Query 018521
Match_columns 354
No_of_seqs 216 out of 446
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 5.1E-58 1.7E-62 462.1 24.8 293 56-354 95-396 (445)
2 4b4t_R RPN7, 26S proteasome re 100.0 3.6E-36 1.2E-40 301.3 14.6 251 86-354 121-384 (429)
3 3txn_A 26S proteasome regulato 100.0 2.5E-31 8.6E-36 263.3 31.5 319 19-354 20-353 (394)
4 4b4t_Q 26S proteasome regulato 100.0 1.6E-28 5.4E-33 238.4 23.4 312 33-354 70-393 (434)
5 4b4t_S RPN3, 26S proteasome re 99.9 1.7E-22 5.9E-27 204.7 11.0 248 91-353 176-438 (523)
6 4b4t_O 26S proteasome regulato 99.9 1.4E-20 4.7E-25 186.6 19.9 245 102-354 82-344 (393)
7 1ufm_A COP9 complex subunit 4; 99.8 3E-19 1E-23 139.8 4.1 63 292-354 5-67 (84)
8 3t5x_A PCI domain-containing p 99.4 1.4E-12 4.8E-17 118.0 13.8 160 175-353 12-183 (203)
9 3t5v_B Nuclear mRNA export pro 99.3 2.6E-10 8.9E-15 114.6 19.5 230 109-353 139-419 (455)
10 4b0z_A RPN12, 26S proteasome r 98.2 2.5E-05 8.4E-10 71.5 14.7 198 142-348 12-225 (229)
11 3ro3_A PINS homolog, G-protein 97.3 0.0041 1.4E-07 49.3 12.8 114 93-207 6-119 (164)
12 3chm_A COP9 signalosome comple 97.3 0.002 6.7E-08 56.2 11.0 119 226-354 27-148 (169)
13 3ro3_A PINS homolog, G-protein 97.2 0.0032 1.1E-07 50.0 10.4 113 94-207 47-159 (164)
14 3nf1_A KLC 1, kinesin light ch 97.0 0.028 9.7E-07 49.9 16.0 191 14-207 23-225 (311)
15 3u3w_A Transcriptional activat 96.9 0.058 2E-06 49.0 18.0 185 20-208 77-268 (293)
16 3ro2_A PINS homolog, G-protein 96.9 0.092 3.1E-06 46.6 18.4 114 93-207 180-293 (338)
17 4a1s_A PINS, partner of inscut 96.8 0.081 2.8E-06 49.5 18.3 113 94-207 221-333 (411)
18 3sf4_A G-protein-signaling mod 96.7 0.23 7.8E-06 45.8 20.6 115 93-208 184-298 (406)
19 3gw4_A Uncharacterized protein 96.6 0.047 1.6E-06 45.6 13.9 112 95-207 25-137 (203)
20 1elr_A TPR2A-domain of HOP; HO 96.6 0.015 5.2E-07 44.5 9.9 106 94-206 2-108 (131)
21 2dba_A Smooth muscle cell asso 96.6 0.041 1.4E-06 43.3 12.6 103 95-207 27-129 (148)
22 3sf4_A G-protein-signaling mod 96.6 0.028 9.6E-07 52.1 13.1 113 95-208 226-338 (406)
23 2qfc_A PLCR protein; TPR, HTH, 96.5 0.26 8.9E-06 44.6 18.7 110 95-206 154-266 (293)
24 3gw4_A Uncharacterized protein 96.4 0.048 1.6E-06 45.5 12.5 131 74-208 46-178 (203)
25 3ulq_A Response regulator aspa 96.4 0.25 8.7E-06 46.2 18.9 109 99-208 106-215 (383)
26 3ro2_A PINS homolog, G-protein 96.4 0.071 2.4E-06 47.3 14.2 113 94-207 41-173 (338)
27 4gco_A Protein STI-1; structur 96.3 0.018 6.3E-07 46.2 9.0 104 90-207 7-111 (126)
28 3uq3_A Heat shock protein STI1 96.3 0.43 1.5E-05 40.8 19.4 180 16-206 3-202 (258)
29 4ga2_A E3 SUMO-protein ligase 96.3 0.007 2.4E-07 50.0 6.6 94 101-207 2-95 (150)
30 3u3w_A Transcriptional activat 96.3 0.11 3.9E-06 47.0 15.2 108 100-208 79-186 (293)
31 4gcn_A Protein STI-1; structur 96.3 0.032 1.1E-06 44.6 10.1 106 94-206 6-112 (127)
32 2xev_A YBGF; tetratricopeptide 96.2 0.048 1.6E-06 42.2 10.7 103 99-208 5-107 (129)
33 3edt_B KLC 2, kinesin light ch 96.2 0.13 4.4E-06 44.6 14.4 111 94-206 125-281 (283)
34 2qfc_A PLCR protein; TPR, HTH, 96.1 0.14 4.9E-06 46.4 15.1 116 91-207 110-226 (293)
35 4a1s_A PINS, partner of inscut 96.1 0.076 2.6E-06 49.7 13.4 111 94-207 46-156 (411)
36 1qqe_A Vesicular transport pro 95.9 0.15 5.2E-06 46.4 14.1 112 95-207 76-188 (292)
37 3upv_A Heat shock protein STI1 95.8 0.085 2.9E-06 41.0 10.6 100 95-207 3-102 (126)
38 2vyi_A SGTA protein; chaperone 95.8 0.18 6.1E-06 38.1 12.1 103 92-207 8-110 (131)
39 1elw_A TPR1-domain of HOP; HOP 95.7 0.087 3E-06 39.2 9.9 99 95-206 3-101 (118)
40 2ifu_A Gamma-SNAP; membrane fu 95.7 0.093 3.2E-06 48.2 12.0 113 94-208 74-186 (307)
41 3q15_A PSP28, response regulat 95.7 0.06 2E-06 50.7 10.8 115 92-207 137-252 (378)
42 3nf1_A KLC 1, kinesin light ch 95.7 0.032 1.1E-06 49.6 8.4 113 94-207 25-141 (311)
43 3ulq_A Response regulator aspa 95.7 0.14 4.9E-06 48.0 13.3 115 92-207 139-254 (383)
44 3edt_B KLC 2, kinesin light ch 95.7 0.08 2.7E-06 46.0 10.7 112 94-207 83-199 (283)
45 2ho1_A Type 4 fimbrial biogene 95.6 0.61 2.1E-05 40.1 16.3 167 18-206 37-204 (252)
46 3n71_A Histone lysine methyltr 95.5 0.33 1.1E-05 48.8 15.9 133 71-206 326-464 (490)
47 3rkv_A Putative peptidylprolyl 95.5 0.13 4.6E-06 42.0 10.9 107 95-207 10-127 (162)
48 4ga2_A E3 SUMO-protein ligase 95.5 0.018 6E-07 47.5 5.4 102 91-205 26-128 (150)
49 2lni_A Stress-induced-phosphop 95.5 0.17 5.9E-06 38.6 10.9 99 96-207 16-114 (133)
50 3mkr_A Coatomer subunit epsilo 95.4 0.21 7.3E-06 45.8 13.2 96 96-207 101-196 (291)
51 3sz7_A HSC70 cochaperone (SGT) 95.4 0.074 2.5E-06 43.7 9.1 102 94-208 9-110 (164)
52 1a17_A Serine/threonine protei 95.4 0.24 8.1E-06 39.5 11.9 101 94-207 11-111 (166)
53 3gyz_A Chaperone protein IPGC; 95.2 0.1 3.4E-06 43.7 9.3 122 73-207 8-134 (151)
54 3mv2_B Coatomer subunit epsilo 95.2 0.047 1.6E-06 51.9 8.1 102 100-207 104-208 (310)
55 3q15_A PSP28, response regulat 95.2 0.51 1.7E-05 44.1 15.3 113 95-208 100-213 (378)
56 1na0_A Designed protein CTPR3; 95.2 0.3 1E-05 36.4 11.4 98 96-206 9-106 (125)
57 3vtx_A MAMA; tetratricopeptide 95.1 0.15 5.1E-06 42.1 10.2 100 95-207 4-103 (184)
58 2vq2_A PILW, putative fimbrial 95.1 1.2 4.1E-05 37.0 16.7 168 18-207 8-177 (225)
59 2fbn_A 70 kDa peptidylprolyl i 95.1 0.25 8.6E-06 41.7 11.8 107 95-207 37-152 (198)
60 1qqe_A Vesicular transport pro 95.1 0.25 8.6E-06 44.9 12.4 111 97-208 38-149 (292)
61 3uq3_A Heat shock protein STI1 95.1 0.065 2.2E-06 46.1 8.0 104 95-206 4-108 (258)
62 4i17_A Hypothetical protein; T 95.1 0.34 1.2E-05 41.5 12.7 102 98-206 44-146 (228)
63 3as5_A MAMA; tetratricopeptide 95.0 0.29 9.8E-06 39.4 11.5 100 95-207 7-106 (186)
64 2ifu_A Gamma-SNAP; membrane fu 95.0 0.25 8.6E-06 45.2 12.2 112 95-208 35-146 (307)
65 3qky_A Outer membrane assembly 95.0 0.24 8.2E-06 43.7 11.6 107 95-208 14-128 (261)
66 3q49_B STIP1 homology and U bo 94.7 0.13 4.5E-06 40.1 8.3 100 96-208 9-108 (137)
67 3as5_A MAMA; tetratricopeptide 94.6 1.4 4.7E-05 35.1 16.8 168 16-207 6-174 (186)
68 2xcb_A PCRH, regulatory protei 94.5 0.28 9.4E-06 39.3 10.0 102 94-208 16-117 (142)
69 4b4t_Q 26S proteasome regulato 94.5 0.057 1.9E-06 51.1 6.5 111 96-207 95-205 (434)
70 1ihg_A Cyclophilin 40; ppiase 94.4 0.29 1E-05 46.8 11.6 106 95-207 222-337 (370)
71 3qky_A Outer membrane assembly 94.4 0.26 9.1E-06 43.4 10.4 109 96-208 52-179 (261)
72 1hh8_A P67PHOX, NCF-2, neutrop 94.3 0.2 6.9E-06 42.2 9.2 104 96-206 37-150 (213)
73 4eqf_A PEX5-related protein; a 94.3 1.8 6.1E-05 39.6 16.3 108 96-207 133-243 (365)
74 2vgx_A Chaperone SYCD; alterna 94.3 0.4 1.4E-05 39.1 10.6 101 94-207 19-119 (148)
75 2xpi_A Anaphase-promoting comp 94.2 1.6 5.5E-05 42.7 16.7 105 97-207 476-580 (597)
76 3ieg_A DNAJ homolog subfamily 94.1 3.1 0.00011 37.0 21.2 100 99-207 237-336 (359)
77 2l6j_A TPR repeat-containing p 94.0 0.29 9.8E-06 36.4 8.6 89 96-191 4-92 (111)
78 2q7f_A YRRB protein; TPR, prot 94.0 0.81 2.8E-05 38.7 12.6 98 96-206 91-188 (243)
79 1hxi_A PEX5, peroxisome target 94.0 0.3 1E-05 38.4 9.0 94 100-206 21-114 (121)
80 3ieg_A DNAJ homolog subfamily 93.9 0.67 2.3E-05 41.5 12.2 108 97-207 189-302 (359)
81 1hh8_A P67PHOX, NCF-2, neutrop 93.8 0.41 1.4E-05 40.3 10.0 93 99-207 9-101 (213)
82 2fo7_A Synthetic consensus TPR 93.7 0.3 1E-05 36.7 8.3 96 98-206 3-98 (136)
83 2fo7_A Synthetic consensus TPR 93.7 0.47 1.6E-05 35.6 9.4 97 97-206 36-132 (136)
84 2e2e_A Formate-dependent nitri 93.6 0.6 2E-05 38.3 10.5 99 96-207 44-145 (177)
85 2ho1_A Type 4 fimbrial biogene 93.5 0.38 1.3E-05 41.4 9.6 101 96-207 71-171 (252)
86 1p5q_A FKBP52, FK506-binding p 93.4 0.31 1E-05 45.7 9.3 109 93-207 144-260 (336)
87 3k9i_A BH0479 protein; putativ 93.4 0.34 1.2E-05 37.3 8.1 90 108-207 2-91 (117)
88 1a17_A Serine/threonine protei 93.2 0.92 3.2E-05 35.9 10.9 101 96-207 47-147 (166)
89 2y4t_A DNAJ homolog subfamily 93.2 3.9 0.00013 38.2 16.8 108 96-206 211-324 (450)
90 1hz4_A MALT regulatory protein 93.2 0.8 2.7E-05 42.3 11.8 114 92-207 10-123 (373)
91 4i17_A Hypothetical protein; T 93.1 1.4 4.7E-05 37.6 12.4 73 95-167 75-147 (228)
92 3vtx_A MAMA; tetratricopeptide 92.9 0.92 3.1E-05 37.2 10.7 98 96-206 39-136 (184)
93 2kck_A TPR repeat; tetratricop 92.9 0.13 4.4E-06 38.0 4.8 98 99-207 9-107 (112)
94 2yhc_A BAMD, UPF0169 lipoprote 92.9 1.6 5.6E-05 37.5 12.7 108 97-208 42-178 (225)
95 3u4t_A TPR repeat-containing p 92.8 0.3 1E-05 42.5 7.9 99 99-207 6-104 (272)
96 3hym_B Cell division cycle pro 92.8 0.45 1.5E-05 42.3 9.1 105 96-206 193-299 (330)
97 1xnf_A Lipoprotein NLPI; TPR, 92.8 0.41 1.4E-05 41.5 8.6 102 93-207 40-141 (275)
98 2q7f_A YRRB protein; TPR, prot 92.4 1.8 6.3E-05 36.5 12.2 99 96-207 57-155 (243)
99 2vq2_A PILW, putative fimbrial 92.4 0.61 2.1E-05 38.8 9.0 97 96-205 8-105 (225)
100 2y4t_A DNAJ homolog subfamily 92.3 6.5 0.00022 36.6 17.1 99 100-207 261-359 (450)
101 1hz4_A MALT regulatory protein 92.2 0.69 2.4E-05 42.7 9.9 110 95-207 92-204 (373)
102 2xpi_A Anaphase-promoting comp 92.0 5.3 0.00018 38.9 16.6 99 100-205 445-544 (597)
103 3hym_B Cell division cycle pro 91.8 6.3 0.00021 34.6 16.9 100 100-206 163-265 (330)
104 2gw1_A Mitochondrial precursor 91.8 0.4 1.4E-05 45.8 7.9 100 94-207 4-103 (514)
105 2pl2_A Hypothetical conserved 91.7 5.7 0.00019 33.9 16.0 98 96-207 73-181 (217)
106 1fch_A Peroxisomal targeting s 91.7 0.93 3.2E-05 41.2 10.1 100 96-208 217-316 (368)
107 3urz_A Uncharacterized protein 91.7 1.3 4.4E-05 37.9 10.4 96 99-207 7-118 (208)
108 4abn_A Tetratricopeptide repea 91.7 1.1 3.8E-05 43.9 11.2 97 96-206 137-250 (474)
109 4eqf_A PEX5-related protein; a 91.6 0.91 3.1E-05 41.6 9.9 100 96-208 213-312 (365)
110 1kt0_A FKBP51, 51 kDa FK506-bi 91.5 0.67 2.3E-05 45.4 9.4 107 94-206 266-380 (457)
111 2gw1_A Mitochondrial precursor 91.4 0.7 2.4E-05 44.1 9.1 104 97-207 373-479 (514)
112 2pl2_A Hypothetical conserved 91.3 2.1 7.1E-05 36.8 11.5 97 98-207 7-114 (217)
113 4abn_A Tetratricopeptide repea 91.3 3.6 0.00012 40.2 14.5 100 94-207 100-209 (474)
114 3ma5_A Tetratricopeptide repea 91.2 0.46 1.6E-05 35.8 6.3 71 96-173 7-77 (100)
115 3u4t_A TPR repeat-containing p 91.2 0.68 2.3E-05 40.2 8.2 99 98-206 39-137 (272)
116 3cv0_A Peroxisome targeting si 91.1 1 3.5E-05 39.8 9.5 99 96-207 172-270 (327)
117 2yhc_A BAMD, UPF0169 lipoprote 91.0 2 6.9E-05 37.0 11.1 104 98-208 6-127 (225)
118 2c2l_A CHIP, carboxy terminus 90.8 1.2 4E-05 40.3 9.7 99 97-208 5-103 (281)
119 4f3v_A ESX-1 secretion system 90.7 1.6 5.4E-05 40.7 10.6 101 93-205 99-199 (282)
120 1elr_A TPR2A-domain of HOP; HO 90.6 1.1 3.7E-05 33.7 7.9 73 96-168 38-110 (131)
121 4gyw_A UDP-N-acetylglucosamine 90.6 1.7 5.8E-05 45.6 11.9 98 96-206 9-106 (723)
122 3qww_A SET and MYND domain-con 90.4 1.8 6.3E-05 42.5 11.3 104 71-176 315-424 (433)
123 3cv0_A Peroxisome targeting si 90.3 0.71 2.4E-05 40.9 7.6 105 96-207 206-316 (327)
124 1p5q_A FKBP52, FK506-binding p 90.2 1.5 5.3E-05 40.8 10.2 101 93-206 193-294 (336)
125 4b4t_P 26S proteasome regulato 89.9 16 0.00053 35.8 18.3 92 115-206 115-206 (445)
126 3fp2_A TPR repeat-containing p 89.9 14 0.00047 35.2 18.4 95 98-205 312-406 (537)
127 2kat_A Uncharacterized protein 89.9 1.2 4E-05 33.8 7.6 67 96-169 19-85 (115)
128 3n71_A Histone lysine methyltr 89.8 0.92 3.1E-05 45.5 8.7 104 102-207 315-423 (490)
129 3fp2_A TPR repeat-containing p 89.8 1.4 4.6E-05 42.5 9.7 107 86-206 233-339 (537)
130 3mv2_B Coatomer subunit epsilo 89.8 2.4 8E-05 40.1 11.0 155 95-267 135-299 (310)
131 2vsy_A XCC0866; transferase, g 89.8 1.9 6.6E-05 42.7 11.0 99 96-207 23-121 (568)
132 3qwp_A SET and MYND domain-con 89.5 3.4 0.00012 40.4 12.4 106 69-176 302-413 (429)
133 1xnf_A Lipoprotein NLPI; TPR, 89.5 0.26 8.8E-06 42.9 3.9 97 102-207 11-107 (275)
134 2xev_A YBGF; tetratricopeptide 89.0 1.4 4.8E-05 33.5 7.5 69 97-169 40-108 (129)
135 1na3_A Designed protein CTPR2; 88.8 2.7 9.1E-05 29.6 8.6 71 131-207 3-73 (91)
136 1wi9_A Protein C20ORF116 homol 88.8 0.67 2.3E-05 34.4 5.0 39 314-352 18-56 (72)
137 3qou_A Protein YBBN; thioredox 88.6 4.1 0.00014 36.7 11.5 97 97-206 118-214 (287)
138 1rz4_A Eukaryotic translation 88.6 3.7 0.00013 36.9 11.0 70 269-340 106-176 (226)
139 1fch_A Peroxisomal targeting s 88.5 0.85 2.9E-05 41.5 6.8 104 96-206 251-359 (368)
140 3upv_A Heat shock protein STI1 88.4 4.4 0.00015 30.8 10.1 66 136-207 3-68 (126)
141 3txn_A 26S proteasome regulato 88.4 6.1 0.00021 38.5 13.1 110 98-207 21-169 (394)
142 3sz7_A HSC70 cochaperone (SGT) 88.3 2.3 7.9E-05 34.3 8.8 70 96-172 45-114 (164)
143 2xcb_A PCRH, regulatory protei 88.1 3.3 0.00011 32.7 9.5 67 135-207 16-82 (142)
144 2vgx_A Chaperone SYCD; alterna 88.0 3 0.0001 33.7 9.2 67 135-207 19-85 (148)
145 1qgp_A Protein (double strande 87.9 0.97 3.3E-05 33.7 5.6 46 305-350 16-64 (77)
146 4gyw_A UDP-N-acetylglucosamine 87.5 3.9 0.00013 42.9 11.9 167 17-207 8-175 (723)
147 3urz_A Uncharacterized protein 87.4 3.4 0.00012 35.1 9.7 67 96-169 54-120 (208)
148 1w3b_A UDP-N-acetylglucosamine 87.4 4.6 0.00016 37.2 11.3 93 101-206 4-96 (388)
149 1elw_A TPR1-domain of HOP; HOP 87.2 5.2 0.00018 29.0 9.6 66 136-207 3-68 (118)
150 3qww_A SET and MYND domain-con 87.1 3.1 0.00011 40.9 10.3 98 107-207 309-412 (433)
151 4gco_A Protein STI-1; structur 87.0 1.7 5.9E-05 34.2 7.0 75 96-179 47-121 (126)
152 4b4t_T 26S proteasome regulato 86.8 2.6 8.9E-05 39.0 9.0 186 145-340 12-223 (274)
153 4g1t_A Interferon-induced prot 86.5 2.5 8.5E-05 40.0 9.0 110 96-206 51-167 (472)
154 2v5f_A Prolyl 4-hydroxylase su 85.9 3.4 0.00012 31.4 8.0 72 97-169 6-78 (104)
155 2if4_A ATFKBP42; FKBP-like, al 85.8 0.7 2.4E-05 43.3 4.6 106 95-206 178-293 (338)
156 3qwp_A SET and MYND domain-con 85.7 9.5 0.00032 37.2 13.0 101 106-208 297-402 (429)
157 2r5s_A Uncharacterized protein 85.5 13 0.00045 30.1 13.9 63 99-168 9-71 (176)
158 1xn7_A Hypothetical protein YH 85.3 1.2 4.3E-05 33.3 4.9 37 312-348 11-47 (78)
159 1kt0_A FKBP51, 51 kDa FK506-bi 85.2 3.8 0.00013 39.9 9.8 101 92-205 313-414 (457)
160 3rkv_A Putative peptidylprolyl 85.1 5.3 0.00018 32.0 9.3 72 135-206 9-92 (162)
161 2kck_A TPR repeat; tetratricop 85.0 2.5 8.4E-05 30.6 6.6 67 97-168 41-108 (112)
162 1na3_A Designed protein CTPR2; 85.0 7.8 0.00027 27.0 9.2 67 95-168 8-74 (91)
163 1w3b_A UDP-N-acetylglucosamine 84.8 7.2 0.00025 35.8 11.2 96 98-206 171-266 (388)
164 2dba_A Smooth muscle cell asso 84.6 6.2 0.00021 30.2 9.2 71 134-207 25-95 (148)
165 4gcn_A Protein STI-1; structur 84.6 3.7 0.00013 32.1 7.9 70 97-167 43-113 (127)
166 2vsy_A XCC0866; transferase, g 84.1 3.9 0.00013 40.5 9.5 99 96-207 57-158 (568)
167 3ma5_A Tetratricopeptide repea 83.9 2.9 9.9E-05 31.2 6.7 65 137-207 7-71 (100)
168 2k02_A Ferrous iron transport 83.9 1.4 4.7E-05 33.9 4.7 38 311-348 10-47 (87)
169 2fbn_A 70 kDa peptidylprolyl i 83.5 5.5 0.00019 33.1 8.9 72 136-207 37-118 (198)
170 3qou_A Protein YBBN; thioredox 83.4 11 0.00039 33.7 11.6 99 96-207 151-249 (287)
171 2kc7_A BFR218_protein; tetratr 83.2 4.9 0.00017 29.0 7.6 63 100-169 4-67 (99)
172 3k9i_A BH0479 protein; putativ 83.2 3.9 0.00013 31.0 7.3 70 93-169 24-93 (117)
173 2r5s_A Uncharacterized protein 83.0 2.5 8.5E-05 34.7 6.5 100 92-205 36-136 (176)
174 2vyi_A SGTA protein; chaperone 82.9 11 0.00038 27.6 9.7 69 133-207 8-76 (131)
175 2lni_A Stress-induced-phosphop 82.9 10 0.00035 28.1 9.6 71 131-207 10-80 (133)
176 4g1t_A Interferon-induced prot 82.8 3.7 0.00013 38.8 8.4 104 99-206 337-459 (472)
177 1qbj_A Protein (double-strande 81.4 2.7 9.4E-05 31.6 5.5 44 305-348 12-58 (81)
178 3ffl_A Anaphase-promoting comp 81.4 3.3 0.00011 35.7 6.6 71 137-207 20-93 (167)
179 1ihg_A Cyclophilin 40; ppiase 81.0 4.7 0.00016 38.2 8.4 96 91-199 268-363 (370)
180 1ouv_A Conserved hypothetical 80.9 3.9 0.00013 35.7 7.3 93 96-205 6-106 (273)
181 1na0_A Designed protein CTPR3; 80.4 10 0.00035 27.6 8.6 69 132-206 4-72 (125)
182 3q49_B STIP1 homology and U bo 80.0 10 0.00034 28.8 8.7 66 136-207 8-73 (137)
183 2kc7_A BFR218_protein; tetratr 79.9 9.5 0.00033 27.4 8.2 62 141-207 4-65 (99)
184 1wao_1 Serine/threonine protei 78.8 0.7 2.4E-05 45.7 1.7 63 137-205 40-102 (477)
185 3mkr_A Coatomer subunit epsilo 78.5 6 0.0002 35.8 7.9 95 96-206 65-159 (291)
186 2l6j_A TPR repeat-containing p 77.7 7.8 0.00027 28.1 7.1 65 137-207 4-68 (111)
187 2kat_A Uncharacterized protein 77.4 6.3 0.00022 29.5 6.7 64 138-207 20-83 (115)
188 2hr2_A Hypothetical protein; a 77.3 20 0.00069 30.2 10.3 116 93-208 8-133 (159)
189 1ouv_A Conserved hypothetical 76.6 6.7 0.00023 34.1 7.5 92 97-205 39-142 (273)
190 4f3v_A ESX-1 secretion system 76.2 43 0.0015 30.8 13.2 102 98-207 137-238 (282)
191 2v5f_A Prolyl 4-hydroxylase su 75.6 6 0.0002 30.0 6.0 69 138-206 6-75 (104)
192 2heo_A Z-DNA binding protein 1 75.5 3.6 0.00012 29.4 4.4 34 316-349 24-57 (67)
193 2pzi_A Probable serine/threoni 75.3 13 0.00046 38.0 10.4 93 107-207 402-497 (681)
194 1wao_1 Serine/threonine protei 75.2 4.4 0.00015 39.9 6.4 95 96-201 40-134 (477)
195 3gyz_A Chaperone protein IPGC; 73.7 17 0.0006 29.6 8.9 67 135-207 34-100 (151)
196 2h6f_A Protein farnesyltransfe 72.5 16 0.00055 34.8 9.5 103 91-206 92-195 (382)
197 2ond_A Cleavage stimulation fa 72.0 17 0.00058 32.5 9.2 83 113-206 81-163 (308)
198 1hxi_A PEX5, peroxisome target 71.7 12 0.0004 28.9 7.0 64 137-206 17-80 (121)
199 2jt1_A PEFI protein; solution 71.0 7.2 0.00024 29.0 5.2 32 317-348 24-55 (77)
200 1ug3_A EIF4GI, eukaryotic prot 69.8 73 0.0025 29.8 14.6 126 90-249 6-131 (339)
201 4b8x_A SCO5413, possible MARR- 69.3 18 0.00061 29.3 7.9 63 278-352 22-86 (147)
202 2yin_A DOCK2, dedicator of cyt 68.3 12 0.00041 36.9 7.6 114 91-208 30-144 (436)
203 2if4_A ATFKBP42; FKBP-like, al 67.8 5.4 0.00018 37.1 4.9 97 97-206 231-328 (338)
204 2ond_A Cleavage stimulation fa 66.0 17 0.00058 32.6 7.8 100 96-207 99-199 (308)
205 2cfx_A HTH-type transcriptiona 65.6 13 0.00043 30.2 6.2 36 314-349 16-51 (144)
206 2cg4_A Regulatory protein ASNC 63.7 12 0.0004 30.6 5.7 35 315-349 20-54 (152)
207 2htj_A P fimbrial regulatory p 63.6 13 0.00043 27.1 5.3 33 316-348 13-45 (81)
208 2h6f_A Protein farnesyltransfe 63.1 16 0.00056 34.7 7.4 99 96-207 131-230 (382)
209 2p5v_A Transcriptional regulat 62.6 15 0.0005 30.4 6.1 35 315-349 22-56 (162)
210 3ffl_A Anaphase-promoting comp 62.2 13 0.00046 31.8 5.8 45 95-147 121-165 (167)
211 2dbb_A Putative HTH-type trans 62.0 14 0.00048 30.1 5.9 35 315-349 21-55 (151)
212 1xd7_A YWNA; structural genomi 61.6 12 0.00043 30.6 5.5 43 306-349 13-55 (145)
213 2pzi_A Probable serine/threoni 61.2 9.4 0.00032 39.2 5.6 97 96-206 433-529 (681)
214 2y75_A HTH-type transcriptiona 59.6 18 0.00061 28.7 5.9 34 316-349 25-58 (129)
215 2e2e_A Formate-dependent nitri 59.5 46 0.0016 26.4 8.7 86 108-206 22-110 (177)
216 2w25_A Probable transcriptiona 57.4 21 0.00071 29.0 6.1 34 315-348 19-52 (150)
217 2ooe_A Cleavage stimulation fa 57.2 48 0.0016 32.1 9.8 100 96-206 272-385 (530)
218 4fhn_B Nucleoporin NUP120; pro 56.7 20 0.00068 39.4 7.5 121 98-231 844-980 (1139)
219 2ia0_A Putative HTH-type trans 56.3 21 0.00073 30.0 6.1 34 315-348 29-62 (171)
220 2e1c_A Putative HTH-type trans 56.0 15 0.0005 31.1 5.1 36 314-349 38-73 (171)
221 3rjv_A Putative SEL1 repeat pr 55.6 22 0.00074 30.1 6.2 92 96-205 18-117 (212)
222 1ucr_A Protein DSVD; dissimila 55.5 13 0.00043 27.9 3.8 36 313-348 17-53 (78)
223 1sfx_A Conserved hypothetical 55.4 23 0.00079 26.2 5.7 36 315-350 32-67 (109)
224 2fbh_A Transcriptional regulat 55.1 48 0.0016 25.8 7.9 39 313-351 48-86 (146)
225 3g3z_A NMB1585, transcriptiona 54.8 23 0.00077 28.1 5.8 37 315-351 43-79 (145)
226 3i4p_A Transcriptional regulat 54.3 19 0.00065 29.9 5.5 37 312-348 12-48 (162)
227 2cyy_A Putative HTH-type trans 53.9 16 0.00054 29.8 4.8 34 315-348 19-52 (151)
228 3s2w_A Transcriptional regulat 52.7 35 0.0012 27.5 6.8 37 315-351 62-98 (159)
229 1xi4_A Clathrin heavy chain; a 51.7 1E+02 0.0036 35.2 12.1 51 101-166 1200-1250(1630)
230 3t8r_A Staphylococcus aureus C 51.6 26 0.00087 28.7 5.7 44 306-349 15-60 (143)
231 1i1g_A Transcriptional regulat 51.2 19 0.00064 28.8 4.8 35 315-349 16-50 (141)
232 1lj9_A Transcriptional regulat 51.1 50 0.0017 25.8 7.4 36 316-351 42-77 (144)
233 3rjv_A Putative SEL1 repeat pr 51.1 42 0.0014 28.2 7.3 99 96-206 85-197 (212)
234 4g26_A Pentatricopeptide repea 50.4 1.9E+02 0.0065 28.3 13.8 170 20-206 28-204 (501)
235 3lwf_A LIN1550 protein, putati 50.1 32 0.0011 28.9 6.2 33 317-349 44-76 (159)
236 2pn6_A ST1022, 150AA long hypo 49.5 28 0.00095 28.1 5.7 36 314-349 14-49 (150)
237 1oyi_A Double-stranded RNA-bin 48.8 15 0.00051 27.8 3.4 32 318-349 31-62 (82)
238 3hsr_A HTH-type transcriptiona 48.4 40 0.0014 26.5 6.4 47 305-351 38-84 (140)
239 2k9l_A RNA polymerase sigma fa 47.4 17 0.00058 26.6 3.6 40 302-341 32-72 (76)
240 3bpv_A Transcriptional regulat 47.1 36 0.0012 26.4 5.8 36 315-350 41-76 (138)
241 3bj6_A Transcriptional regulat 46.7 43 0.0015 26.5 6.3 38 314-351 51-88 (152)
242 2v79_A DNA replication protein 46.0 13 0.00045 30.4 3.1 34 315-348 49-82 (135)
243 2gxg_A 146AA long hypothetical 45.8 54 0.0018 25.6 6.8 37 315-351 48-84 (146)
244 3bdd_A Regulatory protein MARR 45.5 44 0.0015 25.9 6.2 37 315-351 43-79 (142)
245 2ooe_A Cleavage stimulation fa 45.5 67 0.0023 31.0 8.6 100 96-207 321-421 (530)
246 2c2l_A CHIP, carboxy terminus 45.2 55 0.0019 28.9 7.4 64 137-206 4-67 (281)
247 2nnn_A Probable transcriptiona 45.0 36 0.0012 26.4 5.5 35 316-350 51-85 (140)
248 1xi4_A Clathrin heavy chain; a 44.6 3.5E+02 0.012 31.1 14.8 100 67-166 1326-1445(1630)
249 3oop_A LIN2960 protein; protei 44.5 36 0.0012 26.7 5.5 36 316-351 50-85 (143)
250 2xm6_A Protein corresponding t 44.3 56 0.0019 31.2 7.8 60 97-165 40-107 (490)
251 1r7j_A Conserved hypothetical 43.8 52 0.0018 24.9 6.0 44 303-349 9-52 (95)
