Query 018527
Match_columns 354
No_of_seqs 247 out of 724
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00756 VKc Family of likel 100.0 1.4E-28 3E-33 215.1 14.6 130 63-198 5-141 (142)
2 PRK14889 VKOR family protein; 99.9 1.2E-25 2.7E-30 197.2 14.5 128 65-199 11-141 (143)
3 PF07884 VKOR: Vitamin K epoxi 99.9 4E-25 8.6E-30 191.1 12.6 128 65-198 4-137 (137)
4 COG4243 Predicted membrane pro 99.9 1.4E-23 3.1E-28 185.1 13.1 136 60-201 8-150 (156)
5 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 7.3E-13 1.6E-17 107.2 7.1 70 268-345 22-101 (101)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.4 1.2E-12 2.5E-17 110.6 7.7 70 268-345 33-113 (113)
7 cd02996 PDI_a_ERp44 PDIa famil 99.4 2.8E-12 6E-17 105.2 8.6 80 258-345 10-108 (108)
8 KOG0190 Protein disulfide isom 99.3 7.8E-13 1.7E-17 135.9 5.0 72 268-347 46-130 (493)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1.1E-11 2.3E-16 100.6 8.1 70 268-345 23-104 (104)
10 cd02994 PDI_a_TMX PDIa family, 99.3 2.1E-11 4.6E-16 98.3 8.7 77 261-345 13-99 (101)
11 PF00085 Thioredoxin: Thioredo 99.3 3.6E-11 7.8E-16 95.6 9.4 72 266-345 19-100 (103)
12 cd03002 PDI_a_MPD1_like PDI fa 99.2 2.7E-11 5.8E-16 98.4 7.7 72 268-345 22-108 (109)
13 cd03007 PDI_a_ERp29_N PDIa fam 99.2 1.9E-11 4.1E-16 104.2 6.5 77 268-347 22-114 (116)
14 cd02956 ybbN ybbN protein fami 99.2 6.5E-11 1.4E-15 94.4 8.6 70 268-345 16-95 (96)
15 cd03005 PDI_a_ERp46 PDIa famil 99.2 4.1E-11 9E-16 95.9 7.0 69 268-344 20-101 (102)
16 cd02999 PDI_a_ERp44_like PDIa 99.2 7.1E-11 1.5E-15 96.9 7.7 81 257-344 10-99 (100)
17 cd02993 PDI_a_APS_reductase PD 99.2 1.1E-10 2.5E-15 96.3 8.3 73 266-345 23-109 (109)
18 TIGR00411 redox_disulf_1 small 99.2 1.1E-10 2.3E-15 90.2 7.7 71 267-345 2-78 (82)
19 cd03001 PDI_a_P5 PDIa family, 99.2 1.2E-10 2.5E-15 93.4 7.7 70 268-345 22-102 (103)
20 PHA02125 thioredoxin-like prot 99.1 4.1E-10 8.9E-15 87.6 8.4 69 268-346 2-74 (75)
21 PTZ00443 Thioredoxin domain-co 99.1 7.8E-10 1.7E-14 104.0 11.7 70 268-345 56-135 (224)
22 PHA02278 thioredoxin-like prot 99.1 7.1E-10 1.5E-14 92.2 9.9 86 256-345 4-101 (103)
23 cd02963 TRX_DnaJ TRX domain, D 99.1 3.5E-10 7.5E-15 94.1 7.6 70 268-345 28-108 (111)
24 cd03000 PDI_a_TMX3 PDIa family 99.1 4E-10 8.7E-15 91.9 7.1 70 268-345 19-100 (104)
25 cd02998 PDI_a_ERp38 PDIa famil 99.1 3.8E-10 8.2E-15 90.2 6.7 70 268-344 22-104 (105)
26 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 5.4E-10 1.2E-14 89.3 7.2 68 268-344 22-103 (104)
27 PTZ00102 disulphide isomerase; 99.0 1.1E-09 2.3E-14 110.8 10.7 74 266-347 51-136 (477)
28 cd02997 PDI_a_PDIR PDIa family 99.0 1.6E-09 3.5E-14 86.8 8.3 71 268-344 21-103 (104)
29 cd02985 TRX_CDSP32 TRX family, 99.0 1.8E-09 3.9E-14 88.5 8.4 85 257-347 4-101 (103)
30 TIGR02196 GlrX_YruB Glutaredox 99.0 1.8E-09 3.9E-14 80.6 7.2 72 268-345 2-73 (74)
31 cd02992 PDI_a_QSOX PDIa family 99.0 1.7E-09 3.6E-14 90.8 7.7 79 259-343 11-110 (114)
32 PRK09381 trxA thioredoxin; Pro 98.9 3.3E-09 7.1E-14 86.8 7.9 70 268-345 25-104 (109)
33 KOG4277 Uncharacterized conser 98.9 6.1E-10 1.3E-14 108.3 3.6 72 268-347 47-130 (468)
34 cd02947 TRX_family TRX family; 98.9 6.1E-09 1.3E-13 79.5 8.2 73 265-345 11-92 (93)
