......+.+.++++.
T Consensus 192 R~It~A------~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 192 RALAGA------ANPAQVAADFHAQIDA 213 (218)
T ss_pred CcccCC------CCHHHHHHHHHHHHHH
Confidence 998642 3344566777777755
No 463
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=83.36 E-value=3.5 Score=40.20 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHH-hcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~-~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
..+.|+...+.||++|.|-.-.. +=..+++.|.+++++ + ++||+.-==|-++-++.+|-++|||+|.+=-
T Consensus 141 p~~iA~~Ye~~GA~aISVLTd~~----~F~Gs~e~L~~vr~~~v--~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVLTDEK----YFQGSFENLEAIRNAGV--KCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHHHHhCCCcEEEEecCcC----cCCCCHHHHHHHHHcCC--CCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 45778888999999999844211 112236778888886 6 7899998889999999999999999996543
No 464
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=83.10 E-value=2.4 Score=42.17 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 249 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 249 ~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
.+|+.|.++++.. ++|||+- ||.+.+|+.+++.+|+|+|.+..
T Consensus 240 ~tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 240 LTWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 4688888888876 7898887 69999999999999999999863
No 465
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=83.02 E-value=4 Score=38.24 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=49.9
Q ss_pred ccccccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHHH-HHHHHHHhcC-Ccc-EEEcCCCCC----HHH--
Q 018519 212 LSWKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-LEEVVKATQG-RIP-VFLDGGVRR----GTD-- 278 (354)
Q Consensus 212 ~~w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~~-l~~i~~~~~~-~i~-vi~~GGi~~----g~d-- 278 (354)
+..-++.+.-.|+.+.++|+|+|.++...+. ..|.+.-+++. +..++...+. +.| |++|-+..+ .++
T Consensus 14 l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av 93 (254)
T cd06557 14 IVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQAL 93 (254)
T ss_pred EEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHH
Confidence 3333455667899999999999975322111 23455556543 3333332222 678 888776443 333
Q ss_pred --HHHHHH-cCcCEEEE
Q 018519 279 --VFKALA-LGASGIFI 292 (354)
Q Consensus 279 --v~kala-lGAd~V~i 292 (354)
+.+.+. .||++|.|
T Consensus 94 ~~a~r~~~~aGa~aVki 110 (254)
T cd06557 94 RNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 567787 99999999
No 466
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=82.82 E-value=49 Score=32.19 Aligned_cols=248 Identities=18% Similarity=0.149 Sum_probs=0.0
Q ss_pred ceeEcCeeecc---ceEecccccccccCChhhHHHHHHHHHcCCcEEecCCCCCCHHHHHhhCC-CceE----------E
Q 018519 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRF----------F 127 (354)
Q Consensus 62 st~l~g~~l~~---Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~----------~ 127 (354)
..+|+|+++.. |++||=+|..--..-+--.++..+|+++|+. ++=-+.....+.+..... .++- +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGAD-avKfQt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGAD-AVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcc-eeeeecccccccccccccCCccccccccccccHH
Q ss_pred EEee--cCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHh
Q 018519 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (354)
Q Consensus 128 QLy~--~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (354)
|+|- .-+.+...++.+.|++-| ++-+.+|- ..+..++-+.+. |.-+....+.- ....+-+.+.
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~G----i~~~SSPf-d~~svd~l~~~~-~~ayKIaS~E~---------~~~plik~iA 144 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRG----IIFFSSPF-DLTAVDLLESLN-PPAYKIASGEI---------NDLPLIKYIA 144 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----eEEEecCC-CHHHHHHHHhcC-CCeEEecCccc---------cChHHHHHHH
Q ss_pred hhcCCcccccccCCHHHHH----HHHHhCCC-EEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHH
Q 018519 206 GQIDRSLSWKGVLTAEDAR----IAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 280 (354)
Q Consensus 206 ~~~~~~~~w~Gi~~~~~a~----~~~~~G~d-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~ 280 (354)
+...|.+.=.|+.+.++.+ .+.+.|.. .+.++....+.-......+..++.+++.. .++|=.|.==..-.-.+
T Consensus 145 ~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F--n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 145 KKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF--NAIVGLSDHTLGILAPL 222 (347)
T ss_pred hcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--CCccccccCccchhHHH
Q ss_pred HHHHcCcCEEEEcHHHHHHHhhcCHHHH----HHHHHHHHHHHHHHHHHhCCC
Q 018519 281 KALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 329 (354)
Q Consensus 281 kalalGAd~V~igr~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~~ 329 (354)
-|++||| ++|-+.|.....-.|++.. -+-++.|.+.++..-..+|..
T Consensus 223 ~AvALGA--~viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~~ 273 (347)
T COG2089 223 AAVALGA--SVIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGDG 273 (347)
T ss_pred HHHHhcc--cceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCCC
No 467
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=82.79 E-value=8.6 Score=37.47 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCEEEEecC----CcCCCCC---CcChHHHHHHHHHHhcC-CccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 220 AEDARIAVQAGAAGIIVSNH----GARQLDY---VPATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 220 ~~~a~~~~~~G~d~I~vs~~----gg~~~~~---~~~~~~~l~~i~~~~~~-~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
.+.+..+.++|+|.|-|. | ||.+++. ..++++.+.++++.++. ++-+++.-|+.+..|+-+|..+|+|.|-
T Consensus 27 ~~ia~~Ld~aGV~~IEvg-~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~ir 105 (333)
T TIGR03217 27 RAIAAALDEAGVDAIEVT-HGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVR 105 (333)
T ss_pred HHHHHHHHHcCCCEEEEe-cCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEE
Confidence 456778899999999995 3 2334433 34678888888877643 4556777789999999999999999999
Q ss_pred EcH
Q 018519 292 IGR 294 (354)
Q Consensus 292 igr 294 (354)
+..
