BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018521
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain
          Length = 84

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 47/57 (82%)

Query: 298 VLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
           +LDRA+IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ+
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67


>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad
 pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad
 pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
          Length = 330

 Score = 34.3 bits (77), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 133 DTFRLSKCVQIARLYLEDDD-----AVNAEAFINKASFLVSSSQQEVLNLQYKVCYAR 185
           D+F+ +  V  A  Y + DD     A N +  IN A     +  + +LN Q  +CY R
Sbjct: 85  DSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGR 142


>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
           Factor  3b
          Length = 96

 Score = 28.1 bits (61), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE--AFINKASFLVSSSQQEVLN 176
           +  +D +   +++ DTF     +      + D D  N++  AFIN ASF  S +  E +N
Sbjct: 10  IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69

Query: 177 LQY 179
            QY
Sbjct: 70  GQY 72


>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
           Burkholderia Thailandensis Bound To Histidine
 pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
           Burkholderia Thailandensis Bound To Histidine
          Length = 467

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 276 EIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLL 309
           E+ +F + L      L P+N   + RA IEHN+L
Sbjct: 93  EMYSFVDALNGENLTLRPENTAAVVRAAIEHNML 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,483
Number of Sequences: 62578
Number of extensions: 314558
Number of successful extensions: 804
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 10
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)