35 cd02948 TRX_NDPK TRX domain, T 98.9 7.7E-09 1.7E-13 84.5 9.1 78 258-345 9-99 (102)
36 cd03065 PDI_b_Calsequestrin_N 98.9 4.6E-09 9.9E-14 89.9 7.5 80 258-345 18-115 (120)
37 TIGR01126 pdi_dom protein disu 98.9 5.6E-09 1.2E-13 82.9 6.9 70 268-345 17-98 (102)
38 PRK10996 thioredoxin 2; Provis 98.8 1.9E-08 4.1E-13 87.3 9.8 80 258-345 44-135 (139)
39 cd02961 PDI_a_family Protein D 98.8 1.4E-08 3.1E-13 79.2 8.1 80 258-345 7-101 (101)
40 cd02949 TRX_NTR TRX domain, no 98.8 1.8E-08 3.9E-13 81.2 8.9 70 268-345 17-96 (97)
41 cd02953 DsbDgamma DsbD gamma f 98.8 1.2E-08 2.6E-13 82.9 7.8 83 259-345 4-103 (104)
42 TIGR01068 thioredoxin thioredo 98.8 1.6E-08 3.5E-13 79.8 8.1 70 268-345 18-97 (101)
43 cd02975 PfPDO_like_N Pyrococcu 98.8 2.1E-08 4.5E-13 84.1 8.2 79 259-345 15-106 (113)
44 TIGR00424 APS_reduc 5'-adenyly 98.8 1.4E-08 3.1E-13 104.5 8.5 73 268-346 375-460 (463)
45 cd02984 TRX_PICOT TRX domain, 98.8 2.6E-08 5.7E-13 79.2 8.1 71 268-345 18-96 (97)
46 cd02950 TxlA TRX-like protein 98.8 2.2E-08 4.9E-13 87.3 8.2 74 267-346 23-107 (142)
47 cd02973 TRX_GRX_like Thioredox 98.8 1.2E-08 2.6E-13 76.6 5.6 62 267-334 2-66 (67)
48 PLN02309 5'-adenylylsulfate re 98.8 1.9E-08 4.1E-13 103.5 8.9 73 267-346 368-454 (457)
49 KOG0190 Protein disulfide isom 98.8 7.9E-09 1.7E-13 106.7 5.9 73 268-350 388-474 (493)
50 PTZ00051 thioredoxin; Provisio 98.8 3.8E-08 8.3E-13 78.5 8.7 77 258-343 10-97 (98)
51 TIGR01130 ER_PDI_fam protein d 98.8 2.2E-08 4.7E-13 100.0 8.5 72 268-347 22-107 (462)
52 cd02962 TMX2 TMX2 family; comp 98.7 6.1E-08 1.3E-12 86.1 9.5 71 268-346 51-149 (152)
53 PRK00293 dipZ thiol:disulfide 98.7 1E-06 2.3E-11 93.0 20.3 75 268-346 478-567 (571)
54 TIGR00412 redox_disulf_2 small 98.7 5.1E-08 1.1E-12 76.3 7.3 69 268-346 3-76 (76)
55 KOG0191 Thioredoxin/protein di 98.7 1.8E-08 4E-13 100.6 5.9 83 256-346 39-131 (383)
56 cd02954 DIM1 Dim1 family; Dim1 98.7 3.2E-08 7E-13 84.2 6.3 55 268-330 18-79 (114)
57 TIGR02180 GRX_euk Glutaredoxin 98.7 3.3E-08 7.2E-13 76.6 5.8 75 268-343 1-76 (84)
58 PTZ00102 disulphide isomerase; 98.7 3.2E-08 6.8E-13 100.1 7.2 74 268-349 379-465 (477)
59 cd02965 HyaE HyaE family; HyaE 98.7 5.1E-08 1.1E-12 82.6 7.2 68 268-343 31-110 (111)
60 cd02951 SoxW SoxW family; SoxW 98.7 1.2E-07 2.6E-12 79.6 9.0 88 258-345 5-115 (125)
61 TIGR01295 PedC_BrcD bacterioci 98.7 1.2E-07 2.6E-12 80.9 8.7 88 258-345 15-120 (122)
62 TIGR02187 GlrX_arch Glutaredox 98.6 1E-07 2.2E-12 88.1 8.3 75 265-345 134-212 (215)
63 KOG1731 FAD-dependent sulfhydr 98.6 3.9E-08 8.5E-13 102.3 5.4 66 268-339 61-143 (606)
64 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.3E-07 2.9E-12 76.5 7.4 80 258-343 5-88 (89)
65 TIGR02187 GlrX_arch Glutaredox 98.6 1.1E-07 2.4E-12 87.9 7.8 74 265-344 20-106 (215)
66 PF13098 Thioredoxin_2: Thiore 98.6 8.1E-08 1.8E-12 78.4 5.9 79 267-345 8-112 (112)
67 cd02957 Phd_like Phosducin (Ph 98.6 9.2E-08 2E-12 79.5 5.2 61 268-337 28-97 (113)
68 cd02989 Phd_like_TxnDC9 Phosdu 98.5 3.1E-07 6.7E-12 77.1 8.2 65 258-330 14-86 (113)
69 cd02976 NrdH NrdH-redoxin (Nrd 98.5 5.3E-07 1.1E-11 67.1 6.9 71 268-344 2-72 (73)
70 PHA03050 glutaredoxin; Provisi 98.4 9.4E-07 2E-11 74.3 7.8 84 258-342 5-90 (108)
71 TIGR02189 GlrX-like_plant Glut 98.4 5.9E-07 1.3E-11 74.1 6.5 80 261-342 3-82 (99)
