Query 018522
Match_columns 354
No_of_seqs 143 out of 224
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 1.2E-46 4E-51 339.0 9.9 147 1-164 10-165 (185)
2 1nrj_A Signal recognition part 99.5 1.2E-14 4.2E-19 124.4 8.6 98 1-98 1-116 (158)
3 2vx8_A Nucleoporin-like protei 99.5 4.6E-14 1.6E-18 125.6 6.1 113 1-123 44-159 (169)
4 4afi_A AP-3 complex subunit de 97.5 0.0011 3.9E-08 58.7 11.9 105 4-120 57-166 (173)
5 4b93_A Vesicle-associated memb 96.5 0.021 7E-07 51.0 11.2 105 4-121 5-115 (189)
6 2nut_C Vesicle-trafficking pro 96.2 0.03 1E-06 49.9 10.4 95 1-102 2-103 (196)
7 2vgl_S AP-2 complex subunit si 94.4 0.1 3.5E-06 44.0 7.4 105 1-113 1-111 (142)
8 1w63_Q Adapter-related protein 94.1 0.16 5.6E-06 43.7 8.0 93 1-101 1-97 (158)
9 1w63_M Adaptor-related protein 92.0 0.59 2E-05 46.2 9.6 106 1-113 2-111 (423)
10 2vgl_M AP-2 complex subunit MU 91.6 0.62 2.1E-05 46.2 9.3 105 1-113 1-109 (435)
11 3tjz_C Coatomer subunit zeta-1 89.2 1.9 6.6E-05 36.9 9.1 104 1-113 12-122 (153)
12 3bw6_A Synaptobrevin homolog Y 84.1 7.3 0.00025 32.7 9.8 98 12-119 20-135 (144)
13 3kyq_A YKT6, synaptobrevin hom 67.4 9.4 0.00032 34.0 6.1 45 47-101 59-108 (199)
14 3e70_C DPA, signal recognition 65.1 2.7 9.2E-05 40.2 2.2 29 324-352 41-69 (328)
15 2j3w_A Sedlin, trafficking pro 42.9 1.4E+02 0.0048 24.6 10.7 113 2-120 6-139 (142)
16 3cue_A Transport protein parti 41.8 2E+02 0.0068 26.0 12.2 70 46-120 120-218 (219)
17 2j3t_C Trafficking protein par 38.3 1.7E+02 0.0057 24.3 8.8 111 1-118 2-135 (145)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=1.2e-46 Score=339.04 Aligned_cols=147 Identities=34% Similarity=0.541 Sum_probs=103.9
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~ 80 (354)
|.|+|+|||+||||||||+.. ..++++|||+||++||||||+++.+|.+ |+|+|+|+++|+++||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~-~~~~~~~IN~LIr~VlLEER~~~~~y~~----d~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGV-SDSCTGPVNALIRSVLLQERGGNNSFTH----EALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTT-TBSCCCHHHHHHHHTGGGC-------CC----CCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeecCC-cccccchHHHHHHHhhhccccCCCceeE----cCeEEEEEEeccCCEEEEEEEccccc
Confidence 899999999999999987544 3578999999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcC---C------CCcchHHHHHHHHHHHHHHHHHhhhccccccccccccccCCCccCCC
Q 018522 81 LLYVDDLLAMMKQSFSEIYDPKR---T------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGG 151 (354)
Q Consensus 81 l~yvd~LL~~v~~~F~~~y~~~~---~------~~~~Fd~~F~~~l~e~e~~s~~~~~~~~~~~~~~~s~k~~~~~~~~~ 151 (354)
|+|||+||++|+++|+++|++.+ . .+.+||++|+++|+++|++++..+ +++|++|+++.+++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~--~k~mr~fees~ks~------- 155 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAK------- 155 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh--HHhhccHhhhhhhh-------
Confidence 99999999999999999997652 1 245799999999999999876533 44699999998765
Q ss_pred CCCCCCCCCCCCC
Q 018522 152 FERGSNRSGGGSA 164 (354)
Q Consensus 152 ~~~k~~~s~~~~~ 164 (354)
+++++|++.+
T Consensus 156 ---k~~~~~i~~~ 165 (185)
T 2fh5_A 156 ---KPVRSMIETR 165 (185)
T ss_dssp -------------
T ss_pred ---hhhhhhcccc
Confidence 6778888664
No 2
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=99.54 E-value=1.2e-14 Score=124.40 Aligned_cols=98 Identities=20% Similarity=0.382 Sum_probs=77.8
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC----c------ceeee------cCCCceEEEEEEe
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----A------SFNYD------SAGAAYTLKWTFH 64 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~----~------~~~~~------~~~d~y~lkw~~~ 64 (354)
|||||+|||++|.|||+|+|.++++...+||++|++.|.++-+.. + .|.++ ++.++|+.+|+..