T Consensus 106 i~~ 108 (333)
T TIGR03217 106 VAT 108 (333)
T ss_pred EEe
Confidence 886
No 468
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=82.51 E-value=2.5 Score=40.49 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=50.2
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC-----CCCCCcChHH----HHHHHHHHhcCCccEEEcC--CCCCHHHH---H-
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTDV---F- 280 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~i~vi~~G--Gi~~g~dv---~- 280 (354)
|+.+.-.|+.+.++|.+++.+|+.+.. ..|.+.-+++ .+.+|..++ ++||++|. |..+..++ +
T Consensus 22 ~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~~v~r~V~ 99 (294)
T TIGR02319 22 SAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAMSVWRATR 99 (294)
T ss_pred cCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHHHHHHHH
Confidence 555667899999999999999775321 2344544443 233444444 79999875 55555565 3
Q ss_pred HHHHcCcCEEEEc
Q 018519 281 KALALGASGIFIG 293 (354)
Q Consensus 281 kalalGAd~V~ig 293 (354)
+....||.++.|-
T Consensus 100 ~~~~aGaagi~IE 112 (294)
T TIGR02319 100 EFERVGIVGYHLE 112 (294)
T ss_pred HHHHcCCeEEEEE
Confidence 4445999999884
No 469
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.45 E-value=8.3 Score=35.04 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 222 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 222 ~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
.++.+.+.|.+.|-|.- ..+...+.|+++++..+ --+|+.|=|-+++++..+.+.||+++.
T Consensus 30 ~a~Ali~gGi~~IEITl-------~sp~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~fiV 90 (211)
T COG0800 30 LAKALIEGGIPAIEITL-------RTPAALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQFIV 90 (211)
T ss_pred HHHHHHHcCCCeEEEec-------CCCCHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCCEEE
Confidence 34567899999999832 34667889999988774 349999999999999999999999884
No 470
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=82.27 E-value=3.7 Score=38.04 Aligned_cols=76 Identities=33% Similarity=0.375 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCc----CCCCCCcChHH----HHHHHHHHhcCCccEEEcC--CCCC-HHHH----H
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGA----RQLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRR-GTDV----F 280 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg----~~~~~~~~~~~----~l~~i~~~~~~~i~vi~~G--Gi~~-g~dv----~ 280 (354)
|+.+.-.|+.+.++|.++|.+|+++- ...|.+.-+++ .+.+|.+.+ ++||++|+ |..+ +..+ .
T Consensus 15 ~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~~v~~tv~ 92 (238)
T PF13714_consen 15 NVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPENVARTVR 92 (238)
T ss_dssp EESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhHHHHHHHH
Confidence 45566789999999999999987531 12455555543 344555555 89999985 4444 3233 3
Q ss_pred HHHHcCcCEEEEc
Q 018519 281 KALALGASGIFIG 293 (354)
Q Consensus 281 kalalGAd~V~ig 293 (354)
+...+||.++.|-
T Consensus 93 ~~~~aG~agi~IE 105 (238)
T PF13714_consen 93 ELERAGAAGINIE 105 (238)
T ss_dssp HHHHCT-SEEEEE
T ss_pred HHHHcCCcEEEee
Confidence 4445899999884
No 471
>PLN02826 dihydroorotate dehydrogenase
Probab=82.22 E-value=9.1 Score=38.42 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
.|.++-|-+..+.+.+.+.++.++++|+++|+++ ++-. + |..|+.. . +.. ....+++..........-+.+
T Consensus 263 ~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~-NTt~-~-r~~dl~~-~--~~~---~~~GGlSG~pl~~~sl~~v~~ 333 (409)
T PLN02826 263 PPLLVKIAPDLSKEDLEDIAAVALALGIDGLIIS-NTTI-S-RPDSVLG-H--PHA---DEAGGLSGKPLFDLSTEVLRE 333 (409)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE-cccC-c-Cccchhc-c--ccc---ccCCCcCCccccHHHHHHHHH
Confidence 4778777544455578888999999999998875 2211 0 1111110 0 000 000011111000001111233
Q ss_pred HHhhh--cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQ--IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~--~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+.. ..|.++-.||.+.+||...+.+||+.|.|
T Consensus 334 l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv 369 (409)
T PLN02826 334 MYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQL 369 (409)
T ss_pred HHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeee
Confidence 33333 23445555899999999999999999998
No 472
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=81.78 E-value=11 Score=34.61 Aligned_cols=80 Identities=21% Similarity=0.072 Sum_probs=49.5
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
-|.++-+-.+.+ +.+.++++.++++|+++| |+++-..| . + . ....+++
T Consensus 140 ~pVsvKir~g~~-~~~~~la~~l~~aG~d~i--hv~~~~~g---------~--~-----a-------------d~~~I~~ 187 (233)
T cd02911 140 VPVSVKIRAGVD-VDDEELARLIEKAGADII--HVDAMDPG---------N--H-----A-------------DLKKIRD 187 (233)
T ss_pred CCEEEEEcCCcC-cCHHHHHHHHHHhCCCEE--EECcCCCC---------C--C-----C-------------cHHHHHH
Confidence 456665544334 456778888999999965 55432110 0 0 0 0111233
Q ss_pred HHhhhcCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+. ...|.+.-.||.+.+++..+++.|+|+|.|
T Consensus 188 i~--~~ipVIgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 188 IS--TELFIIGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred hc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 22 234555555899999999999999999998
No 473
>PLN02979 glycolate oxidase
Probab=81.76 E-value=3 Score=41.08 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=37.0
Q ss_pred cChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 248 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 248 ~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
..+|+-|..+++.- ++|||+=| |.+++|+.+++.+|+|+|.++.
