Query 018525
Match_columns 354
No_of_seqs 209 out of 1136
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2683 Sirtuin 4 and related 100.0 3.8E-70 8.3E-75 499.8 19.0 259 81-354 6-267 (305)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 6.6E-62 1.4E-66 462.3 21.7 223 115-353 1-224 (260)
3 PRK05333 NAD-dependent deacety 100.0 2.8E-59 6.1E-64 449.6 21.9 228 109-353 6-234 (285)
4 PTZ00409 Sir2 (Silent Informat 100.0 1.7E-56 3.6E-61 427.3 16.9 200 109-353 15-219 (271)
5 COG0846 SIR2 NAD-dependent pro 100.0 4.4E-56 9.5E-61 418.7 19.2 196 112-353 2-202 (250)
6 PRK14138 NAD-dependent deacety 100.0 1.2E-55 2.6E-60 415.9 19.1 194 113-353 2-198 (244)
7 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 2.3E-55 5E-60 408.6 15.4 187 119-353 1-191 (222)
8 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 6E-54 1.3E-58 402.3 17.2 183 123-353 1-195 (235)
9 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 6E-54 1.3E-58 395.1 15.6 172 123-353 1-175 (206)
10 PRK00481 NAD-dependent deacety 100.0 1.2E-53 2.6E-58 401.5 18.0 192 111-353 2-197 (242)
11 cd01411 SIR2H SIR2H: Uncharact 100.0 1.8E-53 3.8E-58 396.7 18.6 185 115-353 1-191 (225)
12 cd01407 SIR2-fam SIR2 family o 100.0 5.8E-53 1.3E-57 391.0 16.5 183 123-354 1-188 (218)
13 PTZ00410 NAD-dependent SIR2; P 100.0 2.7E-52 5.9E-57 408.2 20.0 197 109-353 14-225 (349)
14 PTZ00408 NAD-dependent deacety 100.0 8.7E-52 1.9E-56 389.2 17.4 182 120-353 2-192 (242)
15 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2.8E-51 6.1E-56 380.9 15.1 180 123-353 1-184 (224)
16 PF02146 SIR2: Sir2 family; I 100.0 2.8E-51 6E-56 368.3 12.8 173 130-348 1-178 (178)
17 cd00296 SIR2 SIR2 superfamily 100.0 1.3E-46 2.9E-51 347.2 15.9 181 123-353 1-189 (222)
18 KOG2684 Sirtuin 5 and related 100.0 5.8E-46 1.3E-50 363.7 13.9 201 109-354 75-301 (412)
19 KOG2682 NAD-dependent histone 100.0 1.5E-41 3.2E-46 312.0 11.1 196 110-353 22-232 (314)
20 KOG1905 Class IV sirtuins (SIR 100.0 9.7E-39 2.1E-43 301.1 7.1 192 109-353 42-236 (353)
21 cd01406 SIR2-like Sir2-like: P 98.8 1.7E-08 3.7E-13 94.6 8.2 110 123-233 1-150 (242)
22 PF07295 DUF1451: Protein of u 90.7 0.16 3.5E-06 44.8 2.1 13 229-241 110-122 (146)
23 PRK11032 hypothetical protein; 90.6 0.17 3.8E-06 45.2 2.3 13 229-241 122-134 (160)
24 smart00834 CxxC_CXXC_SSSS Puta 85.3 0.66 1.4E-05 31.2 2.0 13 230-242 4-16 (41)
25 PF09723 Zn-ribbon_8: Zinc rib 81.1 1.6 3.6E-05 30.1 2.7 14 229-242 3-16 (42)
26 PRK06260 threonine synthase; V 79.7 1.3 2.9E-05 44.7 2.6 13 230-242 2-14 (397)
27 TIGR02098 MJ0042_CXXC MJ0042 f 78.7 1.5 3.2E-05 29.3 1.8 12 231-242 2-13 (38)
28 PF09845 DUF2072: Zn-ribbon co 78.0 1.1 2.4E-05 38.8 1.2 11 232-242 2-12 (131)
29 TIGR00354 polC DNA polymerase, 75.3 3.4 7.4E-05 46.2 4.3 20 224-243 1000-1024(1095)
30 PRK00398 rpoP DNA-directed RNA 75.0 2.4 5.2E-05 29.7 2.1 11 231-241 3-13 (46)
31 PF13717 zinc_ribbon_4: zinc-r 74.8 2.1 4.7E-05 28.6 1.7 13 231-243 2-14 (36)
32 PRK07591 threonine synthase; V 73.9 2.4 5.3E-05 43.3 2.7 15 228-242 15-29 (421)
33 COG3364 Zn-ribbon containing p 72.9 1.5 3.2E-05 36.5 0.6 11 232-242 3-13 (112)
34 PRK06266 transcription initiat 72.6 2.7 5.9E-05 38.2 2.4 12 299-310 137-148 (178)
35 PF00205 TPP_enzyme_M: Thiamin 72.5 3.4 7.3E-05 34.9 2.8 23 112-134 1-23 (137)
36 TIGR00373 conserved hypothetic 72.0 3.8 8.1E-05 36.4 3.1 15 230-244 108-122 (158)
37 PRK04023 DNA polymerase II lar 71.3 4.8 0.0001 45.4 4.3 20 224-243 1025-1049(1121)
38 PRK14714 DNA polymerase II lar 71.1 4.8 0.0001 46.4 4.3 20 224-243 1241-1265(1337)
39 TIGR02605 CxxC_CxxC_SSSS putat 70.8 3.5 7.6E-05 29.3 2.1 13 230-242 4-16 (52)
40 COG0028 IlvB Thiamine pyrophos 70.2 9.2 0.0002 40.7 6.0 28 110-137 188-215 (550)
41 PRK14873 primosome assembly pr 69.8 24 0.00051 38.5 9.2 13 298-310 422-435 (665)
42 PF14353 CpXC: CpXC protein 69.6 1.5 3.2E-05 37.2 -0.0 13 232-244 2-14 (128)
43 COG1379 PHP family phosphoeste 69.6 1.1 2.3E-05 44.5 -1.0 20 224-243 239-258 (403)
44 TIGR03844 cysteate_syn cysteat 69.0 3.5 7.5E-05 42.0 2.5 13 230-242 1-13 (398)
45 smart00531 TFIIE Transcription 67.6 3.6 7.9E-05 35.9 2.0 13 231-243 99-111 (147)
46 PF13719 zinc_ribbon_5: zinc-r 67.5 4.1 8.8E-05 27.4 1.8 12 231-242 2-13 (37)
47 PRK06450 threonine synthase; V 66.9 4 8.8E-05 40.5 2.4 11 231-241 3-13 (338)
48 PRK05580 primosome assembly pr 66.6 10 0.00022 41.4 5.6 23 323-345 468-490 (679)
49 PRK00564 hypA hydrogenase nick 65.6 4.2 9E-05 34.4 1.9 18 224-241 64-81 (117)
50 PRK12496 hypothetical protein; 65.5 3.9 8.5E-05 36.6 1.8 12 231-242 127-138 (164)
51 TIGR00595 priA primosomal prot 65.2 14 0.00029 38.9 6.0 23 323-345 300-322 (505)
52 cd00350 rubredoxin_like Rubred 64.3 5.5 0.00012 26.0 1.9 11 232-242 2-12 (33)
53 cd00729 rubredoxin_SM Rubredox 62.5 7.9 0.00017 25.6 2.4 11 231-241 2-12 (34)
54 PF00301 Rubredoxin: Rubredoxi 62.5 7.4 0.00016 27.8 2.4 13 231-243 1-13 (47)
55 PF02591 DUF164: Putative zinc 61.9 9.5 0.00021 27.7 3.0 21 221-245 16-36 (56)
56 PRK14715 DNA polymerase II lar 61.4 9.8 0.00021 44.2 4.3 14 299-312 1558-1571(1627)
57 COG1198 PriA Primosomal protei 59.6 17 0.00037 40.0 5.7 18 223-240 427-444 (730)
58 COG1773 Rubredoxin [Energy pro 58.7 13 0.00028 27.6 3.2 13 230-242 2-14 (55)
59 PF05191 ADK_lid: Adenylate ki 57.6 11 0.00023 25.4 2.4 11 232-242 2-12 (36)
60 cd00730 rubredoxin Rubredoxin; 57.5 7.3 0.00016 28.2 1.7 12 232-243 2-13 (50)
61 COG2331 Uncharacterized protei 57.1 5.5 0.00012 31.4 1.1 20 298-317 33-57 (82)
62 COG1579 Zn-ribbon protein, pos 56.9 6.2 0.00014 37.6 1.6 20 222-245 192-211 (239)
63 PF00205 TPP_enzyme_M: Thiamin 54.3 8.3 0.00018 32.5 1.9 22 325-346 69-90 (137)
64 PRK08197 threonine synthase; V 53.8 8.1 0.00018 39.0 2.0 13 230-242 6-18 (394)
65 COG1996 RPC10 DNA-directed RNA 52.7 9.2 0.0002 27.6 1.6 11 231-241 6-16 (49)
66 PF09151 DUF1936: Domain of un 52.6 7.4 0.00016 25.5 0.9 12 300-311 3-15 (36)
67 PF13240 zinc_ribbon_2: zinc-r 52.3 6.3 0.00014 23.8 0.6 8 300-307 15-22 (23)
68 PRK03681 hypA hydrogenase nick 51.8 10 0.00022 31.8 2.0 12 230-241 69-80 (114)
69 PRK03824 hypA hydrogenase nick 51.1 9.7 0.00021 33.0 1.8 14 230-243 69-82 (135)
70 PRK12380 hydrogenase nickel in 50.3 9.8 0.00021 31.9 1.6 19 223-241 62-80 (113)
71 COG1439 Predicted nucleic acid 49.9 13 0.00027 34.0 2.3 13 300-312 155-167 (177)
72 PF09538 FYDLN_acid: Protein o 49.2 11 0.00024 31.6 1.7 13 299-311 27-39 (108)
73 PF01475 FUR: Ferric uptake re 48.9 18 0.00038 30.0 3.0 52 185-244 40-93 (120)
74 PF01155 HypA: Hydrogenase exp 48.6 8 0.00017 32.4 0.8 21 223-243 62-82 (113)
75 TIGR00100 hypA hydrogenase nic 48.5 11 0.00024 31.7 1.6 13 230-242 69-81 (115)
76 smart00659 RPOLCX RNA polymera 47.6 16 0.00036 25.6 2.2 10 298-307 19-28 (44)
77 TIGR02300 FYDLN_acid conserved 43.8 16 0.00035 31.6 1.9 14 298-311 26-39 (129)
78 PRK05638 threonine synthase; V 43.7 15 0.00032 37.8 2.0 12 231-242 1-12 (442)
79 COG1066 Sms Predicted ATP-depe 42.5 16 0.00034 37.8 2.0 12 230-241 6-17 (456)
80 PF12172 DUF35_N: Rubredoxin-l 42.4 14 0.0003 24.5 1.1 14 227-240 7-20 (37)
81 TIGR02720 pyruv_oxi_spxB pyruv 42.1 30 0.00066 36.6 4.2 29 106-134 184-212 (575)
82 PLN02569 threonine synthase 41.9 15 0.00033 38.4 1.9 12 231-242 49-60 (484)
83 PRK08273 thiamine pyrophosphat 41.3 34 0.00074 36.4 4.4 28 107-134 193-220 (597)
84 CHL00099 ilvB acetohydroxyacid 40.9 34 0.00074 36.3 4.4 29 106-134 201-229 (585)
85 COG0549 ArcC Carbamate kinase 40.8 38 0.00081 33.4 4.2 46 98-150 160-205 (312)
86 PRK12775 putative trifunctiona 40.1 18 0.00038 41.4 2.1 16 295-310 835-850 (1006)
87 COG1110 Reverse gyrase [DNA re 39.9 27 0.00058 39.9 3.4 36 299-343 709-744 (1187)
88 PRK07524 hypothetical protein; 39.2 36 0.00077 35.6 4.1 28 107-134 186-213 (535)
89 TIGR03254 oxalate_oxc oxalyl-C 39.1 31 0.00068 36.3 3.7 25 108-132 77-101 (554)
90 PRK07586 hypothetical protein; 38.8 36 0.00078 35.4 4.1 30 106-135 181-210 (514)
91 PRK09259 putative oxalyl-CoA d 38.7 36 0.00078 36.0 4.1 29 106-134 197-225 (569)
92 PRK06154 hypothetical protein; 38.4 39 0.00084 35.8 4.3 31 106-136 198-228 (565)
93 PRK05858 hypothetical protein; 38.4 32 0.00069 36.1 3.6 32 315-346 244-275 (542)
94 PRK11823 DNA repair protein Ra 38.1 18 0.00039 37.4 1.7 11 231-241 7-17 (446)
95 PRK09462 fur ferric uptake reg 37.7 55 0.0012 28.2 4.4 52 184-243 49-102 (148)
96 PF13289 SIR2_2: SIR2-like dom 37.3 16 0.00035 30.4 1.0 14 205-218 2-15 (143)
97 TIGR02418 acolac_catab acetola 36.8 44 0.00095 35.0 4.3 29 107-135 180-208 (539)
98 TIGR01504 glyox_carbo_lig glyo 36.6 45 0.00097 35.6 4.4 29 107-135 187-215 (588)
99 cd07153 Fur_like Ferric uptake 36.3 43 0.00093 27.2 3.4 52 184-243 32-85 (116)
100 PRK09107 acetolactate synthase 36.3 44 0.00096 35.7 4.3 29 106-134 196-224 (595)
101 PRK08329 threonine synthase; V 36.0 20 0.00043 35.6 1.5 11 232-242 2-12 (347)
102 cd01121 Sms Sms (bacterial rad 35.9 16 0.00035 36.9 0.9 9 233-241 2-10 (372)
103 COG1675 TFA1 Transcription ini 35.9 17 0.00037 33.1 1.0 11 299-309 133-143 (176)
104 COG3962 Acetolactate synthase 35.6 39 0.00085 35.6 3.6 115 25-143 120-262 (617)
105 COG2051 RPS27A Ribosomal prote 35.3 19 0.00041 27.7 0.9 17 224-240 12-28 (67)
106 PRK07418 acetolactate synthase 35.2 40 0.00088 36.0 3.8 29 106-134 208-236 (616)
107 PF06676 DUF1178: Protein of u 35.2 44 0.00095 29.6 3.4 20 298-317 32-57 (148)
108 PRK07092 benzoylformate decarb 35.1 49 0.0011 34.6 4.4 29 106-134 190-218 (530)
109 PRK07789 acetolactate synthase 34.8 44 0.00096 35.7 4.1 29 107-135 216-244 (612)
110 PRK07064 hypothetical protein; 34.7 45 0.00098 34.8 4.1 29 106-134 187-215 (544)
111 PRK11788 tetratricopeptide rep 34.5 24 0.00051 34.4 1.8 19 298-316 368-388 (389)
112 TIGR00416 sms DNA repair prote 34.3 21 0.00045 37.0 1.4 11 231-241 7-17 (454)
113 PRK08617 acetolactate synthase 34.3 48 0.001 34.8 4.2 28 107-134 186-213 (552)
114 TIGR00375 conserved hypothetic 34.1 18 0.0004 36.7 1.0 16 226-241 235-250 (374)
115 PF04475 DUF555: Protein of un 33.5 27 0.00058 29.0 1.6 21 298-318 47-67 (102)
116 PRK07586 hypothetical protein; 33.5 39 0.00084 35.1 3.3 24 109-132 77-100 (514)
117 PRK08327 acetolactate synthase 33.5 47 0.001 35.2 4.0 29 107-135 205-233 (569)
118 PRK05452 anaerobic nitric oxid 33.5 31 0.00067 36.0 2.5 20 223-242 417-436 (479)
119 PRK06112 acetolactate synthase 33.3 51 0.0011 34.9 4.2 28 107-134 198-225 (578)
120 TIGR00173 menD 2-succinyl-5-en 33.3 47 0.001 33.8 3.8 39 107-145 196-245 (432)
121 PRK00945 acetyl-CoA decarbonyl 33.2 45 0.00098 30.2 3.2 23 113-135 25-47 (171)
122 PRK07979 acetolactate synthase 33.2 47 0.001 35.1 3.9 30 107-136 191-220 (574)
123 PRK06965 acetolactate synthase 33.1 45 0.00097 35.5 3.8 28 108-135 207-234 (587)
124 PF02150 RNA_POL_M_15KD: RNA p 33.1 20 0.00043 23.8 0.7 13 300-312 3-15 (35)
125 TIGR03457 sulphoacet_xsc sulfo 33.0 54 0.0012 34.7 4.3 29 107-135 181-209 (579)
126 PF01396 zf-C4_Topoisom: Topoi 32.8 24 0.00051 24.0 1.1 13 300-312 3-15 (39)
127 PF10083 DUF2321: Uncharacteri 32.8 14 0.0003 33.0 -0.2 22 192-216 4-25 (158)
128 PF03604 DNA_RNApol_7kD: DNA d 32.7 41 0.00088 22.1 2.1 9 299-307 18-26 (32)
129 PRK12474 hypothetical protein; 32.6 55 0.0012 34.2 4.2 28 107-134 186-213 (518)
130 PF14803 Nudix_N_2: Nudix N-te 32.4 21 0.00044 23.8 0.7 14 300-313 2-15 (34)
131 PRK09444 pntB pyridine nucleot 32.3 39 0.00084 35.2 3.0 42 310-351 355-399 (462)
132 PRK08273 thiamine pyrophosphat 32.2 36 0.00078 36.3 2.8 25 108-132 79-103 (597)
133 PRK07979 acetolactate synthase 31.9 37 0.00081 35.9 2.9 26 109-134 80-105 (574)
134 COG3142 CutC Uncharacterized p 31.9 46 0.001 31.7 3.2 28 109-136 155-183 (241)
135 cd05013 SIS_RpiR RpiR-like pro 31.8 38 0.00083 27.5 2.4 27 111-138 2-28 (139)
136 PRK06725 acetolactate synthase 31.7 55 0.0012 34.7 4.1 29 107-135 199-227 (570)
137 PRK08322 acetolactate synthase 31.6 59 0.0013 34.0 4.3 28 107-134 181-208 (547)
138 TIGR00853 pts-lac PTS system, 31.5 21 0.00045 28.9 0.7 16 121-136 2-17 (95)
139 TIGR03393 indolpyr_decarb indo 31.3 36 0.00079 35.7 2.7 24 108-131 75-98 (539)
140 PLN02470 acetolactate synthase 31.3 56 0.0012 34.7 4.1 28 107-134 200-227 (585)
141 PRK07282 acetolactate synthase 31.3 53 0.0012 34.7 3.9 29 107-135 195-223 (566)
142 TIGR03394 indol_phenyl_DC indo 31.3 38 0.00082 35.6 2.8 23 109-131 76-98 (535)
143 TIGR03254 oxalate_oxc oxalyl-C 31.3 57 0.0012 34.3 4.1 28 107-134 191-218 (554)
144 PF04216 FdhE: Protein involve 31.2 27 0.00058 33.8 1.6 22 222-243 184-209 (290)
145 PRK06456 acetolactate synthase 31.2 65 0.0014 34.0 4.6 28 107-134 192-219 (572)
146 PRK11269 glyoxylate carboligas 31.2 60 0.0013 34.5 4.3 28 107-134 188-215 (591)
147 PRK06154 hypothetical protein; 31.2 39 0.00084 35.9 2.9 24 109-132 94-117 (565)
148 PRK07524 hypothetical protein; 31.1 38 0.00083 35.4 2.8 24 108-131 76-99 (535)
149 PRK09259 putative oxalyl-CoA d 31.1 50 0.0011 34.9 3.7 25 108-132 84-108 (569)
150 PRK08199 thiamine pyrophosphat 31.1 59 0.0013 34.2 4.2 28 107-134 189-216 (557)
151 PRK03922 hypothetical protein; 31.1 30 0.00066 29.1 1.6 20 298-317 49-68 (113)
152 PRK08978 acetolactate synthase 31.0 57 0.0012 34.2 4.1 28 107-134 181-208 (548)
153 PRK05858 hypothetical protein; 30.9 64 0.0014 33.9 4.4 29 106-134 187-215 (542)
154 PRK07525 sulfoacetaldehyde ace 30.9 39 0.00084 35.9 2.8 20 326-345 259-278 (588)
155 PLN02470 acetolactate synthase 30.8 39 0.00084 35.9 2.8 25 108-132 88-112 (585)
156 PRK07418 acetolactate synthase 30.5 39 0.00085 36.1 2.8 20 326-345 283-302 (616)
157 PRK06725 acetolactate synthase 30.3 40 0.00087 35.8 2.8 26 108-133 89-114 (570)
158 PRK00762 hypA hydrogenase nick 30.3 34 0.00074 29.1 1.9 11 231-242 70-80 (124)
159 PF14419 SPOUT_MTase_2: AF2226 30.1 53 0.0011 29.6 3.0 40 98-141 95-135 (173)
160 PF10571 UPF0547: Uncharacteri 29.9 33 0.00072 21.4 1.3 9 299-307 15-23 (26)
161 PRK08979 acetolactate synthase 29.7 42 0.00091 35.5 2.8 23 325-347 264-286 (572)
162 PRK08979 acetolactate synthase 29.7 55 0.0012 34.7 3.7 27 108-134 192-218 (572)
163 PRK07282 acetolactate synthase 29.7 42 0.00091 35.5 2.8 20 326-345 269-288 (566)
164 PRK08155 acetolactate synthase 29.7 62 0.0013 34.1 4.1 29 107-135 196-224 (564)
165 PRK06457 pyruvate dehydrogenas 29.6 42 0.00092 35.3 2.8 27 105-131 73-99 (549)
166 PRK08322 acetolactate synthase 29.6 46 0.00099 34.8 3.1 28 104-131 71-98 (547)
167 PRK08611 pyruvate oxidase; Pro 29.6 66 0.0014 34.1 4.3 28 107-134 188-215 (576)
168 COG1545 Predicted nucleic-acid 29.5 37 0.0008 29.5 2.0 15 227-241 25-39 (140)
169 PRK07789 acetolactate synthase 29.2 44 0.00095 35.7 2.9 22 326-347 290-311 (612)
170 PRK08527 acetolactate synthase 28.7 58 0.0013 34.4 3.7 30 107-136 188-217 (563)
171 PRK09107 acetolactate synthase 28.6 45 0.00097 35.6 2.8 25 108-132 86-110 (595)
172 COG1885 Uncharacterized protei 28.5 34 0.00075 28.6 1.5 20 298-317 49-68 (115)
173 PRK06882 acetolactate synthase 28.4 47 0.001 35.1 2.9 28 106-133 77-104 (574)
174 PRK06965 acetolactate synthase 28.3 45 0.00098 35.4 2.8 22 326-347 280-301 (587)
175 COG1933 Archaeal DNA polymeras 28.2 24 0.00051 33.7 0.6 10 298-307 183-192 (253)
176 COG1282 PntB NAD/NADP transhyd 28.1 39 0.00084 34.5 2.1 43 309-351 356-401 (463)
177 CHL00099 ilvB acetohydroxyacid 28.0 47 0.001 35.3 2.8 25 108-132 88-112 (585)
178 PF07282 OrfB_Zn_ribbon: Putat 28.0 55 0.0012 24.3 2.5 23 218-240 15-37 (69)
179 PRK08978 acetolactate synthase 27.9 47 0.001 34.9 2.8 28 106-133 73-100 (548)
180 PRK07525 sulfoacetaldehyde ace 27.8 59 0.0013 34.5 3.6 28 107-134 185-212 (588)
181 TIGR00118 acolac_lg acetolacta 27.8 61 0.0013 34.1 3.6 28 107-134 186-213 (558)
182 TIGR00315 cdhB CO dehydrogenas 27.7 56 0.0012 29.3 2.8 22 113-134 18-39 (162)
183 PF04606 Ogr_Delta: Ogr/Delta- 27.7 32 0.0007 24.1 1.1 11 300-310 1-11 (47)
184 COG0028 IlvB Thiamine pyrophos 27.6 44 0.00095 35.6 2.5 23 109-131 77-99 (550)
185 PRK06048 acetolactate synthase 27.6 70 0.0015 33.7 4.1 29 107-135 192-220 (561)
186 PRK09590 celB cellobiose phosp 27.5 27 0.00058 28.9 0.7 14 123-136 2-15 (104)
187 COG3091 SprT Zn-dependent meta 27.4 18 0.00039 32.2 -0.3 52 190-242 70-127 (156)
188 PRK07710 acetolactate synthase 27.2 75 0.0016 33.6 4.2 28 107-134 200-227 (571)