72 COG3118 Thioredoxin domain-con 98.4 7.6E-07 1.6E-11 86.8 7.8 90 250-347 28-128 (304)
73 KOG0912 Thiol-disulfide isomer 98.4 2.9E-07 6.3E-12 89.9 3.9 73 268-348 17-105 (375)
74 TIGR02200 GlrX_actino Glutared 98.4 1.4E-06 2.9E-11 66.2 6.7 70 268-344 2-74 (77)
75 cd03419 GRX_GRXh_1_2_like Glut 98.3 9.1E-07 2E-11 68.4 5.6 74 268-343 2-75 (82)
76 PRK11200 grxA glutaredoxin 1; 98.3 1.1E-06 2.4E-11 69.6 5.7 73 267-343 2-80 (85)
77 KOG0191 Thioredoxin/protein di 98.3 7.1E-07 1.5E-11 89.3 5.4 77 263-347 161-250 (383)
78 TIGR02181 GRX_bact Glutaredoxi 98.3 1.7E-06 3.7E-11 67.1 5.7 71 268-343 1-71 (79)
79 TIGR02190 GlrX-dom Glutaredoxi 98.3 1.7E-06 3.6E-11 67.9 5.4 68 265-338 7-74 (79)
80 cd02066 GRX_family Glutaredoxi 98.2 1.7E-06 3.6E-11 63.9 5.0 70 268-342 2-71 (72)
81 PLN00410 U5 snRNP protein, DIM 98.2 6.7E-06 1.5E-10 72.6 9.2 82 256-345 11-116 (142)
82 TIGR01130 ER_PDI_fam protein d 98.2 1.9E-06 4E-11 86.1 6.5 73 268-350 368-455 (462)
83 TIGR02183 GRXA Glutaredoxin, G 98.2 2.5E-06 5.4E-11 68.2 5.4 74 268-343 2-79 (86)
84 TIGR02194 GlrX_NrdH Glutaredox 98.2 5.5E-06 1.2E-10 63.7 6.6 71 268-344 1-71 (72)
85 PF00462 Glutaredoxin: Glutare 98.2 2.1E-06 4.6E-11 63.5 4.1 59 268-331 1-59 (60)
86 cd03418 GRX_GRXb_1_3_like Glut 98.2 3.8E-06 8.3E-11 64.1 5.7 71 268-343 2-73 (75)
87 cd03027 GRX_DEP Glutaredoxin ( 98.2 2.4E-06 5.3E-11 65.6 4.4 70 268-342 3-72 (73)
88 TIGR00365 monothiol glutaredox 98.1 9.6E-06 2.1E-10 66.6 7.2 80 257-343 3-89 (97)
89 KOG0907 Thioredoxin [Posttrans 98.1 7.3E-06 1.6E-10 68.8 6.5 68 268-344 25-101 (106)
90 cd02959 ERp19 Endoplasmic reti 98.1 8.4E-06 1.8E-10 68.9 6.8 72 254-330 9-88 (117)
91 cd03010 TlpA_like_DsbE TlpA-li 98.0 1.4E-05 3E-10 66.9 7.2 85 257-341 18-126 (127)
92 COG0695 GrxC Glutaredoxin and 98.0 1.9E-05 4.1E-10 62.8 7.5 75 267-345 2-77 (80)
93 cd02952 TRP14_like Human TRX-r 98.0 2E-05 4.3E-10 67.6 7.8 87 257-344 10-117 (119)
94 KOG0910 Thioredoxin-like prote 98.0 1.1E-05 2.4E-10 71.8 6.1 80 258-345 52-144 (150)
95 PF13192 Thioredoxin_3: Thiore 98.0 1.4E-05 3.1E-10 62.3 5.9 70 268-345 3-75 (76)
96 cd03029 GRX_hybridPRX5 Glutare 98.0 1.5E-05 3.3E-10 60.9 5.7 69 267-344 2-70 (72)
97 PRK10638 glutaredoxin 3; Provi 98.0 1.7E-05 3.7E-10 62.5 5.8 72 267-343 3-74 (83)
98 PRK10329 glutaredoxin-like pro 98.0 3.7E-05 8.1E-10 61.2 7.7 69 268-345 3-73 (81)
99 cd03028 GRX_PICOT_like Glutare 97.9 1.7E-05 3.7E-10 63.9 5.6 78 261-343 3-85 (90)
100 cd02982 PDI_b'_family Protein 97.9 2.1E-05 4.5E-10 63.1 6.0 71 267-345 15-99 (103)
101 PRK03147 thiol-disulfide oxido 97.9 5E-05 1.1E-09 66.5 8.8 89 257-345 54-168 (173)
102 cd02987 Phd_like_Phd Phosducin 97.9 3.8E-05 8.3E-10 69.5 7.5 54 268-330 87-146 (175)
103 cd02955 SSP411 TRX domain, SSP 97.9 3.8E-05 8.3E-10 66.1 7.1 76 254-330 5-92 (124)
104 TIGR02740 TraF-like TraF-like 97.9 4.7E-05 1E-09 73.6 8.5 89 257-345 159-260 (271)
105 TIGR00385 dsbE periplasmic pro 97.9 0.00012 2.5E-09 65.4 10.3 78 268-345 67-167 (173)
106 cd03011 TlpA_like_ScsD_MtbDsbE 97.8 5.7E-05 1.2E-09 62.4 7.1 86 257-344 13-121 (123)
107 cd02986 DLP Dim1 family, Dim1- 97.8 8.9E-05 1.9E-09 63.3 7.6 55 268-330 18-79 (114)
