Query 018523
Match_columns 354
No_of_seqs 146 out of 1668
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 8.8E-44 1.9E-48 344.8 34.9 352 1-352 213-564 (567)
2 PLN02487 zeta-carotene desatur 100.0 1.6E-38 3.5E-43 304.7 33.8 338 1-343 192-560 (569)
3 TIGR02731 phytoene_desat phyto 100.0 5.3E-38 1.1E-42 299.5 33.5 330 2-333 119-453 (453)
4 TIGR02732 zeta_caro_desat caro 100.0 1.3E-37 2.8E-42 296.4 32.5 328 1-333 116-474 (474)
5 TIGR03467 HpnE squalene-associ 100.0 2.7E-34 5.9E-39 271.7 32.4 314 2-334 105-419 (419)
6 PRK07233 hypothetical protein; 100.0 6.4E-31 1.4E-35 249.8 31.9 320 2-337 105-432 (434)
7 TIGR00562 proto_IX_ox protopor 100.0 1.1E-28 2.3E-33 236.3 24.2 290 28-336 134-460 (462)
8 PLN02576 protoporphyrinogen ox 100.0 2.6E-28 5.7E-33 235.5 26.3 316 1-337 120-488 (496)
9 PRK12416 protoporphyrinogen ox 100.0 2.6E-28 5.6E-33 233.5 25.7 309 2-337 123-462 (463)
10 COG1232 HemY Protoporphyrinoge 100.0 1.5E-27 3.2E-32 220.3 23.0 289 23-333 127-443 (444)
11 PRK11883 protoporphyrinogen ox 100.0 3.5E-27 7.5E-32 225.3 25.1 288 25-334 135-450 (451)
12 PRK07208 hypothetical protein; 100.0 1.3E-26 2.8E-31 222.8 28.8 299 28-336 130-461 (479)
13 TIGR02733 desat_CrtD C-3',4' d 99.9 5.7E-25 1.2E-29 211.9 26.3 292 28-335 167-491 (492)
14 PLN02268 probable polyamine ox 99.9 1.6E-25 3.5E-30 212.6 19.5 282 27-336 130-434 (435)
15 PLN02676 polyamine oxidase 99.9 4.7E-25 1E-29 210.5 21.0 294 27-338 155-475 (487)
16 COG1231 Monoamine oxidase [Ami 99.9 6.5E-25 1.4E-29 198.3 16.0 236 90-337 204-448 (450)
17 PLN02568 polyamine oxidase 99.9 3.5E-24 7.7E-29 205.9 21.0 298 30-338 160-537 (539)
18 TIGR02730 carot_isom carotene 99.9 1.5E-22 3.3E-27 194.9 28.7 291 29-336 168-492 (493)
19 TIGR02734 crtI_fam phytoene de 99.9 6.9E-23 1.5E-27 198.0 25.5 290 27-336 158-492 (502)
20 PLN02529 lysine-specific histo 99.9 4.4E-23 9.6E-28 202.3 23.8 288 27-338 285-600 (738)
21 PLN02976 amine oxidase 99.9 5.3E-23 1.1E-27 207.8 21.4 256 60-337 904-1187(1713)
22 COG3349 Uncharacterized conser 99.9 3.4E-23 7.3E-28 190.7 17.7 330 1-337 119-464 (485)
23 PF01593 Amino_oxidase: Flavin 99.9 4E-24 8.6E-29 202.7 11.6 293 25-333 137-450 (450)
24 PLN02328 lysine-specific histo 99.9 2.1E-22 4.5E-27 198.4 23.6 235 87-341 429-684 (808)
25 PLN03000 amine oxidase 99.9 1.5E-22 3.2E-27 199.4 22.3 235 87-342 373-629 (881)
26 KOG4254 Phytoene desaturase [C 99.8 6.7E-19 1.4E-23 157.7 23.5 285 33-337 207-547 (561)
27 KOG1276 Protoporphyrinogen oxi 99.8 1.6E-18 3.4E-23 154.6 17.9 289 27-333 152-490 (491)
28 KOG0685 Flavin-containing amin 99.8 1.3E-18 2.9E-23 157.5 15.7 298 28-338 145-493 (498)
29 COG3380 Predicted NAD/FAD-depe 99.7 1.7E-18 3.6E-23 145.8 5.8 217 97-336 109-331 (331)
30 KOG0029 Amine oxidase [Seconda 99.7 2.3E-16 5E-21 149.6 16.9 234 89-341 213-464 (501)
31 COG1233 Phytoene dehydrogenase 99.7 7E-16 1.5E-20 147.8 18.9 285 28-335 164-482 (487)
32 PTZ00363 rab-GDP dissociation 99.3 1.4E-10 3.1E-15 109.2 16.5 148 1-151 131-287 (443)
33 COG2907 Predicted NAD/FAD-bind 99.2 2.9E-10 6.4E-15 99.7 13.4 152 24-185 144-302 (447)
34 PRK13977 myosin-cross-reactive 98.8 1.7E-07 3.6E-12 89.9 13.8 123 24-152 156-291 (576)
35 PF00996 GDI: GDP dissociation 98.5 1E-05 2.2E-10 75.8 16.5 144 1-149 131-284 (438)
36 PF01266 DAO: FAD dependent ox 98.1 1.6E-05 3.5E-10 73.3 9.6 68 87-156 136-205 (358)
37 TIGR02352 thiamin_ThiO glycine 98.0 0.00034 7.3E-09 64.1 16.9 68 87-156 126-195 (337)
38 PF07156 Prenylcys_lyase: Pren 98.0 1.6E-05 3.4E-10 73.2 7.1 119 27-156 66-189 (368)
39 TIGR01373 soxB sarcosine oxida 97.8 0.0034 7.4E-08 59.3 20.3 197 97-335 184-385 (407)
40 PRK00711 D-amino acid dehydrog 97.7 0.0042 9E-08 58.8 19.0 56 97-154 202-257 (416)
41 KOG2820 FAD-dependent oxidored 97.7 0.0047 1E-07 55.0 16.4 60 99-158 156-216 (399)
42 PRK10015 oxidoreductase; Provi 97.6 0.0089 1.9E-07 56.9 19.5 53 100-154 112-164 (429)
43 KOG1439 RAB proteins geranylge 97.6 0.00044 9.6E-09 62.6 9.4 145 1-149 131-284 (440)
44 PF06100 Strep_67kDa_ant: Stre 97.5 0.0019 4.1E-08 60.8 12.3 138 2-152 122-272 (500)
45 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.0067 1.5E-07 56.7 16.2 66 87-155 124-191 (381)
46 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00011 2.4E-09 68.0 2.8 115 31-157 129-250 (377)
47 COG2081 Predicted flavoprotein 97.3 0.0016 3.5E-08 59.4 9.8 62 88-152 103-165 (408)
48 PRK06847 hypothetical protein; 97.2 0.047 1E-06 50.8 19.0 56 97-154 108-163 (375)
49 TIGR03329 Phn_aa_oxid putative 97.2 0.027 6E-07 54.1 17.7 55 96-154 183-237 (460)
50 COG0644 FixC Dehydrogenases (f 97.2 0.039 8.4E-07 51.9 18.4 59 98-157 97-156 (396)
51 PRK12409 D-amino acid dehydrog 97.1 0.052 1.1E-06 51.2 18.3 58 96-155 197-259 (410)
52 TIGR01988 Ubi-OHases Ubiquinon 97.1 0.046 1E-06 51.0 17.6 55 97-153 107-162 (385)
53 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.063 1.4E-06 50.1 18.3 62 96-159 105-168 (382)
54 PRK08773 2-octaprenyl-3-methyl 97.1 0.03 6.5E-07 52.5 16.0 56 97-154 114-169 (392)
55 PRK07333 2-octaprenyl-6-methox 97.1 0.061 1.3E-06 50.6 18.0 60 97-158 112-172 (403)
56 TIGR02032 GG-red-SF geranylger 97.0 0.092 2E-06 46.8 18.3 55 97-153 92-147 (295)
57 PRK07045 putative monooxygenas 97.0 0.05 1.1E-06 51.0 17.1 61 97-157 107-169 (388)
58 COG2509 Uncharacterized FAD-de 97.0 0.0023 4.9E-08 59.3 7.3 57 96-153 173-229 (486)
59 PRK10157 putative oxidoreducta 97.0 0.0097 2.1E-07 56.6 11.6 55 98-154 110-164 (428)
60 COG0579 Predicted dehydrogenas 97.0 0.0029 6.3E-08 59.2 7.8 60 96-156 153-213 (429)
61 PRK07494 2-octaprenyl-6-methox 96.9 0.047 1E-06 51.1 16.0 55 97-153 112-166 (388)
62 TIGR01377 soxA_mon sarcosine o 96.9 0.24 5.1E-06 46.2 20.2 55 96-153 145-199 (380)
63 PF03486 HI0933_like: HI0933-l 96.9 0.0027 5.9E-08 59.6 6.7 67 87-154 100-166 (409)
64 PRK11259 solA N-methyltryptoph 96.7 0.35 7.7E-06 44.9 20.2 55 97-154 150-204 (376)
65 PRK06185 hypothetical protein; 96.5 0.3 6.5E-06 46.0 18.2 62 97-159 109-175 (407)
66 PF13738 Pyr_redox_3: Pyridine 96.5 0.0055 1.2E-07 51.6 5.5 56 96-153 82-137 (203)
67 COG0654 UbiH 2-polyprenyl-6-me 96.4 0.21 4.6E-06 46.8 16.5 63 96-160 104-169 (387)
68 TIGR03378 glycerol3P_GlpB glyc 96.4 0.0095 2.1E-07 55.8 7.2 62 96-158 263-326 (419)
69 PRK09126 hypothetical protein; 96.4 0.23 4.9E-06 46.5 16.3 60 98-159 112-173 (392)
70 PRK08020 ubiF 2-octaprenyl-3-m 96.4 0.3 6.6E-06 45.7 17.1 61 97-159 113-175 (391)
71 PRK06184 hypothetical protein; 96.3 0.66 1.4E-05 45.1 19.6 60 98-159 111-174 (502)
72 TIGR02485 CobZ_N-term precorri 96.3 0.015 3.3E-07 55.4 8.0 57 96-152 123-181 (432)
73 KOG4405 GDP dissociation inhib 96.3 0.047 1E-06 50.0 10.3 143 2-149 190-340 (547)
74 PRK07608 ubiquinone biosynthes 96.2 0.46 9.9E-06 44.4 17.1 60 97-159 112-173 (388)
75 PRK08244 hypothetical protein; 96.1 0.87 1.9E-05 44.2 19.4 61 97-159 101-165 (493)
76 PRK01747 mnmC bifunctional tRN 96.1 0.26 5.6E-06 49.8 16.1 66 87-155 397-464 (662)
77 PRK08850 2-octaprenyl-6-methox 96.1 0.55 1.2E-05 44.3 17.3 61 97-159 112-174 (405)
78 PRK07588 hypothetical protein; 95.9 0.5 1.1E-05 44.3 16.2 55 97-154 104-158 (391)
79 TIGR01790 carotene-cycl lycope 95.9 1.5 3.3E-05 40.9 21.0 57 96-154 85-141 (388)
80 PRK05732 2-octaprenyl-6-methox 95.9 0.92 2E-05 42.4 17.9 54 98-153 114-168 (395)
81 PRK07364 2-octaprenyl-6-methox 95.9 0.7 1.5E-05 43.6 17.1 61 97-159 122-187 (415)
82 COG0665 DadA Glycine/D-amino a 95.8 1 2.2E-05 41.9 17.7 66 87-155 145-213 (387)
83 PLN02463 lycopene beta cyclase 95.7 2 4.4E-05 41.0 19.6 54 97-153 115-168 (447)
84 PRK08013 oxidoreductase; Provi 95.7 1.3 2.8E-05 41.7 18.0 61 97-159 112-174 (400)
85 PRK08849 2-octaprenyl-3-methyl 95.7 1.5 3.2E-05 41.0 18.2 56 98-155 112-168 (384)
86 TIGR03862 flavo_PP4765 unchara 95.6 0.039 8.5E-07 51.1 7.3 64 87-154 77-141 (376)
87 PRK06183 mhpA 3-(3-hydroxyphen 95.6 1.6 3.6E-05 42.8 19.0 60 98-159 115-180 (538)
88 PRK06996 hypothetical protein; 95.6 1.3 2.8E-05 41.7 17.6 60 97-158 116-180 (398)
89 PTZ00383 malate:quinone oxidor 95.5 0.048 1E-06 52.7 7.7 59 96-156 211-275 (497)
90 PF00070 Pyr_redox: Pyridine n 95.5 0.041 8.8E-07 38.8 5.3 41 96-138 40-80 (80)
91 PF00890 FAD_binding_2: FAD bi 95.3 0.051 1.1E-06 51.4 7.0 58 96-154 141-203 (417)
92 PRK11101 glpA sn-glycerol-3-ph 95.3 0.057 1.2E-06 53.1 7.4 67 87-154 139-211 (546)
93 TIGR01320 mal_quin_oxido malat 95.2 0.075 1.6E-06 51.3 7.8 68 87-155 167-241 (483)
94 PRK11728 hydroxyglutarate oxid 95.1 0.07 1.5E-06 50.1 7.3 56 96-154 149-204 (393)
95 PRK12835 3-ketosteroid-delta-1 95.1 0.071 1.5E-06 52.8 7.6 57 96-152 213-273 (584)
96 PRK05257 malate:quinone oxidor 95.1 0.082 1.8E-06 51.2 7.8 59 96-155 183-247 (494)
97 PRK07121 hypothetical protein; 95.1 0.079 1.7E-06 51.4 7.8 58 96-153 177-238 (492)
98 TIGR03377 glycerol3P_GlpA glyc 95.1 0.066 1.4E-06 52.3 7.2 68 87-155 118-191 (516)
99 TIGR01989 COQ6 Ubiquinone bios 94.9 1.7 3.7E-05 41.4 16.3 62 97-159 118-189 (437)
100 PRK12845 3-ketosteroid-delta-1 94.9 0.078 1.7E-06 52.3 7.0 60 90-152 213-276 (564)
101 PF01494 FAD_binding_3: FAD bi 94.8 0.68 1.5E-05 42.3 13.1 63 97-160 112-179 (356)
102 TIGR01813 flavo_cyto_c flavocy 94.8 0.097 2.1E-06 50.0 7.6 56 97-152 131-190 (439)
103 PRK06116 glutathione reductase 94.8 0.098 2.1E-06 50.1 7.4 55 97-152 209-263 (450)
104 PRK04176 ribulose-1,5-biphosph 94.8 0.12 2.5E-06 45.6 7.2 57 96-152 104-171 (257)
105 PRK08243 4-hydroxybenzoate 3-m 94.7 3.7 8E-05 38.5 19.4 63 97-160 104-170 (392)
106 PLN02464 glycerol-3-phosphate 94.7 0.12 2.6E-06 51.6 8.0 59 96-154 232-296 (627)
107 PRK08274 tricarballylate dehyd 94.7 0.12 2.5E-06 49.9 7.7 56 96-152 131-190 (466)
108 COG1252 Ndh NADH dehydrogenase 94.6 0.075 1.6E-06 49.6 5.9 52 95-152 208-260 (405)
109 PRK05329 anaerobic glycerol-3- 94.6 0.13 2.9E-06 48.6 7.5 55 97-152 260-316 (422)
110 PRK05675 sdhA succinate dehydr 94.5 0.16 3.5E-06 50.2 8.4 59 96-154 126-189 (570)
111 PF05834 Lycopene_cycl: Lycope 94.4 4.3 9.4E-05 37.8 20.1 55 96-153 87-141 (374)
112 PRK06134 putative FAD-binding 94.2 0.12 2.7E-06 51.1 6.8 58 96-154 217-278 (581)
113 PRK06617 2-octaprenyl-6-methox 94.2 4.5 9.7E-05 37.6 16.9 60 97-159 105-166 (374)
114 PF06039 Mqo: Malate:quinone o 94.2 0.19 4.2E-06 47.2 7.4 62 96-158 181-248 (488)
115 TIGR00275 flavoprotein, HI0933 94.1 0.19 4.1E-06 47.4 7.7 56 96-154 105-160 (400)
116 PRK09078 sdhA succinate dehydr 94.1 0.2 4.3E-06 49.9 8.0 58 96-153 149-211 (598)
117 TIGR01816 sdhA_forward succina 94.0 0.23 5E-06 49.1 8.3 57 96-153 119-180 (565)
118 PF13454 NAD_binding_9: FAD-NA 94.0 0.19 4.1E-06 40.5 6.4 41 110-152 114-155 (156)
119 KOG1336 Monodehydroascorbate/f 94.0 0.14 3.1E-06 48.0 6.2 59 96-154 255-313 (478)
120 PRK06481 fumarate reductase fl 93.9 0.18 3.9E-06 49.1 7.3 54 97-151 191-248 (506)
121 PRK12843 putative FAD-binding 93.8 0.17 3.8E-06 50.1 7.1 56 96-152 221-280 (578)
122 PF01134 GIDA: Glucose inhibit 93.8 0.25 5.5E-06 45.9 7.6 54 97-152 96-150 (392)
123 PRK08958 sdhA succinate dehydr 93.8 0.27 6E-06 48.8 8.3 58 96-153 143-205 (588)
124 COG5044 MRS6 RAB proteins gera 93.7 0.51 1.1E-05 42.9 9.0 141 1-149 132-279 (434)
125 PRK12844 3-ketosteroid-delta-1 93.7 0.18 3.9E-06 49.7 7.0 56 96-152 208-267 (557)
126 PRK08132 FAD-dependent oxidore 93.7 7.8 0.00017 38.2 20.3 61 98-160 127-192 (547)
127 PRK12839 hypothetical protein; 93.6 0.25 5.5E-06 48.8 7.7 57 96-152 214-274 (572)
128 TIGR00292 thiazole biosynthesi 93.4 0.37 8.1E-06 42.3 7.8 56 97-152 101-168 (254)
129 TIGR01811 sdhA_Bsu succinate d 93.4 0.34 7.5E-06 48.2 8.4 57 96-152 129-194 (603)
130 PRK13339 malate:quinone oxidor 93.4 0.32 6.9E-06 47.1 7.9 59 96-155 184-248 (497)
131 PRK05714 2-octaprenyl-3-methyl 93.3 0.27 5.9E-06 46.3 7.3 62 97-160 113-175 (405)
132 PRK06175 L-aspartate oxidase; 93.3 0.38 8.2E-06 45.9 8.1 56 96-152 128-187 (433)
133 PRK06834 hypothetical protein; 93.2 0.28 6E-06 47.6 7.2 61 97-159 101-162 (488)
134 PRK14989 nitrite reductase sub 93.2 0.3 6.6E-06 50.5 7.8 54 99-152 190-243 (847)
135 PRK07190 hypothetical protein; 93.1 0.37 8.1E-06 46.7 7.9 60 98-159 111-171 (487)
136 PLN02697 lycopene epsilon cycl 93.1 9.5 0.00021 37.4 22.4 56 97-154 193-248 (529)
137 PRK12842 putative succinate de 93.0 0.33 7.2E-06 48.1 7.5 57 96-153 214-274 (574)
138 PRK04965 NADH:flavorubredoxin 92.9 0.3 6.6E-06 45.5 6.9 53 98-152 185-237 (377)
139 PRK07057 sdhA succinate dehydr 92.9 0.45 9.7E-06 47.3 8.2 58 96-153 148-210 (591)
140 TIGR01423 trypano_reduc trypan 92.8 0.38 8.3E-06 46.5 7.5 56 96-152 231-286 (486)
141 PRK06263 sdhA succinate dehydr 92.8 0.35 7.7E-06 47.5 7.4 58 96-153 134-196 (543)
142 COG0578 GlpA Glycerol-3-phosph 92.8 0.24 5.3E-06 47.7 6.0 68 87-156 154-227 (532)
143 PRK12266 glpD glycerol-3-phosp 92.8 0.32 6.9E-06 47.4 7.0 66 87-154 145-216 (508)
144 TIGR01421 gluta_reduc_1 glutat 92.8 0.4 8.8E-06 45.9 7.6 56 97-153 208-264 (450)
145 PRK07573 sdhA succinate dehydr 92.7 0.39 8.4E-06 48.2 7.6 52 100-152 174-230 (640)
146 PRK05249 soluble pyridine nucl 92.7 0.34 7.3E-06 46.6 7.0 55 97-153 217-271 (461)
147 PTZ00139 Succinate dehydrogena 92.7 0.36 7.8E-06 48.2 7.3 57 96-152 166-227 (617)
148 PRK07843 3-ketosteroid-delta-1 92.7 0.33 7.1E-06 47.9 7.0 56 96-152 208-267 (557)
149 PRK06126 hypothetical protein; 92.7 11 0.00024 37.1 19.4 60 98-159 128-194 (545)
150 COG4716 Myosin-crossreactive a 92.7 0.83 1.8E-05 41.8 8.7 119 25-150 158-288 (587)
151 PRK08275 putative oxidoreducta 92.7 0.37 8.1E-06 47.5 7.3 58 96-153 137-199 (554)
152 PRK08205 sdhA succinate dehydr 92.6 0.38 8.2E-06 47.8 7.4 59 96-154 140-206 (583)
153 PRK11445 putative oxidoreducta 92.6 8.4 0.00018 35.5 19.9 50 108-159 110-163 (351)
154 KOG1335 Dihydrolipoamide dehyd 92.4 0.48 1E-05 43.4 6.9 61 91-152 247-312 (506)
155 PRK07845 flavoprotein disulfid 92.3 0.43 9.3E-06 46.0 7.2 54 97-152 219-272 (466)
156 TIGR01424 gluta_reduc_2 glutat 92.3 0.41 9E-06 45.8 7.0 54 97-152 208-261 (446)
157 PRK06416 dihydrolipoamide dehy 92.3 0.46 9.9E-06 45.7 7.3 55 97-153 214-271 (462)
158 PLN02507 glutathione reductase 92.2 0.44 9.6E-06 46.3 7.1 56 96-153 244-299 (499)
159 PRK09754 phenylpropionate diox 92.2 0.5 1.1E-05 44.5 7.3 51 99-152 189-239 (396)
160 TIGR01812 sdhA_frdA_Gneg succi 92.2 0.54 1.2E-05 46.5 7.8 57 96-153 129-190 (566)
161 PRK13369 glycerol-3-phosphate 92.2 0.47 1E-05 46.2 7.3 57 96-154 155-215 (502)
162 PRK06452 sdhA succinate dehydr 92.1 0.44 9.6E-06 47.1 7.1 58 96-154 136-198 (566)
163 PTZ00318 NADH dehydrogenase-li 92.0 0.41 8.9E-06 45.5 6.5 50 97-152 229-278 (424)
164 TIGR01292 TRX_reduct thioredox 92.0 0.55 1.2E-05 41.9 7.1 54 97-153 58-111 (300)
165 TIGR03364 HpnW_proposed FAD de 91.9 0.43 9.2E-06 44.2 6.4 52 96-154 145-197 (365)
166 PLN00128 Succinate dehydrogena 91.8 0.63 1.4E-05 46.6 7.8 57 96-152 187-248 (635)
167 TIGR02023 BchP-ChlP geranylger 91.8 11 0.00024 35.2 20.4 37 301-337 264-303 (388)
168 PRK05945 sdhA succinate dehydr 91.7 0.75 1.6E-05 45.6 8.2 57 96-153 135-196 (575)
169 TIGR01350 lipoamide_DH dihydro 91.7 0.64 1.4E-05 44.7 7.6 54 97-152 212-267 (461)
170 PRK07804 L-aspartate oxidase; 91.7 0.63 1.4E-05 45.8 7.6 58 96-153 144-209 (541)
171 TIGR02374 nitri_red_nirB nitri 91.7 0.55 1.2E-05 48.3 7.5 52 99-152 185-236 (785)
172 PRK12837 3-ketosteroid-delta-1 91.7 0.55 1.2E-05 45.8 7.1 55 97-152 174-233 (513)
173 COG1249 Lpd Pyruvate/2-oxoglut 91.5 0.61 1.3E-05 44.5 7.0 55 96-152 214-270 (454)
174 KOG2844 Dimethylglycine dehydr 91.4 0.36 7.8E-06 47.3 5.3 66 87-154 176-243 (856)
175 PF04820 Trp_halogenase: Trypt 91.3 0.72 1.6E-05 44.2 7.4 57 97-154 155-211 (454)
176 TIGR03140 AhpF alkyl hydropero 91.3 0.59 1.3E-05 45.7 6.9 56 96-153 267-322 (515)
177 PRK05976 dihydrolipoamide dehy 91.3 0.85 1.8E-05 44.0 7.9 57 97-153 222-280 (472)
178 PRK08163 salicylate hydroxylas 91.3 0.77 1.7E-05 43.0 7.5 57 97-155 110-167 (396)
179 PRK07512 L-aspartate oxidase; 91.0 0.46 9.9E-06 46.4 5.8 57 96-153 136-196 (513)
180 PLN00093 geranylgeranyl diphos 90.9 15 0.00034 35.2 21.7 37 300-336 308-347 (450)
181 PRK15317 alkyl hydroperoxide r 90.8 0.73 1.6E-05 45.1 7.0 56 96-153 266-321 (517)
182 PRK08401 L-aspartate oxidase; 90.8 0.81 1.8E-05 44.1 7.2 56 96-154 120-175 (466)
183 TIGR00551 nadB L-aspartate oxi 90.5 0.84 1.8E-05 44.3 7.2 58 96-154 128-189 (488)
184 PRK08626 fumarate reductase fl 90.5 0.97 2.1E-05 45.5 7.7 56 96-152 158-218 (657)
185 PRK07395 L-aspartate oxidase; 90.5 0.73 1.6E-05 45.4 6.7 57 96-152 134-195 (553)
186 PRK09897 hypothetical protein; 90.4 0.76 1.7E-05 44.9 6.7 53 98-152 109-164 (534)
187 PRK12834 putative FAD-binding 90.3 0.82 1.8E-05 45.1 7.0 55 97-152 149-225 (549)
188 TIGR00136 gidA glucose-inhibit 90.3 0.99 2.2E-05 44.6 7.3 56 98-154 98-154 (617)
189 KOG0042 Glycerol-3-phosphate d 90.1 2.4 5.2E-05 40.8 9.3 66 87-152 214-285 (680)
190 PRK06327 dihydrolipoamide dehy 90.0 1 2.3E-05 43.4 7.3 54 97-152 225-282 (475)
191 TIGR03385 CoA_CoA_reduc CoA-di 89.9 1.1 2.3E-05 42.7 7.2 53 97-153 180-232 (427)
192 TIGR03169 Nterm_to_SelD pyridi 89.9 0.83 1.8E-05 42.3 6.3 50 97-152 192-241 (364)
193 PRK07818 dihydrolipoamide dehy 89.8 1.3 2.7E-05 42.7 7.7 54 97-152 214-271 (466)
194 PRK06370 mercuric reductase; V 89.8 1.2 2.7E-05 42.8 7.6 53 98-152 214-269 (463)
195 TIGR02028 ChlP geranylgeranyl 89.6 18 0.0004 33.9 20.6 36 301-336 270-308 (398)
196 PTZ00058 glutathione reductase 89.4 1.5 3.3E-05 43.2 7.9 55 97-152 279-334 (561)
197 PRK07251 pyridine nucleotide-d 89.4 1.2 2.7E-05 42.4 7.2 53 97-152 199-251 (438)
198 PF00732 GMC_oxred_N: GMC oxid 89.2 0.63 1.4E-05 41.7 4.8 50 109-158 206-262 (296)
199 PTZ00052 thioredoxin reductase 89.0 1.4 3.1E-05 42.9 7.4 54 98-153 224-277 (499)
200 PRK08294 phenol 2-monooxygenas 89.0 27 0.0006 35.1 21.6 62 97-159 142-216 (634)
201 KOG1346 Programmed cell death 88.9 1.1 2.3E-05 41.6 5.9 66 91-158 384-453 (659)
202 PRK08010 pyridine nucleotide-d 88.8 1.4 3.1E-05 42.0 7.2 53 97-152 200-252 (441)
203 PTZ00306 NADH-dependent fumara 88.6 1.3 2.9E-05 47.7 7.4 56 97-152 545-618 (1167)
204 PRK06854 adenylylsulfate reduc 88.5 1.4 3E-05 44.0 7.1 56 97-153 133-194 (608)
205 PLN02172 flavin-containing mon 88.5 1.1 2.4E-05 43.0 6.2 57 97-155 112-174 (461)
206 PRK09564 coenzyme A disulfide 88.3 1.8 3.8E-05 41.4 7.5 54 96-152 191-244 (444)
207 PRK10262 thioredoxin reductase 88.2 1.3 2.8E-05 40.3 6.2 54 98-152 187-246 (321)
208 PRK08071 L-aspartate oxidase; 88.2 1.2 2.5E-05 43.6 6.2 54 97-152 131-188 (510)
209 PRK06115 dihydrolipoamide dehy 88.1 1.9 4.1E-05 41.5 7.6 55 97-153 216-275 (466)
210 TIGR02053 MerA mercuric reduct 87.9 1.8 4E-05 41.6 7.4 54 97-152 208-264 (463)
211 TIGR01316 gltA glutamate synth 87.9 2 4.3E-05 41.2 7.5 50 103-152 316-385 (449)
212 PRK07236 hypothetical protein; 87.8 1.2 2.6E-05 41.6 6.0 42 110-153 112-153 (386)
213 PRK13512 coenzyme A disulfide 87.8 1.6 3.5E-05 41.7 6.8 50 97-152 190-239 (438)
214 PRK14727 putative mercuric red 87.6 1.5 3.4E-05 42.3 6.7 54 97-153 229-282 (479)
215 TIGR03219 salicylate_mono sali 87.6 1.3 2.9E-05 41.8 6.2 54 98-155 107-160 (414)
216 PLN02546 glutathione reductase 87.5 2.1 4.5E-05 42.3 7.5 56 97-153 294-349 (558)
217 PRK14694 putative mercuric red 87.3 2.1 4.6E-05 41.3 7.4 54 97-153 219-272 (468)
218 TIGR01810 betA choline dehydro 87.2 0.92 2E-05 44.5 4.9 49 108-157 206-258 (532)
219 PLN02985 squalene monooxygenas 87.2 31 0.00068 33.7 16.7 61 97-159 148-214 (514)
220 TIGR01438 TGR thioredoxin and 87.0 2.1 4.7E-05 41.4 7.3 54 97-152 221-277 (484)
221 PRK06069 sdhA succinate dehydr 87.0 1.9 4E-05 42.9 7.0 57 96-153 137-199 (577)
222 PRK07846 mycothione reductase; 86.3 2.6 5.6E-05 40.5 7.3 44 108-153 218-261 (451)
223 PRK07803 sdhA succinate dehydr 86.2 2.4 5.1E-05 42.6 7.2 56 96-152 138-211 (626)
224 PRK05868 hypothetical protein; 86.0 2.8 6.1E-05 39.0 7.3 49 109-159 117-166 (372)
225 PRK08641 sdhA succinate dehydr 85.9 2.3 5E-05 42.3 7.0 59 96-154 133-200 (589)
226 PRK05192 tRNA uridine 5-carbox 85.9 2.6 5.6E-05 41.8 7.1 54 98-153 102-156 (618)
227 TIGR02462 pyranose_ox pyranose 85.8 2 4.3E-05 42.1 6.3 50 109-158 227-283 (544)
228 TIGR02374 nitri_red_nirB nitri 85.6 1.3 2.7E-05 45.8 5.1 47 103-153 61-107 (785)
229 PRK13748 putative mercuric red 85.5 2.8 6E-05 41.4 7.3 53 97-152 311-363 (561)
230 PRK06912 acoL dihydrolipoamide 85.3 3.4 7.3E-05 39.7 7.6 53 97-152 212-266 (458)
231 PLN02815 L-aspartate oxidase 85.1 2.3 4.9E-05 42.4 6.4 57 96-152 155-220 (594)
232 TIGR03452 mycothione_red mycot 84.8 3.8 8.1E-05 39.3 7.7 44 108-153 221-264 (452)
233 PRK06753 hypothetical protein; 84.6 2.5 5.3E-05 39.3 6.2 48 110-159 110-158 (373)
234 PRK09754 phenylpropionate diox 84.5 2.7 5.8E-05 39.5 6.4 44 106-153 68-111 (396)
235 PRK09077 L-aspartate oxidase; 84.3 3.9 8.4E-05 40.2 7.7 58 96-153 138-206 (536)
236 TIGR03169 Nterm_to_SelD pyridi 84.2 1.5 3.2E-05 40.6 4.5 52 98-154 56-107 (364)
237 TIGR01176 fum_red_Fp fumarate 84.1 4.9 0.00011 39.9 8.3 56 96-152 132-193 (580)
238 TIGR02061 aprA adenosine phosp 83.9 4.3 9.2E-05 40.6 7.8 57 97-153 127-190 (614)
239 PRK09231 fumarate reductase fl 83.7 3.9 8.5E-05 40.6 7.4 56 96-152 133-194 (582)
240 KOG2404 Fumarate reductase, fl 83.1 2.2 4.8E-05 38.3 4.7 58 97-155 140-207 (477)
241 PRK12831 putative oxidoreducta 82.7 4.3 9.3E-05 39.1 7.1 38 298-337 424-461 (464)
242 TIGR01318 gltD_gamma_fam gluta 82.7 5 0.00011 38.7 7.6 33 103-135 327-359 (467)
243 PF12831 FAD_oxidored: FAD dep 82.6 0.4 8.7E-06 45.6 0.0 53 105-158 99-154 (428)
244 PRK12769 putative oxidoreducta 82.5 4.7 0.0001 40.7 7.6 39 297-337 614-652 (654)
245 PRK06475 salicylate hydroxylas 82.2 4.8 0.0001 37.8 7.2 61 97-159 108-173 (400)
246 COG0492 TrxB Thioredoxin reduc 82.1 4.4 9.6E-05 36.6 6.5 57 95-155 60-116 (305)
247 PRK12810 gltD glutamate syntha 82.0 4.5 9.7E-05 39.0 7.0 48 103-151 336-397 (471)
248 COG1635 THI4 Ribulose 1,5-bisp 81.4 7.1 0.00015 33.3 6.9 56 97-152 110-176 (262)
249 TIGR03140 AhpF alkyl hydropero 81.1 5.1 0.00011 39.2 7.1 50 102-152 393-448 (515)
250 COG0446 HcaD Uncharacterized N 80.8 5.4 0.00012 37.2 7.0 55 97-152 179-235 (415)
251 COG1251 NirB NAD(P)H-nitrite r 80.0 2.1 4.5E-05 42.8 3.8 50 101-152 192-241 (793)
252 PRK14989 nitrite reductase sub 79.9 4.4 9.4E-05 42.2 6.4 47 103-153 66-112 (847)
253 COG0445 GidA Flavin-dependent 79.8 2 4.3E-05 41.4 3.5 45 114-158 118-162 (621)
254 PRK11749 dihydropyrimidine deh 79.5 7.2 0.00016 37.4 7.4 25 102-126 317-341 (457)
255 PF13434 K_oxygenase: L-lysine 78.9 3.1 6.8E-05 38.2 4.5 42 110-152 293-339 (341)
256 PF01946 Thi4: Thi4 family; PD 78.7 9.5 0.0002 32.5 6.9 56 97-152 97-163 (230)
257 TIGR01372 soxA sarcosine oxida 78.6 14 0.00029 39.5 9.7 54 97-152 352-409 (985)
258 TIGR01292 TRX_reduct thioredox 78.6 8.4 0.00018 34.2 7.2 53 98-152 178-236 (300)
259 PRK04965 NADH:flavorubredoxin 78.5 6.6 0.00014 36.6 6.7 44 105-153 67-110 (377)
260 PLN02661 Putative thiazole syn 78.5 9.9 0.00021 35.0 7.5 54 97-151 173-241 (357)
261 COG3075 GlpB Anaerobic glycero 78.1 4.1 8.8E-05 36.8 4.7 56 97-153 259-316 (421)
262 PRK02106 choline dehydrogenase 77.5 4.1 8.9E-05 40.3 5.3 50 108-158 213-266 (560)
263 COG1251 NirB NAD(P)H-nitrite r 77.5 3.9 8.5E-05 40.9 4.9 54 98-155 61-114 (793)
264 TIGR02360 pbenz_hydroxyl 4-hyd 77.4 8.5 0.00018 36.1 7.1 63 97-160 104-170 (390)
265 PRK12769 putative oxidoreducta 77.1 3.3 7.1E-05 41.8 4.5 42 103-155 384-425 (654)
266 COG0562 Glf UDP-galactopyranos 77.0 1.3 2.9E-05 39.7 1.4 110 28-157 129-244 (374)
267 PRK09564 coenzyme A disulfide 76.9 4.1 8.8E-05 38.9 4.9 49 103-153 63-114 (444)
268 PRK12831 putative oxidoreducta 76.6 3.6 7.8E-05 39.6 4.4 46 98-153 193-239 (464)
269 PF00743 FMO-like: Flavin-bind 76.0 5.4 0.00012 39.1 5.5 60 97-157 85-153 (531)
270 PRK06292 dihydrolipoamide dehy 75.8 10 0.00023 36.3 7.4 53 98-152 212-266 (460)
271 TIGR01316 gltA glutamate synth 75.4 3.9 8.5E-05 39.2 4.3 39 296-336 411-449 (449)
272 PRK12810 gltD glutamate syntha 75.2 4.7 0.0001 38.9 4.8 40 296-337 426-465 (471)
273 COG2072 TrkA Predicted flavopr 74.4 11 0.00025 35.9 7.2 60 98-157 84-147 (443)
274 PF07992 Pyr_redox_2: Pyridine 74.1 5.6 0.00012 32.9 4.6 51 101-152 63-120 (201)
275 TIGR01318 gltD_gamma_fam gluta 73.7 5.5 0.00012 38.4 4.9 40 296-337 427-466 (467)
276 KOG0404 Thioredoxin reductase 72.9 6.3 0.00014 33.6 4.3 70 88-161 62-131 (322)
277 PRK07538 hypothetical protein; 72.8 9.6 0.00021 36.0 6.3 61 97-159 103-171 (413)
278 PRK06467 dihydrolipoamide dehy 71.7 13 0.00028 35.9 6.9 53 97-152 216-272 (471)
279 KOG1298 Squalene monooxygenase 71.6 46 0.001 31.1 9.7 61 96-158 147-213 (509)
280 PRK12778 putative bifunctional 71.4 11 0.00024 38.7 6.8 31 105-135 617-647 (752)
281 KOG1336 Monodehydroascorbate/f 71.1 7.1 0.00015 37.0 4.7 48 101-152 132-179 (478)
282 PTZ00153 lipoamide dehydrogena 71.0 15 0.00033 37.0 7.4 56 98-153 355-426 (659)
283 TIGR03385 CoA_CoA_reduc CoA-di 70.8 12 0.00026 35.5 6.5 45 106-152 54-101 (427)
284 PF03275 GLF: UDP-galactopyran 70.6 0.15 3.3E-06 42.6 -5.6 89 50-157 2-96 (204)
285 PRK15317 alkyl hydroperoxide r 70.6 15 0.00032 36.0 7.1 51 101-152 391-447 (517)
286 COG2509 Uncharacterized FAD-de 70.5 4.3 9.4E-05 38.3 3.2 40 296-337 445-484 (486)
287 PRK12809 putative oxidoreducta 70.3 13 0.00029 37.4 6.9 38 298-337 598-635 (639)
288 PRK12809 putative oxidoreducta 69.8 6 0.00013 39.8 4.3 45 102-157 366-410 (639)
289 PRK13984 putative oxidoreducta 69.1 6.3 0.00014 39.4 4.3 39 296-337 564-602 (604)
290 PRK04176 ribulose-1,5-biphosph 68.7 6.1 0.00013 34.7 3.7 39 300-338 213-256 (257)
291 PRK12779 putative bifunctional 68.6 6.3 0.00014 41.5 4.3 41 296-338 588-628 (944)
292 PRK11749 dihydropyrimidine deh 68.6 7.1 0.00015 37.5 4.4 40 296-337 413-452 (457)
293 PRK12770 putative glutamate sy 67.5 17 0.00037 33.4 6.6 51 100-152 214-284 (352)
294 TIGR01317 GOGAT_sm_gam glutama 67.5 7.7 0.00017 37.6 4.4 40 296-337 440-479 (485)
295 PRK12775 putative trifunctiona 66.5 8.7 0.00019 40.9 4.8 41 296-338 716-756 (1006)
296 KOG0405 Pyridine nucleotide-di 66.4 13 0.00028 34.0 5.2 62 96-158 230-292 (478)
297 COG0029 NadB Aspartate oxidase 66.1 16 0.00034 35.0 5.9 64 89-152 126-194 (518)
298 PLN02927 antheraxanthin epoxid 66.0 15 0.00032 37.1 6.1 41 112-154 208-248 (668)
299 TIGR00292 thiazole biosynthesi 65.8 7.1 0.00015 34.2 3.5 38 300-337 212-254 (254)
300 PF01134 GIDA: Glucose inhibit 65.8 19 0.00041 33.8 6.3 39 295-336 349-388 (392)
301 PRK12770 putative glutamate sy 65.3 10 0.00022 34.9 4.7 38 297-336 312-349 (352)
302 PF13434 K_oxygenase: L-lysine 65.0 10 0.00022 34.9 4.5 45 108-152 107-157 (341)
303 PRK12775 putative trifunctiona 64.2 19 0.00041 38.4 6.8 48 105-152 618-684 (1006)
304 TIGR03862 flavo_PP4765 unchara 64.2 8.2 0.00018 36.0 3.7 38 299-336 335-375 (376)
305 PRK13512 coenzyme A disulfide 64.1 17 0.00037 34.6 6.0 45 107-153 69-116 (438)
306 PRK12771 putative glutamate sy 63.8 9.3 0.0002 37.8 4.3 41 296-338 405-445 (564)
307 PRK12778 putative bifunctional 63.8 9.8 0.00021 39.2 4.6 40 296-337 711-750 (752)
308 PRK08274 tricarballylate dehyd 63.7 7.5 0.00016 37.4 3.6 43 297-339 415-464 (466)
309 COG1635 THI4 Ribulose 1,5-bisp 62.8 7 0.00015 33.3 2.7 39 300-338 218-261 (262)
310 PRK05335 tRNA (uracil-5-)-meth 62.1 28 0.0006 33.1 6.7 35 299-336 329-363 (436)
311 PRK12814 putative NADPH-depend 61.8 11 0.00024 38.0 4.5 40 296-337 462-501 (652)
312 PTZ00318 NADH dehydrogenase-li 61.8 17 0.00038 34.4 5.6 40 298-337 306-348 (424)
313 PRK10262 thioredoxin reductase 60.7 7.4 0.00016 35.3 2.8 42 296-338 275-316 (321)
314 PRK13800 putative oxidoreducta 60.2 30 0.00065 36.5 7.4 56 96-152 139-203 (897)
315 PRK13984 putative oxidoreducta 60.0 24 0.00053 35.2 6.5 45 108-153 474-537 (604)
316 PRK12771 putative glutamate sy 59.8 33 0.0007 34.0 7.3 47 106-153 315-379 (564)
317 PRK06116 glutathione reductase 59.2 15 0.00033 35.1 4.7 38 295-334 290-327 (450)
318 TIGR01421 gluta_reduc_1 glutat 59.0 16 0.00034 35.1 4.8 37 296-334 291-327 (450)
319 TIGR01789 lycopene_cycl lycope 58.5 19 0.0004 33.6 5.1 47 98-153 91-137 (370)
320 PRK09853 putative selenate red 57.8 15 0.00032 38.9 4.6 40 296-337 803-842 (1019)
321 TIGR00136 gidA glucose-inhibit 57.5 32 0.0007 34.3 6.6 38 295-335 351-389 (617)
322 PLN02785 Protein HOTHEAD 56.6 25 0.00054 35.0 5.8 38 299-336 541-580 (587)
323 PTZ00367 squalene epoxidase; P 56.6 2.1E+02 0.0046 28.4 16.8 34 300-333 336-372 (567)
324 PRK12835 3-ketosteroid-delta-1 56.0 13 0.00028 37.1 3.7 46 296-341 523-575 (584)
325 TIGR03143 AhpF_homolog putativ 56.0 33 0.00071 34.0 6.5 53 97-153 61-113 (555)
326 TIGR01424 gluta_reduc_2 glutat 55.7 18 0.00039 34.6 4.6 38 295-334 288-325 (446)
327 TIGR01816 sdhA_forward succina 55.3 16 0.00035 36.2 4.3 39 298-336 351-396 (565)
328 TIGR03315 Se_ygfK putative sel 55.2 14 0.00031 39.1 3.9 39 296-336 801-839 (1012)
329 COG1206 Gid NAD(FAD)-utilizing 55.1 15 0.00033 33.4 3.5 70 251-331 293-362 (439)
330 PRK09078 sdhA succinate dehydr 54.6 18 0.00038 36.2 4.4 40 297-336 382-428 (598)
331 PLN02661 Putative thiazole syn 54.3 15 0.00032 33.9 3.5 39 300-338 286-329 (357)
332 PLN00128 Succinate dehydrogena 53.0 20 0.00043 36.1 4.5 39 298-336 421-466 (635)
333 PRK12842 putative succinate de 52.9 18 0.00038 36.0 4.1 40 296-335 520-566 (574)
334 TIGR01423 trypano_reduc trypan 52.6 22 0.00048 34.5 4.6 38 295-334 313-350 (486)
335 PLN02507 glutathione reductase 52.0 22 0.00047 34.7 4.5 38 295-334 325-362 (499)
336 TIGR03143 AhpF_homolog putativ 51.7 21 0.00046 35.3 4.5 42 296-338 269-310 (555)
337 PRK07845 flavoprotein disulfid 51.7 39 0.00086 32.5 6.2 38 295-334 299-336 (466)
338 TIGR01372 soxA sarcosine oxida 51.6 19 0.00042 38.3 4.4 38 298-338 436-473 (985)
339 KOG2415 Electron transfer flav 50.2 20 0.00043 33.7 3.6 55 97-151 184-253 (621)
340 PRK06452 sdhA succinate dehydr 49.2 26 0.00056 34.8 4.6 41 296-336 355-403 (566)
341 PRK08205 sdhA succinate dehydr 49.2 25 0.00053 35.1 4.5 40 297-336 372-418 (583)
342 PRK06134 putative FAD-binding 48.8 17 0.00038 36.1 3.4 44 296-339 524-574 (581)
343 PRK07843 3-ketosteroid-delta-1 48.6 20 0.00044 35.4 3.8 40 295-334 509-555 (557)
344 PRK05976 dihydrolipoamide dehy 48.2 49 0.0011 31.9 6.3 37 296-334 306-342 (472)
345 COG1249 Lpd Pyruvate/2-oxoglut 48.0 26 0.00056 33.6 4.2 37 296-334 298-334 (454)
346 COG2081 Predicted flavoprotein 47.9 18 0.00039 33.7 3.0 39 298-336 366-407 (408)
347 PRK14727 putative mercuric red 47.8 23 0.00051 34.2 4.0 38 295-334 308-345 (479)
348 TIGR02485 CobZ_N-term precorri 47.7 23 0.00051 33.6 4.0 41 295-335 382-429 (432)
349 PRK12845 3-ketosteroid-delta-1 47.6 22 0.00047 35.3 3.8 38 296-333 518-562 (564)
350 TIGR01812 sdhA_frdA_Gneg succi 47.3 24 0.00052 34.9 4.1 39 298-336 357-402 (566)
351 PRK06292 dihydrolipoamide dehy 47.0 27 0.00058 33.5 4.3 38 295-334 293-330 (460)
352 PRK07121 hypothetical protein; 47.0 21 0.00047 34.6 3.6 40 296-335 445-490 (492)
353 PRK06370 mercuric reductase; V 46.4 31 0.00067 33.1 4.6 38 295-334 296-333 (463)
354 PTZ00139 Succinate dehydrogena 46.2 26 0.00057 35.1 4.2 40 297-336 399-445 (617)
355 PRK12844 3-ketosteroid-delta-1 46.2 25 0.00055 34.8 4.0 40 296-335 503-549 (557)
356 PRK06327 dihydrolipoamide dehy 46.2 62 0.0013 31.2 6.6 37 296-334 310-346 (475)
357 PRK06263 sdhA succinate dehydr 46.1 29 0.00064 34.2 4.5 41 296-336 357-403 (543)
358 COG3486 IucD Lysine/ornithine 45.8 35 0.00075 32.0 4.5 44 109-153 291-339 (436)
359 PRK05249 soluble pyridine nucl 45.8 28 0.00062 33.3 4.3 38 295-334 297-334 (461)
360 PRK13748 putative mercuric red 45.5 27 0.00059 34.4 4.2 38 295-334 390-427 (561)
361 PRK14694 putative mercuric red 45.4 29 0.00063 33.4 4.2 38 295-334 297-334 (468)
362 PLN02852 ferredoxin-NADP+ redu 45.3 26 0.00057 34.0 3.8 41 297-338 383-423 (491)
363 PRK07818 dihydrolipoamide dehy 45.1 31 0.00067 33.2 4.4 38 295-334 298-335 (466)
364 PRK12834 putative FAD-binding 45.1 24 0.00051 34.9 3.6 39 296-334 500-548 (549)
365 PRK08641 sdhA succinate dehydr 45.0 30 0.00066 34.5 4.4 40 296-335 364-409 (589)
366 PRK12839 hypothetical protein; 44.4 24 0.00053 35.0 3.6 42 296-337 521-569 (572)
367 PRK09077 L-aspartate oxidase; 44.4 29 0.00064 34.1 4.2 41 296-336 362-409 (536)
368 PRK06069 sdhA succinate dehydr 44.3 26 0.00056 34.8 3.8 39 298-336 369-414 (577)
369 PRK05945 sdhA succinate dehydr 44.2 33 0.00071 34.1 4.5 40 297-336 367-413 (575)
370 COG0492 TrxB Thioredoxin reduc 43.5 31 0.00068 31.1 3.9 43 295-338 260-302 (305)
371 TIGR00137 gid_trmFO tRNA:m(5)U 43.4 53 0.0011 31.3 5.5 34 299-335 328-361 (433)
372 PRK06467 dihydrolipoamide dehy 43.0 31 0.00066 33.3 4.0 37 296-334 300-336 (471)
373 PRK08958 sdhA succinate dehydr 42.6 35 0.00075 34.1 4.4 39 298-336 378-423 (588)
374 TIGR02053 MerA mercuric reduct 41.9 37 0.0008 32.6 4.4 38 295-334 291-328 (463)
375 PRK12779 putative bifunctional 41.8 88 0.0019 33.2 7.3 46 107-152 495-560 (944)
376 TIGR01317 GOGAT_sm_gam glutama 41.7 76 0.0016 30.8 6.5 44 109-152 349-412 (485)
377 COG3573 Predicted oxidoreducta 41.5 84 0.0018 28.8 6.0 55 96-151 149-225 (552)
378 PF03486 HI0933_like: HI0933-l 41.5 22 0.00048 33.6 2.7 32 299-330 374-408 (409)
379 PLN02546 glutathione reductase 41.1 36 0.00079 33.7 4.2 38 295-334 375-412 (558)
380 TIGR00551 nadB L-aspartate oxi 41.0 35 0.00075 33.1 4.0 41 295-335 341-388 (488)
381 PRK06481 fumarate reductase fl 41.0 31 0.00068 33.6 3.7 40 296-335 457-502 (506)
382 PRK05675 sdhA succinate dehydr 40.9 40 0.00088 33.4 4.5 39 298-336 360-405 (570)
383 PRK09231 fumarate reductase fl 40.8 39 0.00084 33.7 4.4 41 296-336 367-414 (582)
384 PRK12837 3-ketosteroid-delta-1 40.6 24 0.00052 34.5 2.9 39 296-334 465-510 (513)
385 PRK12843 putative FAD-binding 40.6 35 0.00075 34.0 4.0 40 296-335 525-571 (578)
386 COG2303 BetA Choline dehydroge 40.4 39 0.00085 33.3 4.3 51 107-158 214-270 (542)
387 TIGR01176 fum_red_Fp fumarate 40.4 40 0.00086 33.6 4.4 42 295-336 365-413 (580)
388 KOG1346 Programmed cell death 40.1 42 0.0009 31.6 4.0 40 109-152 270-309 (659)