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 999999999999999999999999999999999999999986422 1 56655 6679999999999
Q ss_pred cCCceEEeehhhH-hhhhhh-HHHHHHHHHHHHHHh
Q 018522 65 NELGLVFVAVYQR-ILHLLY-VDDLLAMMKQSFSEI 98 (354)
Q Consensus 65 ne~~LvfVvvyq~-il~l~y-vd~LL~~v~~~F~~~ 98 (354)
++++|||||.|.. .|+|+- .+..|+.+.+++-.+
T Consensus 81 kQP~LyfVvtyaeqsleLn~Eae~~L~l~~~LWdSL 116 (158)
T 1nrj_A 81 KQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSL 116 (158)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEecccccccCcHHHHHHHHHHHHHHhc
Confidence 9999999999954 455554 344888888877543
No 3
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.46 E-value=4.6e-14 Score=125.65 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=92.7
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCCcceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~ 80 (354)
|++.+++|++||+|||.++... .....+++.+|+.+.. +.+..+|.+ ++|+++|..+| +|+|++++++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~-gnf~~iak~ll~kl~~--~~~r~s~~~----~~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCG-GNFLEVTEQILAKIPS--ENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSC-BSHHHHHHHHHTTSCS--SCEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccCC-CCHHHHHHHHHhhCCC--CCCceEEEE----CCEEEEEEEEC--CEEEEEEEccccc
Confidence 9999999999999999876542 4566677777777765 333457999 99999999987 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHHHHH
Q 018522 81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAEAR 123 (354)
Q Consensus 81 l~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~e~~ 123 (354)
..++..||++|+.+|...|.+... .| .|++.|+.+|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 999999999999999999987532 45 6999999999765543
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.46 E-value=0.0011 Score=58.68 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=72.6
Q ss_pred eEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC--cceeeecCCCceEEEEEEecCCceEEeehhhHhhhh
Q 018522 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHL 81 (354)
Q Consensus 4 ~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~--~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~l 81 (354)
..+.+.+|.+||..++... .....+++.||-.=-... .+|.+ ++|.++|...+ +|+|+++=.+-..-
T Consensus 57 ~Ya~VArg~tiLAE~t~~~-----gnf~~va~~iL~kip~~~~r~t~~~----~~y~fHyl~~d--gl~yl~i~D~~~~r 125 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWCG-----GNFLEVTEQILAKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFER 125 (173)
T ss_dssp EEEEEEETTEEEEEEESSC-----CCHHHHHHHHHTTSCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSCH
T ss_pred EEEEEECCCEEEEEccCCC-----CCHHHHHHHHHHhCCCCCCeEEEEE----CCEEEEEEEEC--CEEEEEEECCccCh
Confidence 3567889999999876542 234577777773221112 47889 99999988865 67777774444444
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHH
Q 018522 82 LYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEA 120 (354)
Q Consensus 82 ~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~ 120 (354)
.-.-.||++|+.+|...|+.... .| .|...|..+|++.