252 3k69_A Putative transcription 43.7 33 0.0011 28.8 5.2 34 316-349 27-60 (162)
253 1ub9_A Hypothetical protein PH 43.2 48 0.0016 24.2 5.7 36 316-351 29-64 (100)
254 1jgs_A Multiple antibiotic res 43.1 45 0.0015 25.8 5.8 38 315-352 46-83 (138)
255 2d1h_A ST1889, 109AA long hypo 43.1 47 0.0016 24.4 5.7 36 315-350 34-69 (109)
256 2fbi_A Probable transcriptiona 43.0 38 0.0013 26.3 5.4 36 315-350 48-83 (142)
257 1s3j_A YUSO protein; structura 43.0 42 0.0014 26.6 5.7 37 315-351 49-85 (155)
258 2hr3_A Probable transcriptiona 42.8 51 0.0017 25.8 6.2 37 315-351 48-84 (147)
259 1ylf_A RRF2 family protein; st 42.7 26 0.00089 28.7 4.4 34 316-349 29-62 (149)
260 3k0l_A Repressor protein; heli 42.6 43 0.0015 27.0 5.8 47 306-352 49-95 (162)
261 3tgn_A ADC operon repressor AD 42.4 46 0.0016 26.0 5.9 38 313-351 48-85 (146)
262 3cdh_A Transcriptional regulat 42.2 59 0.002 25.8 6.6 45 306-350 46-90 (155)
263 3ech_A MEXR, multidrug resista 41.8 30 0.001 27.2 4.6 37 315-351 49-85 (142)
264 1pc2_A Mitochondria fission pr 41.5 1.5E+02 0.0052 24.6 9.4 69 96-169 32-103 (152)
265 2xm6_A Protein corresponding t 41.3 66 0.0023 30.6 7.8 92 97-205 112-215 (490)
266 3cuo_A Uncharacterized HTH-typ 41.2 71 0.0024 23.2 6.4 35 316-350 37-71 (99)
267 2qww_A Transcriptional regulat 41.0 45 0.0015 26.5 5.6 35 315-349 53-87 (154)
268 3eco_A MEPR; mutlidrug efflux 41.0 52 0.0018 25.6 5.9 36 316-351 46-81 (139)
269 3nrv_A Putative transcriptiona 40.8 51 0.0017 25.9 5.9 44 307-350 44-87 (148)
270 2pft_A Exocytosis protein; hel 40.8 33 0.0011 34.7 5.7 65 278-342 497-567 (571)
271 2a61_A Transcriptional regulat 40.5 46 0.0016 26.0 5.5 36 315-350 45-80 (145)
272 2kko_A Possible transcriptiona 40.3 42 0.0014 25.7 5.1 35 316-350 37-71 (108)
273 2pex_A Transcriptional regulat 39.9 60 0.0021 25.7 6.2 37 315-351 59-95 (153)
274 3bqo_A Telomeric repeat-bindin 39.9 1.5E+02 0.0053 26.0 9.0 89 35-123 42-144 (211)
275 1z6r_A MLC protein; transcript 39.1 43 0.0015 31.8 6.0 46 303-348 13-61 (406)
276 2rdp_A Putative transcriptiona 39.1 55 0.0019 25.7 5.8 37 315-351 54-90 (150)
277 3bja_A Transcriptional regulat 38.9 39 0.0013 26.1 4.8 36 315-350 45-80 (139)
278 2pi2_A Replication protein A 3 38.9 6.4 0.00022 36.1 0.0 37 316-352 223-260 (270)
279 2oz6_A Virulence factor regula 38.7 29 0.00099 28.8 4.2 32 317-348 164-195 (207)
280 3bro_A Transcriptional regulat 38.1 66 0.0023 24.8 6.1 34 317-350 50-83 (141)
281 1y0u_A Arsenical resistance op 38.0 43 0.0015 24.8 4.7 34 316-349 42-75 (96)
282 2nyx_A Probable transcriptiona 37.5 57 0.0019 26.6 5.8 38 315-352 57-94 (168)
283 2fxa_A Protease production reg 36.9 58 0.002 27.9 6.0 37 316-352 61-97 (207)
284 3dv8_A Transcriptional regulat 36.5 34 0.0012 28.7 4.3 33 316-348 168-200 (220)
285 4fx0_A Probable transcriptiona 36.2 89 0.003 25.1 6.7 58 278-347 20-82 (148)
286 4hbl_A Transcriptional regulat 35.9 54 0.0018 26.0 5.3 36 315-350 53-88 (149)
287 1ku9_A Hypothetical protein MJ 35.3 1.4E+02 0.0048 23.0 7.7 35 316-350 40-74 (152)
288 4ev0_A Transcription regulator 35.2 35 0.0012 28.5 4.2 34 315-348 161-194 (216)
289 3cjn_A Transcriptional regulat 35.1 69 0.0024 25.6 5.9 37 315-351 64-100 (162)
290 2zcw_A TTHA1359, transcription 35.1 36 0.0012 28.3 4.2 33 316-348 145-177 (202)
291 2b1e_A Exocyst complex compone 35.1 30 0.001 35.0 4.3 65 278-342 495-563 (564)
292 2hzt_A Putative HTH-type trans 35.1 62 0.0021 24.6 5.3 38 315-352 25-63 (107)
293 3ryp_A Catabolite gene activat 35.1 36 0.0012 28.3 4.2 32 317-348 167-198 (210)
294 3i5p_A Nucleoporin NUP170; hel 34.9 22 0.00075 35.9 3.2 49 177-231 217-265 (525)
295 2bv6_A MGRA, HTH-type transcri 34.8 55 0.0019 25.5 5.1 37 315-351 49-85 (142)
296 3jth_A Transcription activator 34.8 63 0.0022 23.8 5.2 35 316-350 35-69 (98)
297 2p7v_B Sigma-70, RNA polymeras 34.8 49 0.0017 22.8 4.3 29 315-343 23-51 (68)
298 2zu6_B Programmed cell death p 34.7 1.9E+02 0.0064 26.8 9.5 54 89-151 160-213 (307)
299 3e97_A Transcriptional regulat 34.6 37 0.0013 28.8 4.3 34 315-348 173-206 (231)
300 3d0s_A Transcriptional regulat 34.6 37 0.0013 28.7 4.3 33 316-348 176-208 (227)
301 2fa5_A Transcriptional regulat 34.6 68 0.0023 25.6 5.8 36 315-350 61-96 (162)
302 1eij_A Hypothetical protein MT 34.4 20 0.00069 26.9 2.1 33 320-352 22-57 (80)
303 3iwz_A CAP-like, catabolite ac 34.4 37 0.0013 28.7 4.2 32 317-348 187-218 (230)
304 2eth_A Transcriptional regulat 34.3 79 0.0027 25.1 6.1 36 316-351 57-92 (154)
305 2gau_A Transcriptional regulat 34.3 37 0.0013 28.8 4.3 34 315-348 178-211 (232)
306 1r1u_A CZRA, repressor protein 33.9 54 0.0019 24.8 4.7 34 316-349 38-71 (106)
307 1uly_A Hypothetical protein PH 33.8 86 0.0029 26.8 6.5 35 316-350 32-66 (192)
308 3e6m_A MARR family transcripti 33.7 66 0.0023 25.8 5.5 37 315-351 65-101 (161)
309 3kp7_A Transcriptional regulat 33.6 48 0.0016 26.3 4.6 36 314-349 48-83 (151)
310 2x4h_A Hypothetical protein SS 33.4 69 0.0024 25.1 5.5 35 314-348 28-62 (139)
311 3mkq_A Coatomer beta'-subunit; 33.4 1.6E+02 0.0055 29.5 9.6 83 106-204 662-750 (814)
312 2oqg_A Possible transcriptiona 32.7 54 0.0018 24.7 4.6 34 316-349 33-66 (114)
313 2fmy_A COOA, carbon monoxide o 32.7 42 0.0014 28.3 4.3 34 315-348 165-198 (220)
314 2vn2_A DNAD, chromosome replic 32.6 36 0.0012 27.1 3.6 32 318-349 52-83 (128)
315 3la7_A Global nitrogen regulat 32.5 42 0.0014 29.0 4.3 33 316-348 192-224 (243)
316 3b02_A Transcriptional regulat 32.5 34 0.0012 28.4 3.6 32 317-348 139-170 (195)
317 1u2w_A CADC repressor, cadmium 32.4 68 0.0023 25.0 5.2 34 316-349 55-88 (122)
318 2wm9_A Dedicator of cytokinesi 32.3 3.1E+02 0.01 26.5 10.9 111 95-207 10-138 (428)
319 1b89_A Protein (clathrin heavy 32.0 19 0.00066 35.6 2.2 79 99-204 97-175 (449)
320 1ft9_A Carbon monoxide oxidati 31.9 41 0.0014 28.4 4.1 33 316-348 162-194 (222)
321 1tc3_C Protein (TC3 transposas 31.8 56 0.0019 20.0 3.9 31 315-345 19-49 (51)
322 2qvo_A Uncharacterized protein 31.6 54 0.0018 24.2 4.3 32 318-349 31-62 (95)
323 1klx_A Cysteine rich protein B 31.4 82 0.0028 24.6 5.6 59 139-205 59-125 (138)
324 1zu2_A Mitochondrial import re 31.3 1.3E+02 0.0044 25.1 7.0 49 153-207 62-121 (158)
325 1ldd_A APC2WHB, anaphase promo 31.2 82 0.0028 23.1 5.0 20 330-349 46-65 (74)
326 1q1h_A TFE, transcription fact 31.0 51 0.0017 25.0 4.1 34 317-350 33-66 (110)
327 1z7u_A Hypothetical protein EF 31.0 74 0.0025 24.3 5.1 37 316-352 34-71 (112)
328 1on2_A Transcriptional regulat 30.9 59 0.002 25.6 4.7 34 316-349 21-54 (142)
329 2pg4_A Uncharacterized protein 30.8 73 0.0025 23.4 4.9 32 317-348 30-62 (95)
330 1zyb_A Transcription regulator 30.7 43 0.0015 28.7 4.1 33 316-348 185-217 (232)
331 2fh0_A Hypothetical 16.0 kDa p 30.6 22 0.00075 26.8 1.7 21 332-352 35-55 (81)
332 1tbx_A ORF F-93, hypothetical 30.4 95 0.0033 22.8 5.6 36 315-350 20-59 (99)
333 2z99_A Putative uncharacterize 30.3 55 0.0019 29.2 4.7 40 301-343 17-56 (219)
334 3deu_A Transcriptional regulat 30.3 74 0.0025 25.9 5.3 37 315-351 66-102 (166)
335 1t6s_A Conserved hypothetical 30.1 60 0.0021 27.4 4.7 40 301-343 9-50 (162)
336 1xmk_A Double-stranded RNA-spe 30.1 81 0.0028 23.3 4.9 33 316-348 24-57 (79)
337 3t5v_A Nuclear mRNA export pro 29.2 55 0.0019 30.7 4.7 39 301-339 204-247 (316)
338 1nd9_A Translation initiation 29.2 41 0.0014 21.7 2.8 25 317-341 2-26 (49)
339 3df8_A Possible HXLR family tr 29.1 64 0.0022 24.9 4.4 35 318-352 43-78 (111)
340 1z91_A Organic hydroperoxide r 29.0 58 0.002 25.5 4.3 36 316-351 53-88 (147)
341 3tqn_A Transcriptional regulat 29.0 1.4E+02 0.0047 23.0 6.4 37 314-350 29-66 (113)
342 3e6c_C CPRK, cyclic nucleotide 28.9 52 0.0018 28.4 4.3 34 315-348 175-208 (250)
343 3f3x_A Transcriptional regulat 28.9 92 0.0031 24.3 5.5 33 319-351 52-84 (144)
344 1ku3_A Sigma factor SIGA; heli 28.8 54 0.0019 22.9 3.7 27 316-342 29-55 (73)
345 3dkw_A DNR protein; CRP-FNR, H 28.6 1.2E+02 0.0041 25.3 6.6 34 315-348 176-209 (227)
346 2k9m_A RNA polymerase sigma fa 28.4 47 0.0016 26.9 3.6 28 314-341 36-63 (130)
347 3pqk_A Biofilm growth-associat 28.4 72 0.0025 23.7 4.6 35 316-350 35-69 (102)
348 1klx_A Cysteine rich protein B 28.2 88 0.003 24.4 5.3 54 143-204 31-88 (138)
349 1r1t_A Transcriptional repress 27.9 1.2E+02 0.0043 23.6 6.1 34 316-349 58-91 (122)
350 3kcc_A Catabolite gene activat 27.3 55 0.0019 28.6 4.2 32 317-348 217-248 (260)
351 2hr2_A Hypothetical protein; a 27.1 2.7E+02 0.0092 23.1 9.5 74 134-207 8-87 (159)
352 2f2e_A PA1607; transcription f 27.1 1.2E+02 0.004 24.6 5.9 38 315-352 35-72 (146)
353 2qlz_A Transcription factor PF 27.1 84 0.0029 28.0 5.4 41 308-348 169-209 (232)
354 4h7y_A Dual specificity protei 27.0 2.8E+02 0.0097 23.3 8.6 120 25-168 3-125 (161)
355 3r0a_A Putative transcriptiona 26.8 1E+02 0.0034 24.1 5.3 32 318-349 43-74 (123)
356 2frh_A SARA, staphylococcal ac 26.8 61 0.0021 25.2 4.0 34 316-349 52-85 (127)
357 2ff4_A Probable regulatory pro 26.5 1.3E+02 0.0045 28.4 7.0 80 90-176 165-248 (388)
358 3nqo_A MARR-family transcripti 26.4 1.2E+02 0.004 25.3 6.1 38 315-352 55-92 (189)
359 2jpc_A SSRB; DNA binding prote 26.2 85 0.0029 20.7 4.2 30 314-343 10-39 (61)
360 3boq_A Transcriptional regulat 26.2 64 0.0022 25.7 4.1 38 313-350 58-95 (160)
361 2lkp_A Transcriptional regulat 26.1 91 0.0031 23.8 4.9 33 316-348 44-76 (119)
362 2bgc_A PRFA; bacterial infecti 26.0 57 0.0019 28.0 4.0 32 317-348 169-201 (238)
363 3fm5_A Transcriptional regulat 25.9 83 0.0028 24.8 4.7 35 316-350 53-87 (150)
364 2o8x_A Probable RNA polymerase 25.8 65 0.0022 21.8 3.6 29 314-342 28-56 (70)
365 3iuo_A ATP-dependent DNA helic 25.8 61 0.0021 25.7 3.8 35 314-348 29-64 (122)
366 4b4t_S RPN3, 26S proteasome re 25.7 5E+02 0.017 26.0 11.2 91 74-168 211-301 (523)
367 1sfu_A 34L protein; protein/Z- 25.2 97 0.0033 22.8 4.4 32 318-349 30-61 (75)
368 2lfc_A Fumarate reductase, fla 25.1 50 0.0017 27.3 3.3 27 315-341 93-119 (160)
369 2hoe_A N-acetylglucosamine kin 25.0 56 0.0019 30.8 4.0 47 301-348 15-64 (380)
370 3f2g_A Alkylmercury lyase; MER 24.9 60 0.0021 28.9 3.9 34 316-349 35-73 (220)
371 3bee_A Putative YFRE protein; 24.8 1.2E+02 0.0042 22.2 5.3 63 138-206 7-72 (93)
372 4e6h_A MRNA 3'-END-processing 24.8 5.7E+02 0.02 26.1 13.9 131 34-166 302-463 (679)
373 2b0l_A GTP-sensing transcripti 24.5 96 0.0033 23.7 4.6 36 314-349 39-75 (102)
374 2pjp_A Selenocysteine-specific 23.8 71 0.0024 25.0 3.8 33 317-349 20-52 (121)
375 1tty_A Sigma-A, RNA polymerase 23.8 92 0.0031 22.7 4.3 28 316-343 37-64 (87)
376 3neu_A LIN1836 protein; struct 23.7 1.8E+02 0.0061 22.8 6.3 37 314-350 33-70 (125)
377 3mkq_A Coatomer beta'-subunit; 23.0 1.6E+02 0.0055 29.5 7.3 25 97-121 682-706 (814)
378 3tjy_A Effector protein hopab3 23.0 1.6E+02 0.0054 22.3 5.3 49 19-69 5-55 (94)
379 2fsw_A PG_0823 protein; alpha- 22.9 88 0.003 23.6 4.2 38 315-352 36-74 (107)
380 3ez9_A Para; DNA binding, wing 22.6 90 0.0031 29.5 5.0 54 297-350 22-76 (403)
381 3hug_A RNA polymerase sigma fa 22.6 1.3E+02 0.0043 22.0 4.9 29 314-342 50-78 (92)
382 1wlx_A Alpha-actinin 4; three- 22.5 24 0.00081 29.0 0.7 64 254-327 41-107 (129)
383 3fx3_A Cyclic nucleotide-bindi 22.3 67 0.0023 27.3 3.7 30 317-347 178-207 (237)
384 1uw4_B UPF2, regulator of nons 22.3 2.3E+02 0.008 25.5 7.4 94 37-157 4-99 (248)
385 3jw4_A Transcriptional regulat 21.7 63 0.0022 25.4 3.2 35 316-350 56-90 (148)
386 3by6_A Predicted transcription 21.6 1.9E+02 0.0066 22.7 6.1 36 314-349 31-67 (126)
387 3hgl_A Effector protein hopab2 21.3 1.9E+02 0.0064 21.6 5.3 48 19-68 7-56 (85)
388 2wm9_A Dedicator of cytokinesi 21.2 67 0.0023 31.3 3.8 31 171-201 5-35 (428)
389 3mzy_A RNA polymerase sigma-H 21.0 97 0.0033 24.3 4.2 30 313-342 120-149 (164)
390 3lmm_A Uncharacterized protein 21.0 20 0.0007 36.5 0.0 40 308-347 521-560 (583)
391 1z05_A Transcriptional regulat 20.4 1.4E+02 0.0049 28.4 6.0 46 303-348 36-84 (429)
392 1v4r_A Transcriptional repress 20.4 59 0.002 24.4 2.6 34 316-349 33-67 (102)
393 2h56_A DNA-3-methyladenine gly 20.2 2.4E+02 0.0081 24.8 7.0 85 20-109 32-121 (233)
394 3b73_A PHIH1 repressor-like pr 20.2 1.4E+02 0.0049 23.3 4.9 34 316-349 26-61 (111)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-58 Score=462.10 Aligned_cols=293 Identities=19% Similarity=0.247 Sum_probs=271.0
Q ss_pred HHHHHHHHHhcCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCCh
Q 018521 56 QLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 133 (354)
Q Consensus 56 ~~l~~~~~~l~~l~--~~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~ 133 (354)
.++..++..+++.| +...+..++.+++.+++|+||||.||++++..||++||++|+|.+|+++|+++++||+| +|++
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-~~~~ 173 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG-SMEM 173 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-SSCH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cccH
Confidence 44455556666555 34567888999999999999999999999999999999999999999999999999998 8999
Q ss_pred hHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 018521 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (354)
Q Consensus 134 ~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~-~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~ 212 (354)
.+|+++|++|+|+|++.+||++|+++++||+...+. .++|+++++|+.|+|++++++++|++||++|+++|.++.+
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~--- 250 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI--- 250 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc---
Confidence 999999999999999999999999999999987765 4689999999999999999999999999999999999864
Q ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhhhccccccccchHHHHHHHHH-HhcChhhH-HHHHHhhchhhhc
Q 018521 213 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE-RILRKPEI-DAFAEELKPHQKA 290 (354)
Q Consensus 213 ~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~kd~r~~~lp~~~~L~k~f~~-~li~~~~i-~~f~~~L~~h~~~ 290 (354)
..|+..+..+|+++++|+||+|++|+|+++++++++|++++++|.|+.|.++|.+ +|++|+.+ ..|...|.+|+.+
T Consensus 251 --~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~ 328 (445)
T 4b4t_P 251 --KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLA 328 (445)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred --cCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence 5688889999999999999999999999999999999999999999999999997 68899875 5689999999988
Q ss_pred cCCCc----HHHHHHHHHHHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecCCC
Q 018521 291 LLPDN----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (354)
Q Consensus 291 ~~~dg----~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akIDqv 354 (354)
..+++ |+.|+++|+||||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+|||+
T Consensus 329 ~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~ 396 (445)
T 4b4t_P 329 FGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRP 396 (445)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETT
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 66554 89999999999999999999999999999999999999999999999999999999996
No 2
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=301.30 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=211.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 018521 86 PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (354)
Q Consensus 86 ~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~ 165 (354)
.++...|.++++....||++|++.||+.+|.+++..++..+.+ .+.|+++|+.++|+|++.+||.+++.+++||+.
T Consensus 121 ~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 121 EEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455678888899999999999999999999999998876654 489999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q 018521 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVL 245 (354)
Q Consensus 166 ~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL 245 (354)
.+.+++||+++++|+.|.|+++++.|+|.+||+.|++++.++. ..+..+....+++|++++.+++.|+++.
T Consensus 197 ~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~---------~~e~~~~~~~~~y~~l~al~~~~r~~l~ 267 (429)
T 4b4t_R 197 MIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT---------SIELTSYESIATYASVTGLFTLERTDLK 267 (429)
T ss_dssp HHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC---------ccchhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999874 2345677888899999999999999999
Q ss_pred Hhhhhccccc----ccc---chHHHHHHHHH-HhcChhhHHHHHHhhchhhh-----ccCCCcHHHHHHHHHHHHHHHHh
Q 018521 246 ATLYKDERCS----KLK---IYPILQKVYLE-RILRKPEIDAFAEELKPHQK-----ALLPDNFTVLDRAMIEHNLLSAS 312 (354)
Q Consensus 246 ~~l~kd~r~~----~lp---~~~~L~k~f~~-~li~~~~i~~f~~~L~~h~~-----~~~~dg~~~L~~~viEHNi~~is 312 (354)
.++..+++.. ..| .+..+...|.. +.. ..|...+..+.. ....++++.|.++|++||+..+.
T Consensus 268 ~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~-----~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~ 342 (429)
T 4b4t_R 268 SKVIDSPELLSLISTTAALQSISSLTISLYASDYA-----SYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLL 342 (429)
T ss_dssp HSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHH-----HHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHH-----HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987642 233 34444555532 222 122222222221 22345699999999999999999
Q ss_pred hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecCCC
Q 018521 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (354)
Q Consensus 313 k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akIDqv 354 (354)
+||++|+|++||++||+|++++|+.+++||.+|+|+|||||+
T Consensus 343 ~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~ 384 (429)
T 4b4t_R 343 ESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRV 384 (429)
T ss_dssp HTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETT
T ss_pred HHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCC
Confidence 999999999999999999999999999999999999999996
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=2.5e-31 Score=263.27 Aligned_cols=319 Identities=13% Similarity=0.177 Sum_probs=264.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHh--cCCCchhhhHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhhccccchHHHH
Q 018521 19 EQYKHILSSVISSNDIVQAKKFIDHML--SDDVPLVVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQPRVVSFEEQ 94 (354)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~sr~~l~~~~~~l~~l~~--~~~~~~~~~~l~~i~~~~i~~E~e 94 (354)
...-.|..-....++.+.|..++.++. =..++--=+-+++..++..+.++|+ +.+.+++...++|...-+-.|-.|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566778888888888763 2446666677899999999999874 566899999999886555555554
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC-chH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~-~~~ 173 (354)
+ +.-+|+++|.+.|+|.+|.+++..+.-+-.. .-+....+|+++.++++|.+.+|+.+++.++.++......+ .+|
T Consensus 100 ~--l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 100 S--LEARLIALYFDTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred H--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 4 5568999999999999999999988654322 22346789999999999999999999999999998887766 789
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHH----hh
Q 018521 174 VLNLQYKVCYARILD-LKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLA----TL 248 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~-~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~----~l 248 (354)
.++..++.|.|.+++ ..|+|.+|+..|++.+.+|+ ..+..++..++++.++|++++..-++...++. ..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~------~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~ 250 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD------SVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAIT 250 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHT
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccc
Confidence 999999999999999 89999999999999999885 45666788999999999999976444443322 22
Q ss_pred hhccccccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhccCCCc-----HHHHHHHHHHHHHHHHhhccccccHHHH
Q 018521 249 YKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDN-----FTVLDRAMIEHNLLSASKLYTNISFEEL 323 (354)
Q Consensus 249 ~kd~r~~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~~~dg-----~~~L~~~viEHNi~~isk~Y~~Itl~~L 323 (354)
|.+ ++++.+..|.+.| ...++..|...|..|+.....|+ +..|.++|++||++.+.+||++|+|++|
T Consensus 251 ~~~---pei~~l~~L~~a~-----~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 251 YSG---RDIDAMKSVAEAS-----HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp TCS---HHHHHHHHHHHHH-----HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHH
T ss_pred cCC---ccHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHH
Confidence 333 3566788888888 56678889999998877777777 6899999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHhhHhcCCeeEecCCC
Q 018521 324 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (354)
Q Consensus 324 a~LL~ls~~eaE~~ls~MI~~grl~akIDqv 354 (354)
|+.||+|++++|..+++||.+|+|+|+|||+
T Consensus 323 A~~l~ls~~evE~~L~~lI~dg~I~a~IDq~ 353 (394)
T 3txn_A 323 AESIQLPMPQVEKKLSQMILDKKFSGILDQG 353 (394)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeeEEEcCC
Confidence 9999999999999999999999999999996
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-28 Score=238.37 Aligned_cols=312 Identities=14% Similarity=0.165 Sum_probs=237.4
Q ss_pred CHHHHHHHHHHHhc--CCCchhhhHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Q 018521 33 DIVQAKKFIDHMLS--DDVPLVVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYES 108 (354)
Q Consensus 33 ~~~~l~~~~~~~~~--~~~~~v~sr~~l~~~~~~l~~l~~--~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~ 108 (354)
+.+.+..++..++. ..++--.+...+...+..+...+. +....+...++.+..... .+..++++...||.+|..