T Consensus 209 ~ltW~dl~wlr~~~--~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 209 TLSWKDVQWLQTIT--KLPILVKG-VLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CCCHHHHHHHHhcc--CCCEEeec-CCCHHHHHHHHhcCCCEEEECC
Confidence 34678888888755 79998865 8899999999999999999875
No 474
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=81.61 E-value=11 Score=34.90 Aligned_cols=183 Identities=23% Similarity=0.234 Sum_probs=100.1
Q ss_pred ceEecccccccccCChhhHHHHHHHHHcCCcEEecC-CC-----------CCCHHHHHh-------hCCCceEEEE---e
Q 018519 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS-----------TSSVEEVAS-------TGPGIRFFQL---Y 130 (354)
Q Consensus 73 Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s~-~~-----------~~~~eei~~-------~~~~~~~~QL---y 130 (354)
.+++.|-.+ |...|+.+.+.|...+..+ .+ ..+++|+.. ...-|..+=+ |
T Consensus 9 ~~l~~p~~~--------D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~Gy 80 (238)
T PF13714_consen 9 KPLVLPNVW--------DALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGY 80 (238)
T ss_dssp SSEEEEEES--------SHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTS
T ss_pred CcEEeCCCc--------CHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEccccc
Confidence 355566544 4578999999998765432 11 135555432 2222333332 3
Q ss_pred ecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCC
Q 018519 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (354)
Q Consensus 131 ~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (354)
.+++....+.+++.+++|+.+|.|. |. | -+. +. .+.+ . .+.....++..++....+
T Consensus 81 -G~~~~~v~~tv~~~~~aG~agi~IE-Dq-----~-----~~~--~~---~~l~-~------~ee~~~kI~Aa~~a~~~~ 136 (238)
T PF13714_consen 81 -GNDPENVARTVRELERAGAAGINIE-DQ-----R-----CGH--GG---KQLV-S------PEEMVAKIRAAVDARRDP 136 (238)
T ss_dssp -SSSHHHHHHHHHHHHHCT-SEEEEE-SB-----S-----TTT--ST---T-B---------HHHHHHHHHHHHHHHSST
T ss_pred -CchhHHHHHHHHHHHHcCCcEEEee-cc-----c-----cCC--CC---Ccee-C------HHHHHHHHHHHHHhccCC
Confidence 2348888999999999999988775 22 0 000 00 0000 0 001122344444443333
Q ss_pred ccccc-----------cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH
Q 018519 211 SLSWK-----------GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 278 (354)
Q Consensus 211 ~~~w~-----------Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d 278 (354)
.+..- |+ -..+-++...++|||.|.+ +| +.+.+.+.++.+.+ ++|+.+.-+ ....+
T Consensus 137 ~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi--~~-------~~~~~~i~~~~~~~--~~Pl~v~~~-~~~~~ 204 (238)
T PF13714_consen 137 DFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI--PG-------LQSEEEIERIVKAV--DGPLNVNPG-PGTLS 204 (238)
T ss_dssp TSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE--TT-------SSSHHHHHHHHHHH--SSEEEEETT-SSSS-
T ss_pred eEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEcC-CCCCC
Confidence 32111 11 1334556778999999998 43 34556688888888 577766654 22255
Q ss_pred HHHHHHcCcCEEEEcHHHHHH
Q 018519 279 VFKALALGASGIFIGRPVVYS 299 (354)
Q Consensus 279 v~kalalGAd~V~igr~~l~~ 299 (354)
+-..-.+|.+.|..|...+.+
T Consensus 205 ~~eL~~lGv~~v~~~~~~~~a 225 (238)
T PF13714_consen 205 AEELAELGVKRVSYGNSLLRA 225 (238)
T ss_dssp HHHHHHTTESEEEETSHHHHH
T ss_pred HHHHHHCCCcEEEEcHHHHHH
Confidence 555567999999999877664
No 475
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=81.50 E-value=26 Score=33.73 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCcEEecCCCCCCHH---HHHhhCCCceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHH
Q 018519 92 ATARAASAAGTIMTLSSWSTSSVE---EVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (354)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~e---ei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~ 168 (354)
...+.+.++|..++..... .+.+ ++.+. ....+.++ .+ .+.+++++++|++.|+++---..
T Consensus 78 ~~~~~~~~~~v~~v~~~~g-~p~~~i~~lk~~-g~~v~~~v---~s----~~~a~~a~~~GaD~Ivv~g~eag------- 141 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAG-NPGKYIPRLKEN-GVKVIPVV---AS----VALAKRMEKAGADAVIAEGMESG------- 141 (307)
T ss_pred HHHHHHHhCCCCEEEEcCC-CcHHHHHHHHHc-CCEEEEEc---CC----HHHHHHHHHcCCCEEEEECcccC-------
Confidence 5667777889887764432 2222 22222 22233332 12 24467888999999988531110
Q ss_pred hhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCHHHHHHHHHhCCCEEEEe
Q 018519 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTAEDARIAVQAGAAGIIVS 237 (354)
Q Consensus 169 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~~~a~~~~~~G~d~I~vs 237 (354)
+.. .. . ....-+.++.+....|.+.-.||.+.+++..+...|+|+|.+.
T Consensus 142 ---Gh~-g~------~----------~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 142 ---GHI-GE------L----------TTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred ---CCC-CC------C----------cHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 110 00 0 0011134444444456666668999999999999999999983
No 476
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=81.39 E-value=49 Score=31.21 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=97.2
Q ss_pred cceEecccccccccCChhhHHHHHHHHHcCCcEEe--cCC---CCCCHHHHHh-------hC-C-CceEEEEeecCChHH
Q 018519 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVAS-------TG-P-GIRFFQLYVYKDRNV 137 (354)
Q Consensus 72 ~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~--s~~---~~~~~eei~~-------~~-~-~~~~~QLy~~~d~~~ 137 (354)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-.++ ++. .+.+.+|-.+ .. + .+.++++- ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35566776433223333334666666677865443 332 3456654322 22 2 35566653 346677
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccc--
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-- 215 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-- 215 (354)
+.++++.|++.|++++.+.- |.. . +. +.. ....-+.++.+....|.+.+.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y-----------~-~~--~~~------------~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYY-----------N-KP--TQE------------GLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcC-----------C-CC--CHH------------HHHHHHHHHHhcCCCCEEEEECc
Confidence 77888999999999998853 321 0 10 000 001112333444333443332
Q ss_pred ---cc-CCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEE
Q 018519 216 ---GV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 291 (354)
Q Consensus 216 ---Gi-~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~ 291 (354)
|+ ++++..+++.+.. ..+-+= +.. ..+..+.++.+..+++..|+. | ...-.+.++.+||++.+
T Consensus 134 ~~tg~~l~~~~l~~L~~~~-~v~giK-------~s~-~d~~~~~~l~~~~~~~~~v~~-G---~d~~~~~~~~~G~~G~i 200 (285)
T TIGR00674 134 SRTGVSLYPETVKRLAEEP-NIVAIK-------EAT-GNLERISEIKAIAPDDFVVLS-G---DDALTLPMMALGGKGVI 200 (285)
T ss_pred HHhcCCCCHHHHHHHHcCC-CEEEEE-------eCC-CCHHHHHHHHHhcCCCeEEEE-C---chHHHHHHHHcCCCEEE
Confidence 53 6888888887654 322221 111 124445556555544454433 3 12456788999999999
Q ss_pred EcHHHH
Q 018519 292 IGRPVV 297 (354)
Q Consensus 292 igr~~l 297 (354)
.|...+
T Consensus 201 ~~~~~~ 206 (285)
T TIGR00674 201 SVTANV 206 (285)
T ss_pred ehHHHh
Confidence 887544
No 477
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=81.33 E-value=5.8 Score=38.33 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcCCCCC-------------CcChHHHHHHHHHHhc---CCccEEEcCCCCCHHHH
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~~---~~i~vi~~GGi~~g~dv 279 (354)
.|.+.+.|..|.++|++.|.. .-||-.|| ..+.+..+.++.+..+ -+..|+ ...+|+..++
T Consensus 155 lvFS~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm-aASfRn~~~v 231 (313)
T cd00957 155 LLFSFAQAVACAEAGVTLISP--FVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM-GASFRNIGQI 231 (313)
T ss_pred eecCHHHHHHHHHcCCCEEEe--ecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE-ecccCCHHHH
Confidence 467999999999999988765 33442222 2255666777766553 244455 5559999999
Q ss_pred HHHHHcCcCEEEEcHHHHHHHh
Q 018519 280 FKALALGASGIFIGRPVVYSLA 301 (354)
Q Consensus 280 ~kalalGAd~V~igr~~l~~~~ 301 (354)
.+ .+|+|.+-+.-.++-.+.