T Consensus 126 r~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~ 166 (173)
T 4afi_A 126 SRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ 166 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence 44455788889999999976432 35 5888999998764
No 5
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=96.52 E-value=0.021 Score=50.95 Aligned_cols=105 Identities=13% Similarity=0.239 Sum_probs=66.0
Q ss_pred eEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccccCC---cceeeecCCCceEEEEEEecCCceEEeehhhHhhh
Q 018522 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL---ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (354)
Q Consensus 4 ~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~~~---~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~ 80 (354)
.++.+.+|++||=.++... .....+++.+| +..... .+|.+ ++|.++|..++ +|+|+++--.-..
T Consensus 5 lYa~VArg~~iLae~t~~~-----gnf~~ia~~iL-~kip~~~~k~s~~~----~~y~fHyl~~~--gl~yl~i~d~~yp 72 (189)
T 4b93_A 5 LFAVVARGTTILAKHAWCG-----GNFLEVTEQIL-AKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE 72 (189)
T ss_dssp EEEEEEETTEEEEEEESSE-----ECHHHHHHHHH-TTCCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred EEEEEEeCCEEEEeCCCCC-----CCHHHHHHHHH-HhCCCCCCeEEEEE----CCEEEEEEEeC--CeEEEEEEcCccC
Confidence 3567789999997664331 22445555554 333322 37999 99999987766 5788887333333
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHHH
Q 018522 81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAE 121 (354)
Q Consensus 81 l~yvd~LL~~v~~~F~~~y~~~~~---~~~~Fd~~F~~~l~e~e 121 (354)
-.-.-.||+.|+.+|...|..... .| .|...|...|++.-
T Consensus 73 ~r~af~fL~~i~~eF~~~~~~~~~~~~~~-~~~~~f~~~l~~~~ 115 (189)
T 4b93_A 73 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQL 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCCc-cccchhhHHHHHHH
Confidence 333445677788899999976532 23 46666776665543
No 6
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.19 E-value=0.03 Score=49.89 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred CcceEEEecCC--cEEEeeecccCCC--CCCCchHHHHHHhHhccc--c-CCcceeeecCCCceEEEEEEecCCceEEee
Q 018522 1 MLEQLLIFTRG--GLILWTCKELGNA--LKGSPIDTLIRSCLLEER--S-GLASFNYDSAGAAYTLKWTFHNELGLVFVA 73 (354)
Q Consensus 1 MiD~f~Iftkg--G~VLW~~~~~~~~--~~~~~iN~lI~~vlleer--~-~~~~~~~~~~~d~y~lkw~~~ne~~LvfVv 73 (354)
||-.. .+.+| |+||=.+...+.. .....+..+++.+|-.=. . ...+|.+ ++|.++|...+ +|+|++
T Consensus 2 Mi~ya-~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~----~~y~fhy~~~~--gl~~l~ 74 (196)
T 2nut_C 2 MVLLT-MIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEA----GAMTFHYIIEQ--GVCYLV 74 (196)
T ss_dssp CCCCE-EEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEE----TTEEEEEEEET--TEEEEE
T ss_pred ceEEE-EEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEe----CCEEEEEEeCC--CeEEEE
Confidence 66444 55777 9999865543211 011225566665553221 1 1247888 99999987765 577777
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHhcCCc
Q 018522 74 VYQRILHLLYVDDLLAMMKQSFSEIYDPK 102 (354)
Q Consensus 74 vyq~il~l~yvd~LL~~v~~~F~~~y~~~ 102 (354)
+--.-..-...-.||+.|+.+|...|...
T Consensus 75 i~d~~yp~r~af~fL~~i~~~F~~~~~~~ 103 (196)
T 2nut_C 75 LCEAAFPKKLAFAYLEDLHSEFDEQHGKK 103 (196)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEcCCcchHHHHHHHHHHHHHHHHhccch
Confidence 73333333344556777888898888754
No 7
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=94.44 E-value=0.1 Score=44.00 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=64.8
Q ss_pred CcceEEEecCCcEEEeeecccCC--CCCCCchHHHHHHhHhccccC-C-cceeeecCCCceEEEEEEecCCceEEeehhh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGN--ALKGSPIDTLIRSCLLEERSG-L-ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ 76 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~--~~~~~~iN~lI~~vlleer~~-~-~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq 76 (354)
||..+.|+++.|-+|-++.+.+- ......+..+.+.++ .|.. . .-+.+ +++++-|.-.+. |+||++=.