389 TIGR03452 mycothione_red mycot 40.0 40 0.00086 32.3 4.2 38 295-334 290-327 (452)
390 PRK06115 dihydrolipoamide dehy 39.9 38 0.00082 32.6 4.1 38 295-334 300-337 (466)
391 PRK06416 dihydrolipoamide dehy 39.4 41 0.00088 32.3 4.2 38 295-334 296-333 (462)
392 COG1252 Ndh NADH dehydrogenase 39.0 63 0.0014 30.5 5.2 43 295-337 285-332 (405)
393 PRK07846 mycothione reductase; 38.9 46 0.001 31.9 4.5 38 295-334 287-324 (451)
394 PRK07803 sdhA succinate dehydr 38.3 39 0.00085 34.0 4.0 39 297-335 402-446 (626)
395 PRK08071 L-aspartate oxidase; 38.2 42 0.00091 32.8 4.1 40 296-335 341-387 (510)
396 PRK08275 putative oxidoreducta 37.7 40 0.00086 33.3 3.9 41 295-336 364-404 (554)
397 TIGR01350 lipoamide_DH dihydro 37.6 46 0.00099 31.9 4.3 38 296-335 295-332 (461)
398 TIGR01438 TGR thioredoxin and 37.3 55 0.0012 31.7 4.8 39 295-334 305-343 (484)
399 PRK07512 L-aspartate oxidase; 37.1 46 0.001 32.5 4.2 41 296-336 350-397 (513)
400 COG3634 AhpF Alkyl hydroperoxi 37.0 51 0.0011 30.4 4.0 66 96-161 266-332 (520)
401 PRK05192 tRNA uridine 5-carbox 37.0 84 0.0018 31.5 5.9 67 249-330 317-386 (618)
402 PRK07057 sdhA succinate dehydr 36.8 41 0.00089 33.6 3.9 38 298-335 381-425 (591)
403 PRK06175 L-aspartate oxidase; 36.5 44 0.00096 31.9 3.9 40 296-335 340-386 (433)
404 KOG4716 Thioredoxin reductase 36.0 60 0.0013 29.8 4.3 67 89-156 231-302 (503)
405 COG3486 IucD Lysine/ornithine 35.6 86 0.0019 29.5 5.3 43 110-152 111-155 (436)
406 PF08491 SE: Squalene epoxidas 34.3 3.4E+02 0.0073 24.2 9.4 85 240-335 80-167 (276)
407 PRK06912 acoL dihydrolipoamide 33.9 53 0.0011 31.5 4.0 37 296-334 293-329 (458)
408 PLN02815 L-aspartate oxidase 32.7 65 0.0014 32.2 4.5 41 295-335 385-432 (594)
409 PRK05329 anaerobic glycerol-3- 32.4 59 0.0013 30.9 4.0 39 298-336 378-420 (422)
410 COG0445 GidA Flavin-dependent 32.2 83 0.0018 30.9 4.8 67 249-329 317-385 (621)
411 PRK09853 putative selenate red 31.6 1.5E+02 0.0033 31.7 7.0 44 108-153 719-778 (1019)
412 PRK06854 adenylylsulfate reduc 31.5 79 0.0017 31.7 4.9 43 294-336 389-431 (608)
413 PTZ00052 thioredoxin reductase 31.2 71 0.0015 31.1 4.4 37 297-334 304-340 (499)
414 KOG1399 Flavin-containing mono 30.9 1.4E+02 0.003 28.7 6.2 59 98-157 92-156 (448)
415 PRK08401 L-aspartate oxidase; 30.5 68 0.0015 30.9 4.2 40 296-335 319-365 (466)
416 TIGR01811 sdhA_Bsu succinate d 30.4 65 0.0014 32.3 4.1 40 296-335 379-424 (603)
417 PRK08010 pyridine nucleotide-d 29.3 78 0.0017 30.1 4.4 38 295-334 279-316 (441)
418 TIGR00275 flavoprotein, HI0933 29.0 36 0.00078 32.0 2.0 31 299-329 366-399 (400)
419 PTZ00058 glutathione reductase 27.3 95 0.002 30.8 4.6 40 295-334 360-431 (561)
420 PRK13800 putative oxidoreducta 27.3 69 0.0015 33.8 3.8 41 295-336 369-409 (897)
421 PF15612 WHIM1: WSTF, HB1, Itc 27.2 76 0.0016 19.6 2.6 30 2-40 17-46 (50)
422 PRK12814 putative NADPH-depend 26.5 2E+02 0.0044 29.1 6.9 44 108-152 373-435 (652)
423 COG1053 SdhA Succinate dehydro 26.2 81 0.0018 31.3 3.9 59 96-154 138-202 (562)
424 KOG2311 NAD/FAD-utilizing prot 26.1 76 0.0016 30.6 3.4 48 110-158 139-190 (679)
425 PRK06444 prephenate dehydrogen 25.7 89 0.0019 26.2 3.5 40 96-160 10-49 (197)
426 PRK07573 sdhA succinate dehydr 25.7 95 0.0021 31.4 4.3 36 296-331 415-456 (640)
427 KOG2852 Possible oxidoreductas 25.5 1.6E+02 0.0035 26.5 5.1 59 96-156 147-210 (380)
428 PRK08626 fumarate reductase fl 25.4 1.1E+02 0.0023 31.1 4.7 40 297-336 382-429 (657)
429 PTZ00306 NADH-dependent fumara 25.2 88 0.0019 34.2 4.2 41 297-337 857-903 (1167)
430 PF03197 FRD2: Bacteriophage F 24.7 2.6E+02 0.0056 20.4 5.1 38 102-143 2-40 (102)
431 TIGR00031 UDP-GALP_mutase UDP- 24.0 70 0.0015 29.9 2.8 33 300-333 344-376 (377)
432 PRK15458 tagatose 6-phosphate 23.9 79 0.0017 29.8 3.1 36 299-336 81-116 (426)
433 KOG2665 Predicted FAD-dependen 23.8 1.4E+02 0.003 27.3 4.4 57 96-152 196-255 (453)
434 COG0029 NadB Aspartate oxidase 23.5 78 0.0017 30.6 3.0 42 295-336 349-397 (518)
435 PRK15052 D-tagatose-1,6-bispho 23.5 83 0.0018 29.6 3.1 36 299-336 78-113 (421)
436 PF08013 Tagatose_6_P_K: Tagat 23.3 82 0.0018 29.7 3.0 34 301-336 83-116 (424)
437 KOG0278 Serine/threonine kinas 22.7 1E+02 0.0022 26.9 3.3 27 112-140 180-206 (334)
438 KOG2853 Possible oxidoreductas 22.7 6.3E+02 0.014 23.5 11.5 80 240-334 401-481 (509)
439 PRK07804 L-aspartate oxidase; 22.3 1.1E+02 0.0025 30.1 4.1 41 295-335 365-412 (541)
440 TIGR02810 agaZ_gatZ D-tagatose 21.9 95 0.0021 29.2 3.2 36 299-336 77-112 (420)
441 TIGR02061 aprA adenosine phosp 21.5 1.2E+02 0.0026 30.5 4.0 41 295-335 401-441 (614)
442 PF09828 Chrome_Resist: Chroma 21.3 1.5E+02 0.0033 23.1 3.7 30 25-54 55-85 (135)
443 KOG3851 Sulfide:quinone oxidor 21.2 44 0.00095 30.4 0.9 39 117-159 112-150 (446)
444 KOG2960 Protein involved in th 20.8 1E+02 0.0022 26.3 2.8 43 299-341 275-322 (328)
445 PF13619 KTSC: KTSC domain 20.6 1.7E+02 0.0038 18.9 3.5 42 116-161 3-44 (60)
446 COG0446 HcaD Uncharacterized N 20.5 1.7E+02 0.0037 27.0 4.8 43 108-155 65-107 (415)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=8.8e-44 Score=344.84 Aligned_cols=352 Identities=88% Similarity=1.395 Sum_probs=289.4
Q ss_pred CCChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhh
Q 018523 1 MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ 80 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~ 80 (354)
+|||.+|++++..+++......+.+.++|++|+.||+++.++++.+.+.++++++.++++.+|+++|+..++..+..++.
T Consensus 213 ~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~ 292 (567)
T PLN02612 213 MLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQ 292 (567)
T ss_pred cCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHh
Confidence 36899999987665544333334456789999999999999999999999999998888899999999999988877766
Q ss_pred ccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCC
Q 018523 81 EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 160 (354)
Q Consensus 81 ~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~ 160 (354)
.+.+..+.+++|+..++|.++|++.|++.|++|++|++|++|..++++++++|.+.+|+++++|+||+|+|+..+..|++
T Consensus 293 ~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~ 372 (567)
T PLN02612 293 EKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLP 372 (567)
T ss_pred ccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCc
Confidence 55666778888885468999999999999999999999999998767766668888898899999999999999999988
Q ss_pred cchhhhHHHHHhhccCCccEEEEEEEeccccccccCceeeccCcccchhcccccccccccCCCCcEEEEEecCCCCCCCC
Q 018523 161 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISC 240 (354)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~~~~~~~~ 240 (354)
....+.++.+.++++.+.++++++++|++++|....++++.+.+..+++.++|..++++++++.+++.+++.++.+|.++
T Consensus 373 ~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~ 452 (567)
T PLN02612 373 DQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISR 452 (567)
T ss_pred chhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcC
Confidence 65444456677777888899999999999987545556666655555555666656666677777777766677889999
Q ss_pred ChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCCCCCchhH
Q 018523 241 SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEG 320 (354)
Q Consensus 241 ~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~g 320 (354)
+++++++.++++|+++||....++.....++.+.+.+.|.+.|...|+....+|..++|++||||||||+.++||++|+|
T Consensus 453 sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeG 532 (567)
T PLN02612 453 SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEG 532 (567)
T ss_pred CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHHH
Confidence 99999999999999999976321112345677788889999888788876678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhccccccccCC
Q 018523 321 AVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 352 (354)
Q Consensus 321 Ai~sG~~aa~~il~~~~~~~~~~~~~~~~~~~ 352 (354)
|+.||++||++|+++++...+.+..++++++.
T Consensus 533 Av~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 533 AVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999999999888899888887763
No 2
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.6e-38 Score=304.72 Aligned_cols=338 Identities=31% Similarity=0.558 Sum_probs=260.8
Q ss_pred CCChHHHHHHhhhh--hHHHh---cc---ccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHH
Q 018523 1 MLTWPEKVKFAIGL--LPAII---GG---QAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCIL 72 (354)
Q Consensus 1 ~ls~~~k~~~~~~~--~~~~~---~~---~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 72 (354)
.||+.+|++++..+ .+.+. ++ .+.|+.++++|+.+|+++++.+++.++++++|++.+.++.+++++|+.+++
T Consensus 192 ~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~ 271 (569)
T PLN02487 192 QLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCML 271 (569)
T ss_pred CCCHHHHHhhcccccccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 47899999996543 11111 11 234667889999999999966676899999999998888999999999999
Q ss_pred HHHHHHhhccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecC--CC--CEEEEEE---cCCeEEEcCE
Q 018523 73 IALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDA 145 (354)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~g--~v~~V~~---~~g~~~~ad~ 145 (354)
..+..+.....+..+.|++||+.+.|++++++.|++.|++|+++++|++|..+. +| ++++|++ .+++++.+|+
T Consensus 272 ~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~ 351 (569)
T PLN02487 272 TIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADA 351 (569)
T ss_pred HHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCE
Confidence 888654323444568899999844699999999999999999999999999863 33 3677887 3345789999
Q ss_pred EEEccChhhHhhhCCcchhhhHHHHHhhccCCccEEEEEEEeccccccc--------------cCceeeccCcccchhcc
Q 018523 146 YVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT--------------YDHLLFSRSSLLSVYAD 211 (354)
Q Consensus 146 VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 211 (354)
||+|+|++.+++|+|+.....+..+.+..+.+.+++.++|+|++++... .+++++..+....++.+
T Consensus 352 VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~d 431 (569)
T PLN02487 352 YVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFAD 431 (569)
T ss_pred EEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEee
Confidence 9999999999999998543334577788888899999999999875421 11111111111122223
Q ss_pred ccccccc-c-cCCCCcEEEEEecCCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCC
Q 018523 212 MSLTCKE-Y-YNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNC 289 (354)
Q Consensus 212 ~s~~~~~-~-~~~g~~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 289 (354)
.....++ + .+..++++.+++++++.+..++++++++.+.++|.+++|... ..++.+.++++.+++.|...||+
T Consensus 432 i~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~-----~~~v~~~~vv~~~~at~~~~pg~ 506 (569)
T PLN02487 432 LALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSR-----GLEVTWSSVVKIGQSLYREAPGM 506 (569)
T ss_pred eecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccc-----cCceEEEEEEEccCceeccCCCc
Confidence 2111122 2 122346778887777788899999999999999999999864 23577778999999999999998
Q ss_pred CCCCCCCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhHHHhc
Q 018523 290 EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARG 343 (354)
Q Consensus 290 ~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~~~~~~ 343 (354)
...||..++|++|||+||||+.++||.+||||++||.+||+.|++..+.+.+--
T Consensus 507 ~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~ 560 (569)
T PLN02487 507 DPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLR 560 (569)
T ss_pred cccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 778899999999999999999999999999999999999999999886665543
No 3
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=5.3e-38 Score=299.53 Aligned_cols=330 Identities=73% Similarity=1.176 Sum_probs=253.7
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhc
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE 81 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~ 81 (354)
+|+.+|++++..++.......+.+.++|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+.+++..+..++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~ 198 (453)
T TIGR02731 119 LTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQE 198 (453)
T ss_pred CCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67899999876554332222344567899999999999889999899999999999988999999999999888776544
Q ss_pred cCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCe-----EEEcCEEEEccChhhHh
Q 018523 82 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILK 156 (354)
Q Consensus 82 ~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~-----~~~ad~VI~a~p~~~l~ 156 (354)
..+....+.+|+..+.|+++|.+.+++.|++|++|++|++|..++++++++|++.+|+ ++.+|+||+|+|++.+.
T Consensus 199 ~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~ 278 (453)
T TIGR02731 199 RHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFK 278 (453)
T ss_pred CCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHH
Confidence 4444455666653368999999999889999999999999987666767678886665 78999999999999999
Q ss_pred hhCCcchhhhHHHHHhhccCCccEEEEEEEeccccccccCceeeccCcccchhcccccccccccCCCCcEEEEEecCCCC
Q 018523 157 LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEE 236 (354)
Q Consensus 157 ~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~~~~ 236 (354)
++++.......+.+.+.++++.++.++++.++++++. ..++++.+.+......+.+..+.++.+++++++++.+.....
T Consensus 279 ~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~ 357 (453)
T TIGR02731 279 LLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTT-VDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAAD 357 (453)
T ss_pred hhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCC-CCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhh
Confidence 9987642223456667777888999999999998774 234455544433222233332333445556777776655567
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCCCCC
Q 018523 237 WISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLA 316 (354)
Q Consensus 237 ~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~~~~ 316 (354)
|.+++++++++.++++|++++|.... .....+++++.+.++|++.|...||....++..++|++||||||++++.+||+
T Consensus 358 ~~~~~~ee~~~~v~~~L~~~~~~~~~-~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g 436 (453)
T TIGR02731 358 WIGRSDEEIIDATMAELAKLFPNHIK-ADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA 436 (453)
T ss_pred hhcCCHHHHHHHHHHHHHHhCCcccC-CCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence 77899999999999999999985310 00123567778888999887777886556778889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHH
Q 018523 317 SMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 317 ~~~gAi~sG~~aa~~il 333 (354)
+||||++||.+||++|.
T Consensus 437 ~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 437 SMEGAVLSGKLCAQAIV 453 (453)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 99999999999999873
No 4
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.3e-37 Score=296.36 Aligned_cols=328 Identities=33% Similarity=0.618 Sum_probs=248.5
Q ss_pred CCChHHHHHHhhhhh--HHHh---ccc---cccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHH
Q 018523 1 MLTWPEKVKFAIGLL--PAII---GGQ---AYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCIL 72 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~--~~~~---~~~---~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 72 (354)
.|||.+|++++..+. +... +++ +.++.++++|+.+|+++++.++..++++++|++.+.++.+++++|+.+++
T Consensus 116 ~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~ 195 (474)
T TIGR02732 116 QLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCML 195 (474)
T ss_pred CCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 479999999876552 1110 111 33556789999999999977777899999999998888999999999998
Q ss_pred HHHHHHhhccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecC--CC--CEEEEEEcCC---eEEEcCE
Q 018523 73 IALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDA 145 (354)
Q Consensus 73 ~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~g--~v~~V~~~~g---~~~~ad~ 145 (354)
..+..+..++.+....+++|+++..+.+++.+.|++.|++|+++++|++|+.++ ++ ++++|++.+| +++.+|+
T Consensus 196 ~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~ 275 (474)
T TIGR02732 196 TIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADA 275 (474)
T ss_pred HHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCE
Confidence 877755544556677888888755578889999999999999999999999853 23 2666777544 5689999
Q ss_pred EEEccChhhHhhhCCcchhhhHHHHHhhccCCccEEEEEEEecccccccc--------------CceeeccCcccchhcc
Q 018523 146 YVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY--------------DHLLFSRSSLLSVYAD 211 (354)
Q Consensus 146 VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 211 (354)
||+|+|++.+.+|+++..........+.++.+.++.+++++|++++.... +++.+..+....++.+
T Consensus 276 VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (474)
T TIGR02732 276 YVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFAD 355 (474)
T ss_pred EEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeeh
Confidence 99999999999999874322345667888889999999999997654211 1111111111111122
Q ss_pred cccccc-cccCCCC-cEEEEEecCCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCC
Q 018523 212 MSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNC 289 (354)
Q Consensus 212 ~s~~~~-~~~~~g~-~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 289 (354)
.+...+ ++++.+. .++.++.+.+..+.+++++++++.++++|++++|... ..++++..+++.+++.|.+.||.
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~-----~~~~~~~~v~~~~~a~~~~~pg~ 430 (474)
T TIGR02732 356 LALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSK-----NLKLTWSSVVKLAQSLYREAPGM 430 (474)
T ss_pred hhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCcccc-----CCceeEEEEEEecCceeccCCCC
Confidence 221123 2333333 4466665555667789999999999999999999753 23577778999999999999998
Q ss_pred CCCCCCCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 018523 290 EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 290 ~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il 333 (354)
...+|..++|++|||+||||+..+||++||+|++||.+||+.|+
T Consensus 431 ~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 431 DPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 77789999999999999999999999999999999999999874
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.7e-34 Score=271.66 Aligned_cols=314 Identities=27% Similarity=0.409 Sum_probs=231.6
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHH-Hhh
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR-FLQ 80 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~-~~~ 80 (354)
||+.+|.+++..+.... . .....++++|+.+|++++++++++.+.+++|++.++++.+|+++|+.+++..+.. +..
T Consensus 105 l~~~~~~~~~~~~~~~~--~-~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 181 (419)
T TIGR03467 105 LSWADKLALARALLALR--R-TRFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLA 181 (419)
T ss_pred CCHHHHHHHHHHHHHHH--h-cCccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Confidence 67888888876554221 1 1124678999999999987899999999999999999999999999999887754 322
Q ss_pred ccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCC
Q 018523 81 EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 160 (354)
Q Consensus 81 ~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~ 160 (354)
...+..+.|++||+.+.+.++|++.|++.|++|++|++|++|..++++ ++.+...+|+++.||+||+|+|++++..+++
T Consensus 182 ~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~ 260 (419)
T TIGR03467 182 GRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGGETLPADAVVLAVPPRHAASLLP 260 (419)
T ss_pred CCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCCccccCCEEEEcCCHHHHHHhCC
Confidence 223345789998873334466899998899999999999999986554 4212224677899999999999999999987
Q ss_pred cchhhhHHHHHhhccCCccEEEEEEEeccccccccCceeeccCcccchhcccccccccccCCCCcEEEEEecCCCCCCCC
Q 018523 161 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISC 240 (354)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~~~~~~~~ 240 (354)
+. ...+++.+++|.++.++++.|++++|...+...+.+.+...++ +.+. .++...++.+.......+..+
T Consensus 261 ~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~ 330 (419)
T TIGR03467 261 GE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQWLF-DRGQ-----LAGEPGYLAVVISAARDLVDL 330 (419)
T ss_pred Cc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCceeEEE-ECCc-----CCCCCCEEEEEEecchhhccC
Confidence 52 2445677888999999999999998643222222222222121 1111 112224444444444566778
Q ss_pred ChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCCCCCchhH
Q 018523 241 SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEG 320 (354)
Q Consensus 241 ~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~g 320 (354)
+++++++.++++|++++|.... ..+....+.+|+++.|.+.+|....+|...+|.+|||||||++++++|++|||
T Consensus 331 ~~e~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~eg 405 (419)
T TIGR03467 331 PREELADRIVAELRRAFPRVAG-----AKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEG 405 (419)
T ss_pred CHHHHHHHHHHHHHHhcCcccc-----CCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHH
Confidence 9999999999999999996521 23555667788888777777765556767788999999999999988889999
Q ss_pred HHHHHHHHHHHHHH
Q 018523 321 AVLSGKLCAQAIVQ 334 (354)
Q Consensus 321 Ai~sG~~aa~~il~ 334 (354)
|+.||.+||++|++
T Consensus 406 A~~SG~~aA~~i~~ 419 (419)
T TIGR03467 406 AVRSGYQAAEAVLK 419 (419)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999873
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-31 Score=249.82 Aligned_cols=320 Identities=22% Similarity=0.293 Sum_probs=233.1
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhc
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE 81 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~ 81 (354)
+++.+|++++..++.. .......+++++|+.+||+++ ++++.++.++++++..+++.+++++|+.+++..+......
T Consensus 105 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 181 (434)
T PRK07233 105 LSLIDKFRLGLLTLLA--RRIKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNR 181 (434)
T ss_pred CCHHHHHHhHHHHHhh--hhcccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhcc
Confidence 5677888875544322 111234567899999999998 7888899999999999999999999999887766543211
Q ss_pred -c--CCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh
Q 018523 82 -K--HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 82 -~--~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 158 (354)
. ....+.+++||+ +.|+++|++.+++.|++|+++++|++|+.++ +.++.+. .+++++++|+||+|+|++.+..+
T Consensus 182 ~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 1 122477899997 8999999999999999999999999999854 4454343 56778999999999999999998
Q ss_pred CCcchhhhHHHHHhhccCCccEEEEEEEeccccccccCceee-cc--CcccchhcccccccccccCCCCcEEEEE-ecC-
Q 018523 159 LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLF-SR--SSLLSVYADMSLTCKEYYNPNQSMLELV-FAP- 233 (354)
Q Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~s~~~~~~~~~g~~~l~~~-~~~- 233 (354)
+++. +....+.++++.|.+..++++++++++.. ..+.. .+ .+...++ ..+..++...|++++++.+. +.+
T Consensus 259 l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~g~~~~~~~~~~~~ 333 (434)
T PRK07233 259 VPDL--PADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWLNINDPGAPFGGVI-EHTNLVPPERYGGEHLVYLPKYLPG 333 (434)
T ss_pred cCCC--cHHHHhhhcccCccceEEEEEEecCCCCC--CceeeecCCCCCcceEE-EecccCCccccCCceEEEEeeecCC
Confidence 8753 23445567788888999999999987653 12222 12 2232222 22333333334455543322 322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCC
Q 018523 234 AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQK 313 (354)
Q Consensus 234 ~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~ 313 (354)
...+..++++++++.++++|++++|+.. ...++...+.+|+++.+.+.||....++..+++++|||||||++...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~L~~~~p~~~-----~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~ 408 (434)
T PRK07233 334 DHPLWQMSDEELLDRFLSYLRKMFPDFD-----RDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYP 408 (434)
T ss_pred CChhhcCCHHHHHHHHHHHHHHhCCCCC-----hhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCC
Confidence 2223457899999999999999999763 23577888899999887777876555667778899999999965544
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhh
Q 018523 314 YLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 314 ~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
++++|++|+.||.+||++|++.+.
T Consensus 409 ~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 409 EDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ccCchhHHHHHHHHHHHHHhhhhc
Confidence 446999999999999999998764
No 7
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=1.1e-28 Score=236.30 Aligned_cols=290 Identities=19% Similarity=0.259 Sum_probs=213.8
Q ss_pred ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHH-----------hhcc--------------
Q 018523 28 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQEK-------------- 82 (354)
Q Consensus 28 ~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~-----------~~~~-------------- 82 (354)
..++|+.||++++ ++++..+.+++|++.++|+.+++++|+.+++..+... ....
T Consensus 134 ~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 212 (462)
T TIGR00562 134 GKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKK 212 (462)
T ss_pred CCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccc
Confidence 4569999999998 8999999999999999999999999999876443111 0000
Q ss_pred CCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCcc
Q 018523 83 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 162 (354)
Q Consensus 83 ~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~~ 162 (354)
.+..+..+.||+ ++|+++|++.|. .++|+++++|++|.+++++ + .|++.+|++++||+||+|+|++.+..++++.
T Consensus 213 ~~~~~~~~~gG~-~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~ 287 (462)
T TIGR00562 213 QGQDFQTLATGL-ETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSN-Y-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL 287 (462)
T ss_pred cCCceEecchhH-HHHHHHHHHHhc--cCeEEcCCeEEEEEecCCc-E-EEEECCCcEEEcCEEEECCCHHHHHHHhccc
Confidence 111245678887 799999998774 2789999999999986554 4 3777788889999999999999999998763
Q ss_pred hhhhHHHHHhhccCCccEEEEEEEecccccc-ccCce--eeccC---cccchhcccccccccccCCCCcEEEEEec--CC
Q 018523 163 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYDHL--LFSRS---SLLSVYADMSLTCKEYYNPNQSMLELVFA--PA 234 (354)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~--~~~~~---~~~~~~~~~s~~~~~~~~~g~~~l~~~~~--~~ 234 (354)
+....+++.+++|.++.++.+.|+++++. ...++ +.+.. +...++.+. ...+...|++.+++.++.. ..
T Consensus 288 --~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s-~~~p~~~p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 288 --SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTS-KLFPNRAPPGKTLLTAYIGGATD 364 (462)
T ss_pred --CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEc-cccCCcCCCCcEEEEEEeCCCCC
Confidence 33567778899999999999999887653 22222 22222 223333222 2223445556666665443 23
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCC----CCCCCCCCceEEeeccc
Q 018523 235 EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCR----PLQRSPVEGFYLAGDYT 310 (354)
Q Consensus 235 ~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~L~~aG~~~ 310 (354)
..+.+++++++++.+++.|.++++... ++....+++|+++.+.+.+|+.... +....+.+||++||+|.
T Consensus 365 ~~~~~~~~ee~~~~v~~~L~~~~gi~~-------~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~ 437 (462)
T TIGR00562 365 ESIVDLSENEIINIVLRDLKKVLNINN-------EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSF 437 (462)
T ss_pred ccccCCCHHHHHHHHHHHHHHHhCCCC-------CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEecccc
Confidence 456678999999999999999997432 3677789999999988888853211 12234457999999998
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 311 KQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 311 ~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+ .+|++|+.||.++|++|++.+
T Consensus 438 ~g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 438 EG---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CC---CcHHHHHHHHHHHHHHHHHhh
Confidence 75 599999999999999998875
No 8
>PLN02576 protoporphyrinogen oxidase
Probab=99.97 E-value=2.6e-28 Score=235.54 Aligned_cols=316 Identities=18% Similarity=0.244 Sum_probs=218.1
Q ss_pred CCChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHH--
Q 018523 1 MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-- 78 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~-- 78 (354)
+||+.+|++++...+.. .+.....+++|+.+|++++ ++++.++.+++|++.++|+.+++++|+...+..+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~ 194 (496)
T PLN02576 120 LLSAPGKIRAGLGAFGW----KRPPPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEK 194 (496)
T ss_pred cCChhHHHHHhHHHhhc----cCCCCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHH
Confidence 37888888886443311 0111235789999999998 9999999999999999999999999999876543221
Q ss_pred -------------hhc---------------cCCceeeeecCCCcccchHHHHHHHHHcC-CEEEecceeeEEEecCCCC
Q 018523 79 -------------LQE---------------KHGSKMAFLDGNPPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGT 129 (354)
Q Consensus 79 -------------~~~---------------~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~ 129 (354)
... ..+..+..++||| ++|+++|++.+ + ++|++|++|++|++++++.
T Consensus 195 ~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~ 270 (496)
T PLN02576 195 RGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGL-QTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGG 270 (496)
T ss_pred hcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchH-HHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCc
Confidence 100 0112345568898 79999999766 5 6899999999999865542
Q ss_pred EEEEEEc--CC-eEEEcCEEEEccChhhHhhhCCcchhhhHHHHHhhccCCccEEEEEEEeccccccc-------cCce-
Q 018523 130 VKNFLLT--NG-NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDHL- 198 (354)
Q Consensus 130 v~~V~~~--~g-~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-------~~~~- 198 (354)
+ .|++. +| ++++||+||+|+|++.+..++++. +....+.+.+++|.++.++++.|++++|.. ..++
T Consensus 271 ~-~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~--~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g 347 (496)
T PLN02576 271 Y-SLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK--SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFG 347 (496)
T ss_pred E-EEEEecCCCceeEEeCEEEECCCHHHHHHHhccc--CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceE
Confidence 3 24443 45 468999999999999999998753 234566788899999999999999876631 1121
Q ss_pred -eecc-Cc--ccchhcccccccccccCCCCcEEEEEec--CCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeE
Q 018523 199 -LFSR-SS--LLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVK 272 (354)
Q Consensus 199 -~~~~-~~--~~~~~~~~s~~~~~~~~~g~~~l~~~~~--~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~ 272 (354)
+... .+ ..+++. .+...|+..|++..++..+.. ....+.+++++++++.++++|.+++|.... ..+..
T Consensus 348 ~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~-----~~p~~ 421 (496)
T PLN02576 348 QLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGA-----PPPKV 421 (496)
T ss_pred EEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCC-----CCCcE
Confidence 1111 11 122221 122223334444445443332 345677789999999999999999985320 12344
Q ss_pred EEEEEeCCCccccCCCCCCCCCCCC---CCC--CceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 273 YHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 273 ~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
..+++|+++.+.+.+|+....+..+ .+. +|||+||||+.+ .++++|+.||.++|++|+..+.
T Consensus 422 ~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 422 VGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred EEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 5677899988888888632111111 122 699999999986 5999999999999999998764
No 9
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=2.6e-28 Score=233.54 Aligned_cols=309 Identities=15% Similarity=0.135 Sum_probs=216.3
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHH---
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF--- 78 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~--- 78 (354)
||+.+|++.+...+ .. .....+++|+.+|++++ ++++..+++++|++.++++.+++++|+...+..+..+
T Consensus 123 ~~~~~~~~~~~~~~----~~--~~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~ 195 (463)
T PRK12416 123 VSTKGKIVALKDFI----TK--NKEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNK 195 (463)
T ss_pred CCHHHHHHhhhhhc----cC--CCCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHh
Confidence 45666776643332 11 11235789999999987 8999999999999999999999999987654433111
Q ss_pred --------hhc------cCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcC
Q 018523 79 --------LQE------KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGD 144 (354)
Q Consensus 79 --------~~~------~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad 144 (354)
... ..+..+.+++||| ++|+++|++.+.+ ++|+++++|++|++++++ + .|++.+|+++.||
T Consensus 196 ~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~-~-~v~~~~g~~~~ad 270 (463)
T PRK12416 196 YGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR-Y-EISFANHESIQAD 270 (463)
T ss_pred cCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCE-E-EEEECCCCEEEeC
Confidence 000 1123466789998 7999999988753 689999999999986554 5 4777788889999
Q ss_pred EEEEccChhhHhhhCCcchhhhHHHHHhhccCCccEEEEEEEecccccc-ccC--ceeeccCccc---chhccccccccc
Q 018523 145 AYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYD--HLLFSRSSLL---SVYADMSLTCKE 218 (354)
Q Consensus 145 ~VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~s~~~~~ 218 (354)
+||+|+|++.+..|+++. +....+.++.+.++.++++.|+.+.+. ... +++.++.... ++. ..|...+.