189 PRK08611 pyruvate oxidase; Pro 27.2 49 0.0011 35.1 2.8 27 108-134 80-106 (576)
190 PRK06276 acetolactate synthase 27.1 80 0.0017 33.5 4.4 28 107-134 188-215 (586)
191 PRK13264 3-hydroxyanthranilate 27.1 26 0.00057 31.9 0.6 38 205-242 86-131 (177)
192 KOG1185 Thiamine pyrophosphate 27.1 1.7E+02 0.0036 31.1 6.4 39 107-145 202-252 (571)
193 TIGR01504 glyox_carbo_lig glyo 27.0 49 0.0011 35.2 2.8 26 109-134 80-105 (588)
194 PRK08527 acetolactate synthase 27.0 50 0.0011 34.9 2.8 25 108-132 78-102 (563)
195 TIGR00746 arcC carbamate kinas 26.9 60 0.0013 32.1 3.2 43 98-146 158-200 (310)
196 COG4019 Uncharacterized protei 26.8 68 0.0015 27.9 3.1 23 109-131 23-45 (156)
197 PRK06546 pyruvate dehydrogenas 26.8 75 0.0016 33.7 4.1 28 107-134 186-213 (578)
198 PRK14873 primosome assembly pr 26.8 34 0.00074 37.4 1.5 17 224-240 376-392 (665)
199 PF10263 SprT-like: SprT-like 26.7 44 0.00096 28.7 2.0 15 228-242 120-134 (157)
200 PRK06048 acetolactate synthase 26.5 52 0.0011 34.7 2.8 24 108-131 82-105 (561)
201 PRK06457 pyruvate dehydrogenas 26.4 80 0.0017 33.2 4.2 25 110-134 183-207 (549)
202 PF14169 YdjO: Cold-inducible 26.3 44 0.00095 25.1 1.6 18 297-314 38-55 (59)
203 TIGR00595 priA primosomal prot 26.1 38 0.00081 35.6 1.7 16 225-240 207-222 (505)
204 PLN02573 pyruvate decarboxylas 26.1 52 0.0011 35.0 2.8 23 109-131 91-113 (578)
205 PRK06456 acetolactate synthase 25.9 55 0.0012 34.5 2.9 26 108-133 80-105 (572)
206 PRK09124 pyruvate dehydrogenas 25.3 78 0.0017 33.4 3.9 28 107-134 186-213 (574)
207 COG3925 N-terminal domain of t 25.1 43 0.00094 27.6 1.5 15 332-346 39-53 (103)
208 TIGR02720 pyruv_oxi_spxB pyruv 25.1 57 0.0012 34.6 2.8 28 109-136 76-103 (575)
209 PF09297 zf-NADH-PPase: NADH p 25.1 33 0.00073 22.0 0.7 13 299-311 4-16 (32)
210 TIGR03037 anthran_nbaC 3-hydro 25.0 32 0.00069 30.9 0.8 38 205-242 80-125 (159)
211 PF07191 zinc-ribbons_6: zinc- 25.0 33 0.00071 26.7 0.7 12 230-241 16-27 (70)
212 PRK08266 hypothetical protein; 24.7 87 0.0019 32.8 4.1 28 107-134 190-217 (542)
213 PRK14717 putative glycine/sarc 24.6 95 0.0021 25.8 3.4 34 111-145 8-50 (107)
214 PF06906 DUF1272: Protein of u 24.6 36 0.00078 25.3 0.8 12 299-310 42-53 (57)
215 PF02302 PTS_IIB: PTS system, 24.5 35 0.00076 26.3 0.8 13 124-136 1-13 (90)
216 KOG2907 RNA polymerase I trans 24.4 21 0.00046 30.2 -0.4 26 221-246 15-40 (116)
217 PF04574 DUF592: Protein of un 24.3 67 0.0015 28.6 2.6 21 109-129 133-153 (153)
218 PRK11269 glyoxylate carboligas 24.2 60 0.0013 34.5 2.8 24 109-132 81-104 (591)
219 COG1592 Rubrerythrin [Energy p 24.2 61 0.0013 29.3 2.4 11 231-241 134-144 (166)
220 PF08274 PhnA_Zn_Ribbon: PhnA 24.2 32 0.0007 22.3 0.5 10 298-307 2-11 (30)
221 PRK06466 acetolactate synthase 24.1 87 0.0019 33.1 4.0 27 108-134 192-218 (574)
222 PRK06112 acetolactate synthase 24.1 63 0.0014 34.2 2.9 22 326-347 277-298 (578)
223 PRK06882 acetolactate synthase 24.0 77 0.0017 33.4 3.6 27 108-134 192-218 (574)
224 TIGR03457 sulphoacet_xsc sulfo 23.9 62 0.0013 34.3 2.8 25 108-132 76-100 (579)
225 COG1440 CelA Phosphotransferas 23.8 44 0.00095 27.8 1.3 14 123-136 2-15 (102)
226 PLN02573 pyruvate decarboxylas 23.5 55 0.0012 34.8 2.3 28 108-135 210-237 (578)
227 PRK06466 acetolactate synthase 23.4 66 0.0014 34.0 2.9 25 108-132 79-103 (574)
228 PRK07064 hypothetical protein; 23.4 64 0.0014 33.7 2.8 26 106-131 76-101 (544)
229 PRK12474 hypothetical protein; 23.4 72 0.0016 33.3 3.2 24 109-132 81-104 (518)
230 TIGR02418 acolac_catab acetola 23.2 64 0.0014 33.8 2.7 24 108-131 73-96 (539)
231 PRK08199 thiamine pyrophosphat 23.0 68 0.0015 33.8 2.9 24 108-131 83-106 (557)
232 PRK08266 hypothetical protein; 23.0 62 0.0013 33.8 2.6 26 106-131 78-103 (542)
233 PRK06546 pyruvate dehydrogenas 23.0 66 0.0014 34.2 2.8 24 109-132 79-102 (578)
234 PF09986 DUF2225: Uncharacteri 22.9 40 0.00086 31.4 1.0 14 231-244 5-18 (214)
235 PRK07710 acetolactate synthase 22.8 66 0.0014 34.0 2.8 20 326-345 274-293 (571)
236 PF13248 zf-ribbon_3: zinc-rib 22.7 38 0.00083 20.8 0.6 9 299-307 17-25 (26)
237 cd05564 PTS_IIB_chitobiose_lic 22.6 41 0.00089 27.1 0.9 13 124-136 1-13 (96)
238 TIGR00118 acolac_lg acetolacta 22.6 68 0.0015 33.7 2.8 25 108-132 76-100 (558)
239 PRK14715 DNA polymerase II lar 22.5 66 0.0014 37.9 2.8 36 298-333 686-721 (1627)
240 COG2176 PolC DNA polymerase II 22.4 47 0.001 38.6 1.6 20 112-131 718-737 (1444)
241 PRK04351 hypothetical protein; 22.4 60 0.0013 28.7 2.0 17 226-242 107-123 (149)
242 PF04016 DUF364: Domain of unk 22.1 52 0.0011 28.7 1.5 24 325-348 54-77 (147)
243 PRK06276 acetolactate synthase 22.0 72 0.0016 33.9 2.9 20 326-345 262-281 (586)
244 PRK09124 pyruvate dehydrogenas 21.9 71 0.0015 33.7 2.8 30 109-138 79-108 (574)
245 TIGR03393 indolpyr_decarb indo 21.8 76 0.0017 33.3 3.0 25 110-134 193-217 (539)
246 TIGR00354 polC DNA polymerase, 21.7 76 0.0016 36.1 3.0 34 299-333 638-672 (1095)
247 COG1656 Uncharacterized conser 21.7 42 0.00091 30.3 0.9 13 298-310 97-109 (165)
248 PRK10499 PTS system N,N'-diace 21.5 45 0.00097 27.5 1.0 14 123-136 4-17 (106)
249 COG1198 PriA Primosomal protei 21.4 57 0.0012 36.1 2.0 21 221-241 434-454 (730)
250 PF13005 zf-IS66: zinc-finger 21.3 50 0.0011 22.7 1.1 11 299-309 3-13 (47)
251 cd05005 SIS_PHI Hexulose-6-pho 21.2 1E+02 0.0022 27.2 3.3 27 109-136 20-46 (179)
252 PRK07449 2-succinyl-5-enolpyru 21.2 60 0.0013 34.2 2.1 25 108-132 84-108 (568)
253 COG1571 Predicted DNA-binding 21.1 41 0.00088 34.7 0.7 15 297-311 349-363 (421)
254 PRK12454 carbamate kinase-like 21.0 97 0.0021 30.8 3.3 41 98-144 161-201 (313)
255 PRK08155 acetolactate synthase 21.0 77 0.0017 33.4 2.8 22 326-347 270-291 (564)
256 PRK08327 acetolactate synthase 20.9 54 0.0012 34.7 1.7 23 109-131 88-110 (569)
257 TIGR03127 RuMP_HxlB 6-phospho 20.9 96 0.0021 27.2 3.0 26 109-135 17-42 (179)
258 PRK11557 putative DNA-binding 20.8 97 0.0021 29.3 3.2 27 109-136 115-141 (278)
259 TIGR03394 indol_phenyl_DC indo 20.8 64 0.0014 33.9 2.2 27 109-135 188-214 (535)
260 PF01286 XPA_N: XPA protein N- 20.7 85 0.0019 20.9 2.0 13 293-305 19-31 (34)
261 PRK11302 DNA-binding transcrip 20.4 89 0.0019 29.5 2.9 29 109-138 115-143 (284)
262 COG3357 Predicted transcriptio 20.3 52 0.0011 26.9 1.0 12 231-242 58-69 (97)
263 PF13453 zf-TFIIB: Transcripti 20.2 61 0.0013 21.9 1.3 14 300-313 1-14 (41)
264 PF03119 DNA_ligase_ZBD: NAD-d 20.2 51 0.0011 20.8 0.8 10 300-309 1-10 (28)
265 PRK08617 acetolactate synthase 20.1 76 0.0016 33.3 2.6 25 108-132 79-103 (552)
No 1
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.8e-70 Score=499.80 Aligned_cols=259 Identities=61% Similarity=1.035 Sum_probs=242.9
Q ss_pred CCCCCCCCCCCcccccCCcccCCCCCCCHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCC-CCCC-CCCCCCCH
Q 018525 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 158 (354)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~-Gl~~-~~~~p~~~ 158 (354)
+++++.++| .+.+.+.++||++++.++++|.+|..+|..+++++|+|||||||+|||||||+++ |+|. ..++|+++
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 445555555 5567779999999999999999999999999999999999999999999999999 9998 57999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCc-eEEeecccceeeeCCC
Q 018525 159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN-PLELHGTVYTVVCLDC 237 (354)
Q Consensus 159 ~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~k-viELHGsl~~~~C~~C 237 (354)
++|.++.+.|++||++.|.+|++|..++||++|+||++||+.|++.++||||||+||.|||++ +.||||+...+.|.+|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred CcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCC
Q 018525 238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGD 317 (354)
Q Consensus 238 ~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE 317 (354)
++..+|+.||++|+.+||.|.++.+.. -+++||||++|+++. ++.|.+|.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~------------~~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSP------------GHQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCc------------cccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 999999999999999999999876432 147899999999987 6789999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCEEEEEccCCchhccccccC
Q 018525 318 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 354 (354)
Q Consensus 318 ~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv~ 354 (354)
+++.+..+.+.+.+.+||-+||+||||.|++++|+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~ 267 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIR 267 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999863
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6.6e-62 Score=462.33 Aligned_cols=223 Identities=59% Similarity=1.012 Sum_probs=196.5
Q ss_pred HHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHH
Q 018525 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 194 (354)
Q Consensus 115 La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aL 194 (354)
|+++|++|++|||+||||||++||||||||++|+|+..+++++++.|..++..++.||.+.+..|..+.+++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 46789999999999999999999999999999999854788999999999887788998777767677799999999999
Q ss_pred HHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCC
Q 018525 195 ASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (354)
Q Consensus 195 a~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~ 273 (354)
++|+++|++.+||||||||||++||+ +|+||||+++.++|..|++.++++.+.+.+...||.|.+..
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~------------ 148 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQA------------ 148 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhh------------
Confidence 99999999999999999999999998 69999999999999999999998888888888888876532
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018525 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 274 ~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
....|+++..++++... ...+|+||.|||.|||+||||||++|.+.++.|.+++++||++|||||||+|+||++|+
T Consensus 149 ---~~~~~~~~~~~~~~~~~-~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 224 (260)
T cd01409 149 ---AGQAPDGDVDLEDEQVA-GFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224 (260)
T ss_pred ---cccCCCcccccchhhcc-cCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHH
Confidence 12345666655433222 34589999999999999999999999999999999999999999999999999999886
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.8e-59 Score=449.63 Aligned_cols=228 Identities=50% Similarity=0.863 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCCC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (354)
.++|+.|+++|+++++|||+||||||++||||||||++|+|. .+.++++.+|...+..++.||.+.+..|+.+.+++||
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn 84 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWK-RSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPN 84 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccc-cCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCC
Confidence 378999999999999999999999999999999999999997 5778889999888888889998877777777789999
Q ss_pred HHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCC
Q 018525 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (354)
Q Consensus 189 ~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~ 267 (354)
.+|++|++|+++|++.+||||||||||++||+ +|+|+||++..++|++|++.++++.+.+.+...+|.|.+..
T Consensus 85 ~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~------ 158 (285)
T PRK05333 85 AAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALE------ 158 (285)
T ss_pred HHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhh------
Confidence 99999999999999999999999999999998 69999999999999999999988877776766667665432
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchh
Q 018525 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 268 ~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~ 347 (354)
..+.++++++.+.... ....+|+||.|||.|||+||||||++|++.++.+.+++++||++|||||||.|+
T Consensus 159 ---------~~~~~~~~~~~~~~~~-~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~ 228 (285)
T PRK05333 159 ---------AAPAPDGDADLEWAAF-DHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVY 228 (285)
T ss_pred ---------cccCCCcccccccccc-ccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceec
Confidence 1233445554432221 234589999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 018525 348 SAYRLV 353 (354)
Q Consensus 348 pA~~Lv 353 (354)
|++.|+
T Consensus 229 p~~~~~ 234 (285)
T PRK05333 229 SGYRFC 234 (285)
T ss_pred chhhhH
Confidence 998875
No 4
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1.7e-56 Score=427.26 Aligned_cols=200 Identities=29% Similarity=0.557 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCC-CCCCCCCCCCC---CHHHHHhchHHHHHHHHHHHHHhhhhcc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFKPI---THQQFVRSSRARRRYWARSYAGWRRFMA 184 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~-~Gl~~~~~~p~---~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 184 (354)
...++.|+++|+++++|||+||||||++||||||||+ +|+|. .|++. ++..|..+ +..+|.++.. +....+
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~-~~~~~~~~t~~~f~~~---p~~~~~~~~~-~~~~~~ 89 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWS-KYDPKIYGTIWGFWKY---PEKIWEVIRD-ISSDYE 89 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCcccc-CCCHHHhccHHHHHHC---hHHHHHHHHH-hhhccc
Confidence 3568899999999999999999999999999999998 69997 56663 44555554 4466654322 223347
Q ss_pred CCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhh
Q 018525 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 263 (354)
Q Consensus 185 a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~ 263 (354)
++||.+|++|++|++.|++.+||||||||||++||+ +|+||||+++.++|.+|++.+..+.. +...++.+
T Consensus 90 a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~---~~~~~~~~------ 160 (271)
T PTZ00409 90 IELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKI---MLQKTSHF------ 160 (271)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHH---HHhhhhhh------
Confidence 999999999999999999999999999999999998 69999999999999999987653321 10000000
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccC
Q 018525 264 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343 (354)
Q Consensus 264 l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTS 343 (354)
. ...+|+|+ |||.|||+||||||++|++.++.|.+++++||++||||||
T Consensus 161 -----------------------------~-~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTS 209 (271)
T PTZ00409 161 -----------------------------M-HQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTS 209 (271)
T ss_pred -----------------------------c-cCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCC
Confidence 0 11268999 9999999999999999999999999999999999999999
Q ss_pred Cchhcccccc
Q 018525 344 LMTMSAYRLV 353 (354)
Q Consensus 344 L~V~pA~~Lv 353 (354)
|+|+||++|+
T Consensus 210 l~V~pa~~l~ 219 (271)
T PTZ00409 210 SSVSTATNLC 219 (271)
T ss_pred CcccCHHHHH
Confidence 9999999987
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=4.4e-56 Score=418.69 Aligned_cols=196 Identities=43% Similarity=0.739 Sum_probs=169.9
Q ss_pred HHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCC
Q 018525 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (354)
Q Consensus 112 i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (354)
++.++++|.+|++|||+|||||||+|||||||+.+|+|..+|+| ++++.|.++ +..||.++.........++||
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~---p~~~~~f~~~~~~~~~~a~Pn 78 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRD---PELVWDFYSERLRLLYLAQPN 78 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhC---HHHHHHHHHHHHHhhhcCCCC
Confidence 57889999999999999999999999999999999999756776 477777764 557887655444445568999
Q ss_pred HHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCC
Q 018525 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (354)
Q Consensus 189 ~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~ 267 (354)
.+|++|++|++.|++++|||||||+||++||+ +|+||||++..++|+.|+..++.+......
