Your job contains 1 sequence.
>018521
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT
FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS
GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK
VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ
RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD
RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018521
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2159961 - symbol:COP8 "AT5G42970" species:3702... 1528 8.9e-157 1
RGD|1302952 - symbol:Cops4 "COP9 signalosome subunit 4" s... 853 3.0e-85 1
UNIPROTKB|Q3SZA0 - symbol:COPS4 "COP9 signalosome complex... 851 4.9e-85 1
MGI|MGI:1349414 - symbol:Cops4 "COP9 (constitutive photom... 851 4.9e-85 1
ZFIN|ZDB-GENE-030131-4317 - symbol:cops4 "COP9 constituti... 851 4.9e-85 1
UNIPROTKB|E2RT55 - symbol:COPS4 "Uncharacterized protein"... 850 6.2e-85 1
UNIPROTKB|D6RAX7 - symbol:COPS4 "COP9 signalosome complex... 850 6.2e-85 1
UNIPROTKB|Q9BT78 - symbol:COPS4 "COP9 signalosome complex... 850 6.2e-85 1
UNIPROTKB|A7Y521 - symbol:COPS4 "COP9 signalosome complex... 850 6.2e-85 1
UNIPROTKB|Q5ZJV0 - symbol:COPS4 "Uncharacterized protein"... 848 1.0e-84 1
DICTYBASE|DDB_G0293844 - symbol:csn4 "proteasome componen... 845 2.1e-84 1
FB|FBgn0027054 - symbol:CSN4 "COP9 complex homolog subuni... 801 9.7e-80 1
ASPGD|ASPL0000047008 - symbol:csnD species:162425 "Emeric... 696 1.3e-68 1
UNIPROTKB|D6RD63 - symbol:COPS4 "COP9 signalosome complex... 612 1.0e-59 1
UNIPROTKB|G4NCX3 - symbol:MGG_00336 "COP9 signalosome com... 565 9.9e-55 1
WB|WBGene00000816 - symbol:csn-4 species:6239 "Caenorhabd... 504 2.9e-48 1
UNIPROTKB|Q9N359 - symbol:csn-4 "COP9 signalosome complex... 504 2.9e-48 1
POMBASE|SPAC22A12.03c - symbol:csn4 "COP9/signalosome com... 179 3.5e-11 1
TAIR|locus:2176100 - symbol:RPN5B "AT5G64760" species:370... 135 4.8e-06 1
DICTYBASE|DDB_G0281051 - symbol:psmD12 "26S proteasome no... 133 8.2e-06 1
WB|WBGene00004462 - symbol:rpn-6.1 species:6239 "Caenorha... 122 0.00013 1
UNIPROTKB|Q20938 - symbol:rpn-6.1 "Probable 26S proteasom... 122 0.00013 1
UNIPROTKB|P68359 - symbol:CSN4 "COP9 signalosome complex ... 96 0.00033 1
CGD|CAL0003109 - symbol:RPN6 species:5476 "Candida albica... 116 0.00061 1
>TAIR|locus:2159961 [details] [associations]
symbol:COP8 "AT5G42970" species:3702 "Arabidopsis
thaliana" [GO:0008180 "signalosome" evidence=IDA;TAS;IPI]
[GO:0009640 "photomorphogenesis" evidence=RCA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010388 "cullin deneddylation"
evidence=RCA;IMP] [GO:0010971 "positive regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043234
"protein complex" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000085
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009585 EMBL:AB008264
GO:GO:0008180 GO:GO:0010388 EMBL:AF176089 EMBL:AF395060
EMBL:AY087068 EMBL:AK176360 IPI:IPI00545035 PIR:T52302
RefSeq:NP_199111.1 UniGene:At.23570 ProteinModelPortal:Q8L5U0
SMR:Q8L5U0 IntAct:Q8L5U0 STRING:Q8L5U0 PaxDb:Q8L5U0 PRIDE:Q8L5U0
EnsemblPlants:AT5G42970.1 GeneID:834312 KEGG:ath:AT5G42970
GeneFarm:4497 TAIR:At5g42970 eggNOG:NOG298640 HOGENOM:HOG000158382
InParanoid:Q8L5U0 KO:K12178 OMA:YNELSYR PhylomeDB:Q8L5U0
ProtClustDB:CLSN2686637 Genevestigator:Q8L5U0 GermOnline:AT5G42970
Uniprot:Q8L5U0
Length = 397
Score = 1528 (542.9 bits), Expect = 8.9e-157, P = 8.9e-157
Identities = 304/353 (86%), Positives = 330/353 (93%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct: 61 FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD TVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
RAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ
Sbjct: 301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQ 353
>RGD|1302952 [details] [associations]
symbol:Cops4 "COP9 signalosome subunit 4" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome"
evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 RGD:1302952
GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:BC079384 IPI:IPI00193349
RefSeq:NP_001004275.1 UniGene:Rn.7506 ProteinModelPortal:Q68FS2
SMR:Q68FS2 STRING:Q68FS2 PhosphoSite:Q68FS2 PRIDE:Q68FS2
Ensembl:ENSRNOT00000003046 GeneID:360915 KEGG:rno:360915
InParanoid:Q68FS2 NextBio:674575 Genevestigator:Q68FS2
GermOnline:ENSRNOG00000023650 Uniprot:Q68FS2
Length = 406
Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
Identities = 181/338 (53%), Positives = 240/338 (71%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL ++QPRV+SFEEQV IR++LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|Q3SZA0 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR EMBL:BC103017 IPI:IPI00700909