T Consensus 271 ~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~-~~s~~~~~ 345 (463)
T PRK12416 271 YVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACT-WTSRKWKH 345 (463)
T ss_pred EEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEE-eecCCCCC
Confidence 999999999999988652 233346777888999999999976542 111 2333332211 111 11111122
Q ss_pred ccCCCCcEEEEEec----CCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCC---
Q 018523 219 YYNPNQSMLELVFA----PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP--- 291 (354)
Q Consensus 219 ~~~~g~~~l~~~~~----~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 291 (354)
..+++..++++++. ..+.+.+++++++.+.++++|+++++... +++...+.+|..+.+.+.+|+..
T Consensus 346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~-------~p~~~~v~~W~~a~P~y~~~~~~~~~ 418 (463)
T PRK12416 346 TSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG-------EPEVVEVTNWKDLMPKYHLEHNQAVQ 418 (463)
T ss_pred cCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC-------CceEEEEEEccccCCCcCcCHHHHHH
Confidence 22333344444432 23456678999999999999999998542 46778899999988888777421
Q ss_pred -CCCCCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 292 -CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 292 -~~~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
..+....+.+||++||+++.+ .+|++|+.||+++|++|++.+.
T Consensus 419 ~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 419 SLQEKMMNLYPNIYLAGASYYG---VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred HHHHHHHhhCCCeEEecccccc---ccHHHHHHHHHHHHHHHHHHhh
Confidence 112233456899999999886 5899999999999999997753
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=1.5e-27 Score=220.31 Aligned_cols=289 Identities=20% Similarity=0.265 Sum_probs=217.0
Q ss_pred cccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHh-----------hc---cC---Cc
Q 018523 23 AYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL-----------QE---KH---GS 85 (354)
Q Consensus 23 ~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~-----------~~---~~---g~ 85 (354)
+.+...++.|+.+|++++ |++++++++++|+++++|+.+++++|+....+.+.... +. +. ..
T Consensus 127 ~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~ 205 (444)
T COG1232 127 KSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKE 205 (444)
T ss_pred cCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccc
Confidence 346778999999999999 99999999999999999999999999996655442211 11 00 12
Q ss_pred eeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCcchhh
Q 018523 86 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKE 165 (354)
Q Consensus 86 ~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~~~~~ 165 (354)
.+.+++||+ ++|+++|++.+.. +|+++++|++|.++.++ . +++..+|+++.||.||+|+|++.+..++++.
T Consensus 206 ~~~~~~gG~-~~l~~al~~~l~~---~i~~~~~V~~i~~~~~~-~-~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~--- 276 (444)
T COG1232 206 KFGYLRGGL-QSLIEALAEKLEA---KIRTGTEVTKIDKKGAG-K-TIVDVGGEKITADGVISTAPLPELARLLGDE--- 276 (444)
T ss_pred cccccCccH-HHHHHHHHHHhhh---ceeecceeeEEEEcCCc-c-EEEEcCCceEEcceEEEcCCHHHHHHHcCCc---
Confidence 477889998 8999999988864 49999999999996444 3 3667788889999999999999999999872
Q ss_pred hHHHHHhhccCCccEEEEEEEecccc---ccccCceeecc-Cc-ccchhcccccccccccCCCCcEEEEEec-CCCC-CC
Q 018523 166 MAYFKRLEKLVGVPVINIHIWFDRKL---KNTYDHLLFSR-SS-LLSVYADMSLTCKEYYNPNQSMLELVFA-PAEE-WI 238 (354)
Q Consensus 166 ~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~~~~~~~~~-~~-~~~~~~~~s~~~~~~~~~g~~~l~~~~~-~~~~-~~ 238 (354)
.....++++.+.+..++.+.++++- .+...++.+.+ ++ ...+. ..|...|...|.|++++.+.+. +.+. ..
T Consensus 277 -~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~-~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~ 354 (444)
T COG1232 277 -AVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAIT-FHSNKWPHEAPEGKTLLRVEFGGPGDESVS 354 (444)
T ss_pred -chhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEE-EecccCCCCCCCCcEEEEEEeecCCCcchh
Confidence 2344567788988899999998861 11222344443 44 33333 3444445445667888776653 4333 34
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCC----CCCCCCCCCCceEEeeccccCCC
Q 018523 239 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP----CRPLQRSPVEGFYLAGDYTKQKY 314 (354)
Q Consensus 239 ~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~L~~aG~~~~~~~ 314 (354)
.+++||+++.++++|.++++...+ ++...+.+|+++.|+|.+|+.. .+..+.+..+||+.+|.|..+
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~~~-------~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g-- 425 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGINGD-------PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG-- 425 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcCcc-------hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC--
Confidence 578999999999999999987653 3478899999999999999632 222333344799999988775
Q ss_pred CCchhHHHHHHHHHHHHHH
Q 018523 315 LASMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 315 ~~~~~gAi~sG~~aa~~il 333 (354)
.++.+||.+|..||++++
T Consensus 426 -~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 426 -VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred -CCchHHHHHHHHHHHHhh
Confidence 489999999999999886
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=3.5e-27 Score=225.30 Aligned_cols=288 Identities=17% Similarity=0.226 Sum_probs=207.2
Q ss_pred cccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHh----------h-----c--cCCcee
Q 018523 25 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL----------Q-----E--KHGSKM 87 (354)
Q Consensus 25 ~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~----------~-----~--~~g~~~ 87 (354)
+...+++|+.|||++. ++++.++.+++|++..+|+.+++++|+...+..+..+. . . ..+..+
T Consensus 135 ~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T PRK11883 135 WKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVF 213 (451)
T ss_pred CCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCce
Confidence 3456889999999987 99999999999999999999999999987654432211 0 0 112345
Q ss_pred eeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCcchhhhH
Q 018523 88 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMA 167 (354)
Q Consensus 88 ~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~~~~~~~ 167 (354)
.+++||+ ++|++.|++.+.+. +|+++++|++|..++++ + .|++.+|++++||+||+|+|++.+.+++.+. .
T Consensus 214 ~~~~~G~-~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~ 284 (451)
T PRK11883 214 GTLKGGL-QSLIEALEEKLPAG--TIHKGTPVTKIDKSGDG-Y-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----P 284 (451)
T ss_pred EeeccHH-HHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCe-E-EEEECCCCEEEcCEEEECCCHHHHHHhccCh----h
Confidence 6789998 78999999776432 89999999999986444 5 4777888889999999999999999986542 2
Q ss_pred HHHHhhccCCccEEEEEEEecccc-cc-ccCceeecc-C--cccchhcccccccccccCCCCcEEEEEec-CCC-CCCCC
Q 018523 168 YFKRLEKLVGVPVINIHIWFDRKL-KN-TYDHLLFSR-S--SLLSVYADMSLTCKEYYNPNQSMLELVFA-PAE-EWISC 240 (354)
Q Consensus 168 ~~~~~~~~~~~~~~~v~l~~~~~~-~~-~~~~~~~~~-~--~~~~~~~~~s~~~~~~~~~g~~~l~~~~~-~~~-~~~~~ 240 (354)
..+.+++++|.++.++++.|++++ +. ...++++.. . ++..+..+ +...+...|++..++.+++. +.. ...+.
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~ 363 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDA 363 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccC
Confidence 355677888999999999999885 22 222344432 2 22233211 22223344555666655443 222 23467
Q ss_pred ChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCC----CCCCCCCCCCceEEeeccccCCCCC
Q 018523 241 SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP----CRPLQRSPVEGFYLAGDYTKQKYLA 316 (354)
Q Consensus 241 ~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~L~~aG~~~~~~~~~ 316 (354)
+++++++.+++.|+++++... .+....+.+|.++.+.+.++... .++.... ++||||||+|+.+ .
T Consensus 364 ~~~~~~~~~~~~L~~~~g~~~-------~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~ 432 (451)
T PRK11883 364 TDEELVAFVLADLSKVMGITG-------DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---V 432 (451)
T ss_pred CHHHHHHHHHHHHHHHhCCCC-------CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---c
Confidence 899999999999999997432 34567888999987777777422 1222223 6799999999874 6
Q ss_pred chhHHHHHHHHHHHHHHH
Q 018523 317 SMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 317 ~~~gAi~sG~~aa~~il~ 334 (354)
++++|+.||+++|++|+.
T Consensus 433 ~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 433 GLPDCIAQAKRAAARLLA 450 (451)
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 899999999999999975
No 12
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=1.3e-26 Score=222.77 Aligned_cols=299 Identities=15% Similarity=0.210 Sum_probs=212.2
Q ss_pred ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHH---------HHHhhcc----------C---Cc
Q 018523 28 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL---------NRFLQEK----------H---GS 85 (354)
Q Consensus 28 ~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~---------~~~~~~~----------~---g~ 85 (354)
.+++|+.||+.++ +++++++.+++|++..+|+.+++++|+.+++..+ ...+... . ..
T Consensus 130 ~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (479)
T PRK07208 130 KEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIE 208 (479)
T ss_pred CCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccccee
Confidence 3789999999997 8999999999999999999999999998765322 1111110 0 12
Q ss_pred eeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CCe--EEEcCEEEEccChhhHhhhCCc
Q 018523 86 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPE 161 (354)
Q Consensus 86 ~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~~~l~~ll~~ 161 (354)
.+.+|+||+ +.|+++|++.+++.|++|++|++|++|..++++++..++.. +|+ ++.||+||+|+|++.+..++++
T Consensus 209 ~~~~p~gG~-~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~ 287 (479)
T PRK07208 209 EFRYPKLGP-GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDP 287 (479)
T ss_pred EEeCCCCCc-chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCC
Confidence 577899998 79999999999999999999999999999656644334432 353 5889999999999999988764
Q ss_pred chhhhHHHHHhhccCCccEEEEEEEeccccccccCceeeccCc-ccchhcccccccccccCCCCc-EEEEEe--cCCCCC
Q 018523 162 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSS-LLSVYADMSLTCKEYYNPNQS-MLELVF--APAEEW 237 (354)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~g~~-~l~~~~--~~~~~~ 237 (354)
. .+....+.+++++|.++.++++.++++.........+.+.. ....+..++...+..+|+|.+ .+.+.+ ......
T Consensus 288 ~-~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~ 366 (479)
T PRK07208 288 P-PPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDL 366 (479)
T ss_pred C-CCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCcc
Confidence 2 23345566778889899999999998754222222222211 111111122233444566653 333222 223333
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCC---CCCCCCceEEeeccccCCC
Q 018523 238 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKY 314 (354)
Q Consensus 238 ~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~L~~aG~~~~~~~ 314 (354)
..++++++++.++++|.++.+ .. ..+++..++.+|+.+.+.+.++.....+. ..++.+|||+||++....|
T Consensus 367 ~~~~deel~~~~~~~L~~l~~-~~-----~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~ 440 (479)
T PRK07208 367 WNMSDEDLIALAIQELARLGL-IR-----PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY 440 (479)
T ss_pred ccCCHHHHHHHHHHHHHHcCC-CC-----hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc
Confidence 478999999999999999743 21 24688888999999988888775321111 2356789999998876655
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 018523 315 LASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 315 ~~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++++|+.||.++|++|++.-
T Consensus 441 -~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 441 -NNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred -CChhHHHHHHHHHHHHHhcCC
Confidence 599999999999999998764
No 13
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=5.7e-25 Score=211.89 Aligned_cols=292 Identities=22% Similarity=0.235 Sum_probs=195.9
Q ss_pred ccCCCHHHHHHHcC-CChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHH
Q 018523 28 QDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 106 (354)
Q Consensus 28 ~d~~s~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l 106 (354)
+..+|+.+|+++++ +.++.++.+++..+....+.+|++.++.+.+..+... ....| ..+++||+ ++|+++|++.+
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G--~~~~~GG~-~~l~~aL~~~~ 242 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA-QAPHG--LWHLHGSM-QTLSDRLVEAL 242 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc-ccCCC--ceeecCcH-HHHHHHHHHHH
Confidence 45799999999864 5667788888876643345678888887765433221 11122 45799998 89999999999
Q ss_pred HHcCCEEEecceeeEEEecCCCCEEEEEEcCC-----eEEEcCEEEEccChhhHhhhCCcchhhhHHHHHhhccCCcc-E
Q 018523 107 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP-V 180 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~~~~-~ 180 (354)
+++|++|+++++|++|..+ ++++.+|.+.+| +++.||+||+|+|+..+.+++++...+..+.+.++++++.+ .
T Consensus 243 ~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~ 321 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGA 321 (492)
T ss_pred HhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCce
Confidence 9999999999999999985 444556666554 57899999999999999998875323334556677777764 6
Q ss_pred EEEEEEecccc-c-cccCc--eeeccCcccchhcccccccccccCCCCcEEEEE-ecCCCCCCCC-------ChHHHHHH
Q 018523 181 INIHIWFDRKL-K-NTYDH--LLFSRSSLLSVYADMSLTCKEYYNPNQSMLELV-FAPAEEWISC-------SDSEIIDA 248 (354)
Q Consensus 181 ~~v~l~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~-~~~~~~~~~~-------~~ee~~~~ 248 (354)
+++++.+++.. . ..... ..+...+ +++...+..++..+|+|++++.+. ..+...|... .++++.+.
T Consensus 322 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~ 399 (492)
T TIGR02733 322 FVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQT 399 (492)
T ss_pred EEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHH
Confidence 78999998742 1 11111 2222222 222122223455688888876543 3333334321 24568888
Q ss_pred HHHHHHHhCCCCccccccccceeEEEEEEeCCC-----------ccccC--CCCC-CCCCCCCCCCCceEEeeccccCCC
Q 018523 249 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRS-----------VYKTI--PNCE-PCRPLQRSPVEGFYLAGDYTKQKY 314 (354)
Q Consensus 249 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~g~~-~~~~~~~~~~~~L~~aG~~~~~~~ 314 (354)
+++.|++++|++.+ .+....+.+|.. .|... +.+. ..++..++|++|||+||+++++|
T Consensus 400 il~~le~~~p~l~~-------~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG- 471 (492)
T TIGR02733 400 IIERLGHYFDLLEE-------NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG- 471 (492)
T ss_pred HHHHHHHHCCCccc-------cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC-
Confidence 99999999998863 233333434432 12211 1121 12344478999999999999986
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 018523 315 LASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 315 ~~~~~gAi~sG~~aa~~il~~ 335 (354)
+|+.+++.||+.||++|++.
T Consensus 472 -~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 472 -EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred -CcHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999853
No 14
>PLN02268 probable polyamine oxidase
Probab=99.94 E-value=1.6e-25 Score=212.61 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=190.8
Q ss_pred cccCCCHHHHHHHcC----------CChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcc
Q 018523 27 AQDGLTVQEWMRKQG----------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE 96 (354)
Q Consensus 27 ~~d~~s~~~~l~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~ 96 (354)
..+++|+.+|+++.. +++++++.++.+ +.+.++.+++++|+..+.. ...+ .|. ..++.+|+ +
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~~---~g~-~~~~~~G~-~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EELL---EGG-HGLMVRGY-D 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--cccc---CCC-ceeecCCH-H
Confidence 468899999876531 344445555555 3456778999999875321 1111 121 23467787 6
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh-CCc-chhhhHHHHHhhc
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPE-NWKEMAYFKRLEK 174 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l-l~~-~~~~~~~~~~~~~ 174 (354)
+|+++|++ +.+|+++++|++|..++++ + .|++.+|+++.||+||+|+|++.++.. +.. ...|....+++++
T Consensus 202 ~l~~~l~~-----~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~ 274 (435)
T PLN02268 202 PVINTLAK-----GLDIRLNHRVTKIVRRYNG-V-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISD 274 (435)
T ss_pred HHHHHHhc-----cCceeCCCeeEEEEEcCCc-E-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHh
Confidence 78777754 5589999999999986555 6 488888888999999999999999753 211 1134445677888
Q ss_pred cCCccEEEEEEEeccccccccC--ceeeccCcccchhcccccccccccCCCCcEEEEEec--CCCCCCCCChHHHHHHHH
Q 018523 175 LVGVPVINIHIWFDRKLKNTYD--HLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATM 250 (354)
Q Consensus 175 ~~~~~~~~v~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~--~~~~~~~~~~ee~~~~~~ 250 (354)
+.|.+..|+.+.|++++|+... +.+.........+.+. ....+..++.+... .+..+..++++++++.++
T Consensus 275 ~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~ 348 (435)
T PLN02268 275 LGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNL------HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAM 348 (435)
T ss_pred CCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEec------ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHH
Confidence 8999999999999999985321 1111111100111011 01234555554332 245667789999999999
Q ss_pred HHHHHhCCCCccccccccceeEEEEEEeCC-----Cccc-cCCCC-CCCCCCCCCCCCceEEeeccccCCCCCchhHHHH
Q 018523 251 KELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYK-TIPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVL 323 (354)
Q Consensus 251 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~g~-~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~ 323 (354)
++|.+++|... .++...+++|.. +.|. ..||+ ....+.+++|+++|||||++++..|+++|+||+.
T Consensus 349 ~~L~~~~~~~~-------~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~ 421 (435)
T PLN02268 349 SQLKKMLPDAT-------EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYS 421 (435)
T ss_pred HHHHHHcCCCC-------CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHH
Confidence 99999998643 345666677743 3343 34564 2234456788999999999999988899999999
Q ss_pred HHHHHHHHHHHHh
Q 018523 324 SGKLCAQAIVQDY 336 (354)
Q Consensus 324 sG~~aa~~il~~~ 336 (354)
||++||++|++.+
T Consensus 422 sG~raA~~v~~~l 434 (435)
T PLN02268 422 TGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 15
>PLN02676 polyamine oxidase
Probab=99.94 E-value=4.7e-25 Score=210.51 Aligned_cols=294 Identities=17% Similarity=0.158 Sum_probs=191.6
Q ss_pred cccCCCH--HHHHHHcCCChHHHHHHHHHHHh-hhccCCcccccHHHHHHHHHHHhhccCCceeeee-cCCCcccchHHH
Q 018523 27 AQDGLTV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL-DGNPPERLCLPI 102 (354)
Q Consensus 27 ~~d~~s~--~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~-~Gg~~~~l~~~l 102 (354)
..+++|+ .+++.+. +.........+.+.. ..++.+++++|+..++.. ..+ ....+..+.+. +||+ ++|++.|
T Consensus 155 ~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~-~~~g~~~~~~~~~~G~-~~l~~~L 230 (487)
T PLN02676 155 KAVDISILTAQRLFGQ-VPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF-VDFGEDEYFVADPRGY-ESLVYYL 230 (487)
T ss_pred CCCCccHHHHHHHHhh-CCCCHHHHHHHHHhccceeccCccccchhhcCcc-ccc-ccCCCceEEeecCCCH-HHHHHHH
Confidence 4678888 5556654 321112222233322 225778899999776431 111 11112222222 5787 7999999
Q ss_pred HHHHHHc------CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh--h-CCcchhhhHHHHHhh
Q 018523 103 VEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q-LPENWKEMAYFKRLE 173 (354)
Q Consensus 103 ~~~l~~~------g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l-l~~~~~~~~~~~~~~ 173 (354)
++.+.+. +.+|++|++|++|.+++++ | .|++.+|++++||+||+|+|+.+|+. + +.+. .|....++++
T Consensus 231 a~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~-LP~~k~~ai~ 307 (487)
T PLN02676 231 AEQFLSTKSGKITDPRLKLNKVVREISYSKNG-V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPP-LPDWKIEAIY 307 (487)
T ss_pred HhhcccccccccCCCceecCCEeeEEEEcCCc-E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCC-CCHHHHHHHH
Confidence 9866432 3679999999999986555 6 48898998999999999999999986 3 2221 3445567788
Q ss_pred ccCCccEEEEEEEeccccccc-cCce--eeccCc--ccchhcccccccccccCCCCcEEEEEe-c-CCCCCCCCChHHHH
Q 018523 174 KLVGVPVINIHIWFDRKLKNT-YDHL--LFSRSS--LLSVYADMSLTCKEYYNPNQSMLELVF-A-PAEEWISCSDSEII 246 (354)
Q Consensus 174 ~~~~~~~~~v~l~~~~~~~~~-~~~~--~~~~~~--~~~~~~~~s~~~~~~~~~g~~~l~~~~-~-~~~~~~~~~~ee~~ 246 (354)
++.+....|+++.|+++||+. .+.. .+.+.. ...++.... . .+++..++.+.+ . .+..+..+++++..
T Consensus 308 ~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~l~~~~~g~~a~~~~~~s~e~~~ 382 (487)
T PLN02676 308 QFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLE---N--EYPGSNVLFVTVTDEESRRIEQQPDSETK 382 (487)
T ss_pred hCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcc---c--CCCCCCEEEEEechHHHHHHHhCCHHHHH
Confidence 889999999999999999963 2211 222111 111110000 0 122334544333 3 24556678999999
Q ss_pred HHHHHHHHHhCCCCccccccccceeEEEEEEe---CC--Cccc-cCCCCC-CCCCCCCCCCCceEEeeccccCCCCCchh
Q 018523 247 DATMKELAKLFPDEISADQSKAKIVKYHVVKT---PR--SVYK-TIPNCE-PCRPLQRSPVEGFYLAGDYTKQKYLASME 319 (354)
Q Consensus 247 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~---~~--~~~~-~~~g~~-~~~~~~~~~~~~L~~aG~~~~~~~~~~~~ 319 (354)
+.+++.|.++||... ..++....+.| |+ +.|. +.||.. ...+.++.|+++|||||++++..|+++|+
T Consensus 383 ~~vl~~L~~~~g~~~------~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~e 456 (487)
T PLN02676 383 AEIMEVLRKMFGPNI------PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVH 456 (487)
T ss_pred HHHHHHHHHHhCCCC------CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchH
Confidence 999999999997432 12444445555 33 4454 345652 33456678999999999999988889999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 018523 320 GAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 320 gAi~sG~~aa~~il~~~~~ 338 (354)
||+.||++||++|++.++.
T Consensus 457 GA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 457 GAYLAGIDTANDLLECIKK 475 (487)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998765
No 16
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=6.5e-25 Score=198.28 Aligned_cols=236 Identities=19% Similarity=0.160 Sum_probs=172.4
Q ss_pred ecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh-CCcchhhhHH
Q 018523 90 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPENWKEMAY 168 (354)
Q Consensus 90 ~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l-l~~~~~~~~~ 168 (354)
+-||| +.|++++++.| |.+|+++++|.+|.++++| |+ |++.+..++.+|.||||+|+.++..| +.+. .+..+
T Consensus 204 ~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~g-V~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~-l~~~~ 276 (450)
T COG1231 204 RLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGDG-VT-VTADDVGQYVADYVLVTIPLAILGQIDFAPL-LPAEY 276 (450)
T ss_pred cCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCCe-EE-EEeCCcceEEecEEEEecCHHHHhhcccCCC-CCHHH
Confidence 34898 89999999665 8899999999999997666 74 88877568999999999999999987 4442 35567
Q ss_pred HHHhhccCCccEEEEEEEecccccc--c-cCceeeccCcccchhcccccccccccCCCCcEEEE--Ee-cCCCCCCCCCh
Q 018523 169 FKRLEKLVGVPVINIHIWFDRKLKN--T-YDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL--VF-APAEEWISCSD 242 (354)
Q Consensus 169 ~~~~~~~~~~~~~~v~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~--~~-~~~~~~~~~~~ 242 (354)
++++..++|.+..|+.+.|+++||+ + +++..++|.++..+. ..|. .+ ..|..|+.- .+ ..+..|..+++
T Consensus 277 ~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~-~~s~---~~-~~G~gVl~g~~~~g~~A~~~~~~~~ 351 (450)
T COG1231 277 KQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFIS-YPSA---PF-ADGPGVLLGSYAFGDDALVIDALPE 351 (450)
T ss_pred HHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEe-cCcc---cc-CCCceEEEeeeeccccceeEecCCH
Confidence 8888889999999999999999995 4 667788887743222 2221 01 134444432 22 35678889999
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccc-cCCCC-CCCCCCCCCCCCceEEeeccccCCCCCchhH
Q 018523 243 SEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYK-TIPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEG 320 (354)
Q Consensus 243 ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~g 320 (354)
++.++.++..+.++||+.....+......+|.-..|-.+.+. +.||+ ..+.+.+..|.++|||||..+.+.|+++++|
T Consensus 352 ~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eG 431 (450)
T COG1231 352 AERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEG 431 (450)
T ss_pred HHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHH
Confidence 999999999999999965432121112222222223334232 34565 3455677788999999997777778899999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018523 321 AVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 321 Ai~sG~~aa~~il~~~~ 337 (354)
|++||.+||.+|...+.
T Consensus 432 Ai~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 432 AIRSGQRAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999987654
No 17
>PLN02568 polyamine oxidase
Probab=99.93 E-value=3.5e-24 Score=205.92 Aligned_cols=298 Identities=18% Similarity=0.189 Sum_probs=197.8
Q ss_pred CCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHh--------------hc------cCCceeee
Q 018523 30 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL--------------QE------KHGSKMAF 89 (354)
Q Consensus 30 ~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~--------------~~------~~g~~~~~ 89 (354)
+.|+.+|++++ +++ .++.+.+|+....++.++++.+....+..+..+. .. ..| ....
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g-~~~~ 236 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG-EEIT 236 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC-CeEE
Confidence 45999999987 655 5666777877777777777777766655443221 00 011 2345
Q ss_pred ecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh-------CCcc
Q 018523 90 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-------LPEN 162 (354)
Q Consensus 90 ~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l-------l~~~ 162 (354)
+.||+ ++|++.|++.|. +.+|++|++|++|.+++++ + .|++.+|++++||+||+|+|+.++++. +.+.
T Consensus 237 i~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v-~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 237 IAKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-V-KLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred ECCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-E-EEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 68887 799999998774 4689999999999986444 6 488888888999999999999999852 2222
Q ss_pred hhhhHHHHHhhccCCccEEEEEEEeccccccc------cCce--eeccCcc------c-chhcccccccccccCCCCcEE
Q 018523 163 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT------YDHL--LFSRSSL------L-SVYADMSLTCKEYYNPNQSML 227 (354)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~------~~~~--~~~~~~~------~-~~~~~~s~~~~~~~~~g~~~l 227 (354)
.|....++++++.+..+.|+++.|+++||.. +..+ ++.+.+. . ..+......++ ...+..++
T Consensus 312 -LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vL 388 (539)
T PLN02568 312 -LPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP--IHKNSSVL 388 (539)
T ss_pred -CCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc--cCCCCCEE
Confidence 3445677889999999999999999998741 1111 1111110 0 00000000000 01234454
Q ss_pred E-EEec-CCCCCCCCChHHHHHHHHHHHHHhCCCCccc----------------cccccceeEEEEEEeC---C--Cccc
Q 018523 228 E-LVFA-PAEEWISCSDSEIIDATMKELAKLFPDEISA----------------DQSKAKIVKYHVVKTP---R--SVYK 284 (354)
Q Consensus 228 ~-~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~----------------~~~~~~~~~~~~~~~~---~--~~~~ 284 (354)
. +... .+..+..++++++++.+++.|.++||....+ ......++....++|. + +.|.
T Consensus 389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 4 4443 3566778999999999999999999743110 0001245666666663 2 4566
Q ss_pred cC-CCCCC-CCCCCCCCC-------------CceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 285 TI-PNCEP-CRPLQRSPV-------------EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 285 ~~-~g~~~-~~~~~~~~~-------------~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+. ||... ....++.|+ ++|||||++++..|+++|+||+.||+++|++|++.++.
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~~ 537 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYKC 537 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhcc
Confidence 54 56522 223344444 37999999999999999999999999999999998764
No 18
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.92 E-value=1.5e-22 Score=194.90 Aligned_cols=291 Identities=18% Similarity=0.266 Sum_probs=193.8
Q ss_pred cCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHHHH
Q 018523 29 DGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 108 (354)
Q Consensus 29 d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~ 108 (354)
-..|+.++++++ +.++.++.++...+......++.++++..++..+... .. ....+++||+ ..|+++|.+.+++
T Consensus 168 ~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~---~~-~g~~~~~gG~-~~l~~~L~~~~~~ 241 (493)
T TIGR02730 168 LPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDR---HY-GGINYPKGGV-GQIAESLVKGLEK 241 (493)
T ss_pred hhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhccc---cc-ceEecCCChH-HHHHHHHHHHHHH
Confidence 358999999998 7777788787765543322345778776665433211 11 2357899997 7999999999999
Q ss_pred cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhCCcchhhhHHHHHhhccCCc-cEEEEEEE
Q 018523 109 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVGV-PVINIHIW 186 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll~~~~~~~~~~~~~~~~~~~-~~~~v~l~ 186 (354)
+|++|+++++|++|..+ ++++.+|.+.+|+++++|+||++++++ .+.+|++....+......++++++. +.+++++.
T Consensus 242 ~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~ 320 (493)
T TIGR02730 242 HGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLG 320 (493)
T ss_pred CCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEE
Confidence 99999999999999985 566778999889889999999988765 4456887542232333334555554 68899999
Q ss_pred ecccccc---ccCceeecc-------CcccchhcccccccccccCCCCcEEEEEe-cCCCCCCCC-------ChHHHHHH
Q 018523 187 FDRKLKN---TYDHLLFSR-------SSLLSVYADMSLTCKEYYNPNQSMLELVF-APAEEWISC-------SDSEIIDA 248 (354)
Q Consensus 187 ~~~~~~~---~~~~~~~~~-------~~~~~~~~~~s~~~~~~~~~g~~~l~~~~-~~~~~~~~~-------~~ee~~~~ 248 (354)
++.+..+ ..+.+++.+ ++...+ ..++..+|+.+|+|++++.+.. .+...|.+. .++++.+.
T Consensus 321 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v-~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~ 399 (493)
T TIGR02730 321 VKADVLPPGTECHHILLEDWTNLEKPQGTIFV-SIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAER 399 (493)
T ss_pred ecCccCCCCCCccEEecchhhccCCCCCeEEE-EeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHH
Confidence 9875421 112233221 111111 1123345677888888776443 233444332 24568888
Q ss_pred HHHHHHHhCCCCccccccccceeEEEEEEeCC----------CccccCCCC--C-CCC-CCCCCCCCceEEeeccccCCC
Q 018523 249 TMKELAKLFPDEISADQSKAKIVKYHVVKTPR----------SVYKTIPNC--E-PCR-PLQRSPVEGFYLAGDYTKQKY 314 (354)
Q Consensus 249 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~--~-~~~-~~~~~~~~~L~~aG~~~~~~~ 314 (354)
+++.|++++|++++ .+....+.+|. +.|...+.. . ..+ |..++|++|||+||+++++|
T Consensus 400 il~~l~~~~p~l~~-------~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG- 471 (493)
T TIGR02730 400 IIDRLEKIFPGLDS-------AIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG- 471 (493)
T ss_pred HHHHHHHHCCChhh-------cEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC-
Confidence 99999999998863 23333333333 223211111 1 112 45678999999999999886
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 018523 315 LASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 315 ~~~~~gAi~sG~~aa~~il~~~ 336 (354)
+++.+|+.||+.||++|++++
T Consensus 472 -~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 472 -QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred -CCHHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999864
No 19
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.92 E-value=6.9e-23 Score=198.00 Aligned_cols=290 Identities=20% Similarity=0.200 Sum_probs=194.2
Q ss_pred cccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHH
Q 018523 27 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 106 (354)
Q Consensus 27 ~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l 106 (354)
.....|+.+|++++ +.++.++.++... ..+++.+|++.++.+.+..+..+ . ....+++||+ ..++++|.+.+
T Consensus 158 ~~~~~s~~~~~~~~-~~~~~l~~~l~~~-~~~~g~~p~~~~~~~~l~~~~~~---~--~g~~~~~gG~-~~l~~al~~~~ 229 (502)
T TIGR02734 158 LLAWRSLYSKVARF-FSDERLRQAFSFH-ALFLGGNPFRTPSIYALISALER---E--WGVWFPRGGT-GALVAAMAKLA 229 (502)
T ss_pred ccCcCCHHHHHHhh-cCCHHHHHHhccc-ceeeccCcccchHHHHHHHHHHh---h--ceEEEcCCCH-HHHHHHHHHHH
Confidence 34679999999998 7777788777642 23456788888876655332221 1 1355899997 79999999999
Q ss_pred HHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHh-hhCCcchhhhHHHHHhhccCC-ccEEEEE
Q 018523 107 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK-LQLPENWKEMAYFKRLEKLVG-VPVINIH 184 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~-~ll~~~~~~~~~~~~~~~~~~-~~~~~v~ 184 (354)
++.|++|+++++|++|..+ ++++++|++.+|++++||+||+|+++..+. .|++....+....+.++++++ .+.++++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~ 308 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLY 308 (502)
T ss_pred HHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEE
Confidence 9999999999999999985 455667888888889999999999986665 566653222222334455554 4688899
Q ss_pred EEec---ccccc-ccCceeeccC-----------------cccchhcccccccccccCCCCcEEEEE-ecCCC-----CC
Q 018523 185 IWFD---RKLKN-TYDHLLFSRS-----------------SLLSVYADMSLTCKEYYNPNQSMLELV-FAPAE-----EW 237 (354)
Q Consensus 185 l~~~---~~~~~-~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~~~~g~~~l~~~-~~~~~-----~~ 237 (354)
+.++ +++.. ..+.+++.++ +...+ ..+|..+++.+|+|++.+.+. ..+.. .|
T Consensus 309 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v-~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~ 387 (502)
T TIGR02734 309 FGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYL-HRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDW 387 (502)
T ss_pred EeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEE-EcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCc
Confidence 9998 34331 1223333211 11111 112344567788888766533 33322 24
Q ss_pred CCCChHHHHHHHHHHHHHh-CCCCccccccccceeEEEEEEeCC----------C-ccccCC--CC-CCCCCC-CCCCCC
Q 018523 238 ISCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPR----------S-VYKTIP--NC-EPCRPL-QRSPVE 301 (354)
Q Consensus 238 ~~~~~ee~~~~~~~~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~--g~-~~~~~~-~~~~~~ 301 (354)
.+ .++++.+.+++.|++. +|++++ .++ ...+.+|. | .|.... .+ ...+|. .+++++
T Consensus 388 ~~-~k~~~~~~il~~l~~~~~p~l~~------~i~-~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~ 459 (502)
T TIGR02734 388 SV-EGPRYRDRILAYLEERAIPGLRD------RIV-VERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKID 459 (502)
T ss_pred HH-HHHHHHHHHHHHHHHhcCCChhH------heE-EEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCC
Confidence 32 3567889999999998 998863 233 33333332 1 122211 12 124553 467899
Q ss_pred ceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 302 GFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 302 ~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
|||+||+++++| +|+.+|+.||+.||++|++++
T Consensus 460 gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 460 NLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred CEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 999999999986 699999999999999999864
No 20
>PLN02529 lysine-specific histone demethylase 1
Probab=99.92 E-value=4.4e-23 Score=202.29 Aligned_cols=288 Identities=16% Similarity=0.181 Sum_probs=184.1
Q ss_pred cccCCCHHHHHHHcC------CChHHHHHHHHHHHhhhc---cCCcccccHHHHHHHHHHHhhccCCceeeeecCCCccc
Q 018523 27 AQDGLTVQEWMRKQG------VPDRVTTEVFIAMSKALN---FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPER 97 (354)
Q Consensus 27 ~~d~~s~~~~l~~~g------~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~ 97 (354)
..+++|+.+|+++.. +++.. +.+++.....+. +.+.+.+|+..+... ... ..+.....+.||+ ++
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~--~~~--e~~G~~~~i~GG~-~~ 358 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQD--DPY--EMGGDHCFLAGGN-WR 358 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhc--ccc--ccCCceEEECCcH-HH
Confidence 468899999998642 34432 346665553332 334444444333221 001 1122345678887 78
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh---CCcchhhhHHHHHhhc
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYFKRLEK 174 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l---l~~~~~~~~~~~~~~~ 174 (354)
|+++|++. ..|++|++|++|.+++++ | .|++ ++++++||+||+|+|++++++. +.+. .|....+++.+
T Consensus 359 Li~aLA~~-----L~IrLnt~V~~I~~~~dG-V-tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~Pp-LP~~K~~AI~r 429 (738)
T PLN02529 359 LINALCEG-----VPIFYGKTVDTIKYGNDG-V-EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPE-LPRRKLAAIDR 429 (738)
T ss_pred HHHHHHhc-----CCEEcCCceeEEEEcCCe-E-EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCC-CCHHHHHHHHc
Confidence 99988853 369999999999996555 5 3664 4568999999999999999843 2221 24456778999
Q ss_pred cCCccEEEEEEEeccccccc-cCce--eeccC---cccchhcccccccccccCCCCcEE-EEEec-CCCCCCCCChHHHH
Q 018523 175 LVGVPVINIHIWFDRKLKNT-YDHL--LFSRS---SLLSVYADMSLTCKEYYNPNQSML-ELVFA-PAEEWISCSDSEII 246 (354)
Q Consensus 175 ~~~~~~~~v~l~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~s~~~~~~~~~g~~~l-~~~~~-~~~~~~~~~~ee~~ 246 (354)
+.|.++.|+++.|+++||.. .+.+ +.... ....++.+.+ .+.+..++ +++.. .+..+..+++++++
T Consensus 430 L~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~------~~~ggpvLvafv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 430 LGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYH------TVSGGPALVALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCC------CCCCCCEEEEEECchhhHHHhcCCHHHHH
Confidence 99999999999999999952 1211 11111 1111111111 11233444 44433 34567778999999
Q ss_pred HHHHHHHHHhCCCCccccccccceeEEEEEEeCC-----CccccC-CCC-CCCCCCCCCC-CCceEEeeccccCCCCCch
Q 018523 247 DATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKTI-PNC-EPCRPLQRSP-VEGFYLAGDYTKQKYLASM 318 (354)
Q Consensus 247 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~g~-~~~~~~~~~~-~~~L~~aG~~~~~~~~~~~ 318 (354)
+.+++.|+++|+.... ....++...+++|.. +.|.+. |+. ......+..| .++|||||++++..||++|
T Consensus 504 ~~vl~~L~~ifgp~~~---~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtV 580 (738)
T PLN02529 504 HRVLSVLRGIYNPKGI---NVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATM 580 (738)
T ss_pred HHHHHHHHHHhCcccc---ccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEe
Confidence 9999999999963110 011345566666643 345432 333 1111233455 4789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 018523 319 EGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 319 ~gAi~sG~~aa~~il~~~~~ 338 (354)
+||+.||.+||++|++.+..
T Consensus 581 eGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 581 HGAFLSGLREASRILHVARS 600 (738)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 21
>PLN02976 amine oxidase
Probab=99.91 E-value=5.3e-23 Score=207.81 Aligned_cols=256 Identities=18% Similarity=0.211 Sum_probs=174.4
Q ss_pred cCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecC---------CCCE
Q 018523 60 FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---------DGTV 130 (354)
Q Consensus 60 ~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~---------~g~v 130 (354)
+.+++++|+.++... ..| ..-.| ....+.||| ++|+++|++.+ .|++|++|++|.+.. ++.|
T Consensus 904 aa~L~eVSl~~~~qd-~~y-~~fgG-~~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV 974 (1713)
T PLN02976 904 AALLKEVSLPYWNQD-DVY-GGFGG-AHCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV 974 (1713)
T ss_pred cCCHHHhhhhhhhcc-ccc-ccCCC-ceEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE
Confidence 567889988754321 001 11122 344578898 79999998755 599999999999841 2336
Q ss_pred EEEEEcCCeEEEcCEEEEccChhhHhh--h-CCcchhhhHHHHHhhccCCccEEEEEEEecccccccc-Cce--eeccCc
Q 018523 131 KNFLLTNGNVIDGDAYVFATPVDILKL--Q-LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHL--LFSRSS 204 (354)
Q Consensus 131 ~~V~~~~g~~~~ad~VI~a~p~~~l~~--l-l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~~~--~~~~~~ 204 (354)
.|++.+|++++||+||+|+|+.+|+. + +.+. .|.....+|.++.++...|+++.|+++||+.. ..+ ...+.+
T Consensus 975 -tVtTsDGetftADaVIVTVPLGVLKag~I~FsPP-LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtd 1052 (1713)
T PLN02976 975 -KVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPP-LPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETD 1052 (1713)
T ss_pred -EEEECCCCEEEeceEEEeCCHHHhhhcccccCCc-ccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCC
Confidence 48888898999999999999999983 3 3222 34455677899999999999999999999631 111 111111
Q ss_pred ccch---hcccccccccccCCCCcEE-EEEec-CCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeC
Q 018523 205 LLSV---YADMSLTCKEYYNPNQSML-ELVFA-PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTP 279 (354)
Q Consensus 205 ~~~~---~~~~s~~~~~~~~~g~~~l-~~~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 279 (354)
..+. +++.. .+.+..+| +++.. .+..+..++++++++.+++.|.++||... ...++...+++|.
T Consensus 1053 lrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~-----iPdPv~~vvTrWs 1121 (1713)
T PLN02976 1053 LRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEAL-----VPDPVASVVTDWG 1121 (1713)
T ss_pred CCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCccc-----ccCcceeEEecCC
Confidence 1111 11111 12344454 44443 34566778999999999999999998532 1245666677773
Q ss_pred ---C--CccccC-CCCC-CCCCCCCCCCCc-eEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 280 ---R--SVYKTI-PNCE-PCRPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 280 ---~--~~~~~~-~g~~-~~~~~~~~~~~~-L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+ |.|.+. ||.. .....+..|++| |||||++++..|+++|+||+.||.+||++|+..+.
T Consensus 1122 sDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1122 RDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3 445543 5652 233445678766 99999999999999999999999999999998874
No 22
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=190.66 Aligned_cols=330 Identities=35% Similarity=0.506 Sum_probs=251.3
Q ss_pred CCChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhh
Q 018523 1 MLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ 80 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~ 80 (354)
.+.+++|++++..+.....+.++.++++|++|++|||++.|.+...++..|.+......+.+++.+|+..++..+..++.