T Consensus 79 ~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~----------------- 141 (250)
T COG0846 79 KAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKFI----------------- 141 (250)
T ss_pred HHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhhc-----------------
Confidence 99999999999999999999999999999999 699999999999999999887643311000
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC-eeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCch
Q 018525 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (354)
Q Consensus 268 ~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG-~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V 346 (354)
....+|+||+||+ .|||+||||||.+|.+.++.+.+++++||++||+||||.|
T Consensus 142 --------------------------~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V 195 (250)
T COG0846 142 --------------------------EDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKV 195 (250)
T ss_pred --------------------------ccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEE
Confidence 0124799999999 9999999999999999999999999999999999999999
Q ss_pred hcccccc
Q 018525 347 MSAYRLV 353 (354)
Q Consensus 347 ~pA~~Lv 353 (354)
+||++++
T Consensus 196 ~Paa~~p 202 (250)
T COG0846 196 YPAAGLP 202 (250)
T ss_pred cChhhhh
Confidence 9999864
No 6
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.2e-55 Score=415.92 Aligned_cols=194 Identities=35% Similarity=0.704 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCC-C-CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHH
Q 018525 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK-P-ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPA 190 (354)
Q Consensus 113 ~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~-p-~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~ 190 (354)
++|+++|++|++|||+||||||++||||||||++|+|++ +. . .+...|..+++ .+|+++...+..+.+++||.+
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~-~~~~~~~~~~~~~~p~---~~w~~~~~~~~~~~~~~Pn~~ 77 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKK-YPQNVFDIDFFYSHPE---EFYRFAKEGIFPMLEAKPNLA 77 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccC-CcccccCHHHHHhCHH---HHHHHHHHhhcccccCCCCHH
Confidence 578999999999999999999999999999999999974 32 2 35666666654 455544444444568999999
Q ss_pred HHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCC
Q 018525 191 HFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSP 269 (354)
Q Consensus 191 H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~ 269 (354)
|++|++|+++|++.+||||||||||++||+ +|+|+||+++.++|.+|++.|+.+.+.+.+.
T Consensus 78 H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~------------------ 139 (244)
T PRK14138 78 HVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLE------------------ 139 (244)
T ss_pred HHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHHh------------------
Confidence 999999999999999999999999999998 6999999999999999999887654432110
Q ss_pred CCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcc
Q 018525 270 GSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSA 349 (354)
Q Consensus 270 ~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA 349 (354)
...+|+||.|||.|||+||||||++|+..++.+.+++++||++|||||||.|+||
T Consensus 140 -------------------------~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa 194 (244)
T PRK14138 140 -------------------------KSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPA 194 (244)
T ss_pred -------------------------cCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecH
Confidence 1237999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 018525 350 YRLV 353 (354)
Q Consensus 350 ~~Lv 353 (354)
++|+
T Consensus 195 ~~l~ 198 (244)
T PRK14138 195 AELP 198 (244)
T ss_pred hHHH
Confidence 9986
No 7
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=2.3e-55 Score=408.58 Aligned_cols=187 Identities=46% Similarity=0.802 Sum_probs=159.4
Q ss_pred HHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHH
Q 018525 119 FDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 195 (354)
Q Consensus 119 l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa 195 (354)
|++|++|||+||||||++|||||||+++|+|+ .|.+ .+...|..+++ .+|+++...+..+.+++||.+|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~-~~~~~~~~~~~~f~~~p~---~~w~~~~~~~~~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWK-KYDPEEVASIDYFYRNPE---EFWRFYKEIILGLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcC-CCCHHHhccHHHHhHCHH---HHHHHHHHHhcccCCCCCCHHHHHHH
Confidence 46789999999999999999999999999997 4554 25666666554 55554444444456899999999999
Q ss_pred HHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 018525 196 SLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (354)
Q Consensus 196 ~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~ 274 (354)
+|++.|++.+||||||||||+|||. +|+|+||+++.++|++|++.++++.+.. +
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~~-~------------------------ 131 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVKY-A------------------------ 131 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHHH-h------------------------
Confidence 9999999999999999999999998 6999999999999999998876543200 0
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018525 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 275 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
....+|+||.|||.|||+||||||.+|++.++.|.+++++||++|||||||+|+||++|+
T Consensus 132 -------------------~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~ 191 (222)
T cd01413 132 -------------------KKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLP 191 (222)
T ss_pred -------------------ccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHH
Confidence 012479999999999999999999999999999999999999999999999999999986
No 8
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=6e-54 Score=402.34 Aligned_cols=183 Identities=34% Similarity=0.622 Sum_probs=152.6
Q ss_pred CcEEEEECCccCccCCCCCcCCCC-CCCCCC-----CCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHH
Q 018525 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 193 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~~-Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~a 193 (354)
|+|||+||||||++||||||||++ |+|... +.+ .+++.|.+++ +.||.++..... .+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p---~~~~~~~~~~~~--~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNP---RPFYALAKELYP--GQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHCh---HHHHHHHHHHhc--CcCCCCHHHHH
Confidence 579999999999999999999999 999741 122 3555666654 456643322221 48999999999
Q ss_pred HHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCC
Q 018525 194 LASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (354)
Q Consensus 194 La~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~ 270 (354)
|++|+++|++.+||||||||||+|||+ +|+||||+++.++|.+|++.|+++.+...+.
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~------------------- 136 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF------------------- 136 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-------------------
Confidence 999999999999999999999999996 6999999999999999999887654321110
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhccc
Q 018525 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 350 (354)
Q Consensus 271 ~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~ 350 (354)
...+|+||.|||.|||+||||||.+|++.++.+.+++++||++|||||||+|+||+
T Consensus 137 ------------------------~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~ 192 (235)
T cd01408 137 ------------------------NQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFA 192 (235)
T ss_pred ------------------------CCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHH
Confidence 11369999999999999999999999998889999999999999999999999999
Q ss_pred ccc
Q 018525 351 RLV 353 (354)
Q Consensus 351 ~Lv 353 (354)
.|+
T Consensus 193 ~l~ 195 (235)
T cd01408 193 SLP 195 (235)
T ss_pred HHH
Confidence 886
No 9
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6e-54 Score=395.08 Aligned_cols=172 Identities=40% Similarity=0.654 Sum_probs=147.2
Q ss_pred CcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHcCC
Q 018525 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGR 202 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L~~~G~ 202 (354)
|+|||+||||||++||||||||++|+|.. +++ +. ..+..+|.+ .+++||.+|++|++|++.|+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~-~~~-----~~---~~~~~~~~~--------~~~~Pn~~H~~La~l~~~g~ 63 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTL-LPE-----DK---GRRRFSWRF--------RRAEPTLTHMALVELERAGL 63 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCccc-CCc-----cc---cChHHHhhh--------hcCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999999974 333 12 234455642 25899999999999999999
Q ss_pred CceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCccc
Q 018525 203 IDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQ 279 (354)
Q Consensus 203 l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~~~~~~ 279 (354)
+.+||||||||||++||+ +|+||||+++.++|+.|++.++.+.+.+.+.
T Consensus 64 ~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~---------------------------- 115 (206)
T cd01410 64 LKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRG---------------------------- 115 (206)
T ss_pred CceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhh----------------------------
Confidence 999999999999999996 5999999999999999998876554321110
Q ss_pred CCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018525 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 280 ~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
....+|+|+.|||.|||+||||||.+|+..++.|.+++++||++|||||||.|+||++|+
T Consensus 116 --------------~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 175 (206)
T cd01410 116 --------------DKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLP 175 (206)
T ss_pred --------------cCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHH
Confidence 012379999999999999999999999999999999999999999999999999999986
No 10
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.2e-53 Score=401.46 Aligned_cols=192 Identities=43% Similarity=0.768 Sum_probs=164.5
Q ss_pred HHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCC
Q 018525 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (354)
Q Consensus 111 ~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~P 187 (354)
++++|+++|++|++|||+||||||++|||||||+.+|+|. .|.+ .+...|..++ ..+|+++......+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~-~~~~~~~~~~~~~~~~p---~~~w~f~~~~~~~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWE-EHRPEDVASPEGFARDP---ELVWKFYNERRRQLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCcc-CCCHHHhccHHHHhhCH---HHHHHHHHHHHHHhccCCC
Confidence 5788999999999999999999999999999999999997 4554 2455565544 4555543333334458999
Q ss_pred CHHHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcC
Q 018525 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266 (354)
Q Consensus 188 n~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~ 266 (354)
|.+|++|++|++.|++.+||||||||||++||. +|+|+||++..++|+.|++.|+.+.+.
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------------------- 138 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL------------------- 138 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc-------------------
Confidence 999999999999999999999999999999998 699999999999999999877543210
Q ss_pred CCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCch
Q 018525 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (354)
Q Consensus 267 ~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V 346 (354)
...+|+||.|||.|||+||||||.+|++.++.+.+++++||++|||||||.|
T Consensus 139 ----------------------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V 190 (242)
T PRK00481 139 ----------------------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVV 190 (242)
T ss_pred ----------------------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceE
Confidence 0126889999999999999999999999999999999999999999999999
Q ss_pred hcccccc
Q 018525 347 MSAYRLV 353 (354)
Q Consensus 347 ~pA~~Lv 353 (354)
+|+++|+
T Consensus 191 ~p~~~l~ 197 (242)
T PRK00481 191 YPAAGLP 197 (242)
T ss_pred cCHhHHH
Confidence 9999986
No 11
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.8e-53 Score=396.74 Aligned_cols=185 Identities=34% Similarity=0.674 Sum_probs=157.2
Q ss_pred HHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCC--CCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCH
Q 018525 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG--FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (354)
Q Consensus 115 La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~--~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (354)
|+++|++|++|||+||||||++|||||||+++|+|+.. +.+ .+...|..+++ .+|+++... ..+.+++||.
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~-~~~~~~~Pn~ 76 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPE---KFYQFVKEN-LYFPDAKPNI 76 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHH---HHHHHHHHH-hhCCCCCCCH
Confidence 46789999999999999999999999999999999853 444 24555666554 455432221 2345899999
Q ss_pred HHHHHHHHHHcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 018525 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (354)
Q Consensus 190 ~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (354)
+|++|++|++.| +.+||||||||||++||. +|+||||+++.++|++|+..++++.
T Consensus 77 ~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------- 132 (225)
T cd01411 77 IHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEE----------------------- 132 (225)
T ss_pred HHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhh-----------------------
Confidence 999999999888 899999999999999998 6999999999999999987764321
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhc
Q 018525 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (354)
Q Consensus 269 ~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~p 348 (354)
...+|+||.|||.|||+||||||.+|++.++.+.+++++||++|||||||.|+|
T Consensus 133 --------------------------~~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p 186 (225)
T cd01411 133 --------------------------YLKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYP 186 (225)
T ss_pred --------------------------cCCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehh
Confidence 012699999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 018525 349 AYRLV 353 (354)
Q Consensus 349 A~~Lv 353 (354)
+++|+
T Consensus 187 ~~~l~ 191 (225)
T cd01411 187 FAGLI 191 (225)
T ss_pred HHHHH
Confidence 99986
No 12
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=5.8e-53 Score=391.04 Aligned_cols=183 Identities=46% Similarity=0.835 Sum_probs=154.4
Q ss_pred CcEEEEECCccCccCCCCCcCCCCCCCCCCCCC----CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH
Q 018525 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP----ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p----~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L~ 198 (354)
|+|||+||||||++|||||||+++|+|+. +.+ .+...|..+++ .+|+++..... +.+++||.+|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~-~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~-~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWAR-LDPEELAFSPEAFRRDPE---LFWGFYRERRY-PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCcccc-CChhhccCCHHHHHHCHH---HHHHHHHHhhh-hccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999974 443 25555666544 55554433333 56899999999999999
Q ss_pred HcCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCc
Q 018525 199 KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGM 277 (354)
Q Consensus 199 ~~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~~~~ 277 (354)
+.|++.+||||||||||++||+ +|+|+||++..++|+.|++.++.+.+...+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------- 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADI--------------------------- 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhh---------------------------
Confidence 9999999999999999999998 699999999999999999887654321000
Q ss_pred ccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhccccccC
Q 018525 278 KQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 354 (354)
Q Consensus 278 ~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv~ 354 (354)
....+|+||.|||.|||+||||||++|+. ++++.+++++||++|||||||.|+||++|++
T Consensus 129 ----------------~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~ 188 (218)
T cd01407 129 ----------------DREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPL 188 (218)
T ss_pred ----------------ccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHH
Confidence 02247999999999999999999999999 9999999999999999999999999999873
No 13
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=2.7e-52 Score=408.23 Aligned_cols=197 Identities=28% Similarity=0.538 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCC-CCCCCCC--C---CC---CCHHHHHhchHHHHHHHHHHHH
Q 018525 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--F---KP---ITHQQFVRSSRARRRYWARSYA 177 (354)
Q Consensus 109 ~~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~-~Gl~~~~--~---~p---~~~~~f~~~~~~~~~~w~~~~~ 177 (354)
...++.|+++|++ +++|||+||||||++||||||||+ +|+|... | .| ++...|.++ +..||.++..
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~---P~~f~~~~r~ 90 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREK---PEVFYSIARE 90 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHC---HHHHHHHHHH
Confidence 3568899999998 679999999999999999999999 5999742 2 22 234445444 4456653211
Q ss_pred Hhhhh-ccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhh
Q 018525 178 GWRRF-MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKAL 253 (354)
Q Consensus 178 ~~~~~-~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~ 253 (354)
...+ .+++||.+|++|+.|++.|++.+||||||||||++||+ +|+||||+++.++|..|++.|+.+.....+
T Consensus 91 -~~~~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~--- 166 (349)
T PTZ00410 91 -MDLWPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA--- 166 (349)
T ss_pred -hhcccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh---
Confidence 1111 25899999999999999999999999999999999996 599999999999999999877654321000
Q ss_pred ChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhc
Q 018525 254 NPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKE 333 (354)
Q Consensus 254 np~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~ 333 (354)
....+|+|+.|||.|||+||||||++|++.++ +.+++++
T Consensus 167 ----------------------------------------~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~ 205 (349)
T PTZ00410 167 ----------------------------------------RSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPE 205 (349)
T ss_pred ----------------------------------------hcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHh
Confidence 01247999999999999999999999998887 9999999
Q ss_pred CCEEEEEccCCchhcccccc
Q 018525 334 CDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 334 aDllLVvGTSL~V~pA~~Lv 353 (354)
||++|||||||+|+||+.|+
T Consensus 206 aDllLVIGTSL~V~Paa~l~ 225 (349)
T PTZ00410 206 AELLLIIGTSLQVHPFALLA 225 (349)
T ss_pred CCEEEEECcCCcccCHHHHH
Confidence 99999999999999999876
No 14
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=8.7e-52 Score=389.17 Aligned_cols=182 Identities=34% Similarity=0.567 Sum_probs=148.8
Q ss_pred HcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHH
Q 018525 120 DNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALAS 196 (354)
Q Consensus 120 ~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~ 196 (354)
++|++|||+||||||++||||||||++|+|. .+++ .+.+.|..++...++||.+.... ..+.+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~-~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~-~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWE-NHRVEDVATPDAFLRNPALVQRFYNERRRA-LLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCC-CCChhhcCCHHHHHhCHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999997 4554 47777887766555555321111 11257899999999999
Q ss_pred HHHc--CCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCC
Q 018525 197 LEKA--GRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (354)
Q Consensus 197 L~~~--G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~ 273 (354)
|++. |++.+||||||||||++||+ +|+|+||+++.++|++|++.++++.. +
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---~----------------------- 133 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED---V----------------------- 133 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---h-----------------------
Confidence 9976 88899999999999999998 69999999999999999987643210 0
Q ss_pred CcCcccCCCCCcccccccccccCCCCCCCCCC--CeeeceEEEcCC-CCCHHHHHHHHHHhhcCCEEEEEccCCchhccc
Q 018525 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCN--GVLKPDVVFFGD-NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 350 (354)
Q Consensus 274 ~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cg--G~LrP~VVlFGE-~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~ 350 (354)
...+|+||.|| |.|||+|||||| .++.+.++. ++.+||++|||||||+|+||+
T Consensus 134 ---------------------~~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~~---~~~~~DlllviGTSl~V~pa~ 189 (242)
T PTZ00408 134 ---------------------VHGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIES---VMSKTDLFVAVGTSGNVYPAA 189 (242)
T ss_pred ---------------------hcCCCccccCCCCCCCCCCEEEcCCCCCcHHHHHH---HHHhCCEEEEEccCCccccHH
Confidence 01268999998 999999999999 788765554 478999999999999999999
Q ss_pred ccc
Q 018525 351 RLV 353 (354)
Q Consensus 351 ~Lv 353 (354)
+|+
T Consensus 190 ~l~ 192 (242)
T PTZ00408 190 GFV 192 (242)
T ss_pred HHH
Confidence 987
No 15
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2.8e-51 Score=380.87 Aligned_cols=180 Identities=43% Similarity=0.733 Sum_probs=152.7
Q ss_pred CcEEEEECCccCccCCCCCcCCCCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHH
Q 018525 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEK 199 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L~~ 199 (354)
++|||+||||||++|||||||+++|+|+ .|.+ .+...|..+++ .+|+++......+.+++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~-~~~~~~~~~~~~f~~~p~---~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWA-RFDPEELATPEAFARDPE---LVWEFYNWRRRKALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcC-CCChhhcCCHHHHHHCHH---HHHHHHHHHHHHccccCCCHHHHHHHHHHh
Confidence 5799999999999999999999999997 4554 36666766544 566543333333568999999999999999
Q ss_pred cCCCceeeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcc
Q 018525 200 AGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMK 278 (354)
Q Consensus 200 ~G~l~~VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~~~~~ 278 (354)
++++++||||||||||++||+ +|+|+||+++.++|..|++.+..+..
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~-------------------------------- 124 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE-------------------------------- 124 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh--------------------------------
Confidence 998999999999999999998 69999999999999999987643210
Q ss_pred cCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018525 279 QRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 279 ~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
+ ....+|+||.|||.|||+||||||.+|+ .++.+.++++++|++|||||||.|.|+++|+
T Consensus 125 --------~------~~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~ 184 (224)
T cd01412 125 --------I------PEEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLP 184 (224)
T ss_pred --------h------hccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHH
Confidence 0 0124799999999999999999999999 8999999999999999999999999999986
No 16
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=2.8e-51 Score=368.28 Aligned_cols=173 Identities=42% Similarity=0.779 Sum_probs=129.2
Q ss_pred CCccCccCCCCCcCC-CCCCCCCCCCC---CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHcCCCce
Q 018525 130 GAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDC 205 (354)
Q Consensus 130 GAGISaaSGIPDFRg-~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L~~~G~l~~ 205 (354)
|||||++|||||||| ++|+|+. +++ .+.+.|...+...+..|.+++..+. ..+++||.+|++|++|++.|++.+
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~-~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~-~~~a~Pn~~H~~La~L~~~g~~~~ 78 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTK-YKPEELATPEAFFSDPEFVWEKFYRFRRKVI-SKDAEPNPGHRALAELEKKGKLKR 78 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHH-CHHHHHSSHHHHHHHHHHHHHHHHHHHHHHC-TCTS---HHHHHHHHHHHTTSEEE
T ss_pred CCccchhhCCCccccCCCCccee-eeccccccccccccccchhhhHHHHHhhhhc-cccCCCChhHHHHHHHHHhhhhcc
Confidence 999999999999999 9999984 332 3455566554433332222221111 128999999999999999999999
Q ss_pred eeecCCcchhhhhCC-ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCC
Q 018525 206 MITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 284 (354)
Q Consensus 206 VITQNIDgLh~rAG~-kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~~~~~~~pd~d 284 (354)
||||||||||++||+ +|+||||+++.++|..|++.++.+.+.+.+.
T Consensus 79 viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~--------------------------------- 125 (178)
T PF02146_consen 79 VITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSID--------------------------------- 125 (178)
T ss_dssp EEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHH---------------------------------
T ss_pred ceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccc---------------------------------
Confidence 999999999999998 7999999999999999999987655432220
Q ss_pred cccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhc
Q 018525 285 IEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 348 (354)
Q Consensus 285 ~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~p 348 (354)
....|+||.|||.|||+||||||.+| +.+..|.+++++||++|||||||+|+|
T Consensus 126 ----------~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 126 ----------EEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp ----------TTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ----------ccccccccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 12368999999999999999999999 788999999999999999999999998
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=1.3e-46 Score=347.21 Aligned_cols=181 Identities=45% Similarity=0.772 Sum_probs=152.1
Q ss_pred CcEEEEECCccCccCCCCCcCCCC-CCCCCCCCC----CCHHHHHhchHHHHHHHHHHHHHhhhhccCCCCHHHHHHHHH
Q 018525 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSGFKP----ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASL 197 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~~-Gl~~~~~~p----~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~L 197 (354)
+++|++||||||++|||||||+.+ |+|.. +.. .+...|..++ ..+|.++...+....+++||.+|++|++|
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~P~~~H~~l~~l 76 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTR-LDPEELAFSPEAFRRDP---ELFWLFYKERRYTPLDAKPNPAHRALAEL 76 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhc-CCcccccCCHHHHHHCH---HHHHHHHHHHHhhhCcCCCCHHHHHHHHH
Confidence 579999999999999999999999 99974 322 1445555543 35565433333335589999999999999
Q ss_pred HHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCC
Q 018525 198 EKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (354)
Q Consensus 198 ~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~~~~~~~ 274 (354)
++.|++.+|||||||+||++||+ +|+|+||++...+|..|+..++++.+..