RefSeq:NP_001029866.1 UniGene:Bt.48928 ProteinModelPortal:Q3SZA0
SMR:Q3SZA0 STRING:Q3SZA0 PRIDE:Q3SZA0 Ensembl:ENSBTAT00000009128
GeneID:540223 KEGG:bta:540223 CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 InParanoid:Q3SZA0
OrthoDB:EOG4MGS7F NextBio:20878499 Uniprot:Q3SZA0
Length = 406
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 183/338 (54%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>MGI|MGI:1349414 [details] [associations]
symbol:Cops4 "COP9 (constitutive photomorphogenic) homolog,
subunit 4 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349414 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 OMA:YNELSYR CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF071314 EMBL:AK009955 IPI:IPI00131871
RefSeq:NP_036131.1 UniGene:Mm.957 PDB:1UFM PDBsum:1UFM
ProteinModelPortal:O88544 SMR:O88544 IntAct:O88544 STRING:O88544
PhosphoSite:O88544 REPRODUCTION-2DPAGE:O88544 PaxDb:O88544
PRIDE:O88544 Ensembl:ENSMUST00000045993 GeneID:26891 KEGG:mmu:26891
InParanoid:O88544 EvolutionaryTrace:O88544 NextBio:304719
Bgee:O88544 Genevestigator:O88544 GermOnline:ENSMUSG00000035297
Uniprot:O88544
Length = 406
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 182/338 (53%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>ZFIN|ZDB-GENE-030131-4317 [details] [associations]
symbol:cops4 "COP9 constitutive photomorphogenic
homolog subunit 4 (Arabidopsis)" species:7955 "Danio rerio"
[GO:0008150 "biological_process" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 Pfam:PF01399 SMART:SM00088
ZFIN:ZDB-GENE-030131-4317 GO:GO:0005737 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0008180
HOGENOM:HOG000158382 KO:K12178 OMA:YNELSYR CTD:51138
GeneTree:ENSGT00530000063471 HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F
EMBL:BC056527 EMBL:BC065617 IPI:IPI00488179 RefSeq:NP_991119.1
UniGene:Dr.77245 ProteinModelPortal:Q6P0H6 SMR:Q6P0H6 STRING:Q6P0H6
PRIDE:Q6P0H6 Ensembl:ENSDART00000064215 GeneID:325592
KEGG:dre:325592 eggNOG:COG5071 InParanoid:Q6P0H6 NextBio:20809371
Bgee:Q6P0H6 Uniprot:Q6P0H6
Length = 406
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 180/338 (53%), Positives = 236/338 (69%)
Query: 20 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL + D Q K F++ M++++V LV+SRQLL F L L + K +
Sbjct: 25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE ++ W AAQ+L GI L++G + + ++
Sbjct: 85 CHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I ET E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KSIVHET---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I P KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|E2RT55 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008180 "signalosome" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12178 OMA:YNELSYR
GeneTree:ENSGT00530000063471 EMBL:AAEX03016729
RefSeq:XP_003640149.1 ProteinModelPortal:E2RT55 SMR:E2RT55
PRIDE:E2RT55 Ensembl:ENSCAFT00000014418 GeneID:100856586
KEGG:cfa:100856586 NextBio:20853792 Uniprot:E2RT55
Length = 406
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 183/338 (54%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|D6RAX7 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 OMA:YNELSYR HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966770 ProteinModelPortal:D6RAX7 SMR:D6RAX7
Ensembl:ENST00000511653 ArrayExpress:D6RAX7 Bgee:D6RAX7
Uniprot:D6RAX7
Length = 420
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 183/338 (54%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|Q9BT78 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008180 "signalosome" evidence=IDA] [GO:0010388 "cullin
deneddylation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471057 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 CTD:51138 HOVERGEN:HBG051136
OrthoDB:EOG4MGS7F EMBL:AF100757 EMBL:AK001210 EMBL:AK024005
EMBL:BC004302 EMBL:BC009292 EMBL:BC093007 IPI:IPI00171844
RefSeq:NP_001244935.1 RefSeq:NP_057213.2 UniGene:Hs.190384
ProteinModelPortal:Q9BT78 SMR:Q9BT78 DIP:DIP-34516N IntAct:Q9BT78
MINT:MINT-1464138 STRING:Q9BT78 PhosphoSite:Q9BT78 DMDM:55976582
OGP:Q9BT78 REPRODUCTION-2DPAGE:IPI00171844 PaxDb:Q9BT78
PeptideAtlas:Q9BT78 PRIDE:Q9BT78 Ensembl:ENST00000264389
GeneID:51138 KEGG:hsa:51138 UCSC:uc003hoa.3 GeneCards:GC04P083955
HGNC:HGNC:16702 HPA:HPA036894 neXtProt:NX_Q9BT78 PharmGKB:PA26756