108 TIGR02738 TrbB type-F conjugat 97.7 0.00017 3.7E-09 64.2 9.1 81 264-344 50-148 (153)
109 PRK14018 trifunctional thiored 97.7 0.00018 4E-09 75.5 10.4 79 268-346 60-170 (521)
110 PRK15412 thiol:disulfide inter 97.7 0.00062 1.3E-08 61.6 11.9 77 268-344 72-171 (185)
111 cd02966 TlpA_like_family TlpA- 97.6 0.0001 2.2E-09 58.0 5.5 74 257-330 12-109 (116)
112 TIGR03143 AhpF_homolog putativ 97.6 0.00019 4.1E-09 75.5 8.8 85 254-346 465-555 (555)
113 cd02988 Phd_like_VIAF Phosduci 97.6 0.00016 3.5E-09 66.6 7.3 69 268-345 106-188 (192)
114 cd03023 DsbA_Com1_like DsbA fa 97.6 0.00029 6.3E-09 59.6 8.2 34 312-345 120-153 (154)
115 smart00594 UAS UAS domain. 97.6 0.00029 6.3E-09 59.7 8.2 96 246-345 9-121 (122)
116 cd01659 TRX_superfamily Thiore 97.5 0.00018 3.9E-09 49.4 5.0 55 269-328 2-60 (69)
117 cd02958 UAS UAS family; UAS is 97.5 0.00046 1E-08 57.3 7.6 88 254-345 7-107 (114)
118 cd03009 TryX_like_TryX_NRX Try 97.4 0.00018 3.9E-09 60.6 4.7 74 257-330 11-111 (131)
119 KOG1752 Glutaredoxin and relat 97.4 0.00056 1.2E-08 57.5 7.5 83 258-342 6-88 (104)
120 PF13899 Thioredoxin_7: Thiore 97.4 0.00025 5.5E-09 55.6 5.0 32 255-286 8-39 (82)
121 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.00019 4.2E-09 65.2 4.7 35 310-344 161-196 (197)
122 PTZ00062 glutaredoxin; Provisi 97.4 0.00067 1.5E-08 63.3 8.1 74 256-344 6-89 (204)
123 cd02964 TryX_like_family Trypa 97.3 0.00029 6.2E-09 59.8 4.7 76 255-330 8-111 (132)
124 PRK15317 alkyl hydroperoxide r 97.3 0.00068 1.5E-08 70.5 8.3 88 253-348 104-197 (517)
125 PRK10824 glutaredoxin-4; Provi 97.3 0.00094 2E-08 57.1 7.0 81 257-342 6-91 (115)
126 PRK12759 bifunctional gluaredo 97.2 0.0005 1.1E-08 70.1 6.3 69 267-340 3-79 (410)
127 cd02960 AGR Anterior Gradient 97.2 0.0016 3.4E-08 56.9 8.0 36 254-289 13-49 (130)
128 PTZ00062 glutaredoxin; Provisi 97.1 0.0013 2.8E-08 61.4 7.2 82 255-343 102-190 (204)
129 KOG0908 Thioredoxin-like prote 97.0 0.0008 1.7E-08 64.7 5.0 69 259-335 12-93 (288)
130 KOG0913 Thiol-disulfide isomer 97.0 0.00016 3.4E-09 68.7 0.2 72 268-347 43-124 (248)
131 COG4232 Thiol:disulfide interc 97.0 0.017 3.6E-07 61.3 14.8 72 270-345 480-564 (569)
132 PRK13728 conjugal transfer pro 97.0 0.0033 7.1E-08 57.8 8.3 77 268-344 73-166 (181)
133 cd02972 DsbA_family DsbA famil 97.0 0.0024 5.1E-08 49.2 6.4 67 269-335 2-97 (98)
134 cd02967 mauD Methylamine utili 97.0 0.00087 1.9E-08 54.6 3.9 55 268-325 25-82 (114)
135 TIGR03140 AhpF alkyl hydropero 96.9 0.0024 5.3E-08 66.4 7.9 86 254-347 106-197 (515)
136 PRK10877 protein disulfide iso 96.8 0.003 6.6E-08 59.6 6.7 37 310-346 191-228 (232)
137 PF13905 Thioredoxin_8: Thiore 96.6 0.0037 8E-08 49.4 4.6 63 268-330 5-94 (95)
138 COG0526 TrxA Thiol-disulfide i 96.3 0.0095 2.1E-07 45.6 5.6 70 272-346 40-121 (127)
139 TIGR02661 MauD methylamine deh 96.2 0.011 2.5E-07 53.6 6.5 78 268-345 78-175 (189)
140 PLN02919 haloacid dehalogenase 96.2 0.013 2.7E-07 66.6 8.1 78 268-345 424-532 (1057)
141 PF13728 TraF: F plasmid trans 96.2 0.03 6.5E-07 52.5 9.1 86 258-343 114-212 (215)
142 PF08534 Redoxin: Redoxin; In 96.0 0.016 3.6E-07 49.3 6.1 82 255-337 19-136 (146)
143 cd03031 GRX_GRX_like Glutaredo 95.9 0.014 3.1E-07 51.8 5.2 71 268-343 2-82 (147)