T Consensus 119 ~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~ 198 (485)
T COG3349 119 QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLI 198 (485)
T ss_pred ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHH
Confidence 36789999998777643222356788999999999999998888889999999998777899999999998887766544
Q ss_pred cc-CCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecC---CCCEEEEEEcCCe---EEEcCEEEEccChh
Q 018523 81 EK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---DGTVKNFLLTNGN---VIDGDAYVFATPVD 153 (354)
Q Consensus 81 ~~-~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~---~g~v~~V~~~~g~---~~~ad~VI~a~p~~ 153 (354)
.. ++.-....+|+..+.+..++.+.+++.|.+++.+++|+.|..+. +..++++.+. +. ...++.|+.+....
T Consensus 199 ~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~ 277 (485)
T COG3349 199 VTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQ 277 (485)
T ss_pred hccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccc
Confidence 33 34344566888779999999999999999999999999998754 3446677765 53 33456777777778
Q ss_pred hHhhhCCcchhhhHHHHHhhccCCccEEEEEEEeccccccc--------cCceeeccCcccchhcccccccccccCCCC-
Q 018523 154 ILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT--------YDHLLFSRSSLLSVYADMSLTCKEYYNPNQ- 224 (354)
Q Consensus 154 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~- 224 (354)
.+.+++|..+.+....+.+..++..+..+++++++...+.. ..+..+++.+..+++.+....++.+..++.
T Consensus 278 ~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~ 357 (485)
T COG3349 278 RFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAG 357 (485)
T ss_pred hHhhcCcccccccccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccch
Confidence 88888888776455666777777889999999998754421 111223344444444444444444444442
Q ss_pred cEEEEEecCCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceE
Q 018523 225 SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFY 304 (354)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~ 304 (354)
..+.....+...|...+++++...+.+.+...+|...+ ++ ...+.+..+.+.+...||...++|...+|++|++
T Consensus 358 ~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~-----a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~ 431 (485)
T COG3349 358 CYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAE-----AK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLL 431 (485)
T ss_pred hhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhc-----cc-ccccceeccccccccCCCccccCCCCCCCccchh
Confidence 44444455667777888999999999999988887653 23 5567777888999999998888999999999999
Q ss_pred EeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 305 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 305 ~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
++||++...+-++||+|..||++||+.|++.+.
T Consensus 432 laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~ 464 (485)
T COG3349 432 LAGDYTKQPYLGSMEGATLSGLLAANAILDNLG 464 (485)
T ss_pred hccceeecCCcCccchhhhhHHHHHHHHHHhhh
Confidence 999999876767999999999999999997765
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.91 E-value=4e-24 Score=202.67 Aligned_cols=293 Identities=28% Similarity=0.410 Sum_probs=182.6
Q ss_pred cccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhh-----ccCCceeeeecCCCcccch
Q 018523 25 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----EKHGSKMAFLDGNPPERLC 99 (354)
Q Consensus 25 ~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~-----~~~g~~~~~~~Gg~~~~l~ 99 (354)
+......++.+++....+.+.....++.++.....+..+...++......+..... ......+....|++ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~ 212 (450)
T PF01593_consen 137 FLEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGL----S 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTT----H
T ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccch----h
Confidence 33445677778776654544443334445554433345555666533332222110 01111233445553 3
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh--hCCcchhhhHHHHHhhccCC
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVG 177 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--ll~~~~~~~~~~~~~~~~~~ 177 (354)
..+...+...|++|++|++|++|+.+ +++| .|++.+|++++||+||+|+|++.+.+ +.|.. +....+++++++|
T Consensus 213 ~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l--~~~~~~a~~~~~~ 288 (450)
T PF01593_consen 213 LALALAAEELGGEIRLNTPVTRIERE-DGGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPPL--PEDKRRAIENLPY 288 (450)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEEEE-SSEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEESTS--HHHHHHHHHTEEE
T ss_pred HHHHHHHhhcCceeecCCcceecccc-cccc-ccccccceEEecceeeecCchhhhhhhhhcccc--ccccccccccccc
Confidence 34444445568899999999999996 4557 48999999999999999999999996 34442 3335566788889
Q ss_pred ccEEEEEEEeccccccc---cCceeeccC-cccchhcccccccccccCCCCcEE-EEEecC-CCCCCCCChHHHHHHHHH
Q 018523 178 VPVINIHIWFDRKLKNT---YDHLLFSRS-SLLSVYADMSLTCKEYYNPNQSML-ELVFAP-AEEWISCSDSEIIDATMK 251 (354)
Q Consensus 178 ~~~~~v~l~~~~~~~~~---~~~~~~~~~-~~~~~~~~~s~~~~~~~~~g~~~l-~~~~~~-~~~~~~~~~ee~~~~~~~ 251 (354)
.+..++++.++.++|.. ..++++.+. ....++.+.+.. ++. ++..++ .++..+ ...+..++++++++.+++
T Consensus 289 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~ 365 (450)
T PF01593_consen 289 SSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKF-PGR--PGGGVLTSYVGGPDAPEWDDLSDEEILERVLD 365 (450)
T ss_dssp EEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCT-TSC--TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcceeEEEeeecccccccccccceecccCccccccccccccC-ccc--ccCCcceeeeeccccchhcccchhhhHHHHHH
Confidence 99999999999999853 234444444 111122122211 111 233444 444432 356778899999999999
Q ss_pred HHHHhCCCCccccccccceeEEEEEEeCC-----CccccC-CCCC-CCCCCCCCCC-CceEEeeccccCCCCCchhHHHH
Q 018523 252 ELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKTI-PNCE-PCRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVL 323 (354)
Q Consensus 252 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~g~~-~~~~~~~~~~-~~L~~aG~~~~~~~~~~~~gAi~ 323 (354)
+|++++|... ..++.+..+.+|.. +.|.+. ++.. ..++..++|+ +||||||||++++++++++||+.
T Consensus 366 ~L~~~~~~~~-----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~ 440 (450)
T PF01593_consen 366 DLRKILPGAS-----IPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAIL 440 (450)
T ss_dssp HHHHHHTTGG-----GGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHH
T ss_pred Hhhhcccccc-----ccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHH
Confidence 9999999521 12344566667755 223222 2221 1345567787 69999999999887789999999
Q ss_pred HHHHHHHHHH
Q 018523 324 SGKLCAQAIV 333 (354)
Q Consensus 324 sG~~aa~~il 333 (354)
||++||++||
T Consensus 441 sG~~aA~~il 450 (450)
T PF01593_consen 441 SGRRAAEEIL 450 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999986
No 24
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.91 E-value=2.1e-22 Score=198.44 Aligned_cols=235 Identities=18% Similarity=0.224 Sum_probs=164.0
Q ss_pred eeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh--h--CCcc
Q 018523 87 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q--LPEN 162 (354)
Q Consensus 87 ~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l--l~~~ 162 (354)
..++.||+ ++|+++|++.+ .|++|++|++|.+++++ |+ | +.+|++++||+||+|+|++++++ + .|+
T Consensus 429 ~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V~-V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~- 498 (808)
T PLN02328 429 HCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVDG-VI-V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE- 498 (808)
T ss_pred EEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCCe-EE-E-EeCCeEEEcCEEEECCCHHHHhhcccccCCC-
Confidence 55678887 79999998765 49999999999996555 52 5 45788899999999999999984 2 333
Q ss_pred hhhhHHHHHhhccCCccEEEEEEEecccccccc-C--ceeeccCcccc---hhcccccccccccCCCCcEEEEE-ec-CC
Q 018523 163 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLS---VYADMSLTCKEYYNPNQSMLELV-FA-PA 234 (354)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~--~~~~~~~~~~~---~~~~~s~~~~~~~~~g~~~l~~~-~~-~~ 234 (354)
.|....++|+++.|..+.|+++.|+++||... + +.+..+....+ .+.+.+. ..+..++..+ .. .+
T Consensus 499 -LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~------~~G~~vLvafv~G~~A 571 (808)
T PLN02328 499 -LPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSS------VSGGPLLIALVAGDAA 571 (808)
T ss_pred -CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCC------CCCCcEEEEEecChhh
Confidence 34466778999999999999999999999531 1 22222221111 1112111 1344555533 33 34
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCC-----Ccccc-CCCCC-CCCCCCCCCC--CceEE
Q 018523 235 EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCE-PCRPLQRSPV--EGFYL 305 (354)
Q Consensus 235 ~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~g~~-~~~~~~~~~~--~~L~~ 305 (354)
..+..++++++++.+++.|.++|+.... ....+....+++|.. |.|.+ .+|+. ...+.+..|+ ++|||
T Consensus 572 ~~~e~lsdeE~v~~vL~~Lr~ifgp~~~---~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~F 648 (808)
T PLN02328 572 VKFETLSPVESVKRVLQILRGIFHPKGI---VVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFF 648 (808)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCcccc---cccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEE
Confidence 5667789999999999999999873210 012456667777753 34443 35542 2233445554 58999
Q ss_pred eeccccCCCCCchhHHHHHHHHHHHHHHHHhhhHHH
Q 018523 306 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 341 (354)
Q Consensus 306 aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~~~~ 341 (354)
||++++..|+++|+||+.||.++|++|++.+..-..
T Consensus 649 AGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~ 684 (808)
T PLN02328 649 AGEATNKQYPATMHGAFLSGMREAANILRVARRRSL 684 (808)
T ss_pred EEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999888899999999999999999998765443
No 25
>PLN03000 amine oxidase
Probab=99.91 E-value=1.5e-22 Score=199.37 Aligned_cols=235 Identities=18% Similarity=0.260 Sum_probs=165.9
Q ss_pred eeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh--h--CCcc
Q 018523 87 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q--LPEN 162 (354)
Q Consensus 87 ~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l--l~~~ 162 (354)
...+.||+ ++|+++|++.| .|+++++|++|.+++++ | .|++. +++++||+||+|+|+.+++. + .|+
T Consensus 373 ~~~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dg-V-~V~~~-~~~~~AD~VIvTVPlgVLk~~~I~F~Pp- 442 (881)
T PLN03000 373 HCFLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGSNG-V-KVIAG-NQVYEGDMVLCTVPLGVLKNGSIKFVPE- 442 (881)
T ss_pred eEEeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECCCe-E-EEEEC-CcEEEeceEEEcCCHHHHhhCceeeCCC-
Confidence 44567898 79999999766 49999999999996555 5 36654 45899999999999999993 3 444
Q ss_pred hhhhHHHHHhhccCCccEEEEEEEecccccccc-C--ceeeccCc---ccchhcccccccccccC-CCCcEEE-EEec-C
Q 018523 163 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSS---LLSVYADMSLTCKEYYN-PNQSMLE-LVFA-P 233 (354)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~--~~~~~~~~---~~~~~~~~s~~~~~~~~-~g~~~l~-~~~~-~ 233 (354)
.|....++|.++.|....||++.|+++||... + +.+..+.. ...++.+. .+ .+..++. ++.. .
T Consensus 443 -LP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~-------sp~~G~pVLvafv~Gd~ 514 (881)
T PLN03000 443 -LPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSY-------APVAGGPLLIALVAGEA 514 (881)
T ss_pred -CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCC-------CCCCCCcEEEEEecCch
Confidence 34456778999999999999999999999521 2 22222111 11111111 12 3445555 4443 3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCC-----Ccccc-CCCCC-CCCCCCCCCC--CceE
Q 018523 234 AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKT-IPNCE-PCRPLQRSPV--EGFY 304 (354)
Q Consensus 234 ~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~g~~-~~~~~~~~~~--~~L~ 304 (354)
+..+..++++++++.+++.|+++|+.... ...+++...+++|.. |.|.+ .||+. ...+.+..|+ ++||
T Consensus 515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~---~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIf 591 (881)
T PLN03000 515 AHKFETMPPTDAVTRVLHILRGIYEPQGI---NVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLF 591 (881)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhCcccc---ccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEE
Confidence 56677899999999999999999973210 011355666677743 44553 35642 2334456665 5899
Q ss_pred EeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhHHHh
Q 018523 305 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 342 (354)
Q Consensus 305 ~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~~~~~ 342 (354)
|||++++..|+++|+||+.||++||++|++.++.....
T Consensus 592 FAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 592 FAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred EeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 99999998899999999999999999999998866554
No 26
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.84 E-value=6.7e-19 Score=157.68 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=176.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHHHHcCCE
Q 018523 33 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGE 112 (354)
Q Consensus 33 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~ 112 (354)
+-+|++. .+..+..+.|..+..+-......+....+-.+|... . +....+.||.||| +.+.+++++.++++|++
T Consensus 207 ~~~~fes---k~~ka~l~tDavi~~~asv~~pgt~yvllh~vlg~~-d-~~~g~~~Yp~GG~-Gavs~aia~~~~~~Gae 280 (561)
T KOG4254|consen 207 LNDWFES---KDLKATLATDAVIGLLASVHTPGTGYVLLHHVLGEL-D-GHKGGWGYPRGGM-GAVSFAIAEGAKRAGAE 280 (561)
T ss_pred Hhhhhhc---cchhhhhhHHHHHHhhcccCCCCcHHHHHHHHHHhh-c-ccCCcccCCCCCh-hHHHHHHHHHHHhccce
Confidence 3445553 244455566776665533334444444443333222 1 2223478999998 79999999999999999
Q ss_pred EEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhhCCcchhhhHHHHHhhccCCc-cEEE----EEEE
Q 018523 113 VRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLPENWKEMAYFKRLEKLVGV-PVIN----IHIW 186 (354)
Q Consensus 113 i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ll~~~~~~~~~~~~~~~~~~~-~~~~----v~l~ 186 (354)
|.+++.|.+|..+ +|++++|.++||++++++.||+++.+ ..+.+|+|....|.+. .+.++.+. ++.+ .++.
T Consensus 281 I~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~ 357 (561)
T KOG4254|consen 281 IFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLC 357 (561)
T ss_pred eeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCCchh--hhhhcccccccccccCcceee
Confidence 9999999999996 58889999999999999999996655 5555899987666554 45555554 2332 3344
Q ss_pred ecccccc---ccCceeecc------------Ccc------cchh--cccccccccccCCCCcEEEEEe-cCCCCCCCCC-
Q 018523 187 FDRKLKN---TYDHLLFSR------------SSL------LSVY--ADMSLTCKEYYNPNQSMLELVF-APAEEWISCS- 241 (354)
Q Consensus 187 ~~~~~~~---~~~~~~~~~------------~~~------~~~~--~~~s~~~~~~~~~g~~~l~~~~-~~~~~~~~~~- 241 (354)
++..-.. .....+..+ ++. ..++ .-+|..++.++|+++|++.++. +....|.+..
T Consensus 358 ~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~ 437 (561)
T KOG4254|consen 358 LPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLK 437 (561)
T ss_pred cCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCccccccCCc
Confidence 3322111 111111110 000 0111 1134456778899999887442 2225565433
Q ss_pred ------hHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCC----------CccccCC-C--C-CCCCCCC-----
Q 018523 242 ------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR----------SVYKTIP-N--C-EPCRPLQ----- 296 (354)
Q Consensus 242 ------~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-g--~-~~~~~~~----- 296 (354)
+++..+++++.+++++|+++. .+ ....+.+|. +.+...+ + + .-.+|..
T Consensus 438 ~eye~~K~~~ae~~~~~ie~l~Pgfss------sv-~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y 510 (561)
T KOG4254|consen 438 GEYETKKEAFAERVFSVIEKLAPGFSS------SV-ESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNY 510 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCccc------eE-EEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccC
Confidence 467888899999999999874 23 233333332 3222211 1 1 1134544
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
++|+++||+||+.++++ +++.+|- |+.+|...+.+.+
T Consensus 511 ~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 511 STPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRK 547 (561)
T ss_pred CCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhh
Confidence 89999999999999997 6777765 8888877665543
No 27
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.81 E-value=1.6e-18 Score=154.62 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=202.6
Q ss_pred cccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHH---------------Hh-hc---------
Q 018523 27 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR---------------FL-QE--------- 81 (354)
Q Consensus 27 ~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~---------------~~-~~--------- 81 (354)
.-.++||.+|++|+ |++++.+++++|+++++|++|++++|+...+..+.. .+ ++
T Consensus 152 ~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~ 230 (491)
T KOG1276|consen 152 PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETAL 230 (491)
T ss_pred CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchh
Confidence 35789999999999 999999999999999999999999999988764411 11 00
Q ss_pred -----cCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CCe-EEEcCEEEEccChh
Q 018523 82 -----KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDGDAYVFATPVD 153 (354)
Q Consensus 82 -----~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~-~~~ad~VI~a~p~~ 153 (354)
.......-.+||+ +.|++++.+.|.+..+.|.++-++..+.....|++ .+.+. ++. ....+++..|+|..
T Consensus 231 ~~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~-~~tl~~~~~~~~~~~~~~~~t~~~~ 308 (491)
T KOG1276|consen 231 SAQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNW-SLTLVDHSGTQRVVVSYDAATLPAV 308 (491)
T ss_pred hhhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhcccccccccccccCCc-eeEeEcCCCceeeeccccccccchH
Confidence 1112233458898 89999999999888899999999999987654533 24443 443 34556677799999
Q ss_pred hHhhhCCcchhhhHHHHHhhccCCccEEEEEEEeccc-cc---cccCceeec--cC--cccchhcccccccccccCCCCc
Q 018523 154 ILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK-LK---NTYDHLLFS--RS--SLLSVYADMSLTCKEYYNPNQS 225 (354)
Q Consensus 154 ~l~~ll~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~-~~---~~~~~~~~~--~~--~~~~~~~~~s~~~~~~~~~g~~ 225 (354)
.++.+++.. .......+..++|.++.+|++.|.++ .. ++++.++-. .. ...++++|.. ..+...+.+
T Consensus 309 k~a~ll~~~--~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~-~Fp~~~~s~-- 383 (491)
T KOG1276|consen 309 KLAKLLRGL--QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSM-LFPDRSPSP-- 383 (491)
T ss_pred Hhhhhcccc--chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecc-cCCCCCCCc--
Confidence 999999874 22345567888999999999999875 22 355544431 12 2345544422 222222322
Q ss_pred EEE-EEe-cCCCCC--CCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCC-----C
Q 018523 226 MLE-LVF-APAEEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL-----Q 296 (354)
Q Consensus 226 ~l~-~~~-~~~~~~--~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~ 296 (354)
.++ +++ +....+ ...++|++++.+.++|+++++... ++....++-|+...|+|+.|+...... .
T Consensus 384 ~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~-------~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~ 456 (491)
T KOG1276|consen 384 KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN-------KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLT 456 (491)
T ss_pred eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC-------CcccccceehhhcccceecchHHHHHHHHHHHH
Confidence 333 222 222222 346899999999999999997654 355556667888999999987432111 1
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il 333 (354)
..+..+|+++|.|..+ .++..+|+||..+|.+++
T Consensus 457 ~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 457 DSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred hCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 2233589999999987 589999999999998764
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.3e-18 Score=157.48 Aligned_cols=298 Identities=21% Similarity=0.292 Sum_probs=185.9
Q ss_pred ccCCCHHHHHHHcCC------------ChHHHHHHHHHHHhh---hccC-CcccccHHHHHHHHHHHhhccCC-ceeeee
Q 018523 28 QDGLTVQEWMRKQGV------------PDRVTTEVFIAMSKA---LNFI-NPDELSMQCILIALNRFLQEKHG-SKMAFL 90 (354)
Q Consensus 28 ~d~~s~~~~l~~~g~------------~~~~~~~~~~~~~~~---~~~~-~~~~~sa~~~~~~~~~~~~~~~g-~~~~~~ 90 (354)
-+.-|+.+++.+. + .+.....+++.+... +.++ +.+++|...+..+- .-.| ....+.
T Consensus 145 ~~~~SvG~~ln~~-~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~-----~~~ge~~~~~~ 218 (498)
T KOG0685|consen 145 HDEGSVGEYLNSE-FWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYT-----ECPGEELLIWN 218 (498)
T ss_pred CccccHHHHHHHH-HHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcccee-----ecCchhhheec
Confidence 4678999999861 1 112233334433321 2222 34555555554321 1112 122334
Q ss_pred cCCCcccchHHHHHHHHH----cC--CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh----hCC
Q 018523 91 DGNPPERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLP 160 (354)
Q Consensus 91 ~Gg~~~~l~~~l~~~l~~----~g--~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~----ll~ 160 (354)
.-|+ .++.+.|++.+++ +| .+++++++|.+|..++.+.| .|++.||+.+.||+||||+++.+|++ ++.
T Consensus 219 ~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~ 296 (498)
T KOG0685|consen 219 KKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFV 296 (498)
T ss_pred hhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcC
Confidence 4454 5888888876653 23 57777899999999766778 49999999999999999999999987 433
Q ss_pred cchhhhHHHHHhhccCCccEEEEEEEeccccccc-cCce--eeccCc---ccc----hhcccccccccccCCCCcE-EEE
Q 018523 161 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-YDHL--LFSRSS---LLS----VYADMSLTCKEYYNPNQSM-LEL 229 (354)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~--~~~~~~---~~~----~~~~~s~~~~~~~~~g~~~-l~~ 229 (354)
+. .|....++|+++.++.+.|++|.|.+|+|+. ...+ ++.+.. +.. .+.++..-.+-... .++ +++
T Consensus 297 P~-LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~--~~vL~gW 373 (498)
T KOG0685|consen 297 PP-LPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWA--PNVLLGW 373 (498)
T ss_pred CC-CCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcc--hhhhhee
Confidence 32 3667888999999999999999999999963 3332 222222 110 01111100010011 244 445
Q ss_pred Eec-CCCCCCCCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeC--CCccccCC-CCC--------CCCCC-C
Q 018523 230 VFA-PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTP--RSVYKTIP-NCE--------PCRPL-Q 296 (354)
Q Consensus 230 ~~~-~~~~~~~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-g~~--------~~~~~-~ 296 (354)
+.+ .+.....+++|++.+.++..|++++++..-| ...+++...++.-| +|.|.|.. |.. ...|. .
T Consensus 374 iaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP--~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~ 451 (498)
T KOG0685|consen 374 IAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIP--KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTL 451 (498)
T ss_pred ccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCC--CchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccc
Confidence 544 3556678999999999999999999864311 11233444444333 35676543 321 01221 1
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
...-+.|.|||++++..+-.+++||++||+|.|+++++.+..
T Consensus 452 ~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 452 VTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred cCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 223468999999999877689999999999999999986643
No 29
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.74 E-value=1.7e-18 Score=145.81 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=148.9
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-eEEEcCEEEEccChhhHhhhCCcc--hhhhHHHHHhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPEN--WKEMAYFKRLE 173 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~~l~~ll~~~--~~~~~~~~~~~ 173 (354)
.|.+.|+. ..+|+++++|++|.+.+++ . .+.+++| +...+|.||+|+|.+++..||... ..|..+.+++.
T Consensus 109 alak~LAt-----dL~V~~~~rVt~v~~~~~~-W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a 181 (331)
T COG3380 109 ALAKFLAT-----DLTVVLETRVTEVARTDND-W-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALA 181 (331)
T ss_pred HHHHHHhc-----cchhhhhhhhhhheecCCe-e-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhc
Confidence 45554443 5599999999999996444 4 5888665 567999999999999999998642 24556788888
Q ss_pred ccCCccEEEEEEEeccccccccCceeeccCcccchhcccccccccccCCCCcEEEEEec--CCCCCCCCChHHHHHHHHH
Q 018523 174 KLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFA--PAEEWISCSDSEIIDATMK 251 (354)
Q Consensus 174 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~--~~~~~~~~~~ee~~~~~~~ 251 (354)
.+.|.+++.+.+.|..+...+..+.+..+.++.++-.+.|. +.+-|.+. ++.+..+ -++.+.+.++|+.+..+..
T Consensus 182 ~V~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK--~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~a 258 (331)
T COG3380 182 DVVYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASK--KGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRA 258 (331)
T ss_pred cceehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccC--CCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHH
Confidence 89999999999999987664444544455565544333222 22223333 3333333 2345567788888877777
Q ss_pred HHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCC-CCCCceEEeeccccCCCCCchhHHHHHHHHHHH
Q 018523 252 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR-SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQ 330 (354)
Q Consensus 252 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~ 330 (354)
......+..- .++...+.++|+++.+....+. +.+. .+-.+||+||||+++ +-+|||.+||..+|.
T Consensus 259 A~~~~~~~~~------~~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~ 325 (331)
T COG3380 259 AAQELDGDRL------PEPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG---GRVEGAVLSGLAAAD 325 (331)
T ss_pred hhhhccCCCC------CcchHHHhhccccccccccccC----CccccCCCCceeeecccccC---cchhHHHhccHHHHH
Confidence 7777776332 1355567788998876533322 1111 234689999999998 589999999999999
Q ss_pred HHHHHh
Q 018523 331 AIVQDY 336 (354)
Q Consensus 331 ~il~~~ 336 (354)
+|++.|
T Consensus 326 ~i~~~L 331 (331)
T COG3380 326 HILNGL 331 (331)
T ss_pred HHHhcC
Confidence 998754
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=2.3e-16 Score=149.62 Aligned_cols=234 Identities=25% Similarity=0.347 Sum_probs=161.2
Q ss_pred eecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh--h--CCcchh
Q 018523 89 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q--LPENWK 164 (354)
Q Consensus 89 ~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l--l~~~~~ 164 (354)
...+|+ ..++.+++. |..|+++++|.+|.+..++.+ .|++.++..+.+|+||+|+|..+++. + .|+ .
T Consensus 213 ~~~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~--L 283 (501)
T KOG0029|consen 213 LMKGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDDGAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPP--L 283 (501)
T ss_pred HhhCCc-cHHHhhcCC-----CcceeeceeeEEEEEecCCce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCC--C
Confidence 346676 567677664 889999999999999766653 35666666699999999999999987 3 233 3
Q ss_pred hhHHHHHhhccCCccEEEEEEEecccccc-ccCceeec-cC-cccc--hhcccccccccccCCCCcEEEEEec-CCCCCC
Q 018523 165 EMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYDHLLFS-RS-SLLS--VYADMSLTCKEYYNPNQSMLELVFA-PAEEWI 238 (354)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~-~~-~~~~--~~~~~s~~~~~~~~~g~~~l~~~~~-~~~~~~ 238 (354)
|....++|+++..+.+.|+.+.|++.+|. ..+.+... .. ...+ .+.+... . .....++..... .+..+.
T Consensus 284 p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~----~-~~~~~l~~~~~~~~a~~~~ 358 (501)
T KOG0029|consen 284 PRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLFTFYDCKP----V-AGHPVLMSVVVGEAAERVE 358 (501)
T ss_pred cHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchhhhhhcCc----c-CCCCeEEEEehhhhhHHHh
Confidence 55678889999999999999999999994 22222221 11 1111 2222211 1 111223333333 356677
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCC-----CccccCC-CCC-CCCCCCCCCCCc-eEEeeccc
Q 018523 239 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR-----SVYKTIP-NCE-PCRPLQRSPVEG-FYLAGDYT 310 (354)
Q Consensus 239 ~~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-g~~-~~~~~~~~~~~~-L~~aG~~~ 310 (354)
.+++++++..++..|+++|+... ...+++..+.+|.. +.|.+.+ +.. ...+.++.|+.+ +||||+++
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~-----~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t 433 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEE-----VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEAT 433 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCc-----CCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhh
Confidence 89999999999999999999322 12456666777643 3443322 221 111344667777 99999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhhHHH
Q 018523 311 KQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 341 (354)
Q Consensus 311 ~~~~~~~~~gAi~sG~~aa~~il~~~~~~~~ 341 (354)
...|+++|+||+.||.++|..|+..+....+
T Consensus 434 ~~~~~~tm~GA~~sG~~~a~~i~~~~~~~~~ 464 (501)
T KOG0029|consen 434 SRKYPGTMHGAYLSGLRAASDILDSLIEILR 464 (501)
T ss_pred cccCCCchHHHHHhhHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999985333
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=7e-16 Score=147.84 Aligned_cols=285 Identities=19% Similarity=0.223 Sum_probs=166.4
Q ss_pred ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHHH
Q 018523 28 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 107 (354)
Q Consensus 28 ~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~ 107 (354)
....++.+++... |.++.++.++........ .+|.+.++...+ +. .... ...+.||+||| +.|+++|++.++
T Consensus 164 ~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~--~~-~~~~--~~G~~~p~GG~-~al~~aL~~~~~ 235 (487)
T COG1233 164 FSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALYLL--LS-HLGL--SGGVFYPRGGM-GALVDALAELAR 235 (487)
T ss_pred HhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHHHH--HH-Hhcc--cCCeeeeeCCH-HHHHHHHHHHHH
Confidence 4567888888888 888877777766543333 667777622222 11 1111 22477999998 899999999999
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCcchhhhHHHHHhhccC-CccEEEEEEE
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV-GVPVINIHIW 186 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~v~l~ 186 (354)
++|++|+++++|++|..+ +|+.++++..+|+.+++|.||+++.+.....+.+.... .+...... ..+.+..++.
T Consensus 236 ~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~al~~~~g 310 (487)
T COG1233 236 EHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR----PRYRGSYLKSLSALSLYLG 310 (487)
T ss_pred HcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhhhhhh----hccccchhhhhHHHHhccC
Confidence 999999999999999995 55544677777767899999999988555555443211 00111111 1234445555
Q ss_pred ecccccc-ccCceeec-cC--ccc-----------chh-cccccccccccCCCCcEEEEEe--cCCCCCCCCChHHHHHH
Q 018523 187 FDRKLKN-TYDHLLFS-RS--SLL-----------SVY-ADMSLTCKEYYNPNQSMLELVF--APAEEWISCSDSEIIDA 248 (354)
Q Consensus 187 ~~~~~~~-~~~~~~~~-~~--~~~-----------~~~-~~~s~~~~~~~~~g~~~l~~~~--~~~~~~~~~~~ee~~~~ 248 (354)
++....+ .....++. +. .+. .++ ..+|..+|+.+|+|++.+...+ .+...+.+..++++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (487)
T COG1233 311 LKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLADA 390 (487)
T ss_pred CCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHHHHH
Confidence 5553111 11122221 10 000 011 1244567888999876222222 22122223344555555
Q ss_pred HHHHHHHhCCCCccccccccceeEEEEEEeCC----------Cc-cc--cCCCC-CCCCCCC-CCCCCceEEeeccccCC
Q 018523 249 TMKELAKLFPDEISADQSKAKIVKYHVVKTPR----------SV-YK--TIPNC-EPCRPLQ-RSPVEGFYLAGDYTKQK 313 (354)
Q Consensus 249 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~-~~--~~~g~-~~~~~~~-~~~~~~L~~aG~~~~~~ 313 (354)
...++++.|++.+ .++...+. +|. +. +. ....+ ...+|.. ++|++|||+||+++++|
T Consensus 391 -~~~~~~~~p~~~~------~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 391 -IDALEELAPGLRD------RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred -HHHHhhcCCCccc------ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 5678999998863 23333222 222 11 11 01111 2244443 58999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q 018523 314 YLASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 314 ~~~~~~gAi~sG~~aa~~il~~ 335 (354)
+++.++.-++..++..+...
T Consensus 463 --~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 463 --GGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred --CCcchhhhhHHHHHhhhccc
Confidence 78888876666666555443
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.28 E-value=1.4e-10 Score=109.19 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=100.9
Q ss_pred CCChHHHHHHhhhhhHHHhcccc----cccc--ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHH
Q 018523 1 MLTWPEKVKFAIGLLPAIIGGQA----YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA 74 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~~~~~~----~~~~--~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~ 74 (354)
++++.+|.++.+++... ...+. .+.. ++.+|+.+|++++++++...+ ++..++......+..+.++...+..
T Consensus 131 ll~l~eKr~l~kfl~~v-~~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~r 208 (443)
T PTZ00363 131 LMGFFEKNRCKNFLQYV-SNYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMR 208 (443)
T ss_pred CcchhhHHHHHHHHHHH-HhhccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHH
Confidence 47889999997765433 12111 2333 457999999999999888655 4444443321111123344444433
Q ss_pred HHHHhh--ccCC-ceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccC
Q 018523 75 LNRFLQ--EKHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 151 (354)
Q Consensus 75 ~~~~~~--~~~g-~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p 151 (354)
+..++. ...| ..+.||.||+ +.|++++++.++..|++++++++|++|..++++++.+|++.+|++++|+.||+...
T Consensus 209 i~~y~~S~~~~g~~p~~yp~gG~-g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 209 IKLYMDSLSRYGKSPFIYPLYGL-GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHhhccCCcceeeCCCH-HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 333321 1222 2367899997 79999999999999999999999999998656777789998999999999999543
No 33
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.21 E-value=2.9e-10 Score=99.66 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=112.2
Q ss_pred ccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHH-------hhccCCceeeeecCCCcc
Q 018523 24 YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-------LQEKHGSKMAFLDGNPPE 96 (354)
Q Consensus 24 ~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~-------~~~~~g~~~~~~~Gg~~~ 96 (354)
+.....++|+.+||++++|++.+.+.++-|+..++|.++..+++..-+...+..+ +.+++ .+..+.||. .
T Consensus 144 d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp--~wrtV~ggS-~ 220 (447)
T COG2907 144 DNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRP--TWRTVAGGS-R 220 (447)
T ss_pred hhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCC--ceeEcccch-H
Confidence 4555688999999999999999999999999999888877777665554443221 11121 244566773 5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCcchhhhHHHHHhhccC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV 176 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~~~~~~ 176 (354)
..+++|++.+ +++|+++++|.+|..-.+|.+ |+..+|++.++|+||.++.+.+...||++. .| +..+.+..+.
T Consensus 221 ~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~-sp-~e~qll~a~~ 293 (447)
T COG2907 221 AYVQRLAADI---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEP-SP-EERQLLGALR 293 (447)
T ss_pred HHHHHHhccc---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCC-CH-HHHHHHHhhh
Confidence 6666666444 689999999999999888843 666779999999999999999999998874 22 3445677888
Q ss_pred CccEEEEEE
Q 018523 177 GVPVINIHI 185 (354)
Q Consensus 177 ~~~~~~v~l 185 (354)
|.....|..
T Consensus 294 Ys~n~aVlh 302 (447)
T COG2907 294 YSANTAVLH 302 (447)
T ss_pred hhhceeEEe
Confidence 875544443
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.75 E-value=1.7e-07 Score=89.86 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=88.1
Q ss_pred ccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhc----cCCceeeeecCCCcccch
Q 018523 24 YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE----KHGSKMAFLDGNPPERLC 99 (354)
Q Consensus 24 ~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~----~~g~~~~~~~Gg~~~~l~ 99 (354)
..+++|+.|++||+++..| +.... .+++.++ +-....||..+.+++.+|+.+ .+...+.+.++...++|+
T Consensus 156 ~e~~Ld~~tI~d~f~~~Ff-~t~Fw----~~w~t~F-aF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV 229 (576)
T PRK13977 156 PEEKLDDKTIEDWFSPEFF-ETNFW----YYWRTMF-AFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLV 229 (576)
T ss_pred CHHHhCCcCHHHHHhhcCc-hhHHH----HHHHHHH-CCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHH
Confidence 3457999999999999755 33333 4444443 444789999999999877432 222234455555448999
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEec-CC--CCEEEEEEc-CC--e---EEEcCEEEEccCh
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELN-DD--GTVKNFLLT-NG--N---VIDGDAYVFATPV 152 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~-~~--g~v~~V~~~-~g--~---~~~ad~VI~a~p~ 152 (354)
.+|.+.|+++|++++++++|++|..+ ++ ++|++|.+. +| + ....|.||+|...
T Consensus 230 ~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 230 LPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence 99999999999999999999999984 23 567888775 33 2 2367999997755
No 35
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.45 E-value=1e-05 Score=75.76 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=95.9
Q ss_pred CCChHHHHHHhhhhhHHHhcccc----cccc--ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCc-ccccHHHHHH
Q 018523 1 MLTWPEKVKFAIGLLPAIIGGQA----YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINP-DELSMQCILI 73 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~~~~~~----~~~~--~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~sa~~~~~ 73 (354)
++|+.+|-++-++|... ...+. +++. ..++++.++++++++++...+ ++-.. -+++..+. -+.++...+.
T Consensus 131 ~lsl~eKR~lmkFl~~v-~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~-~i~ha-iaL~~~~~~~~~p~~~~l~ 207 (438)
T PF00996_consen 131 LLSLFEKRRLMKFLKFV-ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLID-FIGHA-IALSLDDSYLTEPAREGLE 207 (438)
T ss_dssp TS-HHHHHHHHHHHHHH-HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHH-HHHHH-TS-SSSSGGGGSBSHHHHH
T ss_pred CccHHHHHHHHHHHHHH-hhcccCCcchhhccccccccHHHHHHhcCCCHHHHH-HHHHh-hhhccCcccccccHHHHHH
Confidence 47899999997776533 22222 2333 357899999999999887555 43221 12321221 1336677777
Q ss_pred HHHHHhh--ccCC-ceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEc
Q 018523 74 ALNRFLQ--EKHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 149 (354)
Q Consensus 74 ~~~~~~~--~~~g-~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a 149 (354)
.++.++. .+.| ..+.||..|. +.|++++++.-.-.||...||++|.+|..+++|++.+|.. +|+++.++.||..
T Consensus 208 ri~~yl~SlgryG~sPfLyP~YG~-GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 208 RIKLYLSSLGRYGKSPFLYPLYGL-GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHCCCSSSSEEEETT-T-THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred HHHHHHHHHhccCCCCEEEEccCC-ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 7776653 2322 3578998886 6899999988777899999999999999977788877775 7899999999964
No 36
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.11 E-value=1.6e-05 Score=73.25 Aligned_cols=68 Identities=26% Similarity=0.415 Sum_probs=51.8
Q ss_pred eeeecCCC--cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHh
Q 018523 87 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 156 (354)
Q Consensus 87 ~~~~~Gg~--~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~ 156 (354)
+.++++|. ...+.+.|.+.+++.|++|+.+++|++|..+ ++.+++|.+.+|+ +++|+||+|+.++...
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEeccccccee
Confidence 34555551 1578899999888999999999999999995 5557679998886 9999999998876543
No 37
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.04 E-value=0.00034 Score=64.10 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=52.3
Q ss_pred eeeecCCC--cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHh
Q 018523 87 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 156 (354)
Q Consensus 87 ~~~~~Gg~--~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~ 156 (354)
+..+.+|. ...+...+.+.+++.|++++.+++|++|..+ ++.+.+|.+.+| +++||.||+|+.++.-.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 33455552 2577888888888899999999999999984 555666777666 78999999999886543
No 38
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.99 E-value=1.6e-05 Score=73.21 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=81.9
Q ss_pred cccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCceeeeecCCCcccchHHHHHHH
Q 018523 27 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 106 (354)
Q Consensus 27 ~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l 106 (354)
.+-..|.+|||++.|+++.+++.++.+.++..||.+ .++++...+-.|.. ..+ ..+-++|| +.+|++.|.
T Consensus 66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~----a~~-gl~sV~GG-N~qI~~~ll--- 135 (368)
T PF07156_consen 66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG----ATG-GLWSVEGG-NWQIFEGLL--- 135 (368)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee----ccC-CceEecCC-HHHHHHHHH---
Confidence 345678999999999999999999999999888776 35666555433221 112 23456666 367888877
Q ss_pred HHcCCEEEecceeeEE-EecCCCC-EEEEEEcC--C-eEEEcCEEEEccChhhHh
Q 018523 107 QSLGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDILK 156 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I-~~~~~g~-v~~V~~~~--g-~~~~ad~VI~a~p~~~l~ 156 (354)
++.|.++ ++++|++| ...+++. ...|+..+ + ..-.+|+||+|+|...-.
T Consensus 136 ~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 136 EASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred HHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 4678999 99999999 4434443 22355543 2 234579999999995444
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.84 E-value=0.0034 Score=59.27 Aligned_cols=197 Identities=13% Similarity=0.187 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH--hhhCCcchhhhHHHHHhhc
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL--KLQLPENWKEMAYFKRLEK 174 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l--~~ll~~~~~~~~~~~~~~~ 174 (354)
.+...+++.+++.|+++..+++|++|+.++++.+.+|++.+| ++.+++||+++..+.- .+++... .+ +.
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~-~~------~~- 254 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR-LP------IE- 254 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC-CC------cC-
Confidence 345556667778899999999999998644455656777777 6899998887665432 2222111 01 00
Q ss_pred cCCccEEEEEEEeccccccccCceeeccCcccchhcccccccccccC-CCCcEE-EEEecCCCCCCCCChHHHHHHHHHH
Q 018523 175 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYN-PNQSML-ELVFAPAEEWISCSDSEIIDATMKE 252 (354)
Q Consensus 175 ~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~g~~~l-~~~~~~~~~~~~~~~ee~~~~~~~~ 252 (354)
.+.. .+....+.......++..... .++. .| +++.++ +.............+.+..+.+++.
T Consensus 255 -~~~~----~~~~~~~~~~~~~~~~~~~~~--~~y~---------~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 255 -SHPL----QALVSEPLKPIIDTVVMSNAV--HFYV---------SQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred -cccc----eEEEecCCCCCcCCeEEeCCC--ceEE---------EEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 1111 111112211101111111100 0110 11 122232 2111101111122345667788999
Q ss_pred HHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCC-CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHH
Q 018523 253 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQ-RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 331 (354)
Q Consensus 253 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~ 331 (354)
+.+++|.+.. ..+. ..| .+.+..+|+. .|.+ ..|.+|+|++..+.+. ++.-|-..|+..|+.
T Consensus 319 ~~~~~P~l~~-----~~~~----~~w-~G~~~~t~D~---~PiIg~~~~~gl~~a~G~~g~----G~~~ap~~G~~la~l 381 (407)
T TIGR01373 319 ILEMFPILSR-----VRML----RSW-GGIVDVTPDG---SPIIGKTPLPNLYLNCGWGTG----GFKATPASGTVFAHT 381 (407)
T ss_pred HHHhCCCcCC-----CCeE----EEe-ccccccCCCC---CceeCCCCCCCeEEEeccCCc----chhhchHHHHHHHHH
Confidence 9999998742 1221 223 2333445543 2221 2235899998855443 465666679999998
Q ss_pred HHHH
Q 018523 332 IVQD 335 (354)
Q Consensus 332 il~~ 335 (354)
|+..