T Consensus 77 ~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~-------------------------- 130 (222)
T cd00296 77 ERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE-------------------------- 130 (222)
T ss_pred HHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhh--------------------------
Confidence 99999999999999999999998 5999999999999999998765433210
Q ss_pred cCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCchhcccccc
Q 018525 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 275 ~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv 353 (354)
...+|+||.|||.|||+|++|||.+|+..+..+.+++.+||++|||||||.|+|+.+|+
T Consensus 131 --------------------~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~ 189 (222)
T cd00296 131 --------------------REKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLL 189 (222)
T ss_pred --------------------ccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHH
Confidence 02379999999999999999999999988999999999999999999999999999886
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.8e-46 Score=363.66 Aligned_cols=201 Identities=30% Similarity=0.549 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCC--CCCHHHHHhchHH---HHHHHHHHHHHhhhhc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRA---RRRYWARSYAGWRRFM 183 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~--p~~~~~f~~~~~~---~~~~w~~~~~~~~~~~ 183 (354)
-+.++.+..+|++||+|||+||||||+++|||||||.+|+|.+--. .-+.++++..+-. +..|+.. ...-.-.
T Consensus 75 ~~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~--a~~l~~~ 152 (412)
T KOG2684|consen 75 FNTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRF--ARELKPP 152 (412)
T ss_pred cccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHH--HHHhcCC
Confidence 4678888999999999999999999999999999999999984211 1244444433221 1222221 1111113
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHH
Q 018525 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEA 260 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~ 260 (354)
...|++.|.+|+.|+++|++.++||||||+|+++||. +++++||++....|+.|+..++.+.+.+.+
T Consensus 153 ~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~---------- 222 (412)
T KOG2684|consen 153 SNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDI---------- 222 (412)
T ss_pred ccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHH----------
Confidence 5669999999999999999999999999999999997 499999999999999999988765432111
Q ss_pred HhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCC------------------eeeceEEEcCCCCCHH
Q 018525 261 IESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG------------------VLKPDVVFFGDNVPKD 322 (354)
Q Consensus 261 ~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG------------------~LrP~VVlFGE~lp~~ 322 (354)
....+|.||.|.+ .|||+||||||++|+.
T Consensus 223 ---------------------------------~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~ 269 (412)
T KOG2684|consen 223 ---------------------------------RNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDS 269 (412)
T ss_pred ---------------------------------hcCcCccCcccccccccccCccccccccCccccccceEEecCCCChH
Confidence 1235789999955 9999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEccCCchhccccccC
Q 018525 323 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 354 (354)
Q Consensus 323 ~~~~A~~~~~~aDllLVvGTSL~V~pA~~Lv~ 354 (354)
...........|||||||||||+|+|++++|+
T Consensus 270 ~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~ 301 (412)
T KOG2684|consen 270 FHIGVGADLDECDLLIVIGTSLKVRPVAEIVK 301 (412)
T ss_pred HHhhhhccccccceEEEeCCccccccHHHHHh
Confidence 99888888899999999999999999999874
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.5e-41 Score=311.95 Aligned_cols=196 Identities=29% Similarity=0.546 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHc--CCcEEEEECCccCccCCCCCcCCCC-CCCCC--CCCC------CCHHHHHhchHHHHHHHHHHHHH
Q 018525 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFKP------ITHQQFVRSSRARRRYWARSYAG 178 (354)
Q Consensus 110 ~~i~~La~~l~~--ak~iVVlTGAGISaaSGIPDFRg~~-Gl~~~--~~~p------~~~~~f~~~~~~~~~~w~~~~~~ 178 (354)
-.++++|+++++ ++++++.-||||||++||||||+++ |+|.. .|+. +....|..++ ..||.-....
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP---~PF~tLAkEL 98 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNP---EPFFTLAKEL 98 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCC---chHHHHHHHh
Confidence 358888888875 6889999999999999999999996 99984 2321 2334444443 3444322222
Q ss_pred hhhhccCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeC-CCCcccchhhHHHHHHhhC
Q 018525 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCL-DCGFSFCRDLFQDQVKALN 254 (354)
Q Consensus 179 ~~~~~~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~-~C~~~~~~~~~~~~l~~~n 254 (354)
+. .+.+||.+||+|+-|.++|.+.++||||||+|++.||. .++|.||++...+|+ .|++.|+.+.+...+.
T Consensus 99 yP--gnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~--- 173 (314)
T KOG2682|consen 99 YP--GNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM--- 173 (314)
T ss_pred CC--CCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH---
Confidence 22 38999999999999999999999999999999999998 489999999999999 5999998766543221
Q ss_pred hhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcC
Q 018525 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKEC 334 (354)
Q Consensus 255 p~~~~~~~~l~~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~a 334 (354)
...+|+|+.|+|.+||+||||||.+|...++..+.....+
T Consensus 174 ----------------------------------------~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~ 213 (314)
T KOG2682|consen 174 ----------------------------------------SEVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKV 213 (314)
T ss_pred ----------------------------------------hccCCCCchhhccccccEEEecCCccHHHHHHHhhccccc
Confidence 1247999999999999999999999999998888889999
Q ss_pred CEEEEEccCCchhcccccc
Q 018525 335 DAFLVLGSSLMTMSAYRLV 353 (354)
Q Consensus 335 DllLVvGTSL~V~pA~~Lv 353 (354)
|++|||||||.|+|.++|.
T Consensus 214 dl~lV~GTSL~V~PFAsLp 232 (314)
T KOG2682|consen 214 DLLLVMGTSLQVQPFASLP 232 (314)
T ss_pred ceEEEeccceeeeecccch
Confidence 9999999999999999885
No 20
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.7e-39 Score=301.14 Aligned_cols=192 Identities=35% Similarity=0.572 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCCCCCCCCCHHHHHhchHHHHHHHHHHHHHhhhhccCCCC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (354)
..++++|++++++|+++||+|||||||+||||||||++|.|+..-+ ..+ ..-..|..|.|+
T Consensus 42 ~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~k-------G~~------------~~~~df~~ArPt 102 (353)
T KOG1905|consen 42 RTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQK-------GKD------------KFGVDFSEARPT 102 (353)
T ss_pred HHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhc-------Ccc------------ccCCchhhcCCc
Confidence 4789999999999999999999999999999999999999983111 000 011245689999
Q ss_pred HHHHHHHHHHHcCCCceeeecCCcchhhhhCC---ceEEeecccceeeeCCCCcccchhhHHHHHHhhChhhHHHHhhhc
Q 018525 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS---NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (354)
Q Consensus 189 ~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~---kviELHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~ 265 (354)
.+|++|.+|++.|.+.+||||||||||.|+|. ++.|||||++..+|.+|...|.++...+.+.
T Consensus 103 ~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~g-------------- 168 (353)
T KOG1905|consen 103 VTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVG-------------- 168 (353)
T ss_pred chHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecc--------------
Confidence 99999999999999999999999999999998 5899999999999999999887765322110
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccCCc
Q 018525 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 266 ~~~~~~~~~~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTSL~ 345 (354)
++ +.+... .....-+|..|-|.|+..++-+...+|...|+.|.++.+.||++|++||||+
T Consensus 169 -----------l~--at~R~c-------t~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLq 228 (353)
T KOG1905|consen 169 -----------LK--ATGRHC-------TGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQ 228 (353)
T ss_pred -----------cc--cccccc-------cccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceE
Confidence 00 001000 0112245667778899999999999999999999999999999999999999
Q ss_pred hhcccccc
Q 018525 346 TMSAYRLV 353 (354)
Q Consensus 346 V~pA~~Lv 353 (354)
|.|...|.
T Consensus 229 I~p~g~lp 236 (353)
T KOG1905|consen 229 ILPKGNLP 236 (353)
T ss_pred eeeCCCcc
Confidence 99998764
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.78 E-value=1.7e-08 Score=94.65 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=65.3
Q ss_pred CcEEEEECCccCccCCCCCcCCC-CCCCCC---CC--------CCCCHH---HHHhchHHHHHHHHHHHHHhhh-hccCC
Q 018525 123 AKLIVLTGAGISTECGIPDYRSP-NGAYSS---GF--------KPITHQ---QFVRSSRARRRYWARSYAGWRR-FMAAQ 186 (354)
Q Consensus 123 k~iVVlTGAGISaaSGIPDFRg~-~Gl~~~---~~--------~p~~~~---~f~~~~~~~~~~w~~~~~~~~~-~~~a~ 186 (354)
+++|++.|||+|.++|+|++++- ..++.. .. ....+. ++...... ...+......+.. ....+
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFG-TIGIKINAVLEEKTRPDFE 79 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhc-cchhhhHHHHHhccCCCCC
Confidence 47999999999999999998742 111110 00 000111 11110000 0001000001111 23678
Q ss_pred CCHHHHHHHHHHHcCC-CceeeecCCcchhhhhC-----------------------CceEEeecccceee
Q 018525 187 PNPAHFALASLEKAGR-IDCMITQNVDRLHHRAG-----------------------SNPLELHGTVYTVV 233 (354)
Q Consensus 187 Pn~~H~aLa~L~~~G~-l~~VITQNIDgLh~rAG-----------------------~kviELHGsl~~~~ 233 (354)
|+..|.+|++|...+. ...|||+|.|.|.++|- ..|+.|||++....
T Consensus 80 ~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~~ 150 (242)
T cd01406 80 PSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDDE 150 (242)
T ss_pred CCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCCC
Confidence 9999999999987654 56899999999998761 03799999998753
No 22
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=90.69 E-value=0.16 Score=44.78 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=10.5
Q ss_pred cceeeeCCCCccc
Q 018525 229 VYTVVCLDCGFSF 241 (354)
Q Consensus 229 l~~~~C~~C~~~~ 241 (354)
...++|.+|++..
T Consensus 110 ~G~l~C~~Cg~~~ 122 (146)
T PF07295_consen 110 PGTLVCENCGHEV 122 (146)
T ss_pred CceEecccCCCEE
Confidence 4578999999864
No 23
>PRK11032 hypothetical protein; Provisional
Probab=90.56 E-value=0.17 Score=45.23 Aligned_cols=13 Identities=23% Similarity=0.628 Sum_probs=10.4
Q ss_pred cceeeeCCCCccc
Q 018525 229 VYTVVCLDCGFSF 241 (354)
Q Consensus 229 l~~~~C~~C~~~~ 241 (354)
+..++|.+|++..
T Consensus 122 ~G~LvC~~Cg~~~ 134 (160)
T PRK11032 122 LGNLVCEKCHHHL 134 (160)
T ss_pred cceEEecCCCCEE
Confidence 4568999999874
No 24
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=85.34 E-value=0.66 Score=31.22 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=10.0
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
...+|..|++.+.
T Consensus 4 Y~y~C~~Cg~~fe 16 (41)
T smart00834 4 YEYRCEDCGHTFE 16 (41)
T ss_pred EEEEcCCCCCEEE
Confidence 4568999998763
No 25
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.14 E-value=1.6 Score=30.09 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=10.7
Q ss_pred cceeeeCCCCcccc
Q 018525 229 VYTVVCLDCGFSFC 242 (354)
Q Consensus 229 l~~~~C~~C~~~~~ 242 (354)
++..+|.+|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 35678999998763
No 26
>PRK06260 threonine synthase; Validated
Probab=79.73 E-value=1.3 Score=44.73 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.6
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
..++|..|++.|+
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 4689999998874
No 27
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=78.65 E-value=1.5 Score=29.27 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.3
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
...|.+|+..|.
T Consensus 2 ~~~CP~C~~~~~ 13 (38)
T TIGR02098 2 RIQCPNCKTSFR 13 (38)
T ss_pred EEECCCCCCEEE
Confidence 367999998764
No 28
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=77.99 E-value=1.1 Score=38.83 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=8.9
Q ss_pred eeeCCCCcccc
Q 018525 232 VVCLDCGFSFC 242 (354)
Q Consensus 232 ~~C~~C~~~~~ 242 (354)
.+|++|++.|.
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 37999998874
No 29
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=75.33 E-value=3.4 Score=46.25 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=15.2
Q ss_pred Eeecccc-----eeeeCCCCcccch
Q 018525 224 ELHGTVY-----TVVCLDCGFSFCR 243 (354)
Q Consensus 224 ELHGsl~-----~~~C~~C~~~~~~ 243 (354)
-|-||++ .++|++|+..|.|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1024 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRR 1024 (1095)
T ss_pred HhhhhHhhhhccceeecccCCcccc
Confidence 5668886 3689999988743
No 30
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=74.96 E-value=2.4 Score=29.67 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.8
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
..+|.+|+...
T Consensus 3 ~y~C~~CG~~~ 13 (46)
T PRK00398 3 EYKCARCGREV 13 (46)
T ss_pred EEECCCCCCEE
Confidence 57899999765
No 31
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=74.82 E-value=2.1 Score=28.64 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.1
Q ss_pred eeeeCCCCcccch
Q 018525 231 TVVCLDCGFSFCR 243 (354)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (354)
...|.+|+..|..
T Consensus 2 ~i~Cp~C~~~y~i 14 (36)
T PF13717_consen 2 IITCPNCQAKYEI 14 (36)
T ss_pred EEECCCCCCEEeC
Confidence 3689999988753
No 32
>PRK07591 threonine synthase; Validated
Probab=73.91 E-value=2.4 Score=43.33 Aligned_cols=15 Identities=20% Similarity=0.662 Sum_probs=11.4
Q ss_pred ccceeeeCCCCcccc
Q 018525 228 TVYTVVCLDCGFSFC 242 (354)
Q Consensus 228 sl~~~~C~~C~~~~~ 242 (354)
.+..++|..|++.|+
T Consensus 15 ~~~~l~C~~Cg~~~~ 29 (421)
T PRK07591 15 PAVALKCRECGAEYP 29 (421)
T ss_pred ceeEEEeCCCCCcCC
Confidence 344689999998773
No 33
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=72.87 E-value=1.5 Score=36.46 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.2
Q ss_pred eeeCCCCcccc
Q 018525 232 VVCLDCGFSFC 242 (354)
Q Consensus 232 ~~C~~C~~~~~ 242 (354)
.+|++|++.|+
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 48999999874
No 34
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=72.55 E-value=2.7 Score=38.16 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=10.4
Q ss_pred CCCCCCCCeeec
Q 018525 299 PTCQKCNGVLKP 310 (354)
Q Consensus 299 P~Cp~CgG~LrP 310 (354)
..||.||+.|..
T Consensus 137 F~Cp~Cg~~L~~ 148 (178)
T PRK06266 137 FRCPQCGEMLEE 148 (178)
T ss_pred CcCCCCCCCCee
Confidence 589999999866
No 35
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=72.48 E-value=3.4 Score=34.94 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCcEEEEECCccC
Q 018525 112 INQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 112 i~~La~~l~~ak~iVVlTGAGIS 134 (354)
|++++++|.+|++.|+++|.|+.
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~ 23 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGAR 23 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHH
T ss_pred CHHHHHHHHhCCCEEEEEcCCcC
Confidence 56788888999999999998865
No 36
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=72.01 E-value=3.8 Score=36.44 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.0
Q ss_pred ceeeeCCCCcccchh
Q 018525 230 YTVVCLDCGFSFCRD 244 (354)
Q Consensus 230 ~~~~C~~C~~~~~~~ 244 (354)
....|..|+..|+.+
T Consensus 108 ~~Y~Cp~c~~r~tf~ 122 (158)
T TIGR00373 108 MFFICPNMCVRFTFN 122 (158)
T ss_pred CeEECCCCCcEeeHH
Confidence 357899999887643
No 37
>PRK04023 DNA polymerase II large subunit; Validated
Probab=71.34 E-value=4.8 Score=45.41 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=15.2
Q ss_pred Eeecccce-----eeeCCCCcccch
Q 018525 224 ELHGTVYT-----VVCLDCGFSFCR 243 (354)
Q Consensus 224 ELHGsl~~-----~~C~~C~~~~~~ 243 (354)
-|-||++. ++|++|+..|.|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1049 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRR 1049 (1121)
T ss_pred hhhhhhhhhcccceeecccCccccc
Confidence 56688863 689999988743
No 38
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=71.12 E-value=4.8 Score=46.41 Aligned_cols=20 Identities=35% Similarity=0.831 Sum_probs=15.3
Q ss_pred Eeecccce-----eeeCCCCcccch
Q 018525 224 ELHGTVYT-----VVCLDCGFSFCR 243 (354)
Q Consensus 224 ELHGsl~~-----~~C~~C~~~~~~ 243 (354)
-|-||++. ++|++|+..|.|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR 1265 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRR 1265 (1337)
T ss_pred hhhhhhhhhhccceeecccCccccc
Confidence 56688863 689999988743
No 39
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=70.76 E-value=3.5 Score=29.31 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.1
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
+..+|.+|++.+.
T Consensus 4 Yey~C~~Cg~~fe 16 (52)
T TIGR02605 4 YEYRCTACGHRFE 16 (52)
T ss_pred EEEEeCCCCCEeE
Confidence 4578999998763
No 40
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=70.16 E-value=9.2 Score=40.67 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccCccC
Q 018525 110 EDINQLYQFFDNSAKLIVLTGAGISTEC 137 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGISaaS 137 (354)
++|++++++|.+|++.||+.|.|..-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998776
No 41
>PRK14873 primosome assembly protein PriA; Provisional
Probab=69.83 E-value=24 Score=38.53 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=9.2
Q ss_pred CCCCCCCCCe-eec
Q 018525 298 IPTCQKCNGV-LKP 310 (354)
Q Consensus 298 iP~Cp~CgG~-LrP 310 (354)
...||+||+. |++
T Consensus 422 p~~Cp~Cgs~~l~~ 435 (665)
T PRK14873 422 DWRCPRCGSDRLRA 435 (665)
T ss_pred CccCCCCcCCccee
Confidence 3589999985 443
No 42
>PF14353 CpXC: CpXC protein
Probab=69.63 E-value=1.5 Score=37.21 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=10.0
Q ss_pred eeeCCCCcccchh
Q 018525 232 VVCLDCGFSFCRD 244 (354)
Q Consensus 232 ~~C~~C~~~~~~~ 244 (354)
+.|.+|++.+..+
T Consensus 2 itCP~C~~~~~~~ 14 (128)
T PF14353_consen 2 ITCPHCGHEFEFE 14 (128)
T ss_pred cCCCCCCCeeEEE
Confidence 5799999886543
No 43
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=69.59 E-value=1.1 Score=44.52 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=15.6
Q ss_pred EeecccceeeeCCCCcccch
Q 018525 224 ELHGTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 224 ELHGsl~~~~C~~C~~~~~~ 243 (354)
-.-|-++..-|+.|...|..
T Consensus 239 P~LGKY~~TAC~rC~t~y~l 258 (403)
T COG1379 239 PRLGKYHLTACSRCYTRYSL 258 (403)
T ss_pred ccccchhHHHHHHhhhccCc
Confidence 34578888899999988754
No 44
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=69.05 E-value=3.5 Score=42.01 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.4
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
+.++|..|++.|+
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 3679999998874
No 45
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=67.56 E-value=3.6 Score=35.94 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.3
Q ss_pred eeeeCCCCcccch
Q 018525 231 TVVCLDCGFSFCR 243 (354)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (354)
...|..|+..|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 4689999988864
No 46
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=67.53 E-value=4.1 Score=27.37 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.5
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
..+|.+|+..|.
T Consensus 2 ~i~CP~C~~~f~ 13 (37)
T PF13719_consen 2 IITCPNCQTRFR 13 (37)
T ss_pred EEECCCCCceEE
Confidence 368999998874
No 47
>PRK06450 threonine synthase; Validated
Probab=66.86 E-value=4 Score=40.53 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.0
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
.++|..|++.|
T Consensus 3 ~~~C~~Cg~~~ 13 (338)
T PRK06450 3 KEVCMKCGKER 13 (338)
T ss_pred eeEECCcCCcC
Confidence 37899999876
No 48
>PRK05580 primosome assembly protein PriA; Validated
Probab=66.65 E-value=10 Score=41.37 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCCEEEEEccCCc
Q 018525 323 RADKAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 323 ~~~~A~~~~~~aDllLVvGTSL~ 345 (354)
..+...+.+.+-+.=|+|||.+.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh
Confidence 35666777776666677899874
No 49
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=65.60 E-value=4.2 Score=34.40 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=11.5
Q ss_pred EeecccceeeeCCCCccc
Q 018525 224 ELHGTVYTVVCLDCGFSF 241 (354)
Q Consensus 224 ELHGsl~~~~C~~C~~~~ 241 (354)
++.=--....|..|++.+
T Consensus 64 ~Ie~vp~~~~C~~Cg~~~ 81 (117)
T PRK00564 64 DIVDEKVELECKDCSHVF 81 (117)
T ss_pred EEEecCCEEEhhhCCCcc
Confidence 333334467899999654
No 50
>PRK12496 hypothetical protein; Provisional
Probab=65.46 E-value=3.9 Score=36.60 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.4
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
..+|..|+..|+
T Consensus 127 ~~~C~gC~~~~~ 138 (164)
T PRK12496 127 RKVCKGCKKKYP 138 (164)
T ss_pred eEECCCCCcccc
Confidence 357999998774
No 51
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.20 E-value=14 Score=38.90 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcCCEEEEEccCCc
Q 018525 323 RADKAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 323 ~~~~A~~~~~~aDllLVvGTSL~ 345 (354)
.++...+.+.+-+.=|+|||.+.