T Consensus 232 ~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 232 LA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HH--HhCCCeEEcCHHHHHHHH
Confidence 87 589999999987777664
No 478
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=81.31 E-value=2.9 Score=41.51 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=37.4
Q ss_pred cChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcH
Q 018519 248 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 294 (354)
Q Consensus 248 ~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr 294 (354)
..+|+-|..+++.. ++|||+-| |-+.+|+.+++.+|+|+|.++.
T Consensus 231 ~ltW~di~~lr~~~--~~pvivKg-V~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 231 SISWKDLEWIRDFW--DGPMVIKG-ILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEe-cCCHHHHHHHHhCCCCEEEECC
Confidence 35688898898877 78888754 9999999999999999998864
No 479
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.97 E-value=3.9 Score=39.33 Aligned_cols=210 Identities=18% Similarity=0.189 Sum_probs=100.5
Q ss_pred eeEcCeeeccceEecccccccccCChh---h--HHHHHHHHHcCCcEEecCCCCCCHHHHHhhCCCceEEEEeecCChHH
Q 018519 63 TTVLGFKISMPIMIAPTAMQKMAHPEG---E--YATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (354)
Q Consensus 63 t~l~g~~l~~Pi~iAPm~~~~l~~~~~---e--~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~ 137 (354)
.+|.+.++++-|+++||.-.. ..+++ + ...-+.-++-|..+++++....+.+ ....+ ...-||.....+.
T Consensus 4 ~~i~~~~l~NR~~~~p~~~~~-~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~--~~~~~--~~~~~~~~~~~~~ 78 (327)
T cd02803 4 IKIGGLTLKNRIVMAPMTENM-ATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPE--GKGYP--GQLGIYDDEQIPG 78 (327)
T ss_pred cccCCEeeccccEeccccccc-ccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCc--ccCCC--CCcCcCCHHHHHH
Confidence 567889999999999996432 22222 2 2333333445788888765432221 11112 1112232222344
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCccccccc
Q 018519 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGV 217 (354)
Q Consensus 138 ~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi 217 (354)
.+++++.+.+.|++.+ +-+.. .|.+......+.. +...+.... ......+..-....+.++++.
T Consensus 79 ~~~~~~~vh~~g~~~~-~Ql~h--~G~~~~~~~~~~~-~~~~s~~~~-~~~~~~~~~mt~~ei~~~i~~----------- 142 (327)
T cd02803 79 LRKLTEAVHAHGAKIF-AQLAH--AGRQAQPNLTGGP-PPAPSAIPS-PGGGEPPREMTKEEIEQIIED----------- 142 (327)
T ss_pred HHHHHHHHHhCCCHhh-HHhhC--CCcCCCCcCCCCC-ccCCCCCCC-CCCCCCCCcCCHHHHHHHHHH-----------
Confidence 5566667777787643 22211 1222110000000 000000000 000000111112234444432
Q ss_pred CCHHHHHHHHHhCCCEEEEecCCcC---C----------CCCCcC-------hHHHHHHHHHHhcCCccEEE--c-----
Q 018519 218 LTAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGRIPVFL--D----- 270 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~i~vi~--~----- 270 (354)
-.+-|+++.++|+|+|.|....|+ | ..+|-+ ..+.+.+++++++.++||.+ +
T Consensus 143 -~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 143 -FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred -HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 346788999999999999432222 1 112211 14566677777766677765 3
Q ss_pred -CCCCCHH---HHHHHHH-cCcCEEEEcHH
Q 018519 271 -GGVRRGT---DVFKALA-LGASGIFIGRP 295 (354)
Q Consensus 271 -GGi~~g~---dv~kala-lGAd~V~igr~ 295 (354)
+| .+.+ ++++.+. +|+|.+-+...
T Consensus 222 ~~g-~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 222 PGG-LTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 22 2334 4456665 79999987653
No 480
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=80.83 E-value=0.82 Score=40.03 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=46.7
Q ss_pred hhcccceeeccccC-CCCCCccceeEcC-eeeccceEecccccccccCChhhHHHHHHHHHcCCcEEec
Q 018519 41 NAFSRILFRPRILI-DVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 107 (354)
Q Consensus 41 ~~~~~i~l~pr~l~-~~~~vd~st~l~g-~~l~~Pi~iAPm~~~~l~~~~~e~~la~aa~~~G~~~~~s 107 (354)
..|+++.++|..-. ..+++|++|.|.. ..+..|++-|+|...+ +..+|.+.++.|...++.