T Consensus 382 i~~~ 385 (407)
T TIGR01373 382 LARG 385 (407)
T ss_pred HhCC
Confidence 8753
No 40
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.73 E-value=0.0042 Score=58.81 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.+...|.+.+++.|++|+++++|++|+.+ ++.+.+|++.++ ++++|+||+|+..+.
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 56777888788889999999999999985 444545666544 789999999998764
No 41
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.66 E-value=0.0047 Score=55.03 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCEEEecceeeEEEec-CCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh
Q 018523 99 CLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 99 ~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 158 (354)
.+++...++++|+.++-+..|+.+... +++..+.|.+.+|..+.|+.+|+|+.++..+-|
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL 216 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLL 216 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhc
Confidence 455666677899999999999998842 334444688889988999999999999877554
No 42
>PRK10015 oxidoreductase; Provisional
Probab=97.63 E-value=0.0089 Score=56.86 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..|.+.+++.|++++.+++|+.|..+ ++++.+|.. ++.+++||.||.|.....
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 112 PWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcch
Confidence 34666677789999999999999874 455654554 456799999999887643
No 43
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00044 Score=62.64 Aligned_cols=145 Identities=15% Similarity=0.067 Sum_probs=95.8
Q ss_pred CCChHHHHHHhhhhhHHH--hcc-ccccccccC--CCHHHHHHHcCCChHHHHHHHHHHHhhhccC-CcccccHHHHHHH
Q 018523 1 MLTWPEKVKFAIGLLPAI--IGG-QAYVEAQDG--LTVQEWMRKQGVPDRVTTEVFIAMSKALNFI-NPDELSMQCILIA 74 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~~--~~~-~~~~~~~d~--~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~~ 74 (354)
++++.+|-++.+++.... ... .+.|..++- .|+++++..+++.++.++.. .-..+.+.. +.-+.++..++..
T Consensus 131 lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~--gh~~al~~dd~~ld~p~~~~~~r 208 (440)
T KOG1439|consen 131 LMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFI--GHAIALLCDDSYLDQPAKETLER 208 (440)
T ss_pred ccchhHHHHHHHHHHHHhhhhhhccccccccccccchHHHHHHHhcccccceeee--eeeeEEEecchhccCccHHHHHH
Confidence 478889999987765331 111 224666543 39999999998887765522 111122222 2345667677665
Q ss_pred HHHHhh---ccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEc
Q 018523 75 LNRFLQ---EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 149 (354)
Q Consensus 75 ~~~~~~---~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a 149 (354)
+..|.. ..+...+-||..|+ +.|++.+++.-.-.||+..+|.++.+|...++|++.+|... ++...++.||+.
T Consensus 209 i~~Y~~S~~~yg~~~ylyP~yGl-gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~-~~v~~~k~vi~d 284 (440)
T KOG1439|consen 209 ILLYVRSFARYGKSPYLYPLYGL-GELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSG-GEVAKCKKVICD 284 (440)
T ss_pred HHHHHHHHhhcCCCcceecccCc-chhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecC-CceeecceEEec
Confidence 554432 22233477999998 68999999876667999999999999998667887655543 346677888875
No 44
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.48 E-value=0.0019 Score=60.77 Aligned_cols=138 Identities=20% Similarity=0.288 Sum_probs=87.6
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhc
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE 81 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~ 81 (354)
||..+++.|.+.++ ++-+.+++.+++||+...-|... || .+++.+++-.| --|+..+-++|.+|+.+
T Consensus 122 Ls~k~r~eL~kL~l-------~~E~~L~~~~I~d~F~~~FF~Sn----FW-~~W~T~FAFqp-WhSa~E~rRyl~Rf~h~ 188 (500)
T PF06100_consen 122 LSEKDRMELIKLLL-------TPEEDLGDKRIEDWFSESFFESN----FW-YMWSTMFAFQP-WHSAVEFRRYLHRFIHE 188 (500)
T ss_pred CCHHHHHHHHHHhc-------CCHHHhCcccHHHhcchhhhcCc----hh-HhHHHhhccCc-chhHHHHHHHHHHHHHh
Confidence 67778888865555 22347899999999987545443 33 23333433222 35888888888877643
Q ss_pred cCCc----eeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecC--CCC-EEEEEE-cCCe--EE---EcCEEEE
Q 018523 82 KHGS----KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--DGT-VKNFLL-TNGN--VI---DGDAYVF 148 (354)
Q Consensus 82 ~~g~----~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--~g~-v~~V~~-~~g~--~~---~ad~VI~ 148 (354)
-.+. .+.+.+=..-++++.+|.+.|+++|+++++|++|+.|..+. +.+ ++++.+ .+|+ ++ .-|.|++
T Consensus 189 ~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~v 268 (500)
T PF06100_consen 189 IPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFV 268 (500)
T ss_pred cCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEE
Confidence 2221 11122222228999999999999999999999999998752 222 344444 3452 22 3578888
Q ss_pred ccCh
Q 018523 149 ATPV 152 (354)
Q Consensus 149 a~p~ 152 (354)
|...
T Consensus 269 T~GS 272 (500)
T PF06100_consen 269 TNGS 272 (500)
T ss_pred ECCc
Confidence 7654
No 45
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.47 E-value=0.0067 Score=56.72 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=50.0
Q ss_pred eeeecCCC--cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 87 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 87 ~~~~~Gg~--~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+.++.+|. ...+...|.+.+++ |++|+.+++|++|+.+ ++.+ +|++.+|..+.+|+||+|+.++.-
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEGW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCeE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 34555552 24677777777777 9999999999999985 4435 488878877899999999887653
No 46
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.36 E-value=0.00011 Score=67.95 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=80.8
Q ss_pred CCHHHHH---HHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccC----CceeeeecCCCcccchHHHH
Q 018523 31 LTVQEWM---RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKH----GSKMAFLDGNPPERLCLPIV 103 (354)
Q Consensus 31 ~s~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~----g~~~~~~~Gg~~~~l~~~l~ 103 (354)
.++++|. .+. +++.+++.++.|+....|+.+|+++++.++.+ +-..+...+ ...+++|++|+ ..+++.|.
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~R-vP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~ml 205 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGR-VPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKML 205 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEe-cceEecCCCCcccccccccccccH-HHHHHHHH
Confidence 5566666 777 99999999999999999999999999988752 111111111 12367899887 67888776
Q ss_pred HHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh
Q 018523 104 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 157 (354)
Q Consensus 104 ~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ 157 (354)
...+.+|++|+.+..+..+ +++ +.+.++ .+. +.||.|.|+..+..
T Consensus 206 ---~~~~i~v~l~~~~~~~~~~-~~~---~~~~~~-~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 206 ---DHPLIDVKLNCHINLLKDK-DSQ---LHFANK-AIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred ---hcCCCEEEeCCccceeecc-ccc---eeeccc-ccc-CcEEEecCchHHHh
Confidence 3447899999988878753 432 333333 333 88999999877744
No 47
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.34 E-value=0.0016 Score=59.43 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=51.9
Q ss_pred eeec-CCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 88 AFLD-GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 88 ~~~~-Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.||+ .. .+.|++.|.+.+++.|++|+++++|.+|.+++.+ . .|.+.+|++++||.+|+|+.-
T Consensus 103 ~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f-~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 103 MFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-F-RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred ecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-E-EEEcCCCCEEEccEEEEecCC
Confidence 4665 34 4789999999999999999999999999995433 3 488888889999999998873
No 48
>PRK06847 hypothetical protein; Provisional
Probab=97.24 E-value=0.047 Score=50.80 Aligned_cols=56 Identities=29% Similarity=0.362 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.|.+.|.+.+++.|++|+++++|++|+.++++ + .|++.+|+++++|.||.|.....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcCCCEEEcCEEEECcCCCc
Confidence 45667777777789999999999999975433 5 47788888899999999887643
No 49
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.23 E-value=0.027 Score=54.08 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+...|++.+++.|++|+.+++|++|+. +++ + .|++.+| +++||+||+|+..+.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~-~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-A-VVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-e-EEEeCCc-EEECCEEEEcccccc
Confidence 45678888888889999999999999985 333 4 4777666 689999999987653
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.23 E-value=0.039 Score=51.94 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKL 157 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ 157 (354)
+-+-|++..++.|++++.+++|+.+..++++.+. ++..++.+++|+.||.|..+ ..+.+
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~s~l~~ 156 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVNSALAR 156 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcchHHHH
Confidence 3445677777899999999999999997666543 44444478999999998866 34444
No 51
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.13 E-value=0.052 Score=51.25 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-----eEEEcCEEEEccChhhH
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDIL 155 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~l 155 (354)
..+...|.+.+++.|++|+.+++|++|+.+ ++.++ |.+.++ .++++|+||+|+.++..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence 345667777788899999999999999975 44342 444332 36899999999988653
No 52
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.11 E-value=0.046 Score=50.96 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.|.+.+.+.| ++|+.+++|++|..++ +.+ .|++.+|+++++|.||.+....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHV-ELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-Cee-EEEECCCCEEEeeEEEEeCCCC
Confidence 57788888777777 9999999999998854 445 4788888889999999876653
No 53
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.10 E-value=0.063 Score=50.12 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh-HhhhC
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
..|.+.|.+.+.+ .|++++.+++|++|..++++ + .|++.+|++++||.||.|.+.+. +++.+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 3577888887777 48999999999999875444 5 47777888899999999888753 44443
No 54
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.08 E-value=0.03 Score=52.54 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.|.+.|.+.+++.|++++.+++|++|+.+++ .+ .|++.+|+++++|.||.|.....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDAD-RV-RLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eE-EEEECCCCEEEeCEEEEecCCCc
Confidence 5677888888888999999999999998544 35 37777888899999999887643
No 55
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.05 E-value=0.061 Score=50.59 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQ 158 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~l 158 (354)
.+.+.|.+.+.+.|++|+.+++|++|+.+++ .+ .|++.+|+++++|.||.|.... .+++.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vI~AdG~~S~vr~~ 172 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDE-GV-TVTLSDGSVLEARLLVAADGARSKLREL 172 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EE-EEEECCCCEEEeCEEEEcCCCChHHHHH
Confidence 5778888888888999999999999987544 35 4777788889999999987763 34443
No 56
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.04 E-value=0.092 Score=46.79 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC-CeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~~ 153 (354)
.+.+.|.+.+++.|++++++++|+++..++++ + .+.+.+ +.++++|.||.+....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcc
Confidence 46677778778889999999999999885443 4 254443 4689999999988774
No 57
>PRK07045 putative monooxygenase; Reviewed
Probab=97.04 E-value=0.05 Score=50.99 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=46.3
Q ss_pred cchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhh
Q 018523 97 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKL 157 (354)
Q Consensus 97 ~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ 157 (354)
.|.+.|.+.+.+ .|++++++++|+.|+.++++.++.|++.+|+++++|.||.|-... .+++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 355666666653 578999999999999876665446888888899999999877764 4455
No 58
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.00 E-value=0.0023 Score=59.26 Aligned_cols=57 Identities=37% Similarity=0.558 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..++..|.+.|++.|++|+++++|..|+.. ++.+.+|.+.+|+++.+|+||+|+.-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcc
Confidence 356677788888999999999999999994 555667889899999999999998653
No 59
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.96 E-value=0.0097 Score=56.61 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=41.3
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
+-..|.+.+++.|++|+.+++|++|..+ ++++.+|. .+|++++||.||.|...+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCCH
Confidence 3345666667789999999999999875 45554444 4667899999999887643
No 60
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.96 E-value=0.0029 Score=59.20 Aligned_cols=60 Identities=28% Similarity=0.313 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeE-EEcCEEEEccChhhHh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDILK 156 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~-~~ad~VI~a~p~~~l~ 156 (354)
..+..++++.++++|++|++|++|+.|+.++|| +..+.+.+|++ ++|+.||.+.+..+..
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 467888899999999999999999999997776 43477778866 9999999998886654
No 61
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.94 E-value=0.047 Score=51.10 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.|.+.+.+.++..+.+++|++|..++++ + .|++.+|+++++|.||.|....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecCCC
Confidence 56777777777776656999999999875444 5 3788888889999999887764
No 62
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.89 E-value=0.24 Score=46.18 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..+...|.+.+++.|++++.+++|++|..+ ++.+ .|++.+| ++.+|.||+++..+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcc
Confidence 356677777777789999999999999975 4445 4777655 78999999988764
No 63
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.85 E-value=0.0027 Score=59.64 Aligned_cols=67 Identities=28% Similarity=0.434 Sum_probs=46.2
Q ss_pred eeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 87 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 87 ~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..||.-.-...+.+.|.+.+++.|++|+++++|++|+.++++ +..|.+++++++.||+||+|+.-..
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETTTEEEEESEEEE----SS
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccCcccccCCEEEEecCCCC
Confidence 457755434789999999999999999999999999986554 4468886778999999999976533
No 64
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.75 E-value=0.35 Score=44.92 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.+...+.+.+.+.|++++.+++|++|..+ ++.+ .|++++| ++.+|.||.|+..+.
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCC-EEEeeEEEEecCcch
Confidence 45555566666789999999999999985 3435 4777766 789999999998754
No 65
>PRK06185 hypothetical protein; Provisional
Probab=96.52 E-value=0.3 Score=46.00 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEE--cCCe-EEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~~-~l~~ll 159 (354)
.+.+.|.+.+.+. |++++.+++|+++..+ ++.+.+|.+ .+|+ ++++|.||.|.... .+++.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 4667777766654 7899999999999985 444544554 3563 78999999988764 344444
No 66
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.46 E-value=0.0055 Score=51.63 Aligned_cols=56 Identities=29% Similarity=0.380 Sum_probs=41.0
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.+.+-+.+.+++.+.+|+++++|++|.+++++ . .|++.++++++||+||+|+...
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w-~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-W-TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-E-EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-E-EEEEEecceeeeeeEEEeeecc
Confidence 356677777777889999999999999997666 4 4888888889999999998853
No 67
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.45 E-value=0.21 Score=46.77 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=49.1
Q ss_pred ccchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEc-CCeEEEcCEEEEccChh-hHhhhCC
Q 018523 96 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 160 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~~~~ad~VI~a~p~~-~l~~ll~ 160 (354)
..|.+.|.+.+.+.+ ++++.+++|+.|+.+++ .+. |++. +|++++||.||-+=..+ ..++.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 367788888887766 79999999999998644 464 7887 89999999999887764 4444444
No 68
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.44 E-value=0.0095 Score=55.79 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccChhhHhhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~~l~~l 158 (354)
.+|.++|.+.+++.|++++.+++|++|..+ +++++.|.+.++ .+++||+||+|+..+....|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence 588999999999999999999999999985 555766776665 47999999999887644444
No 69
>PRK09126 hypothetical protein; Provisional
Probab=96.36 E-value=0.23 Score=46.54 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=43.6
Q ss_pred chHHHHHHHH-HcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhC
Q 018523 98 LCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 98 l~~~l~~~l~-~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll 159 (354)
|.+.+.+.+. ..|++|+.+++|++++.+++ .+ .|++.+|+++++|.||.|.... .+++.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GA-QVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4455555554 36899999999999987544 35 4788888899999999988774 334433
No 70
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.35 E-value=0.3 Score=45.70 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh-HhhhC
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
.|-+.|.+.+++. |++++.+++|++|..++++ + .|++.+|+++++|.||.|..... +++.+
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~ 175 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANSQVRQMA 175 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCchhHHHc
Confidence 4556677766665 8999999999999875444 4 47777888899999999877644 44443
No 71
>PRK06184 hypothetical protein; Provisional
Probab=96.31 E-value=0.66 Score=45.13 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=44.4
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCeEEEcCEEEEccChhh-HhhhC
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
+-+.|.+.+.+.|++|+++++|++|+.++++ |+ |++ .+++++++|.||-|..... .++.+
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADG-VT-ARVAGPAGEETVRARYLVGADGGRSFVRKAL 174 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhC
Confidence 4556677777789999999999999986554 53 555 4557899999999887754 44444
No 72
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.30 E-value=0.015 Score=55.40 Aligned_cols=57 Identities=26% Similarity=0.277 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecC-CCCEEEEEEcC-CeEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~v~~V~~~~-g~~~~ad~VI~a~p~ 152 (354)
..+.+.|.+.+++.|++|+++++|++|..++ ++++++|...+ +.++.++.||+|+.-
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 5789999999999999999999999998753 56777776643 357899999998873
No 73
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.047 Score=50.02 Aligned_cols=143 Identities=18% Similarity=0.167 Sum_probs=92.8
Q ss_pred CChHHHHHHhhhhhHHH-hcccc---ccccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHH
Q 018523 2 LTWPEKVKFAIGLLPAI-IGGQA---YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNR 77 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~-~~~~~---~~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~ 77 (354)
|++.+|--+-+++..-. ...++ ...++.+.++.|||+..++++. ++.++- .++-..+.++.++...+...++
T Consensus 190 LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~-lqs~vl---~aIaM~~~~~~tt~eGm~at~~ 265 (547)
T KOG4405|consen 190 LTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPK-LQSIVL---HAIAMLSESQLTTIEGMDATKN 265 (547)
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChh-hHHHHH---HHHHhcCcccccHHHHHHHHHH
Confidence 56777777666554221 11122 3455678899999999989887 554532 2222256667888888777666
Q ss_pred Hhh--ccCC-ceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCC-CCEEEEEEcCCeEEEcCEEEEc
Q 018523 78 FLQ--EKHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD-GTVKNFLLTNGNVIDGDAYVFA 149 (354)
Q Consensus 78 ~~~--~~~g-~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~-g~v~~V~~~~g~~~~ad~VI~a 149 (354)
|+. ++.| ..+.||--|. +.|++.+.+...-.|+---++++|+.|..+.+ .+++-+....|+.+.++++|++
T Consensus 266 fl~slGrfgntpfLfPlYGq-GELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 266 FLTSLGRFGNTPFLFPLYGQ-GELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred HHHHhhccCCCcceeeccCC-CcchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeec
Confidence 654 2333 3477887675 68999999887778999999999999998532 2221112234666666666654
No 74
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.15 E-value=0.46 Score=44.39 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.+.+.|.+.+++.| ++++ +++|++|..++++ + .|++.+|+++++|.||.+.... .+++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 57778888888777 8888 9999999875443 5 4788788889999999987764 344443
No 75
>PRK08244 hypothetical protein; Provisional
Probab=96.15 E-value=0.87 Score=44.21 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CC-eEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG-NVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g-~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.+-+.|.+.+++.|++|+.+++|++|+.++++ + .|++. +| +++++|.||-|-... .+++.+
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-V-EVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-E-EEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 34455566667789999999999999885444 5 25443 45 478999999887663 444444
No 76
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.12 E-value=0.26 Score=49.76 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=49.3
Q ss_pred eeeecCCC--cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 87 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 87 ~~~~~Gg~--~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+.++++|+ ...+...+.+.+++ |++|+.+++|++|..++ +.++ |.+.+|..+++|.||+|...+..
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 44666653 13567777777777 89999999999999854 4353 77777777789999999887653
No 77
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.08 E-value=0.55 Score=44.26 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=45.1
Q ss_pred cchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhhC
Q 018523 97 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ll 159 (354)
.|.+.|.+.+.+ .|++|+.+++|++|+.++++ + .|++.+|+++++|.||.|-.. +.+++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 355566666655 36899999999999875444 5 488888989999999998876 4444443
No 78
>PRK07588 hypothetical protein; Provisional
Probab=95.91 E-value=0.5 Score=44.27 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.|.+.|.+.+. .|++|+++++|++|+.++++ + .|++.+|+++++|.||-|-....
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCc
Confidence 35555555443 37899999999999985443 6 38888898899999999877633
No 79
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=95.89 E-value=1.5 Score=40.92 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..|.+.+.+.+.+.|++++ +++|+.+..++++.+ .|++.+|++++|+.||.|.+...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALS-TVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCcee-EEEeCCCCEEEeCEEEECCCCch
Confidence 3567778877777888885 668999887523333 47787888899999999998865
No 80
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.89 E-value=0.92 Score=42.44 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=40.7
Q ss_pred chHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 98 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
|-..|.+.+.+ .|++++.+++|++|..++++ + .|++.+|.++++|.||.|...+
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCC
Confidence 44556655555 47899999999999875443 5 3777788889999999987764
No 81
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.87 E-value=0.7 Score=43.60 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcC-C--eEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.+.+.|.+.+.+. |++++++++|++|+.++++ + .|++.+ + .+++||.||.|-... .+++.+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~ 187 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVAADGARSPIRQAA 187 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEEeCCCCchhHHHh
Confidence 4566676666664 6899999999999875444 4 366653 3 368999999887663 333433
No 82
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.77 E-value=1 Score=41.90 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=48.2
Q ss_pred eeeecCCCc--ccchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 87 MAFLDGNPP--ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 87 ~~~~~Gg~~--~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+.++.++.. ..+...+++.+++.| ..+..+++|+.+..+ . .+..|.+.+|. +.||+||+++..+.-
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 334554431 357788888888889 566779999999984 3 34468887775 999999999887544
No 83
>PLN02463 lycopene beta cyclase
Probab=95.71 E-value=2 Score=41.04 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.|-+.|.+.+.+.|++++ +++|++|+.++++ + .|++++|++++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~-~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESK-S-LVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-E-EEEECCCCEEEcCEEEECcCCC
Confidence 455677777777889986 6799999985443 4 4888888899999999998764
No 84
>PRK08013 oxidoreductase; Provisional
Probab=95.69 E-value=1.3 Score=41.71 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.|-+.|.+.+++. |++|+.+++|++|+.++++ + .|++.+|+++++|.||-|-..+ .+++.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 4556677666664 7899999999999876544 5 4777889899999999887764 444443
No 85
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.68 E-value=1.5 Score=41.04 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=42.1
Q ss_pred chHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 98 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 98 l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
|-..|.+.+.+ .|++|+.+++|++|+.++++ + .|++.+|+++++|.||.|-.....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEecCCCch
Confidence 34455555554 46899999999999986554 5 488888989999999998777443
No 86
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.65 E-value=0.039 Score=51.13 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=49.5
Q ss_pred eeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-eEEEcCEEEEccChhh
Q 018523 87 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 154 (354)
Q Consensus 87 ~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~~ 154 (354)
..||.-..+..++++|...+++.|++|+++++|++|. +++ . .|.+.++ ++++||+||+|+.-..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~-~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-L-RFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-E-EEEECCCceEEecCEEEEcCCCcc
Confidence 4577544458999999999999999999999999993 233 4 4666433 5689999999887643
No 87
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.61 E-value=1.6 Score=42.83 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=41.9
Q ss_pred chHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEc--CC--eEEEcCEEEEccChh-hHhhhC
Q 018523 98 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 98 l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~~-~l~~ll 159 (354)
+-+.|.+.+.+. |++|+.+++|++|+.++++ | .|++. +| +++++|.||-+-... .+++.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 334455555553 8999999999999986555 5 36664 46 478999999877764 444544
No 88
>PRK06996 hypothetical protein; Provisional
Probab=95.59 E-value=1.3 Score=41.69 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC---eEEEcCEEEEccCh--hhHhhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQ 158 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~--~~l~~l 158 (354)
.|-+.|.+.+++.|++++.+++|++|+.++++ | .|++.+| +++++|.||-|-.. ...++.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~ 180 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQAEGGLFHDQKAD 180 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEECCCCCchHHHHH
Confidence 56778888888889999999999999876555 5 3666644 58999999998653 444444
No 89
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.52 E-value=0.048 Score=52.68 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHH----cC--CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHh
Q 018523 96 ERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 156 (354)
Q Consensus 96 ~~l~~~l~~~l~~----~g--~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~ 156 (354)
..+...+.+.+++ .| ++|+++++|++|..++++ +..|++.+| +++||.||+++..+...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~-~~~V~T~~G-~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS-LYKIHTNRG-EIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC-eEEEEECCC-EEEeCEEEECcChhHHH
Confidence 4678888888888 77 679999999999985344 335777766 79999999999886653
No 90
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.46 E-value=0.041 Score=38.79 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG 138 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g 138 (354)
..+...+.+.+++.|+++++++.|++|..++++ ++ |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 456667778888899999999999999998777 76 888876
No 91
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.29 E-value=0.051 Score=51.45 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 154 (354)
..++..|.+.+++.|++|+++++|+++..+ +++|++|... +|+ ++.|++||+|+.-..
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 468899999999999999999999999995 6789888876 354 578999999775533
No 92
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.26 E-value=0.057 Score=53.09 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=48.5
Q ss_pred eeeecCCC-cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CC--eEEEcCEEEEccChhh
Q 018523 87 MAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 154 (354)
Q Consensus 87 ~~~~~Gg~-~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~ 154 (354)
+.+++|-. +.++..+++....++|++|+++++|++|..+ ++++++|++. +| .+++||.||.|+.++.
T Consensus 139 ~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 139 VKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred EEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 44555332 1356666777777899999999999999984 5556667653 23 3689999999998864
No 93
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.16 E-value=0.075 Score=51.33 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=48.3
Q ss_pred eeeecCCC--cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCC--eEEEcCEEEEccChhhH
Q 018523 87 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDIL 155 (354)
Q Consensus 87 ~~~~~Gg~--~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~~~l 155 (354)
...+.+|. ...+..+|.+.+++.|++|+++++|++|+.++++.+ .|++ .+| .+++||+||+++..+..
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 34455542 256788888888888999999999999998544434 2432 234 36899999998887553
No 94
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.12 E-value=0.07 Score=50.13 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+.+.|.+.+++.|++|+++++|++|..++ +.+ .|.+.+| ++.+|.||+|...+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 4677888888888999999999999998753 335 4777666 799999999988754
No 95
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.11 E-value=0.071 Score=52.82 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC-Ce--EEEcC-EEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad-~VI~a~p~ 152 (354)
..++..|.+.+++.|++|+++++|++|..+++|+|++|.... |+ .+.++ .||+|+.-
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 467888888888889999999999999987678898887643 43 46786 68887654
No 96
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=95.08 E-value=0.082 Score=51.20 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChhhH
Q 018523 96 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDIL 155 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~~l 155 (354)
..+.++|.+.+++.| ++|+++++|++|+.++++.+ .|++ .+|+ +++|++||++...+..
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 468888888888877 69999999999998656544 2443 2353 6899999998888654
No 97
>PRK07121 hypothetical protein; Validated
Probab=95.07 E-value=0.079 Score=51.40 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC-Ce--EEEc-CEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~~ 153 (354)
..+.+.|.+.+++.|++|+++++|++|..+++|+|++|...+ ++ ++.+ +.||+|+...
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 468889998888899999999999999986567788887643 32 5788 9999988753
No 98
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.06 E-value=0.066 Score=52.30 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=49.3
Q ss_pred eeeecCCC-cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CC--eEEEcCEEEEccChhhH
Q 018523 87 MAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDIL 155 (354)
Q Consensus 87 ~~~~~Gg~-~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~l 155 (354)
+.+++|-. +..+...+++...++|++|+++++|++|..+ ++++.+|++. +| .+++|+.||.|+.++.-
T Consensus 118 ~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 118 VKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 44554322 2466777777788899999999999999984 4556566653 34 36899999999987643
No 99
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.93 E-value=1.7 Score=41.43 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHcC---CEEEecceeeEEEec-----C-CCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----D-DGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g---~~i~~~~~V~~I~~~-----~-~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.|.+.|.+.+++.+ ++++.+++|++|+.+ + +..+ .|++.+|++++||.||-|-... .+++.+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 45667777777664 799999999999752 1 2235 4888889999999999876664 444443
No 100
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.85 E-value=0.078 Score=52.27 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=46.1
Q ss_pred ecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-CCe--EEEc-CEEEEccCh
Q 018523 90 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPV 152 (354)
Q Consensus 90 ~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~--~~~a-d~VI~a~p~ 152 (354)
..+| ..|+.+|.+.+++.|++|+++++|+++..+ +|+|++|... +|+ .+.+ +.||+|+.-
T Consensus 213 ~~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 213 AAGG--QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred cCCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 3455 589999999998999999999999999874 6788888654 343 3556 579887644
No 101
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=94.84 E-value=0.68 Score=42.26 Aligned_cols=63 Identities=30% Similarity=0.371 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEE-EEEEc-CC--eEEEcCEEEEccChh-hHhhhCC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVK-NFLLT-NG--NVIDGDAYVFATPVD-ILKLQLP 160 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~-~V~~~-~g--~~~~ad~VI~a~p~~-~l~~ll~ 160 (354)
.|-+.|.+.+++.|++|+.+++|+.+..++++ ++ .+... +| ++++||.||-|-..+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 46667777777889999999999999986554 42 12222 34 368999999987664 4444443
No 102
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.83 E-value=0.097 Score=49.96 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CCe--EEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~ 152 (354)
.+.+.|.+.+++.|++|+++++|++|..+++++|++|++. +++ .+.++.||+|+..
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 5788888888889999999999999998656777777664 343 3678999998765
No 103
>PRK06116 glutathione reductase; Validated
Probab=94.76 E-value=0.098 Score=50.12 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|+.++++.+ .|++.+|+++.+|.||+++..
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCC
Confidence 4556777788889999999999999987545534 477778888999999998765
No 104
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.76 E-value=0.12 Score=45.59 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC-----------CeEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-----------g~~~~ad~VI~a~p~ 152 (354)
..+...|.+...+.|++|+++++|++|..++++++.+|.+.+ ..+++|+.||.|+..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 467788888888899999999999999875554676776532 247899999998764
No 105
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.75 E-value=3.7 Score=38.48 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE-cCCe--EEEcCEEEEccCh-hhHhhhCC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPV-DILKLQLP 160 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~-~~l~~ll~ 160 (354)
.+.+.|.+...+.|++++++++|++|+..++..+ .|++ .+|+ ++++|.||-|-.. ..+++.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 4556676666678999999999999986222224 3666 3664 6899999987766 44445554
No 106
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.69 E-value=0.12 Score=51.61 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecC-CCCEEEEEEc---CCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 154 (354)
.++...+++..++.|++|+.+++|++|..++ ++++++|++. +|+ ++.+|.||+|+.++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4677788888888999999999999998754 4566666652 343 579999999998864
No 107
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.69 E-value=0.12 Score=49.86 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CC--eEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 152 (354)
..+...|.+.+++.|++|+++++|++|..+ +++|++|++. +| ..+.++.||+|+..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 478899998888999999999999999984 6678777763 23 36789999998864
No 108
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.60 E-value=0.075 Score=49.57 Aligned_cols=52 Identities=33% Similarity=0.478 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCe-EEEcCEEEEccCh
Q 018523 95 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPV 152 (354)
Q Consensus 95 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~-~~~ad~VI~a~p~ 152 (354)
+..+.+...+.|++.|++|+++++|++|.. ++ |++++|+ ++.++.||.|+..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCC
Confidence 356777777888899999999999999996 44 6777777 4999999998765
No 109
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.55 E-value=0.13 Score=48.60 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 152 (354)
.+.+.|.+.+++.|++|+++++|+++..+ ++.++.+...+| ..+++|.||+|+..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 67888888898899999999999999975 445644444445 35899999998765
No 110
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.51 E-value=0.16 Score=50.15 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~~ 154 (354)
..|...|.+.+.+.|++|+.+++++++..+++|+|.||.. .+|+ .+.|++||+|+.-..
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4688899888888899999999999999855788888875 3454 578999999876533
No 111
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.41 E-value=4.3 Score=37.83 Aligned_cols=55 Identities=33% Similarity=0.433 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..|-+.+.+.++ .++.+++++.|++|+.++++ + .|++.+|++++|+.||-+.++.
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~-~-~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGDG-V-LVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCce-E-EEEECCCCEEEeeEEEECCCcc
Confidence 356677777776 67789999999999986443 3 3788899999999999998754
No 112
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.18 E-value=0.12 Score=51.15 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CCe-EEEc-CEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~-~~~a-d~VI~a~p~~~ 154 (354)
..|+..|.+.+++.|++|+++++|++|..+ +++|++|.+. ++. ++.+ +.||+++....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 468889999888999999999999999875 6777777653 332 5788 99999876643
No 113
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.16 E-value=4.5 Score=37.65 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.|-+.|.+.+++.+ .+++.+++|++|..++++ + .|.+.++ ++++|.||-|-... .+++.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCCchhHHhc
Confidence 56777777777665 789999999999875444 5 3777666 89999999877664 444443
No 114
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.15 E-value=0.19 Score=47.25 Aligned_cols=62 Identities=26% Similarity=0.293 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEc---CC--eEEEcCEEEEccChhhHhhh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~l~~l 158 (354)
+.|.+.|.+.+++. |.+++++++|+.|.+.++|.. .|.+. +| .+++|+.|++.....+|.-+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LL 248 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGALPLL 248 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhHHHH
Confidence 68899999988876 899999999999999888844 25442 23 57899999998877666543
No 115
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=94.15 E-value=0.19 Score=47.40 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+.+.+.+.+++.|++|+++++|++|..+ ++.+ .|++ +++++.+|.||+|+....
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKD-DNGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 578889999898899999999999999874 3434 4666 566889999999998643
No 116
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.07 E-value=0.2 Score=49.85 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..|...|.+.+.+.|++|+++++|+++..+++|+|.+|.. .+|+ .+.|++||+|+.-.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4688888888888899999999999998854577888875 3554 57899999987653
No 117
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.03 E-value=0.23 Score=49.05 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..|...|.+.+.+.|++|..+++|+++..+ +|+|.||.. .+|+ .+.|++||+|+.-.
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 578899998888889999999999999974 778888765 2454 57899999987653
No 118
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.98 E-value=0.19 Score=40.54 Aligned_cols=41 Identities=37% Similarity=0.501 Sum_probs=31.5
Q ss_pred CCEEE-ecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 110 GGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 110 g~~i~-~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
|.+|. ...+|+.|...+++. .|.+.+|..+.+|+||+|+..
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 44443 567999999976663 478889999999999998753
No 119
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.97 E-value=0.14 Score=47.99 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=50.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+.+.+...+++.|+++++++.+.++..+++|++..|.+.+|.++.+|.||+-+...-
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 45667777788889999999999999999888988889999999999999999766533
No 120
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.92 E-value=0.18 Score=49.10 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CC--eEEEcCEEEEccC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATP 151 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p 151 (354)
.+.+.|.+.+++.|++|+++++|++|..+ +++|++|.+. +| .++.++.||+++.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 57888988888899999999999999874 6677777653 33 3588999999886
No 121
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.83 E-value=0.17 Score=50.08 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC-Ce--EEEc-CEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~ 152 (354)
..|.+.|.+.+++.|++|+++++|+++..+ +++|++|.+.+ |+ ++.+ +.||+|+..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 468899999999999999999999999874 67788887654 33 4676 689987755
No 122
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.80 E-value=0.25 Score=45.89 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+...+.+.|++. +.+| ...+|++|.. ++++|.+|.+.+|+.+.+|.||+|+.+
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 3445556666664 4566 5789999998 467899999999999999999998877
No 123
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.76 E-value=0.27 Score=48.75 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..|...|.+.+.+.|++|.+++.|+++..+++|+|.+|.. .+|+ .+.|++||+|+.-.
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 4688888887777899999999999999855678888875 2453 57899999987653
No 124
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.51 Score=42.94 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=85.0
Q ss_pred CCChHHHHHHhhhhhHH--Hhccccccccc-cCCCHHHHHH-HcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHH
Q 018523 1 MLTWPEKVKFAIGLLPA--IIGGQAYVEAQ-DGLTVQEWMR-KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALN 76 (354)
Q Consensus 1 ~ls~~~k~~~~~~~~~~--~~~~~~~~~~~-d~~s~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~ 76 (354)
+||+.+|-++.+++-.. ..+....+.++ .+.++.+++. .+|++.+..+.+.-.++.. .+ -+.++..++..+.
T Consensus 132 ~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~---ld-l~~p~re~~erIl 207 (434)
T COG5044 132 LLSLFEKRRVMRFLKWVSNYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS---LD-LDIPAREALERIL 207 (434)
T ss_pred CcchhhHHHHHHHHHHHHhHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh---cc-ccCCchHHHHHHH
Confidence 47899999887766421 21211135554 3344555554 4667666444332222221 12 4667777776655
Q ss_pred HHhhc--cCC-ceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEc
Q 018523 77 RFLQE--KHG-SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 149 (354)
Q Consensus 77 ~~~~~--~~g-~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a 149 (354)
.|++. ..| +.+.||+-|. +.|.+.+++.-.-.|++..+|+++.+|... +. |.+|.. ++.+..|..||..
T Consensus 208 ~Y~~Sf~~yg~~pyLyp~YGl-~El~QGFaRssav~GgtymLn~~i~ein~t-k~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 208 RYMRSFGDYGKSPYLYPRYGL-GELSQGFARSSAVYGGTYMLNQAIDEINET-KD-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred HHHHhhcccCCCcceeeccCc-hhhhHHHHHhhhccCceeecCcchhhhccc-cc-eeeeec-CcceeecCcccCC
Confidence 55432 222 3477887675 689999998766689999999999999874 22 433332 3457778888764
No 125
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.73 E-value=0.18 Score=49.70 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-CCe--EEEcC-EEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 152 (354)
..|+..|.+.+++.|++|+++++|++|..+ +++|++|.+. +|+ .+.++ .||+|+.-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 478899999888999999999999999985 6778888764 343 46784 78887654
No 126
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=93.69 E-value=7.8 Score=38.18 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=41.0
Q ss_pred chHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEE--cCCe-EEEcCEEEEccChh-hHhhhCC
Q 018523 98 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVD-ILKLQLP 160 (354)
Q Consensus 98 l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~~-~l~~ll~ 160 (354)
+-..|.+.+.+. |++|+++++|++|+.++++ ++ +++ .+|. ++++|.||.+.... .+++.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDG-VT-LTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 334555556554 6899999999999986554 42 443 3453 68999999988764 4445543
No 127
>PRK12839 hypothetical protein; Provisional
Probab=93.61 E-value=0.25 Score=48.81 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CCe-EE-EcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VI-DGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~-~~-~ad~VI~a~p~ 152 (354)
..|+..|.+.+++.|++|+++++|++|..+++|+|++|.+. +|+ .+ .++.||+|+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 46888898888889999999999999987556788888753 343 33 34889987754
No 128
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.44 E-value=0.37 Score=42.28 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCC-CEEEEEEcC-----------CeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTN-----------GNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g-~v~~V~~~~-----------g~~~~ad~VI~a~p~ 152 (354)
.+.+.|.+...+.|++|+.++.|++|..++++ ++.+|.++. ..+++|+.||.|++.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 57788888888899999999999999885443 577777642 236889999998774
No 129
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.44 E-value=0.34 Score=48.21 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHH----cCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~----~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 152 (354)
..+...|.+.+++ .|++|+++++|+++..+++|+|++|... +|+ .+.|+.||+|+.-
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4677777666554 3799999999999987656678888764 343 5789999998855
No 130
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.43 E-value=0.32 Score=47.05 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEE---EcCCe--EEEcCEEEEccChhhH
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDIL 155 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~---~~~g~--~~~ad~VI~a~p~~~l 155 (354)
..|.++|.+.+.+ .|++|+++++|+.|..++++.++ |+ +.+|+ +++||.||+++..+..
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 4677888887754 58999999999999975344342 43 33442 6899999999888764
No 131
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.34 E-value=0.27 Score=46.29 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhhCC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLP 160 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ll~ 160 (354)
.+.+.|.+.+++.|++|+.+++|++|+.++++ + .|++.+|+++++|.||.|-.. ..+++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 45667777777789999999999999986554 5 377888888999999987776 44445543
No 132
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.28 E-value=0.38 Score=45.86 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEE-cCCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~ 152 (354)
..+.+.|.+.+++ .|++|+++++|++|..+ +++|.+|.. .+++ ++.|+.||+|+.-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4678888877765 58999999999999874 566767553 3453 5789999998765
No 133
>PRK06834 hypothetical protein; Provisional
Probab=93.19 E-value=0.28 Score=47.55 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh-HhhhC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
.+-+.|.+.+++.|++|+.+++|++|+.++++ + .|++.+|+++++|.||.+..... +++.+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 45566777777889999999999999986444 5 37777788899999998876643 33443
No 134
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.18 E-value=0.3 Score=50.49 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=43.2
Q ss_pred hHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 99 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 99 ~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.|++.|++|++++.|++|..++++.+..|.+.+|+++.+|.||++++.
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 345667788899999999999999864333344578888999999999998875
No 135
>PRK07190 hypothetical protein; Provisional
Probab=93.09 E-value=0.37 Score=46.66 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=45.0
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh-HhhhC
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
+-..|.+.+++.|++|+.+++|++|+.++++ ++ |++.+|++++|+.||.|..... +++.+
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~-v~~~~g~~v~a~~vVgADG~~S~vR~~l 171 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CL-TTLSNGERIQSRYVIGADGSRSFVRNHF 171 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eE-EEECCCcEEEeCEEEECCCCCHHHHHHc
Confidence 4445556677889999999999999986555 53 6667788899999999887744 44443
No 136
>PLN02697 lycopene epsilon cyclase
Probab=93.07 E-value=9.5 Score=37.37 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.|.+.|.+.+.+.|+++ ++++|++|..++++ +..+.+.+|++++|+.||.|.....
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 44566777777788998 78899999975454 4224566788899999999988866
No 137
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.98 E-value=0.33 Score=48.07 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC--Ce-EEEcC-EEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g~-~~~ad-~VI~a~p~~ 153 (354)
..|.+.|.+.+++.|++|+++++|++|..+ +++|++|.+.+ ++ .+.++ .||+|+...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 468888988888999999999999999985 67787887654 32 46775 788877653
No 138
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.94 E-value=0.3 Score=45.55 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
+.+.+.+.+++.|++++++++|++|..+ ++.+ .|.+.+|+++.+|.||+++..