144 cd03012 TlpA_like_DipZ_like Tl 95.6 0.034 7.3E-07 46.6 6.2 32 257-288 16-47 (126)
145 PRK11509 hydrogenase-1 operon 95.3 0.039 8.5E-07 48.3 5.6 45 294-346 72-121 (132)
146 cd03008 TryX_like_RdCVF Trypar 95.1 0.019 4E-07 51.0 3.3 21 268-288 29-49 (146)
147 PF13462 Thioredoxin_4: Thiore 94.8 0.031 6.7E-07 47.9 3.7 35 311-345 126-160 (162)
148 COG2143 Thioredoxin-related pr 94.8 0.071 1.5E-06 48.4 6.0 80 268-347 46-147 (182)
149 cd03060 GST_N_Omega_like GST_N 94.4 0.17 3.8E-06 38.1 6.7 57 269-331 2-59 (71)
150 cd03022 DsbA_HCCA_Iso DsbA fam 93.9 0.074 1.6E-06 47.1 4.2 36 311-346 157-192 (192)
151 KOG2501 Thioredoxin, nucleored 93.7 0.049 1.1E-06 49.1 2.7 70 261-330 29-127 (157)
152 PF06110 DUF953: Eukaryotic pr 93.6 0.039 8.4E-07 47.5 1.8 62 272-335 34-105 (119)
153 cd00570 GST_N_family Glutathio 93.6 0.45 9.7E-06 33.8 7.2 60 269-333 2-61 (71)
154 PRK11657 dsbG disulfide isomer 93.3 0.14 3E-06 49.0 5.3 37 311-347 209-250 (251)
155 cd00340 GSH_Peroxidase Glutath 93.2 0.24 5.3E-06 43.0 6.2 32 257-289 15-46 (152)
156 PF00578 AhpC-TSA: AhpC/TSA fa 92.9 0.23 5E-06 40.5 5.4 33 256-288 17-50 (124)
157 PRK13703 conjugal pilus assemb 92.8 0.66 1.4E-05 44.8 9.0 80 264-343 143-235 (248)
158 cd03017 PRX_BCP Peroxiredoxin 92.7 0.39 8.5E-06 40.2 6.6 88 257-344 16-138 (140)
159 cd02969 PRX_like1 Peroxiredoxi 92.7 0.34 7.3E-06 42.7 6.4 78 257-334 17-126 (171)
160 TIGR02739 TraF type-F conjugat 92.6 0.59 1.3E-05 45.3 8.5 85 259-343 145-242 (256)
161 PRK00611 putative disulfide ox 92.6 0.63 1.4E-05 41.0 7.9 60 68-133 70-131 (135)
162 PF01323 DSBA: DSBA-like thior 92.4 0.16 3.5E-06 44.8 4.0 35 311-345 157-192 (193)
163 PF14595 Thioredoxin_9: Thiore 92.3 0.11 2.3E-06 45.1 2.7 81 252-337 29-118 (129)
164 PF03190 Thioredox_DsbH: Prote 92.2 0.26 5.6E-06 44.7 5.2 72 253-330 26-114 (163)
165 cd02991 UAS_ETEA UAS family, E 92.0 0.75 1.6E-05 39.0 7.5 85 255-346 8-110 (116)
166 cd03051 GST_N_GTT2_like GST_N 91.5 0.57 1.2E-05 34.6 5.6 60 269-331 2-62 (74)
167 cd03036 ArsC_like Arsenate Red 91.4 0.25 5.5E-06 41.3 3.9 34 268-302 1-34 (111)
168 cd03037 GST_N_GRX2 GST_N famil 91.1 0.71 1.5E-05 34.6 5.8 58 269-333 2-60 (71)
169 cd03035 ArsC_Yffb Arsenate Red 91.1 0.25 5.4E-06 41.2 3.5 49 268-318 1-49 (105)
170 cd03045 GST_N_Delta_Epsilon GS 91.0 0.96 2.1E-05 33.8 6.4 61 268-331 1-61 (74)
171 PTZ00056 glutathione peroxidas 91.0 0.46 9.9E-06 43.8 5.5 34 256-289 31-64 (199)
172 TIGR01617 arsC_related transcr 90.9 0.24 5.3E-06 41.6 3.4 64 268-334 1-65 (117)
173 cd02977 ArsC_family Arsenate R 90.9 0.29 6.3E-06 40.1 3.8 35 268-303 1-35 (105)
174 PLN02399 phospholipid hydroper 90.4 1.1 2.4E-05 42.8 7.7 33 256-288 91-123 (236)
175 TIGR01626 ytfJ_HI0045 conserve 89.9 0.93 2E-05 41.8 6.5 83 263-345 58-176 (184)
176 PRK03113 putative disulfide ox 89.8 1.6 3.6E-05 38.5 7.7 63 66-133 69-135 (139)
177 KOG3425 Uncharacterized conser 89.6 0.29 6.3E-06 42.5 2.8 69 267-336 29-113 (128)
178 TIGR02540 gpx7 putative glutat 89.2 1.1 2.4E-05 38.8 6.2 31 257-287 15-45 (153)
179 cd02970 PRX_like2 Peroxiredoxi 89.0 0.62 1.4E-05 39.1 4.4 64 257-324 15-84 (149)
180 cd03040 GST_N_mPGES2 GST_N fam 88.7 1.2 2.7E-05 33.7 5.5 51 268-328 2-54 (77)
181 cd03059 GST_N_SspA GST_N famil 88.7 2.1 4.5E-05 31.8 6.7 58 268-331 1-58 (73)