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc
Confidence 34666777776666777999874
No 52
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.34 E-value=5.5 Score=25.99 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=9.0
Q ss_pred eeeCCCCcccc
Q 018525 232 VVCLDCGFSFC 242 (354)
Q Consensus 232 ~~C~~C~~~~~ 242 (354)
++|..|++.|+
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 68999998763
No 53
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=62.51 E-value=7.9 Score=25.57 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.2
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
.++|..||+.+
T Consensus 2 ~~~C~~CG~i~ 12 (34)
T cd00729 2 VWVCPVCGYIH 12 (34)
T ss_pred eEECCCCCCEe
Confidence 57899999876
No 54
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=62.50 E-value=7.4 Score=27.78 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.6
Q ss_pred eeeeCCCCcccch
Q 018525 231 TVVCLDCGFSFCR 243 (354)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (354)
+.+|..|++.|+-
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 4689999998864
No 55
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=61.89 E-value=9.5 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=15.1
Q ss_pred ceEEeecccceeeeCCCCcccchhh
Q 018525 221 NPLELHGTVYTVVCLDCGFSFCRDL 245 (354)
Q Consensus 221 kviELHGsl~~~~C~~C~~~~~~~~ 245 (354)
-+..++|. .|..|+-..+.+.
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~ 36 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQE 36 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHH
Confidence 46777776 8999997765444
No 56
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=61.42 E-value=9.8 Score=44.23 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=11.8
Q ss_pred CCCCCCCCeeeceE
Q 018525 299 PTCQKCNGVLKPDV 312 (354)
Q Consensus 299 P~Cp~CgG~LrP~V 312 (354)
-+||+|||.+-..|
T Consensus 1558 G~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1558 GKCPKCGSKLILTV 1571 (1627)
T ss_pred CcCcccCCeEEEEE
Confidence 48999999887776
No 57
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.56 E-value=17 Score=40.03 Aligned_cols=18 Identities=33% Similarity=0.790 Sum_probs=12.2
Q ss_pred EEeecccceeeeCCCCcc
Q 018525 223 LELHGTVYTVVCLDCGFS 240 (354)
Q Consensus 223 iELHGsl~~~~C~~C~~~ 240 (354)
+.=-|....+.|-.|++.
T Consensus 427 lnRRGys~~l~C~~Cg~v 444 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYI 444 (730)
T ss_pred EccCCccceeecccCCCc
Confidence 344577777777777765
No 58
>COG1773 Rubredoxin [Energy production and conversion]
Probab=58.69 E-value=13 Score=27.56 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.0
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
..++|..|+..|+
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 4689999999885
No 59
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=57.58 E-value=11 Score=25.40 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q 018525 232 VVCLDCGFSFC 242 (354)
Q Consensus 232 ~~C~~C~~~~~ 242 (354)
..|.+|+..|-
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 57999999874
No 60
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=57.47 E-value=7.3 Score=28.15 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=9.9
Q ss_pred eeeCCCCcccch
Q 018525 232 VVCLDCGFSFCR 243 (354)
Q Consensus 232 ~~C~~C~~~~~~ 243 (354)
.+|..|++.|+-
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 689999998853
No 61
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.08 E-value=5.5 Score=31.41 Aligned_cols=20 Identities=35% Similarity=0.823 Sum_probs=14.1
Q ss_pred CCCCCCCCCee-----eceEEEcCC
Q 018525 298 IPTCQKCNGVL-----KPDVVFFGD 317 (354)
Q Consensus 298 iP~Cp~CgG~L-----rP~VVlFGE 317 (354)
+-.||.||+.| ++.|+|=|.
T Consensus 33 lt~ce~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 33 LTTCEECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred cccChhhChHHHHhhccceEEEecc
Confidence 45799999865 467776554
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.90 E-value=6.2 Score=37.61 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=14.2
Q ss_pred eEEeecccceeeeCCCCcccchhh
Q 018525 222 PLELHGTVYTVVCLDCGFSFCRDL 245 (354)
Q Consensus 222 viELHGsl~~~~C~~C~~~~~~~~ 245 (354)
|+.+.|. .|..|+-..+...
T Consensus 192 vvpl~g~----~C~GC~m~l~~~~ 211 (239)
T COG1579 192 VVPLEGR----VCGGCHMKLPSQT 211 (239)
T ss_pred EEeecCC----cccCCeeeecHHH
Confidence 6777775 5999998765443
No 63
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=54.26 E-value=8.3 Score=32.52 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHHHhhcCCEEEEEccCCch
Q 018525 325 DKAMEAAKECDAFLVLGSSLMT 346 (354)
Q Consensus 325 ~~A~~~~~~aDllLVvGTSL~V 346 (354)
..+.+.+++||++|++||++.-
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSD 90 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSST
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 4567778999999999999843
No 64
>PRK08197 threonine synthase; Validated
Probab=53.84 E-value=8.1 Score=39.04 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.5
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
..++|..|++.|+
T Consensus 6 ~~~~C~~Cg~~~~ 18 (394)
T PRK08197 6 SHLECSKCGETYD 18 (394)
T ss_pred eEEEECCCCCCCC
Confidence 4589999998874
No 65
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=52.67 E-value=9.2 Score=27.64 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.5
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
...|..|+..+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 35799999875
No 66
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=52.57 E-value=7.4 Score=25.51 Aligned_cols=12 Identities=58% Similarity=1.248 Sum_probs=8.3
Q ss_pred CCCCCC-Ceeece
Q 018525 300 TCQKCN-GVLKPD 311 (354)
Q Consensus 300 ~Cp~Cg-G~LrP~ 311 (354)
.||+|| |.|.|-
T Consensus 3 lcpkcgvgvl~pv 15 (36)
T PF09151_consen 3 LCPKCGVGVLEPV 15 (36)
T ss_dssp B-TTTSSSBEEEE
T ss_pred cCCccCceEEEEe
Confidence 599998 677764
No 67
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=52.34 E-value=6.3 Score=23.83 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=4.3
Q ss_pred CCCCCCCe
Q 018525 300 TCQKCNGV 307 (354)
Q Consensus 300 ~Cp~CgG~ 307 (354)
.|+.||..
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 46666543
No 68
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=51.76 E-value=10 Score=31.84 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=9.1
Q ss_pred ceeeeCCCCccc
Q 018525 230 YTVVCLDCGFSF 241 (354)
Q Consensus 230 ~~~~C~~C~~~~ 241 (354)
...+|.+|++.+
T Consensus 69 ~~~~C~~Cg~~~ 80 (114)
T PRK03681 69 AECWCETCQQYV 80 (114)
T ss_pred cEEEcccCCCee
Confidence 357899999755
No 69
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=51.14 E-value=9.7 Score=32.96 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.2
Q ss_pred ceeeeCCCCcccch
Q 018525 230 YTVVCLDCGFSFCR 243 (354)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (354)
..+.|.+|++.+..
T Consensus 69 ~~~~C~~CG~~~~~ 82 (135)
T PRK03824 69 AVLKCRNCGNEWSL 82 (135)
T ss_pred eEEECCCCCCEEec
Confidence 46899999988754
No 70
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=50.25 E-value=9.8 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=12.2
Q ss_pred EEeecccceeeeCCCCccc
Q 018525 223 LELHGTVYTVVCLDCGFSF 241 (354)
Q Consensus 223 iELHGsl~~~~C~~C~~~~ 241 (354)
++++=--...+|.+|++.+
T Consensus 62 L~I~~vp~~~~C~~Cg~~~ 80 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVV 80 (113)
T ss_pred EEEEeeCcEEEcccCCCEE
Confidence 3333344467899999765
No 71
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=49.93 E-value=13 Score=33.99 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=9.9
Q ss_pred CCCCCCCeeeceE
Q 018525 300 TCQKCNGVLKPDV 312 (354)
Q Consensus 300 ~Cp~CgG~LrP~V 312 (354)
.||.||+.++=..
T Consensus 155 ~Cp~CG~~~~~~~ 167 (177)
T COG1439 155 FCPICGSPLKRKR 167 (177)
T ss_pred cCCCCCCceEEee
Confidence 6999999866443
No 72
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.24 E-value=11 Score=31.61 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.7
Q ss_pred CCCCCCCCeeece
Q 018525 299 PTCQKCNGVLKPD 311 (354)
Q Consensus 299 P~Cp~CgG~LrP~ 311 (354)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 4599999987777
No 73
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.91 E-value=18 Score=29.96 Aligned_cols=52 Identities=23% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEe--ecccceeeeCCCCcccchh
Q 018525 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCRD 244 (354)
Q Consensus 185 a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviEL--HGsl~~~~C~~C~~~~~~~ 244 (354)
......|+.|..|++.|.+..+.+.|-- ..+++ +..-..+.|..|++..+.+
T Consensus 40 is~~TVYR~L~~L~e~Gli~~~~~~~~~--------~~Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 40 ISLATVYRTLDLLEEAGLIRKIEFGDGE--------SRYELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTSE--------EEEEESSSSSCEEEEETTTS-EEEE-
T ss_pred cCHHHHHHHHHHHHHCCeEEEEEcCCCc--------ceEeecCCCcceEEEECCCCCEEEec
Confidence 3445789999999999988776544222 23444 3444568999999986543
No 74
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=48.58 E-value=8 Score=32.37 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=12.7
Q ss_pred EEeecccceeeeCCCCcccch
Q 018525 223 LELHGTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 223 iELHGsl~~~~C~~C~~~~~~ 243 (354)
++++=--...+|..|++.|..
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~ 82 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEP 82 (113)
T ss_dssp EEEEEE--EEEETTTS-EEEC
T ss_pred EEEEecCCcEECCCCCCEEec
Confidence 444444557899999988753
No 75
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=48.48 E-value=11 Score=31.71 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=9.6
Q ss_pred ceeeeCCCCcccc
Q 018525 230 YTVVCLDCGFSFC 242 (354)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (354)
....|.+|++.+.
T Consensus 69 ~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 69 VECECEDCSEEVS 81 (115)
T ss_pred cEEEcccCCCEEe
Confidence 3578999997653
No 76
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=47.58 E-value=16 Score=25.57 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=7.9
Q ss_pred CCCCCCCCCe
Q 018525 298 IPTCQKCNGV 307 (354)
Q Consensus 298 iP~Cp~CgG~ 307 (354)
.-+||.||..
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 3589999974
No 77
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=43.80 E-value=16 Score=31.57 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.4
Q ss_pred CCCCCCCCCeeece
Q 018525 298 IPTCQKCNGVLKPD 311 (354)
Q Consensus 298 iP~Cp~CgG~LrP~ 311 (354)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 46799999876555
No 78
>PRK05638 threonine synthase; Validated
Probab=43.71 E-value=15 Score=37.82 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.5
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
+++|..|++.|+
T Consensus 1 ~l~C~~Cg~~~~ 12 (442)
T PRK05638 1 KMKCPKCGREYN 12 (442)
T ss_pred CeEeCCCCCCCC
Confidence 368999998774
No 79
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=16 Score=37.81 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=9.2
Q ss_pred ceeeeCCCCccc
Q 018525 230 YTVVCLDCGFSF 241 (354)
Q Consensus 230 ~~~~C~~C~~~~ 241 (354)
....|..|++.+
T Consensus 6 t~f~C~~CG~~s 17 (456)
T COG1066 6 TAFVCQECGYVS 17 (456)
T ss_pred cEEEcccCCCCC
Confidence 357899999765
No 80
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=42.45 E-value=14 Score=24.46 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=7.4
Q ss_pred cccceeeeCCCCcc
Q 018525 227 GTVYTVVCLDCGFS 240 (354)
Q Consensus 227 Gsl~~~~C~~C~~~ 240 (354)
|.+...+|.+|+..
T Consensus 7 ~~l~~~rC~~Cg~~ 20 (37)
T PF12172_consen 7 GRLLGQRCRDCGRV 20 (37)
T ss_dssp T-EEEEE-TTT--E
T ss_pred CEEEEEEcCCCCCE
Confidence 55666789999865
No 81
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=42.12 E-value=30 Score=36.64 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.++.+++++++++|.+|++.||+.|.|+.
T Consensus 184 ~~~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 184 APDVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 35678999999999999999999999996
No 82
>PLN02569 threonine synthase
Probab=41.87 E-value=15 Score=38.43 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=10.0
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
.++|..|++.|+
T Consensus 49 ~l~C~~Cg~~y~ 60 (484)
T PLN02569 49 FLECPLTGEKYS 60 (484)
T ss_pred ccEeCCCCCcCC
Confidence 489999998874
No 83
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=41.25 E-value=34 Score=36.45 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 4678899999999999999999999985
No 84
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=40.90 E-value=34 Score=36.32 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+++++++++|.+|++.||+.|.|+-
T Consensus 201 ~~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 201 KPTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 35667899999999999999999999994
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=40.78 E-value=38 Score=33.40 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=33.1
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCCCCCC
Q 018525 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS 150 (354)
Q Consensus 98 ~~~~p~s~~~~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~Gl~~ 150 (354)
++.||+..|-..-.++.++. |-++.++||..|.| |||..+..+| |.
T Consensus 160 RRVVpSP~P~~IvE~~~Ik~-L~~~g~vVI~~GGG-----GIPVv~~~~~-~~ 205 (312)
T COG0549 160 RRVVPSPKPVRIVEAEAIKA-LLESGHVVIAAGGG-----GIPVVEEGAG-LQ 205 (312)
T ss_pred eEecCCCCCccchhHHHHHH-HHhCCCEEEEeCCC-----CcceEecCCC-cc
Confidence 46677777655444544444 45668899999998 9999998887 54
No 86
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=40.10 E-value=18 Score=41.36 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCCeeec
Q 018525 295 DFHIPTCQKCNGVLKP 310 (354)
Q Consensus 295 ~~~iP~Cp~CgG~LrP 310 (354)
.+.+-.||.|||.+.+
T Consensus 835 ~~~~~~~~~~~~~~~~ 850 (1006)
T PRK12775 835 AFPYGMCPACGGKLQA 850 (1006)
T ss_pred cCCcCcCcccccchhh
Confidence 3445689999997654
No 87
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=39.92 E-value=27 Score=39.93 Aligned_cols=36 Identities=28% Similarity=0.566 Sum_probs=22.7
Q ss_pred CCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhcCCEEEEEccC
Q 018525 299 PTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSS 343 (354)
Q Consensus 299 P~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~aDllLVvGTS 343 (354)
..||.||+. +|. + -.+..+...+.+.++|-++ |||-
T Consensus 709 ~~cP~Cgs~---~v~---d--~~~~ve~lRelA~EvDeVl-IgTD 744 (1187)
T COG1110 709 DKCPRCGSR---NVE---D--KTETVEALRELALEVDEIL-IGTD 744 (1187)
T ss_pred ccCCCCCCc---ccc---c--cHHHHHHHHHHHhhcCEEE-EcCC
Confidence 489999974 221 1 1234666667777899865 5664
No 88
>PRK07524 hypothetical protein; Provisional
Probab=39.20 E-value=36 Score=35.62 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 4567899999999999999999999985
No 89
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=39.09 E-value=31 Score=36.27 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||..
T Consensus 77 ~~N~~~gia~A~~~~~Pvl~I~G~~ 101 (554)
T TIGR03254 77 FLNGLTALANATTNCFPMIMISGSS 101 (554)
T ss_pred HHhHHHHHHHHHhcCCCEEEEEccC
Confidence 3467788888888888899999964
No 90
>PRK07586 hypothetical protein; Validated
Probab=38.84 E-value=36 Score=35.35 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
.+..+++++++++|.+|++.||+.|.|+..
T Consensus 181 ~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 181 AVDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 356688999999999999999999999863
No 91
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=38.68 E-value=36 Score=35.95 Aligned_cols=29 Identities=14% Similarity=0.466 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+.+++++++|.+|++.||+.|.|+-
T Consensus 197 ~~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 197 LPAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 34568899999999999999999999985
No 92
>PRK06154 hypothetical protein; Provisional
Probab=38.40 E-value=39 Score=35.82 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
.+..+++++++++|.+|++.||+.|.|+..+
T Consensus 198 ~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 198 GADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3456789999999999999999999999743
No 93
>PRK05858 hypothetical protein; Provisional
Probab=38.37 E-value=32 Score=36.13 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred cCCCCCHHHHHHHHHHhhcCCEEEEEccCCch
Q 018525 315 FGDNVPKDRADKAMEAAKECDAFLVLGSSLMT 346 (354)
Q Consensus 315 FGE~lp~~~~~~A~~~~~~aDllLVvGTSL~V 346 (354)
|.|..|...-..+.+.+++||++|+|||++..
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~ 275 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDF 275 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcc
Confidence 55555544334566778899999999998754
No 94
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.11 E-value=18 Score=37.35 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=7.8
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
..+|.+||+..
T Consensus 7 ~y~C~~Cg~~~ 17 (446)
T PRK11823 7 AYVCQECGAES 17 (446)
T ss_pred eEECCcCCCCC
Confidence 46788888754
No 95
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.67 E-value=55 Score=28.24 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018525 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..|- ...+++. +.-..++|..|+...+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~--------~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGG--------KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCC--------cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 4567889999999999999876654441 1223331 11234899999988654
No 96
>PF13289 SIR2_2: SIR2-like domain
Probab=37.30 E-value=16 Score=30.36 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.8
Q ss_pred eeeecCCcchhhhh
Q 018525 205 CMITQNVDRLHHRA 218 (354)
Q Consensus 205 ~VITQNIDgLh~rA 218 (354)
.|||+|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 68999999999887
No 97
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=36.84 E-value=44 Score=35.01 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 45568999999999999999999999854
No 98
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=36.56 E-value=45 Score=35.57 Aligned_cols=29 Identities=10% Similarity=0.425 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+++++++++|.+|++.||++|.|+..
T Consensus 187 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 187 ATRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 35678999999999999999999999874
No 99
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.34 E-value=43 Score=27.23 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=35.1
Q ss_pred cCCCCHHHHHHHHHHHcCCCceeeecCCcchhhhhCCceEEee--cccceeeeCCCCcccch
Q 018525 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (354)
Q Consensus 184 ~a~Pn~~H~aLa~L~~~G~l~~VITQNIDgLh~rAG~kviELH--Gsl~~~~C~~C~~~~~~ 243 (354)
...+...|+.|..|++.|.+..+-..|- ...+++. ..-..++|.+||+..+.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~--------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDG--------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCC--------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 4567889999999999999877644431 1223321 22235899999988654
No 100
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.30 E-value=44 Score=35.65 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+.+++++++|.+|++.||+.|.|+.
T Consensus 196 ~~~~~~l~~a~~~L~~A~rPvil~G~g~~ 224 (595)
T PRK09107 196 KGDAEAITEAVELLANAKRPVIYSGGGVI 224 (595)
T ss_pred CCCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 34567899999999999999999999985
No 101
>PRK08329 threonine synthase; Validated
Probab=36.01 E-value=20 Score=35.65 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=9.0
Q ss_pred eeeCCCCcccc
Q 018525 232 VVCLDCGFSFC 242 (354)
Q Consensus 232 ~~C~~C~~~~~ 242 (354)
++|..|++.|+
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 58999998774
No 102
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=35.94 E-value=16 Score=36.92 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=6.5
Q ss_pred eeCCCCccc
Q 018525 233 VCLDCGFSF 241 (354)
Q Consensus 233 ~C~~C~~~~ 241 (354)
+|.+|++..
T Consensus 2 ~c~~cg~~~ 10 (372)
T cd01121 2 VCSECGYVS 10 (372)
T ss_pred CCCCCCCCC
Confidence 588888764
No 103
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=35.91 E-value=17 Score=33.07 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=8.7
Q ss_pred CCCCCCCCeee
Q 018525 299 PTCQKCNGVLK 309 (354)
Q Consensus 299 P~Cp~CgG~Lr 309 (354)
-.||.||+.|.
