BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018521
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 625 bits (1613), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/353 (86%), Positives = 330/353 (93%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct: 61 FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD TVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
RAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ
Sbjct: 301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQ 353
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 239/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL ++QPRV+SFEEQV IR++LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 340 bits (873), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 340 bits (873), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 182/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 340 bits (873), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 182/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 340 bits (873), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 182/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 340 bits (873), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 182/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 340 bits (872), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 238/338 (70%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV +R+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASVRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/338 (52%), Positives = 235/338 (69%), Gaps = 10/338 (2%)
Query: 20 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL + D Q K F++ M++++V LV+SRQLL F L L + K +
Sbjct: 25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE ++ W AAQ+L GI L++G + + ++
Sbjct: 85 CHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I ET EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKSIVHETERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
NI+FEELG LL I P KAEKIAS+MI E RM G IDQ+
Sbjct: 318 NITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQI 355
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/354 (49%), Positives = 241/354 (68%), Gaps = 8/354 (2%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
++ L SA++D + K E+YK IL ++ S + K FI H+ + PLV+SR +L +
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLS 65
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
F L + Q E+ + L +IQ RVV+FEEQV IR LA LYE ++ W ++A+ L
Sbjct: 66 FTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLI 125
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
I LDS RVI +++ V+IARL+LE++++ AE +IN+AS + + + L L +K
Sbjct: 126 AIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLVKNQKLILAHK 185
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
C+ARI+D KR FL+A+LRYYD+SQ + D E + ALS A+ C IL AGPQ
Sbjct: 186 TCFARIMDYKRMFLKASLRYYDLSQCLPK-------DTERM-HALSCAIVCAILDKAGPQ 237
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSR LATLYKDER +L +Y L+K++LERIL+K E+ FAE+LKPHQ ALL D TVLD
Sbjct: 238 RSRTLATLYKDERSQQLGVYTFLEKMFLERILKKTEVKKFAEQLKPHQMALLSDGNTVLD 297
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
RA+IEHNLLSASKLY NI+F+ELG+LL I +KAEK+AS+M+ E+R+ GSIDQ+
Sbjct: 298 RAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQI 351
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/344 (48%), Positives = 235/344 (68%), Gaps = 10/344 (2%)
Query: 14 QRQKIEQYKHILSSVISSND---IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP 70
+ + ++Y+ +L +V+++ I + F++ ++++ V LV+SRQ+L EL +L
Sbjct: 26 HKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPD 85
Query: 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130
+ K ++++TL ++ PRV+SFEEQV IR LA++YE QQW AA +L GI L++G +
Sbjct: 86 DLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQ 145
Query: 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190
+L ++IARLYLED+D+V AE FIN+AS L + + E L + YKVCYAR+LD +
Sbjct: 146 YSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYR 205
Query: 191 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
RKF+EAA RY ++S R+I +D+ AL A+ CT+LA+AG QRSR+LATL+K
Sbjct: 206 RKFIEAAQRYNELSY---RKI----VDQGERMTALKKALICTVLASAGQQRSRMLATLFK 258
Query: 251 DERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLS 310