InParanoid:Q9BT78 PhylomeDB:Q9BT78 ChiTaRS:COPS4 GenomeRNAi:51138
NextBio:53990 ArrayExpress:Q9BT78 Bgee:Q9BT78 CleanEx:HS_COPS4
Genevestigator:Q9BT78 GermOnline:ENSG00000138663 Uniprot:Q9BT78
Length = 406
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 183/338 (54%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|A7Y521 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9823 "Sus scrofa" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:EF635914
RefSeq:NP_001098774.1 UniGene:Ssc.5658 ProteinModelPortal:A7Y521
SMR:A7Y521 STRING:A7Y521 PRIDE:A7Y521 Ensembl:ENSSSCT00000010121
GeneID:100125960 KEGG:ssc:100125960 Uniprot:A7Y521
Length = 406
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 183/338 (54%), Positives = 239/338 (70%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELSY---KTIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>UNIPROTKB|Q5ZJV0 [details] [associations]
symbol:COPS4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008180 "signalosome" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
OMA:YNELSYR CTD:51138 GeneTree:ENSGT00530000063471
HOVERGEN:HBG051136 OrthoDB:EOG4MGS7F EMBL:AADN02009032
EMBL:AJ720334 IPI:IPI00578250 RefSeq:NP_001006447.1
UniGene:Gga.6980 SMR:Q5ZJV0 IntAct:Q5ZJV0 STRING:Q5ZJV0
Ensembl:ENSGALT00000018144 GeneID:422594 KEGG:gga:422594
InParanoid:Q5ZJV0 NextBio:20825204 Uniprot:Q5ZJV0
Length = 411
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 182/338 (53%), Positives = 236/338 (69%)
Query: 20 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 30 KYRQILEKAIQLSGAQQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPSLPDSTAKEI 89
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 90 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 149
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 150 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 209
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ E LE AL A+ CTILA+AG QRSR+LATL+KDERC +
Sbjct: 210 AQRYNELSY---KSIVHES---ERLE-ALKHALHCTILASAGQQRSRMLATLFKDERCQQ 262
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 263 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 322
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 323 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 360
>DICTYBASE|DDB_G0293844 [details] [associations]
symbol:csn4 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 dictyBase:DDB_G0293844 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 eggNOG:NOG298640 KO:K12178 OMA:YNELSYR EMBL:DQ309432
EMBL:AAFI02000222 RefSeq:XP_628938.1 HSSP:O88544
ProteinModelPortal:Q54B82 SMR:Q54B82 STRING:Q54B82 PRIDE:Q54B82
EnsemblProtists:DDB0233102 GeneID:8629446 KEGG:ddi:DDB_G0293844
ProtClustDB:CLSZ2429214 Uniprot:Q54B82
Length = 393
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 175/354 (49%), Positives = 241/354 (68%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
++ L SA++D + K E+YK IL ++ S + K FI H+ + PLV+SR +L +
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLS 65
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
F L + Q E+ + L +IQ RVV+FEEQV IR LA LYE ++ W ++A+ L
Sbjct: 66 FTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLI 125
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
I LDS RVI +++ V+IARL+LE++++ AE +IN+AS + + + L L +K
Sbjct: 126 AIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLVKNQKLILAHK 185
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
C+ARI+D KR FL+A+LRYYD+SQ + D E + ALS A+ C IL AGPQ
Sbjct: 186 TCFARIMDYKRMFLKASLRYYDLSQCLPK-------DTERMH-ALSCAIVCAILDKAGPQ 237
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSR LATLYKDER +L +Y L+K++LERIL+K E+ FAE+LKPHQ ALL D TVLD
Sbjct: 238 RSRTLATLYKDERSQQLGVYTFLEKMFLERILKKTEVKKFAEQLKPHQMALLSDGNTVLD 297
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
RA+IEHNLLSASKLY NI+F+ELG+LL I +KAEK+AS+M+ E+R+ GSIDQ+
Sbjct: 298 RAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQI 351
>FB|FBgn0027054 [details] [associations]
symbol:CSN4 "COP9 complex homolog subunit 4" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome"
evidence=ISS;NAS;IMP;TAS;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001751 "compound eye photoreceptor cell
differentiation" evidence=IMP] [GO:0000338 "protein deneddylation"
evidence=IMP] [GO:0019781 "NEDD8 activating enzyme activity"
evidence=IMP] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0007095 "mitotic
G2 DNA damage checkpoint" evidence=IGI] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 EMBL:AE013599 GO:GO:0005737 GO:GO:0007095