T Consensus 15 ltfddVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVt------ea~mAi~ma~~GGIGVih 77 (170)
T COG0516 15 LTFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVT------EARMAIAMARDGGIGVMH 77 (170)
T ss_pred ceeccCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHH------HHHHhHHHHHcCCeEEEe
Confidence 47999999995431 2234899999985 8999999999997665 667778888888766663
No 481
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=80.80 E-value=3.4 Score=37.22 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=45.7
Q ss_pred CCEEEEecC-CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcCEEEEcHHHHH
Q 018519 231 AAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 298 (354)
Q Consensus 231 ~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd~V~igr~~l~ 298 (354)
.+-|++.-| =|++ .-++.+.|..+.... .-||+.-|||+-.+|..-++.+|.++|.+||++.-
T Consensus 152 ~~lIvLDi~aVGt~---~G~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 152 PGLIVLDIGAVGTK---SGPDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred CCeEEEEccccccc---cCCCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 455555433 1222 234567776666544 57899999999999999888899999999997653
No 482
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.78 E-value=11 Score=36.68 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred CceEEEEeecCChHH--HHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhH
Q 018519 123 GIRFFQLYVYKDRNV--VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~--~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (354)
-|..+-+-.+.|... ..+.++.++++|++++.||.-+... ++.-| . .-..+
T Consensus 137 iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~---------~y~~~-----a-------------d~~~I 189 (323)
T COG0042 137 IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ---------GYLGP-----A-------------DWDYI 189 (323)
T ss_pred CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh---------cCCCc-----c-------------CHHHH
Confidence 355665554444443 5677888899999999998654321 11101 1 11234
Q ss_pred HHHHhhhc-CCcccccccCCHHHHHHHHH-hCCCEEEE
Q 018519 201 AAYVAGQI-DRSLSWKGVLTAEDARIAVQ-AGAAGIIV 236 (354)
Q Consensus 201 ~~~~~~~~-~~~~~w~Gi~~~~~a~~~~~-~G~d~I~v 236 (354)
.++.+... .|.+.=.+|.++++|+..++ .|+|+|.+
T Consensus 190 ~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 190 KELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred HHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 55555544 34444446899999998877 56999988
No 483
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=80.62 E-value=7.1 Score=37.22 Aligned_cols=74 Identities=27% Similarity=0.237 Sum_probs=48.9
Q ss_pred ccCCHHHHHHHHHh---------CCCEEEEecCCcC----CCCCCcChHH----HHHHHHHHhcCCccEEEc--CCCCCH
Q 018519 216 GVLTAEDARIAVQA---------GAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLD--GGVRRG 276 (354)
Q Consensus 216 Gi~~~~~a~~~~~~---------G~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~i~vi~~--GGi~~g 276 (354)
|+.+.-.|+.+.++ |.++|.+|+++-. ..|.+.-+++ .+..|..++ .+||++| +| .++
T Consensus 15 ~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~--~~Pv~~D~d~G-g~~ 91 (285)
T TIGR02320 15 EAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVT--TKPIILDGDTG-GNF 91 (285)
T ss_pred cCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhc--CCCEEEecCCC-CCH
Confidence 44455678889999 9999999886421 2344444443 233444444 7998876 56 577
Q ss_pred HHH---H-HHHHcCcCEEEE
Q 018519 277 TDV---F-KALALGASGIFI 292 (354)
Q Consensus 277 ~dv---~-kalalGAd~V~i 292 (354)
..+ + +....|+.++.|
T Consensus 92 ~~v~r~V~~l~~aGvaGi~i 111 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCI 111 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEE
Confidence 775 3 344589999999
No 484
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=80.57 E-value=14 Score=35.83 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccc
Q 018519 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKG 216 (354)
Q Consensus 137 ~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G 216 (354)
...+.+++++++|+++|.+|--. + . ..+. + .. ....+.++.+....|.+.-.|
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt-----~--~--~~~~---G--~a-------------~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRT-----R--A--CLFN---G--EA-------------EYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCc-----c--c--cccC---C--Cc-------------ChHHHHHHHHhcCCcEEEeCC
Confidence 46678888999999999887321 0 0 0000 0 00 011244555555566666668
Q ss_pred cCCHHHHHHHHH-hCCCEEEE
Q 018519 217 VLTAEDARIAVQ-AGAAGIIV 236 (354)
Q Consensus 217 i~~~~~a~~~~~-~G~d~I~v 236 (354)
|.++++++.+.+ .|+|+|.+
T Consensus 203 I~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 203 ITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred CCCHHHHHHHHhccCCCEEEE
Confidence 999999999997 69999988
No 485
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=80.53 E-value=12 Score=34.91 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=48.4
Q ss_pred cccccCCHHHHHHHHHhCCCEEEEec-CCcCCCCCCcChHHHHHHHHHHh-cCCccEEEcCCCCCHHHHHHHHHcCcCEE
Q 018519 213 SWKGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKAT-QGRIPVFLDGGVRRGTDVFKALALGASGI 290 (354)
Q Consensus 213 ~w~Gi~~~~~a~~~~~~G~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~-~~~i~vi~~GGi~~g~dv~kalalGAd~V 290 (354)
.|....++..++.+..+|+|+|+++. ||- -+.+.+..+..+. ...+++++==--.+..++.++|.+||++|
T Consensus 16 ~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~-------~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 16 LWLGLADPYAAEICAGAGFDWLLIDGEHAP-------NDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTL 88 (249)
T ss_pred EEEeCCCcHHHHHHHhcCCCEEEEeccCCC-------CCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEE
Confidence 56566789999999999999999976 443 2333333333332 11223332211234568999999999999
Q ss_pred EEcH
Q 018519 291 FIGR 294 (354)
Q Consensus 291 ~igr 294 (354)
++-.
T Consensus 89 ivP~ 92 (249)
T TIGR02311 89 LVPM 92 (249)
T ss_pred EecC
Confidence 9875
No 486
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=80.51 E-value=49 Score=30.70 Aligned_cols=119 Identities=26% Similarity=0.292 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhc-CCc
Q 018519 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI-DRS 211 (354)
Q Consensus 133 ~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 211 (354)
.+++.+.+.++++.+.|++++-+.++... ++|+ ..+.++.+... +..
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~~~----~~d~----------------------------~~v~~vr~~~g~~~~ 131 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGRDP----ARDV----------------------------AVVAALREAVGDDAE 131 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCH----HHHH----------------------------HHHHHHHHhcCCCCE
Confidence 46677777777788889999998875210 1111 01122222111 111
Q ss_pred cccc--ccCCHHHH----HHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc
Q 018519 212 LSWK--GVLTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 212 ~~w~--Gi~~~~~a----~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal 285 (354)
+..| +-.+.++| +.+.+.|++.|-- . ..+..++.+.++++.. .+||++++.+.+..|+.+++..