DERC L Y IL+K+YLERI+R+ E+ F L+ HQKA D ++LDRA+ EHNLLS
Sbjct: 259 DERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAATSDGSSILDRAVFEHNLLS 318
Query: 311 ASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
ASKLY NI+FEELG LL I KAEKIAS+MI E RM G IDQ+
Sbjct: 319 ASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQI 362
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 229/363 (63%), Gaps = 18/363 (4%)
Query: 3 SALASASAITDQRQKIEQYKHILSSVISSNDIVQAKK----FIDHMLSDDVPLVVSRQLL 58
SALA + + K++ Y +LS +S++ Q ++D +LS+D+ +V +R +L
Sbjct: 8 SALAEIESSASPQNKLQLYNDLLSETVSASPEPQLADDLIYYLDSVLSEDLSIVAARPIL 67
Query: 59 QTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQM 118
+F L +L ETQ ++A + + +Q R S EEQ IRE LAD YE+E+++ AA+
Sbjct: 68 DSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIREILADAYEAEEEYIAAARA 127
Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178
L GI +DS R++ D+ ++ ++I RLYLE+DD +AEAF+N+ L S + L L
Sbjct: 128 LQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRIKNLPSKIEDHELKLH 187
Query: 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG 238
+++ ARI D +R+FL+A+ Y+ +S +DE QAL+AA+ C +LA AG
Sbjct: 188 FRLSQARIQDARRRFLDASQEYFAVSLAAG-------VDESDRLQALAAAIRCAVLAPAG 240
Query: 239 PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTV 298
PQRSR LATLYKD+R + ++ + IL+K++L+R+L E+ AFA+ L PHQ A D TV
Sbjct: 241 PQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSAFAQRLAPHQLAQTADGTTV 300
Query: 299 LDRAMIEHNLLSASKLYTNISFEELGTLLGI-------APQKAEKIASRMIFEDRMRGSI 351
LD+A++EHNL++ASKLY NI + LG +LG+ A +KAE A+RM+ + R+ GSI
Sbjct: 301 LDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAYAARMVEQGRLSGSI 360
Query: 352 DQV 354
DQ+
Sbjct: 361 DQI 363
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 218 bits (556), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/266 (44%), Positives = 169/266 (63%), Gaps = 10/266 (3%)
Query: 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 151
++ I E LA +ES+ ++ AA+ L+ I LDS R + D ++ ++I R YLEDD
Sbjct: 117 DQTATIYEELLAAAHESQNSFTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDD 176
Query: 152 DAVNAEAFINKASFLVS--SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKR 209
DA +AE ++NK ++ + VLNL +K+ ARI D R+FL A+ YY+IS
Sbjct: 177 DATSAETYLNKLKNIIHNVADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISL---- 232
Query: 210 QIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE 269
I EE LS A+ C +LA AGP RSRVLA LYKDER + L+ + IL+K++L+
Sbjct: 233 ---SPAIAEEERLHTLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLD 289
Query: 270 RILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI 329
R+L + E++ FA+ L PHQ A D TVL +AM+EHNLL+ S+LY NI F+ LG+ LG+
Sbjct: 290 RLLARAEVEKFAQGLAPHQLATTSDGSTVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGL 349
Query: 330 -APQKAEKIASRMIFEDRMRGSIDQV 354
+ KAE+I +RMI + R+ GSIDQ+
Sbjct: 350 DSGNKAEEITARMIEQGRLAGSIDQI 375
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 191 bits (486), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 195/357 (54%), Gaps = 22/357 (6%)
Query: 12 TDQRQKIEQYKHILSSVISSN-----DIVQAKKFIDHMLS-DDVPLVVSRQLLQTFAQEL 65
TD + + E + + + N D + K ID +++ + +VVSRQ + + L
Sbjct: 19 TDHKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERL 78
Query: 66 G--RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID 123
LE E K I+ LA I+ R +S+E+QV I+R LA LYE E + AAQ L I+
Sbjct: 79 DNQHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAIN 138
Query: 124 LDS-----GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL-VSSSQQEVLNL 177
D+ G + + + C++I +L L+ + AE ++N+ S L V + +
Sbjct: 139 SDTSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQI 198
Query: 178 QYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAA 237
++K AR+ D KR+F+EAA RYY++S ++ D+ AL A+ C +LA
Sbjct: 199 EHKALQARVSDAKRRFVEAAQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKP 251
Query: 238 GPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFT 297
GPQRSR+L ++KDER K + ++ K+YL +++ K E++ F +L+ HQKA +
Sbjct: 252 GPQRSRLLTLIFKDERAPKCASFELIAKMYLTKVIHKDELEEFEHQLQDHQKA-DEHGES 310
Query: 298 VLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
+L + EHN+ + S+LY NISF+ LG LLG+ + AE +A MI +R+ G IDQ