GO:GO:0050821 GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0044212 GO:GO:0046331 GO:GO:0008180 GO:GO:0001751
GO:GO:0032435 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG298640
KO:K12178 OMA:YNELSYR GeneTree:ENSGT00530000063471 EMBL:AF129082
EMBL:BT004883 RefSeq:NP_001163080.1 RefSeq:NP_477444.1
UniGene:Dm.3377 ProteinModelPortal:Q9V345 SMR:Q9V345 IntAct:Q9V345
MINT:MINT-279079 STRING:Q9V345 PaxDb:Q9V345 PRIDE:Q9V345
EnsemblMetazoa:FBtr0088859 EnsemblMetazoa:FBtr0301230 GeneID:35759
KEGG:dme:Dmel_CG8725 CTD:35759 FlyBase:FBgn0027054
InParanoid:Q9V345 OrthoDB:EOG441NSS PhylomeDB:Q9V345
GenomeRNAi:35759 NextBio:795082 Bgee:Q9V345 GermOnline:CG8725
Uniprot:Q9V345
Length = 407
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 166/343 (48%), Positives = 237/343 (69%)
Query: 15 RQKIEQYKHILSSVISSN--DIVQAKK-FIDHMLSDDVPLVVSRQLLQTFAQELGRLEPE 71
+ + ++Y+ +L +V+++ +++ + F++ ++++ V LV+SRQ+L EL +L +
Sbjct: 27 KDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPDD 86
Query: 72 TQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI 131
K ++++TL ++ PRV+SFEEQV IR LA++YE QQW AA +L GI L++G +
Sbjct: 87 LSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQY 146
Query: 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR 191
+L ++IARLYLED+D+V AE FIN+AS L + + E L + YKVCYAR+LD +R
Sbjct: 147 SVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYRR 206
Query: 192 KFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKD 251
KF+EAA RY ++S R+I +D+ AL A+ CT+LA+AG QRSR+LATL+KD
Sbjct: 207 KFIEAAQRYNELSY---RKI----VDQGERMTALKKALICTVLASAGQQRSRMLATLFKD 259
Query: 252 ERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSA 311
ERC L Y IL+K+YLERI+R+ E+ F L+ HQKA D ++LDRA+ EHNLLSA
Sbjct: 260 ERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAATSDGSSILDRAVFEHNLLSA 319
Query: 312 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
SKLY NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 320 SKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQI 362
>ASPGD|ASPL0000047008 [details] [associations]
symbol:csnD species:162425 "Emericella nidulans"
[GO:0070791 "cleistothecium development" evidence=IMP] [GO:0008180
"signalosome" evidence=ISS;IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 EMBL:BN001307 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AACD01000025 GO:GO:0008180 eggNOG:NOG298640
HOGENOM:HOG000158382 KO:K12178 HSSP:O88544 EMBL:AF236662
RefSeq:XP_659143.1 ProteinModelPortal:Q9C467 STRING:Q9C467
EnsemblFungi:CADANIAT00008166 GeneID:2875265 KEGG:ani:AN1539.2
OMA:QARISDY OrthoDB:EOG4SR158 Uniprot:Q9C467
Length = 408
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 150/363 (41%), Positives = 230/363 (63%)
Query: 3 SALASASAITDQRQKIEQYKHILSSVISSNDIVQAKK----FIDHMLSDDVPLVVSRQLL 58
SALA + + K++ Y +LS +S++ Q ++D +LS+D+ +V +R +L
Sbjct: 8 SALAEIESSASPQNKLQLYNDLLSETVSASPEPQLADDLIYYLDSVLSEDLSIVAARPIL 67
Query: 59 QTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQM 118
+F L +L ETQ ++A + + +Q R S EEQ IRE LAD YE+E+++ AA+
Sbjct: 68 DSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIREILADAYEAEEEYIAAARA 127
Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178
L GI +DS R++ D+ ++ ++I RLYLE+DD +AEAF+N+ L S + L L
Sbjct: 128 LQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRIKNLPSKIEDHELKLH 187
Query: 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG 238
+++ ARI D +R+FL+A+ Y+ +S G +DE QAL+AA+ C +LA AG
Sbjct: 188 FRLSQARIQDARRRFLDASQEYFAVSLAA----G---VDESDRLQALAAAIRCAVLAPAG 240
Query: 239 PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTV 298
PQRSR LATLYKD+R + ++ + IL+K++L+R+L E+ AFA+ L PHQ A D TV
Sbjct: 241 PQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSAFAQRLAPHQLAQTADGTTV 300
Query: 299 LDRAMIEHNLLSASKLYTNISFEELGTLLGI-------APQKAEKIASRMIFEDRMRGSI 351
LD+A++EHNL++ASKLY NI + LG +LG+ A +KAE A+RM+ + R+ GSI
Sbjct: 301 LDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAYAARMVEQGRLSGSI 360
Query: 352 DQV 354
DQ+
Sbjct: 361 DQI 363
>UNIPROTKB|D6RD63 [details] [associations]
symbol:COPS4 "COP9 signalosome complex subunit 4"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 HOGENOM:HOG000158382 HGNC:HGNC:16702
ChiTaRS:COPS4 EMBL:AC021105 EMBL:AC073840 EMBL:AC108473
IPI:IPI00966084 ProteinModelPortal:D6RD63 SMR:D6RD63
Ensembl:ENST00000509317 ArrayExpress:D6RD63 Bgee:D6RD63
Uniprot:D6RD63
Length = 275
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 135/241 (56%), Positives = 171/241 (70%)