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 70 AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHH
Confidence 44444444444321 233333333445555556655543 344666666666543322 233478899999999999
Q ss_pred ccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc-hHHHHHHHHHHHHHHH
Q 018521 109 EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVLNLQYKVCYARIL 187 (354)
Q Consensus 109 ~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~-~~~lkl~y~~~~~r~~ 187 (354)
.|++.+|.+.++++..++.+ .++...++++++.++|+|+..+||.+|..+++|+.......+ ++.++..++.++|.++
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKK-LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTT-SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred ccChHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999888876 778899999999999999999999999999999998877654 5688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhh--hccccccccchHHHHH
Q 018521 188 DLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY--KDERCSKLKIYPILQK 265 (354)
Q Consensus 188 ~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~--kd~r~~~lp~~~~L~k 265 (354)
.+.++|.+|+++|.+.+.++.. .+.......+..++...++|.++.+........+.... .....+.+|.+..|.+
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 304 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHN--LTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAE 304 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHH--TTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 9999999999999999998753 11223345566778888888888777665555544322 2223456788888999
Q ss_pred HHHHHhcChhhHHHHHHhhchhhhccCCCc-----HHHHHHHHHHHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHh
Q 018521 266 VYLERILRKPEIDAFAEELKPHQKALLPDN-----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASR 340 (354)
Q Consensus 266 ~f~~~li~~~~i~~f~~~L~~h~~~~~~dg-----~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~ 340 (354)
.|.. .++..|...+..|......|+ +..+.+++++||+..++++|++|++++||++||+|++++|..+++
T Consensus 305 ~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~ 379 (434)
T 4b4t_Q 305 AYNN-----RSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQ 379 (434)
T ss_dssp HHHH-----TCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHh-----hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHH
Confidence 8854 344556666666655554444 788999999999999999999999999999999999999999999
Q ss_pred hHhcCCeeEecCCC
Q 018521 341 MIFEDRMRGSIDQV 354 (354)
Q Consensus 341 MI~~grl~akIDqv 354 (354)
||.+|+++|+|||+
T Consensus 380 lI~~~~i~a~id~~ 393 (434)
T 4b4t_Q 380 MILDKIFYGVLDQG 393 (434)
T ss_dssp HHHHTSSCCEEETT
T ss_pred HHhCCCcceecccc
Confidence 99999999999985
No 5
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.7e-22 Score=204.67 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHH----------HHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHH
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAA----------QMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFI 160 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa----------~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~ 160 (354)
++.=.|++..-++..||..|+..+.. ..|-.. .-|..-..+...+.-++..++|+||+.++|.+|+.++
T Consensus 176 lD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~-~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lv 254 (523)
T 4b4t_S 176 LNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF-LKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFI 254 (523)
T ss_dssp ---------------------------CHHHHHHHHTHHHHH-HHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH-HHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHH
Confidence 34445666777777788877765532 122111 1233334566777889999999999999999999999
Q ss_pred HHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcc
Q 018521 161 NKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240 (354)
Q Consensus 161 ~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~ 240 (354)
+|+........+.+ ..+|+-|.||+++.+++|.+|..++...+...+ ........+..+++++|.|-+|.+..|+
T Consensus 255 sk~~fP~~~~sn~q-~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap----~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 255 SKLEYPHTDVSSSL-EARYFFYLSKINAIQLDYSTANEYIIAAIRKAP----HNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HHHCSCTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS----CSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCcCCcccCCHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----cchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 99986555445555 479999999999999999999999988887432 1223445688999999999999999999
Q ss_pred hHHHHHhhhhccccccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhccCCCc----HHHHHHHHHHHHHHHHhhccc
Q 018521 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDN----FTVLDRAMIEHNLLSASKLYT 316 (354)
Q Consensus 241 rs~lL~~l~kd~r~~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~~~dg----~~~L~~~viEHNi~~isk~Y~ 316 (354)
|+.+.+..++. .+..|..|.++| +..++..|...+.+|+..+..|| ..-|+..|+.||++.+++.|+
T Consensus 330 r~lf~q~~l~~----~L~pY~~Lv~Av-----r~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Ys 400 (523)
T 4b4t_S 330 LSFFHQSNMQK----SLLPYYHLTKAV-----KLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYK 400 (523)
T ss_dssp HHHHTTTSCHH----HHHHHHHHHHHH-----HHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred hHHhhchhHHH----HHHHHHHHHHHH-----HcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98876544442 355577788888 77899999999999999999999 455788999999999999999
Q ss_pred cccHHHHHHHhCCC-hHHHHHHHHhhHhcCCeeEecCC
Q 018521 317 NISFEELGTLLGIA-PQKAEKIASRMIFEDRMRGSIDQ 353 (354)
Q Consensus 317 ~Itl~~La~LL~ls-~~eaE~~ls~MI~~grl~akIDq 353 (354)
+|++..+|..||++ ++++|.++++||.+|.|.|+||+
T Consensus 401 rIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh 438 (523)
T 4b4t_S 401 KISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINH 438 (523)
T ss_dssp EECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECT
T ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEec
Confidence 99999999999995 78899999999999999999997
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-20 Score=186.56 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=187.7
Q ss_pred HHHHHHHccCHHHHHHHhcccccc-----c-----CCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc
Q 018521 102 LADLYESEQQWSKAAQMLSGIDLD-----S-----GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 102 LA~i~E~~gd~~eAa~iL~~i~vE-----t-----~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
+....+...|..+|.+.|.++... + .+..-..+..+.+.+.++|+|++.+|...|+.+++++...+...+
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 445566677888888888765321 1 110112356788999999999999999999999999999988765
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhh
Q 018521 172 QE--VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (354)
Q Consensus 172 ~~--~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~ 249 (354)
++ .+..+||.+.+.++..+++|-++...+...+.++.. .+..+++++....-.+++|++++|..+.+.+++...+
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~---~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~ 238 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEP---STSITLAERQQLAYDLSISALLGDKIYNFGELLHHPI 238 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---SSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCC
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc---cccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChH
Confidence 54 566677777777777777787777777777766531 2345678888888889999999999999999999887
Q ss_pred hccc--cccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhcc--CCCcHHHHHHHHHHHHH--HHHhhccccccHHHH
Q 018521 250 KDER--CSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKAL--LPDNFTVLDRAMIEHNL--LSASKLYTNISFEEL 323 (354)
Q Consensus 250 kd~r--~~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~--~~dg~~~L~~~viEHNi--~~isk~Y~~Itl~~L 323 (354)
.+.. .++.+.+..|++.| ...++..|+..+++|.... ...+...+.+.++.+.+ ++.+++|++|+|+.|
T Consensus 239 i~~L~~~~~~~~l~~Ll~~f-----~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~i 313 (393)
T 4b4t_O 239 METIVNDSNYDWLFQLLNAL-----TVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDI 313 (393)
T ss_dssp TTSSCSSSSTTHHHHHHHHH-----HHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHH
T ss_pred HHHhhcCCchHHHHHHHHHH-----hcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHH
Confidence 6542 23455677888888 6778889999888886543 12234455555555554 556689999999999
Q ss_pred HHHhCCChHHHHHHHHhhHhcCCeeEecCCC
Q 018521 324 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (354)
Q Consensus 324 a~LL~ls~~eaE~~ls~MI~~grl~akIDqv 354 (354)
|+.||+|++++|..+++||..|+|.|+|||+
T Consensus 314 a~~l~i~~~evE~lli~aI~~glI~GkIDQv 344 (393)
T 4b4t_O 314 SKATHLPKDNVEHLVMRAISLGLLKGSIDQV 344 (393)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHSCSSSCEETT
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 9999999999999999999999999999996
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.75 E-value=3e-19 Score=139.78 Aligned_cols=63 Identities=67% Similarity=0.909 Sum_probs=61.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecCCC
Q 018521 292 LPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (354)
Q Consensus 292 ~~dg~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akIDqv 354 (354)
++|||++|+++|+||||+.++++|++|++++||++||+|++++|+.+++||.+|+|+|+|||+
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 467899999999999999999999999999999999999999999999999999999999996
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=118.00 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhhhcccc
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERC 254 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~kd~r~ 254 (354)
-.++|+-|.|++++.+++|.+|..++.+.+...+ +.....+..+|++.|.+.+|...-|.+.-+ .+ ++
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~------~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll-~~-~~---- 79 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCH------RSSQKNKRMILIYLLPVKMLLGHMPTVELL-KK-YH---- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHHHHTTCEECHHHH-HH-TT----
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCC------HhHHHHHHHHHHHHHHHHHHcCCCCCHHHh-hh-Cc----
Confidence 3678999999999999999999999999999753 345566789999999999999887766443 22 21
Q ss_pred ccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhccCCCcHHHHHHHHHHHHHHHHhh------ccccccHHHHHHHhC
Q 018521 255 SKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK------LYTNISFEELGTLLG 328 (354)
Q Consensus 255 ~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~~~dg~~~L~~~viEHNi~~isk------~Y~~Itl~~La~LL~ 328 (354)
+..|..|.+++ +..++..|+..|..|+..+..+|.-.+-.+++...++..-| .|++|+++.++..|+
T Consensus 80 --~~~y~~L~~Av-----r~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~ 152 (203)
T 3t5x_A 80 --LMQFAEVTRAV-----SEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALK 152 (203)
T ss_dssp --CGGGHHHHHHH-----HHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHH
T ss_pred --hhHHHHHHHHH-----HhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 12477888877 78899999999999998888888445556676666655544 699999999999995
Q ss_pred ------CChHHHHHHHHhhHhcCCeeEecCC
Q 018521 329 ------IAPQKAEKIASRMIFEDRMRGSIDQ 353 (354)
Q Consensus 329 ------ls~~eaE~~ls~MI~~grl~akIDq 353 (354)
++++|+|-++++||.+|.|.|+||+
T Consensus 153 ~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~ 183 (203)
T 3t5x_A 153 FMQVEDVDIDEVQCILANLIYMGHVKGYISH 183 (203)
T ss_dssp HTTCTTCCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCceEEEEcc
Confidence 5899999999999999999999997
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.6e-10 Score=114.62 Aligned_cols=230 Identities=13% Similarity=0.119 Sum_probs=164.7
Q ss_pred ccCHHHHHHHhcccc-c---ccCC---ccCChhHH--HHHHHHHHHHhhccCCHHHHHHHHHHhhchhc----CCchHHH
Q 018521 109 EQQWSKAAQMLSGID-L---DSGM---RVIDDTFR--LSKCVQIARLYLEDDDAVNAEAFINKASFLVS----SSQQEVL 175 (354)
Q Consensus 109 ~gd~~eAa~iL~~i~-v---Et~~---~~~~~~eK--le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~----~~~~~~l 175 (354)
....++||+++..+= + +-.+ .+.+.+.+ +-+.-...++|+..+....|+.+++-+..... +.-...-
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 346788888887541 0 1000 01111222 33444568999999999999999998866532 1112345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhcCCcCC---CHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhhhc
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI-QKRQIGDETI---DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKD 251 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t-~~~~~~~~~~---d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~kd 251 (354)
.++|+-|.||++..+.+|.+|..++.+.+.. .+. ... ....+..+|++.|.+.+|...-|.++- +.+.+ +
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~----~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-l~k~~-~ 292 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL----PLTNQAITRNGTRILNYMIPTGLILGKMVKWGP-LRPFL-S 292 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HGGGS-C
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc----cccchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-Hcccc-h
Confidence 8899999999999999999999999999987 431 111 134567899999999999988888865 33322 1
Q ss_pred cccccccchHHHHHHHH--HHhcChhhHHHHHHhhchhhhccCCCcH-HHHHHHHHHH---HH-H----HHhhcc--ccc
Q 018521 252 ERCSKLKIYPILQKVYL--ERILRKPEIDAFAEELKPHQKALLPDNF-TVLDRAMIEH---NL-L----SASKLY--TNI 318 (354)
Q Consensus 252 ~r~~~lp~~~~L~k~f~--~~li~~~~i~~f~~~L~~h~~~~~~dg~-~~L~~~viEH---Ni-~----~isk~Y--~~I 318 (354)
+.|...|. .+.++..++..|+..|..|+..+..+|. -.|-.+++.. |+ + ..+..| ++|
T Consensus 293 ---------~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI 363 (455)
T 3t5v_B 293 ---------QETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKL 363 (455)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEE
T ss_pred ---------HHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCee
Confidence 33444343 2455889999999999999998888885 4554444443 22 2 246678 899
Q ss_pred cHHHHHHHhC---------------------CChHHHHHHHHhhHhcCCeeEecCC
Q 018521 319 SFEELGTLLG---------------------IAPQKAEKIASRMIFEDRMRGSIDQ 353 (354)
Q Consensus 319 tl~~La~LL~---------------------ls~~eaE~~ls~MI~~grl~akIDq 353 (354)
+++.++..|+ ++.+++|-+++.||.+|.|.|+||+
T Consensus 364 ~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh 419 (455)
T 3t5v_B 364 PYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFP 419 (455)
T ss_dssp EHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEET
T ss_pred eHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 9999999887 5899999999999999999999986
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.22 E-value=2.5e-05 Score=71.51 Aligned_cols=198 Identities=11% Similarity=0.040 Sum_probs=126.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhc-------hhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 018521 142 QIARLYLEDDDAVNAEAFINKASF-------LVSSSQQEV--LNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (354)
Q Consensus 142 ~i~rL~L~~~D~~~a~~~~~Ka~~-------~~~~~~~~~--lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~ 212 (354)
...+-.++.+||..|...+.+++. ........+ +--..++..|++....++.-+=-+++..+-..|.
T Consensus 12 ~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~---- 87 (229)
T 4b0z_A 12 NHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYH---- 87 (229)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----
Confidence 345556788999999999999852 222222333 3346777778877777666665555555555553
Q ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhhhccccccccchH---HHHHHHHHHhcChhhHHHHHHhhchhhh
Q 018521 213 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYP---ILQKVYLERILRKPEIDAFAEELKPHQK 289 (354)
Q Consensus 213 ~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~kd~r~~~lp~~~---~L~k~f~~~li~~~~i~~f~~~L~~h~~ 289 (354)
+...+.+.....+..-+++.++....++....+..+...+.+.+-|..+ .|.+.+ .-....+|-+.++.+..
T Consensus 88 ~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al-----~~GnY~kff~l~~~~p~ 162 (229)
T 4b0z_A 88 DSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNV-----MEGAFDKVASMIRSCNF 162 (229)
T ss_dssp SCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHH-----HTTCHHHHHHHHHTCCC
T ss_pred ccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHH-----HcCCHHHHHHHHhcCcc
Confidence 1222223345677778888888877778777777765443222233221 222332 23344455544443211
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHhhccccccHHHHHHHhCC-ChHHHHHHHHh---hHhcCCee
Q 018521 290 ALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASR---MIFEDRMR 348 (354)
Q Consensus 290 ~~~~dg~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~l-s~~eaE~~ls~---MI~~grl~ 348 (354)
-....-...|..+|+..-+..+++.|.+|+++.++++||+ ++++++.++.+ -|.+|++.
T Consensus 163 ~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~ 225 (229)
T 4b0z_A 163 PEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIY 225 (229)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEe
Confidence 0001115678889999999999999999999999999999 58899999998 67788764
No 11
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.33 E-value=0.0041 Score=49.33 Aligned_cols=114 Identities=10% Similarity=-0.039 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
...+.+...++.++...|++++|...+...- +.....-+.......+.....+|...+++..|..+++++.......++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 3467788899999999999999999987532 111112244566778999999999999999999999999988877677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+......+...|.++...++|-+|...|.+.....
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999888764
No 12
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.29 E-value=0.002 Score=56.23 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCCcchHHHHHhhh-hccccccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhccCCCcHHHHHHHHH
Q 018521 226 SAAVTCTILAAAGPQRSRVLATLY-KDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMI 304 (354)
Q Consensus 226 ~~av~~~ILa~~~~~rs~lL~~l~-kd~r~~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~~~dg~~~L~~~vi 304 (354)
-.++..++.+|.--.=.++|.... +.=+-.+-..+..|++.| .+.++..|...-..+. .. ...+.+-++
T Consensus 27 ~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF-----~~G~~~~y~~~~~~~p-~L----~~~~~~Klr 96 (169)
T 3chm_A 27 GPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLF-----AHGTWGDYKCNATRLP-HL----SPDQILKLK 96 (169)
T ss_dssp HHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHH-----HHCCHHHHHHHGGGSC-CC----CHHHHHHHH
T ss_pred HHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHH-----hcCCHHHHHHhHHhCc-ch----HHHHHHHHH
Confidence 346778888886554455553211 100001233567888888 4455555654322221 11 144445555
Q ss_pred HHHHHHHhhccccccHHHHHHHhCCC-hHHHHHHHH-hhHhcCCeeEecCCC
Q 018521 305 EHNLLSASKLYTNISFEELGTLLGIA-PQKAEKIAS-RMIFEDRMRGSIDQV 354 (354)
Q Consensus 305 EHNi~~isk~Y~~Itl~~La~LL~ls-~~eaE~~ls-~MI~~grl~akIDqv 354 (354)
.--+...+.--+.|+++.+++.++++ ++++|..+- +.|..|-+.|||||+
T Consensus 97 lLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~ 148 (169)
T 3chm_A 97 QLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQL 148 (169)
T ss_dssp HHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 55555555558999999999999999 999999999 999999999999996
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.17 E-value=0.0032 Score=50.02 Aligned_cols=113 Identities=11% Similarity=-0.001 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
..+.....++.++...|++++|.+.+.... +-....-+.......+.....+|...+++..|..+++++.......+++
T Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 345677889999999999999999887532 1111112345567889999999999999999999999998887666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......+...|.++...++|.+|...|.+.....
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6677888889999999999999999998887754
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.028 Score=49.94 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=119.8
Q ss_pred hhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHhc--------CCCchhhhHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 018521 14 QRQKIEQYKHILSSVISSNDIVQAKKFIDHMLS--------DDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQ 85 (354)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~v~sr~~l~~~~~~l~~l~~~~~~~~~~~~l~~i~ 85 (354)
+......|..+-......++.+.-..+.+..+. +..........+..+...... .+.-......++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 334566677777777777777555555555443 222222222223322222222 2233444444444321
Q ss_pred cccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCcc--CChhHHHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 018521 86 PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (354)
Q Consensus 86 ~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~--~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka 163 (354)
.....-....+.....++.+|...|++++|...+...- +...+. -+.......+....++|...+++..|..+++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 10000113456678899999999999999999988542 111000 123556788999999999999999999999999
Q ss_pred hchhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 164 SFLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 164 ~~~~~~~--~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
....... ++.......+...|.++...++|-+|...|.+.....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8875432 2233355677888999999999999999999988753
No 15
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.93 E-value=0.058 Score=48.99 Aligned_cols=185 Identities=15% Similarity=0.031 Sum_probs=122.4
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHH---HHHHHHhcCC-ChHHHHHHHHHHHHhhccccchHHHHH
Q 018521 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLL---QTFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQV 95 (354)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l---~~~~~~l~~l-~~~~~~~~~~~~l~~i~~~~i~~E~e~ 95 (354)
.+...+...+..++.+....+++.++...-..--.++++ ..+....... ..+.-......++.......-.+ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~~ 154 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--HH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--HH
Confidence 344445555666777777777777765433222222222 1122222222 33444566666666322222222 34
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhccccc--ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~v--Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
+.+...++.+|...|++++|...+...-- +..+ -.......++.....+|...++|..|..+++++.....+.++.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 55778899999999999999998875421 1111 2456678899999999999999999999999998887665555
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh
Q 018521 174 VLNLQYKVCYARILDLKR-KFLEAALRYYDISQIQK 208 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r-~fleAa~~y~e~~~t~~ 208 (354)
......+...|.++...+ .|-+|-..|.+....+.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 566778888899998888 46888888877776543
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.86 E-value=0.092 Score=46.56 Aligned_cols=114 Identities=10% Similarity=-0.035 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
...+.+...++.++...|++++|...+...- +...+.-+.......+.....+|...+++..|..+++++.......++
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 3456678889999999999999999987532 111111234556778999999999999999999999999888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+......+...|.++...++|-+|...|.+.....
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 77777888899999999999999999998887754
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.80 E-value=0.081 Score=49.52 Aligned_cols=113 Identities=10% Similarity=-0.071 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
..+.....+|.+|...|++++|...+...- +.....-+.......+....++|...+++..|..+++++.......+++
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 356678889999999999999999987532 1111112344556788999999999999999999999999888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......+...|.++...++|-+|...|.+.....
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999888754
No 18
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.73 E-value=0.23 Score=45.78 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
...+.....+|.+|...|++++|...+...-- ...+.-+.......+.....+|...+++..|..+++++.......++
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 34567888999999999999999998875421 11112234556778999999999999999999999999988876666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
+......+...|.++...++|-+|...|.+......
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999999887643
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.64 E-value=0.047 Score=45.56 Aligned_cols=112 Identities=12% Similarity=-0.015 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc-hH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QE 173 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~-~~ 173 (354)
.+.+...++.++...|++++|...+...- +-+...-........+.....+|...+|+..|..++.++.......+ ++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQ-QQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 46777889999999999999999887532 11111114566788999999999999999999999999998876555 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......+...|.++...++|-+|...|.+.....
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5667778889999999999999999999988754
No 20
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.63 E-value=0.015 Score=44.53 Aligned_cols=106 Identities=10% Similarity=0.019 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC-Cch
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQ 172 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~-~~~ 172 (354)
+.+.....+|..+...|++++|...+...-- ... .-...+.....+|...+++..|..+++++...... .++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE-LDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 3456678899999999999999999985421 111 12467888999999999999999999999887654 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+......+...|.++...++|.+|-..|......
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4444667778899999999999999999888875
No 21
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.041 Score=43.32 Aligned_cols=103 Identities=12% Similarity=-0.105 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.....+|..+...|++.+|...+....-. .-+.......+.....+|...+++..|..+++++.....+ ++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~- 99 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DV- 99 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CH-
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CH-
Confidence 4556678999999999999999999854211 1123445789999999999999999999999999877443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|...|.+.....
T Consensus 100 ---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 ---KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345567889999999999999999988753
No 22
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.57 E-value=0.028 Score=52.07 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.....+|.+|...|++++|...+...-- -....-+.......+.....+|...|++..|..+++++.......+++.
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLL-LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 455788899999999999999999875421 1111123455688999999999999999999999999998877666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.....+...|.++...++|-+|...|.+......
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999887653
No 23
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.46 E-value=0.26 Score=44.57 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhccccc--ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~v--Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
.+.+...++.+|...|++++|...+....- +... -+.......+..+..+|...++|..|..+++|+.....+.++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 466788999999999999999999875420 1111 122333478999999999999999999999999887655455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAA-LRYYDISQI 206 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa-~~y~e~~~t 206 (354)
.......+...|.++...++|-+|. ..|......
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5556677888899999999999994 445555443
No 24
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.41 E-value=0.048 Score=45.54 Aligned_cols=131 Identities=11% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCC--hhHHHHHHHHHHHHhhccC
Q 018521 74 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID--DTFRLSKCVQIARLYLEDD 151 (354)
Q Consensus 74 ~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~--~~eKle~~l~i~rL~L~~~ 151 (354)
......++....... -....+.....++.+|...|++++|...+...- +-.. ..+ .......+.....++...+
T Consensus 46 ~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~~~~~~~~lg~~~~~~g 121 (203)
T 3gw4_A 46 RASFQALQQQAQKSG--DHTAEHRALHQVGMVERMAGNWDAARRCFLEER-ELLA-SLPEDPLAASANAYEVATVALHFG 121 (203)
T ss_dssp HHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHH-HSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHH-HcCccHHHHHHHHHHHHHHHHHhC
Confidence 444444554433221 233456778899999999999999999887532 1111 122 3366788999999999999
Q ss_pred CHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 152 DAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 152 D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
++..|..++.++.......+++......+...|.++...++|-+|...|.+......
T Consensus 122 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999888766666766677788899999999999999999999888654
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.41 E-value=0.25 Score=46.19 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=88.7
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch-HHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNL 177 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~-~~lkl 177 (354)
...++.++...|++++|...+...- +-....-++....+++.....+|...+++..|..+++++.....+.++ .....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3448899999999999999987542 111112245668899999999999999999999999999999877655 55566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.-+...|.++...++|-+|-..|.+.....+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 215 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999999987654
No 26
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.39 E-value=0.071 Score=47.32 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
..+.+...++.+|...|++++|...+...-- -..+.-+.......+....++|...+++..|..++.++.......+++
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc
Confidence 3466788999999999999999999875321 111112345668899999999999999999999999999888776677
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRK--------------------FLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~--------------------fleAa~~y~e~~~t~ 207 (354)
......+...|.++...++ |.+|-..|.+.....
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777788889999999999 888888887776543
No 27
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.33 E-value=0.018 Score=46.15 Aligned_cols=104 Identities=13% Similarity=-0.009 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHhccc-ccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc
Q 018521 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 90 ~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i-~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~ 168 (354)
++.-+.+.....++..|.+.|+|++|.+.+... .++ ..-...|......|...+++..|...++|+..+-.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 445566777788999999999999999998753 111 11256888999999999999999999999987744
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 169 SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 169 ~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+ ++ ..+...|.++...++|-+|-..|.......
T Consensus 79 ~--~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 79 K--FI----KGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp T--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred h--hh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3 22 345677999999999999999999998864
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.43 Score=40.75 Aligned_cols=180 Identities=11% Similarity=-0.044 Sum_probs=106.2
Q ss_pred HhHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhccccchHHHH
Q 018521 16 QKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQ 94 (354)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l~-~~~~~~~~~~~l~~i~~~~i~~E~e 94 (354)
..++.|..+-......++.+.-..+.+..+... .-.. +...+...+..+. .+.-......+++.- +....-...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 77 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDIT---YLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHH---HHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHH
Confidence 345667777777777777754444444444322 2222 2222223332232 233344444444432 111101122
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCcc------------------C-ChhHHHHHHHHHHHHhhccCCHHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV------------------I-DDTFRLSKCVQIARLYLEDDDAVN 155 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~------------------~-~~~eKle~~l~i~rL~L~~~D~~~ 155 (354)
.+.....++.+|...|++++|...+....--..... + ........+.....++...+++..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 367788899999999999999998875421000000 0 123345677788888888888888
Q ss_pred HHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 156 AEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 156 a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
|..+++++...... ++ ..+...|.++...++|-+|-..|.+....
T Consensus 158 A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 158 AVKAYTEMIKRAPE--DA----RGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc--cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88888888776543 22 35556788888888888888888887765
No 29
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.32 E-value=0.007 Score=49.99 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=72.7
Q ss_pred HHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHH
Q 018521 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (354)
Q Consensus 101 ~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~ 180 (354)
.|+.++.+.|++++|...++.. . -.+.+.-..++...++|...+||..|..+++|+.....+ ++ ..+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a----~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~----~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGS----T---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DP----KAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHH----S---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHh----c---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Confidence 4778888999999999988742 1 134566667788999999999999999999999887553 33 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 181 VCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 181 ~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...|.++...++|-+|-..|.......
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELN 95 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 677999999999999999999998853
No 30
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.27 E-value=0.11 Score=46.99 Aligned_cols=108 Identities=9% Similarity=-0.089 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y 179 (354)
...+..+...|++++|.+.+..+.-.... .-.....+.++..+.-+|...+++..|..+++++.......+++......
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34567788999999999999875432211 11112236666678889999999999999999999877666676666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 180 KVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 180 ~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
+...|.++...++|-+|-..|.++.....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999987543
No 31
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.26 E-value=0.032 Score=44.56 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC-ch
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQ 172 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~-~~ 172 (354)
+.|.....|+..+.+.|+|++|...+...- + +++ .-...|.....+|+..++|..|...++|+..+..+. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~-----~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-E-----LDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-----hCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 345556789999999999999999987421 1 111 125688889999999999999999999998776542 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+....+-+..+|..+...++|.+|-..|......
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555566777899999999999999999887764
No 32
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.22 E-value=0.048 Score=42.21 Aligned_cols=103 Identities=10% Similarity=-0.065 Sum_probs=78.3
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
...+|..+...|++++|...+..+--... +.....+.+.....+|...+|+..|..+++++.....+... ...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYP----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHH
Confidence 35688999999999999999986532111 22334578888899999999999999999999887654221 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.+...|.++...++|-+|-..|..+...++
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 445678889999999999999999888653
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.17 E-value=0.13 Score=44.62 Aligned_cols=111 Identities=13% Similarity=-0.051 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhccccc---ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDL---DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~v---Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
..+.....+|.+|...|++++|...+...-- ...+ -+.......+....++|...+++..|..+++++.......
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG--PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999875421 1111 1234567889999999999999999999999998763210
Q ss_pred -------------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 171 -------------------------------------------QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 171 -------------------------------------------~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
.+.......+...|.++...++|-+|...|.+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011223456677888999999999988888777653
No 34
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.15 E-value=0.14 Score=46.37 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
...+.......++.++...|++++|...+...- +-.....+.......+..+..+|...+++..|..+++|+.......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~ 188 (293)
T 2qfc_A 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 334555666779999999999999999876431 1111122344467899999999999999999999999998665432
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 171 -QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 171 -~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+++......+...|.++...++|-+|-..|.+.....
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444454677788999999999999999999887753
No 35
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.10 E-value=0.076 Score=49.69 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
..+.....++..+...|++++|...+....-. . .-+.......+.....+|...+++..|..+++++.......++.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA-G--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 34445567899999999999999999864321 1 11345567889999999999999999999999998887665666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......+...|.++...++|-+|-..|.+.....
T Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999988764
No 36
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.91 E-value=0.15 Score=46.38 Aligned_cols=112 Identities=13% Similarity=-0.001 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhcc-CCHHHHHHHHHHhhchhcCCchH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~-~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
.+.....++.+|...|++++|...+...- +-+...-+...-...+.....+|... +++..|..+++++..+....+++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 46677889999999999999998876421 11110112334467888999999996 99999999999999887655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......+.-.|.++...++|-+|...|..+....
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445566777999999999999999999988854
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.085 Score=41.04 Aligned_cols=100 Identities=11% Similarity=-0.096 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.....++..+...|+|++|...+...--- ++ .-...+......|...+++..|...++++...... ++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~- 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR------AP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FV- 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cH-
Confidence 3556678899999999999999998753211 11 11478899999999999999999999999887543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|-..|.......
T Consensus 73 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 73 ---RAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 345567899999999999999999888764
No 38
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.79 E-value=0.18 Score=38.13 Aligned_cols=103 Identities=10% Similarity=-0.052 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
....+.....+|..+...|++++|...+...--... .-...+.....+|...+++..|..+++++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--
Confidence 344566778899999999999999999885421111 11567888999999999999999999999876443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
++ ..+...|.++...++|-+|...|.......
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 79 YS----KAYGRMGLALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 22 345677889999999999999999888753
No 39
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.75 E-value=0.087 Score=39.25 Aligned_cols=99 Identities=15% Similarity=-0.071 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.....+|..+...|++++|...+...--.. + .-...+.....+|...+++..|..+++++...... ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~- 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD------P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WG- 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------C-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cH-
Confidence 34566788999999999999999998542111 1 12568888999999999999999999999877543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|.+|...|......
T Consensus 73 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 ---KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34556788888999999999999888775
No 40
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.74 E-value=0.093 Score=48.20 Aligned_cols=113 Identities=14% Similarity=0.022 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
..+.....++.+|...|++++|...+...- +-+...-+...-...+..+..+|.. +|+.+|..+++++.......+++
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 456777889999999999999998887421 1111111234457788899999988 99999999999999888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
......+.-.|.++...++|-+|...|.+......
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66667778889999999999999999999988653
No 41
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.73 E-value=0.06 Score=50.67 Aligned_cols=115 Identities=13% Similarity=-0.042 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCC-hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~-~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
+...+.+...+|.+|...|++.+|...+...- +-+.+..+ .......+.....+|...+++..|..+++++.....+.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 45678889999999999999999998876421 22221112 34567888899999999999999999999999988766
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+++......+...|.++...++|-+|-..|.+.....
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6777777888899999999999999999999988744
No 42
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.72 E-value=0.032 Score=49.61 Aligned_cols=113 Identities=14% Similarity=0.061 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCcc--CChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC-
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS- 170 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~--~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~- 170 (354)
..+.....++.++...|++++|...+....- -..+. -+.......+.....+|...+++..|..++.++.......
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999985421 10000 1346678899999999999999999999999998876432
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 171 -QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 171 -~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
++.......+..+|.++...++|-+|...|.+.....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 3334456777888999999999999999999888754
No 43
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.70 E-value=0.14 Score=47.95 Aligned_cols=115 Identities=10% Similarity=-0.051 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCC-hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~-~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
....+.+...+|.+|...|++++|...+...- +.+.+.-+ .......+.....+|...+++..|..+++++.....+.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 44577888999999999999999998887432 22211112 44567888999999999999999999999999988777
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+++......+...|.++...++|-+|-..|.+.....