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQT 367
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 156/354 (44%), Gaps = 34/354 (9%)
Query: 6 ASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQEL 65
A A T++++ EQ K L+ SN+ + + +L DV + +S
Sbjct: 21 ALALHYTNEKELFEQAKRCLNICCGSNNFAKRNDVLFSLL--DVAVSISSL--------- 69
Query: 66 GRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLD 125
E +KE+ + +Q + E ++ +LA +YE+EQ + L ++
Sbjct: 70 -----ELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVEKH 124
Query: 126 SGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA---SFLVSSSQQEVLNLQYKVC 182
+ L + +++ YL+ A A + + +F VS+ Q L ++ ++C
Sbjct: 125 GHFENDLEQLLLLR-IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQ---LLMELQLC 180
Query: 183 YARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRS 242
AR LD +FLEAA YY + +Q + G+E I E L + C +LA P
Sbjct: 181 NARALDETGQFLEAAKCYYRV--LQYKVPGNELIYRE----NLCSVAQCLLLAIPSPIVL 234
Query: 243 RVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAF-AEELKPHQKALLPDNFTVLD- 300
+ L + ++ Y +++K YL+R E AF L PHQ ++ N + D
Sbjct: 235 QFLQEISLQPSVREIPFYSLVEK-YLKRKFIGKEDGAFLLPFLLPHQ--VIHMNRLIEDG 291
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
R +E N+L S+ + S L ++ ++ + + + M+ ++R+ SIDQ
Sbjct: 292 RHFLETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQC 345
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 272 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 326
RK + F + L+ H+K L+ D L+R M+E + + Y+ I + +
Sbjct: 283 FRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIARV 342
Query: 327 LGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+G+ EK +RMI + ++ GSIDQ
Sbjct: 343 IGMTVPPTEKAIARMILDKKLMGSIDQ 369
>sp|P68359|CSN4_BRAOL COP9 signalosome complex subunit 4 (Fragments) OS=Brassica oleracea
GN=CSN4 PE=1 SV=1
Length = 45
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 288 QKALLPDNFTVLDRAMIEH-NLLSASK 313
+KA LPD TVLDRAMIEH NLLSASK
Sbjct: 19 KKAYLPDKSTVLDRAMIEHNNLLSASK 45
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 190 KRKFLEAALRYYDISQIQKR 209
KRKFL+AALRYY ISQI+K+
Sbjct: 1 KRKFLDAALRYYSISQIEKK 20
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 125/290 (43%), Gaps = 34/290 (11%)
Query: 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 139
TL I + E + + + L+ + E E + AA++L + +++ ++ +++
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVET-YGTMEKREKITF 186
Query: 140 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 198
+ R+ + + D + A+ NK + ++ + + L + Y R ++E A
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLKIDYFKQMIRYFSHSANYIEIAR 246
Query: 199 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 255
Y YD ++K D L Q L IL+A+ ++S +L +Y+ + +
Sbjct: 247 CYLSIYDTPSVEK--------DTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLT 298
Query: 256 KLKIYPILQKVY--LERI-------LRKPEIDA---FAEELKPHQKALLPDNFTVLDRAM 303
++ Y L + LE I L KPE+D+ F E P+ + L + +
Sbjct: 299 DIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQTVFKTE---------PNAWEDLRKRV 349
Query: 304 IEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
IEHN+ S Y IS L LL ++ ++EK S ++ + ID+
Sbjct: 350 IEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDR 399
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 218 EEALEQALSAAVTCTILAAA-----GPQRSRVLATLYKDERCSKLKIYPILQKVY-LERI 271
E E AL TC IL+ G ++ +L L + P L+ + L
Sbjct: 179 EGDYESALKCFHTCVILSTNRDLVLGAEKRVILCMLLSSDYSIPYPCKPSLRIYFKLASA 238
Query: 272 LRKPEIDAFAEELKPHQKALLPDNFTV----LDRAMIEHNLLSASKLYTNISFEELGTLL 327
+++ +I F E L+ ++ L+ L + +I+ + S +Y+ IS+E++ +L
Sbjct: 239 VKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDIAHIL 298
Query: 328 GIAPQKAEKIASRMIFEDRMRGSI 351
GI + E + R I + ++G +
Sbjct: 299 GINSGEVEYLVKRTIRKGLIKGKV 322
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 272 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 326
RK + F + L H+ L+ D L+R M+E + + Y+ I + +
Sbjct: 288 FRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARV 347
Query: 327 LGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+G+ E+ +RMI + ++ GSIDQ
Sbjct: 348 IGMTVPPVERAIARMILDKKLMGSIDQ 374
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 274 KPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTLLG 328
K +I AF + LK ++K ++ D F L R + LL K YT I + L