Query: 116 AQML--SGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173
AQ++ SG D + + ++L ++IARLYLEDDD V AEA+IN+AS L + S E
Sbjct: 10 AQLMNSSGSHKDLAGKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 69
Query: 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTI 233
L + YKVCYAR+LD +RKF+EAA RY ++S + I E+ E LE AL A+ CTI
Sbjct: 70 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSY---KTIVHES---ERLE-ALKHALHCTI 122
Query: 234 LAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLP 293
LA+AG QRSR+LATL+KDERC +L Y IL+K+YL+RI+R ++ FA L PHQKA
Sbjct: 123 LASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTA 182
Query: 294 DNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
D ++LDRA+IEHNLLSASKLY NI+FEELG LL I KAEKIAS+MI E RM G IDQ
Sbjct: 183 DGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ 242
Query: 354 V 354
+
Sbjct: 243 I 243
>UNIPROTKB|G4NCX3 [details] [associations]
symbol:MGG_00336 "COP9 signalosome complex subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
EMBL:CM001235 Gene3D:1.10.10.10 InterPro:IPR011991 KO:K12178
RefSeq:XP_003718747.1 ProteinModelPortal:G4NCX3 SMR:G4NCX3
EnsemblFungi:MGG_00336T0 GeneID:2675149 KEGG:mgr:MGG_00336
Uniprot:G4NCX3
Length = 420
Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
Identities = 137/362 (37%), Positives = 209/362 (57%)
Query: 1 MESALASASAITDQRQKIEQ----YKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQ 56
+++AL AS D +E+ +K + S ++ D+ K+ ID +L+ + +V +
Sbjct: 6 IKAALEQASQSNDAAAALEKLLVDFKSLSSPATATADL---KRVIDAVLNAQLGVVSTLP 62
Query: 57 LLQTFAQELGRLE-PETQKEIANYTLAQIQPRVV---SFEEQVLIIREKLADLYESEQQW 112
+L F + +LE + E+ NY L +I SF EQ +RE +A +E + W
Sbjct: 63 ILSAFVNAVRQLENDDLWIEVGNYALQRIGENTQTASSFLEQSNALRELIATAHEHNEDW 122
Query: 113 SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172
+ AA+ L+ I LDS R + + ++I R YLE DD+ A +++NK ++ Q
Sbjct: 123 TDAAKTLAEIPLDSSQRRATEEEMVRVWIRIVRNYLEADDSTTAGSYLNKVKNVIFKVQD 182
Query: 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCT 232
LNL +++ ARI D +R+FL A+ Y++IS + + +EE L LS A+ C
Sbjct: 183 RDLNLHFRLSQARINDSQREFLAASHAYHEIS------LSPQIAEEERLH-TLSMAIKCA 235
Query: 233 ILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALL 292
+LA AGP RSR L LY+DER + + Y IL+K++L+R+L E+D FA+ L PHQ A
Sbjct: 236 VLAPAGPLRSRALGRLYRDERSAGQEEYGILEKMFLDRLLSPGEVDKFAQGLSPHQLATT 295
Query: 293 PDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352
D TVL +A++EHNLL AS+LY NI F+ELG LLG+ KAE+ +RMI + R+ G ID
Sbjct: 296 ADGSTVLAKAVVEHNLLGASRLYDNIGFDELGELLGLDGAKAEETTARMIEQGRLVGRID 355
Query: 353 QV 354
QV
Sbjct: 356 QV 357
>WB|WBGene00000816 [details] [associations]
symbol:csn-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0030154 GO:GO:0002119 GO:GO:0040011
GO:GO:0048477 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0000910
GO:GO:0040035 GO:GO:0008180 eggNOG:NOG298640 HOGENOM:HOG000158382
KO:K12178 GeneTree:ENSGT00530000063471 EMBL:FO081813
RefSeq:NP_500034.1 ProteinModelPortal:Q9N359 SMR:Q9N359
DIP:DIP-27076N IntAct:Q9N359 MINT:MINT-1078091 STRING:Q9N359
PaxDb:Q9N359 PRIDE:Q9N359 EnsemblMetazoa:Y55F3AM.15.1
EnsemblMetazoa:Y55F3AM.15.2 GeneID:176927 KEGG:cel:CELE_Y55F3AM.15
UCSC:Y55F3AM.15 CTD:176927 WormBase:Y55F3AM.15 InParanoid:Q9N359
OMA:LCNKYLP NextBio:894618 Uniprot:Q9N359
Length = 412
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 119/341 (34%), Positives = 191/341 (56%)
Query: 22 KHILSSVISSNDIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGR--LEPETQKEIAN 78
K++ + + D + K ID +++ + +VVSRQ + + L LE E K I+
Sbjct: 34 KYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISE 93
Query: 79 YTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDD 133
LA I+ R +S+E+QV I+R LA LYE E + AAQ L I+ D+ G + +
Sbjct: 94 GILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKE 153
Query: 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRK 192
+ C++I +L L+ + AE ++N+ S L V + +++K AR+ D KR+
Sbjct: 154 GAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRR 213
Query: 193 FLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDE 252
F+EAA RYY++S ++ D+ AL A+ C +LA GPQRSR+L ++KDE
Sbjct: 214 FVEAAQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDE 266
Query: 253 RCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSAS 312
R K + ++ K+YL +++ K E++ F +L+ HQKA ++L + EHN+ + S
Sbjct: 267 RAPKCASFELIAKMYLTKVIHKDELEEFEHQLQDHQKAD-EHGESILKGVIQEHNITAIS 325
Query: 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+LY NISF+ LG LLG+ + AE +A MI +R+ G IDQ