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777888889999999999999999999998854
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.66 E-value=0.08 Score=45.99 Aligned_cols=112 Identities=15% Similarity=0.052 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhccccc---ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC-
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDL---DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS- 169 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~v---Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~- 169 (354)
..+.....+|.+|...|++++|...+....- +.++ -+.......+.....+|...+++..|..+++++......
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4566788999999999999999999875421 1111 123566889999999999999999999999999887432
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 170 -SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 170 -~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+++.......+...|.++...++|-+|-..|.+.....
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 12233345677788999999999999999999988753
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.61 E-value=0.61 Score=40.10 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhccccchHHHHHH
Q 018521 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQVL 96 (354)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l~-~~~~~~~~~~~l~~i~~~~i~~E~e~a 96 (354)
...|..+-......++.+.-..+.+..+...-........+. ....... .+.-......++.. .+. ..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la---~~~~~~~~~~~A~~~~~~a~~~-~~~-------~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA---VVFQTEMEPKLADEEYRKALAS-DSR-------NA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHH-CTT-------CH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHH-CcC-------cH
Confidence 455555555555566654333344443322211122222222 2222221 22334444444442 222 24
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.+...++.+|...|++++|.+.+....- .+ ........+...+.+|...+++..|..+++++...... ++
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~--- 175 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ--DT---LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QP--- 175 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT--CT---TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CH---
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh--Cc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cH---
Confidence 5677899999999999999999986432 11 12334678888899999999999999999999776543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+|-..|......
T Consensus 176 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 176 -SVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567788899999999999888887764
No 46
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.52 E-value=0.33 Score=48.76 Aligned_cols=133 Identities=9% Similarity=0.056 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhccc---ccccCCccCChhHHHHHHHHHHHHh
Q 018521 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGI---DLDSGMRVIDDTFRLSKCVQIARLY 147 (354)
Q Consensus 71 ~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i---~vEt~~~~~~~~eKle~~l~i~rL~ 147 (354)
+.-......+|..-...-..--...+.....||.+|...|+|++|....+.. ....+|. +--.-...+...+.+|
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH--NNAQLGMAVMRAGLTN 403 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 3345556666664333222223357888999999999999999999887743 1233331 2234577888999999
Q ss_pred hccCCHHHHHHHHHHhhchhcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 148 LEDDDAVNAEAFINKASFLVSS---SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 148 L~~~D~~~a~~~~~Ka~~~~~~---~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...|+|..|+.++.||...... .++|... .-+...+..+...++|.+|-..|+..-..
T Consensus 404 ~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITK-DLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877643 3455543 44477788888999999999999887653
No 47
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.49 E-value=0.13 Score=41.96 Aligned_cols=107 Identities=11% Similarity=-0.004 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccc--c---CCccCC------hhHHHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLD--S---GMRVID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vE--t---~~~~~~------~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka 163 (354)
.+.....++..+...|+|.+|...+...--- + ....-+ +.....++......|+..++|..|..+.+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4556677899999999999999887743110 0 000001 3445789999999999999999999999999
Q ss_pred hchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 164 SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 164 ~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+-.. ++ ..+...|..+...++|-+|-..|.......
T Consensus 90 l~~~p~--~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREET--NE----KALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCc--ch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 887432 22 345567889999999999999999988753
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.49 E-value=0.018 Score=47.52 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
...+.......||.+|...|++++|.+.+...-- +++ .-.+.|.....+|...+++..|..+++++..+..+
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~------~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 97 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN------VQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT- 97 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-
Confidence 4455666778899999999999999999985321 111 12568888999999999999999999999887553
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYD-ISQ 205 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e-~~~ 205 (354)
+++ .+...|.++...++|.+|++.|.+ ...
T Consensus 98 -~~~----~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 98 -QKD----LVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp -CHH----HHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred -CHH----HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 333 344568888888999999998865 444
No 49
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.46 E-value=0.17 Score=38.64 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
..-...+|..+...|++++|...+...-- .. + ...+.+.....+|...+++..|..+++++...... ++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~-- 84 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK-RN-----P-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FI-- 84 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT-TC-----T-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-----C-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ch--
Confidence 34456789999999999999999985421 11 1 12578889999999999999999999999887543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|-..|.+.....
T Consensus 85 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 85 --KGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 345667888999999999999999888753
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.42 E-value=0.21 Score=45.77 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......+|.++...|++++|.+.+.. + .-.+.+...+++|+..|++..|...++++.....+ + .
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~------~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~--~ 164 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ------G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED--A--T 164 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT------C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC------C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--c--H
Confidence 34578899999999999999999985 1 22468888899999999999999999999877432 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+-...+.++...++|-+|...|.++....
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 22222333344455688999999999888764
No 51
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.41 E-value=0.074 Score=43.65 Aligned_cols=102 Identities=9% Similarity=-0.118 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
+.+.....++..+...|+|++|...+...-- . . ..-..++.....+|+..+++..|..+++++...... +
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-----~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~- 78 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALS-I-----A-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--Y- 78 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----C-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C-
Confidence 4566778899999999999999999985321 1 1 112578899999999999999999999999887543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
...+...|.++...++|-+|-..|.......+
T Consensus 79 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 79 ---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 24556779999999999999999999988653
No 52
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.36 E-value=0.24 Score=39.55 Aligned_cols=101 Identities=14% Similarity=-0.067 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
+.+.....+|..+...|++++|...+...--.. ....+.+.....++...+++..|..+++++...... ++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 81 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YI 81 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cH
Confidence 356677889999999999999999988532111 112568888999999999999999999999887543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|...|.......
T Consensus 82 ----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 82 ----KGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345567888999999999999999988753
No 53
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.21 E-value=0.1 Score=43.66 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhccccc-----hHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHh
Q 018521 73 QKEIANYTLAQIQPRVV-----SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY 147 (354)
Q Consensus 73 ~~~~~~~~l~~i~~~~i-----~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~ 147 (354)
..+|...+.+.+..|.. .+..........+|..+...|++++|...+...--- + ..-.++|......|
T Consensus 8 ~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~-P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------D-FYNVDYIMGLAAIY 80 (151)
T ss_dssp -CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C-CCCHHHHHHHHHHH
Confidence 33444445555555443 334456677789999999999999999999854211 1 11245888899999
Q ss_pred hccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 148 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 148 L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+++..|...++|+..+..+ +++ .+...|..+...++|-+|-..|.......
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~--~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKN--DYT----PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSS--CCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHccHHHHHHHHHHHHhhCCC--CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988765 333 34467899999999999999999998864
No 54
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.21 E-value=0.047 Score=51.88 Aligned_cols=102 Identities=10% Similarity=0.001 Sum_probs=77.0
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH-HHHHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE-VLNLQ 178 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~-~lkl~ 178 (354)
..+|.+++..|++++|.+.+... ++.+ +....++.++..+++++..|+...|...+++......+ ..| +-.+.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~-i~~~----~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d-~~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEG-IDND----EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED-TVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-HTSS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hccC----CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-ccccchHHH
Confidence 57999999999999999999853 1211 11468999999999999999999999999998554220 001 12334
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q 018521 179 YKVCYARILDLKR--KFLEAALRYYDISQIQ 207 (354)
Q Consensus 179 y~~~~~r~~~~~r--~fleAa~~y~e~~~t~ 207 (354)
.....+.+....+ +|.+|...|-++...+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 5566676677666 9999999999998865
No 55
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.20 E-value=0.51 Score=44.14 Aligned_cols=113 Identities=11% Similarity=-0.038 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch-H
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-E 173 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~-~ 173 (354)
.......++..+...|++++|...+...- +-....-++....+++.....+|...+++..|..++.++.......++ +
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 34456678899999999999999887532 111112245778999999999999999999999999999998876554 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.....-+...|.++...++|-+|-..|.+......
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44566777889999999999999999999887643
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.19 E-value=0.3 Score=36.44 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++..+...|++++|.+.+....-... .....+.....++...+++..|..+++++...... ++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA-- 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cH--
Confidence 45667889999999999999999985431111 12457888899999999999999999999876432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|.+|-..|.+....
T Consensus 78 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 --EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23456788888999999999999888775
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.12 E-value=0.15 Score=42.14 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.+-..|+.+|...|++++|.+.+...- + .++ .-.+.+.....+|...+++..|.....++....... +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al-~-----~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~- 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVL-K-----ADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--A- 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-H-----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--H-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-----hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--H-
Confidence 35677889999999999999999998532 1 111 125688889999999999999999999998776542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
......|.++...++|.+|...|.......
T Consensus 74 ---~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 74 ---EAYYILGSANFMIDEKQAAIDALQRAIALN 103 (184)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 234556788888899999998888887753
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.12 E-value=1.2 Score=36.97 Aligned_cols=168 Identities=11% Similarity=0.002 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhccccchHHHHHH
Q 018521 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQVL 96 (354)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l~-~~~~~~~~~~~l~~i~~~~i~~E~e~a 96 (354)
+..|..+.......++.+.-..+.+..+...-.-......+. ..+.... .+.-......++.. .+. ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~a~~~-~~~-------~~ 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRA---EIYQYLKVNDKAQESFRQALSI-KPD-------SA 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHHH-CTT-------CH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHH---HHHHHcCChHHHHHHHHHHHHh-CCC-------Ch
Confidence 445665666666666765554455544422111111222222 2222222 23334444444442 222 23
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 97 IIREKLADLYESE-QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 97 ~l~~~LA~i~E~~-gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
.....++.++... |++++|...+....- .+ ........+....++|...+++..|..+++++...... ++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 147 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA--DP---TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--FP-- 147 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT--ST---TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH--
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc--Cc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Cc--
Confidence 4567899999999 999999999986532 11 12234678888999999999999999999999776543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|.+|...|.+.....
T Consensus 148 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 148 --PAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999998887753
No 59
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.11 E-value=0.25 Score=41.72 Aligned_cols=107 Identities=9% Similarity=-0.035 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhccccc-ccCCcc-----C---ChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDL-DSGMRV-----I---DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~v-Et~~~~-----~---~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~ 165 (354)
.+.....+|..+...|+|++|...+...-- ...... . ....+..++.....+|+..++|..|..+++++..
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455667789999999999999998875421 110000 0 0111358899999999999999999999999988
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 166 ~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.... +. ..+...|.++...++|-+|-..|.......
T Consensus 117 ~~p~--~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 117 IDKN--NV----KALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HSTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hCcc--cH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 7432 22 345677889999999999999998887753
No 60
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.08 E-value=0.25 Score=44.89 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.+-...+.+|...|+|++|...+...- +-..+.-+...-...+.....+|...|++..|..+++|+..+....+++...
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344556788999999999998886431 1111111234457789999999999999999999999999988776666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 018521 177 LQYKVCYARILDLK-RKFLEAALRYYDISQIQK 208 (354)
Q Consensus 177 l~y~~~~~r~~~~~-r~fleAa~~y~e~~~t~~ 208 (354)
...+.-.|.++... ++|-+|-..|.+.....+
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 67777889999997 999999999999988654
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.065 Score=46.11 Aligned_cols=104 Identities=8% Similarity=-0.111 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC-chH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~-~~~ 173 (354)
.+.....+|..+...|++++|...+...--.. ...+.+......|...+++..|..+++++.....+. +++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 45667889999999999999999998542111 224688899999999999999999999998876543 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
......+...|.++...++|-+|-..|......
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 445678888999999999999999999988874
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.07 E-value=0.34 Score=41.53 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc-hHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVLN 176 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~-~~~lk 176 (354)
....+|.++...|++++|.+.+...-- . ...-...+.....+|...+|+..|..+++++.....+.. .+...
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~------~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIK------K-NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH------T-TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHH------h-CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 445589999999999999999874321 1 112467889999999999999999999999988876532 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...+...|.++...++|-+|-..|......
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 456778899999999999999999988774
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.03 E-value=0.29 Score=39.35 Aligned_cols=100 Identities=7% Similarity=0.066 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
++.....++..+...|++++|...+....-... .....+...+.+|...+++..|..+++++...... ++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~- 76 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NV- 76 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH-
Confidence 456677899999999999999999986532111 12567888899999999999999999999876432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|-..|..+....
T Consensus 77 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 77 ---KVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345667889999999999999999888753
No 64
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.99 E-value=0.25 Score=45.24 Aligned_cols=112 Identities=11% Similarity=0.012 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.+-...+.+|...|+|++|...+...- +...+.-+...-...+.....+|...+++..|..+++++..+..+.+++.
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34455566888999999999998887431 11111113345577888999999999999999999999999887766676
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.....+...|.++.. ++|-+|-..|.+....+.
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 666777788899988 999999999999887654
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.96 E-value=0.24 Score=43.66 Aligned_cols=107 Identities=9% Similarity=-0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
.+.....+|..+...|+|++|...+..+--. .. +.....+.+.....+|...+||..|..+++++.....+.+...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-GR---THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-CS---CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CC---CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3556788999999999999999999976422 11 2234567889999999999999999999999998876432211
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhh
Q 018521 175 LNLQYKVCYARILDL--------KRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 175 lkl~y~~~~~r~~~~--------~r~fleAa~~y~e~~~t~~ 208 (354)
.-+...|..+.. .++|-+|-..|.++...++
T Consensus 90 ---~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 90 ---QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp ---HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred ---HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 234456778888 8999999999999988754
No 66
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=94.72 E-value=0.13 Score=40.06 Aligned_cols=100 Identities=12% Similarity=-0.038 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++..+...|++++|...+...-- ... .-..++.....+|...+++..|..+++++...... ++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~-- 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT-RNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV-- 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hH--
Confidence 55667899999999999999999885321 111 11468899999999999999999999999887543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
..+...|.++...++|-+|-..|.......+
T Consensus 78 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 78 --KAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3556778899999999999999998887643
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.59 E-value=1.4 Score=35.14 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=104.5
Q ss_pred HhHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhccccchHHHH
Q 018521 16 QKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQ 94 (354)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l-~~~~~~~~~~~~l~~i~~~~i~~E~e 94 (354)
.....|..+.......++.+.-....+..+...-.-. .+...+....... ..+.-......++.. .+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~------- 74 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV---DVALHLGIAYVKTGAVDRGTELLERSLAD-APD------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC-------
Confidence 3445555555555555666555555555543322211 1222222222222 122334444444442 222
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
...+...+|.++...|++++|.+.+....-- . + .....+....++|...+++..|..+++++...... +
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~----~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~-- 143 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-N----P--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--E-- 143 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C----c--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--c--
Confidence 2345678899999999999999998854211 1 1 12467888899999999999999999999876533 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+...|.++...++|-+|...|.......
T Consensus 144 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 144 --GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2355677888999999999999998887754
No 68
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.51 E-value=0.28 Score=39.30 Aligned_cols=102 Identities=9% Similarity=0.016 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
........+|..+...|++++|...+...--. ++ .-..+|.....+|...+++..|...++++.....+ ++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~ 86 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML------DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EP 86 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh------CC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 34455678899999999999999999854211 11 12467888899999999999999999999887553 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
. .+...|.++...++|-+|...|.......+
T Consensus 87 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 87 R----FPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3 345678899999999999999998887643
No 69
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.057 Score=51.10 Aligned_cols=111 Identities=7% Similarity=0.034 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.++..++.++...|++++|..++.... +.............++...+++|...|+|..|..+++++.......++...
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSI-EFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 3456677888888899998888876432 111111223346778899999999999999999999999888777677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...++...++++...++|.+|-..|..+....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 88999999999999999999999988887654
No 70
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.42 E-value=0.29 Score=46.81 Aligned_cols=106 Identities=13% Similarity=0.001 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCc----------cCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMR----------VIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~----------~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~ 164 (354)
.+.....+|..+...|+|++|...+...-- -... .-........|.....+|+..++|..|..+++++.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~-~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLR-YVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 455677899999999999999988874321 0000 00234567899999999999999999999999998
Q ss_pred chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 165 ~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
....+ +. ..+...|..+...++|-+|...|.......
T Consensus 301 ~~~p~--~~----~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 301 EIDPS--NT----KALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhCch--hH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 86432 22 344567888999999999999999888753
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.37 E-value=0.26 Score=43.37 Aligned_cols=109 Identities=14% Similarity=-0.013 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc--------cCCHHHHHHHHHHhhchh
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE--------DDDAVNAEAFINKASFLV 167 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~--------~~D~~~a~~~~~Ka~~~~ 167 (354)
......+|.+|...|++++|...+..+-- .+. +.....+.+......+.. .+++..|..+++++....
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p---~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQ---IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT---TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCC---CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 45678899999999999999999986432 111 112335677888888888 999999999999998887
Q ss_pred cCCchHH-HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 168 SSSQQEV-LNLQY----------KVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 168 ~~~~~~~-lkl~y----------~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.+..... ..... ....|.++...++|.+|-..|.++...++
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 6543221 11111 14568899999999999999999988653
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.33 E-value=0.2 Score=42.22 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc----
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---- 171 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~---- 171 (354)
+.....++.+|...|++++|...+...--- . ..-...+.....+|...+++..|..+++++.....+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINR------D-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 346677888888888888888877643210 0 11145677788888888888888888888877654322
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 172 ------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 172 ------~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
........+...|.++...++|-+|-..|......
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 11112244556778888888888888888887764
No 73
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.28 E-value=1.8 Score=39.55 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCC--ccC-ChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGM--RVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~--~~~-~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
......++.+|...|++++|...+....--... ... .......++.....+|...+++..|..+++++........+
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 456788999999999999999998754210000 000 00012345556688999999999999999999887654223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+. .+...|.++...++|-+|-..|.+.....
T Consensus 213 ~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 213 PD----LQTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 44567889999999999999999988753
No 74
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.26 E-value=0.4 Score=39.10 Aligned_cols=101 Identities=10% Similarity=-0.030 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
........+|..+...|++++|...+...--. + ..-.+.|.....+|...+++..|...++++.....+ ++
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~ 89 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL------D-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EP 89 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------C-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cc
Confidence 34556677899999999999999999854211 1 112467788899999999999999999999887553 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
. .+...|.++...++|-+|-..|.......
T Consensus 90 ~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 90 R----FPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 34567899999999999999999888754
No 75
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.21 E-value=1.6 Score=42.74 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.....++.+|...|++++|.+.+....-.......++......|...+.+|...|++..|..+++++.....+ ++
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~--- 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DA--- 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 4567889999999999999999986421100001123334788999999999999999999999999877532 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|.+|...|.++....
T Consensus 551 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 551 -NVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 456677889999999999999999988864
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.05 E-value=3.1 Score=37.03 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=79.0
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
...+|.++...|++++|...+....-.. . -+.......+.....+|...+++..|..+++++.....+ ++ .
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~ 307 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-P--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NV----N 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cH----H
Confidence 4566899999999999999998653211 1 134455677888999999999999999999999887432 33 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++...++|.+|...|.......
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56677999999999999999999998854
No 77
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.29 Score=36.42 Aligned_cols=89 Identities=4% Similarity=-0.045 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++..+...|++++|...+...--- .+ .-...+.....+|...+++..|..+++++.....+.+++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 445677899999999999999988753211 11 11467888999999999999999999999988766444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 018521 176 NLQYKVCYARILDLKR 191 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r 191 (354)
....+...|..+...+
T Consensus 77 ~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555554444
No 78
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.03 E-value=0.81 Score=38.75 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......+|.++...|++++|...+....- ... ...+.+...+.+|...+++..|..+++++...... ++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 159 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALR-AGM------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DT-- 159 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTC------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CH--
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cH--
Confidence 45567788888888888888888875421 111 11346777788888888888888888888766442 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+|-..|.+....
T Consensus 160 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 160 --EARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24556778888888888888888777664
No 79
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.01 E-value=0.3 Score=38.39 Aligned_cols=94 Identities=11% Similarity=-0.078 Sum_probs=74.0
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y 179 (354)
..+|..+...|++++|...+...--. + ..-.+.|.....++...+++..|...++|+..+..+ +++ .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~------~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~----~ 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK------E-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIA----V 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----H
Confidence 56788899999999999999854211 1 112567888899999999999999999999888653 332 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 180 ~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+...|.++...++|-+|-..|......
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457788999999999999999888764
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.85 E-value=0.67 Score=41.53 Aligned_cols=108 Identities=13% Similarity=0.025 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccC------ChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI------DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~------~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
.....+|.++...|++++|...+....- ...... ..-.++...+..+..+...+++..|..+++++.....+
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 4566788888888888888887765421 111000 00112233456688899999999999999999887654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
++......+...|.++...++|.+|-..|.+.....
T Consensus 267 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 267 -VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 555666677788999999999999999999998853
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.75 E-value=0.41 Score=40.27 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=75.9
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
...+|..+...|++++|...+.... +. ....+.....+|...+|+..|..+++++...... ++ .
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~----~ 72 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DP---------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LA----V 72 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--ch----H
Confidence 4678999999999999999998652 11 2358899999999999999999999999877543 22 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++...++|-+|-..|.......
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 45567899999999999999999988753
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.75 E-value=0.3 Score=36.73 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....++..+...|++++|.+.+....-... .-...+...++++...+++..|..+++++...... ++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~---- 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA---- 69 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--ch----
Confidence 346788999999999999999885421111 11456777899999999999999999998766432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+|-..|.+....
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23445678888888898888888887764
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.73 E-value=0.47 Score=35.61 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.....++.++...|++++|...+....-. .. .-...+.....++...+++..|..+++++...... ++
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 103 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA--- 103 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CC------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 34567899999999999999998854211 11 11356778899999999999999999998876443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
......|.++...++|.+|...|.+....
T Consensus 104 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 104 -EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23345688888888999998888877664
No 84
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.56 E-value=0.6 Score=38.28 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHH-hhccCCH--HHHHHHHHHhhchhcCCch
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL-YLEDDDA--VNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL-~L~~~D~--~~a~~~~~Ka~~~~~~~~~ 172 (354)
......+|.+|...|++++|...+...---.. .-...+.....+ |...+++ ..|..+++++...... +
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--~ 114 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--E 114 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--c
Confidence 34678899999999999999999875321110 114577788888 8899998 9999999999887543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+ ..+...|.++...++|-+|-..|..+....
T Consensus 115 ~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 115 I----TALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred H----HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 2 344567888999999999999998888754
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.50 E-value=0.38 Score=41.42 Aligned_cols=101 Identities=10% Similarity=-0.088 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......+|.+|...|++++|.+.+...--. .. .....+.....+|...+++..|..+++++.. .. .++.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~--~~~~- 139 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS-DS------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DT--LYPE- 139 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CT--TCTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Cc------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Cc--cCcc-
Confidence 456778999999999999999999854211 11 1246788889999999999999999999987 11 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
....+...|.++...++|-+|-..|.+.....
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23455677889999999999999999888753
No 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=93.37 E-value=0.31 Score=45.69 Aligned_cols=109 Identities=17% Similarity=0.047 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccc-cccCCccCC-------hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVID-------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~-vEt~~~~~~-------~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~ 164 (354)
...+.....++..|...|++++|...+...- +.......+ ...+...+.....+|+..++|..|..+++++.
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4467778889999999999999999887532 111100011 12236899999999999999999999999998
Q ss_pred chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 165 ~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+... ++ ..+...|.++...++|-+|-..|.......
T Consensus 224 ~~~p~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 224 ELDSN--NE----KGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhCCC--cH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 87543 22 345567889999999999999999988753
No 87
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.35 E-value=0.34 Score=37.35 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=66.6
Q ss_pred HccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHH
Q 018521 108 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL 187 (354)
Q Consensus 108 ~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~ 187 (354)
..|++++|...+...- +. ..++..-...+.....+|...+++..|..+++++.....+ ++ ..+...|.++
T Consensus 2 ~~g~~~~A~~~~~~al-~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-AS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQ----ALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHH-SS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH-Hc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch----HHHHHHHHHH
Confidence 3577778877776432 11 1235667889999999999999999999999999887654 33 3455679999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 018521 188 DLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 188 ~~~r~fleAa~~y~e~~~t~ 207 (354)
...++|-+|-..|.......
T Consensus 72 ~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988864
No 88
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.22 E-value=0.92 Score=35.94 Aligned_cols=101 Identities=8% Similarity=-0.127 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
..+...+|.++...|++++|...+...-- .. + .-...+.....++...+++..|..+++++...... ++..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-----~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~ 117 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIE-LD-----K-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDA 117 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-----c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHH
Confidence 44667889999999999999998875321 11 1 12467888999999999999999999999877553 3332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
. +....+..+...++|.+|-..|.......
T Consensus 118 ~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 118 K--MKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 2 22334445667889998888887765543
No 89
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.18 E-value=3.9 Score=38.20 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCC------hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~------~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
......++.+|...|++++|...+....- ....... .-.+.+..+..+..|...+++..|..+++++......
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 45677899999999999999999986531 1110000 0012233455689999999999999999999886543
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 170 ~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
++......+.+.|.++...++|-+|-..|.+....
T Consensus 290 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 290 --IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp --SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66666778889999999999999999999998775
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=93.16 E-value=0.8 Score=42.28 Aligned_cols=114 Identities=8% Similarity=-0.110 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
...++.+...++.++...|++++|...+...- +... .-+.......+.....+|...+|+..|..++.++.......+
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLAL-EELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 34466777888999999999999999876531 1111 123344566777788899999999999999999998877666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
++..........|.++...++|-+|-..|.+.....
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 666666677788999999999999999998887754
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.07 E-value=1.4 Score=37.56 Aligned_cols=73 Identities=7% Similarity=-0.072 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~ 167 (354)
.......+|.+|...|++++|...+...---...-..-.....+.+.....++...+++..|..+++++....
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 147 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT 147 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC
Confidence 3556788999999999999999999854211100000112234789999999999999999999999998763
No 92
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.90 E-value=0.92 Score=37.18 Aligned_cols=98 Identities=13% Similarity=-0.021 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......||.+|...|++++|...+........ .....+......+...+++..|.....++...... ++
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~-- 107 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV--YA-- 107 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--ch--
Confidence 34567789999999999999988875432111 12356667788888999999999999998876553 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
......|.++...++|-+|-..|......
T Consensus 108 --~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 108 --DAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 23456688899999999999998888775
No 93
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.89 E-value=0.13 Score=37.97 Aligned_cols=98 Identities=8% Similarity=-0.085 Sum_probs=73.8
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
...+|.++...|++++|...+...--. .. ...+.+.....++...+++..|..+++++........+. .
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~ 77 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL-DP------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK----D 77 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH-CC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH----H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-Cc------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH----H
Confidence 356888999999999999988753211 10 114578888999999999999999999998775431122 3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 018521 179 YKVCYARILDLK-RKFLEAALRYYDISQIQ 207 (354)
Q Consensus 179 y~~~~~r~~~~~-r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++... ++|.+|.+.|..+....
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 456678888888 99999999888887753
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.88 E-value=1.6 Score=37.52 Aligned_cols=108 Identities=10% Similarity=-0.095 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHH------------------hhccCCHHHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL------------------YLEDDDAVNAEA 158 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL------------------~L~~~D~~~a~~ 158 (354)
.....++..|...|+|++|...+..+-- .+..+. ..-..+...... +...+++.+|..
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~P~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHP---NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCT---THHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCC---cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 4567799999999999999999986532 111111 111222223333 334689999999
Q ss_pred HHHHhhchhcCCch-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 159 FINKASFLVSSSQQ-EVLN----------LQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 159 ~~~Ka~~~~~~~~~-~~lk----------l~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.++++.....+... ++.. ..+....|.++...++|.+|...|..+...++
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 99999888776431 2111 12234668889999999999999999988764
No 95
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.82 E-value=0.3 Score=42.54 Aligned_cols=99 Identities=14% Similarity=0.011 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
...+|..+...|++++|...+....- ... ...+.+.....+|...+++..|..+++++.. .. ++++....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~ 75 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEA-KKY------NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSA 75 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-TTC------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-hCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHH
Confidence 45678888888999999888876421 111 0123677777888888999999998888877 22 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++...++|-+|-..|..+....
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 56778888888888888888888887753
No 96
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.79 E-value=0.45 Score=42.31 Aligned_cols=105 Identities=9% Similarity=0.013 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhccccc--ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~v--Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
......++.++...|++++|...+...-- +..+...+.......+.....+|...+++..|..+++++.....+ ++
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~ 270 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NA 270 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CS
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--ch
Confidence 45667788999999999999888875421 111111122333568889999999999999999999999877543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|.+|...|......
T Consensus 271 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 271 ----STYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 34556789999999999999999888764
No 97
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.76 E-value=0.41 Score=41.55 Aligned_cols=102 Identities=10% Similarity=-0.143 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
...+.....++.++...|++++|...+...-- ... ...+.+.....+|...+++..|..+++++...... +
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~ 110 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALA-IRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--Y 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-cCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--c
Confidence 34567778899999999999999988875321 110 12457788889999999999999999999877543 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+ ..+...|.++...++|-+|...|.......
T Consensus 111 ~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 111 N----YAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp T----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred c----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2 345567888888899999999998888753
No 98
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.38 E-value=1.8 Score=36.46 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......+|.++...|++++|.+.+....-. . ......+...+++|...+++..|..+++++...... ++.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~- 126 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL-D------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGD- 126 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHH-
Confidence 456677899999999999999998854211 1 112567888899999999999999999999877543 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++...++|-+|-..|.+.....
T Consensus 127 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 127 ---LFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp ---HHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45567888999999999999999888753
No 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.37 E-value=0.61 Score=38.84 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++..+...|++++|.+.+....-... ...+.+.....+|...+++..|..++.++...... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~-- 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD--SA-- 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--Ch--
Confidence 44556666777777777777766654321100 01345566666677777777777777776554332 11
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 018521 176 NLQYKVCYARILDLK-RKFLEAALRYYDISQ 205 (354)
Q Consensus 176 kl~y~~~~~r~~~~~-r~fleAa~~y~e~~~ 205 (354)
..+...|.++... ++|-+|-..|.....
T Consensus 77 --~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 77 --EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp --HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 1334456666666 666666666666655
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.33 E-value=6.5 Score=36.60 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=77.9
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y 179 (354)
..++..+...|++++|...+...-- .. .-+.....+.+...+.++...+++..|..+++++.....+ ++ ..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~-~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~----~~ 331 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMK-TE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--NV----NA 331 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-cC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cH----HH
Confidence 4459999999999999999986532 11 1134455778999999999999999999999999876432 22 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 180 KVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 180 ~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+...|.++...++|-+|...|.......
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5567889999999999999999998853
No 101
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.18 E-value=0.69 Score=42.71 Aligned_cols=110 Identities=12% Similarity=-0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhccccc---ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDL---DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~v---Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
.+.....++.++...|++++|...+...-- +.++ .........+.....+|...||+..|..++.++.......+
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL--EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 356678899999999999999988875421 1111 00123455667788999999999999999999988776655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
++. ....+...|+++...++|-+|...|.+.....