T Consensus 132 l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe---P-----~~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~ 201 (265)
T cd03315 132 LRVDANRGWTPKQAIRALRALEDLGLDYVEQ---P-----LPADDLEGRAALARAT--DTPIMADESAFTPHDAFRELAL 201 (265)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC---C-----CCcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHh
Confidence 1111 22345555 4556677777742 1 1123467777787766 8999999999999999999987
Q ss_pred C-cCEEEEc
Q 018519 286 G-ASGIFIG 293 (354)
Q Consensus 286 G-Ad~V~ig 293 (354)
+ +|.|++-
T Consensus 202 ~~~d~v~~k 210 (265)
T cd03315 202 GAADAVNIK 210 (265)
T ss_pred CCCCEEEEe
Confidence 6 7988885
No 487
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=80.48 E-value=7.5 Score=37.18 Aligned_cols=76 Identities=25% Similarity=0.257 Sum_probs=51.4
Q ss_pred ccCCHHHHHHHHHhCCCEEEEecCCcC----CCCCCcChHH----HHHHHHHHhcCCccEEEcC--CCCCHHHH---HH-
Q 018519 216 GVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTDV---FK- 281 (354)
Q Consensus 216 Gi~~~~~a~~~~~~G~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~i~vi~~G--Gi~~g~dv---~k- 281 (354)
|+.+.=.|+.+.++|.++|.+|++|-. ..|.+.-+++ .+.+|.+.+ ++||++|. |..+...+ ++
T Consensus 21 g~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~v~~tV~~ 98 (290)
T TIGR02321 21 AAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVNVHYVVPQ 98 (290)
T ss_pred cccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHHHHHHHHH
Confidence 777888899999999999999886411 2355544443 334445555 89999875 44444455 44
Q ss_pred HHHcCcCEEEEc
Q 018519 282 ALALGASGIFIG 293 (354)
Q Consensus 282 alalGAd~V~ig 293 (354)
....|+.++.|-
T Consensus 99 ~~~aGvagi~IE 110 (290)
T TIGR02321 99 YEAAGASAIVME 110 (290)
T ss_pred HHHcCCeEEEEe
Confidence 445999888883
No 488
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=80.28 E-value=6.9 Score=37.79 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=45.9
Q ss_pred Ccc-EEEcCCCCCH---HHHHHHHHcCc--CEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 264 RIP-VFLDGGVRRG---TDVFKALALGA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 264 ~i~-vi~~GGi~~g---~dv~kalalGA--d~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.+| |+.|+|+..- .-+.-|...|| ++|..||+.=+ +++..++..=.+..+.++.-.|..+|++|+.-
T Consensus 241 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~-------~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~v 313 (325)
T TIGR01232 241 HLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWS-------GAVQVYIEQGEDAAREWLRTTGFKNIDDLNKV 313 (325)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhH-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 566 8889998643 22223445799 79999997433 33333444444566777888888888888764
Q ss_pred ceee
Q 018519 338 HIVT 341 (354)
Q Consensus 338 ~l~~ 341 (354)
.-.+
T Consensus 314 l~~t 317 (325)
T TIGR01232 314 LKDT 317 (325)
T ss_pred HHcC
Confidence 4333
No 489
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=79.94 E-value=5.9 Score=38.32 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=48.1
Q ss_pred Ccc-EEEcCCCCCHH---HHHHHHHcCcC--EEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCChhhhccc
Q 018519 264 RIP-VFLDGGVRRGT---DVFKALALGAS--GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 337 (354)
Q Consensus 264 ~i~-vi~~GGi~~g~---dv~kalalGAd--~V~igr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 337 (354)
.+| |+.|+|+..-. -+.-|...||+ +|.+||+.=+ +++..++..=.+..+.++.-.|..+|++|+.-
T Consensus 242 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~v 314 (329)
T PRK04161 242 HLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNRV 314 (329)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 566 88899986431 22234448998 9999997433 23333333335667778888888899888865
Q ss_pred ceeeccCC
Q 018519 338 HIVTEWDA 345 (354)
Q Consensus 338 ~l~~~~~~ 345 (354)
.-.+...|
T Consensus 315 l~~ta~~w 322 (329)
T PRK04161 315 LEETASPW 322 (329)
T ss_pred HHccCCcc
Confidence 44444333
No 490
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=79.87 E-value=21 Score=34.49 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=53.7
Q ss_pred CCceEEEEeecCCh----HHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccch
Q 018519 122 PGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAND 197 (354)
Q Consensus 122 ~~~~~~QLy~~~d~----~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~ 197 (354)
+.|..+-+-.+.+. +...+.++.++++|+++|.+|--+... .++. +.. .+... + ..-
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~--------qg~s-g~~--~~~~~-----~---~~~ 183 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL--------SGLS-PKE--NREIP-----P---LRY 183 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh--------cCCC-ccc--cccCC-----c---hhH
Confidence 34666666432221 455677888999999999998644310 1221 100 00000 0 011
Q ss_pred hhHHHHHhhh-cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 198 SGLAAYVAGQ-IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 198 ~~~~~~~~~~-~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
..+.++.+.. ..|.+.=.||.+.+|+....+ |+|+|-+
T Consensus 184 ~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMi 222 (318)
T TIGR00742 184 ERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMV 222 (318)
T ss_pred HHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 1233444433 345555457999999999886 9999988
No 491
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=79.86 E-value=4.9 Score=39.89 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCC---------CCCCcChH----HHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHc
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQ---------LDYVPATI----MALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 285 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~---------~~~~~~~~----~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalal 285 (354)
.+..+....+-|.|.+-++| |.- -.+.+..+ +....++...+ ..-|-+.||.++++.+.+|+..
T Consensus 263 ~~~~~~~y~~~g~df~~l~~--g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~k-gt~v~a~g~~~t~~~~~eav~~ 339 (400)
T KOG0134|consen 263 AIKMCGLYEDGGLDFVELTG--GTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFK-GTVVYAGGGGRTREAMVEAVKS 339 (400)
T ss_pred hHHHHHHHHhcccchhhccC--chhhhhhhhccccccccccccchhhhhhHHHHHhc-CcEEEecCCccCHHHHHHHHhc
Confidence 34455677888999666633 321 11111121 22333444442 4457778899999999999999
Q ss_pred Cc-CEEEEcHHHHH
Q 018519 286 GA-SGIFIGRPVVY 298 (354)
Q Consensus 286 GA-d~V~igr~~l~ 298 (354)
|. |+|..||+|+.