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcCCcEEECCEEEECcCC
Confidence 4455667788899999999999999874 3324 477888889999999999765
No 139
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.87 E-value=0.45 Score=47.30 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 153 (354)
..|.+.|.+...+.|++|+.+++|+++..+++|+|.+|.+. +|+ .+.++.||+|+.-.
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 46888888877788999999999999997556778788652 453 57899999987653
No 140
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.85 E-value=0.38 Score=46.55 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
..+.+.+.+.|++.|.++++++.|++|..++++.+ .|++.+|+++.+|.||+++..
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSK-HVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceE-EEEEcCCCEEEcCEEEEeeCC
Confidence 45567778888889999999999999987544433 467767888999999998764
No 141
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.82 E-value=0.35 Score=47.54 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..+.+.|.+.+.+.|++|+++++|+++..+++++|++|.. .+|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4678888888878899999999999998754444777654 3453 57899999987653
No 142
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.80 E-value=0.24 Score=47.75 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=51.3
Q ss_pred eeeecCCC-cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC---Ce--EEEcCEEEEccChhhHh
Q 018523 87 MAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDILK 156 (354)
Q Consensus 87 ~~~~~Gg~-~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~l~ 156 (354)
+.|+++-. ..+|...++....++|++|++.++|+++..+ ++ +++|.+.| |+ +++|+.||.|+.+++-.
T Consensus 154 ~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 154 FRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred EEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 45665442 1356667777777899999999999999984 55 77888765 32 57999999999887654
No 143
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.79 E-value=0.32 Score=47.43 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=46.2
Q ss_pred eeeecCCC-cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC---Ce--EEEcCEEEEccChhh
Q 018523 87 MAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 87 ~~~~~Gg~-~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~ 154 (354)
+.|.+|-. ..++...++....+.|++++++++|++|..+ ++.+ +|++.+ |+ +++++.||.|+.++.
T Consensus 145 ~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 145 FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NGLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 34445422 1355566666677889999999999999874 4434 466543 43 689999999998855
No 144
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.76 E-value=0.4 Score=45.93 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-eEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.|++.|.++++++.|++|..+.++.+ .|++.+| +++.+|.||+++...
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 4556677778889999999999999987434434 4677677 578999999988763
No 145
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.73 E-value=0.39 Score=48.21 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccCh
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 152 (354)
+.|.+.+++.|++|+++++|+++..+ +|+|++|.+. +|+ .+.|+.||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 55666677789999999999999874 5778888764 353 5789999998765
No 146
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.72 E-value=0.34 Score=46.59 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++++++|++|..++++ + .+++.+|+++++|.||+++...
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECCCCEEEeCEEEEeecCC
Confidence 45567778888899999999999999875343 4 3667778889999999988763
No 147
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=92.71 E-value=0.36 Score=48.20 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 152 (354)
..|...|.+.+.+.|++|+.+++|+++..+++|+|.+|.. .+|+ .+.|++||+|+.-
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4688888888888999999999999988745677888764 3453 5789999998854
No 148
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.69 E-value=0.33 Score=47.91 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-CCe--EEEcC-EEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 152 (354)
..+...|.+.+++.|++|+++++|++|..+ +++|++|... +|+ .+.++ .||+|+.-
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 467888888888899999999999999974 5678787764 443 47785 68885543
No 149
>PRK06126 hypothetical protein; Provisional
Probab=92.68 E-value=11 Score=37.08 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=40.0
Q ss_pred chHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChhh-HhhhC
Q 018523 98 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 98 l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~~-l~~ll 159 (354)
|-..|.+.+++ .|++|+++++|++|+.++++ |+ +++ .+|+ ++++|.||.|-.... +++.+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 34445555554 47899999999999986444 53 444 2353 689999999877644 34443
No 150
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.68 E-value=0.83 Score=41.78 Aligned_cols=119 Identities=21% Similarity=0.374 Sum_probs=67.1
Q ss_pred cccccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHHHHHhhccCCc----eeeeec-CCCcccch
Q 018523 25 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS----KMAFLD-GNPPERLC 99 (354)
Q Consensus 25 ~~~~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~~~~~~~~~g~----~~~~~~-Gg~~~~l~ 99 (354)
-+.+++.+++||+...-|... || .++..+++-. .=-|+..+-+++-+++-+-+|. .+.+-+ .-+ ++|+
T Consensus 158 EE~L~~~tI~d~Fse~FF~sN----FW-~yW~tmFAFe-kWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQY-eSlv 230 (587)
T COG4716 158 EEKLDDLTIEDWFSEDFFKSN----FW-YYWQTMFAFE-KWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQY-ESLV 230 (587)
T ss_pred HHhcCCccHHHhhhHhhhhhh----HH-HHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchH-HHHH
Confidence 456899999999998644333 32 1222222111 1134555544444443222221 111222 223 7899
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEecC-CCC-E-EEE-EEcCCeEEE---cCEEEEcc
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELND-DGT-V-KNF-LLTNGNVID---GDAYVFAT 150 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~-v-~~V-~~~~g~~~~---ad~VI~a~ 150 (354)
.+|...|+++|+.+..+++|+.|+.+. .|+ + +.+ +..++++++ -|-|++|.
T Consensus 231 lPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTN 288 (587)
T COG4716 231 LPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTN 288 (587)
T ss_pred HHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEec
Confidence 999999999999999999999999752 332 1 112 234555442 25666654
No 151
>PRK08275 putative oxidoreductase; Provisional
Probab=92.67 E-value=0.37 Score=47.50 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..+.+.|.+.+++.|++|+.+++|++|..++++++.+|.. .+|+ .+.++.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3678888888888899999999999998854677777764 2454 47899999987663
No 152
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.64 E-value=0.38 Score=47.76 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCC---CCEEEEEE---cCCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~---g~v~~V~~---~~g~--~~~ad~VI~a~p~~~ 154 (354)
..+.+.|.+.+++.|++|..++.|++|..+++ |+|.+|.. .+|+ .+.|++||+|+.-..
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46888888888888999999999999987542 77878765 3454 578999999876643
No 153
>PRK11445 putative oxidoreductase; Provisional
Probab=92.58 E-value=8.4 Score=35.48 Aligned_cols=50 Identities=28% Similarity=0.270 Sum_probs=36.0
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEE-cCCe--EEEcCEEEEccChhh-HhhhC
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~~~-l~~ll 159 (354)
+.|++++.++.|++|..++++ + .|++ .+|+ ++++|.||.|..... +++.+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 568999999999999986555 4 3554 4564 689999999877643 44433
No 154
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=92.38 E-value=0.48 Score=43.41 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=48.4
Q ss_pred cCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC---C--eEEEcCEEEEccCh
Q 018523 91 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 152 (354)
Q Consensus 91 ~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 152 (354)
.|+|...+..++.+.|+..|...+++++|+.+..+.+|.|. |++.+ | +++++|.+.+++.-
T Consensus 247 ~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 247 GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccC
Confidence 45566678888888899999999999999999998887663 66543 3 46899998887754
No 155
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.34 E-value=0.43 Score=45.96 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.|++.|++|+++++|++|+.++++ + .|.+.+|+++.+|.||+++..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecC
Confidence 34556677788899999999999999874443 5 367778888999999998765
No 156
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.32 E-value=0.41 Score=45.79 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|..++++ + .|++.+|+++.+|.||++++.
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCC
Confidence 34456667777889999999999999874444 4 367767888999999998775
No 157
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.28 E-value=0.46 Score=45.69 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC---eEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++++++|++|..+++ .+ .|++.+| +++.+|.||+++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 4556677778889999999999999987433 34 3666555 678999999997763
No 158
>PLN02507 glutathione reductase
Probab=92.22 E-value=0.44 Score=46.32 Aligned_cols=56 Identities=13% Similarity=0.309 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..+.+.+.+.|++.|++|+++++|++|..++++ + .|++.+|+++.+|.||++++..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECCCcEEEcCEEEEeecCC
Confidence 345556666788899999999999999864333 4 3677778889999999998753
No 159
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.22 E-value=0.5 Score=44.47 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 99 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 99 ~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+++.|++++++++|++|.. ++.+ .|++.+|+++.+|.||+++..
T Consensus 189 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 189 QRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCC
Confidence 34556667788999999999999985 3334 477888889999999998775
No 160
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.20 E-value=0.54 Score=46.53 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..+...|.+.+.+.|++|+.+++|++|..+ +|+|.+|.. .+|+ .+.|+.||+|+...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 367788888888889999999999999875 677777764 3454 57899999988753
No 161
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.15 E-value=0.47 Score=46.18 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC----eEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~~ 154 (354)
.++...++...++.|++++.+++|++|..+ ++.+ +|++.++ .+++++.||.|+.++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 355566667677899999999999999985 4423 4666554 3589999999998864
No 162
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.13 E-value=0.44 Score=47.09 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 154 (354)
..|.+.|.+.+.+.|++|+++++|+++..+ +|+|++|... +|+ .+.|++||+|+.-..
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 468888888777789999999999999984 6788888764 333 578999999886543
No 163
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.02 E-value=0.41 Score=45.50 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.|++.|++|+++++|++|.. + .|++++|+++.+|.||++++.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCC
Confidence 4566677788899999999999999974 2 256778989999999998763
No 164
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.00 E-value=0.55 Score=41.94 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|+++++ ++|++|..+ ++.+ .|++.+|+++++|+||+|+...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRPF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCee-EEEeCCCCEEEeCEEEECCCCC
Confidence 4667777777788999999 899999985 3334 3777777889999999998863
No 165
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=91.86 E-value=0.43 Score=44.23 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=40.0
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+...|.+.+.+. |++|+.+++|++|+. + +|++.+| +++||+||+|+.++.
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 35667777777665 999999999999974 2 3667666 568999999998754
No 166
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=91.83 E-value=0.63 Score=46.64 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 152 (354)
..|.+.|.+.+.+.|++|+.++.++++..+++|+|.+|... +|+ .+.|++||+|+.-
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 46888898888788999999999999887546778787652 453 5789999998765
No 167
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=91.78 E-value=11 Score=35.17 Aligned_cols=37 Identities=27% Similarity=0.186 Sum_probs=30.9
Q ss_pred CceEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHhh
Q 018523 301 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 301 ~~L~~aG~~~~~~~~---~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+++.++||..+...| .|+.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 689999998776555 5888999999999999987663
No 168
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.73 E-value=0.75 Score=45.60 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..|.+.|.+.+++.|++|..+++|+++..+ +|+|.+|.. .+|+ .+.|++||+|+...
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 468888988888889999999999999874 677777653 3554 57899999988664
No 169
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.70 E-value=0.64 Score=44.67 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|.+++++++|++|+.+ ++.+. +++.+| +++.+|.||+++..
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCC
Confidence 45566777788889999999999999874 34353 666566 47899999998865
No 170
>PRK07804 L-aspartate oxidase; Provisional
Probab=91.70 E-value=0.63 Score=45.78 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-------CC-eEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-------~g-~~~~ad~VI~a~p~~ 153 (354)
..+.+.|.+.+++.|++|+.+++|++|..+++|+|.+|.+. ++ ..+.|+.||+|+...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 46888888888888999999999999988555677777653 22 357899999988663
No 171
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.70 E-value=0.55 Score=48.34 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 99 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 99 ~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+++.|++|++++.|++|.. ++++.+|++.+|+++.+|.||++++.
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCC
Confidence 34456677889999999999999985 33455688889999999999998875
No 172
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=91.65 E-value=0.55 Score=45.83 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=41.4
Q ss_pred cchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEc-CCe--EEEcC-EEEEccCh
Q 018523 97 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 152 (354)
.+...+.+.+.+ .|++|+++++|++|..+ +++|++|... +|+ .+.|+ .||+++.-
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 577888777665 48999999999999874 6778887653 343 57785 78886654
No 173
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.54 E-value=0.61 Score=44.52 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~ 152 (354)
..+.+.+.+.|++.|.+++++++|++++.++++ + .|++++|+ ++++|.|++|+.-
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCC
Confidence 456677777888877999999999999986554 5 47887775 6889999999865
No 174
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=91.39 E-value=0.36 Score=47.31 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=52.0
Q ss_pred eeee-cCCC-cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 87 MAFL-DGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 87 ~~~~-~Gg~-~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
++.| +|-| +..+..+++...++.|+.|.-+++|++|....++ +.+|++.-| .+++.+||-++.+++
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence 4456 4444 2567788888888899999999999999985444 448998777 789999999999987
No 175
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=91.31 E-value=0.72 Score=44.23 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.+-+-|.+...+.|++++.++ |++|..+++|.+..|++.+|++++||.||=+.....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 445556666677899998885 888888778888889999999999999998777643
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.28 E-value=0.59 Score=45.67 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..+.+.+.+.+++.|.+++++++|++|..++++ + .|++.+|+++.+|+||+|+...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGL-I-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-E-EEEECCCCEEEeCEEEECCCCC
Confidence 356677778888889999999999999874333 4 4777788889999999998874
No 177
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=91.28 E-value=0.85 Score=44.01 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++|+++++|++|..++++.+..+...+| +++.+|.||+++...
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 355667777888999999999999998521233433444566 368999999988764
No 178
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.27 E-value=0.77 Score=43.02 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 97 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 97 ~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
.|.+.|.+.+.+.+ ++++.+++|++|..++++ + .|++.+|+++++|.||.|......
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcChH
Confidence 46677777776654 899999999999975443 5 377778888999999998776443
No 179
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.00 E-value=0.46 Score=46.40 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcC-Ce--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 153 (354)
..+.+.|.+.+.+. |++|+.+++|++|..+ +++|.+|.+.+ ++ .+.|+.||+|+.-.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 46888888877765 8999999999999874 67777777643 33 57899999987663
No 180
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.92 E-value=15 Score=35.15 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCceEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHh
Q 018523 300 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~~---~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+|+.++||..+...| .|+.-|+.||..||+.+.+.+
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999998775554 588889999999999998765
No 181
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.78 E-value=0.73 Score=45.06 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
..+.+.+.+.+++.|.+++++++|++|..++ +.. .|.+.+|+++.+|.||+|+...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA-GLI-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeE-EEEECCCCEEEcCEEEECCCCC
Confidence 3567788888888899999999999999853 333 4777778889999999998873
No 182
>PRK08401 L-aspartate oxidase; Provisional
Probab=90.76 E-value=0.81 Score=44.07 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
..+.+.|.+.+++.|++++.+ +|+.+..+ ++++.+|.. +|+.+.++.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468899998888899999876 88888864 566767776 567889999999886643
No 183
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=90.53 E-value=0.84 Score=44.26 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcC-C--eEEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~~ 154 (354)
..+.+.|.+.+++ .|++|+.+++|++|..+ ++++.+|.+.+ + ..+.++.||+|+....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688888888877 68999999999999874 56676776644 3 3678999999887644
No 184
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.46 E-value=0.97 Score=45.54 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 152 (354)
..|...|.+.+.+.|++|+.+++|++|..+ +|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 457778888788889999999999999984 6777777653 454 4679999998865
No 185
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.46 E-value=0.73 Score=45.41 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecC-CCCEEEEEEc-CCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~-~g~v~~V~~~-~g~--~~~ad~VI~a~p~ 152 (354)
..+.+.|.+.+.+ .|++|+++++|+++..++ +|+|.+|... +|+ .+.++.||+|+.-
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 4788899888765 489999999999998753 3778787653 453 3789999998876
No 186
>PRK09897 hypothetical protein; Provisional
Probab=90.41 E-value=0.76 Score=44.90 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=37.4
Q ss_pred chHHHHHHHHHcC--CEEEecceeeEEEecCCCCEEEEEEcC-CeEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~g--~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~ 152 (354)
..+.+.+.+++.| ++++.+++|++|..++++ + .|++.+ |.++.+|+||+|+.-
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEECCCCeEEEcCEEEECCCC
Confidence 3344444455566 688899999999885444 4 366655 467899999998864
No 187
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=90.33 E-value=0.82 Score=45.06 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.8
Q ss_pred cchHHHHHHHHH---c-CCEEEecceeeEEEecCCCCEEEEEEc---C--------------C-eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQS---L-GGEVRLNSRVQKIELNDDGTVKNFLLT---N--------------G-NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~---~-g~~i~~~~~V~~I~~~~~g~v~~V~~~---~--------------g-~~~~ad~VI~a~p~ 152 (354)
.+++.|.+.+++ . |++|+++++++++..+ +|+|++|... + + .++.|+.||+|+.-
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 577887766652 3 5899999999999884 6788898751 1 1 25788999997744
No 188
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=90.32 E-value=0.99 Score=44.55 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=41.7
Q ss_pred chHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 98 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 98 l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
+...+.+.+++. |+++. ...|+++..++++++.+|.+.+|..+.|+.||+|+....
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 445566666666 55665 557888876435668789998898999999999998875
No 189
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.08 E-value=2.4 Score=40.79 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=44.2
Q ss_pred eeeecCCCc-ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC---Ce--EEEcCEEEEccCh
Q 018523 87 MAFLDGNPP-ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPV 152 (354)
Q Consensus 87 ~~~~~Gg~~-~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~ 152 (354)
+.|-+|-++ .++.-.++=-...+|..+..-.+|.++.++.+|++.++.+.| |+ +++|..||.|+.+
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGp 285 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGP 285 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCC
Confidence 344465542 233333333334678999999999999998888887777655 54 4688899986644
No 190
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.04 E-value=1 Score=43.44 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC--C--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|.+|+++++|++|..++++ + .|++.+ | +++.+|.||+++..
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-V-SVAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-E-EEEEEeCCCceeEEEcCEEEEccCC
Confidence 45666777788899999999999999875333 4 355443 3 46899999998765
No 191
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.89 E-value=1.1 Score=42.70 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++++++|++|.. ++.+ +.+.+|+++.+|.||++++..
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCcc
Confidence 3455566777888999999999999985 3333 455678889999999988763
No 192
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=89.88 E-value=0.83 Score=42.33 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|.. + +|++.+|+++.+|.||++++.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCC
Confidence 3456667778889999999999999863 2 266678889999999999875
No 193
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.81 E-value=1.3 Score=42.75 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc--CC--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.|++.|++|+++++|++|..+ ++.+ .|++. +| +++++|.||+++..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCc
Confidence 45677778888899999999999999874 3334 34443 56 46899999998765
No 194
>PRK06370 mercuric reductase; Validated
Probab=89.76 E-value=1.2 Score=42.79 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEE--cC-CeEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TN-GNVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~--~~-g~~~~ad~VI~a~p~ 152 (354)
+.+.+.+.+++.|++|+++++|++|..++++ + .|.+ .+ +.++.+|.||+++..
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGDG-I-AVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-E-EEEEEeCCCceEEEeCEEEECcCC
Confidence 4556777788899999999999999875343 3 2333 23 457899999998865
No 195
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=89.58 E-value=18 Score=33.95 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=31.0
Q ss_pred CceEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHh
Q 018523 301 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 301 ~~L~~aG~~~~~~~~---~~~~gAi~sG~~aa~~il~~~ 336 (354)
+|+.++||..+...| .|+.-|+.||..||+.+.+.+
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 689999998876655 588999999999999998765
No 196
>PTZ00058 glutathione reductase; Provisional
Probab=89.36 E-value=1.5 Score=43.24 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.|++.|+++++++.|++|..++++.+. +...++ +++.+|.||+++..
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCC
Confidence 45667777888899999999999999874343342 444343 57999999998765
No 197
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.36 E-value=1.2 Score=42.41 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|..+ ++.+. +. .+|+++.+|.||+++..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~-~~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VV-TEDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EE-ECCeEEEcCEEEEeeCC
Confidence 34455566677889999999999999874 34342 44 35778999999998755
No 198
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=89.18 E-value=0.63 Score=41.70 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=36.8
Q ss_pred cCCEEEecceeeEEEec-CCCCEEEEEEcC--Ce----EEEcCEEEEccChhhHhhh
Q 018523 109 LGGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~-~~g~v~~V~~~~--g~----~~~ad~VI~a~p~~~l~~l 158 (354)
.+.+|+++++|++|..+ +++++++|++.+ +. .+.++.||++...-...+|
T Consensus 206 ~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 206 PNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp TTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred CCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 48999999999999764 456788888754 33 4578999998887666555
No 199
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.00 E-value=1.4 Score=42.85 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=42.9
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.+.+.+.|++.|+++++++.|++|...+ +.+ .|.+.+|+++.+|.||+++...
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCC
Confidence 45677778888999999999999998743 334 4777778889999999988763
No 200
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=88.96 E-value=27 Score=35.13 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHcCC--EEEecceeeEEEecCCC--CEEEEEEc------CC--eEEEcCEEEEccCh-hhHhhhC
Q 018523 97 RLCLPIVEHIQSLGG--EVRLNSRVQKIELNDDG--TVKNFLLT------NG--NVIDGDAYVFATPV-DILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~--~i~~~~~V~~I~~~~~g--~v~~V~~~------~g--~~~~ad~VI~a~p~-~~l~~ll 159 (354)
.+-+.|.+.+.+.|+ +++.+++|++++.++++ .| .|++. +| ++++||.||-+=.. +..++.+
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 355666777766664 78899999999875322 35 36654 35 57899999987766 4445554
No 201
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=88.91 E-value=1.1 Score=41.61 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=50.2
Q ss_pred cCCCcccchHHHHH----HHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh
Q 018523 91 DGNPPERLCLPIVE----HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 91 ~Gg~~~~l~~~l~~----~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 158 (354)
++.|..-|++-|.+ .+++.|+.|+-|+.|.++..... .+. +.+.||.+++.|.||+++.-.--..|
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-nl~-lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-NLV-LKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-ceE-EEecCCCeeeeeeEEEEecCCCchhh
Confidence 66765566666654 46678999999999999998544 453 88999999999999999876444444
No 202
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.77 E-value=1.4 Score=41.98 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|..+ ++.+ .|+..++ ++.+|.||+++..
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecC
Confidence 45566777788899999999999999874 4434 3555444 5889999998754
No 203
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.57 E-value=1.3 Score=47.67 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=42.3
Q ss_pred cchHHHHHHHHH---cCCEEEecceeeEEEecC----C----CCEEEEEEc-----CCe--EEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQS---LGGEVRLNSRVQKIELND----D----GTVKNFLLT-----NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~---~g~~i~~~~~V~~I~~~~----~----g~v~~V~~~-----~g~--~~~ad~VI~a~p~ 152 (354)
.+...|.+.+++ .|++|+++++|+++..++ + ++|+||.+. +|+ .+.|+.||+|+.-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 466777777765 389999999999999853 1 268888765 453 5789999997755
No 204
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=88.53 E-value=1.4 Score=44.02 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
.+.+.|.+.+++.| ++|+.+++|++|..+ +++|++|.. .+|+ .+.|+.||+|+...
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 56777777776665 999999999999874 566777643 3453 68999999988753
No 205
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.48 E-value=1.1 Score=43.04 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCE--EEecceeeEEEecCCCCEEEEEEcCC--e--EEEcCEEEEccChhhH
Q 018523 97 RLCLPIVEHIQSLGGE--VRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPVDIL 155 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~--i~~~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~~~l 155 (354)
.+.+-|.+..+..|.+ |+++++|++|... ++++ .|++.++ . +..+|+||+|+.....
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w-~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKW-RVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeE-EEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 5667777776677876 9999999999985 3434 3665432 2 4679999999886543
No 206
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=88.28 E-value=1.8 Score=41.39 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
..+.+.+.+.+++.|++++++++|++|.. ++.+..+.++ +.++.+|.||++++.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEcCEEEECcCC
Confidence 34556677778889999999999999964 3334445554 457999999998876
No 207
>PRK10262 thioredoxin reductase; Provisional
Probab=88.23 E-value=1.3 Score=40.30 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC------eEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG------NVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g------~~~~ad~VI~a~p~ 152 (354)
+.+.+.+.+++.|++++++++|++|..+ ++.+.+|++.++ +++.+|.||+++..
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 4455666677789999999999999864 333545665432 36899999998765
No 208
>PRK08071 L-aspartate oxidase; Provisional
Probab=88.20 E-value=1.2 Score=43.56 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC--Ce--EEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~ 152 (354)
.+.+.|.+.++ .|++|+.+++|++|..+ ++++.+|.+.+ |+ .+.|+.||+|+..
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 46777776664 58999999999999874 66777776543 33 5789999998865
No 209
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.14 E-value=1.9 Score=41.55 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---C--CeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---N--GNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~--g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.|++.|++|+++++|++|..++++ + .+++. + ++++++|.||+++...
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADG-V-SLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-E-EEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 35667777888899999999999999874344 3 23332 2 3578999999988753
No 210
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=87.94 E-value=1.8 Score=41.57 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---CCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|..++++ + .|++. +++++.+|.||+++..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGG-K-IITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE-E-EEEEEeCCCceEEEeCEEEEeECC
Confidence 34566677778889999999999999874332 3 34443 2367999999998765
No 211
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=87.90 E-value=2 Score=41.18 Aligned_cols=50 Identities=18% Similarity=0.305 Sum_probs=35.0
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc---------CC-----------eEEEcCEEEEccCh
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---------NG-----------NVIDGDAYVFATPV 152 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~---------~g-----------~~~~ad~VI~a~p~ 152 (354)
.+.+++.|+++++++.+++|..+++|++++|++. +| .++.+|.||+++..
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 3556778999999999999986556667666553 22 24677777777544
No 212
>PRK07236 hypothetical protein; Provisional
Probab=87.83 E-value=1.2 Score=41.62 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=34.3
Q ss_pred CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 110 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 110 g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.+|+++++|++|+.++++ + .|++.+|+++++|.||.|-...
T Consensus 112 ~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDR-V-TARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CcEEEcCCEEEEEEecCCe-E-EEEECCCCEEEeCEEEECCCCC
Confidence 4689999999999985444 6 4888889899999999986653
No 213
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.79 E-value=1.6 Score=41.67 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|++|.. + .|++.+|+++.+|.||++++.
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCC
Confidence 4556777788889999999999999963 2 256667888999999998775
No 214
>PRK14727 putative mercuric reductase; Provisional
Probab=87.65 E-value=1.5 Score=42.31 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++++++|++|..++++ + .|...++ ++.+|.||++++..
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNG-F-VLTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE-E-EEEEcCC-eEEeCEEEEccCCC
Confidence 34566677788899999999999999874333 4 3555444 68999999988774
No 215
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=87.64 E-value=1.3 Score=41.77 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
|.+.|.+.+. +..++++++|++|+.++++ + .|++.+|.++++|.||.|-..+..
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCccHH
Confidence 4455554432 4678999999999986554 5 478888888999999998877543
No 216
>PLN02546 glutathione reductase
Probab=87.48 E-value=2.1 Score=42.28 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++|++++.|++|..++++.+ .|...+++...+|.||+++...
T Consensus 294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccc
Confidence 3444566778889999999999999987445544 3555555444589999988653
No 217
>PRK14694 putative mercuric reductase; Provisional
Probab=87.32 E-value=2.1 Score=41.25 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++++++|++|..+ ++.+ .+.+.+ .++.+|.||+++...
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~-~~i~~D~vi~a~G~~ 272 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYN-GREF-ILETNA-GTLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEECC-CEEEeCEEEEccCCC
Confidence 46677778888899999999999999874 3333 355544 479999999987653
No 218
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=87.19 E-value=0.92 Score=44.51 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=36.6
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCC-e---EEEcCEEEEccChhhHhh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDILKL 157 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~---~~~ad~VI~a~p~~~l~~ 157 (354)
+.|.+|+++++|++|..+ ++++++|++.++ + .+.++.||++...-...+
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~ 258 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQ 258 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHH
Confidence 457999999999999985 667888887543 2 247889999877633333
No 219
>PLN02985 squalene monooxygenase
Probab=87.15 E-value=31 Score=33.71 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEc--CCe--EEEcCEEEEccCh-hhHhhhC
Q 018523 97 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPV-DILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~-~~l~~ll 159 (354)
.|.+.|.+.+++. |++++.+ +|+++..+ ++.+.+|++. +|+ +++||.||.|-.. +.+++.+
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l 214 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSL 214 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHh
Confidence 4667777776665 5788755 57777663 4555566653 564 3568999987665 4455544
No 220
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.04 E-value=2.1 Score=41.40 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC---eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.|++.|++|++++.|++|... ++.+ .|++.+| +++.+|.||+++..
T Consensus 221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 221 DCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecC
Confidence 45566777888899999999999999874 3334 3665555 37899999999875
No 221
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.01 E-value=1.9 Score=42.87 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
..+.+.|.+.+.+ .|++|+.++.|+++..+ ++++.+|.. .+|+ .+.|+.||+|+.-.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3577888887765 58999999999999874 567777654 3554 57899999987664
No 222
>PRK07846 mycothione reductase; Reviewed
Probab=86.29 E-value=2.6 Score=40.46 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=35.1
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.|.+++++++|++|+.+ ++.+ .|++.+|+++.+|.||+++...
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCc
Confidence 568999999999999874 3334 3777778889999999998763
No 223
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.23 E-value=2.4 Score=42.58 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHc--------C-----CEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSL--------G-----GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~--------g-----~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 152 (354)
..+.+.|.+.+.+. | ++|..+++|+++..+ +|+|.+|.. .+|+ .+.|++||+|+..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 46788888877666 6 899999999999874 677777654 3453 5789999998875
No 224
>PRK05868 hypothetical protein; Validated
Probab=86.05 E-value=2.8 Score=39.03 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=38.2
Q ss_pred cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhhC
Q 018523 109 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQL 159 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ll 159 (354)
.|.+++++++|++|+.+ ++.| .|++.+|+++++|.||-|-.. +.+++.+
T Consensus 117 ~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 117 PSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred CCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 57899999999999874 4446 488889989999999987766 4445543
No 225
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.92 E-value=2.3 Score=42.30 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcC----CEEEecceeeEEEecCCCCEEEEEEcC---Ce--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g----~~i~~~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~ 154 (354)
..|...|.+.+.+.+ ++|..+++|+++..+++|+|.+|...+ |+ .+.|++||+|+.-..
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467788877666543 679999999999875567888887643 33 468999999876533
No 226
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=85.91 E-value=2.6 Score=41.77 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=41.0
Q ss_pred chHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 98 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+...+.+.+.+. |+++ +.+.|++|..+ ++++.+|.+.+|..+.|+.||.|+...
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 345555556554 6776 57789999874 566878999999999999999998863
No 227
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=85.83 E-value=2 Score=42.12 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=36.8
Q ss_pred cCCEEEecceeeEEEecCC--CCEEEEEEc---CCe--EEEcCEEEEccChhhHhhh
Q 018523 109 LGGEVRLNSRVQKIELNDD--GTVKNFLLT---NGN--VIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~~~--g~v~~V~~~---~g~--~~~ad~VI~a~p~~~l~~l 158 (354)
.+.+|++++.|++|+.+++ ++|++|++. +|+ +++|+.||+|+..=...+|
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRL 283 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQI 283 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHH
Confidence 3489999999999998654 467777654 343 5789999998876555554
No 228
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=85.62 E-value=1.3 Score=45.78 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+++.|++++++++|++|..+ + + .|++.+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~-~-k--~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTD-Q-K--QVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECC-C-C--EEEECCCcEeeCCEEEECCCCC
Confidence 45567789999999999999873 3 3 2677788889999999998864
No 229
>PRK13748 putative mercuric reductase; Provisional
Probab=85.45 E-value=2.8 Score=41.44 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++|+++++|++|..+ ++.+ .+.+.++ ++.+|.||+++..
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCC
Confidence 45566777788899999999999999874 4434 3555444 6899999998876
No 230
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=85.30 E-value=3.4 Score=39.71 Aligned_cols=53 Identities=8% Similarity=0.145 Sum_probs=39.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|.+|+++++|++|+.+ ++.+ .+.. +| +++.+|.||+++..
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCC
Confidence 35566777788899999999999999864 3323 2433 34 36899999998875
No 231
>PLN02815 L-aspartate oxidase
Probab=85.15 E-value=2.3 Score=42.35 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecCCC---CEEEEEEc---CCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG---TVKNFLLT---NGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g---~v~~V~~~---~g~--~~~ad~VI~a~p~ 152 (354)
..+.+.|.+.+.+. |++|+.+++++++..+++| +|+||... +|+ .+.|++||+|+.-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 45788888877654 8999999999999875443 26787652 453 5689999998764
No 232
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=84.78 E-value=3.8 Score=39.34 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=35.1
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.|.+++++++|++|..++++ + .|++.+|+++.+|.||++++..
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDG-V-TLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCe-E-EEEEcCCCEEEcCEEEEeeccC
Confidence 468999999999999875333 5 3677778889999999998753
No 233
>PRK06753 hypothetical protein; Provisional
Probab=84.58 E-value=2.5 Score=39.25 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=36.8
Q ss_pred CCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhhC
Q 018523 110 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQL 159 (354)
Q Consensus 110 g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~ll 159 (354)
+.+|+++++|++|+.+ ++.+ .|++.+|+++++|.||-|-.. +.+++.+
T Consensus 110 ~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 110 EDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred CceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchHHHHHh
Confidence 4689999999999975 4446 488888888999999998776 3444443
No 234
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.50 E-value=2.7 Score=39.51 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 106 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 106 l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.+.|.++++++.|+.|..+ +. .|++.+|+++.||++|+|+...
T Consensus 68 ~~~~~i~~~~g~~V~~id~~-~~---~v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRD-TR---ELVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHCCCEEEcCCEEEEEECC-CC---EEEECCCCEEEcCEEEEccCCC
Confidence 45679999999999999873 33 2667788889999999988764
No 235
>PRK09077 L-aspartate oxidase; Provisional
Probab=84.34 E-value=3.9 Score=40.21 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecC-----CCCEEEEEEc---CCe--EEEcCEEEEccChh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~-----~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 153 (354)
..+...|.+.+.+. |++|..+++|+++..++ +++|++|... +|+ .+.++.||+|+.-.
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 46778888777654 89999999999998643 3678787753 353 57899999987663
No 236
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.15 E-value=1.5 Score=40.62 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=38.2
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
+...+.+.+++.|++++.+ +|++|..+ +. .|.+.+|+++.+|++|+|+....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~-~~---~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPD-RR---KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEecc-cC---EEEECCCCcccccEEEEccCCCC
Confidence 3334455566679998875 79999874 33 37788888899999999887643
No 237
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=84.10 E-value=4.9 Score=39.94 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEE---cCC--eEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~ 152 (354)
..|.+.|.+.+.+ .|+++..++.|+++..+ +|+|.+|.. .+| ..+.|+.||+|+.-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 4688888877765 47899999999999984 677877754 356 35789999998765
No 238
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=83.92 E-value=4.3 Score=40.57 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCC--CCEEEEEE---cCCe--EEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 153 (354)
.+...+...+.+.+++|+.+++|+++..+++ |+|.||.. .+|+ .+.|++||+|+...
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 5566666666677789999999999998532 67888765 2453 57899999988764
No 239
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=83.66 E-value=3.9 Score=40.61 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEE---cCC--eEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~ 152 (354)
..|.+.|.+.+.+. +++++.++.|+++..+ +|+|.+|.. .+| ..+.|+.||+|+.-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 46777887766664 7899999999999974 677777653 356 36789999998865
No 240
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=83.07 E-value=2.2 Score=38.32 Aligned_cols=58 Identities=26% Similarity=0.251 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHc------CCEEEecceeeEEEecCCCCEEEEEEcC--Ce--EEEcCEEEEccChhhH
Q 018523 97 RLCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDIL 155 (354)
Q Consensus 97 ~l~~~l~~~l~~~------g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~~~l 155 (354)
.|+.+|...+++. -.+|.++++|+.|.. ++|+|.+|++.| |+ .+.+++||+++.-..+
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 5777777766642 279999999999996 578898888754 43 4678988887655433
No 241
>PRK12831 putative oxidoreductase; Provisional
Probab=82.74 E-value=4.3 Score=39.11 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 298 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+..++||.+||-+.+. ..+..|+..|+.||..|.+.+.
T Consensus 424 Ts~pgVfAaGD~~~g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888765532 4667788888888888777664
No 242
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=82.70 E-value=5 Score=38.69 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEE
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 135 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~ 135 (354)
.+.+++.|+++++++.+++|..+++|++++|++
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~ 359 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDGRVTGVGL 359 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEE
Confidence 344567899999999999998655566655554
No 243
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=82.56 E-value=0.4 Score=45.63 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHcCCEEEecceeeEEEecCCCCEEEEEEcC--C-eEEEcCEEEEccChhhHhhh
Q 018523 105 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G-NVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 105 ~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g-~~~~ad~VI~a~p~~~l~~l 158 (354)
.+.+.|++|++++.|+++..+ ++++++|++.+ | .+++|+.||=|+.-..+..+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~ 154 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGDGDLAAL 154 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 336679999999999999985 66787888764 3 57899999988876666655
No 244
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.49 E-value=4.7 Score=40.74 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
++..+|||.+||-+.+. ..+..|+..|+.||..|...|+
T Consensus 614 ~Ts~~gVfAaGD~~~g~--~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 614 QTSNPKIFAGGDAVRGA--DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred ccCCCCEEEcCCcCCCC--cHHHHHHHHHHHHHHHHHHHhC
Confidence 34457888888876542 4667888888888888887765
No 245
>PRK06475 salicylate hydroxylase; Provisional
Probab=82.23 E-value=4.8 Score=37.81 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=42.4
Q ss_pred cchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEE---cCCeEEEcCEEEEccChhh-HhhhC
Q 018523 97 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI-LKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~~-l~~ll 159 (354)
.|.+.|.+.+.+ .|++|+++++|++|..++++ + .|++ .+++++++|.||-|-.... .++.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 466777776655 47899999999999875443 5 3554 2345789999998877744 44444
No 246
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=4.4 Score=36.59 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 95 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 95 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+..|.+.+.+..+..|.++.. ..|.+++..++ .. .|++.+|+ +++++||+|+....-
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F-~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PF-KVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eE-EEEECCCe-EEEeEEEECcCCccc
Confidence 356778887777778888888 78888887432 34 47887776 999999999887554
No 247
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=82.04 E-value=4.5 Score=39.05 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-----CC---------eEEEcCEEEEccC
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----NG---------NVIDGDAYVFATP 151 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-----~g---------~~~~ad~VI~a~p 151 (354)
.+.+.+.|+++++++.+++|.. ++|++++|++. +| +++.+|.||+++.
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 3445678999999999999975 46667666542 22 3566777776654
No 248
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=81.44 E-value=7.1 Score=33.30 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-----------eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----------NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-----------~~~~ad~VI~a~p~ 152 (354)
.++..|+...-+.|.+|..++.|+.|...++.+|.+|.++-. -+++++.||-++..
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 456666666557899999999999998854536888877522 35677777777654
No 249
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.10 E-value=5.1 Score=39.17 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcC---C--eEEEcCEEEEccCh
Q 018523 102 IVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 152 (354)
Q Consensus 102 l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 152 (354)
+.+.+++ .|++|++++.|++|..+ ++++.+|++.+ | +++.+|.||+++..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 3455555 59999999999999863 45565676643 2 46899999998765
No 250
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=80.81 E-value=5.4 Score=37.25 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEE--EEEcCCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++.|++++++++|.+|+.+.+. ... +...++..+.+|.|+.+.+.
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKGNT-LVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEcccCc-ceeeEEEEeCCcEEEeeEEEEeecc
Confidence 46677777888899999999999999985333 222 45667788999999998765
No 251
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=79.97 E-value=2.1 Score=42.78 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 101 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 101 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
.|.+.+++.|.++++++.+++|.. ++++.+|..+||..+.||-||+++..
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccc
Confidence 344556778999999999999987 34576899999999999999998865
No 252
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=79.94 E-value=4.4 Score=42.19 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+++.|++++++++|++|..+ .++ |.+.+|+++.||++|+|+...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQ--EKV--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCC--CcE--EEECCCcEEECCEEEECCCCC
Confidence 34456789999999999999863 333 677788889999999998864
No 253
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=79.78 E-value=2 Score=41.44 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.9
Q ss_pred EecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhh
Q 018523 114 RLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 114 ~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 158 (354)
.....|+.+..+++.+|.+|++.+|..+.|++||+|+..-.-..+
T Consensus 118 l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 118 LLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred ehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 344567777764333588999999999999999999876544444
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=79.46 E-value=7.2 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=19.9
Q ss_pred HHHHHHHcCCEEEecceeeEEEecC
Q 018523 102 IVEHIQSLGGEVRLNSRVQKIELND 126 (354)
Q Consensus 102 l~~~l~~~g~~i~~~~~V~~I~~~~ 126 (354)
..+.+++.|+++++++.|++|..++
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~ 341 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDE 341 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecC
Confidence 3456677899999999999998643
No 255
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=78.85 E-value=3.1 Score=38.23 Aligned_cols=42 Identities=29% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCEEEecceeeEEEecCCCCEEEEEEcC---C--eEEEcCEEEEccCh
Q 018523 110 GGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 152 (354)
Q Consensus 110 g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 152 (354)
..+|+.+++|++++.+++|.+ .+++.+ | .++++|+||+|+..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 368999999999999765555 366654 2 46799999999864
No 256
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=78.75 E-value=9.5 Score=32.50 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-----------CCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------NGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-----------~g~~~~ad~VI~a~p~ 152 (354)
.+...|+...-+.|++|...+.|+.+...++++|.+|.++ |--+++++.||-++..
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 5666666655568999999999999988655788888874 2237899999998754
No 257
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=78.65 E-value=14 Score=39.45 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc----CCeEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT----NGNVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~----~g~~~~ad~VI~a~p~ 152 (354)
.+...+.+.+++.|++|++++.|++|.. ++.+.+|++. +++++.+|.|+++...
T Consensus 352 ~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 352 DVSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred chhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 4556677778889999999999999985 3345456554 3467899999998765
No 258
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=78.57 E-value=8.4 Score=34.18 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=38.1
Q ss_pred chHHHHHHHHHc-CCEEEecceeeEEEecCCCCEEEEEEc---CC--eEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~ 152 (354)
....+.+.+++. |.+++++++|++|..+ + ++..|++. +| +++.+|.||++++.
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD-N-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc-C-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 345566677777 9999999999999863 3 45445542 23 56899999998874
No 259
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=78.53 E-value=6.6 Score=36.56 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 105 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 105 ~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+++.|.+++++++|++|..+ + +. |++ +|+++.+|+||+|+...