T Consensus 170 ~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 170 PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444 34566778999999999999999988887653
No 102
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.02 E-value=5.3 Score=38.95 Aligned_cols=99 Identities=10% Similarity=-0.139 Sum_probs=43.9
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC-CchHHHHHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQ 178 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~-~~~~~lkl~ 178 (354)
..++.+|...|++++|.+.+..+.- ... . ....|...+.+|...|++..|..+++++.....+ ..+|+....
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYA-LFQ----Y--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HCC----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-hCC----C--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 3445555555555555555543210 000 0 1134445555555555555555555555444321 112221123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
.+...|.++...++|-+|-..|.++..
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555555555444
No 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.83 E-value=6.3 Score=34.62 Aligned_cols=100 Identities=10% Similarity=-0.079 Sum_probs=52.1
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH---HHH
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE---VLN 176 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~---~lk 176 (354)
..++.+|...|++++|...+...--. . + .....+....++|...+++..|..+++++.......+++ .-.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~-~----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSI-A----P--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-C----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh-C----C--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 33666666666666666666532110 0 0 113455556666666666666666666665554321111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...+...|.++...++|-+|-..|.+....
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 234445566666666666666666665553
No 104
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.4 Score=45.81 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
+.+.....+|..+...|++++|...+....-.. + ....+...+..|+..+++..|..+++++.....+ ++
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~ 73 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK------E--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YS 73 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------c--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HH
Confidence 345667889999999999999999998653211 1 1568899999999999999999999999876543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|-..|..+....
T Consensus 74 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 74 ----KVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345668999999999999999999887643
No 105
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.73 E-value=5.7 Score=33.91 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHc-----------cCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 018521 96 LIIREKLADLYESE-----------QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (354)
Q Consensus 96 a~l~~~LA~i~E~~-----------gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~ 164 (354)
......|+.++... |++++|...+...-- .++ .-.+.+.....+|...|++..|...++++.
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~------~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER------VNP-RYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH------hCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34556788888888 999999998874321 111 124678888999999999999999999998
Q ss_pred chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 165 ~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
... ++++ .+...|.++...++|-+|-..|.......
T Consensus 146 ~~~---~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 146 ALE---DTPE----IRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHC---CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred hcc---cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 876 3443 34567889999999999999999988753
No 106
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.71 E-value=0.93 Score=41.19 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++.+|...|++++|...+....-- . + .-...+....++|...+++..|..+++++...... ++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~-- 285 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-R-----P-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YI-- 285 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-----c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH--
Confidence 456678899999999999999988753211 1 0 11457888899999999999999999998776432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
..+...|.++...++|-+|...|.......+
T Consensus 286 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 286 --RSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3456778899999999999999988887643
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.66 E-value=1.3 Score=37.86 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=73.4
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHH----------------HHHHhhccCCHHHHHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQ----------------IARLYLEDDDAVNAEAFINK 162 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~----------------i~rL~L~~~D~~~a~~~~~K 162 (354)
....+..+...|++++|...+...-- .++ .-.+.+.. ...+|...+++..|...+++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~------~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA------LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------HCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH------hCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35567778899999999999875321 111 12334444 89999999999999999999
Q ss_pred hhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 163 ASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 163 a~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+..+..+ ++ ..+...|.++...++|-+|-..|..+....
T Consensus 80 al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 80 LLQKAPN--NV----DCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9887654 33 345567999999999999999999998864
No 108
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.66 E-value=1.1 Score=43.93 Aligned_cols=97 Identities=8% Similarity=-0.016 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhcc---------CCHHHHHHHHHHhhch
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED---------DDAVNAEAFINKASFL 166 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~---------~D~~~a~~~~~Ka~~~ 166 (354)
+.....||.+|...|++++|...+...- ..++. ...+.....+|... +++..|..+++++...
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGAL------THCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 4577889999999999999999998532 12223 37888999999999 9999999999999887
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhh
Q 018521 167 VSSSQQEVLNLQYKVCYARILDLK--------RKFLEAALRYYDISQI 206 (354)
Q Consensus 167 ~~~~~~~~lkl~y~~~~~r~~~~~--------r~fleAa~~y~e~~~t 206 (354)
..+ ++ ..+...|.++... ++|-+|-..|......
T Consensus 209 ~p~--~~----~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 209 DVL--DG----RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp CTT--CH----HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC--CH----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 654 22 2445668888888 9999999999998875
No 109
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.58 E-value=0.91 Score=41.57 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....++.+|...|++++|...+...--- . + .-...+.....+|...+++..|..+++++.....+ +
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~----p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~--- 280 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTV-R----P--EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--F--- 280 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c---
Confidence 345667888888888888888888753211 1 0 11457778888888888888888888888776433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
...+...|.++...++|-+|...|.......+
T Consensus 281 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 281 -IRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp -HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 23455678888888888888888888877543
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=91.53 E-value=0.67 Score=45.42 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHhcccc-cccCCccCCh-------hHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 018521 94 QVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDD-------TFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~-vEt~~~~~~~-------~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~ 165 (354)
..+.....++..+...|+|.+|...+...- +.......++ ..+...|.....+|+..++|..|..+++++..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456677889999999999999998887431 1111001111 22378999999999999999999999999988
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 166 ~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+... + ...+...|..+...++|-+|-..|..+...
T Consensus 346 ~~p~--~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDSA--N----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7543 2 234556788899999999999999988874
No 111
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.7 Score=44.05 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc---cCCHHHHHHHHHHhhchhcCCchH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE---DDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~---~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
.....+|.++...|++++|...+...--.... ..........+.....+|.. .+++..|..+++++.....+ ++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 449 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SE 449 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cH
Confidence 34566788888888888888877653210000 11111124478888999999 99999999999999876543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 174 ~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|.+|...|.+.....
T Consensus 450 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 450 ----QAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 345677899999999999999999998864
No 112
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.34 E-value=2.1 Score=36.76 Aligned_cols=97 Identities=8% Similarity=-0.133 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....++..+...|++++|...+...--. ++ .-.+.+.....++...+++..|..+++|+.....+ +++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~--- 74 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE------NP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLG--- 74 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT------SS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH---
Confidence 4567899999999999999998853211 11 12467888899999999999999999999887654 222
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhh
Q 018521 178 QYKVCYARILDLK-----------RKFLEAALRYYDISQIQ 207 (354)
Q Consensus 178 ~y~~~~~r~~~~~-----------r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++... ++|-+|-..|.......
T Consensus 75 -a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 75 -GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp -HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 334567778888 99999999999988753
No 113
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.34 E-value=3.6 Score=40.19 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHccCH-HHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 94 QVLIIREKLADLYESEQQW-SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 94 e~a~l~~~LA~i~E~~gd~-~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
..+.....++.+|...|++ ++|.+.+...--. + ..-.+.|.....+|...+|+..|..+++++.....+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~------~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 169 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL------E-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--- 169 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Confidence 3577888999999999999 9999999853211 1 112468899999999999999999999999887532
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhh
Q 018521 173 EVLNLQYKVCYARILDLK---------RKFLEAALRYYDISQIQ 207 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~---------r~fleAa~~y~e~~~t~ 207 (354)
...+...|.++... ++|-+|-..|.+.....
T Consensus 170 ----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 170 ----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp ----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 15666778888888 99999999999998864
No 114
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.24 E-value=0.46 Score=35.82 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~ 173 (354)
......+|.+|...|++++|...+...-- .. + .-...|.....+|...+++..|..+++|+..+....++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-----p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE-TD-----P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-----T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-----C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 45678899999999999999999885421 11 0 113478889999999999999999999998876543333
No 115
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=91.16 E-value=0.68 Score=40.20 Aligned_cols=99 Identities=9% Similarity=-0.088 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....+|.+|...|++++|...+...-- .. -+.......+.....+|...+++..|..+++++...... ++
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~---- 108 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KV---NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RL---- 108 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TS---CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-cc---CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cH----
Confidence 456677788888888888888775432 11 122334556777888888888888888888888776443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+|-..|.+....
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 23456677777788888887777766553
No 116
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.10 E-value=1 Score=39.83 Aligned_cols=99 Identities=13% Similarity=-0.012 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......++.++...|++++|.+.+...-- ... .-...+...+.+|...+++..|..+++++...... ++
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~-- 240 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVE-LRP------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG--YV-- 240 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH--
Confidence 46678899999999999999999885421 111 11467888899999999999999999999776443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|.+|...|.+.....
T Consensus 241 --~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 241 --RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 234567888999999999999998888764
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.01 E-value=2 Score=36.96 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....+|..+...|+|++|...+..+--. +. +.....+.++.....|...+||..|...++++.....+..... ..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~-~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~-~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR-YP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH-HH
Confidence 4567888999999999999999975421 11 1123456788889999999999999999999988776533211 11
Q ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhhh
Q 018521 178 QYKVCYARILDL------------------KRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 178 ~y~~~~~r~~~~------------------~r~fleAa~~y~e~~~t~~ 208 (354)
.| ..|..+.. .+++-+|...|.++...++
T Consensus 81 ~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 81 MY--MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HH--HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HH--HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 22 22333322 4688888888888887654
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.81 E-value=1.2 Score=40.34 Aligned_cols=99 Identities=12% Similarity=-0.025 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.....+|..+...|++++|...+...--.. ..-..++.....+|...+++..|..+++++.....+ ++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~--- 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV--- 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH---
Confidence 455678999999999999999998532111 112468888999999999999999999999887443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
..+...|..+...++|-+|-..|.......+
T Consensus 73 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 73 -KAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3455678999999999999999998887543
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.73 E-value=1.6 Score=40.71 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
.++..++..+|..+-..|++++|..++..+... + ..++ ...-...+|+..++|..|..++.++... .+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~-----p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVA--G-----SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--T-----CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SC
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C-----CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CC
Confidence 457889999999999999999999999976531 1 2333 4444556999999999999999866443 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
+.+....+.+.|..+..-++|-+|-.+|.+...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 544455667889999999999999999999875
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.61 E-value=1.1 Score=33.65 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~ 168 (354)
..+...+|.+|...|++++|...+...---..............+.....+|...+++..|..+++++.....
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 3466788999999999999999887542110000112233478899999999999999999999999987643
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.58 E-value=1.7 Score=45.63 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....|+.+|.+.|++++|.+.++..- + +.+ .-.+.+.....+|...|++..|..+++|+..+..+ +.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl-~-----l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~-- 77 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKAL-E-----VFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FA-- 77 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-----HCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--
Confidence 4556778999999999999998887421 1 011 11456777888999999999999999999877543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+|-..|......
T Consensus 78 --~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 78 --DAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24456788888889999999998888774
No 122
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.40 E-value=1.8 Score=42.53 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccc---cccCCccCChhHHHHHHHHHHHHh
Q 018521 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIARLY 147 (354)
Q Consensus 71 ~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~---vEt~~~~~~~~eKle~~l~i~rL~ 147 (354)
+.-......+|..-..--..--...+.....||.+|...|+|++|....+..- ...+|. +--.-...+.....+|
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--YSLNVASMWLKLGRLY 392 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHH
Confidence 44456666666643332222334478888999999999999999999887531 123331 2244567788899999
Q ss_pred hccCCHHHHHHHHHHhhchhcC---CchHHHH
Q 018521 148 LEDDDAVNAEAFINKASFLVSS---SQQEVLN 176 (354)
Q Consensus 148 L~~~D~~~a~~~~~Ka~~~~~~---~~~~~lk 176 (354)
...|+|..|..++.||..+... .++|..+
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999877643 3455443
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.26 E-value=0.71 Score=40.93 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH-
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV- 174 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~- 174 (354)
......++.++...|++++|...+....- .. ......+....++|...+++..|..+++++.....+..++.
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALD-IN------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 45677899999999999999999985421 11 11245788889999999999999999999988765522211
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 -----LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 -----lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.....+...|.++...+++-+|...|......+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 134566788899999999999888887655543
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.24 E-value=1.5 Score=40.78 Aligned_cols=101 Identities=18% Similarity=-0.003 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
...+.+...||.+|...|++++|...+...-- +++ .-...+.....+|...+++..|..+++|+..+..+ +
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~ 263 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALE------LDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--N 263 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--C
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--C
Confidence 34467888999999999999999998875321 111 12467888999999999999999999999887654 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAAL-RYYDISQI 206 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~-~y~e~~~t 206 (354)
+. .+...+.++...+++.+|.+ .|..++..
T Consensus 264 ~~----a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 KA----AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 34456777888888888844 45555543
No 125
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.91 E-value=16 Score=35.85 Aligned_cols=92 Identities=11% Similarity=0.092 Sum_probs=73.9
Q ss_pred HHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 018521 115 AAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFL 194 (354)
Q Consensus 115 Aa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fl 194 (354)
-..++..+.--|.||..=..++.++..+.+.+|.+.|||..|-.++..+..-.....+...++.|+....|++...++|.
T Consensus 115 ~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~ 194 (445)
T 4b4t_P 115 RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYS 194 (445)
T ss_dssp HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555445556554456778888899999999999999999999997766666677889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 018521 195 EAALRYYDISQI 206 (354)
Q Consensus 195 eAa~~y~e~~~t 206 (354)
.|-..+..+...
T Consensus 195 ~a~~~~~ki~~~ 206 (445)
T 4b4t_P 195 QATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 998888777653
No 126
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.90 E-value=14 Score=35.21 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
+...++.++...|++++|...+....-.... -...+.....+|...+++..|..+++++.....+ +++
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--- 379 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPE--- 379 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTH---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChH---
Confidence 3445555555666666665555533211000 0134445555555555555555555555544322 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
.+...|.++...++|-+|-..|.....
T Consensus 380 -~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 380 -VPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222335555555555555555555443
No 127
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.88 E-value=1.2 Score=33.83 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
......+|.+|...|++++|...+...-- . ++ .-...+.....+|...+++..|..++.++......
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-----~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALD-F-----DP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-H-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34677899999999999999999875321 1 11 11457788899999999999999999999877654
No 128
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.84 E-value=0.92 Score=45.47 Aligned_cols=104 Identities=9% Similarity=-0.097 Sum_probs=77.5
Q ss_pred HHHHHHHccCHHHHHHHhcccccccCCccCCh--hHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc---CCchHHHH
Q 018521 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDD--TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLN 176 (354)
Q Consensus 102 LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~--~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~---~~~~~~lk 176 (354)
.+.-+..+|+|++|..++...- +...+.+++ -.-+..+-..+.+|...|+|..|..+..|+..... ..++|+.-
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455778999999988776432 111122222 35688888999999999999999999999977654 34577754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-+.-.|.+|...++|-+|-..|.......
T Consensus 394 -~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 394 -MAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 445566889999999999999998888754
No 129
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=89.82 E-value=1.4 Score=42.45 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=78.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhc
Q 018521 86 PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (354)
Q Consensus 86 ~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~ 165 (354)
|....+-...+.....++.++...|++++|...+....- .++. .+.+.....+|...+++..|..+++++..
T Consensus 233 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN------LHPT--PNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh------cCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 343334445667778889999999999999999885421 1222 56788888899999999999999998877
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 166 ~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...+ ++ ..+...|.++...++|-+|-..|......
T Consensus 305 ~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 305 LNPE--YP----PTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 6543 22 23556778888888888888888887764
No 130
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.78 E-value=2.4 Score=40.08 Aligned_cols=155 Identities=8% Similarity=-0.017 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCCh-----hHHHHHHHHHHHHhhccC--CHHHHHHHHHHhhchh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-----TFRLSKCVQIARLYLEDD--DAVNAEAFINKASFLV 167 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~-----~eKle~~l~i~rL~L~~~--D~~~a~~~~~Ka~~~~ 167 (354)
...+...++.++...|+.+.|.+.++.++ ..++ +.-+-+++-...+.+..+ ++..|--++.......
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~------~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYT------NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 44566778999999999999999998653 2233 456667777776666555 9999999999987665
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcC--CCHHHHHHHHHHHHHHHHhcCCCcchHHHH
Q 018521 168 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET--IDEEALEQALSAAVTCTILAAAGPQRSRVL 245 (354)
Q Consensus 168 ~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~--~d~~e~~~~L~~av~~~ILa~~~~~rs~lL 245 (354)
.+...+.+ .|- .+++.++|-+|-..+..+...++. . ..+ .++.+ -.+|-++|.|.....- +-.+++
T Consensus 209 p~~~~~~l--Lln-----~~~~~g~~~eAe~~L~~l~~~~p~-~-~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 209 PTWKTQLG--LLN-----LHLQQRNIAEAQGIVELLLSDYYS-V-EQKENAVLYK-PTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp CSHHHHHH--HHH-----HHHHHTCHHHHHHHHHHHHSHHHH-T-TTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHH
T ss_pred CCcccHHH--HHH-----HHHHcCCHHHHHHHHHHHHHhccc-c-cccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHH
Confidence 42111222 121 688899999988888765543210 0 000 01222 3677667666665532 556788
Q ss_pred Hhhhhc-cccccccchHHHHHHH
Q 018521 246 ATLYKD-ERCSKLKIYPILQKVY 267 (354)
Q Consensus 246 ~~l~kd-~r~~~lp~~~~L~k~f 267 (354)
.++.+- |.-+-+-++....+.|
T Consensus 277 ~qL~~~~P~hp~i~d~~~k~~~F 299 (310)
T 3mv2_B 277 NQLVKLDHEHAFIKHHQEIDAKF 299 (310)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH
Confidence 888873 4333333344444444
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.75 E-value=1.9 Score=42.74 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....+|.+|...|++++|...++..-- .++ .-.+.+.....+|...+++..|..+++++.....+ ++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~-- 91 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA------LHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--HP-- 91 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------TST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CH--
Confidence 45677889999999999999998875321 111 12567888899999999999999999999877543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++...++|-+|-..|.+.....
T Consensus 92 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 92 --GIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344567888889999999999888887753
No 132
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.51 E-value=3.4 Score=40.41 Aligned_cols=106 Identities=9% Similarity=-0.037 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccc---cccCCccCChhHHHHHHHHHHH
Q 018521 69 EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIAR 145 (354)
Q Consensus 69 ~~~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~---vEt~~~~~~~~eKle~~l~i~r 145 (354)
.-+........+|..-..--..--...+.....||.+|...|+|++|....+..- ...+|. .-..-...+.....
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--SHPVRGVQVMKVGK 379 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--SCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--CChHHHHHHHHHHH
Confidence 3344456666666532222122233478889999999999999999998887432 133331 22445778889999
Q ss_pred HhhccCCHHHHHHHHHHhhchhcC---CchHHHH
Q 018521 146 LYLEDDDAVNAEAFINKASFLVSS---SQQEVLN 176 (354)
Q Consensus 146 L~L~~~D~~~a~~~~~Ka~~~~~~---~~~~~lk 176 (354)
+|...+++..|..++.||...... .++|..+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999999999999877653 3455433
No 133
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.47 E-value=0.26 Score=42.87 Aligned_cols=97 Identities=13% Similarity=-0.011 Sum_probs=76.1
Q ss_pred HHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHH
Q 018521 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (354)
Q Consensus 102 LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~ 181 (354)
++......|++++|...+..+--. . ..++....+.+....+.|...+++..|..+++++...... ++ ..+.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~~ 81 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILAS-R--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MP----EVFN 81 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTS-S--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CH----HHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhc-c--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cH----HHHH
Confidence 444556678999999988865322 1 2345677899999999999999999999999999887543 22 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 182 CYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 182 ~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..|.++...++|-+|-..|.......
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 67899999999999999999988753
No 134
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.96 E-value=1.4 Score=33.51 Aligned_cols=69 Identities=6% Similarity=-0.008 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
.....++.++...|++++|...+..+--. .. +.....+.+....++|...|++..|..+++++.....+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSR-YP---THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH-CC---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46678999999999999999999864211 11 11223567888899999999999999999999887654
No 135
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.84 E-value=2.7 Score=29.62 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=55.7
Q ss_pred CChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 131 ~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+++....+.+......+...+++..|..+++++...... ++ ..+...|.++...++|-+|...|.+.....
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344456778889999999999999999999999876543 22 345577889999999999999999888753
No 136
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=88.83 E-value=0.67 Score=34.37 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=36.2
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
-=+-+.++.||.-||++.+++-.-+-.+..+|+|.|-||
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViD 56 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVID 56 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEEC
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEe
Confidence 345688999999999999999999999999999999998
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.56 E-value=4.1 Score=36.71 Aligned_cols=97 Identities=10% Similarity=-0.044 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.....+|..+...|++++|...+...--.. + .-.+.+....++++..|++..|...++++.....+ +.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~---~~-- 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS------N-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD---TR-- 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---HH--
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC------C-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---hH--
Confidence 455789999999999999999998542211 1 12467888899999999999999999999766442 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
......+..+...+++.+|...|......
T Consensus 186 -~~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 186 -YQGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 11223333455666777787778777765
No 138
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=88.55 E-value=3.7 Score=36.91 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=50.0
Q ss_pred HHhcChhhHHHHHHhhchhhhccCCCcHHHHHHHHHHHHHHHHhhccccccHHHHHHHhC-CChHHHHHHHHh
Q 018521 269 ERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLG-IAPQKAEKIASR 340 (354)
Q Consensus 269 ~~li~~~~i~~f~~~L~~h~~~~~~dg~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~-ls~~eaE~~ls~ 340 (354)
.+.+....-.+|.+.++...... .....|...|++.=...+++.|.+|+++.++++|| ++++++++.+.+
T Consensus 106 ~~~L~~~~y~~fW~~l~~~~~l~--~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~ 176 (226)
T 1rz4_A 106 GDLLETCHFQAFWQALDENMDLL--EGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK 176 (226)
T ss_dssp HHHHHTTCHHHHHHHSCTTCHHH--HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcChhHH--HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 34555556667776665321100 01233677788888888999999999999999995 899999988876
No 139
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.48 E-value=0.85 Score=41.46 Aligned_cols=104 Identities=8% Similarity=-0.130 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......++.++...|++++|...+...--- . ......+....++|...+++..|..+++++.....+..++.-
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL------Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 456778999999999999999999854211 1 122467888999999999999999999999887665422211
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 -----NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 -----kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
....+...|..+...+++-+|...+......
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 1455667788888888888887777654443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.40 E-value=4.4 Score=30.85 Aligned_cols=66 Identities=14% Similarity=-0.006 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 136 Kle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+.+.+......++..+||..|..+++++...... ++ ..+...|..+...++|-+|-..|.......
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 68 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DA----RGYSNRAAALAKLMSFPEAIADCNKAIEKD 68 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4577888999999999999999999999887543 22 456677899999999999999999988753
No 141
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.35 E-value=6.1 Score=38.48 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHhccccc------------------ccCC---ccC-------------ChhHH---HH--
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDL------------------DSGM---RVI-------------DDTFR---LS-- 138 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~v------------------Et~~---~~~-------------~~~eK---le-- 138 (354)
.-..|+++|.+.|+.++.++.+..+.. |-+. .+. ...+| +.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999999998888876521 0010 000 00111 11
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 139 KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 139 ~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+-.+.+.+|++.+||.+|...+++........+|..+.+..+.+.+++|...+++..+-..|...-.+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 223678899999999999999999988887777888999999999999999999999877777766554
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=88.34 E-value=2.3 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.042 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
..+...++.+|...|++++|...+...-- +++ .-...+.....+|...+++..|..+++++..+..+..+
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATV------VDP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 45677899999999999999998874321 111 12568889999999999999999999999988765433
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.11 E-value=3.3 Score=32.66 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 135 eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-.+.+......++..+++..|..+++++...... ++ .++...|.++...++|-+|-..|.......
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DA----RYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34677888999999999999999999999876543 33 355677999999999999999999998753
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.96 E-value=3 Score=33.72 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 135 eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+.+......+...+++..|..+++++...... ++ .++...|.++...++|-+|-..|..+....
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44778888999999999999999999999877543 33 344567899999999999999999998763
No 145
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=87.90 E-value=0.97 Score=33.65 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=37.0
Q ss_pred HHHHHHHhhccc---cccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 305 EHNLLSASKLYT---NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 305 EHNi~~isk~Y~---~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
++.|+.+-+--. .+|..+||+.||+|...+...+.+|..+|.|...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 344444434334 7999999999999999999999999999999764
No 146
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.51 E-value=3.9 Score=42.87 Aligned_cols=167 Identities=12% Similarity=0.037 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhhccccchHHHHH
Q 018521 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQV 95 (354)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l~-~~~~~~~~~~~l~~i~~~~i~~E~e~ 95 (354)
-++.|..+-.-....++.+.-....+..+.-+=.-.....-|. ..+..+. .+.-......+++ +.|. .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg---~~l~~~g~~~eA~~~~~~Al~-l~P~-------~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA---SVLQQQGKLQEALMHYKEAIR-ISPT-------F 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH---HHHHHTTCHHHHHHHHHHHHH-HCTT-------C
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHH-hCCC-------C
Confidence 3567777776666777775444444443321111122222233 3333332 1233444444554 2333 3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....|+.+|.+.|++++|.+.++..- + +.+ .-.+.+.....+|...|++..|..+++|+..+..+ +++
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~-----l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~- 146 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAI-Q-----INP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPD- 146 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-----HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-H-----hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChH-
Confidence 4567789999999999999998887421 0 111 12467888899999999999999999999887553 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|.++...++|-+|...|..+....
T Consensus 147 ---a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 147 ---AYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp ---HHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ---HHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 34456788888888888888888776643
No 147
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=87.40 E-value=3.4 Score=35.07 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
..+...+|.+|...|++++|...+...-- .++ .-.+.+.....+|...|++..|..+++|+..+-.+
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQ------KAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34556799999999999999999874321 111 12578888999999999999999999999887654
No 148
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.37 E-value=4.6 Score=37.15 Aligned_cols=93 Identities=10% Similarity=0.015 Sum_probs=68.8
Q ss_pred HHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHH
Q 018521 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (354)
Q Consensus 101 ~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~ 180 (354)
.+|..+...|++++|...+..+--.. ++. ...+.....+++..+++..|..+.+++...... + ...+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~----~~~~ 70 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQE-----PDN--TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--L----AEAY 70 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c----hHHH
Confidence 36888899999999999887542111 111 356777788899999999999999888765432 2 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 181 VCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 181 ~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...|.++...++|-+|-..|......
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 67788888899999999888888764
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=87.21 E-value=5.2 Score=28.98 Aligned_cols=66 Identities=9% Similarity=-0.031 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 136 Kle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+.+.+....+.+...+++..|..+++++...... ++ ..+...|.++...++|-+|...|.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999999876543 22 355667888999999999999999888753
No 150
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.10 E-value=3.1 Score=40.88 Aligned_cols=98 Identities=10% Similarity=-0.104 Sum_probs=73.8
Q ss_pred HHccCHHHHHHHhccc---ccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC---CchHHHHHHHH
Q 018521 107 ESEQQWSKAAQMLSGI---DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS---SQQEVLNLQYK 180 (354)
Q Consensus 107 E~~gd~~eAa~iL~~i---~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~---~~~~~lkl~y~ 180 (354)
...|+|++|..++... .....|. +--.-+..+-..+.+|...|+|.+|..+..|+...... .++|+.-..|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l- 385 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFED--SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW- 385 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCT--TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccCh--hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-
Confidence 3457899998887643 2233331 22456788888999999999999999999999776543 4577765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 181 VCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 181 ~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-.|.+|...++|-+|-..|.......
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 456889999999999999998888754
No 151
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.01 E-value=1.7 Score=34.20 Aligned_cols=75 Identities=12% Similarity=0.007 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.+...+|.+|...|++++|...+...- + ++ ..-.+.|.....+|...+++..|...++++..+-.+ +++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~-----~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~a 117 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCI-R-----LD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS--NEEA 117 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-----HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHH-H-----hh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC--CHHH
Confidence 3456778999999999999998887421 1 11 112467889999999999999999999999887654 4554
Q ss_pred HHHH
Q 018521 176 NLQY 179 (354)
Q Consensus 176 kl~y 179 (354)
+..+
T Consensus 118 ~~~l 121 (126)
T 4gco_A 118 REGV 121 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 152
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.79 E-value=2.6 Score=39.02 Aligned_cols=186 Identities=12% Similarity=0.074 Sum_probs=90.9
Q ss_pred HHhhccCCHHHHHHHHHHhhchhcCC---------c----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018521 145 RLYLEDDDAVNAEAFINKASFLVSSS---------Q----QEVLNL--QYKVCYARILDLKRKFLEAALRYYDISQIQKR 209 (354)
Q Consensus 145 rL~L~~~D~~~a~~~~~Ka~~~~~~~---------~----~~~lkl--~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~ 209 (354)
.--.+.+|+..+...+.+++...... . ..++.+ ..++..|++....+++-+=-+++..+-..|..
T Consensus 12 ~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d 91 (274)
T 4b4t_T 12 SIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS 91 (274)
T ss_dssp -------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 33445678888888888776533211 1 123333 57888999999999988888888877766531
Q ss_pred hcCCcCCC-HHHHHHHHHHHHHHHHhcCCCcchHHHHHhhhhc-cccccccchH---HHHHHHHHHhcChhhHHHHHHhh
Q 018521 210 QIGDETID-EEALEQALSAAVTCTILAAAGPQRSRVLATLYKD-ERCSKLKIYP---ILQKVYLERILRKPEIDAFAEEL 284 (354)
Q Consensus 210 ~~~~~~~d-~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~kd-~r~~~lp~~~---~L~k~f~~~li~~~~i~~f~~~L 284 (354)
+....+ .......+.+-++|.+.....++-...|..+-.. +...+-|..+ .|.+.+++ ..-.+|-+.+
T Consensus 92 --~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~e-----GnY~kff~l~ 164 (274)
T 4b4t_T 92 --NNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLME-----GSYQKAWDLL 164 (274)
T ss_dssp --TSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHH-----TCSHHHHHHH
T ss_pred --hhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHc-----CCHHHHHHHH
Confidence 011111 2234466776777776655555555556555432 1222223222 22222221 1112222222
Q ss_pred chhhhccCCC---c--HHHHHHHHHHHHHHHHhhccccccHHHHHHHhCC-ChHHHHHHHHh
Q 018521 285 KPHQKALLPD---N--FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASR 340 (354)
Q Consensus 285 ~~h~~~~~~d---g--~~~L~~~viEHNi~~isk~Y~~Itl~~La~LL~l-s~~eaE~~ls~ 340 (354)
+. ...+. + ...|-.+|+..-+..+.|.|.+|+++.++++|++ +++++.+++.+
T Consensus 165 ~~---~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 165 QS---GSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp HT---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred hc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 11 10011 1 4677889999999999999999999999999999 56777776654
No 153
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.47 E-value=2.5 Score=40.04 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhccc-cc--ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc-
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGI-DL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ- 171 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i-~v--Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~- 171 (354)
+.+-..||.+|...|++++|.+.++.- .+ +..+ .-....-+..|-....+|...|++..|..+++|+..+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 556677999999999999998888632 11 1111 111223356777889999999999999999999976643221
Q ss_pred --hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 172 --QEVLN-LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 172 --~~~lk-l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+++.- .....-.+.+....++|.+|-.+|......