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~----~~~~~vy~~~~~--Lyfv~~~~ 72 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEF----RNFKIIYRRYAG--LYFCICVD 72 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEE----TTEEEEEEEETT--EEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEE----CCEEEEEEEECC--EEEEEEeC
Confidence 99999999999999988777521 112234555655555 3432 2 34577 889999988874 68888765
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522 77 RILHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF 113 (354)
Q Consensus 77 ~il~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F 113 (354)
.--+-.-+=++|..+...|.+.+++.. ..-++|+..+
T Consensus 73 ~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy 111 (142)
T 2vgl_S 73 VNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVY 111 (142)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444444555555566666665532 1233455555
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.05 E-value=0.16 Score=43.71 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=54.9
Q ss_pred CcceEEEecCCcEEEeeecccCCCCC--CCchHHHHHHhHhccccC--CcceeeecCCCceEEEEEEecCCceEEeehhh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALK--GSPIDTLIRSCLLEERSG--LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ 76 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~--~~~iN~lI~~vlleer~~--~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq 76 (354)
||..+.|+++.|-++-++.+.+.... ...+..+.+-+ ..|.. ..-+.+ +++++-|.-.+ +|+||++=.
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~i~~----~~~~~vy~~~~--~Lyfv~~~~ 72 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVV--LARKPKMCSFLEW----RDLKVVYKRYA--SLYFCCAIE 72 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHH--HTSCSSSCSEEEE----TTEEEEEEEET--TEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH--hccCCCCCCeEEE----CCEEEEEEEEC--CEEEEEEec
Confidence 99999999999999988777632100 01233333322 23432 234577 88999998877 468888754
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhcCC
Q 018522 77 RILHLLYVDDLLAMMKQSFSEIYDP 101 (354)
Q Consensus 77 ~il~l~yvd~LL~~v~~~F~~~y~~ 101 (354)
.--+-..+=+||..+...|.+.|++
T Consensus 73 ~~~Nel~~le~L~~~vevl~~yf~~ 97 (158)
T 1w63_Q 73 GQDNELITLELIHRYVELLDKYFGS 97 (158)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4333333344444444445555554
No 9
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.02 E-value=0.59 Score=46.22 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=66.4
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhccc--cCCcceeeecCCCceEEEEEEecCCceEEeehhhHh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEER--SGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI 78 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer--~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~i 78 (354)
||..+.|+++.|-+|-++.+.+. .....+..|.+.++-... ....-+.+ +++.+-|.-.++ |+||++-..-
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~~~~~~~~~~~~i~~----~~~~~vy~~~~~--Lyfv~~~~~~ 74 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGD-VDMSEVEHFMPILMEKEEEGMLSPILAH----GGVRFMWIKHNN--LYLVATSKKN 74 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCS-CTTTTHHHHHHHHHHHHHTSCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred ceEEEEEECCCCCEEEEEecCCC-CChHHHHHHHHHHhhccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence 99999999999999988777642 234557777766653321 22235678 889888888775 6777775443
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHH
Q 018522 79 LHLLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMF 113 (354)
Q Consensus 79 l~l~yvd~LL~~v~~~F~~~y~~~~~--~~~~Fd~~F 113 (354)
-.-..+=+||..+...+.+.|++... .-++|+..|
T Consensus 75 ~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy 111 (423)
T 1w63_M 75 ACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIY 111 (423)
T ss_dssp CCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHH
Confidence 33444445555555566666654321 233455554
No 10
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=91.61 E-value=0.62 Score=46.23 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=63.1
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhcccc--CCcceeeecCCCceEEEEEEecCCceEEeehhhHh