T Consensus 67 ~~~~~gv~~~~~~~V~~id~~-~-~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 67 FAEQFNLRLFPHTWVTDIDAE-A-QV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHhCCCEEECCCEEEEEECC-C-CE--EEE-CCeEEeCCEEEECCCCC
Confidence 345679999999999999873 3 32 454 56789999999998864
No 260
>PLN02661 Putative thiazole synthesis
Probab=78.48 E-value=9.9 Score=35.04 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=39.4
Q ss_pred cchHHHHHHHH-HcCCEEEecceeeEEEecCCCCEEEEEEc------C--C------eEEEcCEEEEccC
Q 018523 97 RLCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLT------N--G------NVIDGDAYVFATP 151 (354)
Q Consensus 97 ~l~~~l~~~l~-~~g~~i~~~~~V~~I~~~~~g~v~~V~~~------~--g------~~~~ad~VI~a~p 151 (354)
.+.+.|.+.+. ..|++|+.++.|+++..+ ++++.+|.+. + + ..++|++||+|+.
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 34456666544 368999999999999985 5667787742 1 1 2579999999987
No 261
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=78.08 E-value=4.1 Score=36.85 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCe--EEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~~ 153 (354)
++-+.|...+++.|+.+..+-+|.+..-. +++|+.|-+.++. -+++|..|+|...-
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecccc
Confidence 78899999999999999999999999884 6678777777653 35788888775543
No 262
>PRK02106 choline dehydrogenase; Validated
Probab=77.55 E-value=4.1 Score=40.27 Aligned_cols=50 Identities=4% Similarity=-0.059 Sum_probs=37.2
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCC--e--EEEcCEEEEccChhhHhhh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~~~l~~l 158 (354)
..+.+|++++.|++|..+ ++++++|++.++ . .+.++.||++...-...+|
T Consensus 213 ~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~L 266 (560)
T PRK02106 213 RPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQL 266 (560)
T ss_pred CCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHH
Confidence 356899999999999986 567888887543 2 3578999998876544444
No 263
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=77.45 E-value=3.9 Score=40.92 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=40.8
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+...-....+++|++++++.+|++|..+ .+. |+++.|.++.+|.+|+|+....+
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~--~k~--V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRA--NKV--VTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccC--cce--EEccCCcEeecceeEEecCcccc
Confidence 3333345567899999999999999973 333 78888999999999997765433
No 264
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=77.39 E-value=8.5 Score=36.06 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc-CCe--EEEcCEEEEccCh-hhHhhhCC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGDAYVFATPV-DILKLQLP 160 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad~VI~a~p~-~~l~~ll~ 160 (354)
.+...|.+.+.+.|++++++++++.+...++..+ +|++. +|+ ++++|.||-|-.. +.+++.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 4556677777778999999999988865222223 46664 675 6899999987666 44555554
No 265
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.11 E-value=3.3 Score=41.84 Aligned_cols=42 Identities=29% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
.+.+++.|+++++++.|.. + ++..+ ....+|+||+++.....
T Consensus 384 ~~~~~~~Gv~~~~~~~v~~-----~-----i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 384 REIFSAMGIEFELNCEVGK-----D-----ISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHCCeEEECCCEeCC-----c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 3445556777777776521 0 11111 01358999998876544
No 266
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=76.97 E-value=1.3 Score=39.68 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred ccCCCHHHHHHHcCCChHHHHHHHHHHHhhhccCCcccccHHHHHHHH------HHHhhccCCceeeeecCCCcccchHH
Q 018523 28 QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL------NRFLQEKHGSKMAFLDGNPPERLCLP 101 (354)
Q Consensus 28 ~d~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~~------~~~~~~~~g~~~~~~~Gg~~~~l~~~ 101 (354)
.+-.++++-.-+. +++++++.++.++....||.+|+++++..+.+.= .+++.. ...+.|++|+ ..+.+.
T Consensus 129 ~~~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d---~yQGlP~~GY-T~~~~k 203 (374)
T COG0562 129 AEPQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD---TYQGLPKDGY-TAMFEK 203 (374)
T ss_pred cchhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc---ccccCccccH-HHHHHH
Confidence 4556677777776 7889999999999999999999999998775421 112211 1246789887 345555
Q ss_pred HHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh
Q 018523 102 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 157 (354)
Q Consensus 102 l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ 157 (354)
|. ...+.+|+|||.-..|... .. ...+..||.|.|...+-.
T Consensus 204 Ml---~hp~I~V~Lntd~~~~~~~-~~-----------~~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 204 ML---DHPNIDVRLNTDFFDVKDQ-LR-----------AIPFAPVVYTGPIDAYFD 244 (374)
T ss_pred Hh---cCCCceEEecCcHHHHhhh-hc-----------ccCCCceEEecchHhhhc
Confidence 44 4457899999877666542 11 134568999999877744
No 267
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=76.93 E-value=4.1 Score=38.89 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=34.7
Q ss_pred HHHHHHcCCEEEecceeeEEEecCCCCEEEEEE-cCCeEEE--cCEEEEccChh
Q 018523 103 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVID--GDAYVFATPVD 153 (354)
Q Consensus 103 ~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~-~~g~~~~--ad~VI~a~p~~ 153 (354)
.+.+++.|++++++++|++|..+ ++.+ .+.. .+|++++ +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCC
Confidence 34566789999999999999874 3333 2332 1255666 99999998764
No 268
>PRK12831 putative oxidoreductase; Provisional
Probab=76.58 E-value=3.6 Score=39.64 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=29.9
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC-eEEEcCEEEEccChh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 153 (354)
+.+...+.+++.|+++++++.|.. . |+..+. +.+.+|+||+|+..+
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~-------~---v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK-------T---VTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC-------c---CCHHHHHhccCCCEEEEeCCCC
Confidence 455555667778999999986621 1 222232 245689999999874
No 269
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=76.02 E-value=5.4 Score=39.13 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHcC--CEEEecceeeEEEecCC----CCEEEEEEcC-Ce--EEEcCEEEEccChhhHhh
Q 018523 97 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDD----GTVKNFLLTN-GN--VIDGDAYVFATPVDILKL 157 (354)
Q Consensus 97 ~l~~~l~~~l~~~g--~~i~~~~~V~~I~~~~~----g~v~~V~~~~-g~--~~~ad~VI~a~p~~~l~~ 157 (354)
.+.+-|.+..+..+ ..|++||+|++|++.++ ++. .|++.+ |+ +..+|+||+++.......
T Consensus 85 ~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 85 EVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp HHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred HHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 45555555555544 48999999999998543 333 466644 43 457899999887755444
No 270
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=75.76 E-value=10 Score=36.31 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=36.9
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCC--eEEEcCEEEEccCh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 152 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 152 (354)
+.+.+.+.+++. .+|+++++|++|+.+++..+ .++..++ +++++|.||+++..
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCC
Confidence 445566667777 99999999999987433223 2333233 56899999998765
No 271
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=75.43 E-value=3.9 Score=39.18 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
+++..+|||.+||-+.+. ..+..|+..|+.||..|...|
T Consensus 411 ~~Ts~~~VfA~GD~~~g~--~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILGA--ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CccCCCCEEEecCCCCCc--HHHHHHHHHHHHHHHHHHhhC
Confidence 456789999999987542 567889999999999987654
No 272
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=75.17 E-value=4.7 Score=38.91 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+++..++||.+||-+.+. ..+..|+..|+.||..|.+.+.
T Consensus 426 ~~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999987642 4678899999999999998874
No 273
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=74.37 E-value=11 Score=35.95 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcC--CEEEecceeeEEEecCCCCEEEEEEcCCeE--EEcCEEEEccChhhHhh
Q 018523 98 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPVDILKL 157 (354)
Q Consensus 98 l~~~l~~~l~~~g--~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~--~~ad~VI~a~p~~~l~~ 157 (354)
+-+-+...+++.+ -+|+.+++|+.+..++++....|++++|.+ +++|.||+|+.......
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~ 147 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY 147 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC
Confidence 6677777777766 489999999999887665444588877754 55999999887744333
No 274
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=74.13 E-value=5.6 Score=32.94 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCEEEecceeeEEEecCCCCE----EEE---EEcCCeEEEcCEEEEccCh
Q 018523 101 PIVEHIQSLGGEVRLNSRVQKIELNDDGTV----KNF---LLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 101 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v----~~V---~~~~g~~~~ad~VI~a~p~ 152 (354)
.+.+.+...+.+++++++|.+|... .+.+ ..+ ...++.++.||+||+|+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeecccccccccc-ccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 4455556678999999999999874 3321 012 2234568999999999874
No 275
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.73 E-value=5.5 Score=38.40 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..++||.+||-..+. ..+..|+..|+.||..|...++
T Consensus 427 ~~T~~~gVfa~GD~~~~~--~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVRGA--DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred ccCCCCCEEEECCcCCCc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 345678999999987642 4567899999999999988765
No 276
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=6.3 Score=33.60 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=48.8
Q ss_pred eeecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCc
Q 018523 88 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 161 (354)
Q Consensus 88 ~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~ 161 (354)
++|+|-.+..|.+.+.++-.+.|.+|... .|.++..+.. -. .|.+ +.+.+.+|+||+++...+-+--+|.
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ssk-pF-~l~t-d~~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSK-PF-KLWT-DARPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccCC-Ce-EEEe-cCCceeeeeEEEecccceeeeecCC
Confidence 46776555578888888777788888765 5777877432 23 2444 5567899999999988665544664
No 277
>PRK07538 hypothetical protein; Provisional
Probab=72.82 E-value=9.6 Score=35.96 Aligned_cols=61 Identities=28% Similarity=0.426 Sum_probs=40.1
Q ss_pred cchHHHHHHHHH-cC-CEEEecceeeEEEecCCCCEEEEEEcCC-----eEEEcCEEEEccChh-hHhhhC
Q 018523 97 RLCLPIVEHIQS-LG-GEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVD-ILKLQL 159 (354)
Q Consensus 97 ~l~~~l~~~l~~-~g-~~i~~~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~-~l~~ll 159 (354)
.|-+.|.+.+.+ .| .+|+++++|++|+.++++.+ +.+.++ ++++||.||-|-... .+++.+
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 345556665544 46 46999999999998656533 343332 478999999887764 444443
No 278
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=71.66 E-value=13 Score=35.89 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC--C--eEEEcCEEEEccCh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 152 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+.+++. .+++++++|++|+.++++ + .|++.+ | +++++|.||+++..
T Consensus 216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecc
Confidence 3445566667666 999999999999875443 4 355543 2 46899999998876
No 279
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=71.62 E-value=46 Score=31.09 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=38.5
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcC--CeEEEc--C-EEEEccChhhHhhh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN--GNVIDG--D-AYVFATPVDILKLQ 158 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~--g~~~~a--d-~VI~a~p~~~l~~l 158 (354)
+++++.|.+...+ .++++.-+ .|.++.. ++|.|+||++++ |++.++ - .|||..=...+++-
T Consensus 147 GRFvq~lR~ka~slpNV~~eeG-tV~sLle-e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrs 213 (509)
T KOG1298|consen 147 GRFVQRLRKKAASLPNVRLEEG-TVKSLLE-EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRS 213 (509)
T ss_pred cHHHHHHHHHHhcCCCeEEeee-eHHHHHh-ccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHH
Confidence 4788888776543 34444433 5667765 466788898865 444444 3 57777777777753
No 280
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.39 E-value=11 Score=38.74 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHcCCEEEecceeeEEEecCCCCEEEEEE
Q 018523 105 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 135 (354)
Q Consensus 105 ~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~ 135 (354)
.+++.|+++++++.+++|..+++|++++|++
T Consensus 617 ~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~ 647 (752)
T PRK12778 617 HAKEEGIEFLTLHNPIEYLADEKGWVKQVVL 647 (752)
T ss_pred HHHHcCCEEEecCcceEEEECCCCEEEEEEE
Confidence 4567899999999999998755676766654
No 281
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=71.14 E-value=7.1 Score=37.02 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 101 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 101 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
..-+..++.|.++++++.|+++... +. .|.+.+|+++.++..|+|+..
T Consensus 132 r~~e~Yke~gIe~~~~t~v~~~D~~-~K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 132 RTPEFYKEKGIELILGTSVVKADLA-SK---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred cChhhHhhcCceEEEcceeEEeecc-cc---EEEeCCCceeecceEEEeecC
Confidence 3334567889999999999999984 33 488899999999999998877
No 282
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=71.00 E-value=15 Score=37.05 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=36.7
Q ss_pred chHHHHHHH-HHcCCEEEecceeeEEEecCCCCEEEEEEcC-------C--------eEEEcCEEEEccChh
Q 018523 98 LCLPIVEHI-QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-------G--------NVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l-~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-------g--------~~~~ad~VI~a~p~~ 153 (354)
+.+.+.+.+ ++.|++|++++.|++|..++++....|.+.+ + +++++|.||+++...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 344455544 4689999999999999875333211244321 1 268999999988763
No 283
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=70.77 E-value=12 Score=35.48 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHcCCEEEecceeeEEEecCCCCEEEEEEc-CCeEEE--cCEEEEccCh
Q 018523 106 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVID--GDAYVFATPV 152 (354)
Q Consensus 106 l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-~g~~~~--ad~VI~a~p~ 152 (354)
+.+.|.+++++++|++|..+ ++.+. +... ++++++ +|+||+|+..
T Consensus 54 ~~~~gv~~~~~~~V~~id~~-~~~v~-~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDE-RQTVV-VRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred HHhcCCeEEecCEEEEEECC-CCEEE-EEECCCCCEEecCCCEEEECCCC
Confidence 36779999999999999873 44342 3332 245677 9999998876
No 284
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=70.58 E-value=0.15 Score=42.62 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=53.3
Q ss_pred HHHHHHhhhccCCcccccHHHHHHHH------HHHhhccCCceeeeecCCCcccchHHHHHHHHHcCCEEEecceeeEEE
Q 018523 50 VFIAMSKALNFINPDELSMQCILIAL------NRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIE 123 (354)
Q Consensus 50 ~~~~~~~~~~~~~~~~~sa~~~~~~~------~~~~~~~~g~~~~~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~ 123 (354)
++.++....||.+|+++++..+.+.= .+++. ..-.++|++|+ ..+++.|. ...+.+|++++....+.
T Consensus 2 ~f~~YT~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~---d~yQgiP~~GY-T~~fe~mL---~h~~I~v~l~td~~~~~ 74 (204)
T PF03275_consen 2 FFKGYTKKQWGVDPEELDASVIKRVPVRFSYDDRYFN---DKYQGIPKDGY-TKMFENML---DHPNIEVRLNTDFFDII 74 (204)
T ss_dssp HTHHHHHHHHTSSGGGSBCCCCSCS-BBSSS--BS-----SSEEEEETTHH-HHHHHHHC----STTEEEECS--GGGCH
T ss_pred ccCccCHHHcCCChHHCCHHHhcCCceeeCCCCcccc---ChhhhCchhCH-HHHHHHHh---CCCceEEEcCCCHHHhh
Confidence 66788888999999999984332210 01111 11247899998 56666664 34578999998665444
Q ss_pred ecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh
Q 018523 124 LNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 157 (354)
Q Consensus 124 ~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ 157 (354)
. .+....++.||.|.|+..+-.
T Consensus 75 ~------------~~~~~~~~~viyTG~iDe~F~ 96 (204)
T PF03275_consen 75 E------------FGGEPYADKVIYTGPIDEYFD 96 (204)
T ss_dssp H------------HHCCCTEEEEEE-S-HHHHTT
T ss_pred c------------ccccccCCeEEEeCCHHHHhC
Confidence 2 011235799999999988855
No 285
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.56 E-value=15 Score=36.00 Aligned_cols=51 Identities=8% Similarity=0.182 Sum_probs=37.0
Q ss_pred HHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcC---C--eEEEcCEEEEccCh
Q 018523 101 PIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 152 (354)
Q Consensus 101 ~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 152 (354)
.+.+.+.+ .|+++++++.|++|..+ ++++++|++.+ | +++.+|.|++++..
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 34445554 58999999999999863 45666666643 3 35889999998765
No 286
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=70.54 E-value=4.3 Score=38.27 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+.+.++|||.+||..... .++..|..+|..+|+.|+..++
T Consensus 445 ~~t~i~gLy~aGdGAG~a--rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGAGLA--RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEcccccccc--chhHHHhhhhHHHHHHHHHHhc
Confidence 566789999999987754 6899999999999999998765
No 287
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.28 E-value=13 Score=37.35 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=27.8
Q ss_pred CCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 298 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+..+++|.+||-+.+. ..+..|+..|+.||..|...+.
T Consensus 598 Ts~~gVfA~GD~~~g~--~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVHGA--DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCCCc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888876542 4567788888888888887764
No 288
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.77 E-value=6 Score=39.83 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=26.0
Q ss_pred HHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhh
Q 018523 102 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 157 (354)
Q Consensus 102 l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ 157 (354)
..+.+++.|++++++++|.. + +++.+ ....+|+||+++.......
T Consensus 366 ~~~~~~~~Gv~~~~~~~v~~-----~-----~~~~~-l~~~~DaV~latGa~~~~~ 410 (639)
T PRK12809 366 RREIFTAMGIDFHLNCEIGR-----D-----ITFSD-LTSEYDAVFIGVGTYGMMR 410 (639)
T ss_pred HHHHHHHCCeEEEcCCccCC-----c-----CCHHH-HHhcCCEEEEeCCCCCCCC
Confidence 34455667888888876631 0 11111 1235899999888755433
No 289
>PRK13984 putative oxidoreductase; Provisional
Probab=69.13 E-value=6.3 Score=39.37 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+++|.+||-+.+ ..+..|+..|+.||..|.+.|.
T Consensus 564 ~~Ts~~gVfAaGD~~~~---~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG---PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc---hHHHHHHHHHHHHHHHHHHHhc
Confidence 46778999999998764 3566799999999999998874
No 290
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=68.71 E-value=6.1 Score=34.72 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=29.6
Q ss_pred CCceEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 018523 300 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~--~---~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+||||.+|=.....+ | +..-+-+.||++||+.|++.++.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 589999996554222 1 35567788999999999999864
No 291
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=68.61 E-value=6.3 Score=41.55 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=34.5
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
..|..++||.+||-+.+. ..+.-|+..|+.||..|...++.
T Consensus 588 ~~Ts~pgVFAaGD~~~G~--~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 588 QRTSIKGVYSGGDAARGG--STAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CccCCCCEEEEEcCCCCh--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999988653 47889999999999999988764
No 292
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=68.56 E-value=7.1 Score=37.50 Aligned_cols=40 Identities=30% Similarity=0.333 Sum_probs=32.6
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+++|.+||-..+ +..+..|+..|..||..|...+.
T Consensus 413 ~~Ts~~~VfA~GD~~~~--~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTG--AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCCC--chHHHHHHHHHHHHHHHHHHHHh
Confidence 45667999999997753 24678899999999999988874
No 293
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=67.53 E-value=17 Score=33.45 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEc------------------C--CeEEEcCEEEEccCh
Q 018523 100 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT------------------N--GNVIDGDAYVFATPV 152 (354)
Q Consensus 100 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~------------------~--g~~~~ad~VI~a~p~ 152 (354)
..+.+.+++.|.++++++.|++|+.+ +++..|++. + ++++.+|.||+++..
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 44556678889999999999998753 334344431 1 235778888877654
No 294
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=67.47 E-value=7.7 Score=37.59 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+|||.+||-+.+. ..+..|+..|+.||..|...+.
T Consensus 440 ~~Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999977542 4677799999999999998874
No 295
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=66.48 E-value=8.7 Score=40.90 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
.++..+|||.+||-+.+. ..+..|+..|+.||..|...+..
T Consensus 716 ~~Ts~pgVFAaGDv~~G~--~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTGG--ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCCCc--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 467789999999987642 57889999999999999988763
No 296
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.44 E-value=13 Score=34.00 Aligned_cols=62 Identities=27% Similarity=0.294 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh-hhHhhh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQ 158 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~l 158 (354)
+.+.+.+.+.++..|.+++.++.|+++.+..+|-. .+....|....+|.++.|+.- +..+.|
T Consensus 230 ~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L 292 (478)
T KOG0405|consen 230 EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGL 292 (478)
T ss_pred HHHHHHHHHHhhhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccc
Confidence 45566677788888999999999999998766633 245556655569999998865 344443
No 297
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=66.14 E-value=16 Score=35.04 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=46.4
Q ss_pred eecCCCcccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEEEcCC----eEEEcCEEEEccCh
Q 018523 89 FLDGNPPERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 152 (354)
Q Consensus 89 ~~~Gg~~~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~ 152 (354)
...|..+..+..+|.+.+++ .+.+|+-++.+.+|..+++..+.||.+.+. .++.+++||+|+.-
T Consensus 126 H~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 126 HAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 34444457788888888775 689999999999999854423447776432 46789999997643
No 298
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=65.99 E-value=15 Score=37.12 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=32.9
Q ss_pred EEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhh
Q 018523 112 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 154 (354)
Q Consensus 112 ~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 154 (354)
.++.+++|++|+.+ ++.|+ |++.+|+++++|.||.|-..+.
T Consensus 208 ~i~~g~~V~~I~~~-~d~Vt-V~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 208 VIRNESNVVDFEDS-GDKVT-VVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCCEEEEEEEe-CCEEE-EEECCCCEEEcCEEEECCCCCc
Confidence 47889999999975 44464 8888888899999999877644
No 299
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=65.79 E-value=7.1 Score=34.24 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=28.7
Q ss_pred CCceEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhh
Q 018523 300 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~--~---~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+||||.||=.....+ | +..-+-+.||++||+.|++.++
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 689999997654222 2 3556778899999999998863
No 300
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=65.77 E-value=19 Score=33.76 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=26.6
Q ss_pred CCCCC-CCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 295 LQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 295 ~~~~~-~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++. ++||||||+-.... |.+.|..+|..|+..+...+
T Consensus 349 ~l~~k~~~~lf~AGqi~G~~---Gy~eaaa~G~~ag~na~~~~ 388 (392)
T PF01134_consen 349 TLETKKIPGLFFAGQINGTE---GYEEAAAQGLIAGINAARRL 388 (392)
T ss_dssp TSBBSSSBTEEE-GGGGTB----SHHHHHHHHHHHHHHHHHHH
T ss_pred ceEECCCCCceECCCCcchh---HHHHHHHHHHHHHHHHHHHH
Confidence 33443 79999999977763 56666679999987776554
No 301
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=65.32 E-value=10 Score=34.90 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
++..+++|.+||-+.. +..+..|+..|..||..|.+.+
T Consensus 312 ~t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 312 MTSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ccCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999997763 2568889999999999998776
No 302
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=64.98 E-value=10 Score=34.91 Aligned_cols=45 Identities=31% Similarity=0.398 Sum_probs=29.3
Q ss_pred HcCCEEEecceeeEEEecCCC--CEEEEEEc----CCeEEEcCEEEEccCh
Q 018523 108 SLGGEVRLNSRVQKIELNDDG--TVKNFLLT----NGNVIDGDAYVFATPV 152 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g--~v~~V~~~----~g~~~~ad~VI~a~p~ 152 (354)
+.+..++++++|++|....++ ....|++. +++++.|++||+++..
T Consensus 107 ~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 107 QLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp CGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred hCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 355569999999999986443 12246663 3468999999997763
No 303
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=64.23 E-value=19 Score=38.38 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.4
Q ss_pred HHHHcCCEEEecceeeEEEecCCCCEEEEEEc-----------------CC--eEEEcCEEEEccCh
Q 018523 105 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------------NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 105 ~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 152 (354)
.+++.|+++++++.+++|..+++|++++|++. +| .++.+|.||+++..
T Consensus 618 ~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 618 HAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 45677999999999999987567777666542 12 25899999999865
No 304
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=64.20 E-value=8.2 Score=35.99 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCCceEEeeccccCCCC--C-chhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYL--A-SMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~--~-~~~gAi~sG~~aa~~il~~~ 336 (354)
-++||||||+-.+-..+ + .+.-|..||+.|++.+..-+
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 47999999996653211 2 57889999999998876543
No 305
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.11 E-value=17 Score=34.63 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.4
Q ss_pred HHcCCEEEecceeeEEEecCCCCEEEEEEcC-Ce--EEEcCEEEEccChh
Q 018523 107 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 153 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 153 (354)
++.|.+++++++|++|..+ ++.| .+...+ ++ ++.+|++|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE-RQTV-TVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECC-CCEE-EEEECCCCcEEeeecCEEEECCCCC
Confidence 4568999999999999974 4433 233322 22 46899999988764
No 306
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=63.84 E-value=9.3 Score=37.83 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
..+..+|+|.+||-+.+ +..+..|+..|+.||..|...+..
T Consensus 405 ~~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 405 MMTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred ccCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHcC
Confidence 34667999999997763 257889999999999999888863
No 307
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=63.77 E-value=9.8 Score=39.16 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+|||.+||-..+. ..+..|+..|+.||..|.+.+.
T Consensus 711 ~~Ts~~gVfA~GD~~~g~--~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 711 MQSSIPGIYAGGDIVRGG--ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCCEEEeCCccCCc--HHHHHHHHHHHHHHHHHHHHhc
Confidence 356779999999987642 5788899999999999988774
No 308
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=63.69 E-value=7.5 Score=37.36 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCCCceEEeeccccC-----CCC--CchhHHHHHHHHHHHHHHHHhhhH
Q 018523 297 RSPVEGFYLAGDYTKQ-----KYL--ASMEGAVLSGKLCAQAIVQDYVLL 339 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~-----~~~--~~~~gAi~sG~~aa~~il~~~~~~ 339 (354)
.+|++|||-||+.+.+ .|+ .++..|+.+|++|++.+.+....+
T Consensus 415 g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~~ 464 (466)
T PRK08274 415 GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQHE 464 (466)
T ss_pred CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhhc
Confidence 4589999999986543 122 356778999999999998765443
No 309
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=62.81 E-value=7 Score=33.32 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.4
Q ss_pred CCceEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 018523 300 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~--~---~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+||||+||-.+.--+ | +..-|-+.||+.||+.|++.|..
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 589999997654222 1 35567889999999999998864
No 310
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=62.09 E-value=28 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
..+||||||+-++.. |.+-|..+|..|+..+...+
T Consensus 329 ~~~~l~~AGqi~g~~---Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 329 KRPNLFFAGQITGVE---GYVESAASGLLAGINAARLA 363 (436)
T ss_pred CCCCEEeeeeecCch---HHHHHHHHHHHHHHHHHHHh
Confidence 468999999987653 45567789999987776554
No 311
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=61.84 E-value=11 Score=38.01 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+|+|.+||-+.+. ..+..|+..|..||..|...+.
T Consensus 462 ~~Ts~pgVfA~GDv~~g~--~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTGA--DIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CcCCCCCEEEcCCcCCCc--hHHHHHHHHHHHHHHHHHHHHc
Confidence 456779999999977542 4678899999999999998885
No 312
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=61.76 E-value=17 Score=34.43 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCCCceEEeeccccCC---CCCchhHHHHHHHHHHHHHHHHhh
Q 018523 298 SPVEGFYLAGDYTKQK---YLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~---~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
+..+|+|.+||..... .|....-|+..|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 4679999999987632 234556789999999999988873
No 313
>PRK10262 thioredoxin reductase; Provisional
Probab=60.68 E-value=7.4 Score=35.27 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
.++..+|+|.+||-+...+ ..+-.|+-.|..||..|.+.+..
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHh
Confidence 4677899999999886433 34556889999999999888743
No 314
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=60.20 E-value=30 Score=36.47 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=39.3
Q ss_pred ccchHHHHHHHHHc----CCEEEecceeeEEEecCCCCEEEEEE---cCCe--EEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSL----GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~----g~~i~~~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 152 (354)
..+...|.+.+.+. ++++..++.++++..+ +|+|.||.. .+|+ .+.|+.||+|+.-
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEee-CCEEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 46777887777654 4566666666787764 677878764 3464 4789999998765
No 315
>PRK13984 putative oxidoreductase; Provisional
Probab=60.05 E-value=24 Score=35.21 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=32.7
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEc--------CC-----------eEEEcCEEEEccChh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLT--------NG-----------NVIDGDAYVFATPVD 153 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--------~g-----------~~~~ad~VI~a~p~~ 153 (354)
+.|++|++++.+++|.. +++++++|++. +| +++.+|.||+++...
T Consensus 474 ~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 57999999999988875 45666656542 12 368999999997663
No 316
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=59.83 E-value=33 Score=34.02 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=33.2
Q ss_pred HHHcCCEEEecceeeEEEecCCCCEEEEEE---------c-------CC--eEEEcCEEEEccChh
Q 018523 106 IQSLGGEVRLNSRVQKIELNDDGTVKNFLL---------T-------NG--NVIDGDAYVFATPVD 153 (354)
Q Consensus 106 l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~---------~-------~g--~~~~ad~VI~a~p~~ 153 (354)
..+.|++|++++.+++|..++++.+ +|++ . +| .++.+|.||+++...
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 3467999999999999987545543 3322 1 12 368999999998753
No 317
>PRK06116 glutathione reductase; Validated
Probab=59.19 E-value=15 Score=35.12 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.5
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+.. +....-|+..|..+|+.|+.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~--~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 290 YQNTNVPGIYAVGDVTGR--VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCcCCCCEEEEeecCCC--cCcHHHHHHHHHHHHHHHhC
Confidence 346778999999997753 24678899999999999864
No 318
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=59.00 E-value=16 Score=35.07 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.4
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.++..++||.+||.+... ...+-|+..|+.+|+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~~~--~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKV--ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCc--ccHHHHHHHHHHHHHHHhc
Confidence 466789999999987642 5678899999999999863
No 319
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=58.51 E-value=19 Score=33.56 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=33.0
Q ss_pred chHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 98 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 98 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
|.+.+.+.+ +..|+++++|++|. .++ |++.+|++++||.||-+.+..
T Consensus 91 f~~~l~~~l---~~~i~~~~~V~~v~--~~~----v~l~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 91 FHEGLLQAF---PEGVILGRKAVGLD--ADG----VDLAPGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHhh---cccEEecCEEEEEe--CCE----EEECCCCEEEeeEEEECCCCC
Confidence 444444333 43488899999984 343 444688899999999998865
No 320
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=57.79 E-value=15 Score=38.92 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++..+|||.+||-..+ |..+..|+..|+.||..|+..++
T Consensus 803 lqTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 45677999999997653 36788999999999999988665
No 321
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=57.53 E-value=32 Score=34.30 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCCCC-CCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~-~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~ 335 (354)
.+.+. ++||||||+-.+. .|.+.|..+|..|+-.+...
T Consensus 351 ~le~k~~~gLf~AGqi~Gt---~Gy~eAaa~Gl~Ag~naa~~ 389 (617)
T TIGR00136 351 TLETKLIQGLFFAGQINGT---TGYEEAAAQGLMAGINAALK 389 (617)
T ss_pred hheeCCCCCeEEccccCCc---chHHHHHHHHHHHHHHHHHH
Confidence 34444 7999999995554 46777888898888655443
No 322
>PLN02785 Protein HOTHEAD
Probab=56.63 E-value=25 Score=35.04 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=29.6
Q ss_pred CCCceEEeeccccCCCCC--chhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYLA--SMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~--~~~gAi~sG~~aa~~il~~~ 336 (354)
.++||+.+=.++.+.-|+ ....+++-|+++|+.|+++.
T Consensus 541 GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 541 GVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred ccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 578999998788776543 44567888999999999874
No 323
>PTZ00367 squalene epoxidase; Provisional
Probab=56.62 E-value=2.1e+02 Score=28.41 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCceEEeeccccCCCC---CchhHHHHHHHHHHHHHH
Q 018523 300 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~~---~~~~gAi~sG~~aa~~il 333 (354)
.+|+.+.||..+.-+| +|+.-|+..+..-++.+.
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~ 372 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLT 372 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 3689999998887766 588888888888777764
No 324
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=56.05 E-value=13 Score=37.08 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCCCCceEEeeccccC----CCCC---chhHHHHHHHHHHHHHHHHhhhHHH
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQDYVLLAA 341 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~~---~~~gAi~sG~~aa~~il~~~~~~~~ 341 (354)
..+|++|||-||+...+ .|++ ++-.|+.+|++|++.+.+.....+|
T Consensus 523 ~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~~ 575 (584)
T PRK12835 523 DDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAAA 575 (584)
T ss_pred CCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcCC
Confidence 45689999999987542 2332 3677899999999999877554443
No 325
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.98 E-value=33 Score=33.96 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChh
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
.+.+.+.+.+++.|++++ +++|++|..+ +. ...|.+.+| ++.+++||+|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~-~~-~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFD-GD-IKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEec-CC-EEEEEecCC-EEEEeEEEECCCCc
Confidence 456667667777888885 7889999874 32 224666555 68899999998874
No 326
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=55.73 E-value=18 Score=34.60 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+... ....-|+..|+.+|+.|+.
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRI--NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCccCCCCEEEeeccCCCc--cchhHHHHHHHHHHHHHhc
Confidence 3567789999999988642 4677899999999999874
No 327
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=55.31 E-value=16 Score=36.16 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++++|||-||+-+..+ +. .++-.|+.+|++|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999976422 21 156778999999999887653
No 328
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=55.18 E-value=14 Score=39.12 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=31.8
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++..+|||.+||-..+ |..+..|+..|+.||..|+...
T Consensus 801 ~~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhccc
Confidence 35667999999997643 3688999999999999998653
No 329
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=55.07 E-value=15 Score=33.35 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=37.6
Q ss_pred HHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHH
Q 018523 251 KELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQ 330 (354)
Q Consensus 251 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~ 330 (354)
..+-++.|++. +++.+..-+. .+..|...|.........+ .-++|+|||.-+... +.++.|. +|..|+.
T Consensus 293 krVf~mIPgLe-----NAefvRyGvm--HRNtfinSP~lL~~tl~lk-~~p~l~fAGQitG~E--GYveSaA-~Gllag~ 361 (439)
T COG1206 293 KRVFRMIPGLE-----NAEFVRYGVM--HRNTFINSPKLLDPTLQLK-KRPNLFFAGQITGVE--GYVESAA-SGLLAGI 361 (439)
T ss_pred hhhhhhcCCcc-----hhhhhhccce--ecccccCChhhhhHHhhcc-cCCCcEEeeeeecch--hhhHHhh-hhHHHhh
Confidence 45667888875 3344433332 2344555554311000111 237999999988765 5666653 5555543
Q ss_pred H
Q 018523 331 A 331 (354)
Q Consensus 331 ~ 331 (354)
.
T Consensus 362 n 362 (439)
T COG1206 362 N 362 (439)
T ss_pred H
Confidence 3
No 330
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=54.62 E-value=18 Score=36.22 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=29.7
Q ss_pred CCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 297 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++++|||-||+-...+ +. .++-.|+..|++|++.+.+..
T Consensus 382 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 382 DAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 36899999999976422 21 156788999999999887653
No 331
>PLN02661 Putative thiazole synthesis
Probab=54.26 E-value=15 Score=33.90 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCceEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 018523 300 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~--~---~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+||||.+|=.+.-.+ | +..-+-+.||++||+.|++.++.
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 689999997654222 1 35667889999999999999974
No 332
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=53.01 E-value=20 Score=36.09 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++++|||-||+-...+ +. .++-.|+..|++|++.+.+..
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 6899999999975422 21 157778999999999887653
No 333
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=52.89 E-value=18 Score=36.00 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCCCCCceEEeeccccCC----CCC---chhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQK----YLA---SMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~----~~~---~~~gAi~sG~~aa~~il~~ 335 (354)
..+|++|||-||+.+.+. ||+ ++-.|+.+|++|++.+.+.
T Consensus 520 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 566 (574)
T PRK12842 520 DGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGV 566 (574)
T ss_pred CCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 456899999999765322 332 4677999999999998765
No 334
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=52.60 E-value=22 Score=34.50 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+... ....-|+..|..+|+.|+.
T Consensus 313 ~l~Ts~~~IyA~GDv~~~~--~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 313 FSRTNVPNIYAIGDVTDRV--MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhC
Confidence 4567789999999987642 5778899999999999964
No 335
>PLN02507 glutathione reductase
Probab=52.03 E-value=22 Score=34.66 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=31.0
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+... ....-|...|..+|+.|+.
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~--~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI--NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC--ccHHHHHHHHHHHHHHHcC
Confidence 4567889999999988642 4678899999999999864
No 336
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.73 E-value=21 Score=35.28 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+++..+|||.+||-+.... ..+..|+..|..||..|...+..
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~-~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKEL-RQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred cccCCCCEEEceeccCCCc-chheeHHhhHHHHHHHHHHHHHh
Confidence 4566799999999764322 35677999999999999887754
No 337
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=51.70 E-value=39 Score=32.50 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=30.8
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|+|.+||-+.. + .....|...|..||+.++.
T Consensus 299 ~~~Ts~~~IyA~GD~~~~-~-~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGV-L-PLASVAAMQGRIAMYHALG 336 (466)
T ss_pred CcccCCCCEEEEeeccCC-c-cchhHHHHHHHHHHHHHcC
Confidence 356778999999998764 2 4678899999999998874
No 338
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=51.58 E-value=19 Score=38.31 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 298 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
+..++||.|||-+.. .++..|+.+|..||..|+..++.
T Consensus 436 t~v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCC
Confidence 457899999987654 57888999999999999998875
No 339
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=50.15 E-value=20 Score=33.73 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC------C---------eEEEcCEEEEccC
Q 018523 97 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN------G---------NVIDGDAYVFATP 151 (354)
Q Consensus 97 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~------g---------~~~~ad~VI~a~p 151 (354)
.++.-|.+..++.|++|.-+..+.+|..+++|.|.+|.++| | -.+.|+.-|+|-.
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 56666777778899999999999999999999998888754 2 1466777777643
No 340
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.22 E-value=26 Score=34.78 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCC-CCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSP-VEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~-~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++ ++|||-||+....+ |. .++-.|+..|++|++.+.+..
T Consensus 355 ~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 355 GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3465 99999999976422 21 157788999999999887654
No 341
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.20 E-value=25 Score=35.06 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 297 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++++|||-||+-+..+ +. .++-.|+..|++|++.+.+..
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 46799999999976522 21 156778999999999886653
No 342
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=48.83 E-value=17 Score=36.09 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=31.8
Q ss_pred CCCCCCceEEeeccccC----CCC---CchhHHHHHHHHHHHHHHHHhhhH
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYL---ASMEGAVLSGKLCAQAIVQDYVLL 339 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~---~~~~gAi~sG~~aa~~il~~~~~~ 339 (354)
..+|++|||-||+.+.+ .|+ .++-.|+.+|++|++.+.+...-+
T Consensus 524 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 574 (581)
T PRK06134 524 AGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASGYE 574 (581)
T ss_pred CCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCCcc
Confidence 35689999999975432 232 256778999999999997765443
No 343
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=48.63 E-value=20 Score=35.41 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCCCCCCceEEeeccccC----CCCC---chhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~----~~~~---~~~gAi~sG~~aa~~il~ 334 (354)
....|++|||-||+.+.+ .|++ ++..|+.+|+.|++.+.+
T Consensus 509 ~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 509 DDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 345689999999988642 2332 456789999999998854
No 344
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=48.22 E-value=49 Score=31.90 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.9
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
+++..+++|.+||.+.. +.....|+..|..+|+.|..
T Consensus 306 l~ts~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 306 CQTKERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45667899999998753 24677899999999998753
No 345
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=47.95 E-value=26 Score=33.64 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.++.++|||-+||-+.+. ..-+-|...|+.||+.|+.
T Consensus 298 ~~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 456689999999987763 4678899999999999986
No 346
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=47.87 E-value=18 Score=33.69 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCCCceEEeeccccCC-CCC--chhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YLA--SMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~~--~~~gAi~sG~~aa~~il~~~ 336 (354)
..+|||||||+-++-. |-+ .+.-|..||+.|++.+.+.+
T Consensus 366 k~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 366 KKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred hcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 3578999999866522 212 56779999999999887643
No 347
>PRK14727 putative mercuric reductase; Provisional
Probab=47.75 E-value=23 Score=34.20 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+.. |..+.-|+..|..||..|+.
T Consensus 308 ~~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CeecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 356778999999997753 25678899999999999864
No 348
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=47.73 E-value=23 Score=33.60 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCCCCCceEEeeccccCC-----CC--CchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQK-----YL--ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~-----~~--~~~~gAi~sG~~aa~~il~~ 335 (354)
....|++|||-||+.+.++ |. .++..|+..|+.|++.+.+.
T Consensus 382 ~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 382 NDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 3456899999999864321 21 25677899999999988654
No 349
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.63 E-value=22 Score=35.26 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=28.9
Q ss_pred CCCCCCceEEeeccccC----CCCC---chhHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~~---~~~gAi~sG~~aa~~il 333 (354)
...|++|||-||..+.+ .|++ ++-.|+.+|++|++.+.
T Consensus 518 dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 518 DGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred CCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 45689999999987642 3432 56779999999999875
No 350
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=47.29 E-value=24 Score=34.94 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++++|||-||+....+ +. .++-.|+.+|++|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999965422 21 256778999999999887654
No 351
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=47.04 E-value=27 Score=33.48 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-+... ....-|+..|..||..|..
T Consensus 293 ~~~ts~~~IyA~GD~~~~~--~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNGKP--PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CcccCCCCEEEEEecCCCc--cchhHHHHHHHHHHHHhcC
Confidence 4567789999999987642 4678899999999999975
No 352
>PRK07121 hypothetical protein; Validated
Probab=46.99 E-value=21 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=29.5
Q ss_pred CCCCCCceEEeeccccCC----CC--CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQK----YL--ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~----~~--~~~~gAi~sG~~aa~~il~~ 335 (354)
..+|++|||.||+...+- |+ .++-.|+.+|+.|++.+.+.
T Consensus 445 ~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 445 DGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 346899999999865321 21 35677999999999988654
No 353
>PRK06370 mercuric reductase; Validated
Probab=46.38 E-value=31 Score=33.13 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|+|.+||-+... .....|...|..+|+.|+.