182 cd03024 DsbA_FrnE DsbA family, 88.4 0.63 1.4E-05 41.6 4.2 35 311-345 165-200 (201)
183 PF13417 GST_N_3: Glutathione 88.2 2 4.3E-05 32.7 6.4 58 270-333 1-58 (75)
184 PF05768 DUF836: Glutaredoxin- 87.6 3.6 7.8E-05 32.2 7.7 69 268-345 2-80 (81)
185 PRK01655 spxA transcriptional 86.3 0.94 2E-05 39.1 4.0 34 268-302 2-35 (131)
186 cd03015 PRX_Typ2cys Peroxiredo 86.2 2.4 5.2E-05 37.5 6.7 33 256-288 21-54 (173)
187 cd03019 DsbA_DsbA DsbA family, 85.8 0.86 1.9E-05 39.6 3.6 29 311-339 133-161 (178)
188 COG1651 DsbG Protein-disulfide 85.4 1.1 2.3E-05 41.7 4.2 37 310-346 204-240 (244)
189 cd03032 ArsC_Spx Arsenate Redu 84.4 1.3 2.9E-05 37.0 3.9 34 268-302 2-35 (115)
190 KOG0914 Thioredoxin-like prote 84.3 5 0.00011 38.5 8.0 65 258-330 138-216 (265)
191 cd03014 PRX_Atyp2cys Peroxired 83.7 1.1 2.3E-05 38.0 3.1 34 256-289 18-52 (143)
192 PRK13190 putative peroxiredoxi 83.3 3.7 8E-05 37.8 6.7 90 256-345 19-150 (202)
193 PRK10382 alkyl hydroperoxide r 82.7 3.5 7.6E-05 37.8 6.3 90 256-345 23-152 (187)
194 PRK12559 transcriptional regul 82.5 1.6 3.4E-05 37.9 3.7 35 268-303 2-36 (131)
195 cd03016 PRX_1cys Peroxiredoxin 81.5 5.3 0.00012 36.6 7.0 33 257-289 17-51 (203)
196 cd03055 GST_N_Omega GST_N fami 81.5 5.5 0.00012 31.5 6.2 58 268-331 19-77 (89)
197 PTZ00256 glutathione peroxidas 81.0 3.2 7E-05 37.3 5.3 32 256-288 32-65 (183)
198 cd03056 GST_N_4 GST_N family, 80.9 6.8 0.00015 28.8 6.3 60 269-332 2-62 (73)
199 PRK10954 periplasmic protein d 80.4 1.6 3.5E-05 40.1 3.2 37 311-347 157-202 (207)
200 cd03041 GST_N_2GST_N GST_N fam 79.4 5.4 0.00012 30.5 5.4 54 268-328 2-57 (77)
201 cd03018 PRX_AhpE_like Peroxire 78.6 1.8 3.9E-05 36.6 2.7 34 255-288 18-53 (149)
202 COG4545 Glutaredoxin-related p 78.4 2.9 6.2E-05 33.7 3.6 65 269-334 5-78 (85)
203 PRK00522 tpx lipid hydroperoxi 77.2 2.4 5.1E-05 37.7 3.2 34 256-289 36-70 (167)
204 cd03033 ArsC_15kD Arsenate Red 76.2 3.4 7.4E-05 34.9 3.7 50 267-318 1-50 (113)
205 PRK09437 bcp thioredoxin-depen 76.0 3.4 7.3E-05 35.5 3.7 32 256-288 22-55 (154)
206 PRK01749 disulfide bond format 75.9 16 0.00034 33.3 8.2 58 69-130 81-158 (176)
207 PRK13344 spxA transcriptional 75.6 4.3 9.4E-05 35.2 4.3 34 268-302 2-35 (132)
208 PRK02110 disulfide bond format 72.6 23 0.00051 32.0 8.4 60 68-132 79-159 (169)
209 PTZ00253 tryparedoxin peroxida 71.7 7.9 0.00017 35.3 5.2 90 256-345 28-160 (199)
210 PRK04388 disulfide bond format 70.3 21 0.00046 32.3 7.6 62 68-133 78-161 (172)
211 PF07098 DUF1360: Protein of u 69.9 10 0.00023 32.0 5.1 19 177-195 59-77 (105)
212 PRK13189 peroxiredoxin; Provis 68.7 11 0.00024 35.4 5.6 89 257-345 27-159 (222)
213 PF13462 Thioredoxin_4: Thiore 68.1 5.3 0.00011 34.0 3.1 21 268-288 16-36 (162)
214 cd03019 DsbA_DsbA DsbA family, 67.3 4.6 0.0001 35.0 2.6 24 266-289 17-40 (178)
215 COG2761 FrnE Predicted dithiol 66.0 7.3 0.00016 37.2 3.8 32 312-343 175-207 (225)
216 PRK15000 peroxidase; Provision 63.7 21 0.00045 32.9 6.3 90 256-345 25-158 (200)
217 cd02971 PRX_family Peroxiredox 61.9 10 0.00022 31.4 3.7 21 268-288 26-47 (140)
218 PLN02412 probable glutathione 61.9 6 0.00013 35.1 2.3 33 256-288 21-53 (167)
219 cd03058 GST_N_Tau GST_N family 58.3 40 0.00086 25.1 6.1 56 268-332 1-60 (74)