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERS--GLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRI 78 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlleer~--~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~i 78 (354)
||..+.|+++.|-+|-++.+.+. .....+..+.+.++ ..|. ...-+.+ +++.+-|.-.+. |+||++-..-
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~-~~~~~~~~~ii~~----~~~~~vy~~~~~--Lyfv~~~~~~ 72 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVI-HARQQVRSPVTNI----ARTSFFHVKRSN--IWLAAVTKQN 72 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSS-CCHHHHHHHHHHTT-TCSSCCCCSEEEE----TTEEEEEEEETT--EEEEEEESSC
T ss_pred CeEEEEEECCCCCEEEEEecCCC-CChhHHHHHHHHHh-ccccCCCCCEEEE----CCEEEEEEEECC--EEEEEEecCC
Confidence 99999999999999988777631 22344555555444 3232 2234678 889888887775 7888875433
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522 79 LHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF 113 (354)
Q Consensus 79 l~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F 113 (354)
-.-..+=+||..+...+.+.|+... ..-++|+..|
T Consensus 73 ~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy 109 (435)
T 2vgl_M 73 VNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIY 109 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHH
Confidence 3333344444444445555555422 1233566555
No 11
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=89.19 E-value=1.9 Score=36.88 Aligned_cols=104 Identities=11% Similarity=0.137 Sum_probs=59.6
Q ss_pred CcceEEEecCCcEEEeeecccCCCCCCCchHHHHHHhHhc-cccCCcceeeecCCCceEEEEEEecCCceEEeehhh---
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLE-ERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQ--- 76 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~~~~~iN~lI~~vlle-er~~~~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq--- 76 (354)
||-.+.|+.+.|-++-+..+.+.-.....-.+++++++-- .|.....+.+ +++++-|.-.+. |+||++-.
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~~i~~~----~~~~~vy~~~~~--Lyfv~~~~~~e 85 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALL----EGLTVVYKSSID--LYFYVIGSSYE 85 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCCCEEEE----TTEEEEEEECSS--CEEEEEEETTS
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCCEEEE----CCEEEEEEEECC--EEEEEEEcCCC
Confidence 8889999999999998766652101111123344333211 2443446778 999999988875 66776643
Q ss_pred -HhhhhhhHHHHHHHHHHHHHHhcCCcC--CCCcchHHHH
Q 018522 77 -RILHLLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMF 113 (354)
Q Consensus 77 -~il~l~yvd~LL~~v~~~F~~~y~~~~--~~~~~Fd~~F 113 (354)
.++-|.++..|.+.+..-|. ++.. ..-++|+..+
T Consensus 86 Nel~ile~L~~~ve~l~~yf~---~~v~E~~I~~Nf~~vy 122 (153)
T 3tjz_C 86 NELMLMTVLNCLFDSLSQMLR---KNVEKRALLENMEGLF 122 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT---SCCCHHHHHHTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 44455555555555544442 3322 1234566655
No 12
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=84.13 E-value=7.3 Score=32.73 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=55.9
Q ss_pred cEEEeeecccCC--CCCCCchHH---HHHHhHhccc-cC-CcceeeecCCCceEEEEEEecCCceEEeeh----hhHhhh
Q 018522 12 GLILWTCKELGN--ALKGSPIDT---LIRSCLLEER-SG-LASFNYDSAGAAYTLKWTFHNELGLVFVAV----YQRILH 80 (354)
Q Consensus 12 G~VLW~~~~~~~--~~~~~~iN~---lI~~vlleer-~~-~~~~~~~~~~d~y~lkw~~~ne~~LvfVvv----yq~il~ 80 (354)
+++|=...-... -+-.+.|-. +|...|++-- .+ ..+|.+ ++|.++|... +-+|+||++ |++-+-
T Consensus 20 ~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~----~~y~fH~~~~-~~gl~~l~i~D~~yp~rvA 94 (144)
T 3bw6_A 20 ALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEE----GNYIGHVYAR-SEGICGVLITDKEYPVRPA 94 (144)
T ss_dssp CEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEE----TTEEEEEEEC-TTSEEEEEEEETTSCHHHH
T ss_pred CeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEe----CCEEEEEEEe-cCCEEEEEEECCCCChhHH
Confidence 777754332211 123444553 3444454421 12 247899 9999988832 346778777 766665
Q ss_pred hhhHHHHHHHHHHHHHHhcCCc-CC---C---CcchHHHHHHHHHH
Q 018522 81 LLYVDDLLAMMKQSFSEIYDPK-RT---D---YSDFDEMFRQLRKE 119 (354)
Q Consensus 81 l~yvd~LL~~v~~~F~~~y~~~-~~---~---~~~Fd~~F~~~l~e 119 (354)
-+| |++|+.+|...|... .. . -..| ..|+.+|..