T Consensus 296 ~l~t~~~~IyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGRG--AFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhC
Confidence 3567789999999987642 4667899999999999875
No 354
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=46.19 E-value=26 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 297 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++++|||.||+-...+ +. .++-.|+..|++|++.+.+..
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 45799999999975422 21 257778999999999887653
No 355
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=46.19 E-value=25 Score=34.77 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCCCCCceEEeeccccC----CCC---CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYL---ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~---~~~~gAi~sG~~aa~~il~~ 335 (354)
...|++|||.||..+.+ .|+ .++-.|+.+|++|++.+.+.
T Consensus 503 ~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 503 DGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 45689999999986542 233 25777999999999988654
No 356
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=46.17 E-value=62 Score=31.25 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
+++..+++|.+||.+... ....-|...|..||+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~~--~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRGP--MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCCc--chHHHHHHHHHHHHHHHcC
Confidence 456789999999987632 4677899999999999864
No 357
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.07 E-value=29 Score=34.16 Aligned_cols=41 Identities=7% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCCCCCceEEeeccccCCCC------CchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++++|||-||+.+.+-|+ .++..|+.+|++|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 35889999999996543221 245678999999999987654
No 358
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.80 E-value=35 Score=32.00 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=33.7
Q ss_pred cCCEEEecceeeEEEecCCCCEEEEEEc---CC--eEEEcCEEEEccChh
Q 018523 109 LGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVD 153 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~ 153 (354)
..+.++.+++|+.++..++|++ .+.+. .| ++++.|+||+|+.-.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 3478999999999998777764 35543 23 478899999999875
No 359
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=45.79 E-value=28 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-+.. |.....|+..|..||+.|+.
T Consensus 297 ~~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 297 NYQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred CcccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 346678999999997653 34678899999999999873
No 360
>PRK13748 putative mercuric reductase; Provisional
Probab=45.45 E-value=27 Score=34.45 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+... ..+..|+..|..||..|+.
T Consensus 390 ~~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 390 GMRTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred CcccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 3567789999999987642 5677899999999999863
No 361
>PRK14694 putative mercuric reductase; Provisional
Probab=45.44 E-value=29 Score=33.42 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-+... ..+.-|+..|..||..|+.
T Consensus 297 ~~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 297 HLQTTVSGIYAAGDCTDQP--QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred CcccCCCCEEEEeecCCCc--ccHHHHHHHHHHHHHHhcC
Confidence 3567789999999987642 5778899999999998863
No 362
>PLN02852 ferredoxin-NADP+ reductase
Probab=45.26 E-value=26 Score=34.01 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=32.7
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
.++++|+|.+||-..+.. +-|-.++..|..+|+.|++++..
T Consensus 383 ~T~ipGvyAaGDi~~Gp~-gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 383 ADTEPGLYVVGWLKRGPT-GIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ccCCCCEEEeeeEecCCC-CeeeecHhhHHHHHHHHHHHHHc
Confidence 366899999999776432 36778899999999999998753
No 363
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.14 E-value=31 Score=33.20 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-... +.....|...|..||+.|+.
T Consensus 298 ~~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred CcccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 356778999999998764 24678899999999999864
No 364
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=45.10 E-value=24 Score=34.88 Aligned_cols=39 Identities=26% Similarity=0.565 Sum_probs=28.6
Q ss_pred CCCCCCceEEeecccc------CCC----CCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTK------QKY----LASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~------~~~----~~~~~gAi~sG~~aa~~il~ 334 (354)
.-.|++|||.||+... .++ ..++-.|+.+|+.|++.+.+
T Consensus 500 dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 500 DGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 3468999999999863 111 12467789999999998754
No 365
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.98 E-value=30 Score=34.48 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCCCCCceEEeeccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
.+++++|||-||+-..+.|. .++-.|+..|++|++.+.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 46789999999996532221 24667888999999887654
No 366
>PRK12839 hypothetical protein; Provisional
Probab=44.45 E-value=24 Score=35.00 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=31.2
Q ss_pred CCCCCCceEEeeccccC----CCC---CchhHHHHHHHHHHHHHHHHhh
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYL---ASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~---~~~~gAi~sG~~aa~~il~~~~ 337 (354)
..+|++|||-||+.+.+ .|| .++-.|+.+|+.|++.+.+.-+
T Consensus 521 dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 521 DDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 35689999999986532 233 2567899999999999876543
No 367
>PRK09077 L-aspartate oxidase; Provisional
Probab=44.42 E-value=29 Score=34.09 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++++|||.||+....+ +. .++-.|+..|++|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999975322 21 256778899999999987653
No 368
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.33 E-value=26 Score=34.83 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
+|++|||-||+.+..+ +. .++-.|+.+|++|++.+.+..
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999976422 21 246778999999999886653
No 369
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.15 E-value=33 Score=34.13 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=29.6
Q ss_pred CCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 297 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.++++|||-||+-+..+ ++ .++-.|+.+|++|++.+.+..
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 45799999999976422 21 256778999999999886643
No 370
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=43.54 E-value=31 Score=31.14 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 338 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~~~ 338 (354)
.++|.++|+|.|||-....+. -+..|.-.|..||..+.+.+..
T Consensus 260 ~~~TsvpGifAaGDv~~~~~r-qi~ta~~~G~~Aa~~a~~~l~~ 302 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGR-QIATAAGDGAIAALSAERYLES 302 (305)
T ss_pred CcccCCCCEEEeEeeccCccc-EEeehhhhHHHHHHHHHHHhhh
Confidence 367889999999998886542 5777788888898888777653
No 371
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=43.36 E-value=53 Score=31.31 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 018523 299 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~ 335 (354)
..+||||||.-++.. |-+.|.-+|..|+-.....
T Consensus 328 ~~~~lf~AGQi~G~~---GY~Eaaa~Gl~agina~~~ 361 (433)
T TIGR00137 328 DRQTLFFAGQLTGVE---GYVASTAGGWLAGINAARL 361 (433)
T ss_pred CCCCEEECcccccch---HHHHHHHHHHHHHHHHHHH
Confidence 368999999877764 4444455777777554443
No 372
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.96 E-value=31 Score=33.32 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
+++..+++|.+||-+.. |.....|+..|..||+.|..
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 46778999999997653 24678899999999999864
No 373
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=42.55 E-value=35 Score=34.07 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.7
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++++|||-||+-...+ +. .++-.|+..|++|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999965422 21 245778999999999876543
No 374
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=41.91 E-value=37 Score=32.59 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-+... ....-|...|..||..|+.
T Consensus 291 ~~~Ts~~~VyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGGL--QLEYVAAKEGVVAAENALG 328 (463)
T ss_pred CccCCCCCEEEeeecCCCc--ccHhHHHHHHHHHHHHhcC
Confidence 3567789999999987652 4567899999999999874
No 375
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.81 E-value=88 Score=33.25 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHcCCEEEecceeeEEEecC-CCCEEEEEEc-----------------CC--eEEEcCEEEEccCh
Q 018523 107 QSLGGEVRLNSRVQKIELND-DGTVKNFLLT-----------------NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I~~~~-~g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 152 (354)
.+.|++++.++.+++|..++ ++++++|++. +| .++.+|.||+|+..
T Consensus 495 ~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 495 LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 36799999999999998653 3355544331 12 35899999999875
No 376
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.75 E-value=76 Score=30.78 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=29.1
Q ss_pred cCCE-EEecceeeEEEecCCCCEEEEEEc--------CC-----------eEEEcCEEEEccCh
Q 018523 109 LGGE-VRLNSRVQKIELNDDGTVKNFLLT--------NG-----------NVIDGDAYVFATPV 152 (354)
Q Consensus 109 ~g~~-i~~~~~V~~I~~~~~g~v~~V~~~--------~g-----------~~~~ad~VI~a~p~ 152 (354)
.|+. +++++.+++|..+++|++++|++. +| .++.+|.||+++..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3543 457888888876444667666531 23 26899999998874
No 377
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=41.50 E-value=84 Score=28.82 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHH---cC-CEEEecceeeEEEecCCCCEEEEEEc--------CC----------eEEEcCEEEEccC
Q 018523 96 ERLCLPIVEHIQS---LG-GEVRLNSRVQKIELNDDGTVKNFLLT--------NG----------NVIDGDAYVFATP 151 (354)
Q Consensus 96 ~~l~~~l~~~l~~---~g-~~i~~~~~V~~I~~~~~g~v~~V~~~--------~g----------~~~~ad~VI~a~p 151 (354)
-.+.+++.+.+++ .| +++++.++|.++... +++|++|.-. .| -+++|.+||++..
T Consensus 149 Pgvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 149 PGVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred cchhhHHHHHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 4678888888876 34 788999999999984 6777776521 11 1467889998653
No 378
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=41.46 E-value=22 Score=33.60 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCceEEeeccccCCCC--C-chhHHHHHHHHHHH
Q 018523 299 PVEGFYLAGDYTKQKYL--A-SMEGAVLSGKLCAQ 330 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~--~-~~~gAi~sG~~aa~ 330 (354)
.++||||||+-.+-..+ + .+.-|..||+.|++
T Consensus 374 ~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 374 LVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 47999999997652211 2 57889999999986
No 379
>PLN02546 glutathione reductase
Probab=41.08 E-value=36 Score=33.67 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+... ....-|+..|..+|+.|+.
T Consensus 375 ~l~Ts~p~IYAaGDv~~~~--~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDRI--NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred CceeCCCCEEEeeccCCCc--ccHHHHHHHHHHHHHHHcC
Confidence 4567789999999988642 4678899999999998864
No 380
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=41.01 E-value=35 Score=33.13 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=30.2
Q ss_pred CCCCCCCceEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~-~----~--~~~~gAi~sG~~aa~~il~~ 335 (354)
..+++++|||-||+....+ + . .++..|+..|++|++.+.+.
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999975322 2 1 25677899999999998764
No 381
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=40.95 E-value=31 Score=33.63 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCCCCCceEEeeccccCCC----C--CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKY----L--ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~----~--~~~~gAi~sG~~aa~~il~~ 335 (354)
..+|++|||-||+.+.+-| . .++-.|+.+|++|++.+.+.
T Consensus 457 ~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 457 DGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred CCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 3468999999999754322 1 25677899999999988764
No 382
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.93 E-value=40 Score=33.44 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++++|||-||+-...+ +. .++-.|+..|++|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 5799999999965421 21 245778999999998876543
No 383
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=40.76 E-value=39 Score=33.66 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++++|||-||+-...+ +. .++-.|+..|++|++.+.+..
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999865422 11 256778899999999887654
No 384
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=40.58 E-value=24 Score=34.51 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=29.1
Q ss_pred CCCCCCceEEeecccc----CCCCC---chhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~----~~~~~---~~~gAi~sG~~aa~~il~ 334 (354)
...|++|||-||+.+. ..|++ ++..|+..|+.|++.+..
T Consensus 465 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 465 DGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 3468999999999753 23432 368899999999998743
No 385
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=40.56 E-value=35 Score=33.96 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCCCCceEEeeccccC----CCCC---chhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQ----KYLA---SMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~----~~~~---~~~gAi~sG~~aa~~il~~ 335 (354)
..+|++|||-||..+.+ .|++ .+..|+.+|+.|++.+.+.
T Consensus 525 dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 525 DGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 35689999999976542 2321 3566899999999988655
No 386
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=40.40 E-value=39 Score=33.29 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=34.3
Q ss_pred HHcCCEEEecceeeEEEecCCCCEEEEEEc--CC---eE-EEcCEEEEccChhhHhhh
Q 018523 107 QSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG---NV-IDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 107 ~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~--~g---~~-~~ad~VI~a~p~~~l~~l 158 (354)
+..+.+|++++.|++|..+ ++++++|++. ++ +. +.++.||++...-....|
T Consensus 214 ~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 214 KRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred cCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 3456899999999999995 5556566654 33 22 456788887666444444
No 387
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=40.36 E-value=40 Score=33.59 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 295 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
..+++++|||-||+....+ +. .++-.|+..|++|++.+.+..
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 3457899999999865322 21 256778999999999887653
No 388
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=40.10 E-value=42 Score=31.65 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=31.9
Q ss_pred cCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccCh
Q 018523 109 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 109 ~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
-|+-+..+.+|.+|.. ++. .|.++||.++.+|.++.|+..
T Consensus 270 GGvAvl~G~kvvkid~-~d~---~V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 270 GGVAVLRGRKVVKIDE-EDK---KVILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred CceEEEeccceEEeec-ccC---eEEecCCcEeehhheeeecCc
Confidence 3578999999999987 454 378999999999987776654
No 389
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=40.02 E-value=40 Score=32.34 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+.+. ....-|...|+.+|+.|+.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 290 YGRTSARGVWALGDVSSPY--QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CcccCCCCEEEeecccCcc--cChhHHHHHHHHHHHHhcC
Confidence 3567789999999987642 3566788999999999874
No 390
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.87 E-value=38 Score=32.64 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+.. |....-|...|..+|+.|+.
T Consensus 300 ~~~Ts~~~IyA~GD~~~~--~~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 300 HHRTSVPGVWVIGDVTSG--PMLAHKAEDEAVACIERIAG 337 (466)
T ss_pred CeecCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 356778999999998764 24678899999999999864
No 391
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.41 E-value=41 Score=32.28 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+++|.+||-+.. +.....|+..|..+|+.|..
T Consensus 296 ~~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 296 QLRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 345778999999998753 25678899999999999974
No 392
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=39.05 E-value=63 Score=30.48 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCCC-CCCceEEeeccccCCC----CCchhHHHHHHHHHHHHHHHHhh
Q 018523 295 LQRS-PVEGFYLAGDYTKQKY----LASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 295 ~~~~-~~~~L~~aG~~~~~~~----~~~~~gAi~sG~~aa~~il~~~~ 337 (354)
.++. ..+++|.+||.....+ |+.-..|.+.|.-+|+.|.+.+.
T Consensus 285 ~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 285 TLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 3443 4689999999876443 56788899999999999988874
No 393
>PRK07846 mycothione reductase; Reviewed
Probab=38.86 E-value=46 Score=31.90 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=29.8
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|+|.+||-+.+. .....|...|..+|+.|+.
T Consensus 287 ~~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred CcccCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHcC
Confidence 3567789999999987642 4567788999999998864
No 394
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.25 E-value=39 Score=33.98 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCCCCceEEeeccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 018523 297 RSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
+++++|||.||+...+-|. .++-.|+..|++|++.+.+.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~ 446 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADY 446 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHH
Confidence 4789999999986542221 25677899999999887654
No 395
>PRK08071 L-aspartate oxidase; Provisional
Probab=38.25 E-value=42 Score=32.80 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=29.0
Q ss_pred CCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
.+++++|||-||+-...+ +. .++-.|+..|++|++.+...
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999975422 11 14667888999999988654
No 396
>PRK08275 putative oxidoreductase; Provisional
Probab=37.72 E-value=40 Score=33.34 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
..++.++|||.||+....++ .++..|+..|..|++.+.+..
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~-~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH-NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999654332 467778889999998876543
No 397
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=37.61 E-value=46 Score=31.88 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=30.3
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~ 335 (354)
+++..+++|.+||.... +.....|+..|..+|+.|...
T Consensus 295 l~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 295 MRTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcCC
Confidence 45667999999998754 246788999999999998753
No 398
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=37.27 E-value=55 Score=31.72 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=30.1
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+... +....-|+..|+.+|+.|+.
T Consensus 305 ~~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 305 EEQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 3556789999999987532 23567799999999999874
No 399
>PRK07512 L-aspartate oxidase; Provisional
Probab=37.05 E-value=46 Score=32.52 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 296 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
.+++++|||.||+....+ +. .++-.|+..|++|++.+.+..
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999975322 21 145667889999999887653
No 400
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.01 E-value=51 Score=30.36 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=51.1
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecC-CCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCc
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 161 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~ 161 (354)
..|..+|.+.+++..++|....++++++... .+....|++.+|-...++.||+++...--.--+|.
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCc
Confidence 4899999999999999999999999999731 22244699999999999999998876433222554
No 401
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=37.00 E-value=84 Score=31.47 Aligned_cols=67 Identities=16% Similarity=0.375 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCccccccccceeEEEEEEeCCCc-cccC-CCCCCCCCCCCC-CCCceEEeeccccCCCCCchhHHHHHH
Q 018523 249 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKTI-PNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLSG 325 (354)
Q Consensus 249 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~g~~~~~~~~~~-~~~~L~~aG~~~~~~~~~~~~gAi~sG 325 (354)
++..+-+..|++. +..+.+..++. |.+. |.+ ..+.+.+ .++||||||.-.+.. |-|.|.-+|
T Consensus 317 ~Q~~~~r~ipGle----------~a~i~r~gy~ieyd~i~p~~--L~~~Le~k~~~~lf~AGQinGt~---GYeEaaaqG 381 (618)
T PRK05192 317 VQLEMLRSIPGLE----------NAEILRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQINGTT---GYEEAAAQG 381 (618)
T ss_pred HHHHHHhcCcCcc----------ceeEeecccceeecccChhh--cchhheecCCCCeEECcccCCCh---HHHHHHHHH
Confidence 4556677888874 23344433332 3322 322 2334443 368999999866653 455555566
Q ss_pred HHHHH
Q 018523 326 KLCAQ 330 (354)
Q Consensus 326 ~~aa~ 330 (354)
..|+-
T Consensus 382 l~Agi 386 (618)
T PRK05192 382 LIAGI 386 (618)
T ss_pred HHHHH
Confidence 66653
No 402
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.77 E-value=41 Score=33.57 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=28.7
Q ss_pred CCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 018523 298 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
++++|||-||+-...+ +. .++-.|+..|++|++.+.+.
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999999976422 21 25677899999999988754
No 403
>PRK06175 L-aspartate oxidase; Provisional
Probab=36.50 E-value=44 Score=31.85 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCCCCCceEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~-~----~--~~~~gAi~sG~~aa~~il~~ 335 (354)
.+++++|||-||+-+..+ | . .++-.++..|++|++.+...
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999975422 2 1 24677899999999988653
No 404
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=36.01 E-value=60 Score=29.80 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred eecCCCcccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcC---C--eEEEcCEEEEccChhhHh
Q 018523 89 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPVDILK 156 (354)
Q Consensus 89 ~~~Gg~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~~~l~ 156 (354)
++--|+.+.+++.+++.+++.|..+.-.+.+++|++.++|+. .|...+ + .+-.+|.|+.|+.-..+.
T Consensus 231 I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 231 ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccch
Confidence 343455678889999999999999999988899998777764 355432 2 245789999998764443
No 405
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.56 E-value=86 Score=29.51 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCEEEecceeeEEEecCCCCEEE--EEEcCCeEEEcCEEEEccCh
Q 018523 110 GGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 110 g~~i~~~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p~ 152 (354)
--.++++++|+.|..-+...+.. |++.++.+++|+.+|+++..
T Consensus 111 l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 111 LPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred CCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 36999999999773321111222 56667789999999987643
No 406
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.30 E-value=3.4e+02 Score=24.19 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCCCCceEEeeccccCCCC---C
Q 018523 240 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYL---A 316 (354)
Q Consensus 240 ~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~L~~aG~~~~~~~~---~ 316 (354)
.+..++.+.+++.+...+|..-.+.+.. .++.. .....|.+ ..|......+|+.+.||.....+| +
T Consensus 80 ~~~g~l~~yl~~~v~P~LP~~lr~~f~~--al~~~-------rirsMPn~--~lp~~~~~~~G~vllGDA~nmrHPLTGg 148 (276)
T PF08491_consen 80 VSNGELKEYLREVVAPQLPEELRPSFEK--ALEDG-------RIRSMPNS--FLPASPNWKPGVVLLGDAANMRHPLTGG 148 (276)
T ss_pred ccchHHHHHHHHHHHhhchHHHHHHHHH--HhccC-------Ccceeccc--ccCCCCCCCCCEEEEehhhcCcCCcccc
Confidence 3566777778877777776532111110 11111 11123332 222223334899999999886665 6
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 018523 317 SMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 317 ~~~gAi~sG~~aa~~il~~ 335 (354)
||.-|+......++.+...
T Consensus 149 GMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 149 GMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred chhhHHHHHHHHHHHHhhh
Confidence 8888888887777766443
No 407
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=33.89 E-value=53 Score=31.51 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
+++..+|+|.+||-+.+ +....-|+..|..||..+..
T Consensus 293 ~~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 MQTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred eecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 45668999999998753 24677899999999998763
No 408
>PLN02815 L-aspartate oxidase
Probab=32.70 E-value=65 Score=32.21 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
..+++++|||-||+-...+ +. .++-.|+..|++|++.+.+.
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999976422 21 25677889999999988654
No 409
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=32.44 E-value=59 Score=30.93 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=28.5
Q ss_pred CCCCceEEeeccccCCCC----CchhHHHHHHHHHHHHHHHHh
Q 018523 298 SPVEGFYLAGDYTKQKYL----ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 298 ~~~~~L~~aG~~~~~~~~----~~~~gAi~sG~~aa~~il~~~ 336 (354)
+.++|||.+|+-+.+-.+ .+--=|+.||..|+++|++..
T Consensus 378 ~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 378 PVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred eeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 447999999997775332 122238999999999998654
No 410
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=32.16 E-value=83 Score=30.89 Aligned_cols=67 Identities=13% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCccccccccceeEEEEEEeCCCc-cccCCCCCCCCCCCCC-CCCceEEeeccccCCCCCchhHHHHHHH
Q 018523 249 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLSGK 326 (354)
Q Consensus 249 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~-~~~~L~~aG~~~~~~~~~~~~gAi~sG~ 326 (354)
++.++-+-.|++. ...+.+..++. |.+.... ...|.+.+ -++||||||.-=+. .|-|.|.-.|.
T Consensus 317 VQ~~~irsipGlE----------na~i~rpgYAIEYD~v~p~-qL~~tLEtK~I~GLf~AGQINGT---tGYEEAAaQGl 382 (621)
T COG0445 317 VQEQIIRSIPGLE----------NAEILRPGYAIEYDYVDPR-QLKPTLETKKIKGLFFAGQINGT---TGYEEAAAQGL 382 (621)
T ss_pred HHHHHHHhCcccc----------cceeeccceeeeecccChh-hcccchhhceecceEEcccccCC---chhHHHHhhhH
Confidence 5566777788874 33455544443 4333211 12445554 37999999974333 45666555555
Q ss_pred HHH
Q 018523 327 LCA 329 (354)
Q Consensus 327 ~aa 329 (354)
.|.
T Consensus 383 iAG 385 (621)
T COG0445 383 IAG 385 (621)
T ss_pred HHH
Confidence 444
No 411
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.65 E-value=1.5e+02 Score=31.72 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=29.3
Q ss_pred HcCCEEEecceeeEEEecCCCCEE----------------EEEEcCCeEEEcCEEEEccChh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVK----------------NFLLTNGNVIDGDAYVFATPVD 153 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~----------------~V~~~~g~~~~ad~VI~a~p~~ 153 (354)
+.|++++.++.+++|.. +|+++ .+...++.++.+|.||++++..
T Consensus 719 eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 719 EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 46889999988888863 23321 1122233578999999998764
No 412
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=31.54 E-value=79 Score=31.72 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 294 PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 294 ~~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
...++.++|||-|||-...+......+++..|..+++.+.+.+
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999997653222345667778888888776654
No 413
>PTZ00052 thioredoxin reductase; Provisional
Probab=31.19 E-value=71 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 297 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
++..++||.+||-+.. .|....-|+..|..+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~~-~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEG-RPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCC-CcccHHHHHHHHHHHHHHHhC
Confidence 5668999999997653 234678899999999999864
No 414
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.86 E-value=1.4e+02 Score=28.69 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=38.5
Q ss_pred chHHHHHHHHHcC--CEEEecceeeEEEecCCCCEEEEEEcCC----eEEEcCEEEEccChhhHhh
Q 018523 98 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDILKL 157 (354)
Q Consensus 98 l~~~l~~~l~~~g--~~i~~~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~~l~~ 157 (354)
+.+-|....+..+ -.|+++++|..|....+|+. .|.+.++ +...+|.||+++.-.....
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCC
Confidence 4444444444434 48999999999998542544 4666543 3678899999887774333
No 415
>PRK08401 L-aspartate oxidase; Provisional
Probab=30.52 E-value=68 Score=30.89 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCCCCCceEEeecccc-CCCC------CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTK-QKYL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~-~~~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
.+++++|||-||+.+. +-+. .++-.++..|++|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999764 2221 13455788999999988653
No 416
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=30.45 E-value=65 Score=32.27 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCCCCCceEEeeccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
.++.++|||.||+...+.|+ .++..|+..|.+|++.+.+.
T Consensus 379 ~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 379 QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999996432221 25667888999998887654
No 417
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=29.30 E-value=78 Score=30.11 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..+|||.+||-+... ....-|...|+.+++.|+.
T Consensus 279 ~~~Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 279 YLHTTADNIWAMGDVTGGL--QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred CcccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 3567789999999987642 4566788888888888753
No 418
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=29.00 E-value=36 Score=32.02 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCCceEEeeccccCCCC-C--chhHHHHHHHHHH
Q 018523 299 PVEGFYLAGDYTKQKYL-A--SMEGAVLSGKLCA 329 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~-~--~~~gAi~sG~~aa 329 (354)
-.+||||||+-.+-..+ + .+.-|..||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 46899999996653221 2 5677999999886
No 419
>PTZ00058 glutathione reductase; Provisional
Probab=27.33 E-value=95 Score=30.82 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCCCCCCceEEeeccccCC--------------------------------CCCchhHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQK--------------------------------YLASMEGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~--------------------------------~~~~~~gAi~sG~~aa~~il~ 334 (354)
.+++..++||.+||-+... .+....-|...|+.+|+.|..
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 3567889999999987621 124567899999999999974
No 420
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.30 E-value=69 Score=33.83 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
..+|.++|||-|||-....+ .++-+|+..|.+|++.+.+..
T Consensus 369 ~~~T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 369 HARTTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CCcccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHH
Confidence 34678999999999655433 477778889999998886643
No 421
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=27.23 E-value=76 Score=19.62 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=20.5
Q ss_pred CChHHHHHHhhhhhHHHhccccccccccCCCHHHHHHHc
Q 018523 2 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 40 (354)
Q Consensus 2 ls~~~k~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~ 40 (354)
||..+|+.++..|... . ++..++++++++.
T Consensus 17 L~~~~kl~iL~~L~~~--------~-l~s~~vr~~i~~~ 46 (50)
T PF15612_consen 17 LSPEEKLEILRALCDQ--------L-LSSSSVRNEIEER 46 (50)
T ss_dssp S-HHHHHHHHHHHHHH--------H-CC-CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--------H-cCcHHHHHHHHHh
Confidence 6788999997766622 2 6778888888864
No 422
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=26.46 E-value=2e+02 Score=29.12 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=29.8
Q ss_pred HcCCEEEecceeeEEEecCCCCE--EEEEEc---------------CC--eEEEcCEEEEccCh
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTV--KNFLLT---------------NG--NVIDGDAYVFATPV 152 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v--~~V~~~---------------~g--~~~~ad~VI~a~p~ 152 (354)
+.|++|++++.+++|..+ ++.+ ..+... +| .++.+|.||+++..
T Consensus 373 ~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 373 AEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 568999999999999864 3333 112111 12 25899999999875
No 423
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=26.17 E-value=81 Score=31.28 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHH-cCCEEEecceeeEEEecCCCCEEEEE---EcCCe--EEEcCEEEEccChhh
Q 018523 96 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 154 (354)
Q Consensus 96 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~v~~V~---~~~g~--~~~ad~VI~a~p~~~ 154 (354)
..+...|.+.+.+ .+.+|..+..|+++..++++.+.+|. ..+|+ .+++++||+++....
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4577888877776 56689999999999876555455554 34554 467889999886655
No 424
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=26.14 E-value=76 Score=30.62 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCEEEecceeeEEEe-cC-CC--CEEEEEEcCCeEEEcCEEEEccChhhHhhh
Q 018523 110 GGEVRLNSRVQKIEL-ND-DG--TVKNFLLTNGNVIDGDAYVFATPVDILKLQ 158 (354)
Q Consensus 110 g~~i~~~~~V~~I~~-~~-~g--~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 158 (354)
+.+|+-+. |..|.. ++ +| ++.+|.+.||..+.|+.||+|+..-.-..+
T Consensus 139 nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 139 NLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQI 190 (679)
T ss_pred cchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceeeEE
Confidence 34555444 444443 22 22 267899999999999999998876444443
No 425
>PRK06444 prephenate dehydrogenase; Provisional
Probab=25.72 E-value=89 Score=26.21 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCC
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 160 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~ 160 (354)
+.+-..+++.+++.|-.|. + -.+|.||+++|+..+..+++
T Consensus 10 G~mG~~~~~~~~~~g~~v~--------------------~-----~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 10 GRLGRVLCSILDDNGLGVY--------------------I-----KKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CcHHHHHHHHHHhCCCEEE--------------------E-----CCCCEEEEeCCHHHHHHHHH
Confidence 3566777888877664442 1 15899999999998877654
No 426
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.70 E-value=95 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCCCCceEEeeccccCCCCC------chhHHHHHHHHHHHH
Q 018523 296 QRSPVEGFYLAGDYTKQKYLA------SMEGAVLSGKLCAQA 331 (354)
Q Consensus 296 ~~~~~~~L~~aG~~~~~~~~~------~~~gAi~sG~~aa~~ 331 (354)
.++.++|||-||+-..+.|.+ ++-.|+..|++|++.
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 467899999999964332322 366788888888755
No 427
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=25.46 E-value=1.6e+02 Score=26.48 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHcC-CEEEecceeeEEEecCCCCEEEEEEc---C-CeEEEcCEEEEccChhhHh
Q 018523 96 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYVFATPVDILK 156 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~v~~V~~~---~-g~~~~ad~VI~a~p~~~l~ 156 (354)
..+...|.+.+++.| +++.+++ |.+|.. +.+++..|..+ + +...+.+++|+++.|+.-+
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk 210 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK 210 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEee-eEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCchh
Confidence 356677777666655 7888874 556763 45566555544 2 3456788899988876543
No 428
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=25.38 E-value=1.1e+02 Score=31.13 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred CC-CCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 018523 297 RS-PVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 297 ~~-~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~~ 336 (354)
++ +++|||-||+....+ +. .++-.|+..|++|++.+.+..
T Consensus 382 ~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 382 ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 44 599999999975422 11 246778889999998887653
No 429
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=25.21 E-value=88 Score=34.17 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=30.1
Q ss_pred CCCCCceEEeeccccCCC----C--CchhHHHHHHHHHHHHHHHHhh
Q 018523 297 RSPVEGFYLAGDYTKQKY----L--ASMEGAVLSGKLCAQAIVQDYV 337 (354)
Q Consensus 297 ~~~~~~L~~aG~~~~~~~----~--~~~~gAi~sG~~aa~~il~~~~ 337 (354)
..|++|||.||+.+.+-+ + .++-.|+..|+.|++.+.+.+.
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~ 903 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQ 903 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999754222 1 2456689999999999877653
No 430
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=24.68 E-value=2.6e+02 Score=20.37 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=23.1
Q ss_pred HHHHHHHcCCEEEecceeeEEEec-CCCCEEEEEEcCCeEEEc
Q 018523 102 IVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDG 143 (354)
Q Consensus 102 l~~~l~~~g~~i~~~~~V~~I~~~-~~g~v~~V~~~~g~~~~a 143 (354)
|.+.++++|+... |..+... ++.-|+.|+++||..+.+
T Consensus 2 mVklie~~G~~F~----V~dm~~~dg~~~V~~ie~~dGti~~~ 40 (102)
T PF03197_consen 2 MVKLIEENGGWFE----VKDMSSIDGDYFVEKIEMADGTIYNS 40 (102)
T ss_pred HhHHHHHcCCcEE----EeeeEecccceeEEEEEecCCcEEcC
Confidence 4566778888763 4455442 223466788888865543
No 431
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=23.95 E-value=70 Score=29.90 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=28.5
Q ss_pred CCceEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 018523 300 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 333 (354)
Q Consensus 300 ~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il 333 (354)
.+|++|+|......| -.|+.|+.+|+.++++++
T Consensus 344 ~~~v~~~GRlg~y~Y-~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 344 EDNLILLGRLAEYQY-YDMDQAILAALYKAEQLL 376 (377)
T ss_pred CCCEEEeeeeeEeEe-ecHHHHHHHHHHHHHHhh
Confidence 469999998877666 589999999999999875
No 432
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=23.94 E-value=79 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.0
Q ss_pred CCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
|.++|+|+|||.+|. .|.+--...++.-|++++..+
T Consensus 81 ~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~ay 116 (426)
T PRK15458 81 PQEALILGGDHLGPN--RWQNLPAAQAMANADDLIKSY 116 (426)
T ss_pred ChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHH
Confidence 335799999999986 466555556666666666554
No 433
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=23.82 E-value=1.4e+02 Score=27.28 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHcCCEEEecceeeEEEecCCCC---EEEEEEcCCeEEEcCEEEEccCh
Q 018523 96 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGT---VKNFLLTNGNVIDGDAYVFATPV 152 (354)
Q Consensus 96 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~---v~~V~~~~g~~~~ad~VI~a~p~ 152 (354)
..+...+.+.++..|++|.+|-+|++|..+.++. -+.|.-..|++++...||..+.+
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccc
Confidence 3577888888889999999999999999864431 11133223578888988887665
No 434
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=23.51 E-value=78 Score=30.57 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCCCCCceEEeeccccCCCC-C------chhHHHHHHHHHHHHHHHHh
Q 018523 295 LQRSPVEGFYLAGDYTKQKYL-A------SMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~-~------~~~gAi~sG~~aa~~il~~~ 336 (354)
..++.++|||-+|+-...|.. + ++-.++..|.++|+.|...+
T Consensus 349 ~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 349 NGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred CCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 457889999999997776431 1 23346778888888888765
No 435
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.50 E-value=83 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
|.++|+|+|||.+|. .|.......++.-|++++..+
T Consensus 78 ~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~ay 113 (421)
T PRK15052 78 PRERIILGGDHLGPN--CWQQEPADAAMEKSVELVKAY 113 (421)
T ss_pred ChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHH
Confidence 334799999999985 455555555666666665544
No 436
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=23.27 E-value=82 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=24.7
Q ss_pred CceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 301 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 301 ~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
++|+|+|||.+|. .|-.-....++.-|++++..+
T Consensus 83 ~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~ay 116 (424)
T PF08013_consen 83 DRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRAY 116 (424)
T ss_dssp GGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHHH
T ss_pred hhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHHH
Confidence 5699999999985 455555556777777776654
No 437
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=22.70 E-value=1e+02 Score=26.90 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=17.9
Q ss_pred EEEecceeeEEEecCCCCEEEEEEcCCeE
Q 018523 112 EVRLNSRVQKIELNDDGTVKNFLLTNGNV 140 (354)
Q Consensus 112 ~i~~~~~V~~I~~~~~g~v~~V~~~~g~~ 140 (354)
.+.++++|++.+...+|++ |++.+|.+
T Consensus 180 sL~~~s~VtSlEvs~dG~i--lTia~gss 206 (334)
T KOG0278|consen 180 SLEFNSPVTSLEVSQDGRI--LTIAYGSS 206 (334)
T ss_pred EEecCCCCcceeeccCCCE--EEEecCce
Confidence 5667777777777777765 55555544
No 438
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=22.66 E-value=6.3e+02 Score=23.53 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHHhCCCCccccccccceeEEEEEEeCCCccccCCCCCCCCCCCCCC-CCceEEeeccccCCCCCch
Q 018523 240 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSP-VEGFYLAGDYTKQKYLASM 318 (354)
Q Consensus 240 ~~~ee~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~L~~aG~~~~~~~~~~~ 318 (354)
.+.+...+.+.-.|....|.+. .+++... | .+.|.... ....--.-..| +.|||+|-..... ++
T Consensus 401 VD~d~F~qkiwP~L~nRVP~fe-----takVqsa----W-aGyyD~Nt-fD~ngViG~HP~y~Nly~atGFsgh----Gv 465 (509)
T KOG2853|consen 401 VDHDYFYQKIWPHLANRVPAFE-----TAKVQSA----W-AGYYDHNT-FDDNGVIGEHPLYTNLYMATGFSGH----GV 465 (509)
T ss_pred cChHHHHhhhhHHHHhcccccc-----eeeeeeh----h-cccccccc-cccCCcccCCcceeeeeeeeccccc----ch
Confidence 4556677778888888888764 2233221 2 12222111 00000011223 4699998754332 56
Q ss_pred hHHHHHHHHHHHHHHH
Q 018523 319 EGAVLSGKLCAQAIVQ 334 (354)
Q Consensus 319 ~gAi~sG~~aa~~il~ 334 (354)
..+.--|+..|+.|++
T Consensus 466 qqs~avgRAiaElIld 481 (509)
T KOG2853|consen 466 QQSPAVGRAIAELILD 481 (509)
T ss_pred hcchHHHHHHHHHHhc
Confidence 6666668888888876
No 439
>PRK07804 L-aspartate oxidase; Provisional
Probab=22.33 E-value=1.1e+02 Score=30.06 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCCCCCceEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~-~~------~~~~gAi~sG~~aa~~il~~ 335 (354)
..+++++|||-||+-...+ +. .++..++..|++|++.+.+.
T Consensus 365 ~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 365 YGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CCcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999976422 11 23455778899999888654
No 440
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.93 E-value=95 Score=29.20 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=23.1
Q ss_pred CCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 018523 299 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 336 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~~ 336 (354)
|.++|+++|||.+|. .|.+-....++.-|++++..+
T Consensus 77 ~~~~iiLggDHlGPn--~Wq~lpa~eAM~~A~~li~ay 112 (420)
T TIGR02810 77 PRDRLILGGDHLGPN--PWQHLPADEAMAKAAALVDAY 112 (420)
T ss_pred ChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHHH
Confidence 334799999999986 355444445555565555543
No 441
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=21.54 E-value=1.2e+02 Score=30.55 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=23.8
Q ss_pred CCCCCCCceEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 018523 295 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 335 (354)
Q Consensus 295 ~~~~~~~~L~~aG~~~~~~~~~~~~gAi~sG~~aa~~il~~ 335 (354)
..+|.++|||-||+-...+.....-.++..|..++..+.+.
T Consensus 401 ~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~ 441 (614)
T TIGR02061 401 NRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRW 441 (614)
T ss_pred CCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHH
Confidence 34678999999999654331112233455566555555443
No 442
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=21.32 E-value=1.5e+02 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=23.6
Q ss_pred cccc-cCCCHHHHHHHcCCChHHHHHHHHHH
Q 018523 25 VEAQ-DGLTVQEWMRKQGVPDRVTTEVFIAM 54 (354)
Q Consensus 25 ~~~~-d~~s~~~~l~~~g~~~~~~~~~~~~~ 54 (354)
+.+. +..|+.-+++++|+.++.+..+-..+
T Consensus 55 ~tH~g~~cTFe~ll~~f~L~dpaL~~la~IV 85 (135)
T PF09828_consen 55 FTHRGDRCTFEVLLASFGLDDPALARLAAIV 85 (135)
T ss_pred eeeeCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 4543 67899999999999999888765444
No 443
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=21.22 E-value=44 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.5
Q ss_pred ceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhC
Q 018523 117 SRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 159 (354)
Q Consensus 117 ~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll 159 (354)
.+|++++.+ ++ .|.+.+|+++.+|..|.|+....--..+
T Consensus 112 ekv~~f~P~-~N---~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851|consen 112 EKVKEFNPD-KN---TVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred HHHHhcCCC-cC---eEEccCCcEEeeeeEeeeeeceeccchh
Confidence 678888874 33 3778889999999999999886544433
No 444
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=20.83 E-value=1e+02 Score=26.32 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCceEEeeccccCC-----CCCchhHHHHHHHHHHHHHHHHhhhHHH
Q 018523 299 PVEGFYLAGDYTKQK-----YLASMEGAVLSGKLCAQAIVQDYVLLAA 341 (354)
Q Consensus 299 ~~~~L~~aG~~~~~~-----~~~~~~gAi~sG~~aa~~il~~~~~~~~ 341 (354)
-++|.+++|-.++.- .+....+-+.||..||+++++.++.+.|
T Consensus 275 vvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG~kAaq~aLk~f~~~~a 322 (328)
T KOG2960|consen 275 VVPGMIVAGMEVAELDGANRMGPTFGAMMLSGVKAAQQALKHFAAPNA 322 (328)
T ss_pred ccCceEEeeeeeeeccCCcccCcchhhhhhcchhHHHHHHHHhcCccc
Confidence 356777777554311 1135667788999999999999987655
No 445
>PF13619 KTSC: KTSC domain
Probab=20.57 E-value=1.7e+02 Score=18.92 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=30.3
Q ss_pred cceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhHhhhCCc
Q 018523 116 NSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 161 (354)
Q Consensus 116 ~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~ll~~ 161 (354)
++.|..|..+.+.+...|...+|..++ -+.+|......|+..
T Consensus 3 Ss~I~~v~Yd~~~~~L~V~F~~G~~Y~----Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 3 SSNIRSVGYDPETRTLEVEFKSGSVYR----YFGVPPEVYEALLNA 44 (60)
T ss_pred cCcccEEeECCCCCEEEEEEcCCCEEE----ECCCCHHHHHHHHcC
Confidence 456778888766666568888886544 357799999988754
No 446
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=20.53 E-value=1.7e+02 Score=27.04 Aligned_cols=43 Identities=33% Similarity=0.396 Sum_probs=33.4
Q ss_pred HcCCEEEecceeeEEEecCCCCEEEEEEcCCeEEEcCEEEEccChhhH
Q 018523 108 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 155 (354)
Q Consensus 108 ~~g~~i~~~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 155 (354)
+.+..++++++|++|... +. . |.+.+| ++.+|+.|+++.....
T Consensus 65 ~~~i~~~~~~~v~~id~~-~~-~--v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPE-NK-V--VLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred hhCCEEeeCCEEEEecCC-CC-E--EEECCC-cccccEEEEcCCCccc
Confidence 568999999999999973 43 2 677777 8889999998766433
Done!