Sbjct: 326 QLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQ 366
>UNIPROTKB|Q9N359 [details] [associations]
symbol:csn-4 "COP9 signalosome complex subunit 4"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0030154
GO:GO:0002119 GO:GO:0040011 GO:GO:0048477 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0000910 GO:GO:0040035 GO:GO:0008180
eggNOG:NOG298640 HOGENOM:HOG000158382 KO:K12178
GeneTree:ENSGT00530000063471 EMBL:FO081813 RefSeq:NP_500034.1
ProteinModelPortal:Q9N359 SMR:Q9N359 DIP:DIP-27076N IntAct:Q9N359
MINT:MINT-1078091 STRING:Q9N359 PaxDb:Q9N359 PRIDE:Q9N359
EnsemblMetazoa:Y55F3AM.15.1 EnsemblMetazoa:Y55F3AM.15.2
GeneID:176927 KEGG:cel:CELE_Y55F3AM.15 UCSC:Y55F3AM.15 CTD:176927
WormBase:Y55F3AM.15 InParanoid:Q9N359 OMA:LCNKYLP NextBio:894618
Uniprot:Q9N359
Length = 412
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 119/341 (34%), Positives = 191/341 (56%)
Query: 22 KHILSSVISSNDIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGR--LEPETQKEIAN 78
K++ + + D + K ID +++ + +VVSRQ + + L LE E K I+
Sbjct: 34 KYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISE 93
Query: 79 YTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDD 133
LA I+ R +S+E+QV I+R LA LYE E + AAQ L I+ D+ G + +
Sbjct: 94 GILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKE 153
Query: 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRK 192
+ C++I +L L+ + AE ++N+ S L V + +++K AR+ D KR+
Sbjct: 154 GAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRR 213
Query: 193 FLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDE 252
F+EAA RYY++S ++ D+ AL A+ C +LA GPQRSR+L ++KDE
Sbjct: 214 FVEAAQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFKDE 266
Query: 253 RCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSAS 312
R K + ++ K+YL +++ K E++ F +L+ HQKA ++L + EHN+ + S
Sbjct: 267 RAPKCASFELIAKMYLTKVIHKDELEEFEHQLQDHQKAD-EHGESILKGVIQEHNITAIS 325
Query: 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+LY NISF+ LG LLG+ + AE +A MI +R+ G IDQ
Sbjct: 326 QLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQ 366
>POMBASE|SPAC22A12.03c [details] [associations]
symbol:csn4 "COP9/signalosome complex subunit Csn4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0008180
"signalosome" evidence=IEA] [GO:0010388 "cullin deneddylation"
evidence=NAS] InterPro:IPR000717 InterPro:IPR011990 Pfam:PF01399
SMART:SM00088 PomBase:SPAC22A12.03c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:1.25.40.10 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG298640
OrthoDB:EOG4SR158 PIR:T38143 RefSeq:NP_593233.1
ProteinModelPortal:O13895 IntAct:O13895 STRING:O13895
EnsemblFungi:SPAC22A12.03c.1 GeneID:2541517 KEGG:spo:SPAC22A12.03c
OMA:HEINEIA NextBio:20802615 Uniprot:O13895
Length = 377
Score = 179 (68.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 69/285 (24%), Positives = 128/285 (44%)
Query: 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130
E +KE+ + +Q + E ++ +LA +YE+EQ + L ++
Sbjct: 70 ELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVEKHGHFEN 129
Query: 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190
+ L + +++ YL+ A A + + L + L ++ ++C AR LD
Sbjct: 130 DLEQLLLLR-IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDET 188
Query: 191 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
+FLEAA YY + +Q + G+E I E L + C +LA P + L +
Sbjct: 189 GQFLEAAKCYYRV--LQYKVPGNELIYRENL----CSVAQCLLLAIPSPIVLQFLQEISL 242
Query: 251 DERCSKLKIYPILQKVYLERILRKPEIDAFAEE-LKPHQKALLPDNFTVLD-RAMIEHNL 308
++ Y +++K YL+R E AF L PHQ ++ N + D R +E N+
Sbjct: 243 QPSVREIPFYSLVEK-YLKRKFIGKEDGAFLLPFLLPHQ--VIHMNRLIEDGRHFLETNI 299
Query: 309 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
L S+ + S L ++ ++ + + + M+ ++R+ SIDQ
Sbjct: 300 LFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQ 344
>TAIR|locus:2176100 [details] [associations]
symbol:RPN5B "AT5G64760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0030163 "protein catabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 EMBL:CP002688 Gene3D:1.10.10.10
InterPro:IPR011991 UniGene:At.27199 UniGene:At.71233 GO:GO:0030163
GO:GO:0000502 eggNOG:COG5071 KO:K03035 OMA:CDEKIPL EMBL:AY062093
EMBL:AY062113 EMBL:AY124872 EMBL:AY230833 IPI:IPI00543192
RefSeq:NP_568994.2 ProteinModelPortal:Q8VWK0 SMR:Q8VWK0
IntAct:Q8VWK0 STRING:Q8VWK0 PaxDb:Q8VWK0 PRIDE:Q8VWK0
EnsemblPlants:AT5G64760.1 GeneID:836597 KEGG:ath:AT5G64760
ProtClustDB:CLSN2687519 Genevestigator:Q8VWK0 Uniprot:Q8VWK0
Length = 442
Score = 135 (52.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 80/358 (22%), Positives = 154/358 (43%)