T Consensus 95 F~~----L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i~k 135 (144)
T 3bw6_A 95 YTL----LNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYISK 135 (144)
T ss_dssp HHH----HHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHHHH
T ss_pred HHH----HHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHHHH
Confidence 554 667788899989654 21 1 2246 566666643
No 13
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=67.38 E-value=9.4 Score=33.98 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred ceeeecCCCceEEE-EEEecCCceEEeeh----hhHhhhhhhHHHHHHHHHHHHHHhcCC
Q 018522 47 SFNYDSAGAAYTLK-WTFHNELGLVFVAV----YQRILHLLYVDDLLAMMKQSFSEIYDP 101 (354)
Q Consensus 47 ~~~~~~~~d~y~lk-w~~~ne~~LvfVvv----yq~il~l~yvd~LL~~v~~~F~~~y~~ 101 (354)
+|.+ ++|.++ |...+ +|+|+++ |.+-+-.. ||++|+.+|...|..
T Consensus 59 s~~~----~~y~fH~y~~~~--gl~yl~itd~~yp~r~AF~----fL~ei~~eF~~~~~~ 108 (199)
T 3kyq_A 59 SVKE----QEYLCHVYVRSD--SLAGVVIADSEYPSRVAFT----LLEKVLDEFSKQVDR 108 (199)
T ss_dssp EEEC----SSEEEEEEECTT--SEEEEEEEETTSCHHHHHH----HHHHHHHHHHHHSCG
T ss_pred EEEe----CCEEEEEEEecC--CEEEEEEECCCCCHHHHHH----HHHHHHHHHHHhccc
Confidence 6888 999988 66655 6777776 66555444 666778889999864
No 14
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.14 E-value=2.7 Score=40.16 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=26.1
Q ss_pred hccCcccchhchHHHHHHHHHHhhhcccc
Q 018522 324 IAGKANLDKADLEPALKALKDRLMTKNVV 352 (354)
Q Consensus 324 lvG~K~LT~eDLePvL~kMkdhLi~KNVA 352 (354)
.+|...||++|++++|+.|+++|+..+|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Ll~adv~ 69 (328)
T 3e70_C 41 RILTVEIKEKDVDKALDELEIDLLEADVA 69 (328)
T ss_dssp -CCEEECCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 45688999999999999999999999986
No 15
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=42.92 E-value=1.4e+02 Score=24.57 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=67.0
Q ss_pred cceEEEecCCcEEEeeecccCCCCCCCc-----hHHH-HHHh--HhccccC--Cc-----ceeeecCCCceEEEEEEecC
Q 018522 2 LEQLLIFTRGGLILWTCKELGNALKGSP-----IDTL-IRSC--LLEERSG--LA-----SFNYDSAGAAYTLKWTFHNE 66 (354)
Q Consensus 2 iD~f~IftkgG~VLW~~~~~~~~~~~~~-----iN~l-I~~v--lleer~~--~~-----~~~~~~~~d~y~lkw~~~ne 66 (354)
+=.|+||.+.|..|+.+.+....-.... ...+ +... +++++.. .+ .+.. +.|.+..... .