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 11111 111122234445567899999988888764
No 154
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=85.85 E-value=3.4 Score=31.40 Aligned_cols=72 Identities=11% Similarity=-0.076 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhccccc-ccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDL-DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~v-Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
.-+..|+..+...|+|..|..-+...-- .... ......+.+++......|...||+..|..+.+++.....+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~-~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc-CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4467899999999999999988875311 0000 0012356788889999999999999999999999877654
No 155
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.78 E-value=0.7 Score=43.28 Aligned_cols=106 Identities=8% Similarity=-0.107 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhccc-ccccCCc---cCC------hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMR---VID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i-~vEt~~~---~~~------~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~ 164 (354)
.+.....++..+...|+|.+|...+... ....... ... ...+...++....+|+..++|..|..+++++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666778899999999999999988752 1111000 000 01122588999999999999999999999998
Q ss_pred chhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 165 ~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
....+ +. ..+...|..+...++|-+|-..|......
T Consensus 258 ~~~p~--~~----~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEEEK--NP----KALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHCTT--CH----HHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76442 22 34556788899999999999998888664
No 156
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.69 E-value=9.5 Score=37.19 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=75.4
Q ss_pred HHHccCHHHHHHHhcccccccCCccCC--hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc---CCchHHHHHHHH
Q 018521 106 YESEQQWSKAAQMLSGIDLDSGMRVID--DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLNLQYK 180 (354)
Q Consensus 106 ~E~~gd~~eAa~iL~~i~vEt~~~~~~--~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~---~~~~~~lkl~y~ 180 (354)
+..+|+|++|........ +...+.++ --.-+..+-..+.+|...|+|.+|..+..|+..... ...+|++-..|
T Consensus 297 ~~~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l- 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV- 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-
T ss_pred HHhhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH-
Confidence 446789999988876432 22222333 245688889999999999999999999999987654 34577765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 181 VCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 181 ~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.-.|.+|...++|.+|-..|.+......
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4568889999999999999988887543
No 157
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=85.53 E-value=13 Score=30.13 Aligned_cols=63 Identities=11% Similarity=-0.019 Sum_probs=49.6
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~ 168 (354)
...+|..+...|++++|...+...-- . +..-.+.+....++++..|++..|..+++++.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~------~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD------E-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH------H-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------H-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 35678899999999999999985321 1 112257788889999999999999999999876644
No 158
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=85.28 E-value=1.2 Score=33.30 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=33.3
Q ss_pred hhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 312 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 312 sk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-+-..++++++||+.||+|+.-+...+..+...|.+.
T Consensus 11 L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 11 LALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456789999999999999999999999999999873
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=85.24 E-value=3.8 Score=39.95 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
....+.+...+|.+|...|++++|...+...-- +++ .-...+....+.|+..+++..|..+++|+..+...
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-- 383 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALG------LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-- 383 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 334567888999999999999999998875321 111 12567888999999999999999999999887543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 018521 172 QEVLNLQYKVCYARILDLKRKFLEAALR-YYDISQ 205 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~~r~fleAa~~-y~e~~~ 205 (354)
+.. .+...+.++...+++.++.+. |..++.
T Consensus 384 ~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 384 NKA----ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp --C----HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 334556677777777776654 333343
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=85.12 E-value=5.3 Score=31.99 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc------h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ------Q------EVLNLQYKVCYARILDLKRKFLEAALRYYD 202 (354)
Q Consensus 135 eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~------~------~~lkl~y~~~~~r~~~~~r~fleAa~~y~e 202 (354)
...+.+......++..++|..|..++.++........ + .......+...|..+...++|-+|-..|..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4577888999999999999999999999988743211 1 234556777789999999999999999999
Q ss_pred HHhh
Q 018521 203 ISQI 206 (354)
Q Consensus 203 ~~~t 206 (354)
+...
T Consensus 89 al~~ 92 (162)
T 3rkv_A 89 VLKR 92 (162)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=84.97 E-value=2.5 Score=30.63 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhcc-CCHHHHHHHHHHhhchhc
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVS 168 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~-~D~~~a~~~~~Ka~~~~~ 168 (354)
.....+|.++...|++++|...+...-- -. +.....+.+.....+|... +++..|..+++++.....
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVIN-VI----EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TS----CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-hC----cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 4567899999999999999999875421 11 1112356888999999999 999999999999987654
No 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=84.96 E-value=7.8 Score=27.02 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~ 168 (354)
.+.....+|..+...|++++|...+...--- .+ .-...+.....+|...+++..|..+++++.....
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3456778999999999999999988753211 11 1146788889999999999999999999987754
No 163
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.81 E-value=7.2 Score=35.78 Aligned_cols=96 Identities=13% Similarity=-0.028 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....++.++...|++++|...+....-- ++ .-.+.+.....++...+++..|...++++.....+ ++
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~---- 237 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL------DP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN--HA---- 237 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--CH----
Confidence 3445566666666666666655532110 00 11345555666666666666666666666554332 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|..+...++|-+|-..|......
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345566677777777777777766653
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.59 E-value=6.2 Score=30.17 Aligned_cols=71 Identities=10% Similarity=-0.143 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 134 ~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
....+.+....+.+...+++..|..+++++..... +.......+...|..+...++|-+|...|.......
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 34578899999999999999999999999987643 233345677788999999999999999999888753
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=84.56 E-value=3.7 Score=32.09 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhccc-ccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchh
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i-~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~ 167 (354)
.+...+|.+|...|++++|...+... .+.... ..........+......|...+|+..|..+++|+....
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35567899999999999998877642 121111 11234456788899999999999999999999987653
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=84.10 E-value=3.9 Score=40.53 Aligned_cols=99 Identities=11% Similarity=-0.018 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....||.+|...|++++|.+.+...--- ++ .-.+.+.....+|...+++..|..+++++.....+ ++
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~-- 125 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDA------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EP-- 125 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--
Confidence 456688999999999999999998853211 11 11567888899999999999999999999887543 23
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLK---RKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~---r~fleAa~~y~e~~~t~ 207 (354)
..+...|.++... +++-+|...|.+.....
T Consensus 126 --~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 126 --YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp --HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 2345667888888 99999999999988754
No 167
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=83.91 E-value=2.9 Score=31.16 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+.....+|...+++..|..+++++.....+ ++. .+...|.++...++|-+|...|.......
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457888899999999999999999999887654 222 55678999999999999999999888753
No 168
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=83.88 E-value=1.4 Score=33.90 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=34.0
Q ss_pred HhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 311 ASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 311 isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+-+-...+++++||+.||+|+.-+...+..+...|.+.
T Consensus 10 ~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 10 MLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 33456789999999999999999999999999999874
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=83.47 E-value=5.5 Score=33.12 Aligned_cols=72 Identities=7% Similarity=0.084 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ----------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 136 Kle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~----------~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
..+.+......++..++|..|..+++++........ ...+....+...|..+...++|-+|-..|.....
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 467888999999999999999999999987765433 1233456777889999999999999999998887
Q ss_pred hh
Q 018521 206 IQ 207 (354)
Q Consensus 206 t~ 207 (354)
..
T Consensus 117 ~~ 118 (198)
T 2fbn_A 117 ID 118 (198)
T ss_dssp HS
T ss_pred hC
Confidence 53
No 170
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=83.43 E-value=11 Score=33.69 Aligned_cols=99 Identities=14% Similarity=-0.004 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......||.++...|++++|...+..+.-.. ++. ....+.....+...++...|...++++.....+ +++
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~- 220 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----QDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAA- 220 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----CSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHH-
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----cch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHH-
Confidence 4577889999999999999999999764211 111 122333333355667777788888888776553 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+...|..+...++|-+|-..|.++....
T Consensus 221 ---~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 221 ---LATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 33456889999999999999999999864
No 171
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=83.21 E-value=4.9 Score=29.04 Aligned_cols=63 Identities=14% Similarity=-0.052 Sum_probs=48.9
Q ss_pred HHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHH-HHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLS-KCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 100 ~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle-~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
...|..+...|++++|...+...--. .+.. .. .+.....+|...+++..|..++.++.....+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999854211 1111 24 7888899999999999999999999887654
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=83.19 E-value=3.9 Score=31.04 Aligned_cols=70 Identities=11% Similarity=-0.024 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
.........|+.+|...|++++|...+...--. .+.. .+.+.....++...|++..|..+++++.....+
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNH-QALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 445677889999999999999999999854211 1111 567888899999999999999999999887654
No 173
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=83.05 E-value=2.5 Score=34.72 Aligned_cols=100 Identities=16% Similarity=0.049 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhh-ccCCHHHHHHHHHHhhchhcCC
Q 018521 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 92 E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L-~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
.-........+|.++...|++++|...+..+.-.. . +. . +......+.+ ...+...|...++++.....+
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~- 106 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DN--S--YKSLIAKLELHQQAAESPELKRLEQELAANPD- 106 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CH--H--HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-Ch--H--HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-
Confidence 33446678889999999999999999998653211 1 11 1 1111112211 112223355666666655432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
+++ .+...|.++...++|-+|-..|.++..
T Consensus 107 -~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 107 -NFE----LACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CHH----HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 233456667777777777777766554
No 174
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.93 E-value=11 Score=27.64 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 133 ~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+......+......+...+++..|..+++++...... + ...+...|.++...++|.+|...|.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--N----AVYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 4556789999999999999999999999999876543 2 2355677888999999999999999888753
No 175
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=82.87 E-value=10 Score=28.15 Aligned_cols=71 Identities=10% Similarity=-0.113 Sum_probs=57.7
Q ss_pred CChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 131 ~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+......-+......+...+|+..|..+++++...... + ...+...|.++...++|-+|-..|.......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--D----AKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--C----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 345667888899999999999999999999999876543 2 2455677888999999999999998888753
No 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=82.80 E-value=3.7 Score=38.76 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=62.6
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHh-hccCCHHHHHHHHHHhhchhcCCchHHHH-
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY-LEDDDAVNAEAFINKASFLVSSSQQEVLN- 176 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~-L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk- 176 (354)
...+|.+|...|++++|...++..- + ...++..+..++.....++ ...+++..|..+++|+..+..+..++.-.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~ 412 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEF-S---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK 412 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-H---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHH-h---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3468999999999999999887431 1 1234556656666655554 36789999999999987665443221100
Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 177 -----------------LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 177 -----------------l~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...+...|.++...++|-+|-.+|......
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123456788999999999999999888775
No 177
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.41 E-value=2.7 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHhhccc---cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 305 EHNLLSASKLYT---NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 305 EHNi~~isk~Y~---~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+..|+.+-+-.. .+|..+||+.||+|...+...+.+|..+|.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 333444444445 89999999999999999999999999999985
No 178
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.36 E-value=3.3 Score=35.67 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~---~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+=.++++++-.++.+.|..|+...+++.......+ .+..+.....+.|..+-++++|-.|...|.......
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999887765433 377888889999999999999999999999987754
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=81.02 E-value=4.7 Score=38.24 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
.....+.+...+|.+|...|++++|...+...-- ++ ......+.....+|...+++..|..+++++..+..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~- 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE------ID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE- 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH------hC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 4555678889999999999999999998874321 11 123567888899999999999999999999887653
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALR 199 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~ 199 (354)
+++ .+...+.++...+++.++.+.
T Consensus 340 -~~~----~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 340 -DKA----IQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -CHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred -CHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333 233445556666666665543
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=80.91 E-value=3.9 Score=35.74 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc----cCCHHHHHHHHHHhhchhcCCc
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~----~~D~~~a~~~~~Ka~~~~~~~~ 171 (354)
+.....++.+|...|++++|...+...- + .+ -...+.....+|.. .+|+.+|..+++|+...-
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~-~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKAC-D-LK-------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-TT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHH-H-CC-------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----
Confidence 3455678888888899999988887432 1 11 12456677888888 889999998888887652
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018521 172 QEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~~ 205 (354)
++ ......|.++.. .++|.+|-..|.....
T Consensus 73 ~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 73 YS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 22 233356777777 7788887777776655
No 181
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=80.36 E-value=10 Score=27.58 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 132 ~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
++......+....+.+...+++..|..+++++...... ++ ......|.++...++|-+|...|.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34445678889999999999999999999999876432 22 34556788888899999999988888775
No 182
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=79.96 E-value=10 Score=28.79 Aligned_cols=66 Identities=9% Similarity=-0.100 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 136 Kle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+.+......++..+||..|..+++++...... ++ .++...|.++...++|-+|...|.......
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VA----VYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999887543 22 456677899999999999999999888753
No 183
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=79.91 E-value=9.5 Score=27.40 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=50.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 141 VQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 141 l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
+...+.++..+++..|...++++...... ++. ..+...|.++...++|-+|...|.......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45678899999999999999999877543 222 255677899999999999999999998864
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=78.75 E-value=0.7 Score=45.66 Aligned_cols=63 Identities=16% Similarity=-0.109 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~ 205 (354)
...+......|...+++..|..+++++.....+ +. ..+...|.++...++|-+|-..|.+...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YI----KGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555444221 11 1223345555555555555555555544
No 185
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=78.49 E-value=6 Score=35.84 Aligned_cols=95 Identities=13% Similarity=-0.008 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
......+|.++...|++++|.+.+..+--+.. .+ ....+++....++...|++..|...+++ .++++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~---~P--~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~- 131 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSV---DV--TNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLE- 131 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC---CC--SCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHH-
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc---CC--CCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHH-
Confidence 34556799999999999999999986532210 01 1235688889999999999999999998 23443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
.+...|.++...+++-+|-+.|..+...
T Consensus 132 ---~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 132 ---CMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3445688899999999999999998875
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=77.70 E-value=7.8 Score=28.10 Aligned_cols=65 Identities=8% Similarity=-0.142 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.+.+......+...++|..|..+++++...... ++ ..+...|..+...++|-+|-..|.......
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 567888899999999999999999999887543 22 345677899999999999999999988753
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.42 E-value=6.3 Score=29.47 Aligned_cols=64 Identities=9% Similarity=-0.062 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 138 e~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
..+.....+|...+++..|..+++++...... +. ..+...|.++...++|-+|...|.......
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YS----VAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57888899999999999999999999877543 22 244577999999999999999999888754
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=77.28 E-value=20 Score=30.21 Aligned_cols=116 Identities=13% Similarity=-0.011 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhccc-ccccC---CccCC-hhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchh
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSG---MRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i-~vEt~---~~~~~-~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~ 167 (354)
++-+..-..++..+...|++++|....... .+... ....+ .......|......+...++|..|-..++|+..++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344555667788888888888888766532 11110 00111 11234589999999999999999999999999872
Q ss_pred cC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018521 168 SS-----SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (354)
Q Consensus 168 ~~-----~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~ 208 (354)
.. .++...-++=+...|..+..-++|-+|-.+|.......+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 21 112211111114568889999999999999999988643
No 189
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=76.64 E-value=6.7 Score=34.14 Aligned_cols=92 Identities=21% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc----cCCHHHHHHHHHHhhchhc
Q 018521 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 97 ~l~~~LA~i~E~----~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~----~~D~~~a~~~~~Ka~~~~~ 168 (354)
.....|+.+|.. .|++++|...+...- + .+ -.+.+.....+|.. .+|+.+|..+++|+...-
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~-----~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-D-----LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-H-----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-H-----CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence 345678999999 999999999887431 1 11 24577778889999 999999999999997652
Q ss_pred CCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018521 169 SSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (354)
Q Consensus 169 ~~~~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~~ 205 (354)
+++ -....|.++.. .++|.+|-..|.....
T Consensus 109 ---~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 109 ---YAE----GCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp ---CHH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred ---Ccc----HHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 332 33456777777 7888888888887776
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=76.21 E-value=43 Score=30.80 Aligned_cols=102 Identities=12% Similarity=-0.025 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl 177 (354)
....++.++.+.|+|.+|...+... .. --+.....+.++..-+.+-..|++..|..++.++..-.. +|....
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a----~~-~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~---~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSA----GK-WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA---GEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTG----GG-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT---TTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----hc-cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CccccH
Confidence 6688889999999999999999732 21 112333455677778889999999999999999973221 132222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 178 QYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 178 ~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-..+.|..+...+++-+|...|.++....
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 233567888999999999999999999863
No 191
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=75.63 E-value=6 Score=29.99 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 138 e~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~-~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+-|+.+.+.+...+||.+|...+.+|......... ..-+...+...|..+...++|.+|-..|.++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46789999999999999999999999887643211 1123355677788899999999999988888764
No 192
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=75.53 E-value=3.6 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++..+||+.||+|...+.+.+..|..+|-|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 3599999999999999999999999999998754
No 193
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=75.26 E-value=13 Score=38.02 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=69.6
Q ss_pred HHccCHHHHHHHhcccc---cccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHH
Q 018521 107 ESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCY 183 (354)
Q Consensus 107 E~~gd~~eAa~iL~~i~---vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~ 183 (354)
...|++++|.+.+.... .+..+ . ....-.+.++...+.|+..+++..|...++++.....+ ++ ..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~-~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADG-V-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RW----RLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CH----HHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccc-c-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hH----HHHHHH
Confidence 67899999999887543 00000 0 01122468889999999999999999999999887553 33 345577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 184 ARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 184 ~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
|.++...++|-+|-..|..+....
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF 497 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 889999999999999999998853
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=75.18 E-value=4.4 Score=39.86 Aligned_cols=95 Identities=9% Similarity=-0.100 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....+|..|...|++++|...+...-- +++ .-...+.....+|...+++..|..+++++.....+ +++.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~ 110 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIE------LDK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDA 110 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------SCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 56778899999999999999998874321 111 12457888899999999999999999999887543 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYY 201 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~ 201 (354)
.+..-.+..+...++|.+|-..|.
T Consensus 111 --~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 --KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --HHHHHHHHHHHHHHHHCCC-----
T ss_pred --HHHHHHHHHHHHHHHHHHHhcccc
Confidence 222222333777899999988877
No 195
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=73.67 E-value=17 Score=29.56 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 135 eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-.+.+......+...|++..|..+++++...... ++ .++...|.++...++|-+|-.+|.......
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NV----DYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 34678888999999999999999999999887553 33 366678999999999999999999998864
No 196
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=72.50 E-value=16 Score=34.77 Aligned_cols=103 Identities=7% Similarity=-0.043 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCC-HHHHHHHHHHhhchhcC
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD-AVNAEAFINKASFLVSS 169 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D-~~~a~~~~~Ka~~~~~~ 169 (354)
+...-+.....++.++...|++++|...+...-- +.+ .-...|.....++...++ +..|...++++..+..+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~------l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~ 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE------LNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH------hCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC
Confidence 3344455666777777888888888877764321 011 113456666667777774 88887777777766543
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 170 ~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+. ..+...|.++...++|-+|-..|..+...
T Consensus 165 --~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 165 --NY----QVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp --CH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred --CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22 23344566666667777777777766654
No 197
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=71.99 E-value=17 Score=32.54 Aligned_cols=83 Identities=7% Similarity=-0.002 Sum_probs=57.7
Q ss_pred HHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHH
Q 018521 113 SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRK 192 (354)
Q Consensus 113 ~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~ 192 (354)
++|..++..-- + .+. ..-..+|..-+.++...+++..|..+++|+...... +++. .+...|.++...++
T Consensus 81 ~~A~~~~~rAl-~----~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~---~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAI-S----TLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTL---VYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHH-T----TTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-H----HhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--CccH---HHHHHHHHHHHhcC
Confidence 77877776311 1 011 122468888899999999999999999999886543 2221 34455777777888
Q ss_pred HHHHHHHHHHHHhh
Q 018521 193 FLEAALRYYDISQI 206 (354)
Q Consensus 193 fleAa~~y~e~~~t 206 (354)
+-+|-..|......
T Consensus 150 ~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 150 IKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888877764
No 198
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=71.67 E-value=12 Score=28.86 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
...++.....++..+++..|...++++.....+ ++ ..+...|.++...++|-+|-..|......
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE--RE----EAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678889999999999999999999887553 33 24457789999999999999999988875
No 199
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=71.02 E-value=7.2 Score=28.98 Aligned_cols=32 Identities=3% Similarity=0.060 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|+.+||+.||+|+.-+...+..+...|.|.
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 49999999999999999999999999999884
No 200
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=69.85 E-value=73 Score=29.79 Aligned_cols=126 Identities=10% Similarity=0.022 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 90 ~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
+.|+=..++...|-+++. .||++||...+.++++.. ..-++.-+.+-.+++.++-.+ ..+-+.-..
T Consensus 6 s~ee~~k~~~~ll~Ey~~-~~d~~Ea~~ci~el~~p~--------~~~~~v~~~i~~~le~~~~~r--e~~~~Ll~~--- 71 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLH-LNDMKEAVQCVQELASPS--------LLFIFVRHGVESTLERSAIAR--EHMGQLLHQ--- 71 (339)
T ss_dssp HHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHTTCCGG--------GHHHHHHHHHHHHTTTCHHHH--HHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHcCCcc--------cHHHHHHHHHHHHhCCCHHHH--HHHHHHHHH---
Confidence 444445555555555554 489999999999887543 234666667777777664222 111111110
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHHHHhcCCCcchHHHHHhhh
Q 018521 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (354)
Q Consensus 170 ~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~~ILa~~~~~rs~lL~~l~ 249 (354)
+.-.-.....+|..+..++.+...-- .+|-......|...+--++.... ..-++++..+.
T Consensus 72 ------------L~~~~~is~~~~~~Gf~~~~~~l~Dl-------~lDiP~a~~~La~~v~~~i~~g~-l~~~~l~~~~~ 131 (339)
T 1ug3_A 72 ------------LLCAGHLSTAQYYQGLYEILELAEDM-------EIDIPHVWLYLAELVTPILQEGG-VPMGELFREIT 131 (339)
T ss_dssp ------------HHHTTSSCHHHHHHHHHHHHHHHHHH-------TTTCTTHHHHHHHHHGGGGSTTS-CCHHHHHHHHT
T ss_pred ------------HHHCCCCCHHHHHHHHHHHHhhChHh-------hcCccchHHHHHHHHHHHHHCCC-CCHHHHHHHHH
Confidence 11111234456667777777776632 34544444666555444444332 33345555554
No 201
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=69.31 E-value=18 Score=29.30 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=46.4
Q ss_pred HHHHHhhchhhhccCCCcHHHHHHHHHHHHHHHHhhc--cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 278 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKL--YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 278 ~~f~~~L~~h~~~~~~dg~~~L~~~viEHNi~~isk~--Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
..|++.|++|.+.. .+..++.+-.. -..+|..+||+.+|+++.-+=..+.+|+..|-+.=.-|
T Consensus 22 ~~~~~~l~~~gLt~------------~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 22 GEVDAVVKPYGLTF------------ARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp HHHHHHHGGGTCCH------------HHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 45777888775432 24554443322 34599999999999999999999999999998864433
No 202
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=68.25 E-value=12 Score=36.86 Aligned_cols=114 Identities=12% Similarity=-0.020 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCC
Q 018521 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (354)
Q Consensus 91 ~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~ 170 (354)
-++-+-+--.+||+.+.+.|+|.|||-+|. ++.+..+ .++..-+......- -+=..-.+.+-+.++++|...+.++
T Consensus 30 ~~el~i~~l~~L~~~h~~~~ny~EAa~~l~-lhA~l~~--w~~~~~~~~~~~~~-~~~~qt~~~~ke~L~~~~i~~f~kg 105 (436)
T 2yin_A 30 REEMYIRYLYKLRDLHLDCDNYTEAAYTLL-LHTWLLK--WSDEQCASQVMQTG-QQHPQTHRQLKETLYETIIGYFDKG 105 (436)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTTCC--SSCCC---------------CHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCcCHHHHHHHHH-HHHHHhC--CCccccCcccccCC-CCccccHHHHHHHHHHHHHHHHHhc
Confidence 356677778999999999999999999983 2222222 11111110000000 0001112334455677777777777
Q ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q 018521 171 QQEVLNLQYKVCYARILDLK-RKFLEAALRYYDISQIQK 208 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~-r~fleAa~~y~e~~~t~~ 208 (354)
+.|+.-+..+...+.+|-+. ++|...|..+..+...+.
T Consensus 106 ~~~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y~ 144 (436)
T 2yin_A 106 KMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYE 144 (436)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78887777777777778776 888888877776665543
No 203
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=67.76 E-value=5.4 Score=37.05 Aligned_cols=97 Identities=8% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHH
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lk 176 (354)
.+...+|.+|...|+|++|...+...-- +++ .-...+....+.|...+++..|..+++++..+... ++...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~ 301 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLT------EEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIR 301 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH------HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHH
Confidence 4678899999999999999998874321 111 12467888999999999999999999999877543 33322
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 018521 177 LQYKVCYARILDLK-RKFLEAALRYYDISQI 206 (354)
Q Consensus 177 l~y~~~~~r~~~~~-r~fleAa~~y~e~~~t 206 (354)
...+++.... +.+..+-..|..++..
T Consensus 302 ----~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 ----RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2233443333 3344444555555554
No 204
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=65.98 E-value=17 Score=32.56 Aligned_cols=100 Identities=12% Similarity=0.005 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
..+...++.+++..|++++|..++...-- . .+..--.+|..-+.++...+++..|..+++|+...... ++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~ 170 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHV 170 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-S-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHH
Confidence 34778899999999999999999875421 1 11100027888899999999999999999999876442 2222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARILDL-KRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~~~~-~r~fleAa~~y~e~~~t~ 207 (354)
+...+.+... .+++.+|-..|.......
T Consensus 171 ----~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 171 ----YVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp ----HHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2222333222 477888888888877764
No 205
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=65.63 E-value=13 Score=30.22 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=32.8
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
-..++++.+||+.+|+|+.-+-..+.+|...|-+..
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 346899999999999999999999999999998863
No 206
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=63.66 E-value=12 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=32.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
-.++++.+||+.+|+|+.-+-..+.+|..+|.+.+
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 36899999999999999999999999999998864
No 207
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.61 E-value=13 Score=27.10 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
..+|..+||+.||+|..-+-..+..|..+|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 469999999999999999999999999999886
No 208
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=63.12 E-value=16 Score=34.74 Aligned_cols=99 Identities=8% Similarity=-0.091 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHH
Q 018521 96 LIIREKLADLYESEQQ-WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd-~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~ 174 (354)
+.....++.++...|+ +++|...+...--- .+ .-...|.....++...+++..|...++|+..+-.+ +.
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--~~- 200 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--NY- 200 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH------CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--CH-
Confidence 4566788999999996 99999988753211 11 12467888888999999999999999999887553 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 175 lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
.-+...|.++...++|-+|-..|.......
T Consensus 201 ---~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 201 ---HAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp ---HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 234566788888899999999999888753
No 209
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=62.60 E-value=15 Score=30.44 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=32.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++++.+||+.+|+|+.-+-..+.+|...|-+.+
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 45789999999999999999999999999998853
No 210
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.21 E-value=13 Score=31.80 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHh
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY 147 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~ 147 (354)
-+.++.++|..|.+.|++++|..+|++||...- + .++-+-.+|||
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t------~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--T------PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--C------HHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--C------HHHHHHHHHHh
Confidence 456899999999999999999999999987532 2 23444556665
No 211
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=62.00 E-value=14 Score=30.05 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=32.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
-.+++..+||+.+|+|+.-+-..+.+|..+|.+..
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 36899999999999999999999999999998853
No 212
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=61.62 E-value=12 Score=30.56 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=35.4
Q ss_pred HHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 306 HNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
|-+..+++.... |.++||+.+|+|+..+++++.+|...|-+..
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 444445555556 9999999999999999999999999998754
No 213
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=61.25 E-value=9.4 Score=39.21 Aligned_cols=97 Identities=13% Similarity=-0.023 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
+.....+|..|...|++++|...+...--.. ..-.+.+.....+|+..+++..|...++|+..+..+ ++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~-- 501 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--EL-- 501 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CS--
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch--
Confidence 3467788999999999999999987532111 112467888899999999999999999999888654 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 176 kl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
..+...|.++...++|-+ -..|..+...
T Consensus 502 --~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 502 --APKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp --HHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 233466777888888888 7777777664
No 214
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.55 E-value=18 Score=28.71 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++.++||+.+|+|+..+.+.+..|...|-+..
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 4689999999999999999999999999998754
No 215
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=59.50 E-value=46 Score=26.41 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=56.6
Q ss_pred HccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHH-
Q 018521 108 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARI- 186 (354)
Q Consensus 108 ~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~- 186 (354)
..|++++|...+...--... .-.+.+....++|...+++..|..+++++...... ++ ..+...|.+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~l 88 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NA----ELYAALATVL 88 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CH----HHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHH
Confidence 45666666666653211100 11368888999999999999999999999887654 22 244456666
Q ss_pred HHHHHHH--HHHHHHHHHHHhh
Q 018521 187 LDLKRKF--LEAALRYYDISQI 206 (354)
Q Consensus 187 ~~~~r~f--leAa~~y~e~~~t 206 (354)
+...++| -+|-..|......
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHh
Confidence 6677888 8888888877765
No 216
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.41 E-value=21 Score=28.99 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=31.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.++++.+||+.+|+|+.-+-..+.+|...|-+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999999999884
No 217
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=57.16 E-value=48 Score=32.05 Aligned_cols=100 Identities=8% Similarity=-0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHH-------ccCHH-------HHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHH
Q 018521 96 LIIREKLADLYES-------EQQWS-------KAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFIN 161 (354)
Q Consensus 96 a~l~~~LA~i~E~-------~gd~~-------eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~ 161 (354)
..+...++.+++. .|+++ +|..++..-- + ... .....+|+.-+.++...+++.+|...++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~----~~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-S----TLL-KKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-T----TTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-H----HhC-cccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3566778888876 78987 8888887321 1 011 1235688888999999999999999999
Q ss_pred HhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 162 KASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 162 Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
|+...... ++. ..+..++.++...+++-+|-..|......
T Consensus 346 ~al~~~p~--~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 346 RLLAIEDI--DPT---LVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHSSSS--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCcccc--Cch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99876443 221 24455566677777888887777777664
No 218
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.71 E-value=20 Score=39.38 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHhccccc--ccCCccCChhH--------------HHHHHHHHHHHhhccCCHHHHHHHHH
Q 018521 98 IREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTF--------------RLSKCVQIARLYLEDDDAVNAEAFIN 161 (354)
Q Consensus 98 l~~~LA~i~E~~gd~~eAa~iL~~i~v--Et~~~~~~~~e--------------Kle~~l~i~rL~L~~~D~~~a~~~~~ 161 (354)
.+..+|.+|...|++++|+..++.--. ........... ...+|+++++|+=..+-+..+-.+.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 458899999999999999999975421 11110111100 13689999999999999999988888
Q ss_pred HhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHH
Q 018521 162 KASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTC 231 (354)
Q Consensus 162 Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~ 231 (354)
.|..... .++++++..++...-+.+..-++|-+|...-. ..+ |++-+..||+..|..
