BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018522
         (354 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FH5|A Chain A, The Structure Of The Mammalian Srp Receptor
 pdb|2GO5|1 Chain 1, Structure Of Signal Recognition Particle Receptor (Sr) In
           Complex With Signal Recognition Particle (Srp) And
           Ribosome Nascent Chain Complex
          Length = 185

 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)

Query: 1   MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
           M++   IF++GGL+LW  + + ++  G P++ LIRS LL+ER G  SF ++    A TLK
Sbjct: 10  MVDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 64

Query: 61  WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
           +   N+  LVFV  +Q+IL L YVD L+  + + F + Y
Sbjct: 65  YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,801,221
Number of Sequences: 62578
Number of extensions: 311862
Number of successful extensions: 593
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 1
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)