BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018522
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 174/377 (46%), Gaps = 51/377 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAE----ARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE RA ++ + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIEVEAADHG 281
GK D + PK+K K RVW+ +K LD++ P +N EAA
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPT----TNGTPEAALSE 275
Query: 282 ESMMDK-----EEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANLDKAD 334
+ + + ++ D S +DE ++ KP A K G M + + G +L + D
Sbjct: 276 DINLIRGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSRED 335
Query: 335 LEPALKALKDRLMTKNV 351
+E L ++D L+ KNV
Sbjct: 336 MESVLDKMRDHLIAKNV 352
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha
OS=Dictyostelium discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 6/99 (6%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ I T+GG++LW+ KE +KGSPI++LI+ LLEERS SF DS Y+LK
Sbjct: 1 MLDSFTILTKGGIVLWS-KEFAK-IKGSPINSLIKKVLLEERSAETSFQIDS----YSLK 54
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
WTF NE L+FV VYQ+I LLY+++LL +K+ F ++Y
Sbjct: 55 WTFSNEFDLIFVVVYQKIFTLLYIEELLTTVKKRFIKMY 93
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 164/362 (45%), Gaps = 42/362 (11%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEES-RVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREK-LTPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NV 351
NV
Sbjct: 330 NV 331
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 170/385 (44%), Gaps = 64/385 (16%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAE----ARAEELKK----SKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE RA K S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVWD--DSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNV 351
+L + D+E L ++D L+ KNV
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNV 355
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 175/391 (44%), Gaps = 77/391 (19%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
++D L G + V E+S G+ G EN ++SK + +R K
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 224 ----------GGKKTDTVVSKGSNPD-PKKKITKKNRVWDDSPPESK--LDFTDPAGGNG 270
G +K+ SK + D PK+K K RVW +K LD++ P
Sbjct: 214 REEFIQKHGRGLEKS----SKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGA 269
Query: 271 SNIE-------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSM 320
+ + G + D D S +DEE ++ +KP A K G M
Sbjct: 270 PDAAPPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGM 323
Query: 321 FQSIAGKANLDKADLEPALKALKDRLMTKNV 351
+ + G +L + D+E L ++D L+ KNV
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNV 354
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 57/381 (14%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPT-TNGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNV 351
+ D+E L ++D L+ KNV
Sbjct: 334 SREDMESVLDKMRDHLIAKNV 354
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|Q8I4R2|RBP3_PLAF7 Reticulocyte-binding protein 3 OS=Plasmodium falciparum (isolate
3D7) GN=Rh3 PE=3 SV=1
Length = 2792
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 166 DDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGG 225
D+ S N+ KLEN S+ +E + + VA N+SS + ++ ++L KLRN
Sbjct: 813 DELKSYNILSYKLENDTSHDVVNSVENTPSSDVATAVSNSSSILSTYNSTELNKLRNFFS 872
Query: 226 KKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESKL 260
+K D + + + +KN+++DD + +L
Sbjct: 873 EKDDELNVESKVKQDENIFIEKNKIFDDIIKDIEL 907
>sp|A1DH89|CREA_NEOFI Probable DNA-binding protein creA OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=creA
PE=3 SV=1
Length = 416
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 238 PDPKKKITKKNRV-----WDDSPPESKLDFTDPAGGNGSNIEVEA--ADHGESMMDKEEV 290
P P K IT+ V D SPP S F++ AG SN+ A +D S MD +
Sbjct: 156 PPPSKPITRSAPVSQVGSPDISPPHS---FSNYAGHMRSNLGPYARNSDRASSGMDINLL 212
Query: 291 FSSDSESEEDEEVGKHNKP 309
++ S+ E DE G HN P
Sbjct: 213 ATAASQVERDEHYGFHNGP 231
>sp|B0XSK6|CREA_ASPFC Probable DNA-binding protein creA OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=creA PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 238 PDPKKKITKKNRV-----WDDSPPESKLDFTDPAGGNGSNIEVEA--ADHGESMMDKEEV 290
P P K IT+ V D SPP S F++ AG SN+ A +D S MD +
Sbjct: 164 PPPSKPITRSAPVSQVGSPDISPPHS---FSNYAGHMRSNLGSYARNSDRASSGMDINLL 220
Query: 291 FSSDSESEEDEEVGKHNKP 309
++ S+ E DE G HN P
Sbjct: 221 ATAASQVERDEHYGFHNGP 239
>sp|Q4X0Z3|CREA_ASPFU Probable DNA-binding protein creA OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=creA
PE=3 SV=1
Length = 424
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 238 PDPKKKITKKNRV-----WDDSPPESKLDFTDPAGGNGSNIEVEA--ADHGESMMDKEEV 290
P P K IT+ V D SPP S F++ AG SN+ A +D S MD +
Sbjct: 164 PPPSKPITRSAPVSQVGSPDISPPHS---FSNYAGHMRSNLGSYARNSDRASSGMDINLL 220
Query: 291 FSSDSESEEDEEVGKHNKP 309
++ S+ E DE G HN P
Sbjct: 221 ATAASQVERDEHYGFHNGP 239
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNV 351
G ++++DL+ L+ L +L+TKNV
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNV 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,011,208
Number of Sequences: 539616
Number of extensions: 6266018
Number of successful extensions: 23109
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 22236
Number of HSP's gapped (non-prelim): 998
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)