T Consensus 924 lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~---~~p---------d~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 924 LADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALM---VLS---------TTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH---HHH---------HSSSCHHHHHHHHHH
T ss_pred HHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH---hCC---------CHHHHHHHHHHHHHH
Confidence 8866543 34666665555556666777777777744443 322 122356788887653
No 219
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=56.29 E-value=21 Score=30.03 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=31.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.++++.+||+.+|+|+.-+-..+.+|..+|-+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3579999999999999999999999999999885
No 220
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=56.00 E-value=15 Score=31.10 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=32.6
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
--.++++.+||+.+|+|+.-+-..+.+|..+|.|.+
T Consensus 38 ~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 38 NDGKAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 346899999999999999999999999999998753
No 221
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=55.55 E-value=22 Score=30.09 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccC----CHHHHHHHHHHhhchhcCCc
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD----DAVNAEAFINKASFLVSSSQ 171 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~----D~~~a~~~~~Ka~~~~~~~~ 171 (354)
+.....|+.+|...||+++|...+...- +.+ -.+-+.....+|.. + |+.+|..++.|+... +
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g--------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAA-AQG--------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----G 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT--------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcC--------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----C
Confidence 4566789999999999999999998431 111 13456677788888 7 999999999999543 2
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018521 172 QEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (354)
Q Consensus 172 ~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~~ 205 (354)
++.- ....|.++.. .+++.+|-..|.....
T Consensus 84 ~~~a----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 84 SKSG----EIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp CHHH----HHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred CHHH----HHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 3332 2234666655 6788888777777665
No 222
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=55.47 E-value=13 Score=27.87 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=31.3
Q ss_pred hccccccHHHHHHHh-CCChHHHHHHHHhhHhcCCee
Q 018521 313 KLYTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 313 k~Y~~Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~ 348 (354)
+.=+.-.|..++++| +..+-++.+.+..||.+|+|.
T Consensus 17 ~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 344566689999999 999999999999999999983
No 223
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=55.36 E-value=23 Score=26.21 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=32.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|...|-+...
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 356999999999999999999999999999988654
No 224
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.06 E-value=48 Score=25.82 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=34.7
Q ss_pred hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 313 k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
.....++..+||+.+|+++.-+-..+.+|+..|-+.-.-
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 456789999999999999999999999999999886544
No 225
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=54.77 E-value=23 Score=28.05 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=32.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...+|..+||+.+|+++.-+=..+.+|+..|-+.-.-
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 3469999999999999999999999999999886443
No 226
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=54.27 E-value=19 Score=29.88 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=32.8
Q ss_pred hhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 312 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 312 sk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-+-=.++++.+||+.+|+|+..+-.-+.+|..+|.+.
T Consensus 12 L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 12 LQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 3344678999999999999999999999999999875
No 227
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=53.85 E-value=16 Score=29.83 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=31.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.++++.+||+.+|+|+.-+-..+.+|...|.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 3689999999999999999999999999999874
No 228
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=52.73 E-value=35 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=33.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+=..+.+|+..|-+.-.-
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3679999999999999999999999999999886554
No 229
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=51.69 E-value=1e+02 Score=35.20 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhch
Q 018521 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (354)
Q Consensus 101 ~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~ 166 (354)
.+|+.++++|+|++|...... ...|.+.++.+...+++..|-...+||+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~k---------------A~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNN---------------VSNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHh---------------hhHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 589999999999999988874 248999999999999999999999999654
No 230
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=51.55 E-value=26 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=35.3
Q ss_pred HHHHHHhhcc--ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 306 HNLLSASKLY--TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 306 HNi~~isk~Y--~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
|-+..++... ..+|.++||+.+|+|+..+++++.+|...|-+..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s 60 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRS 60 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEe
Confidence 3344444433 3599999999999999999999999999998764
No 231
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=51.22 E-value=19 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=31.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
-.++++.+||+.+|+|+.-+-..+.+|..+|-+..
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 35789999999999999999999999999998753
No 232
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=51.15 E-value=50 Score=25.78 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=32.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..++...||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 579999999999999999999999999999886543
No 233
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=51.11 E-value=42 Score=28.22 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc----cCCHHHHHHHHHHhhchh
Q 018521 96 LIIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLV 167 (354)
Q Consensus 96 a~l~~~LA~i~E~----~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~----~~D~~~a~~~~~Ka~~~~ 167 (354)
......|+.+|.. .+|+.+|...+...- +. + +...-.+-+.....+|.. .+|+.+|..+++|+...
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~-~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~- 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RD-S---ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL- 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SS-T---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-Hc-C---CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-
Confidence 4456789999988 889999999988321 11 0 111235677788888888 89999999999999776
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Q 018521 168 SSSQQEVLNLQYKVCYARILDLK------RKFLEAALRYYDISQI 206 (354)
Q Consensus 168 ~~~~~~~lkl~y~~~~~r~~~~~------r~fleAa~~y~e~~~t 206 (354)
. +++.- ....|.+|... +++.+|...|......
T Consensus 159 ~--~~~~a----~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 S--RTGYA----EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp S--CTTHH----HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C--CCHHH----HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1 12221 12345555432 2677777777776664
No 234
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=50.40 E-value=1.9e+02 Score=28.28 Aligned_cols=170 Identities=12% Similarity=-0.029 Sum_probs=107.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCC-chhhhHHHHHHHHHHhcC---CC---hHHHHHHHHHHHHhhccccchHH
Q 018521 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGR---LE---PETQKEIANYTLAQIQPRVVSFE 92 (354)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~sr~~l~~~~~~l~~---l~---~~~~~~~~~~~l~~i~~~~i~~E 92 (354)
.|+..|+..-..++++.-..+++.+....+ |=+++ .+.++..... .. .....+.+..+++.+....+.-
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t---yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P- 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH---YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP- 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-
Confidence 367778777777888777777788776655 22222 3333333322 11 1122233334444332221111
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCch
Q 018521 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (354)
Q Consensus 93 ~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~ 172 (354)
....--.|-..|.+.|++++|.+++.++.-. | +.+ -...|--.+.-|...++...|..+.......-.. +|
T Consensus 104 --d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--g--~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd 174 (501)
T 4g26_A 104 --NEATFTNGARLAVAKDDPEMAFDMVKQMKAF--G--IQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PE 174 (501)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T--CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CC
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C--CCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CC
Confidence 1113356788899999999999999987532 1 111 2456888899999999999999999887654332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 173 ~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
. .-+..++..+...+++-+|...|.+.-..
T Consensus 175 ~----~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 175 E----PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 2 24567778888889999998888888664
No 235
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.14 E-value=32 Score=28.86 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=30.9
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
.+|.++||+.+|+|+..+++++.++...|-+..
T Consensus 44 ~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s 76 (159)
T 3lwf_A 44 PISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKS 76 (159)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE
Confidence 599999999999999999999999999998864
No 236
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.52 E-value=28 Score=28.10 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=32.4
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
--.++++.+||+.+|+|+.-+-..+.+|...|-+..
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 345799999999999999999999999999998754
No 237
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=48.79 E-value=15 Score=27.75 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=30.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 318 Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
+|..+||+.||+|...+-..+-+|..+|.+..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998854
No 238
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=48.43 E-value=40 Score=26.49 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=37.5
Q ss_pred HHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 305 EHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 305 EHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
|..++.+-.-...+|..+||+.+|+++.-+=..+.+|+..|-+.-.-
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 33443333345789999999999999999999999999999886543
No 239
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=47.41 E-value=17 Score=26.64 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhh-ccccccHHHHHHHhCCChHHHHHHHHhh
Q 018521 302 AMIEHNLLSASK-LYTNISFEELGTLLGIAPQKAEKIASRM 341 (354)
Q Consensus 302 ~viEHNi~~isk-~Y~~Itl~~La~LL~ls~~eaE~~ls~M 341 (354)
.|.++=|-.+-- =|=+.+++.++..||++++++|..+..+
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 333443333332 5778999999999999999999988654
No 240
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=47.08 E-value=36 Score=26.36 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=32.9
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999988654
No 241
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=46.68 E-value=43 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=33.7
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
....++..+||+.+|+++.-+-..+.+|+..|-+.-.-
T Consensus 51 ~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 51 LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 34579999999999999999999999999999886543
No 242
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.04 E-value=13 Score=30.40 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
..-+|.+.||+.+|+++.++.+.+.+++..|-|.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~ 82 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLF 82 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4557999999999999999999999999999775
No 243
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=45.83 E-value=54 Score=25.58 Aligned_cols=37 Identities=3% Similarity=-0.160 Sum_probs=33.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 7889999999999999999999999999999886543
No 244
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=45.52 E-value=44 Score=25.91 Aligned_cols=37 Identities=8% Similarity=-0.099 Sum_probs=33.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3569999999999999999999999999999886543
No 245
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=45.48 E-value=67 Score=30.99 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHH
Q 018521 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (354)
Q Consensus 96 a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~l 175 (354)
..+...++.+++..|++++|..++...- +. ++..-...|+.-++++...+++..|..+++++...... ++..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al-~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~ 392 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLL-AI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHV 392 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-Cc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHH
Confidence 5577888999999999999999988542 11 11111248888899998999999999999999775332 1111
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 018521 176 NLQYKVCYARI-LDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 176 kl~y~~~~~r~-~~~~r~fleAa~~y~e~~~t~ 207 (354)
+...+.+ +...+++-+|-..|.......
T Consensus 393 ----~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 393 ----YVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp ----HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 1122222 123567777777777777654
No 246
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.22 E-value=55 Score=28.94 Aligned_cols=64 Identities=9% Similarity=-0.107 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 137 le~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
.+.+......+...+++..|..+++++...... ++ .++...|..+...++|-+|-..|......
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VA----VYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356777889999999999999999999887543 22 45667889999999999999999888764
No 247
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=45.01 E-value=36 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..++..+||+.+|+++.-+-..+.+|+..|-+.-.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 47999999999999999999999999999988654
No 248
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=44.61 E-value=3.5e+02 Score=31.09 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCC-----ccCChhHHHHHHH
Q 018521 67 RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGM-----RVIDDTFRLSKCV 141 (354)
Q Consensus 67 ~l~~~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~-----~~~~~~eKle~~l 141 (354)
+-.++..++-+..--..+.--|+-=.-+.+.+...+.-+|-+.|+|++|+.++.+=+-+.+. ..++.....|+|-
T Consensus 1326 Ky~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyy 1405 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYY 1405 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHH
Confidence 33444444444443344433333234466778899999999999999999888764433222 1233445588999
Q ss_pred HHHHHhhccC---------------CHHHHHHHHHHhhch
Q 018521 142 QIARLYLEDD---------------DAVNAEAFINKASFL 166 (354)
Q Consensus 142 ~i~rL~L~~~---------------D~~~a~~~~~Ka~~~ 166 (354)
+-+..|++.+ |+.|+-..+.|...+
T Consensus 1406 kai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l 1445 (1630)
T 1xi4_A 1406 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL 1445 (1630)
T ss_pred HHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCCh
Confidence 9999999888 888888888776554
No 249
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=44.47 E-value=36 Score=26.70 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..+|..+||+.+|+++.-+-..+.+|+..|-+.-.-
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 689999999999999999999999999999886544
No 250
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=44.29 E-value=56 Score=31.19 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc----cCCHHHHHHHHHHhhc
Q 018521 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASF 165 (354)
Q Consensus 97 ~l~~~LA~i~E~----~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~----~~D~~~a~~~~~Ka~~ 165 (354)
.....|+.+|.. .+|+++|...+...- +. + -.+.+.....+|.. .+|+.+|..++.|+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~-~~-~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAA-EQ-G-------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT-T-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-HC-C-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 444556666666 666666666665321 11 1 12344445555655 5666666666666643
No 251
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.82 E-value=52 Score=24.89 Aligned_cols=44 Identities=7% Similarity=-0.038 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 303 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 303 viEHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
|+-+=|..++ +. ++..+||..+|+|+.-+.+++..|...|-+.-
T Consensus 9 Ii~~IL~~i~--~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~ 52 (95)
T 1r7j_A 9 IIQAILEACK--SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ 52 (95)
T ss_dssp HHHHHHHHHT--TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHH--cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEE
Confidence 3344445554 34 99999999999999999999999999998754
No 252
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=43.65 E-value=33 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..+|.++||+.+|+|+..+++++..+...|-+..
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s 60 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTG 60 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4599999999999999999999999999998754
No 253
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=43.23 E-value=48 Score=24.19 Aligned_cols=36 Identities=8% Similarity=0.178 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..+++.+||+.+|+|+.-+-..+.+|...|-+...-
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 568999999999999999999999999999887543
No 254
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=43.14 E-value=45 Score=25.84 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=33.5
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
...++..+||+.+|+++.-+-..+.+|+..|-+.-..|
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~ 83 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPN 83 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCC
Confidence 35689999999999999999999999999998875543
No 255
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=43.08 E-value=47 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=32.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
-..++..+||+.+|+|..-+-..+..|...|-+...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 457999999999999999999999999999988644
No 256
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.04 E-value=38 Score=26.29 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=32.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|+..|-+.-.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 346999999999999999999999999999988654
No 257
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=43.03 E-value=42 Score=26.63 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++...||+.+|+++.-+-..+.+|+..|-+.-.-
T Consensus 49 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 4579999999999999999999999999999886543
No 258
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.77 E-value=51 Score=25.83 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=33.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++...||+.+|+++.-+=..+.+|...|-+.-.-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 5689999999999999999999999999999886543
No 259
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=42.71 E-value=26 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++.++||+.+|+|+..+++++..|...|-+..
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s 62 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYV 62 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3589999999999999999999999999998754
No 260
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=42.60 E-value=43 Score=27.03 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 306 HNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
..++.+-.-...++...||+.+|+++.-+=..+.+|+..|-+.-.-|
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCC
Confidence 33333333346799999999999999999999999999998875543
No 261
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=42.38 E-value=46 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=32.5
Q ss_pred hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 313 k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
.... +|..+||+.+|+++.-+=..+.+|...|-+.-.-
T Consensus 48 ~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 48 SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3445 9999999999999999999999999999886544
No 262
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=42.18 E-value=59 Score=25.78 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=36.3
Q ss_pred HHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 306 HNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..++.+-.....++...||+.+|++..-+-..+.+|+..|-+.-.
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 333333334567999999999999999999999999999988644
No 263
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=41.83 E-value=30 Score=27.23 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=29.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...+|..+||+.+|+++.-+=..+.+|+..|-+.-.-
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 4579999999999999999999999999999886443
No 264
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.54 E-value=1.5e+02 Score=24.58 Aligned_cols=69 Identities=7% Similarity=-0.101 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 96 LIIREKLADLYESEQ---QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 96 a~l~~~LA~i~E~~g---d~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
...+..+|-.+...+ ++.++..+|.++--.+ ++..+-+.+-...--|...+||.+|..|++++...-++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 455666777776666 7889999998653211 24466777788888899999999999999999888664
No 265
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=41.27 E-value=66 Score=30.65 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhc----cCCHHHHHHHHHHhhchhc
Q 018521 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 97 ~l~~~LA~i~E~----~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~----~~D~~~a~~~~~Ka~~~~~ 168 (354)
.....|+.+|.. .+|+++|...+...- +. ...+.+.....+|.. .+|+.+|..+++|+...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 344568888888 889999988887431 11 113456666777776 77888888888888654
Q ss_pred CCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018521 169 SSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (354)
Q Consensus 169 ~~~~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~~ 205 (354)
+++. -....|.++.. .+++.+|...|.....
T Consensus 181 --~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 --GNVW----SCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp --TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CCHH----HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 2222 22344555555 5666666666666544
No 266
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=41.20 E-value=71 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..++..+||+.+|+|+.-+-..+..|...|-+...
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999988543
No 267
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=41.04 E-value=45 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=32.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
...+|..+||+.+|+++.-+-..+.+|+..|-+.-
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 35699999999999999999999999999998865
No 268
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=40.98 E-value=52 Score=25.55 Aligned_cols=36 Identities=3% Similarity=0.072 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..+|..+||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 389999999999999999999999999999886543
No 269
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=40.79 E-value=51 Score=25.93 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 307 Ni~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
.++.+-.....++..+||+.+|+++.-+=..+.+|+..|-+.-.
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 33333334458999999999999999999999999999987643
No 270
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=40.76 E-value=33 Score=34.71 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=53.2
Q ss_pred HHHHHhhchhhhccCCCc--HHHHHHHHHHHHHHHHhhcccccc---H-HHHHHHhCCChHHHHHHHHhhH
Q 018521 278 DAFAEELKPHQKALLPDN--FTVLDRAMIEHNLLSASKLYTNIS---F-EELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 278 ~~f~~~L~~h~~~~~~dg--~~~L~~~viEHNi~~isk~Y~~It---l-~~La~LL~ls~~eaE~~ls~MI 342 (354)
..|++..+.|.....+|+ -..|++.|.+.-+-++.++|.+-. + ..-.+.+..||+++|.++.++-
T Consensus 497 ~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~LF 567 (571)
T 2pft_A 497 DGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLF 567 (571)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHHh
Confidence 368888888888888887 688999999999999999887633 3 3466788899999999998863
No 271
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=40.52 E-value=46 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|+..|-+.-.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 357999999999999999999999999999988654
No 272
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=40.28 E-value=42 Score=25.68 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=32.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..+++.+||+.+|+|+.-+-..+..|...|-+..+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999988654
No 273
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=39.89 E-value=60 Score=25.68 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=33.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|++..-+-..+.+|...|-+.-.-
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 4679999999999999999999999999999886544
No 274
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.86 E-value=1.5e+02 Score=26.03 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcC--CCchhhhHHH-HHHHHHHhc---CCC----hH---HHHHHHHHHHHhhcc-ccchHHHHHHHHHH
Q 018521 35 VQAKKFIDHMLSD--DVPLVVSRQL-LQTFAQELG---RLE----PE---TQKEIANYTLAQIQP-RVVSFEEQVLIIRE 100 (354)
Q Consensus 35 ~~l~~~~~~~~~~--~~~~v~sr~~-l~~~~~~l~---~l~----~~---~~~~~~~~~l~~i~~-~~i~~E~e~a~l~~ 100 (354)
..++..++.++.+ +++..-.|.+ +-.|...+. +|+ .+ ...+=+..+++.|.. -..-+|+.+--+..
T Consensus 42 rq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~ 121 (211)
T 3bqo_A 42 RRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKI 121 (211)
T ss_dssp HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3455566666633 4444444542 223444432 242 22 234445555555532 22456666777778
Q ss_pred HHHHHHHHccCHHHHHHHhcccc
Q 018521 101 KLADLYESEQQWSKAAQMLSGID 123 (354)
Q Consensus 101 ~LA~i~E~~gd~~eAa~iL~~i~ 123 (354)
+..-++-+.|.+++|.++|.-+=
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHccchHHHHHHHHHHh
Confidence 88888999999999999999643
No 275
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=39.12 E-value=43 Score=31.80 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred HHHHHH---HHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 303 MIEHNL---LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 303 viEHNi---~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+.++|. +.+-+-...+|-.+||+.+|+|+.-+-+.+.+|+.+|-+.
T Consensus 13 ~r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 445663 3333456789999999999999999999999999999874
No 276
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=39.06 E-value=55 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=33.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3579999999999999999999999999999886543
No 277
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=38.95 E-value=39 Score=26.10 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=32.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 457999999999999999999999999999988654
No 278
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=38.95 E-value=6.4 Score=36.13 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHhhHhcCCeeEecC
Q 018521 316 TNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 316 ~~Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~akID 352 (354)
.=|+++.|++.| +++++++.+.+-.|+.+|.|+-.||
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiD 260 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVD 260 (270)
T ss_dssp --------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEecccc
Confidence 346667888777 7999999999999999999999998
No 279
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=38.66 E-value=29 Score=28.84 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68999999999999999999999999999874
No 280
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=38.10 E-value=66 Score=24.84 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=31.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
.++..+||+.+|+++.-+-..+.+|+..|-+.-.
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 6999999999999999999999999999988644
No 281
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=37.99 E-value=43 Score=24.82 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=31.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..+++.+|++.+|+|..-+-..+..|...|-+..
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999998854
No 282
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=37.52 E-value=57 Score=26.57 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
...+|..+||+.+|++..-+=..+.+|+..|-+.-.-|
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~ 94 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPH 94 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 35799999999999999999999999999998875543
No 283
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=36.87 E-value=58 Score=27.94 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=33.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
..+|...||+.+|+++.-+=..+.+|...|-+.-.-|
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~ 97 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKR 97 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 5799999999999999999999999999998876544
No 284
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=36.50 E-value=34 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 368899999999999999999999999999884
No 285
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=36.16 E-value=89 Score=25.06 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=39.5
Q ss_pred HHHHHhhchhhhccCCCcHHHHHHHHHHHHHHHHhh-----ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCe
Q 018521 278 DAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK-----LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRM 347 (354)
Q Consensus 278 ~~f~~~L~~h~~~~~~dg~~~L~~~viEHNi~~isk-----~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl 347 (354)
..|++.|.+|.+.. .|..++.+-. ....+|..+||+.+|+++.-+=..+.+|...|-+
T Consensus 20 ~~~~~~l~~~gLt~------------~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 20 QAYDRALRPSGLTN------------TQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HHHHHHHGGGTCCH------------HHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHcCCCH------------HHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 34777777775431 2344333322 2345999999999999999999999999999966
No 286
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=35.88 E-value=54 Score=26.01 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=32.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++...||+.+|+++.-+=..+.+|+..|-+.-.
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 478999999999999999999999999999988644
No 287
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=35.26 E-value=1.4e+02 Score=22.96 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..+|..+||+.+|+|+.-+=..+.+|...|-+.-.
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999988764
No 288
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=35.19 E-value=35 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 4568999999999999999999999999999884
No 289
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.14 E-value=69 Score=25.59 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|++..-+-..+.+|+..|-+.-.-
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecC
Confidence 4579999999999999999999999999999886543
No 290
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=35.13 E-value=36 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 357889999999999999999999999999885
No 291
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=35.12 E-value=30 Score=35.04 Aligned_cols=65 Identities=11% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHhhchhhhccCCCc--HHHHHHHHHHHHHHHHhhccccccH--HHHHHHhCCChHHHHHHHHhhH
Q 018521 278 DAFAEELKPHQKALLPDN--FTVLDRAMIEHNLLSASKLYTNISF--EELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 278 ~~f~~~L~~h~~~~~~dg--~~~L~~~viEHNi~~isk~Y~~Itl--~~La~LL~ls~~eaE~~ls~MI 342 (354)
..|++..+.|.....+|+ -..|++.|.+.-+.++.++|.+=.- ..-.+-+..+|+++|.++.++.
T Consensus 495 ~~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 495 EGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccCCHHHHHHHHHHhc
Confidence 347777777877777887 6889999999999999998866433 2344566789999999999874
No 292
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=35.11 E-value=62 Score=24.58 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=34.3
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~akID 352 (354)
....++.+|++.+ |+++.-+=..+.+|...|-+..+.|
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4678999999999 9999999999999999999976654
No 293
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=35.10 E-value=36 Score=28.29 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 68899999999999999999999999999875
No 294
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=34.87 E-value=22 Score=35.93 Aligned_cols=49 Identities=20% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcCCCHHHHHHHHHHHHHH
Q 018521 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTC 231 (354)
Q Consensus 177 l~y~~~~~r~~~~~r~fleAa~~y~e~~~t~~~~~~~~~~d~~e~~~~L~~av~~ 231 (354)
+.+..+..++|..+++|.+||+-.+.+-.+. ..++=++|+++|+.|+-+
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~------~~i~L~~RIeyLsrA~~~ 265 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATSN------FDITLFERIEFLSRANGF 265 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS------SCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999862 367888999999999953
No 295
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=34.85 E-value=55 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4569999999999999999999999999999886544
No 296
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=34.84 E-value=63 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=32.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++.+||+.+|+|..-+-..+..|...|-+...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 57899999999999999999999999999988654
No 297
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.80 E-value=49 Score=22.83 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=26.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHh
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIF 343 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~ 343 (354)
+..-|.+++|+.+|+|+.-+...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58999999999999999999998887664
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.67 E-value=1.9e+02 Score=26.79 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccC
Q 018521 89 VSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 151 (354)
Q Consensus 89 i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~ 151 (354)
.+.|+-..++...|-+++.. ||.+||.+.++++.+..+ .-++.-+.+-+.++.+
T Consensus 160 ~~~eelkkki~~lL~EY~~~-~D~~EA~~ci~EL~~p~f--------~~e~V~~ai~~alE~~ 213 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLS-GDISEAEHCLKELEVPHF--------HHELVYEAIIMVLEST 213 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHCCGGG--------HHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHcCCCcc--------hHHHHHHHHHHHHccC
Confidence 35676677777777777764 899999999999876433 2345555555555543
No 299
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=34.65 E-value=37 Score=28.80 Aligned_cols=34 Identities=3% Similarity=0.100 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|+|++-+-..+++|..+|-|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 3468999999999999999999999999999874
No 300
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=34.63 E-value=37 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 358999999999999999999999999999875
No 301
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=34.60 E-value=68 Score=25.58 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=32.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+||+.+|+++.-+-..+.+|+..|-+.-.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 568999999999999999999999999999988643
No 302
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=34.40 E-value=20 Score=26.93 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=25.3
Q ss_pred HHHHHHHhCCChH---HHHHHHHhhHhcCCeeEecC
Q 018521 320 FEELGTLLGIAPQ---KAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 320 l~~La~LL~ls~~---eaE~~ls~MI~~grl~akID 352 (354)
-+||+.+==+-|+ .+|..+-.|...|+|.++||
T Consensus 22 reRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 22 RSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3456665555555 56889999999999999997
No 303
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=34.40 E-value=37 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.0
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999875
No 304
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=34.32 E-value=79 Score=25.09 Aligned_cols=36 Identities=6% Similarity=0.123 Sum_probs=32.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..++..+||+.+|++..-+=..+.+|+..|-+.-.-
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 469999999999999999999999999999886543
No 305
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=34.30 E-value=37 Score=28.82 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=31.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 3568999999999999999999999999999875
No 306
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=33.87 E-value=54 Score=24.77 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=31.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
...++.+||+.+|+|+.-+-..+..|...|-+..
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 4579999999999999999999999999998864
No 307
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=33.75 E-value=86 Score=26.84 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=32.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..+|..+||+.+|+|+.-+-..+.+|...|-+...
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999999998654
No 308
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=33.66 E-value=66 Score=25.85 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=33.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...++..+||+.+|+++.-+=..+.+|+..|-+.-.-
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 3589999999999999999999999999999886543
No 309
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=33.60 E-value=48 Score=26.30 Aligned_cols=36 Identities=3% Similarity=0.137 Sum_probs=32.9
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
....+|..+||+.+|+++.-+=..+.+|...|-+.-
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 457899999999999999999999999999998863
No 310
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.42 E-value=69 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=31.7
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.-..+|+.+||+.+|+++.-+-..+.+|...|-+.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 34679999999999999999999999999999775
No 311
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=33.41 E-value=1.6e+02 Score=29.49 Aligned_cols=83 Identities=19% Similarity=0.019 Sum_probs=57.1
Q ss_pred HHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc------CCchHHHHHHH
Q 018521 106 YESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS------SSQQEVLNLQY 179 (354)
Q Consensus 106 ~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~------~~~~~~lkl~y 179 (354)
...-|++++|.++...+. .. ..|-..+++|+..+|+..|+..+.++...-. ..++++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~---------~~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~---- 725 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES---------AE---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG---- 725 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC---------CH---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----
T ss_pred hhhcCCHHHHHHHHHhhC---------cH---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH----
Confidence 456788888888876432 11 4888999999999999999999999854321 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 180 KVCYARILDLKRKFLEAALRYYDIS 204 (354)
Q Consensus 180 ~~~~~r~~~~~r~fleAa~~y~e~~ 204 (354)
-..++++....++|..|...|...-
T Consensus 726 ~~~~~~~a~~~~~~~~A~~~~~~~g 750 (814)
T 3mkq_A 726 LVTLAKDAETTGKFNLAFNAYWIAG 750 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCchHHHHHHHHHcC
Confidence 1245777778888888887777643
No 312
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=32.71 E-value=54 Score=24.71 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++..+||+.+|+|+.-+-..+..|...|-+..
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeE
Confidence 3489999999999999999999999999998864
No 313
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=32.69 E-value=42 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|+|++-+-..+.+|..+|-|.
T Consensus 165 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 165 ELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 3468899999999999999999999999999875
No 314
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.56 E-value=36 Score=27.15 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=29.9
Q ss_pred ccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 318 Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
+|.+.||+.+|+|+..+-..+.+++..|-|.=
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 89999999999999999999999999997753
No 315
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=32.52 E-value=42 Score=29.02 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 467889999999999999999999999999875
No 316
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=32.46 E-value=34 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=29.9
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|+|++-+-..+.+|..+|-|.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57889999999999999999999999999875
No 317
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=32.38 E-value=68 Score=25.01 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=31.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
...++.+||+.||+|+.-+-..+..|...|-+..
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 5689999999999999999999999999998754
No 318
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=32.29 E-value=3.1e+02 Score=26.47 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHhc--------------cccc--ccCCccCChhHHHHHHHHHHHHhhccCCHHH--H
Q 018521 95 VLIIREKLADLYESEQQWSKAAQMLS--------------GIDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVN--A 156 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~gd~~eAa~iL~--------------~i~v--Et~~~~~~~~eKle~~l~i~rL~L~~~D~~~--a 156 (354)
+-+--..||+.+.+.|+|.||+-++. .++. +.+. .+++.-.-+--+.. -..+....+.. .
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~-~i~p~~~ee~~~~~-d~g~~~~~fte~~l 87 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFR-VITPNIDEEASMME-DVGMQDVHFNEDVL 87 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGT-TTCGGGGGGC----------CCSSSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHh-hcCCCccchhcccc-ccCCCccccCHHHH
Confidence 44556889999999999999999885 2222 1111 12221000000000 00001111111 1
Q ss_pred HHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 157 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 157 ~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
...+++|...+.+++.|+.-+..+...+.+|...++|...|..|..+...+
T Consensus 88 ~~ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~dy~~Ls~~~~~~a~~y 138 (428)
T 2wm9_A 88 MELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAY 138 (428)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 224567777777777777777777777777777788877777766665544
No 319
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=32.01 E-value=19 Score=35.62 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~ 178 (354)
--.|+..|++-|+|.++.+.+.+-.. ..|..+.-.|.+.|.|..|..+++++ .
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~~pn~-------------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~ 149 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFINGPNN-------------AHIQQVGDRCYDEKMYDAAKLLYNNV--------------S 149 (449)
T ss_dssp ------------CHHHHTTTTTCC-----------------------------CTTTHHHHHHHT--------------T
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcH-------------HHHHHHHHHHHHcCCHHHHHHHHHHh--------------h
Confidence 44567788999999998877763111 26777788888889999999988877 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 179 YKVCYARILDLKRKFLEAALRYYDIS 204 (354)
Q Consensus 179 y~~~~~r~~~~~r~fleAa~~y~e~~ 204 (354)
++.++|..+..-++|-+|-..|....