T Consensus 340 ~~T~~ig~GR~f~a 353 (400)
T KOG0134|consen 340 GRTDLIGYGRPFLA 353 (400)
T ss_pred CCceeEEecchhcc
Confidence 85 59999999975
No 492
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=79.83 E-value=16 Score=35.11 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccc
Q 018519 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKG 216 (354)
Q Consensus 137 ~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~G 216 (354)
...+.+++++++|++.|.+|-..+. .++. + .. ....+.++.+....|.+.-.|
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~---------~~~~---~--~~-------------~~~~i~~i~~~~~ipvi~nGg 200 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA---------QGYS---G--EA-------------NWDIIARVKQAVRIPVIGNGD 200 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc---------ccCC---C--ch-------------hHHHHHHHHHcCCCcEEEeCC
Confidence 4567888899999999988632111 0110 0 00 111234444444455555558
Q ss_pred cCCHHHHHHHH-HhCCCEEEE
Q 018519 217 VLTAEDARIAV-QAGAAGIIV 236 (354)
Q Consensus 217 i~~~~~a~~~~-~~G~d~I~v 236 (354)
|.+++++..+. +.|+|+|.+
T Consensus 201 I~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 201 IFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCHHHHHHHHHhhCCCEEEE
Confidence 99999999998 689999988
No 493
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=79.74 E-value=43 Score=29.53 Aligned_cols=125 Identities=15% Similarity=0.083 Sum_probs=68.9
Q ss_pred cCChHHHHHHHHHHHHcCCCEEEEec-CCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCC
Q 018519 132 YKDRNVVAQLVRRAERAGFKAIALTV-DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (354)
Q Consensus 132 ~~d~~~~~~~~~~a~~~G~~ai~i~v-d~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (354)
..|.....+.++.+.++|++.+.+.+ |.+. . | +.. . ....+.++.+.. ..
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~------------~-~------~~~-~--------~~~~~~~i~~~~-~~ 58 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHF------------V-P------NLT-F--------GPPVVKALRKHT-DL 58 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCC------------C-C------ccc-c--------CHHHHHHHHhhC-CC
Confidence 35777788899999999999998843 1111 0 1 000 0 001122332221 11
Q ss_pred ccc--ccccCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 211 SLS--WKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 211 ~~~--w~Gi~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
++. +.--...+.+..+.++|+|+|+| |++.. ....+.+..+++ ..+.+..+-.-.+..+..+.+..++|
T Consensus 59 ~~~v~l~~~d~~~~~~~~~~~g~dgv~v--h~~~~----~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~d 129 (211)
T cd00429 59 PLDVHLMVENPERYIEAFAKAGADIITF--HAEAT----DHLHRTIQLIKE---LGMKAGVALNPGTPVEVLEPYLDEVD 129 (211)
T ss_pred cEEEEeeeCCHHHHHHHHHHcCCCEEEE--Cccch----hhHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHhhCC
Confidence 111 11101235688888999999999 76521 112233333332 24555555455556777787877799
Q ss_pred EEEEcH
Q 018519 289 GIFIGR 294 (354)
Q Consensus 289 ~V~igr 294 (354)
.+.++.
T Consensus 130 ~i~~~~ 135 (211)
T cd00429 130 LVLVMS 135 (211)
T ss_pred EEEEEE
Confidence 998875
No 494
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.71 E-value=5 Score=33.56 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCCCCCcChH-HHHHHHHHHhcCCccEEEcCCCC-CHHHH----HHHHHcCcCEEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVR-RGTDV----FKALALGASGIF 291 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~vi~~GGi~-~g~dv----~kalalGAd~V~ 291 (354)
..+.++.+.+.++|.|-+|..-++.+ ..+ +.+..+++.--.+++|++-|.+. .+.|. .+..++|.++|+
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~~~----~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGHGE----IDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccCCH----HHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEE
Confidence 45566788999999999987543221 111 12222222211268888877764 33333 557779999885
No 495
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=79.51 E-value=12 Score=33.09 Aligned_cols=70 Identities=27% Similarity=0.288 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhCCCEEEEecC--------CcCCCCCCcChHHHHHHHHHHhcCCccEEEcCCCCCHHHHHHHHHcCcC
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNH--------GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 288 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~--------gg~~~~~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv~kalalGAd 288 (354)
+.++|.|+.|.++|+-++...-. ||- .-.++...+.+|.+++ .|||++---|..-.++.-.-++|.|
T Consensus 21 V~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGHfvEAqiLealgVD 95 (208)
T PF01680_consen 21 VTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVD 95 (208)
T ss_dssp ESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-HHHHHHHHHTT-S
T ss_pred ecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--EeceeeccccceeehhhhHHHhCCc
Confidence 57999999999999999987432 321 1245667899999999 9999999888777776555568999
Q ss_pred EEE
Q 018519 289 GIF 291 (354)
Q Consensus 289 ~V~ 291 (354)
.+=
T Consensus 96 ~ID 98 (208)
T PF01680_consen 96 YID 98 (208)
T ss_dssp EEE
T ss_pred eec
Confidence 874
No 496
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=79.08 E-value=5.3 Score=38.97 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=55.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHH
Q 018519 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (354)
Q Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
.|.++-|.+..+.+.+.+.++.++++|+++|.+. ++-. . +. .+.-+. .+ ....+++..........-+..
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~~-----~~~~~~-~~-~~~GGlSG~~i~p~al~~v~~ 280 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-RS-----LVQGPK-NS-DETGGLSGKPLQDKSTEIIRR 280 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-cc-----cccCcc-cc-CCCCcccCHHHHHHHHHHHHH
Confidence 4788888665555578889999999999998764 2221 1 10 000000 00 000011100000000111222
Q ss_pred HHhhh--cCCcccccccCCHHHHHHHHHhCCCEEEE
Q 018519 203 YVAGQ--IDRSLSWKGVLTAEDARIAVQAGAAGIIV 236 (354)
Q Consensus 203 ~~~~~--~~~~~~w~Gi~~~~~a~~~~~~G~d~I~v 236 (354)
+.+.. ..|.++-.||.+.+||...+.+||+.|.|
T Consensus 281 ~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv 316 (335)
T TIGR01036 281 LYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI 316 (335)
T ss_pred HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence 22222 12344555899999999999999999987
No 497
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=79.02 E-value=55 Score=30.38 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccC
Q 018519 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVL 218 (354)
Q Consensus 139 ~~~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~ 218 (354)
.+.+..++++|++.|.+|+-.-. +.+.+ .++..+.+ ....++..++-.