T Consensus 133 F~Cp~Cg~~L~ 143 (176)
T COG1675 133 FTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCchhh
Confidence 47999998763
No 104
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=35.65 E-value=39 Score=35.55 Aligned_cols=115 Identities=10% Similarity=0.207 Sum_probs=77.2
Q ss_pred ccccccccccc--------cc-cceeecchHHHHHhhhcccceeecCCc--cceeeeee----eecCCCCCC-CCCCCCC
Q 018525 25 SASRNSSGMLA--------RV-KSEIVQSSIKAQQLLSKGRRVFPHQGS--VKFVQTSW----RMSIPGLPS-SRHEDKA 88 (354)
Q Consensus 25 ~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~-~~~~~~~ 88 (354)
-++|.--+||- ++ +.|-+.|-|.-|+-+++-..+++..-+ .-|+.|+- .|.+|..-- -.-++
T Consensus 120 fA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dy-- 197 (617)
T COG3962 120 FATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDY-- 197 (617)
T ss_pred hcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhhhhhcCC--
Confidence 47888888873 33 347789999999999999998876322 23333322 334442200 01112
Q ss_pred CCCcccccCCcccCCCCCCCHHHHHHHHHHHHcCCcEEEEECCcc------------CccCCCCCcC
Q 018525 89 PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGI------------STECGIPDYR 143 (354)
Q Consensus 89 ~~~~~~~~~~~~~p~s~~~~~~~i~~La~~l~~ak~iVVlTGAGI------------SaaSGIPDFR 143 (354)
| -+++-++.....-.+|+...++.++++|+++++-||+.|.|. +-..|||--.
T Consensus 198 p--~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~E 262 (617)
T COG3962 198 P--ESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVE 262 (617)
T ss_pred c--HHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEe
Confidence 1 335666666777788889999999999999999999999996 3445787544
No 105
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=35.27 E-value=19 Score=27.70 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.2
Q ss_pred EeecccceeeeCCCCcc
Q 018525 224 ELHGTVYTVVCLDCGFS 240 (354)
Q Consensus 224 ELHGsl~~~~C~~C~~~ 240 (354)
+.+|.+-++.|..|+++
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78899999999999976
No 106
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=35.17 E-value=40 Score=36.04 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+++++++++|.+|++.||+.|.|..
T Consensus 208 ~~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 208 KGNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 35678999999999999999999999985
No 107
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=35.16 E-value=44 Score=29.63 Aligned_cols=20 Identities=20% Similarity=0.566 Sum_probs=15.2
Q ss_pred CCCCCCCCC------eeeceEEEcCC
Q 018525 298 IPTCQKCNG------VLKPDVVFFGD 317 (354)
Q Consensus 298 iP~Cp~CgG------~LrP~VVlFGE 317 (354)
.-.||.||. +|-|+|.-=+.
T Consensus 32 lv~CP~Cgs~~V~K~lmAP~v~~~~~ 57 (148)
T PF06676_consen 32 LVSCPVCGSTEVSKALMAPAVATSRS 57 (148)
T ss_pred CccCCCCCCCeEeeecCCCeecCCCC
Confidence 457999985 78888877554
No 108
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=35.09 E-value=49 Score=34.59 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+++++++++|.+|++.||+.|.|..
T Consensus 190 ~~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 190 RPDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 34567899999999999999999999985
No 109
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=34.80 E-value=44 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 216 p~~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 216 PHGKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 45678999999999999999999999943
No 110
>PRK07064 hypothetical protein; Provisional
Probab=34.73 E-value=45 Score=34.84 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+.+++++++|.+|++.||+.|.|+.
T Consensus 187 ~~~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 187 EPDAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 34567899999999999999999999984
No 111
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.55 E-value=24 Score=34.36 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=12.8
Q ss_pred CCCCCCCCC--eeeceEEEcC
Q 018525 298 IPTCQKCNG--VLKPDVVFFG 316 (354)
Q Consensus 298 iP~Cp~CgG--~LrP~VVlFG 316 (354)
.+.||.||+ .++|-.-+-|
T Consensus 368 ~~~c~~c~~~~~~~~~~~~~~ 388 (389)
T PRK11788 368 YWHCPSCKAWETIKPIRGLDG 388 (389)
T ss_pred eeECcCCCCccCcCCcccCCC
Confidence 589999996 4666544433
No 112
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=34.28 E-value=21 Score=37.03 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=8.2
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
..+|.+|++..
T Consensus 7 ~y~C~~Cg~~~ 17 (454)
T TIGR00416 7 KFVCQHCGADS 17 (454)
T ss_pred eEECCcCCCCC
Confidence 46799998764
No 113
>PRK08617 acetolactate synthase; Reviewed
Probab=34.28 E-value=48 Score=34.81 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3467899999999999999999999975
No 114
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=34.11 E-value=18 Score=36.66 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=12.4
Q ss_pred ecccceeeeCCCCccc
Q 018525 226 HGTVYTVVCLDCGFSF 241 (354)
Q Consensus 226 HGsl~~~~C~~C~~~~ 241 (354)
-|-++.--|.+|+..+
T Consensus 235 ~GKYh~~~c~~C~~~~ 250 (374)
T TIGR00375 235 LGKYHQTACEACGEPA 250 (374)
T ss_pred CCccchhhhcccCCcC
Confidence 4778888899998654
No 115
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=33.54 E-value=27 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=16.7
Q ss_pred CCCCCCCCCeeeceEEEcCCC
Q 018525 298 IPTCQKCNGVLKPDVVFFGDN 318 (354)
Q Consensus 298 iP~Cp~CgG~LrP~VVlFGE~ 318 (354)
.-.||.||..|.|..+.=+..
T Consensus 47 ~~~cP~Cge~~~~a~vva~ta 67 (102)
T PF04475_consen 47 DTICPKCGEELDSAFVVADTA 67 (102)
T ss_pred cccCCCCCCccCceEEEeccc
Confidence 357999999999988865553
No 116
>PRK07586 hypothetical protein; Validated
Probab=33.54 E-value=39 Score=35.12 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
.+.+.-+++...+.--+|+++|..
T Consensus 77 ~N~~~gl~~A~~~~~Pvl~i~G~~ 100 (514)
T PRK07586 77 ANGLANLHNARRARTPIVNIVGDH 100 (514)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCC
Confidence 466777777788888899999863
No 117
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=33.51 E-value=47 Score=35.17 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+++++++++|.+|++.||+.|.|...
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 45788999999999999999999999964
No 118
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=33.49 E-value=31 Score=36.01 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.2
Q ss_pred EEeecccceeeeCCCCcccc
Q 018525 223 LELHGTVYTVVCLDCGFSFC 242 (354)
Q Consensus 223 iELHGsl~~~~C~~C~~~~~ 242 (354)
..--+....++|..|++.|+
T Consensus 417 ~~~~~~~~~~~c~~c~~~yd 436 (479)
T PRK05452 417 TTTADLGPRMQCSVCQWIYD 436 (479)
T ss_pred ccccCCCCeEEECCCCeEEC
Confidence 34445667889999999885
No 119
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=33.35 E-value=51 Score=34.88 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+...++++++++|.+|++.||+.|.|+.
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4567899999999999999999999974
No 120
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=33.28 E-value=47 Score=33.82 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc-----------cCCCCCcCCC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST-----------ECGIPDYRSP 145 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa-----------aSGIPDFRg~ 145 (354)
+..+.+++++++|.+|++.||+.|.|... ..|+|.+-+.
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 45678999999999999999999999853 3467766443
No 121
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=33.19 E-value=45 Score=30.18 Aligned_cols=23 Identities=4% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCcEEEEECCccCc
Q 018525 113 NQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 113 ~~La~~l~~ak~iVVlTGAGISa 135 (354)
+.++++|++|++.|++.|.|+..
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccc
Confidence 57788899999999999999975
No 122
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.16 E-value=47 Score=35.13 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
+..+.+++++++|.+|++.||+.|.|+..+
T Consensus 191 ~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 191 GHKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 356789999999999999999999999644
No 123
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.14 E-value=45 Score=35.46 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
..+.+++++++|.+|++.||+.|.|+..
T Consensus 207 ~~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 207 HSGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 5678999999999999999999999963
No 124
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=33.08 E-value=20 Score=23.82 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.7
Q ss_pred CCCCCCCeeeceE
Q 018525 300 TCQKCNGVLKPDV 312 (354)
Q Consensus 300 ~Cp~CgG~LrP~V 312 (354)
-||.||..|.|.-
T Consensus 3 FCp~C~nlL~p~~ 15 (35)
T PF02150_consen 3 FCPECGNLLYPKE 15 (35)
T ss_dssp BETTTTSBEEEEE
T ss_pred eCCCCCccceEcC
Confidence 5999999998753
No 125
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=32.98 E-value=54 Score=34.74 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+.+++++++|.+|++.||++|.|...
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 35678999999999999999999999863
No 126
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=32.85 E-value=24 Score=23.96 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=9.8
Q ss_pred CCCCCCCeeeceE
Q 018525 300 TCQKCNGVLKPDV 312 (354)
Q Consensus 300 ~Cp~CgG~LrP~V 312 (354)
.||.||+.|.---
T Consensus 3 ~CP~Cg~~lv~r~ 15 (39)
T PF01396_consen 3 KCPKCGGPLVLRR 15 (39)
T ss_pred CCCCCCceeEEEE
Confidence 6999998775443
No 127
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.83 E-value=14 Score=33.04 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCCceeeecCCcchhh
Q 018525 192 FALASLEKAGRIDCMITQNVDRLHH 216 (354)
Q Consensus 192 ~aLa~L~~~G~l~~VITQNIDgLh~ 216 (354)
+..++..-.| +++|.++|.-++
T Consensus 4 y~~aqiC~NG---H~~t~~~~~~p~ 25 (158)
T PF10083_consen 4 YRIAQICLNG---HVITDSYDKNPE 25 (158)
T ss_pred hhHHHHccCc---cccccccccCch
Confidence 3345555444 468888886643
No 128
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.72 E-value=41 Score=22.07 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=6.7
Q ss_pred CCCCCCCCe
Q 018525 299 PTCQKCNGV 307 (354)
Q Consensus 299 P~Cp~CgG~ 307 (354)
-+|+.||..
T Consensus 18 irC~~CG~R 26 (32)
T PF03604_consen 18 IRCPECGHR 26 (32)
T ss_dssp SSBSSSS-S
T ss_pred EECCcCCCe
Confidence 589999974
No 129
>PRK12474 hypothetical protein; Provisional
Probab=32.58 E-value=55 Score=34.17 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4567899999999999999999999985
No 130
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=32.38 E-value=21 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.776 Sum_probs=6.6
Q ss_pred CCCCCCCeeeceEE
Q 018525 300 TCQKCNGVLKPDVV 313 (354)
Q Consensus 300 ~Cp~CgG~LrP~VV 313 (354)
.||.||+.|.-.|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999887765
No 131
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=32.27 E-value=39 Score=35.22 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.5
Q ss_pred ceEEEcCCCCCHHH---HHHHHHHhhcCCEEEEEccCCchhcccc
Q 018525 310 PDVVFFGDNVPKDR---ADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 310 P~VVlFGE~lp~~~---~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
-||++=.-.+|-+. +++...+..++|+.||+|-.-.|-||++
T Consensus 355 MNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~ 399 (462)
T PRK09444 355 MNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQ 399 (462)
T ss_pred ceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccc
Confidence 48999888899874 4556677889999999999999999986
No 132
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=32.25 E-value=36 Score=36.29 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||.-
T Consensus 79 ~~n~~~gi~~A~~d~vPvl~I~G~~ 103 (597)
T PRK08273 79 AIHLLNGLYDAKLDHVPVVAIVGQQ 103 (597)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3467778888888888899999853
No 133
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.90 E-value=37 Score=35.91 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+.+.-+++...+.--+|+++|..=+
T Consensus 80 ~n~l~gi~~A~~~~~Pvl~i~G~~~~ 105 (574)
T PRK07979 80 TNAITGIATAYMDSIPLVVLSGQVAT 105 (574)
T ss_pred hhhHHHHHHHhhcCCCEEEEECCCCh
Confidence 46677778878888889999986443
No 134
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=31.89 E-value=46 Score=31.70 Aligned_cols=28 Identities=25% Similarity=0.714 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcC-CcEEEEECCccCcc
Q 018525 109 IEDINQLYQFFDNS-AKLIVLTGAGISTE 136 (354)
Q Consensus 109 ~~~i~~La~~l~~a-k~iVVlTGAGISaa 136 (354)
.+.+..|++++..| .+|+|+.|||+..+
T Consensus 155 ~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 155 LEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred hhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 46788999999877 89999999999865
No 135
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.80 E-value=38 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCcEEEEECCccCccCC
Q 018525 111 DINQLYQFFDNSAKLIVLTGAGISTECG 138 (354)
Q Consensus 111 ~i~~La~~l~~ak~iVVlTGAGISaaSG 138 (354)
.++++++.|.++++ |+++|.|.|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 57889999999976 6788999876654
No 136
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.68 E-value=55 Score=34.74 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+++++++++|.+|++.||+.|.|+..
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 45678999999999999999999999953
No 137
>PRK08322 acetolactate synthase; Reviewed
Probab=31.56 E-value=59 Score=34.01 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3467899999999999999999999984
No 138
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.51 E-value=21 Score=28.89 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.3
Q ss_pred cCCcEEEEECCccCcc
Q 018525 121 NSAKLIVLTGAGISTE 136 (354)
Q Consensus 121 ~ak~iVVlTGAGISaa 136 (354)
+.++|+++.|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 4578999999999954
No 139
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=31.35 E-value=36 Score=35.68 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
..+.+.-+++...+.--+|+++|.
T Consensus 75 ~~n~~~gla~A~~d~~Pvl~I~G~ 98 (539)
T TIGR03393 75 ELSAINGIAGSYAEHLPVIHIVGA 98 (539)
T ss_pred HHHHhhHHHHHhhccCCEEEEECC
Confidence 346777888888888889999984
No 140
>PLN02470 acetolactate synthase
Probab=31.31 E-value=56 Score=34.67 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 4567899999999999999999999985
No 141
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=31.31 E-value=53 Score=34.73 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+....+++++++|.+|++.||+.|.|+..
T Consensus 195 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 195 PNDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 34678999999999999999999999953
No 142
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=31.31 E-value=38 Score=35.64 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEECC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGA 131 (354)
.+.+.-+++...+.--+|+++|.
T Consensus 76 ~n~~~gia~A~~~~~Pvl~i~g~ 98 (535)
T TIGR03394 76 FNMVNAIAGAYAEKSPVVVISGA 98 (535)
T ss_pred HhhhhHHHHHhhcCCCEEEEECC
Confidence 46677788888888889999985
No 143
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=31.28 E-value=57 Score=34.33 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4568899999999999999999999986
No 144
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.25 E-value=27 Score=33.82 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=13.1
Q ss_pred eEEeecc----cceeeeCCCCcccch
Q 018525 222 PLELHGT----VYTVVCLDCGFSFCR 243 (354)
Q Consensus 222 viELHGs----l~~~~C~~C~~~~~~ 243 (354)
+..|+|. .++++|+-|++.|..
T Consensus 184 ~s~l~~~~~~G~R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 184 LSVLRGGEREGKRYLHCSLCGTEWRF 209 (290)
T ss_dssp EEEEE------EEEEEETTT--EEE-
T ss_pred eEEEecCCCCccEEEEcCCCCCeeee
Confidence 4566665 489999999988743
No 145
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=31.22 E-value=65 Score=33.98 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|+-
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4567899999999999999999999995
No 146
>PRK11269 glyoxylate carboligase; Provisional
Probab=31.20 E-value=60 Score=34.53 Aligned_cols=28 Identities=11% Similarity=0.447 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 188 ATRAQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4567899999999999999999999985
No 147
>PRK06154 hypothetical protein; Provisional
Probab=31.19 E-value=39 Score=35.85 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
.+.+.-+++...+.--+|+++|..
T Consensus 94 ~N~~~gla~A~~~~~Pvl~i~G~~ 117 (565)
T PRK06154 94 ENAFGGVAQAYGDSVPVLFLPTGY 117 (565)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCC
Confidence 467888888888888899999853
No 148
>PRK07524 hypothetical protein; Provisional
Probab=31.08 E-value=38 Score=35.38 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
..+.+.-+++...+.-=+|++||.
T Consensus 76 ~~n~~~gi~~A~~~~~Pvl~i~G~ 99 (535)
T PRK07524 76 MTNIATAMGQAYADSIPMLVISSV 99 (535)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 346777888888888889999985
No 149
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=31.08 E-value=50 Score=34.92 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||..
T Consensus 84 ~~N~l~gl~~A~~~~~Pvl~I~G~~ 108 (569)
T PRK09259 84 FLNGLTALANATTNCFPMIMISGSS 108 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccC
Confidence 3467788888888888899999863
No 150
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=31.07 E-value=59 Score=34.25 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999985
No 151
>PRK03922 hypothetical protein; Provisional
Probab=31.06 E-value=30 Score=29.13 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=16.0
Q ss_pred CCCCCCCCCeeeceEEEcCC
Q 018525 298 IPTCQKCNGVLKPDVVFFGD 317 (354)
Q Consensus 298 iP~Cp~CgG~LrP~VVlFGE 317 (354)
.-.||.||..+.|..+.=++
T Consensus 49 ~~~cP~cge~~~~afvvA~t 68 (113)
T PRK03922 49 LTICPKCGEPFDSAFVVADT 68 (113)
T ss_pred cccCCCCCCcCCcEEEEecc
Confidence 35799999999998876554
No 152
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=31.04 E-value=57 Score=34.20 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4567899999999999999999999985
No 153
>PRK05858 hypothetical protein; Provisional
Probab=30.91 E-value=64 Score=33.85 Aligned_cols=29 Identities=7% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+..+.+++++++|.+|++.||+.|.|..
T Consensus 187 ~~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 187 TPDPDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred CCCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 35567899999999999999999999985
No 154
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=30.88 E-value=39 Score=35.90 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=16.8
Q ss_pred HHHHHhhcCCEEEEEccCCc
Q 018525 326 KAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~ 345 (354)
.+.+.+++||++|+|||+|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~ 278 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLN 278 (588)
T ss_pred HHHHHHHhCCEEEEECCCCc
Confidence 45677889999999999885
No 155
>PLN02470 acetolactate synthase
Probab=30.82 E-value=39 Score=35.88 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||..
T Consensus 88 ~~N~l~gia~A~~~~~Pvl~I~G~~ 112 (585)
T PLN02470 88 ATNLVTGLADALLDSVPLVAITGQV 112 (585)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCC
Confidence 3467788888888888899999864
No 156
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=30.53 E-value=39 Score=36.12 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.9
Q ss_pred HHHHHhhcCCEEEEEccCCc
Q 018525 326 KAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~ 345 (354)
.+.+.+++||++|+|||++.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~ 302 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFD 302 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCC
Confidence 45667889999999999975
No 157
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.32 E-value=40 Score=35.77 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCcc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGI 133 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGI 133 (354)
..+.+..+++...+.-=+|+++|..=
T Consensus 89 ~~N~~~gla~A~~~~~Pvl~I~G~~~ 114 (570)
T PRK06725 89 ATNLVTGLADAYMDSIPLVVITGQVA 114 (570)
T ss_pred HHHHHHHHHHHhhcCcCEEEEecCCC
Confidence 34677788888888888899988643
No 158
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=30.26 E-value=34 Score=29.13 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=8.1
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
..+| +|++.+.
T Consensus 70 ~~~C-~Cg~~~~ 80 (124)
T PRK00762 70 EIEC-ECGYEGV 80 (124)
T ss_pred eEEe-eCcCccc
Confidence 5689 9997653
No 159
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=30.09 E-value=53 Score=29.64 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.8
Q ss_pred CcccCCCCCCCHH-HHHHHHHHHHcCCcEEEEECCccCccCCCCC
Q 018525 98 KKAVPDADPPSIE-DINQLYQFFDNSAKLIVLTGAGISTECGIPD 141 (354)
Q Consensus 98 ~~~~p~s~~~~~~-~i~~La~~l~~ak~iVVlTGAGISaaSGIPD 141 (354)
+.|+.+..-...+ --++|++.++.++.++|+.|+- -|||.
T Consensus 95 ~lIvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP~ 135 (173)
T PF14419_consen 95 PLIVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSR----EGIPR 135 (173)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc----cCCCh
Confidence 4556555544444 4578999999999999999986 57873
No 160
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.94 E-value=33 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=7.1
Q ss_pred CCCCCCCCe
Q 018525 299 PTCQKCNGV 307 (354)
Q Consensus 299 P~Cp~CgG~ 307 (354)
-.||+||-.
T Consensus 15 ~~Cp~CG~~ 23 (26)
T PF10571_consen 15 KFCPHCGYD 23 (26)
T ss_pred CcCCCCCCC
Confidence 479999964
No 161
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.74 E-value=42 Score=35.54 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCEEEEEccCCchh
Q 018525 325 DKAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 325 ~~A~~~~~~aDllLVvGTSL~V~ 347 (354)
..+.+.+++||++|+|||++..+
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~ 286 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDR 286 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCcc
Confidence 34666778999999999998544
No 162
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.74 E-value=55 Score=34.67 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
..+++++++++|.+|++.||+.|.|..
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999985
No 163
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=29.72 E-value=42 Score=35.52 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHhhcCCEEEEEccCCc
Q 018525 326 KAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~ 345 (354)
.+.+.+++||++|+|||+|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~ 288 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFD 288 (566)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 45667889999999999985
No 164
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=29.69 E-value=62 Score=34.12 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 196 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 196 FDEESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 44578999999999999999999999963
No 165
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=29.60 E-value=42 Score=35.27 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECC
Q 018525 105 DPPSIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 105 ~~~~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
.+-..+.+..+++...+.--+|++||.