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 55677778888888888888888774
No 320
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=31.87 E-value=41 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 358899999999999999999999999999874
No 321
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.76 E-value=56 Score=20.03 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=24.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcC
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFED 345 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~g 345 (354)
....+..++|+.||+|..-+...+.+.-..|
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 4567999999999999998888776654443
No 322
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=31.61 E-value=54 Score=24.25 Aligned_cols=32 Identities=3% Similarity=-0.048 Sum_probs=30.0
Q ss_pred ccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 318 Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
++..+||+.+|+++.-+=..+.+|...|-+..
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 89999999999999999999999999998843
No 323
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=31.35 E-value=82 Score=24.56 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHHHhhc----cCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 018521 139 KCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (354)
Q Consensus 139 ~~l~i~rL~L~----~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~~ 205 (354)
-+.....+|.. .+|+.+|..+++|+... ++++- ....|.+|.. .+++.+|...|.....
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a----~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDG----CLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHH----HHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 33444555555 56666666666666543 12221 1223455555 5666666666666555
No 324
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=31.28 E-value=1.3e+02 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhh
Q 018521 153 AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK-----------RKFLEAALRYYDISQIQ 207 (354)
Q Consensus 153 ~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~-----------r~fleAa~~y~e~~~t~ 207 (354)
+..|...++|+..+-.+ +.+ -+.+.|..|... ++|-+|.++|.......
T Consensus 62 ~~eAi~~le~AL~ldP~--~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK--KDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcC--cHH----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 56888999999888654 222 223455555544 58999999999888753
No 325
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=31.17 E-value=82 Score=23.14 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.4
Q ss_pred ChHHHHHHHHhhHhcCCeeE
Q 018521 330 APQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 330 s~~eaE~~ls~MI~~grl~a 349 (354)
|.++.+.++.++|.+|+|.+
T Consensus 46 t~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 46 TLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp CHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHHhCCeEEE
Confidence 45777888999999999864
No 326
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=31.01 E-value=51 Score=25.00 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=31.0
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
.++...||+.||+|..-+-+.+..|..+|-+...
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999999999999988643
No 327
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=30.95 E-value=74 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=33.3
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHhhHhcCCeeEecC
Q 018521 316 TNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 316 ~~Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~akID 352 (354)
..+++.+|++.+ |+++.-+-..+.+|...|-+...-|
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~ 71 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESF 71 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 568999999999 9999999999999999998876543
No 328
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=30.94 E-value=59 Score=25.62 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=31.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++..+||+.+|+|+.-+=..+.+|...|-+.-
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999999999999999998753
No 329
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=30.85 E-value=73 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=30.3
Q ss_pred cccHHHHHHHhCCChHH-HHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQK-AEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~e-aE~~ls~MI~~grl~ 348 (354)
.+++.+||+.+|+++.- +=..+.+|+..|-+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999886
No 330
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=30.68 E-value=43 Score=28.66 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
-.+|-+.||..+|++++-+-..+.+|..+|-|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999875
No 331
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=30.59 E-value=22 Score=26.81 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHhhHhcCCeeEecC
Q 018521 332 QKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 332 ~eaE~~ls~MI~~grl~akID 352 (354)
+.+|.++-+|...|+|.++||
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHHHHHcCCCCCCcC
Confidence 467889999999999999987
No 332
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=30.38 E-value=95 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=31.8
Q ss_pred cccccHHHH----HHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 315 YTNISFEEL----GTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 315 Y~~Itl~~L----a~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++..+| |+.+|+++.-+=..+.+|...|-+.-.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 467899999 899999999999999999999987643
No 333
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=30.33 E-value=55 Score=29.16 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHh
Q 018521 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (354)
Q Consensus 301 ~~viEHNi~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~ 343 (354)
++++|--|.+...+ +++++|++.+|+++++++..+..|..
T Consensus 17 ~~~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~ 56 (219)
T 2z99_A 17 KRVLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMAD 56 (219)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57889888888777 99999999999999999999988864
No 334
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=30.27 E-value=74 Score=25.93 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=32.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
...+|..+||+.+|++..-+=..+.+|+..|-|.-.-
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4569999999999999999999999999999886544
No 335
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=30.12 E-value=60 Score=27.43 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhccccccHHHHHHHhC--CChHHHHHHHHhhHh
Q 018521 301 RAMIEHNLLSASKLYTNISFEELGTLLG--IAPQKAEKIASRMIF 343 (354)
Q Consensus 301 ~~viEHNi~~isk~Y~~Itl~~La~LL~--ls~~eaE~~ls~MI~ 343 (354)
++++|--|.+...+ +++++|++.+| +++++++..+..+..
T Consensus 9 ~~~iEAlLf~~~~p---vs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 9 LRSLEALIFSSEEP---VNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 46778777776665 99999999999 999999999988864
No 336
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.08 E-value=81 Score=23.30 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=30.4
Q ss_pred ccccHHHHHHHhCCChH-HHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQ-KAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~-eaE~~ls~MI~~grl~ 348 (354)
...|-..||+.||+++. .+-..+.+|-.+|-+.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 45789999999999999 9999999999999885
No 337
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.23 E-value=55 Score=30.69 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhccc----cccHHHHHHHhCC-ChHHHHHHHH
Q 018521 301 RAMIEHNLLSASKLYT----NISFEELGTLLGI-APQKAEKIAS 339 (354)
Q Consensus 301 ~~viEHNi~~isk~Y~----~Itl~~La~LL~l-s~~eaE~~ls 339 (354)
..++..-+..+++.|. +++++.|+++||+ +++++++++.
T Consensus 204 ~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 204 TDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 3777788888999884 8999999999999 5788877764
No 338
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=29.22 E-value=41 Score=21.66 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=21.3
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhh
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRM 341 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~M 341 (354)
.+++..+|..||+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4788899999999999888877754
No 339
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.13 E-value=64 Score=24.85 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=31.3
Q ss_pred ccHHHHHHHh-CCChHHHHHHHHhhHhcCCeeEecC
Q 018521 318 ISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 318 Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~akID 352 (354)
+++.+|++.+ |+++.-+=..+.+|...|-+.-+.+
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 5699999999 9999999999999999998876543
No 340
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.98 E-value=58 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=32.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
..++...||+.+|+++.-+-..+.+|...|-+.-..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 479999999999999999999999999999886443
No 341
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=28.97 E-value=1.4e+02 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=32.7
Q ss_pred ccccc-cHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 314 ~Y~~I-tl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
+=..+ |...||+.||+|..-+-+.+..+..+|-+..+
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45677 88999999999999999999999999988643
No 342
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=28.92 E-value=52 Score=28.41 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=31.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 3468999999999999999999999999999874
No 343
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=28.90 E-value=92 Score=24.25 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=30.4
Q ss_pred cHHHHHHHhCCChHHHHHHHHhhHhcCCeeEec
Q 018521 319 SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSI 351 (354)
Q Consensus 319 tl~~La~LL~ls~~eaE~~ls~MI~~grl~akI 351 (354)
+..+||+.+|+++.-+=..+.+|...|-+.-.-
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 999999999999999999999999999886543
No 344
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.78 E-value=54 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=24.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhH
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI 342 (354)
...|.+++|+.+|+|+.-+...+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999988877654
No 345
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.59 E-value=1.2e+02 Score=25.25 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=30.9
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
--.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3467889999999999999999999999999874
No 346
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=28.44 E-value=47 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.6
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhh
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRM 341 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~M 341 (354)
=|=+.+++.++..+|++++++|..+...
T Consensus 36 GYL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 36 GFLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SSBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 4777999999999999999999988654
No 347
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=28.42 E-value=72 Score=23.71 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=31.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
...++.+|++.+|+|+.-+-..+..|...|-+..+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 45899999999999999999999999999988654
No 348
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=28.17 E-value=88 Score=24.38 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=31.1
Q ss_pred HHHHhhccCCHHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 018521 143 IARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDIS 204 (354)
Q Consensus 143 i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~----~r~fleAa~~y~e~~ 204 (354)
...+|...++..+|..+++|+... ++++- ....|.+|.. .+++.+|...|....
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a----~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----NSGNG----CRFLGDFYENGKYVKKDLRKAAQYYSKAC 88 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----TCHHH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----CCHHH----HHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 566777777777788888887665 22221 1223455555 555555555555443
No 349
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=27.91 E-value=1.2e+02 Score=23.58 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=30.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
...++.+||+.||+|..-+-..+..|...|-+..
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3589999999999999999999999999998754
No 350
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.31 E-value=55 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|++++-+-..+++|..+|-|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999999875
No 351
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.12 E-value=2.7e+02 Score=23.08 Aligned_cols=74 Identities=15% Similarity=-0.034 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018521 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (354)
Q Consensus 134 ~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~~~------~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t~ 207 (354)
....+.++.....+...++|..|-..++|+.....+.+ ........+.-.|..+..-++|-+|-.+|......+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 34577888889999999999999999999998877621 111122356666788888889999999998888763
No 352
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=27.08 E-value=1.2e+02 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=34.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
....++.+|++.+|+++.-+=..+.+|...|-|.-..|
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~ 72 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPA 72 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 45789999999999999999999999999999876654
No 353
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.07 E-value=84 Score=27.96 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 308 i~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+..+.-....-|.+.||+-+|+|+..++..+.+|...|-+.
T Consensus 169 ~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 169 ILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 33334577899999999999999999999999999999885
No 354
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=27.00 E-value=2.8e+02 Score=23.33 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=71.7
Q ss_pred HHH-hhcCCCHHHHHHHHHHHhcCCCchhh--hHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 018521 25 LSS-VISSNDIVQAKKFIDHMLSDDVPLVV--SRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREK 101 (354)
Q Consensus 25 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~v~--sr~~l~~~~~~l~~l~~~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~ 101 (354)
+++ ++++++.+.|-.|++-+=..+.|..= =-+++.-+-.++..+|++.. ..=+--+.+...
T Consensus 3 ~~~~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----------------~~wrrYI~LWIr 66 (161)
T 4h7y_A 3 LGSIMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----------------GQNESFARIQVR 66 (161)
T ss_dssp -------CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----------------TTCHHHHHHHHH
T ss_pred ccceeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----------------ccHHHHHHHHHH
Confidence 455 55667899999999887533332100 01233334445556666521 111223456666
Q ss_pred HHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhc
Q 018521 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (354)
Q Consensus 102 LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~ 168 (354)
.|.. ++.+|.++|.++.+...-- .+.. ..+|+--++.=+..++..+|..++-++...-.
T Consensus 67 YA~~-~ei~D~d~aR~vy~~a~~~--hKkF-----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 67 FAEL-KAIQEPDDARDYFQMARAN--CKKF-----AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHH-HHHHCGGGCHHHHHHHHHH--CTTB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH-HHhcCHHHHHHHHHHHHHH--hHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 6755 5558999988888765211 2233 66788888888889999999999999988543
No 355
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=26.83 E-value=1e+02 Score=24.11 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=30.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 318 Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
+|..+||+.+|++..-+-..+.+|...|-+.-
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999998854
No 356
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=26.78 E-value=61 Score=25.24 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=31.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..++..+||+.+|+++.-+=..+.+|...|-+.-
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 85 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDK 85 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 5699999999999999999999999999998754
No 357
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=26.45 E-value=1.3e+02 Score=28.40 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHHHHHHHhhchhcC
Q 018521 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (354)
Q Consensus 90 ~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~~~~~Ka~~~~~~ 169 (354)
.+++.+..+...+++.+.+.|++.+|...+..+-- .-+-+| +++-..|+.+...|+...|...+.+....+.+
T Consensus 165 ~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~-----~~P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 165 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF-----EHPYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45566667777889999999999999988876521 112233 37888899999999999999999999887643
Q ss_pred ----CchHHHH
Q 018521 170 ----SQQEVLN 176 (354)
Q Consensus 170 ----~~~~~lk 176 (354)
.+.++++
T Consensus 238 eLG~~P~~~l~ 248 (388)
T 2ff4_A 238 DLGIDPGPTLR 248 (388)
T ss_dssp HHSCCCCHHHH
T ss_pred HhCCCCCHHHH
Confidence 2345554
No 358
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=26.44 E-value=1.2e+02 Score=25.28 Aligned_cols=38 Identities=5% Similarity=0.123 Sum_probs=34.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~akID 352 (354)
...+|...||+.+|+++.-+=..+.+|+..|-|.-.-|
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~ 92 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPS 92 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccC
Confidence 56899999999999999999999999999998875543
No 359
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.20 E-value=85 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHh
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~ 343 (354)
++...|.+++|+.||+|+.-+...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456778999999999999999988877653
No 360
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=26.16 E-value=64 Score=25.67 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=33.7
Q ss_pred hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 313 k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
.....++..+||+.+|+++.-+=..+.+|+..|-+.-.
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 34568999999999999999999999999999988644
No 361
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=26.14 E-value=91 Score=23.76 Aligned_cols=33 Identities=6% Similarity=0.065 Sum_probs=30.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
...++.++|+.||+|+.-+-..+..|...|-+.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 368999999999999999999999999988774
No 362
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.00 E-value=57 Score=27.98 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=29.8
Q ss_pred cccHHHHHHHhCCCh-HHHHHHHHhhHhcCCee
Q 018521 317 NISFEELGTLLGIAP-QKAEKIASRMIFEDRMR 348 (354)
Q Consensus 317 ~Itl~~La~LL~ls~-~eaE~~ls~MI~~grl~ 348 (354)
.+|-+.||..+|+++ +-+-..+.+|..+|-|.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~ 201 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV 201 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE
Confidence 688899999999999 89999999999999874
No 363
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=25.88 E-value=83 Score=24.79 Aligned_cols=35 Identities=6% Similarity=0.180 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..+|..+||+.+|+++.-+=..+.+|+..|-+.-.
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 35899999999999999999999999999988643
No 364
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.79 E-value=65 Score=21.82 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=24.9
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhH
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI 342 (354)
++...|.+++|+.+|+|+.-+...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999999999999998888777654
No 365
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=25.75 E-value=61 Score=25.73 Aligned_cols=35 Identities=3% Similarity=0.239 Sum_probs=31.4
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhHhcCC-ee
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDR-MR 348 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~gr-l~ 348 (354)
+=...+++.+|..-|+++..++..++.+|.+|. ++
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 447789999999999999999999999999996 53
No 366
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.70 E-value=5e+02 Score=26.00 Aligned_cols=91 Identities=9% Similarity=0.057 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHHHHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCH
Q 018521 74 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDA 153 (354)
Q Consensus 74 ~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~ 153 (354)
+..+...+++.+.|.= .+-| |.+.--|-..|...+.++.|.+++...+..-. ..+..+-+.|.....|++...+||
T Consensus 211 r~~Ll~~~rta~lr~D-~~~q-a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y 286 (523)
T 4b4t_S 211 RSTMMKFLKIASLKHD-NETK-AMLINLILRDFLNNGEVDSASDFISKLEYPHT--DVSSSLEARYFFYLSKINAIQLDY 286 (523)
T ss_dssp HTHHHHHHHHCCSCSS-SCHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT--TSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcccC-cchh-HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc--cCCHHHHHHHHHHHHHHHHHhccH
Confidence 3444556666655543 2344 55666777788889999999999997653211 246788899999999999999999
Q ss_pred HHHHHHHHHhhchhc
Q 018521 154 VNAEAFINKASFLVS 168 (354)
Q Consensus 154 ~~a~~~~~Ka~~~~~ 168 (354)
..|..++.-|-.+-.
T Consensus 287 ~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 287 STANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999998876654
No 367
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.22 E-value=97 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=30.1
Q ss_pred ccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 318 Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
.|...||.-||++-..+-+.+-+|-.+|.+..
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 88899999999999999999999999999865
No 368
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=25.13 E-value=50 Score=27.34 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHhh
Q 018521 315 YTNISFEELGTLLGIAPQKAEKIASRM 341 (354)
Q Consensus 315 Y~~Itl~~La~LL~ls~~eaE~~ls~M 341 (354)
++-=|+++||+.+|++++...+.+.+.
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344589999999999999999988764
No 369
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=24.98 E-value=56 Score=30.79 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHH---HHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 301 RAMIEHN---LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 301 ~~viEHN---i~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+++..+| |+..-+ ...+|-.+||+.+|+|+.-+-+.+.+|+.+|-+.
T Consensus 15 ~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 15 KSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp -------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred hhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4555665 334444 7889999999999999999999999999999875
No 370
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=24.89 E-value=60 Score=28.93 Aligned_cols=34 Identities=12% Similarity=0.225 Sum_probs=27.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhH-----hcCCeeE
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMI-----FEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI-----~~grl~a 349 (354)
.-++.++||..+|++++++...+.+|= .+|+|-|
T Consensus 35 rpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~D~~G~Ivg 73 (220)
T 3f2g_A 35 RPVSRTTLAGILDWPAERVAAVLEQATSTEYDKDGNIIG 73 (220)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHCTTCEECTTSCEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHhCCcEEECCCCCEEE
Confidence 346778999999999999999999885 4555543
No 371
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.85 E-value=1.2e+02 Score=22.23 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCC---HHHHHHHHHHhhchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018521 138 SKCVQIARLYLEDDD---AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (354)
Q Consensus 138 e~~l~i~rL~L~~~D---~~~a~~~~~Ka~~~~~~~~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~e~~~t 206 (354)
+++..-...+...++ ...|...++++...-.++. +=....|..+...++|-+|...|..+...
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE------AALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444555555544444 7999999999988765422 22235599999999999999999999885
No 372
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=24.79 E-value=5.7e+02 Score=26.10 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCCch---hhhHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhhcc----ccchHHHH------HHHH
Q 018521 34 IVQAKKFIDHMLSDDVPL---VVSRQLLQTFAQELGRLE--PETQKEIANYTLAQIQP----RVVSFEEQ------VLII 98 (354)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~---v~sr~~l~~~~~~l~~l~--~~~~~~~~~~~l~~i~~----~~i~~E~e------~a~l 98 (354)
+..|+.+++.--++..++ +..+.+...+-.+|...| ++.+...+.+..+.-.. +.+ ++.- ...+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i-l~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY-LKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH-HHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHhCCCCHHH
Confidence 467888888755443221 222333333434444444 34444444433332110 011 1111 1346
Q ss_pred HHHHHHHHHHccCHHHHHHHhcccccccCCcc-------CCh---------hHHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 018521 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRV-------IDD---------TFRLSKCVQIARLYLEDDDAVNAEAFINK 162 (354)
Q Consensus 99 ~~~LA~i~E~~gd~~eAa~iL~~i~vEt~~~~-------~~~---------~eKle~~l~i~rL~L~~~D~~~a~~~~~K 162 (354)
...+|.+.|..|++++|.+++...- +..... .+. ..-..+|+.-+++....++..+|..++.+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l-~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCI-DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7889999999999999998887542 110000 000 01245899999999999999999999999
Q ss_pred hhch
Q 018521 163 ASFL 166 (354)
Q Consensus 163 a~~~ 166 (354)
|...
T Consensus 460 A~~~ 463 (679)
T 4e6h_A 460 CRRL 463 (679)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9765
No 373
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.48 E-value=96 Score=23.68 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=31.8
Q ss_pred ccccc-cHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~I-tl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
+=..+ +..+||+.||+|..-+-+.+..|..+|-+..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34566 9999999999999999999999999998864
No 374
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=23.82 E-value=71 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=29.8
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
-.+...++..+|+++..+...+..++..|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 447789999999999999999999999998864
No 375
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.75 E-value=92 Score=22.65 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=24.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHh
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIF 343 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~ 343 (354)
...|+.++|+.+|+|+.-+...+.+...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998887653
No 376
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.71 E-value=1.8e+02 Score=22.75 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=32.4
Q ss_pred ccccc-cHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 314 ~Y~~I-tl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
+=.++ |...||+.||+|..-+-+.+..+..+|-+..+
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 44677 58999999999999999999999999988653
No 377
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.03 E-value=1.6e+02 Score=29.49 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHhcc
Q 018521 97 IIREKLADLYESEQQWSKAAQMLSG 121 (354)
Q Consensus 97 ~l~~~LA~i~E~~gd~~eAa~iL~~ 121 (354)
+....||+++.+.|+++.|.+++..
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678999999999999999999983
No 378
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=23.01 E-value=1.6e+02 Score=22.30 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHHHHh-cCCCchhhhHHHHHHHHHHhcCCC
Q 018521 19 EQYKHILSSVISSN-DIVQAKKFIDHML-SDDVPLVVSRQLLQTFAQELGRLE 69 (354)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~~~~~~v~sr~~l~~~~~~l~~l~ 69 (354)
+.-..+++++++.+ |+.+...++..++ ++.| ..||---+-|.+.++.|+
T Consensus 5 ~~an~IVqQlv~aGadLa~~rtmlrn~m~g~~v--alsr~eq~Il~qHFPnM~ 55 (94)
T 3tjy_A 5 PRANRIVQQLVEAGADLANIRTMFRNMLRGEEM--ILSRAEQNVFLQHFPDML 55 (94)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHHCTTHH
T ss_pred ccHHHHHHHHHHhcccHHHHHHHHHHHHcCCch--hhhHHHHHHHHHHCcccc
Confidence 33467888888776 9999999999988 4555 449999999999998863
No 379
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=22.94 E-value=88 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=33.5
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHhhHhcCCeeEecC
Q 018521 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (354)
Q Consensus 315 Y~~Itl~~La~LL-~ls~~eaE~~ls~MI~~grl~akID 352 (354)
....++.+|++.+ |+++.-+=..+.+|...|-+.-+.|
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 74 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQY 74 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4568999999999 5999999999999999999876553
No 380
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=22.62 E-value=90 Score=29.50 Aligned_cols=54 Identities=6% Similarity=0.090 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHh-hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 297 TVLDRAMIEHNLLSAS-KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 297 ~~L~~~viEHNi~~is-k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
+.++..|.+++..-.. ++|...|-.++|+++|+|+...+..+.+|-.+|...++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3ez9_A 22 KAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNK 76 (403)
T ss_dssp GGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCc
Confidence 3355666676655444 59999999999999999999999999988777765443
No 381
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.62 E-value=1.3e+02 Score=22.00 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.7
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHhhH
Q 018521 314 LYTNISFEELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 314 ~Y~~Itl~~La~LL~ls~~eaE~~ls~MI 342 (354)
++...|..++|+.||+|+.-+...+.+..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 68889999999999999999988887754
No 382
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=22.48 E-value=24 Score=28.96 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHHhcChhhHHHHHHhhchhhhccCC-Cc-HHHHHHHHHHHHHH-HHhhccccccHHHHHHHh
Q 018521 254 CSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLP-DN-FTVLDRAMIEHNLL-SASKLYTNISFEELGTLL 327 (354)
Q Consensus 254 ~~~lp~~~~L~k~f~~~li~~~~i~~f~~~L~~h~~~~~~-dg-~~~L~~~viEHNi~-~isk~Y~~Itl~~La~LL 327 (354)
+..+.....|.+.+ +.|...|..|+.-.-. .| ...|.+-+..+|+. +.+.||+.||.+.|..--
T Consensus 41 v~sleEI~~L~~~H----------e~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W 107 (129)
T 1wlx_A 41 VHTIEEIEGLISAH----------DQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKW 107 (129)
T ss_dssp CCSHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHH
T ss_pred hccHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHH
Confidence 44555555555554 4566666555432100 01 24566667777763 334499999988887643
No 383
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=22.30 E-value=67 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHhhHhcCCe
Q 018521 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRM 347 (354)
Q Consensus 317 ~Itl~~La~LL~ls~~eaE~~ls~MI~~grl 347 (354)
.+|-+.||..+|++++-+-..+.+|..+| +
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i 207 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V 207 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e
Confidence 35678999999999999999999999999 5
No 384
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=22.26 E-value=2.3e+02 Score=25.47 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHccCHHH
Q 018521 37 AKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSK 114 (354)
Q Consensus 37 l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l~--~~~~~~~~~~~l~~i~~~~i~~E~e~a~l~~~LA~i~E~~gd~~e 114 (354)
+..||.+++-....- .=++.++..|+++| +......+..++... .++ +-+++.-
T Consensus 4 ~~~fir~Li~~~L~~----~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~--~~~------------------ky~nI~~ 59 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSK----VTTEKVLRQMRKLPWQDQEVKDYVICCMINI--WNV------------------KYNSIHC 59 (248)
T ss_dssp HHHHHHHHHHTTCST----TSHHHHHHHHHTSCTTSHHHHHHHHHHHHCG--GGS------------------CGGGHHH
T ss_pred HHHHHHHHHHHHccc----ccHHHHHHHHHcCCCCcHHHHHHHHHHhcch--hhc------------------ccchHHH
Confidence 567888887555432 22455567788886 333344555555433 223 2345666
Q ss_pred HHHHhcccccccCCccCChhHHHHHHHHHHHHhhccCCHHHHH
Q 018521 115 AAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 157 (354)
Q Consensus 115 Aa~iL~~i~vEt~~~~~~~~eKle~~l~i~rL~L~~~D~~~a~ 157 (354)
.|.+|.++.- +. .--.-.-++-.+|-+|.+||.+|+..-+
T Consensus 60 lA~ll~~L~~--~~-~~~~i~vVD~vlE~Ir~gLE~n~~~~nQ 99 (248)
T 1uw4_B 60 VANLLAGLVL--YQ-EDVGIHVVDGVLEDIRLGMEVNQPKFNQ 99 (248)
T ss_dssp HHHHHHHHTT--TC-HHHHHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHHHHHHHh--hC-hHHhhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 6666665421 11 0011344888999999999999885443
No 385
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=21.75 E-value=63 Score=25.43 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=26.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHhhHhcCCeeEe
Q 018521 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (354)
Q Consensus 316 ~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ak 350 (354)
..+|..+||+.+|+++.-+=..+.+|+..|-+.-.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 67999999999999999999999999999987543
No 386
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=21.62 E-value=1.9e+02 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=32.3
Q ss_pred ccccc-cHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 314 ~Y~~I-tl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
+=.++ +...||+.||+|..-+-+.+..|..+|-+..
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 44678 9999999999999999999999999998864
No 387
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=21.25 E-value=1.9e+02 Score=21.61 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHHHHh-cCCCchhhhHHHHHHHHHHhcCC
Q 018521 19 EQYKHILSSVISSN-DIVQAKKFIDHML-SDDVPLVVSRQLLQTFAQELGRL 68 (354)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~~~~~~v~sr~~l~~~~~~l~~l 68 (354)
+.-..+++++.+.+ |+.+....+..++ ++.| ..||---+-|.+.++.|
T Consensus 7 ~~an~IVqQLv~AGADLA~vrtmlrnvm~g~~v--alsr~e~~il~qHFPnm 56 (85)
T 3hgl_A 7 AHANSIVQQLVSEGADISHTRNMLRNAMNGDAV--AFSRVEQNIFRQHFPNM 56 (85)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCC--CCCHHHHHHHHHHCTTH
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHcCchH--hhhHHHHHHHHHHChhh
Confidence 34467888888766 9999999999988 4555 44999999999999886
No 388
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=21.17 E-value=67 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018521 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYY 201 (354)
Q Consensus 171 ~~~~lkl~y~~~~~r~~~~~r~fleAa~~y~ 201 (354)
+.|++.++|-.-++..|...++|.||+.++.
T Consensus 5 ~~pdl~~~wl~~La~~h~~~~n~~EAa~cl~ 35 (428)
T 2wm9_A 5 STPELRKTWLDSMARIHVKNGDLSEAAMCYV 35 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999999999999997
No 389
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.02 E-value=97 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.4
Q ss_pred hccccccHHHHHHHhCCChHHHHHHHHhhH
Q 018521 313 KLYTNISFEELGTLLGIAPQKAEKIASRMI 342 (354)
Q Consensus 313 k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI 342 (354)
.++...|..++|+.||+|+.-+...+.+..
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478899999999999999999988887754
No 390
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=20.96 E-value=20 Score=36.52 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHhhccccccHHHHHHHhCCChHHHHHHHHhhHhcCCe
Q 018521 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRM 347 (354)
Q Consensus 308 i~~isk~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl 347 (354)
|..+-+-+..||-..+++++|+|+.++-..+.+|+.+|.|
T Consensus 521 I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 521 AMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
No 391
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=20.43 E-value=1.4e+02 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHh---hccccccHHHHHHHhCCChHHHHHHHHhhHhcCCee
Q 018521 303 MIEHNLLSAS---KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (354)
Q Consensus 303 viEHNi~~is---k~Y~~Itl~~La~LL~ls~~eaE~~ls~MI~~grl~ 348 (354)
+.++|...+- +-...+|-.+||+.+|+|+.-+-+.+.+|+.+|-+.
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3455543333 345689999999999999999999999999999875
No 392
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.36 E-value=59 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=30.7
Q ss_pred ccc-cHHHHHHHhCCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~I-tl~~La~LL~ls~~eaE~~ls~MI~~grl~a 349 (354)
..+ +...||+.||+|..-+-+.+..|..+|-+..
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 466 8999999999999999999999999998764
No 393
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=20.20 E-value=2.4e+02 Score=24.79 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcC---CCHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhccccchHHHH
Q 018521 20 QYKHILSSVISS---NDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRL--EPETQKEIANYTLAQIQPRVVSFEEQ 94 (354)
Q Consensus 20 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~v~sr~~l~~~~~~l~~l--~~~~~~~~~~~~l~~i~~~~i~~E~e 94 (354)
.+..++...-.. ...+.+...|..|++..++....+++...|++.+... +++.........| +..-|-.+
T Consensus 32 ~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L-----r~~G~~~~ 106 (233)
T 2h56_A 32 RLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL-----RQAGVSKR 106 (233)
T ss_dssp HHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH-----HHTTCCHH
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH-----HHcCCCHH
Confidence 455555544221 1236889999999999999999999999999988554 2333332222223 22345567
Q ss_pred HHHHHHHHHHHHHHc
Q 018521 95 VLIIREKLADLYESE 109 (354)
Q Consensus 95 ~a~l~~~LA~i~E~~ 109 (354)
+|+--..+|+...+.
T Consensus 107 KA~~I~~~A~~i~~~ 121 (233)
T 2h56_A 107 KIEYIRHVCEHVESG 121 (233)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777888776553
No 394
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.15 E-value=1.4e+02 Score=23.26 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=31.7
Q ss_pred ccccHHHHHHHh--CCChHHHHHHHHhhHhcCCeeE
Q 018521 316 TNISFEELGTLL--GIAPQKAEKIASRMIFEDRMRG 349 (354)
Q Consensus 316 ~~Itl~~La~LL--~ls~~eaE~~ls~MI~~grl~a 349 (354)
-.+|...||+.+ |+|+..+-+.+.+|...|-+..
T Consensus 26 g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 26 GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEe
Confidence 489999999999 9999999999999999998865
Done!