T Consensus 27 v~aA~~a~~aGAdgITvHlReDr--------------------RHI~d-----------~Dv~~L~~-~~~~~lNlE~a~ 74 (239)
T PRK05265 27 VRAALIAEQAGADGITVHLREDR--------------------RHIRD-----------RDVRLLRE-TLKTELNLEMAA 74 (239)
T ss_pred HHHHHHHHHcCCCEEEecCCCCc--------------------ccCCH-----------HHHHHHHH-hcCCCEEeccCC
Confidence 35677889999999999862111 11111 11222222 122356666777
Q ss_pred CHHHHHHHHHhCCCEEEEecCCcCCC--CCC---cChHHHHHHHHHHhcC---CccEEEcCCCCCHHHHHHHHHcCcCEE
Q 018519 219 TAEDARIAVQAGAAGIIVSNHGARQL--DYV---PATIMALEEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGI 290 (354)
Q Consensus 219 ~~~~a~~~~~~G~d~I~vs~~gg~~~--~~~---~~~~~~l~~i~~~~~~---~i~vi~~GGi~~g~dv~kalalGAd~V 290 (354)
+.|....+.+.-.+.+++---...+. ++| ....+.|..+.+.++. ++.++.| -+.+++..|..+|||.|
T Consensus 75 ~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid---P~~~qi~~A~~~GAd~V 151 (239)
T PRK05265 75 TEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID---PDPEQIEAAAEVGADRI 151 (239)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHhCcCEE
Confidence 89999999999999999854222111 122 2334556666555532 5778887 57889999999999999
Q ss_pred EEcHHH
Q 018519 291 FIGRPV 296 (354)
Q Consensus 291 ~igr~~ 296 (354)
-+=+-.
T Consensus 152 ELhTG~ 157 (239)
T PRK05265 152 ELHTGP 157 (239)
T ss_pred EEechh
Confidence 998743
No 498
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=78.97 E-value=7 Score=37.96 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHhCCCEEEEecC-CcCCCC-CCcChHHHHHHHHHHhcCCccEEEcCCCCCHHH-----------HHHHHH
Q 018519 218 LTAEDARIAVQAGAAGIIVSNH-GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTD-----------VFKALA 284 (354)
Q Consensus 218 ~~~~~a~~~~~~G~d~I~vs~~-gg~~~~-~~~~~~~~l~~i~~~~~~~i~vi~~GGi~~g~d-----------v~kala 284 (354)
-.++.|.+-.+-|+|-|+.-|- +-|... ...|.+++|.+..+.+ =+|+-+-||||.-.| +..++.
T Consensus 270 KPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktV--FVPLTVGGGIrD~~D~dGt~~palEVA~~YFR 347 (541)
T KOG0623|consen 270 KPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTV--FVPLTVGGGIRDFTDADGTYYPALEVAAEYFR 347 (541)
T ss_pred ChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceE--EEEEeecCcccccccCCCcCchhHHHHHHHHh
Confidence 3678899999999999998774 333332 2356678887776655 589999999998665 346778
Q ss_pred cCcCEEEEcHHHHHH
Q 018519 285 LGASGIFIGRPVVYS 299 (354)
Q Consensus 285 lGAd~V~igr~~l~~ 299 (354)
.|||-|.||+-..|+
T Consensus 348 SGADKvSIGsDAVyA 362 (541)
T KOG0623|consen 348 SGADKVSIGSDAVYA 362 (541)
T ss_pred cCCceeeechhHHHH
Confidence 999999999977664
No 499
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=78.95 E-value=63 Score=32.49 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEecCCcCCCCCCcC--hHHHHHHHHHHhcCCccEEEcCCCCCHHHH--HHHH---H-c--C
Q 018519 217 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDV--FKAL---A-L--G 286 (354)
Q Consensus 217 i~~~~~a~~~~~~G~d~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~i~vi~~GGi~~g~dv--~kal---a-l--G 286 (354)
..+.+|+++....|+.-|.++|.=- .|..++ ....+...++.++..-|+++.++-+.|+|- +++. . . +
T Consensus 183 aQse~D~~Rf~~LGa~~v~v~GNlK--fd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~~l~~~~~~ 260 (419)
T COG1519 183 AQSEEDAQRFRSLGAKPVVVTGNLK--FDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQALKKQFPN 260 (419)
T ss_pred ecCHHHHHHHHhcCCcceEEeccee--ecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHHHHHhhCCC
Confidence 3799999999999999987755322 233333 233455556666543678888888998874 2333 2 2 3
Q ss_pred cCEEEEcH
Q 018519 287 ASGIFIGR 294 (354)
Q Consensus 287 Ad~V~igr 294 (354)
+-.+.+=|
T Consensus 261 ~llIlVPR 268 (419)
T COG1519 261 LLLILVPR 268 (419)
T ss_pred ceEEEecC
Confidence 55555555
No 500
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=78.80 E-value=43 Score=31.07 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCchhHHhhhccCCCCcCccccccCCccCcCcccchhhHHHHHhhhcCCcccccccCCH
Q 018519 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKGVLTA 220 (354)
Q Consensus 141 ~~~~a~~~G~~ai~i~vd~p~~g~r~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Gi~~~ 220 (354)
.++.+..+||+.+.|+...... +.......-..+.....++++---+..+
T Consensus 30 ~~Ei~A~aGfDwl~iD~EHapn------------------------------d~~sl~~qL~a~~~~~~~pvVR~p~g~~ 79 (255)
T COG3836 30 MAEILATAGFDWLLIDGEHAPN------------------------------DLQSLLHQLQAVAAYASPPVVRPPVGDP 79 (255)
T ss_pred HHHHHHhcCCCEEEecccccCc------------------------------cHHHHHHHHHHhhccCCCCeeeCCCCCH
Q ss_pred HHHHHHHHhCCCEEEEec------------------CCcCCCCCCcChHHHHHHHHHHh---cCCccEEEcCCCCCHHHH
Q 018519 221 EDARIAVQAGAAGIIVSN------------------HGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDV 279 (354)
Q Consensus 221 ~~a~~~~~~G~d~I~vs~------------------~gg~~~~~~~~~~~~l~~i~~~~---~~~i~vi~~GGi~~g~dv 279 (354)
..++++++.|+..+.|-- +|-|.+.....-...-..+.+++ ++++-+++-=-=+.+.|.
T Consensus 80 ~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~n 159 (255)
T COG3836 80 VMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDN 159 (255)
T ss_pred HHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHH
Q ss_pred HHHHH--cCcCEEEEcHH-HHHHHhhcCHHHHHHHHHHHHHHHHHH
Q 018519 280 FKALA--LGASGIFIGRP-VVYSLAAEGEKGVRRVLEMLREEFELA 322 (354)
Q Consensus 280 ~kala--lGAd~V~igr~-~l~~~~~~G~~gv~~~l~~l~~el~~~ 322 (354)
+.+++ -|.|+|++|-. +-+.++.-|..|-.++-+.+.+-+.+.
T Consensus 160 LDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i 205 (255)
T COG3836 160 LDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARI 205 (255)
T ss_pred HHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Done!