T Consensus 73 GPG~~N~l~~l~~A~~~~~Pvl~i~G~ 99 (549)
T PRK06457 73 GPGSIHLLNGLYDAKMDHAPVIALTGQ 99 (549)
T ss_pred CCchhhhHHHHHHHHhcCCCEEEEecC
Confidence 333456788888888888899999995
No 166
>PRK08322 acetolactate synthase; Reviewed
Probab=29.58 E-value=46 Score=34.84 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCcEEEEECC
Q 018525 104 ADPPSIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 104 s~~~~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
+.+-..+.+..+++...+.--+|++||.
T Consensus 71 ~GpG~~N~~~~i~~A~~~~~Pll~i~g~ 98 (547)
T PRK08322 71 LGPGATNLVTGVAYAQLGGMPMVAITGQ 98 (547)
T ss_pred CCccHhHHHHHHHHHhhcCCCEEEEecc
Confidence 3444456778888888888889999985
No 167
>PRK08611 pyruvate oxidase; Provisional
Probab=29.56 E-value=66 Score=34.13 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+++++++++|.+|++.||+.|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 188 PKPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4567899999999999999999999985
No 168
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=29.45 E-value=37 Score=29.54 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=12.0
Q ss_pred cccceeeeCCCCccc
Q 018525 227 GTVYTVVCLDCGFSF 241 (354)
Q Consensus 227 Gsl~~~~C~~C~~~~ 241 (354)
|.+--.+|.+||+.|
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 566678999999875
No 169
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=29.22 E-value=44 Score=35.73 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHhhcCCEEEEEccCCchh
Q 018525 326 KAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~V~ 347 (354)
.+.+.+++||++|+|||++..+
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~ 311 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDR 311 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 4567888999999999998543
No 170
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.73 E-value=58 Score=34.37 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
+..+++++++++|.+|++.||++|.|+..+
T Consensus 188 ~~~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 188 GNSRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 356789999999999999999999999643
No 171
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.60 E-value=45 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.-=+|++||..
T Consensus 86 ~~N~l~gia~A~~~~~Pvl~i~G~~ 110 (595)
T PRK09107 86 ATNAVTPLQDALMDSIPLVCITGQV 110 (595)
T ss_pred HhHHHHHHHHHhhcCCCEEEEEcCC
Confidence 3467778888877777788898854
No 172
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.54 E-value=34 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=14.4
Q ss_pred CCCCCCCCCeeeceEEEcCC
Q 018525 298 IPTCQKCNGVLKPDVVFFGD 317 (354)
Q Consensus 298 iP~Cp~CgG~LrP~VVlFGE 317 (354)
.-.||+||..+.+..+--+.
T Consensus 49 ~t~CP~Cg~~~e~~fvva~~ 68 (115)
T COG1885 49 STSCPKCGEPFESAFVVANT 68 (115)
T ss_pred cccCCCCCCccceeEEEecc
Confidence 45799999888777664433
No 173
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.39 E-value=47 Score=35.07 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCcc
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGI 133 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGI 133 (354)
+-..+.+.-+++...+.--+|++||..=
T Consensus 77 pG~~N~l~~i~~A~~~~~Pvlvi~G~~~ 104 (574)
T PRK06882 77 PGATNAITGIATAYTDSVPLVILSGQVP 104 (574)
T ss_pred ccHHHHHHHHHHHhhcCCCEEEEecCCC
Confidence 3345677778887888888899988543
No 174
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.34 E-value=45 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.7
Q ss_pred HHHHHhhcCCEEEEEccCCchh
Q 018525 326 KAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~V~ 347 (354)
.+.+.+++||++|+|||++..+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~ 301 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDR 301 (587)
T ss_pred HHHHHHHhCCEEEEECCCCccc
Confidence 4566778999999999998543
No 175
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=28.15 E-value=24 Score=33.75 Aligned_cols=10 Identities=30% Similarity=0.690 Sum_probs=8.0
Q ss_pred CCCCCCCCCe
Q 018525 298 IPTCQKCNGV 307 (354)
Q Consensus 298 iP~Cp~CgG~ 307 (354)
.-+|++|||.
T Consensus 183 ~g~c~kcg~~ 192 (253)
T COG1933 183 DGKCPICGGK 192 (253)
T ss_pred cccccccCCe
Confidence 3589999993
No 176
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=28.14 E-value=39 Score=34.47 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=35.8
Q ss_pred eceEEEcCCCCCHHH---HHHHHHHhhcCCEEEEEccCCchhcccc
Q 018525 309 KPDVVFFGDNVPKDR---ADKAMEAAKECDAFLVLGSSLMTMSAYR 351 (354)
Q Consensus 309 rP~VVlFGE~lp~~~---~~~A~~~~~~aDllLVvGTSL~V~pA~~ 351 (354)
.-||++-.-++|-+. +++..++..++|++||+|..-.|-||++
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~ 401 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQ 401 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhc
Confidence 448888777888874 5666788889999999999999999986
No 177
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=28.04 E-value=47 Score=35.31 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|+++|..
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~I~G~~ 112 (585)
T CHL00099 88 ATNLVTGIATAQMDSVPLLVITGQV 112 (585)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCC
Confidence 3467788888888888899999864
No 178
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=28.03 E-value=55 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=15.7
Q ss_pred hCCceEEeecccceeeeCCCCcc
Q 018525 218 AGSNPLELHGTVYTVVCLDCGFS 240 (354)
Q Consensus 218 AG~kviELHGsl~~~~C~~C~~~ 240 (354)
.|..++++.=....-.|..|++.
T Consensus 15 ~G~~v~~v~~~~TSq~C~~CG~~ 37 (69)
T PF07282_consen 15 YGIQVVEVDEAYTSQTCPRCGHR 37 (69)
T ss_pred hCCEEEEECCCCCccCccCcccc
Confidence 45566666666666778889865
No 179
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=27.95 E-value=47 Score=34.87 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCcc
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGAGI 133 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGAGI 133 (354)
+-..+.+..+++...+.--+|++||.-=
T Consensus 73 pG~~n~~~~l~~A~~~~~Pvl~i~g~~~ 100 (548)
T PRK08978 73 PGATNLITGLADALLDSVPVVAITGQVS 100 (548)
T ss_pred CcHHHHHHHHHHHhhcCCCEEEEecCCC
Confidence 3345678888888888888999998643
No 180
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=27.82 E-value=59 Score=34.52 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||++|.|+.
T Consensus 185 ~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 185 GGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3567899999999999999999999985
No 181
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.79 E-value=61 Score=34.09 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+....+++++++|.+|++.||+.|.|.-
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 186 GHPLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3457799999999999999999999984
No 182
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=27.70 E-value=56 Score=29.29 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCcEEEEECCccC
Q 018525 113 NQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 113 ~~La~~l~~ak~iVVlTGAGIS 134 (354)
+.++++|++|++.||+.|.|+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcC
Confidence 5788889999999999999996
No 183
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=27.68 E-value=32 Score=24.14 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=8.4
Q ss_pred CCCCCCCeeec
Q 018525 300 TCQKCNGVLKP 310 (354)
Q Consensus 300 ~Cp~CgG~LrP 310 (354)
+||+||..++-
T Consensus 1 ~CP~Cg~~a~i 11 (47)
T PF04606_consen 1 RCPHCGSKARI 11 (47)
T ss_pred CcCCCCCeeEE
Confidence 59999987643
No 184
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.62 E-value=44 Score=35.59 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGA 131 (354)
.+.+.-|++...++-=+|++||-
T Consensus 77 tN~~tgla~A~~d~~Pll~itGq 99 (550)
T COG0028 77 TNLLTGLADAYMDSVPLLAITGQ 99 (550)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC
Confidence 46788899999999999999993
No 185
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.60 E-value=70 Score=33.71 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
+..+++++++++|.+|++.||+.|.|...
T Consensus 192 ~~~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 192 GNPQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 45678999999999999999999999863
No 186
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.49 E-value=27 Score=28.93 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.9
Q ss_pred CcEEEEECCccCcc
Q 018525 123 AKLIVLTGAGISTE 136 (354)
Q Consensus 123 k~iVVlTGAGISaa 136 (354)
++|+++.|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 57999999999765
No 187
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=27.39 E-value=18 Score=32.21 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHHHHHHH----cCCCceeeecCCcchhhhhC--CceEEeecccceeeeCCCCcccc
Q 018525 190 AHFALASLEK----AGRIDCMITQNVDRLHHRAG--SNPLELHGTVYTVVCLDCGFSFC 242 (354)
Q Consensus 190 ~H~aLa~L~~----~G~l~~VITQNIDgLh~rAG--~kviELHGsl~~~~C~~C~~~~~ 242 (354)
+|+-|-.+.. .|+.+..+-|.||+|--..- +.+--+.|+-+..+|. |+..|-
T Consensus 70 aHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~l 127 (156)
T COG3091 70 AHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHYL 127 (156)
T ss_pred HHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchHHHhhccccceeEEee-cCCccc
Confidence 4555544432 35566677888888865442 2455667788889999 997753
No 188
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.24 E-value=75 Score=33.58 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+...++++++++|.+|++.||+.|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 200 PNLLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999975
No 189
>PRK08611 pyruvate oxidase; Provisional
Probab=27.20 E-value=49 Score=35.08 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
..+.+..+++...+.--+|++||.-=+
T Consensus 80 ~~N~l~gla~A~~~~~Pvl~ItG~~~~ 106 (576)
T PRK08611 80 AIHLLNGLYDAKMDHVPVLALAGQVTS 106 (576)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCcc
Confidence 346777888888888889999986443
No 190
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.10 E-value=80 Score=33.55 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|.-
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 188 GHPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 3467899999999999999999999984
No 191
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=27.08 E-value=26 Score=31.93 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=20.5
Q ss_pred eeeecCCcchhhhh-CCc--eEEee---cccc--eeeeCCCCcccc
Q 018525 205 CMITQNVDRLHHRA-GSN--PLELH---GTVY--TVVCLDCGFSFC 242 (354)
Q Consensus 205 ~VITQNIDgLh~rA-G~k--viELH---Gsl~--~~~C~~C~~~~~ 242 (354)
+++--||-.--++. ++. ++|-- |.+. .++|.+|+....
T Consensus 86 fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~~~wyc~~c~~~~~ 131 (177)
T PRK13264 86 FLLPPHVPHSPQREAGSIGLVIERKRPEGELDGFQWYCDECNHKVH 131 (177)
T ss_pred EEeCCCCCcCCccCCCeEEEEEEeCCCCCCccceEEECCCCCCeEE
Confidence 55666665544442 221 34433 3333 467999997643
No 192
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.08 E-value=1.7e+02 Score=31.13 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCc--cCc----------cCCCCCcCCC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAG--IST----------ECGIPDYRSP 145 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAG--ISa----------aSGIPDFRg~ 145 (354)
|..++|++.+++|++||+-+++-|-| .+- ..|||-|=++
T Consensus 202 p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptp 252 (571)
T KOG1185|consen 202 PPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTP 252 (571)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCc
Confidence 45689999999999999955555555 443 2378776554
No 193
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=27.05 E-value=49 Score=35.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+.+.-+++...+.--+|++||.-=+
T Consensus 80 ~N~~~gla~A~~~~~Pvl~I~G~~~~ 105 (588)
T TIGR01504 80 TDMITGLYSASADSIPILCITGQAPR 105 (588)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCc
Confidence 46677888888888889999985543
No 194
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.99 E-value=50 Score=34.86 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.-=+|+++|..
T Consensus 78 ~~n~~~gla~A~~~~~Pvl~i~G~~ 102 (563)
T PRK08527 78 FTNAVTGLATAYMDSIPLVLISGQV 102 (563)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCC
Confidence 4567788888888888899999854
No 195
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=26.91 E-value=60 Score=32.08 Aligned_cols=43 Identities=21% Similarity=0.535 Sum_probs=32.3
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCCCC
Q 018525 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN 146 (354)
Q Consensus 98 ~~~~p~s~~~~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg~~ 146 (354)
++.||+..|-.....+.+.++|..- .+||.+|.| |||.+.+.+
T Consensus 158 rrvv~sp~p~~iv~~~~I~~LL~~G-~iVI~~ggg-----giPvi~e~~ 200 (310)
T TIGR00746 158 RRVVPSPRPKDIVEAETIKTLVENG-VIVISSGGG-----GVPVVLEGA 200 (310)
T ss_pred eEeecCCCchhhccHHHHHHHHHCC-CEEEeCCCC-----CcCEEecCC
Confidence 5678887777777777877777665 688888876 899988633
No 196
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.85 E-value=68 Score=27.91 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEECC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGA 131 (354)
++.++.+.+.|.+|+++||.||.
T Consensus 23 eeEve~ireyi~sA~r~vV~t~N 45 (156)
T COG4019 23 EEEVEKIREYIVSAKRIVVATNN 45 (156)
T ss_pred HHHHHHHHHHHhccceEEEecCC
Confidence 57899999999999999998875
No 197
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=26.79 E-value=75 Score=33.74 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
++.+.+++++++|++|++.||+.|.|+.
T Consensus 186 ~~~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 186 PDPAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchH
Confidence 4567899999999999999999999984
No 198
>PRK14873 primosome assembly protein PriA; Provisional
Probab=26.76 E-value=34 Score=37.36 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=13.5
Q ss_pred EeecccceeeeCCCCcc
Q 018525 224 ELHGTVYTVVCLDCGFS 240 (354)
Q Consensus 224 ELHGsl~~~~C~~C~~~ 240 (354)
.=-|....+.|.+|++.
T Consensus 376 nRrGyap~l~C~~Cg~~ 392 (665)
T PRK14873 376 PRRGYVPSLACARCRTP 392 (665)
T ss_pred cCCCCCCeeEhhhCcCe
Confidence 33688888899999975
No 199
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=26.73 E-value=44 Score=28.71 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=11.2
Q ss_pred ccceeeeCCCCcccc
Q 018525 228 TVYTVVCLDCGFSFC 242 (354)
Q Consensus 228 sl~~~~C~~C~~~~~ 242 (354)
.-....|..|+..+.
T Consensus 120 ~~~~~~C~~C~~~~~ 134 (157)
T PF10263_consen 120 KKYVYRCPSCGREYK 134 (157)
T ss_pred cceEEEcCCCCCEee
Confidence 445788999997754
No 200
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=26.55 E-value=52 Score=34.73 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
..+.+.-|++...+.--+|+++|.
T Consensus 82 ~~n~~~gl~~A~~~~~Pvl~i~G~ 105 (561)
T PRK06048 82 ATNLVTGIATAYMDSVPIVALTGQ 105 (561)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecc
Confidence 456788888888888889999884
No 201
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=26.37 E-value=80 Score=33.20 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccC
Q 018525 110 EDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
.+++.++++|.+|++.||+.|.|..
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 5789999999999999999999974
No 202
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.27 E-value=44 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.493 Sum_probs=14.6
Q ss_pred CCCCCCCCCCeeeceEEE
Q 018525 297 HIPTCQKCNGVLKPDVVF 314 (354)
Q Consensus 297 ~iP~Cp~CgG~LrP~VVl 314 (354)
..|.||-|++.|+..+.+
T Consensus 38 ~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CCccCCCcCCccccceee
Confidence 359999999999877654
No 203
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.14 E-value=38 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.735 Sum_probs=9.9
Q ss_pred eecccceeeeCCCCcc
Q 018525 225 LHGTVYTVVCLDCGFS 240 (354)
Q Consensus 225 LHGsl~~~~C~~C~~~ 240 (354)
=-|....+.|..|++.
T Consensus 207 rrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 207 RRGYSKNLLCRSCGYI 222 (505)
T ss_pred CCcCCCeeEhhhCcCc
Confidence 3456666677777654
No 204
>PLN02573 pyruvate decarboxylase
Probab=26.11 E-value=52 Score=34.99 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGA 131 (354)
.+.+.-+++...+.--+|+++|.
T Consensus 91 ~n~~~gla~A~~d~~Pvl~I~G~ 113 (578)
T PLN02573 91 LSVLNAIAGAYSENLPVICIVGG 113 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEEECC
Confidence 45677778878888889999984
No 205
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=25.93 E-value=55 Score=34.52 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCcc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGI 133 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGI 133 (354)
..+.+.-+++...+.--+|++||..=
T Consensus 80 ~~N~l~gi~~A~~~~~Pvl~i~G~~~ 105 (572)
T PRK06456 80 TTNLVTGLITAYWDSSPVIAITGQVP 105 (572)
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 34677888888888888999998643
No 206
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=25.29 E-value=78 Score=33.43 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.+++++++|.+|++.||+.|.|.+
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 186 PAEEELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECcChH
Confidence 3457899999999999999999999985
No 207
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.14 E-value=43 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.8
Q ss_pred hcCCEEEEEccCCch
Q 018525 332 KECDAFLVLGSSLMT 346 (354)
Q Consensus 332 ~~aDllLVvGTSL~V 346 (354)
.+|||+||.|+|+--
T Consensus 39 ~dAeLviV~G~sipn 53 (103)
T COG3925 39 NDAELVIVFGSSIPN 53 (103)
T ss_pred CcccEEEEeccccCC
Confidence 589999999999843
No 208
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=25.11 E-value=57 Score=34.61 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
.+.+..+++...+.--+|+++|..=+..
T Consensus 76 ~n~~~~i~~A~~~~~Pvl~I~G~~~~~~ 103 (575)
T TIGR02720 76 THLLNGLYDAKEDHVPVLALVGQVPTTG 103 (575)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccc
Confidence 4677888888888888999999654433
No 209
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=25.08 E-value=33 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.2
Q ss_pred CCCCCCCCeeece
Q 018525 299 PTCQKCNGVLKPD 311 (354)
Q Consensus 299 P~Cp~CgG~LrP~ 311 (354)
..|+.||+.+++.
T Consensus 4 rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 4 RFCGRCGAPTKPA 16 (32)
T ss_dssp SB-TTT--BEEE-
T ss_pred cccCcCCccccCC
Confidence 4799999988764
No 210
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=24.98 E-value=32 Score=30.86 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=22.5
Q ss_pred eeeecCCcchhhhhCC-c--eEEe-----ecccceeeeCCCCcccc
Q 018525 205 CMITQNVDRLHHRAGS-N--PLEL-----HGTVYTVVCLDCGFSFC 242 (354)
Q Consensus 205 ~VITQNIDgLh~rAG~-k--viEL-----HGsl~~~~C~~C~~~~~ 242 (354)
+++--|+-.-.++.+- . ++|- -++-..++|.+|+....
T Consensus 80 flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~ 125 (159)
T TIGR03037 80 FLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGFQWFCPQCGHKLH 125 (159)
T ss_pred EEeCCCCCcccccCCCcEEEEEEeCCCCCCCcceEEECCCCCCeEE
Confidence 5666677666655432 1 2332 24445688999997643
No 211
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.98 E-value=33 Score=26.66 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=5.6
Q ss_pred ceeeeCCCCccc
Q 018525 230 YTVVCLDCGFSF 241 (354)
Q Consensus 230 ~~~~C~~C~~~~ 241 (354)
...+|..|+..|
T Consensus 16 ~~~~C~~C~~~~ 27 (70)
T PF07191_consen 16 GHYHCEACQKDY 27 (70)
T ss_dssp TEEEETTT--EE
T ss_pred CEEECccccccc
Confidence 445666666544
No 212
>PRK08266 hypothetical protein; Provisional
Probab=24.74 E-value=87 Score=32.77 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 107 ~~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+..+.++++++.|.+|++.||+.|.|.+
T Consensus 190 ~~~~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 190 PDPDAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChh
Confidence 4567899999999999999999999964
No 213
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=24.61 E-value=95 Score=25.81 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCcEEEEECCccCccC---------CCCCcCCC
Q 018525 111 DINQLYQFFDNSAKLIVLTGAGISTEC---------GIPDYRSP 145 (354)
Q Consensus 111 ~i~~La~~l~~ak~iVVlTGAGISaaS---------GIPDFRg~ 145 (354)
.+..+++.. .+.++||+-||-=.-+| |=|+|-|+
T Consensus 8 rvk~~aek~-g~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 8 RIKELAEKY-GAENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHHhc-CCccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 344555443 46778888776444444 55999987
No 214
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=24.57 E-value=36 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=9.5
Q ss_pred CCCCCCCCeeec
Q 018525 299 PTCQKCNGVLKP 310 (354)
Q Consensus 299 P~Cp~CgG~LrP 310 (354)
-.||.|||.|-+
T Consensus 42 ~~CPNCgGelv~ 53 (57)
T PF06906_consen 42 GVCPNCGGELVR 53 (57)
T ss_pred CcCcCCCCcccc
Confidence 479999997754
No 215
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=24.51 E-value=35 Score=26.35 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=9.9
Q ss_pred cEEEEECCccCcc
Q 018525 124 KLIVLTGAGISTE 136 (354)
Q Consensus 124 ~iVVlTGAGISaa 136 (354)
+|++..|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 4788888888765
No 216
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=24.37 E-value=21 Score=30.20 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=19.2
Q ss_pred ceEEeecccceeeeCCCCcccchhhH
Q 018525 221 NPLELHGTVYTVVCLDCGFSFCRDLF 246 (354)
Q Consensus 221 kviELHGsl~~~~C~~C~~~~~~~~~ 246 (354)
.++|+-+.-..+.|..|...|+.+.+
T Consensus 15 ~ll~~~~~~~~~~C~~Ck~~~~v~~~ 40 (116)
T KOG2907|consen 15 SLLEEPSAQSTVLCIRCKIEYPVSQF 40 (116)
T ss_pred hhcccccccCceEeccccccCCHHHh
Confidence 46666666677779999998876544
No 217
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=24.29 E-value=67 Score=28.61 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEE
Q 018525 109 IEDINQLYQFFDNSAKLIVLT 129 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlT 129 (354)
-..++.+.+.|++|++|+|+|
T Consensus 133 f~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 133 FNTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp --SHHHHHHHHHH-SSEEEEE
T ss_pred cCcHHHHHHHHHhcCceEEeC
Confidence 455888999999999999998
No 218
>PRK11269 glyoxylate carboligase; Provisional
Probab=24.24 E-value=60 Score=34.52 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
.+.+.-+++...+.--+|++||.-
T Consensus 81 ~N~l~gl~~A~~~~~Pvl~I~G~~ 104 (591)
T PRK11269 81 TDMITGLYSASADSIPILCITGQA 104 (591)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCC
Confidence 466777888888888899999864
No 219
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=24.18 E-value=61 Score=29.28 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.2
Q ss_pred eeeeCCCCccc
Q 018525 231 TVVCLDCGFSF 241 (354)
Q Consensus 231 ~~~C~~C~~~~ 241 (354)
.++|..||+..