Query: 11 ITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP 70
+ +Q + + + L + S + QA ++ID L + + + + L A G++
Sbjct: 50 LNEQILNLSKKRGQLKQAVQSM-VQQAMQYIDQTLDIETRIELIKTLNNVAA---GKIYV 105
Query: 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130
E ++ LA+I+ E +++E + + + + K A +L + L +
Sbjct: 106 EIERARLTKMLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDQKD 165
Query: 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190
LS+ + R++ D D + + +V + ++ L L LK
Sbjct: 166 FVRAQILSRKIN-PRVF--DADTTKEKKKPKEGENMVEEAPADIPTL---------LVLK 213
Query: 191 RKFLEAALRYY----DISQIQK--RQIGDETIDEEALEQALSAA-VTCTILAAA--GPQR 241
R + E +RYY + +I + + I D +E EQ + C LA A P +
Sbjct: 214 RIYYELMIRYYSHNNEYIEICRSYKAIYDIPSVKENPEQWIPVLRKICWFLALAPHDPMQ 273
Query: 242 SRVLATLYKDERCSKLKIYPILQK--VYLERILRKPEIDAFAEELKPHQKAL---LPDNF 296
S +L +D++ S++ + +L K V +E I + + +E + + + L D
Sbjct: 274 SSLLNATLEDKKLSEIPDFKMLLKQIVTMEVIQWTSLWNKYKDEFENEKNMIGGSLGDKA 333
Query: 297 TV-LDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
L +IEHN+L SK Y+ I+F+ L LL + ++AEK S M+ + ID+
Sbjct: 334 GEDLKLRIIEHNILVVSKYYSRITFKRLAELLCLTTEEAEKHLSEMVVSKALIAKIDR 391
>DICTYBASE|DDB_G0281051 [details] [associations]
symbol:psmD12 "26S proteasome non-ATPase regulatory
subunit 12" species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0005838 "proteasome
regulatory particle" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0281051 GenomeReviews:CM000152_GR EMBL:AAFI02000040
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 eggNOG:COG5071
GO:GO:0005838 KO:K03035 OMA:WDALNEN RefSeq:XP_640786.1
ProteinModelPortal:Q54UJ0 STRING:Q54UJ0 PRIDE:Q54UJ0
EnsemblProtists:DDB0232995 GeneID:8622839 KEGG:ddi:DDB_G0281051
ProtClustDB:CLSZ2729043 Uniprot:Q54UJ0
Length = 447
Score = 133 (51.9 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 63/287 (21%), Positives = 124/287 (43%)
Query: 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 139
TL I + E + + + L+ + E E + AA++L + +++ ++ +++
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVET-YGTMEKREKITF 186
Query: 140 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 198
+ R+ + + D + A+ NK + ++ + + L + Y R ++E A
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLKIDYFKQMIRYFSHSANYIEIAR 246
Query: 199 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 255
Y YD ++K D L Q L IL+A+ ++S +L +Y+ + +
Sbjct: 247 CYLSIYDTPSVEK--------DTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLT 298
Query: 256 KLKIYPILQKVY--LERI-------LRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEH 306
++ Y L + LE I L KPE+D+ K P+ + L + +IEH
Sbjct: 299 DIQNYKDLLNQFKTLELIRWSTFFELNKPELDS-QTVFKTE-----PNAWEDLRKRVIEH 352
Query: 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
N+ S Y IS L LL ++ ++EK S ++ + ID+
Sbjct: 353 NIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDR 399
>WB|WBGene00004462 [details] [associations]
symbol:rpn-6.1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0006915
GO:GO:0006950 GO:GO:0002119 GO:GO:0000003 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511 EMBL:FO081266
InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 63/274 (22%), Positives = 123/274 (44%)
Query: 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKC-VQIARLYL 148
+F Q L R L LY Q++++A + + DL ++ +DD L + ++ ++ Y
Sbjct: 138 TFLRQTLTAR--LVRLYNDLQRYTQALPLAA--DLIRELKKVDDKDVLVEVELEESKAYY 193
Query: 149 EDDDAVNAEAFINKA-----SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203
+ A A + A + V+ Q L+LQ + +A D ++ F A +Y+
Sbjct: 194 NLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAA--D-EKDFKTAFSYFYEA 250
Query: 204 SQIQKRQIGDETIDEEALE-QALSAAVTCTILAAAGPQRSRVL-ATLYKDERCSKLKIYP 261
+ G +++DE+ AL + C ++ + + +L A L S L
Sbjct: 251 FE------GYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMK 304
Query: 262 ILQKVYLERILRKPEI--DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIS 319
+ +R L+ ++ +F +EL+ ++ +F L M+E +L + Y+ +
Sbjct: 305 AIAAAAQKRSLKDFQVAFGSFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQ 362
Query: 320 FEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
E + +GI K EK S+MI + ++ GS+DQ
Sbjct: 363 IEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQ 396
>UNIPROTKB|Q20938 [details] [associations]
symbol:rpn-6.1 "Probable 26S proteasome regulatory subunit
rpn-6.1" species:6239 "Caenorhabditis elegans" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0043248 "proteasome assembly" evidence=IDA] [GO:0006950