Sbjct: 324 KNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELN 383
Query: 329 IAPQKAEKIASRMIFEDRMRGSIDQV 354
I E + +I ++++RGSIDQV
Sbjct: 384 IPSSDVESLLVSLILDNKIRGSIDQV 409
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 279 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIA 338
+F +EL+ ++ +F L M+E +L + Y+ + E + +GI K EK
Sbjct: 324 SFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKL 381
Query: 339 SRMIFEDRMRGSIDQ 353
S+MI + ++ GS+DQ
Sbjct: 382 SQMILDQKLSGSLDQ 396
>sp|B2V7L9|RPOC_SULSY DNA-directed RNA polymerase subunit beta' OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=rpoC PE=3 SV=1
Length = 1579
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 175 LNLQYKVCYAR-----ILDLKRKFLEAALRYYDISQIQK 208
LNL YK+ Y R I+++ RKF E LR+ DI +K
Sbjct: 233 LNLSYKMNYPRLYNKAIIEIARKFSEVGLRFGDIEPTEK 271
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 271
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 272 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 317
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
I+ + + LL ++ ++E S ++ + +D++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRL 409
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 271
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 272 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 317
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
I+ + + LL ++ ++E S ++ + +D++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRL 409
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRK 274
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ +E +
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 275 PEIDAFAEEL-KPHQKALLPDNFTV----------LDRAMIEHNLLSASKLYTNISFEEL 323
++ + EL K ++ D F L ++EHN+ +K YT I+ + +
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRM 378
Query: 324 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354
LL ++ ++E S ++ + +D++
Sbjct: 379 AQLLDLSVDESEAFLSNLVVNKTIFAKVDRL 409
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 276 EIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTLLGIA 330
+I+ F L+ H+ ++ D F L R + L+ + Y NI+ + L I
Sbjct: 323 DINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIE 382
Query: 331 PQKAEKIASRMIFEDRMRGSIDQV 354
P + E + I +D ++G IDQV
Sbjct: 383 PAEVESLLVSCILDDTIKGRIDQV 406
>sp|Q5XPK0|SCARL_ARATH Scar-like domain-containing protein WAVE 5 OS=Arabidopsis thaliana
GN=WAVE5 PE=1 SV=2
Length = 2028
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 211 IGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLER 270
+G+ +DEE L + L TC L A P + T++ +E ++YP L+++ E+
Sbjct: 1135 LGEVVLDEEVLPEQLD--TTCRSLTKAAP-----IMTIFPEE---PPEVYPSLEELPEEK 1184
Query: 271 ILRKPEIDAFAEELKPH-QKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI 329
I ++ E+D + P+ +A+ + L+ H L S Y S EE L+G
Sbjct: 1185 IAQEEEVD---DATHPYFSEAVCDEKIPPLEDPGSTHPSLEESVPYEEASHEE---LVGT 1238
Query: 330 APQKAEKIASRMIFEDR 346
P + + F D
Sbjct: 1239 NPFLESAFPNEIGFPDE 1255
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRK 274
+ + +QAL + V ILA ++S ++ + D++ ++ Y L K++ +E +
Sbjct: 259 ESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 275 PEIDAFAEEL-KPHQKALLPDNFTVLDRA----------MIEHNLLSASKLYTNISFEEL 323
++ + EL K + D F+ + ++EHN+ +K YT I+ + +
Sbjct: 319 TLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRM 378
Query: 324 GTLLGIAPQKAEKIASRMIFE-------DRMRGSID 352
LL ++ ++E S ++ DR+ G I+
Sbjct: 379 AQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVIN 414
>sp|Q3IJ28|SYGB_PSEHT Glycine--tRNA ligase beta subunit OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=glyS PE=3 SV=1
Length = 689
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 25 LSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQI 84
+S++++ NDI + +L+DD V++ Q+ + FA EL L + A LA I
Sbjct: 585 VSNILAKNDITSEGNVDESLLTDDAEKVLAAQVAK-FATELAPLYASGNYQEALSQLAGI 643
Query: 85 QPRVVSFEEQVLII 98
+ V SF + V+++
Sbjct: 644 RQSVDSFFDNVMVM 657
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,719,060
Number of Sequences: 539616
Number of extensions: 4286990
Number of successful extensions: 14182
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14111
Number of HSP's gapped (non-prelim): 71
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)