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 68999999764
No 220
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.17 E-value=32 Score=22.26 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=3.4
Q ss_pred CCCCCCCCCe
Q 018525 298 IPTCQKCNGV 307 (354)
Q Consensus 298 iP~Cp~CgG~ 307 (354)
.|+||.|+..
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 5899999863
No 221
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.09 E-value=87 Score=33.14 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
..+.+++++++|.+|++.||+.|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 192 HSGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 457899999999999999999999985
No 222
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=24.06 E-value=63 Score=34.17 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHHhhcCCEEEEEccCCchh
Q 018525 326 KAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~V~ 347 (354)
.+.+.+++||++|++||.+..+
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~ 298 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQN 298 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 4667788999999999998643
No 223
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.03 E-value=77 Score=33.45 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
..+.+++++++|.+|++.||+.|.|+-
T Consensus 192 ~~~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 192 HKGQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999985
No 224
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=23.88 E-value=62 Score=34.28 Aligned_cols=25 Identities=4% Similarity=0.112 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-|++...+.--+|++||.-
T Consensus 76 ~~N~~~gla~A~~~~~Pvl~I~g~~ 100 (579)
T TIGR03457 76 VTNCVTAIAAAYWAHTPVVIVTPEA 100 (579)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCC
Confidence 3467778888888888899998743
No 225
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.77 E-value=44 Score=27.82 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=12.2
Q ss_pred CcEEEEECCccCcc
Q 018525 123 AKLIVLTGAGISTE 136 (354)
Q Consensus 123 k~iVVlTGAGISaa 136 (354)
++|+++++||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999975
No 226
>PLN02573 pyruvate decarboxylase
Probab=23.46 E-value=55 Score=34.83 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
...++++++++|.+|++.||+.|.|+..
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 3467999999999999999999999863
No 227
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.44 E-value=66 Score=34.05 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+..+++...+.--+|++||.-
T Consensus 79 ~~N~l~gl~~A~~~~~Pvl~i~G~~ 103 (574)
T PRK06466 79 ATNAITGIATAYMDSIPMVVLSGQV 103 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3467788888888888899999843
No 228
>PRK07064 hypothetical protein; Provisional
Probab=23.41 E-value=64 Score=33.72 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
+-..+.+..+++...+.--+|++||.
T Consensus 76 pG~~N~~~~i~~A~~~~~Pvl~i~g~ 101 (544)
T PRK07064 76 TGAGNAAGALVEALTAGTPLLHITGQ 101 (544)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 33456778888888888889999985
No 229
>PRK12474 hypothetical protein; Provisional
Probab=23.38 E-value=72 Score=33.29 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
.+.+.-+++...+.--+|+++|..
T Consensus 81 ~N~~~gl~~A~~d~~Pvl~i~G~~ 104 (518)
T PRK12474 81 ANGLANLHNARRAASPIVNIVGDH 104 (518)
T ss_pred hHhHHHHHHHhhcCCCEEEEeccC
Confidence 356777777777888899999863
No 230
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=23.22 E-value=64 Score=33.79 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
..+.+.-+++...+.--+|++||.
T Consensus 73 ~~n~l~gl~~A~~~~~Pvl~I~G~ 96 (539)
T TIGR02418 73 CSNLVTGLATANSEGDPVVAIGGQ 96 (539)
T ss_pred HhHHHHHHHHHhhcCCCEEEEeCC
Confidence 346677788877888889999996
No 231
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=23.03 E-value=68 Score=33.75 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECC
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
..+.+.-+++...+.--+|++||.
T Consensus 83 ~~N~~~gi~~A~~~~~Pvl~i~g~ 106 (557)
T PRK08199 83 ATNASIGVHTAFQDSTPMILFVGQ 106 (557)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecC
Confidence 346777888888888889999985
No 232
>PRK08266 hypothetical protein; Provisional
Probab=23.03 E-value=62 Score=33.85 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHcCCcEEEEECC
Q 018525 106 PPSIEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 106 ~~~~~~i~~La~~l~~ak~iVVlTGA 131 (354)
+-..+.+.-+++...+.--+|++||.
T Consensus 78 pG~~N~~~gi~~A~~~~~Pvl~i~g~ 103 (542)
T PRK08266 78 PGVLNAGAALLTAYGCNSPVLCLTGQ 103 (542)
T ss_pred CcHHHHHHHHHHHHhhCCCEEEEecC
Confidence 33456777888888888889999985
No 233
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=23.00 E-value=66 Score=34.18 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
.+.+.-+++...+.--+|++||.-
T Consensus 79 ~N~~~gl~~A~~~~~Pvl~I~G~~ 102 (578)
T PRK06546 79 LHLINGLYDAHRSGAPVLAIASHI 102 (578)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 456777888888888899999844
No 234
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.92 E-value=40 Score=31.39 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.0
Q ss_pred eeeeCCCCcccchh
Q 018525 231 TVVCLDCGFSFCRD 244 (354)
Q Consensus 231 ~~~C~~C~~~~~~~ 244 (354)
...|.-|++.+...
T Consensus 5 ~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 5 KITCPVCGKEFKTK 18 (214)
T ss_pred ceECCCCCCeeeee
Confidence 57899999987544
No 235
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=22.84 E-value=66 Score=34.00 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHhhcCCEEEEEccCCc
Q 018525 326 KAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~ 345 (354)
.+.+.+++||++|++||++.
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~ 293 (571)
T PRK07710 274 TANMALYECDLLINIGARFD 293 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCC
Confidence 45667789999999999984
No 236
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.71 E-value=38 Score=20.77 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.9
Q ss_pred CCCCCCCCe
Q 018525 299 PTCQKCNGV 307 (354)
Q Consensus 299 P~Cp~CgG~ 307 (354)
..||.||..
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 346666644
No 237
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.61 E-value=41 Score=27.08 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=10.6
Q ss_pred cEEEEECCccCcc
Q 018525 124 KLIVLTGAGISTE 136 (354)
Q Consensus 124 ~iVVlTGAGISaa 136 (354)
+|+++.|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4889999999865
No 238
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=22.58 E-value=68 Score=33.72 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||.-
T Consensus 76 ~~n~l~~i~~A~~~~~Pvl~i~g~~ 100 (558)
T TIGR00118 76 ATNLVTGIATAYMDSIPMVVFTGQV 100 (558)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4567888888888888899999853
No 239
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=22.46 E-value=66 Score=37.89 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=19.6
Q ss_pred CCCCCCCCCeeeceEEEcCCCCCHHHHHHHHHHhhc
Q 018525 298 IPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKE 333 (354)
Q Consensus 298 iP~Cp~CgG~LrP~VVlFGE~lp~~~~~~A~~~~~~ 333 (354)
..+||.||+.....-.---+--..+.+..|.+.+..
T Consensus 686 ~~~Cp~CG~~~~~~~~~~~~i~~~~~~~~A~~~v~~ 721 (1627)
T PRK14715 686 YHVCPFCGTRVELKPYARREIPPKDYWYAALENLKI 721 (1627)
T ss_pred cccCcccCCcccCCCccceecCHHHHHHHHHHHhCC
Confidence 368999998633322211111223467778777643
No 240
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=22.41 E-value=47 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCcEEEEECC
Q 018525 112 INQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 112 i~~La~~l~~ak~iVVlTGA 131 (354)
+..|.++=++..++|+-||.
T Consensus 718 ~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 718 IKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHhCCcEEEeCC
Confidence 34444444567888888875
No 241
>PRK04351 hypothetical protein; Provisional
Probab=22.38 E-value=60 Score=28.66 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=12.8
Q ss_pred ecccceeeeCCCCcccc
Q 018525 226 HGTVYTVVCLDCGFSFC 242 (354)
Q Consensus 226 HGsl~~~~C~~C~~~~~ 242 (354)
-+.-+..+|.+|+..+.
T Consensus 107 ~~~~y~Y~C~~Cg~~~~ 123 (149)
T PRK04351 107 QKKNYLYECQSCGQQYL 123 (149)
T ss_pred CCceEEEECCCCCCEee
Confidence 35556789999998763
No 242
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=22.11 E-value=52 Score=28.71 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCEEEEEccCCchhc
Q 018525 325 DKAMEAAKECDAFLVLGSSLMTMS 348 (354)
Q Consensus 325 ~~A~~~~~~aDllLVvGTSL~V~p 348 (354)
..+.+.+.+||++|+-||||.=-.
T Consensus 54 ~~~~~~l~~aD~viiTGsTlvN~T 77 (147)
T PF04016_consen 54 EDAEEILPWADVVIITGSTLVNGT 77 (147)
T ss_dssp GGHHHHGGG-SEEEEECHHCCTTT
T ss_pred HHHHHHHccCCEEEEEeeeeecCC
Confidence 457778889999999999986443
No 243
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=22.03 E-value=72 Score=33.90 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHhhcCCEEEEEccCCc
Q 018525 326 KAMEAAKECDAFLVLGSSLM 345 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~ 345 (354)
.+.+.+++||++|+|||++.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~ 281 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFS 281 (586)
T ss_pred HHHHHHHcCCEEEEECCCCC
Confidence 56677889999999999975
No 244
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=21.90 E-value=71 Score=33.74 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSG 138 (354)
.+.+.-+++...+.--+|++||..=+...|
T Consensus 79 ~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~ 108 (574)
T PRK09124 79 LHLINGLFDCHRNHVPVLAIAAHIPSSEIG 108 (574)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCccccCC
Confidence 456677888888888899999975554443
No 245
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=21.82 E-value=76 Score=33.28 Aligned_cols=25 Identities=4% Similarity=-0.152 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCcEEEEECCccC
Q 018525 110 EDINQLYQFFDNSAKLIVLTGAGIS 134 (354)
Q Consensus 110 ~~i~~La~~l~~ak~iVVlTGAGIS 134 (354)
+.+++++++|.+|++.||+.|.|.-
T Consensus 193 ~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 193 AFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEeChhhc
Confidence 3488999999999999999999984
No 246
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=21.71 E-value=76 Score=36.14 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCCCCCCCeeeceEEEcCCCCCH-HHHHHHHHHhhc
Q 018525 299 PTCQKCNGVLKPDVVFFGDNVPK-DRADKAMEAAKE 333 (354)
Q Consensus 299 P~Cp~CgG~LrP~VVlFGE~lp~-~~~~~A~~~~~~ 333 (354)
.+||+||+.-.|.-.- .-.++- +.+..|.+.+..
T Consensus 638 ~rCP~CG~~Te~~~pc-~~~i~l~~~~~~A~~~lg~ 672 (1095)
T TIGR00354 638 LKCPVCGELTEQLYYG-KRKVDLRELYEEAIANLGE 672 (1095)
T ss_pred ccCCCCCCccccccce-eEEecHHHHHHHHHHHhCC
Confidence 5899999875444333 112332 356777776643
No 247
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=21.70 E-value=42 Score=30.29 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=10.6
Q ss_pred CCCCCCCCCeeec
Q 018525 298 IPTCQKCNGVLKP 310 (354)
Q Consensus 298 iP~Cp~CgG~LrP 310 (354)
.-+||.|||.|.+
T Consensus 97 ~~RCp~CN~~L~~ 109 (165)
T COG1656 97 FSRCPECNGELEK 109 (165)
T ss_pred cccCcccCCEecc
Confidence 4589999998765
No 248
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.46 E-value=45 Score=27.53 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.8
Q ss_pred CcEEEEECCccCcc
Q 018525 123 AKLIVLTGAGISTE 136 (354)
Q Consensus 123 k~iVVlTGAGISaa 136 (354)
++|+++.|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999965
No 249
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.40 E-value=57 Score=36.06 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.3
Q ss_pred ceEEeecccceeeeCCCCccc
Q 018525 221 NPLELHGTVYTVVCLDCGFSF 241 (354)
Q Consensus 221 kviELHGsl~~~~C~~C~~~~ 241 (354)
..+.+|=.=+..+|.+|+...
T Consensus 434 ~~l~C~~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 434 PLLLCRDCGYIAECPNCDSPL 454 (730)
T ss_pred ceeecccCCCcccCCCCCcce
Confidence 578888888889999998654
No 250
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=21.30 E-value=50 Score=22.66 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=9.5
Q ss_pred CCCCCCCCeee
Q 018525 299 PTCQKCNGVLK 309 (354)
Q Consensus 299 P~Cp~CgG~Lr 309 (354)
..||.||+.|.
T Consensus 3 ~~C~~Cg~~l~ 13 (47)
T PF13005_consen 3 RACPDCGGELK 13 (47)
T ss_pred CcCCCCCceee
Confidence 36999999887
No 251
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.24 E-value=1e+02 Score=27.18 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
.++++++++.|.+|++ |++.|-|-|..
T Consensus 20 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~ 46 (179)
T cd05005 20 EEELDKLISAILNAKR-IFVYGAGRSGL 46 (179)
T ss_pred HHHHHHHHHHHHhCCe-EEEEecChhHH
Confidence 4789999999999976 67778887743
No 252
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=21.22 E-value=60 Score=34.16 Aligned_cols=25 Identities=20% Similarity=0.030 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+..+++...+.--+|++||..
T Consensus 84 ~~N~l~~i~~A~~~~~Pvl~IsG~~ 108 (568)
T PRK07449 84 VANLYPAVIEAGLTGVPLIVLTADR 108 (568)
T ss_pred HHhhhHHHHHHhhcCCcEEEEECCC
Confidence 3466777777777888899998863
No 253
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.06 E-value=41 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=11.9
Q ss_pred CCCCCCCCCCeeece
Q 018525 297 HIPTCQKCNGVLKPD 311 (354)
Q Consensus 297 ~iP~Cp~CgG~LrP~ 311 (354)
.-|.||.||+.|+-.
T Consensus 349 ~~p~Cp~Cg~~m~S~ 363 (421)
T COG1571 349 VNPVCPRCGGRMKSA 363 (421)
T ss_pred cCCCCCccCCchhhc
Confidence 359999999988753
No 254
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=21.01 E-value=97 Score=30.75 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=29.1
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHcCCcEEEEECCccCccCCCCCcCC
Q 018525 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS 144 (354)
Q Consensus 98 ~~~~p~s~~~~~~~i~~La~~l~~ak~iVVlTGAGISaaSGIPDFRg 144 (354)
++.||+..|-..-+.+.+..+|. ...|+|++|-| |||-|..
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe-~G~IvI~~GgG-----GiPV~~~ 201 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVE-NGFIVIASGGG-----GIPVIEE 201 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHH-CCCEEEEeCCC-----ccceEcC
Confidence 45677777766556667666665 57899998877 7887764
No 255
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.97 E-value=77 Score=33.40 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHHHhhcCCEEEEEccCCchh
Q 018525 326 KAMEAAKECDAFLVLGSSLMTM 347 (354)
Q Consensus 326 ~A~~~~~~aDllLVvGTSL~V~ 347 (354)
.+.+.+++||++|++|+++...
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~ 291 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDR 291 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 3556778999999999998543
No 256
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=20.95 E-value=54 Score=34.71 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEECC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGA 131 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGA 131 (354)
.+.+.-+++...+.--+|+++|.
T Consensus 88 ~N~~~gla~A~~d~~Pvl~I~G~ 110 (569)
T PRK08327 88 ANALGGVHNAARSRIPVLVFAGR 110 (569)
T ss_pred HHHHHHHHHHhhcCCCEEEEecc
Confidence 46777888888888889999885
No 257
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.88 E-value=96 Score=27.22 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
.++++++.+.|.++++ |++.|.|.|.
T Consensus 17 ~~~~~~~~~~l~~a~~-I~i~G~G~S~ 42 (179)
T TIGR03127 17 EEELDKLADKIIKAKR-IFVAGAGRSG 42 (179)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHH
Confidence 4789999999999885 7778888774
No 258
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=20.82 E-value=97 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCcc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTE 136 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaa 136 (354)
.+++++++++|.+|++ |++.|.|.|..
T Consensus 115 ~~~l~~~~~~i~~a~~-I~i~G~G~s~~ 141 (278)
T PRK11557 115 EEKLHECVTMLRSARR-IILTGIGASGL 141 (278)
T ss_pred HHHHHHHHHHHhcCCe-EEEEecChhHH
Confidence 4678889999999997 66778887744
No 259
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=20.80 E-value=64 Score=33.93 Aligned_cols=27 Identities=0% Similarity=0.048 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCc
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGIST 135 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISa 135 (354)
.+.+++++++|.+|++.||+.|.|+..
T Consensus 188 ~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 188 DACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 467889999999999999999999863
No 260
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=20.69 E-value=85 Score=20.95 Aligned_cols=13 Identities=38% Similarity=1.165 Sum_probs=6.8
Q ss_pred cccCCCCCCCCCC
Q 018525 293 EEDFHIPTCQKCN 305 (354)
Q Consensus 293 ~~~~~iP~Cp~Cg 305 (354)
..+|.++.|.+|.
T Consensus 19 ~~~F~~~VCD~CR 31 (34)
T PF01286_consen 19 LNNFDLPVCDKCR 31 (34)
T ss_dssp CCCTS-S--TTT-
T ss_pred HHhCCcccccccc
Confidence 3467889999885
No 261
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=20.44 E-value=89 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEECCccCccCC
Q 018525 109 IEDINQLYQFFDNSAKLIVLTGAGISTECG 138 (354)
Q Consensus 109 ~~~i~~La~~l~~ak~iVVlTGAGISaaSG 138 (354)
.+++++++++|.+|++ |++.|.|.|...+
T Consensus 115 ~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 115 PSAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred HHHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 4678899999999986 7888999886554
No 262
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.34 E-value=52 Score=26.93 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.1
Q ss_pred eeeeCCCCcccc
Q 018525 231 TVVCLDCGFSFC 242 (354)
Q Consensus 231 ~~~C~~C~~~~~ 242 (354)
-.+|-+||..+.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 468999998753
No 263
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.21 E-value=61 Score=21.91 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=10.1
Q ss_pred CCCCCCCeeeceEE
Q 018525 300 TCQKCNGVLKPDVV 313 (354)
Q Consensus 300 ~Cp~CgG~LrP~VV 313 (354)
.||+|+..|.+..+
T Consensus 1 ~CP~C~~~l~~~~~ 14 (41)
T PF13453_consen 1 KCPRCGTELEPVRL 14 (41)
T ss_pred CcCCCCcccceEEE
Confidence 48888887776554
No 264
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=20.21 E-value=51 Score=20.78 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=5.3
Q ss_pred CCCCCCCeee
Q 018525 300 TCQKCNGVLK 309 (354)
Q Consensus 300 ~Cp~CgG~Lr 309 (354)
.||.||..|.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4999998765
No 265
>PRK08617 acetolactate synthase; Reviewed
Probab=20.11 E-value=76 Score=33.33 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEECCc
Q 018525 108 SIEDINQLYQFFDNSAKLIVLTGAG 132 (354)
Q Consensus 108 ~~~~i~~La~~l~~ak~iVVlTGAG 132 (354)
..+.+.-+++...+.--+|++||.-
T Consensus 79 ~~N~l~gl~~A~~~~~PvlvisG~~ 103 (552)
T PRK08617 79 VSNLATGLVTATAEGDPVVAIGGQV 103 (552)
T ss_pred HhHhHHHHHHHhhcCCCEEEEecCC
Confidence 3466777888888888899999853
Done!