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~----~~y~v~~~~T-~ 80 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKF----NEWFVSAFVT-A 80 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEE----TTEEEEEEEC-T
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecc----cceEEEEEEc-C
Confidence 3579999999999998776532110001 1111 2222 3455431 11 3445 6677766654 4
Q ss_pred CceEEeehhhHhhhhhhHHHHHHHHHHHHHHhcCCcC------CCCcchHHHHHHHHHHH
Q 018522 67 LGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKR------TDYSDFDEMFRQLRKEA 120 (354)
Q Consensus 67 ~~LvfVvvyq~il~l~yvd~LL~~v~~~F~~~y~~~~------~~~~~Fd~~F~~~l~e~ 120 (354)
-++=||+++..- .-.-|..||..|+..|++.--+.. -....||..-+++++.+
T Consensus 81 tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 81 GHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp TCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHh
Confidence 567788777531 355688899999998888443321 13455888777777653
No 16
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=41.82 E-value=2e+02 Score=26.00 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=46.1
Q ss_pred cceeeecCCCceEEEEEEecCCceEEeehhhHhhh----------------------hhhHHHHHHHHHHHHHHh-cCCc
Q 018522 46 ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH----------------------LLYVDDLLAMMKQSFSEI-YDPK 102 (354)
Q Consensus 46 ~~~~~~~~~d~y~lkw~~~ne~~LvfVvvyq~il~----------------------l~yvd~LL~~v~~~F~~~-y~~~ 102 (354)
..|.. +.|.+.+...+ -++=||++++.-.. -.-|+.||..|...|++. -++.
T Consensus 120 ~~~~T----d~y~l~~f~T~-TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNP 194 (219)
T 3cue_A 120 RQLCT----DQFTMFIYQTL-TGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDP 194 (219)
T ss_dssp CEEEE----SSCEEEEEECT-TSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEe----CCEEEEEEEcC-CCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35667 88887776654 46888888865320 156889999999999883 3332
Q ss_pred C------CCCcchHHHHHHHHHHH
Q 018522 103 R------TDYSDFDEMFRQLRKEA 120 (354)
Q Consensus 103 ~------~~~~~Fd~~F~~~l~e~ 120 (354)
. -...-||..-+++++.+
T Consensus 195 FY~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 195 SYSMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp TCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHhc
Confidence 1 13445887777777643
No 17
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=38.29 E-value=1.7e+02 Score=24.29 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=65.2
Q ss_pred CcceEEEecCCcEEEeeecccCCCC-CCCchHHH--HHHh------Hhcc---ccC---CcceeeecCCCceEEEEEEec
Q 018522 1 MLEQLLIFTRGGLILWTCKELGNAL-KGSPIDTL--IRSC------LLEE---RSG---LASFNYDSAGAAYTLKWTFHN 65 (354)
Q Consensus 1 MiD~f~IftkgG~VLW~~~~~~~~~-~~~~iN~l--I~~v------llee---r~~---~~~~~~~~~~d~y~lkw~~~n 65 (354)
|+=.|.||.+.|..|+...+..... ..+.-|.. +..+ |.++ ..+ -..|.. +.|.+.+...+
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t----~~ykl~~~~T~ 77 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQT----SRYKLHYYETP 77 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEEC----SSCEEEEEECT
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEec----CCEEEEEEEcC
Confidence 3567999999999999876653221 11112322 1111 1222 112 135566 88988887755
Q ss_pred CCceEEeehhhHhhhhhhHHHHHHHHH-HHHHHh-cCCcC------CCCcchHHHHHHHHH
Q 018522 66 ELGLVFVAVYQRILHLLYVDDLLAMMK-QSFSEI-YDPKR------TDYSDFDEMFRQLRK 118 (354)
Q Consensus 66 e~~LvfVvvyq~il~l~yvd~LL~~v~-~~F~~~-y~~~~------~~~~~Fd~~F~~~l~ 118 (354)
-++=||+++.. .-.-|..+|..|+ ..|++. -++.. -....||..-+++++
T Consensus 78 -TgiKFvl~td~--~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~ 135 (145)
T 2j3t_C 78 -TGIKVVMNTDL--GVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135 (145)
T ss_dssp -TSCEEEEEECT--TCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHT
T ss_pred -CCCEEEEEecC--CcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHH
Confidence 36778777754 2556889999999 688883 33322 134457666655553
Done!