220 PF14673 DUF4459: Domain of un 58.2 3.7 8.1E-05 35.4 0.3 17 268-289 93-109 (159)
221 COG1495 DsbB Disulfide bond fo 57.5 85 0.0018 28.5 9.0 48 148-197 14-61 (170)
222 cd03021 DsbA_GSTK DsbA family, 57.4 14 0.00029 33.9 3.9 35 312-346 170-209 (209)
223 TIGR03137 AhpC peroxiredoxin. 56.8 8 0.00017 35.0 2.3 32 257-288 24-56 (187)
224 PRK01749 disulfide bond format 56.3 95 0.0021 28.2 9.2 29 165-194 29-57 (176)
225 cd02968 SCO SCO (an acronym fo 55.7 8.4 0.00018 32.1 2.1 32 257-288 15-47 (142)
226 PRK02110 disulfide bond format 55.3 75 0.0016 28.7 8.3 29 165-194 29-57 (169)
227 TIGR01598 holin_phiLC3 holin, 53.1 66 0.0014 25.9 6.7 34 195-229 29-62 (78)
228 PF13743 Thioredoxin_5: Thiore 52.2 9.4 0.0002 34.4 1.9 32 311-342 137-175 (176)
229 PRK10606 btuE putative glutath 50.6 21 0.00046 32.7 4.0 73 256-330 17-102 (183)
230 PRK10954 periplasmic protein d 49.7 8.3 0.00018 35.4 1.2 21 266-286 39-59 (207)
231 TIGR00014 arsC arsenate reduct 49.3 28 0.0006 29.2 4.2 50 268-319 1-50 (114)
232 PRK04388 disulfide bond format 47.8 1.2E+02 0.0027 27.3 8.5 33 165-198 26-58 (172)
233 COG3019 Predicted metal-bindin 47.6 33 0.00072 30.8 4.5 76 268-348 28-103 (149)
234 PRK04307 putative disulfide ox 45.9 1.3E+02 0.0027 28.8 8.5 31 166-197 42-72 (218)
235 COG3531 Predicted protein-disu 44.9 15 0.00032 34.7 2.1 22 311-332 164-187 (212)
236 PF13848 Thioredoxin_6: Thiore 40.3 1.8E+02 0.0038 25.0 8.1 68 270-345 101-182 (184)
237 PRK01103 formamidopyrimidine/5 40.3 5.5 0.00012 38.5 -1.6 11 272-282 264-274 (274)
238 COG0266 Nei Formamidopyrimidin 39.5 6.3 0.00014 38.7 -1.3 10 272-281 264-273 (273)
239 KOG0911 Glutaredoxin-related p 38.8 25 0.00053 33.7 2.5 66 268-339 21-93 (227)
240 cd03053 GST_N_Phi GST_N family 38.8 1.5E+02 0.0033 21.8 6.5 71 268-345 2-73 (76)
241 PF05297 Herpes_LMP1: Herpesvi 38.0 11 0.00023 37.6 0.0 16 164-180 65-80 (381)
242 COG1138 CcmF Cytochrome c biog 37.8 2E+02 0.0042 31.8 9.4 65 68-133 125-193 (648)
243 PLN02412 probable glutathione 37.3 93 0.002 27.5 5.9 91 249-344 44-159 (167)
244 PRK10853 putative reductase; P 37.2 42 0.00092 28.5 3.5 51 268-320 2-52 (118)
245 COG3529 Predicted nucleic-acid 36.7 19 0.00042 27.8 1.2 28 274-304 11-40 (66)
246 PRK02935 hypothetical protein; 34.8 24 0.00051 30.1 1.6 15 275-289 72-86 (110)
247 cd03034 ArsC_ArsC Arsenate Red 34.8 61 0.0013 26.9 4.1 49 268-318 1-49 (112)
248 PF01216 Calsequestrin: Calseq 34.3 1.1E+02 0.0024 31.4 6.5 70 268-345 55-140 (383)
249 PRK14811 formamidopyrimidine-D 32.6 6.5 0.00014 38.1 -2.5 14 272-285 254-267 (269)
250 cd03054 GST_N_Metaxin GST_N fa 32.5 1.3E+02 0.0028 22.1 5.2 53 274-344 14-68 (72)
251 PRK03113 putative disulfide ox 31.9 3.2E+02 0.007 24.1 8.3 31 164-195 24-54 (139)
252 KOG3029 Glutathione S-transfer 31.7 1.5E+02 0.0033 29.7 6.8 66 255-330 76-145 (370)
253 cd03030 GRX_SH3BGR Glutaredoxi 31.1 1.1E+02 0.0023 25.0 4.8 61 277-342 17-81 (92)
254 COG3634 AhpF Alkyl hydroperoxi 30.8 1.1E+02 0.0024 31.8 5.8 84 256-345 104-194 (520)
255 cd03067 PDI_b_PDIR_N PDIb fami 30.2 70 0.0015 27.4 3.6 83 256-345 9-108 (112)
256 TIGR03145 cyt_nit_nrfE cytochr 29.9 7.9E+02 0.017 27.1 13.2 37 96-133 157-193 (628)