"response to stress" evidence=IDA] [GO:0022624 "proteasome
accessory complex" evidence=TAS] [GO:0008340 "determination of
adult lifespan" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005634 GO:GO:0008340 GO:GO:0009792
GO:GO:0006915 GO:GO:0006950 GO:GO:0002119 GO:GO:0000003
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0043248 GO:GO:0006511
EMBL:FO081266 InterPro:IPR013143 SMART:SM00753 eggNOG:COG5159
GeneTree:ENSGT00530000063301 GO:GO:0022624 PIR:H88493
RefSeq:NP_001022621.1 RefSeq:NP_001022622.1
ProteinModelPortal:Q20938 SMR:Q20938 STRING:Q20938 PaxDb:Q20938
PRIDE:Q20938 EnsemblMetazoa:F57B9.10a GeneID:175972
KEGG:cel:CELE_F57B9.10 UCSC:F57B9.10a CTD:175972 WormBase:F57B9.10a
WormBase:F57B9.10b HOGENOM:HOG000210093 InParanoid:Q20938 KO:K03036
OMA:SGILDQG NextBio:890556 Uniprot:Q20938
Length = 438
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 63/274 (22%), Positives = 123/274 (44%)
Query: 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKC-VQIARLYL 148
+F Q L R L LY Q++++A + + DL ++ +DD L + ++ ++ Y
Sbjct: 138 TFLRQTLTAR--LVRLYNDLQRYTQALPLAA--DLIRELKKVDDKDVLVEVELEESKAYY 193
Query: 149 EDDDAVNAEAFINKA-----SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203
+ A A + A + V+ Q L+LQ + +A D ++ F A +Y+
Sbjct: 194 NLSNIGRARASLTGARTTANAIYVNPRMQAALDLQSGILHAA--D-EKDFKTAFSYFYEA 250
Query: 204 SQIQKRQIGDETIDEEALE-QALSAAVTCTILAAAGPQRSRVL-ATLYKDERCSKLKIYP 261
+ G +++DE+ AL + C ++ + + +L A L S L
Sbjct: 251 FE------GYDSVDEKVSALTALKYMLLCKVMLDLPDEVNSLLSAKLALKYNGSDLDAMK 304
Query: 262 ILQKVYLERILRKPEI--DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNIS 319
+ +R L+ ++ +F +EL+ ++ +F L M+E +L + Y+ +
Sbjct: 305 AIAAAAQKRSLKDFQVAFGSFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQ 362
Query: 320 FEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
E + +GI K EK S+MI + ++ GS+DQ
Sbjct: 363 IEHVAQQIGIDRSKVEKKLSQMILDQKLSGSLDQ 396
>UNIPROTKB|P68359 [details] [associations]
symbol:CSN4 "COP9 signalosome complex subunit 4"
species:3712 "Brassica oleracea" [GO:0005515 "protein binding"
evidence=IPI] GO:GO:0007275 GO:GO:0005737 GO:GO:0009585
GO:GO:0008180 IntAct:P68359 Uniprot:P68359
Length = 45
Score = 96 (38.9 bits), Expect = 0.00033, P = 0.00033
Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 288 QKALLPDNFTVLDRAMIEHN-LLSASK 313
+KA LPD TVLDRAMIEHN LLSASK
Sbjct: 19 KKAYLPDKSTVLDRAMIEHNNLLSASK 45
>CGD|CAL0003109 [details] [associations]
symbol:RPN6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=IEA] [GO:0034515 "proteasome
storage granule" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043248 "proteasome assembly"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
Pfam:PF01399 SMART:SM00088 CGD:CAL0003109 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 InterPro:IPR013143
SMART:SM00753 EMBL:AACQ01000138 KO:K03036 RefSeq:XP_709940.1
ProteinModelPortal:Q59TR9 STRING:Q59TR9 GeneID:3645352
KEGG:cal:CaO19.1299 Uniprot:Q59TR9
Length = 435
Score = 116 (45.9 bits), Expect = 0.00061, P = 0.00061
Identities = 64/309 (20%), Positives = 139/309 (44%)
Query: 56 QLLQTFAQELGRLEPETQKEI---ANYTLAQIQPRV---VSFEEQVLIIREKLADLYESE 109
++++T ++ +L + +K + + T + +Q + +SF Q L + KL+DL +
Sbjct: 97 KIVKTLIEDFDKLSAKDEKSLDIQIDVTKSSMQWAIESKLSFLRQSLQL--KLSDLLYQK 154
Query: 110 QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI--ARLYLEDDDAVNAEAFINKASFLV 167
+ +A ++++ +L + +DD L + VQ+ +++Y + A+A + A
Sbjct: 155 KHHHEAIKIIN--ELLREYKKLDDKSSLVE-VQLLESKIYHALRNIPKAKAALTSARTSA 211
Query: 168 SSSQQEVLNLQYKV-CYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALS 226
+S + LQ ++ C + IL+ + K + A Y+ + D+ L+ L
Sbjct: 212 NSIYCPTI-LQAELDCQSGILNSEDKDYKTAFSYF-YESFEGFNSQDDPRSIIVLKYMLL 269
Query: 227 AAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPE--IDAFAEEL 284
+ ++ + YK + +K + Y R L++ E + +A EL
Sbjct: 270 TKIMLNLIDDVNNILNNKNVIKYKSKDIDAMKS---IAMAYSNRSLKEFENSLLTYANEL 326
Query: 285 KPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFE 344
K A++ ++F L ++E NLL + Y+ + + ++G+ Q+ E S+MI +
Sbjct: 327 K--SDAIIKNHFNALYDNLLEQNLLKIIESYSCVELSHISKVIGLNLQQVEGKLSQMILD 384
Query: 345 DRMRGSIDQ 353
G +DQ
Sbjct: 385 KVFYGVLDQ 393
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 354 0.00079 117 3 10 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 616 (65 KB)
Total size of DFA: 290 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.60u 0.10s 42.70t Elapsed: 00:00:02
Total cpu time: 42.61u 0.10s 42.71t Elapsed: 00:00:02
Start: Mon May 20 17:03:42 2013 End: Mon May 20 17:03:44 2013