257 PF11023 DUF2614: Protein of u 29.9 58 0.0013 28.1 3.1 14 276-289 72-85 (114)
258 PF04531 Phage_holin_1: Bacter 29.0 1.9E+02 0.0041 23.3 5.9 20 211-230 47-66 (84)
259 PRK02983 lysS lysyl-tRNA synth 28.5 2E+02 0.0044 33.6 8.2 19 179-197 111-129 (1094)
260 PF07912 ERp29_N: ERp29, N-ter 28.5 2.1E+02 0.0046 25.1 6.4 49 295-346 58-116 (126)
261 cd03049 GST_N_3 GST_N family, 27.9 2.4E+02 0.0053 20.6 6.1 57 269-331 2-61 (73)
262 cd03038 GST_N_etherase_LigE GS 27.4 1.3E+02 0.0028 22.9 4.6 65 274-345 14-79 (84)
263 PRK09481 sspA stringent starva 26.6 2.1E+02 0.0045 25.8 6.5 58 268-331 11-68 (211)
264 cd03052 GST_N_GDAP1 GST_N fami 25.9 2.7E+02 0.0057 21.0 6.0 60 268-331 1-61 (73)
265 PRK13945 formamidopyrimidine-D 25.8 14 0.00031 35.9 -1.4 10 272-281 273-282 (282)
266 PRK10263 DNA translocase FtsK; 25.7 8.1E+02 0.018 29.6 12.1 15 115-129 76-90 (1355)
267 PF13848 Thioredoxin_6: Thiore 25.4 1E+02 0.0023 26.4 4.1 34 311-345 31-71 (184)
268 TIGR01616 nitro_assoc nitrogen 24.6 91 0.002 26.9 3.5 21 268-288 3-23 (126)
269 cd03025 DsbA_FrnE_like DsbA fa 24.6 50 0.0011 29.0 2.0 17 311-327 159-175 (193)
270 PF09526 DUF2387: Probable met 24.4 8.8 0.00019 30.3 -2.6 27 275-304 10-38 (71)
271 PRK14810 formamidopyrimidine-D 23.6 18 0.00039 35.1 -1.2 11 271-281 262-272 (272)
272 COG3917 NahD 2-hydroxychromene 23.6 95 0.002 29.2 3.5 34 311-344 166-199 (203)
273 PRK09437 bcp thioredoxin-depen 23.6 4.2E+02 0.009 22.4 7.5 77 253-340 50-144 (154)
274 PRK00611 putative disulfide ox 23.0 4.3E+02 0.0093 23.3 7.4 34 161-195 20-53 (135)
275 TIGR03143 AhpF_homolog putativ 22.8 3.9E+02 0.0084 28.4 8.5 62 267-336 369-441 (555)
276 COG1393 ArsC Arsenate reductas 22.0 1.6E+02 0.0034 25.2 4.4 22 268-289 3-24 (117)
277 PF07760 DUF1616: Protein of u 21.9 7.4E+02 0.016 24.0 9.7 19 109-128 27-45 (287)
278 PRK15035 cytochrome bd-II oxid 21.9 1.8E+02 0.0039 31.2 5.7 31 109-139 90-122 (514)
279 PRK10026 arsenate reductase; P 21.7 1.5E+02 0.0033 26.2 4.4 22 267-288 3-24 (141)
280 PF06953 ArsD: Arsenical resis 21.5 1.1E+02 0.0025 26.4 3.5 44 310-353 61-106 (123)
281 PF02114 Phosducin: Phosducin; 21.4 1.5E+02 0.0033 28.8 4.7 56 268-330 150-209 (265)
282 cd02983 P5_C P5 family, C-term 21.4 2.3E+02 0.0051 24.2 5.5 36 311-346 69-112 (130)
283 PRK10445 endonuclease VIII; Pr 20.8 21 0.00046 34.4 -1.3 10 272-281 254-263 (263)
284 TIGR00577 fpg formamidopyrimid 20.6 23 0.0005 34.3 -1.1 9 272-280 264-272 (272)
285 cd03042 GST_N_Zeta GST_N famil 20.1 3.4E+02 0.0074 19.5 5.8 60 269-332 2-62 (73)
No 1
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=99.96 E-value=1.4e-28 Score=215.12 Aligned_cols=130 Identities=37% Similarity=0.570 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcC-----CCCCCCCC-ccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh-cc
Q 018527 63 YGWCAGIGGVGFLETTYLSYLKLTN-----SDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-AR 135 (354)
Q Consensus 63 ~~~i~~La~iGll~S~YLt~~k~~~-----~~~~C~i~-~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~-~~ 135 (354)
..++++++++|+++|.||+++|+.. +++.||+| ..||++|++||||++||+||+++|+++|++++.+++.. .+
T Consensus 5 ~~~~~~l~~iGl~~S~yl~~~~~~~~~~~~~~~~C~~~~~~sC~~Vl~S~~a~~~GiP~s~lG~~~y~~~~~l~~~~~~~ 84 (142)
T smart00756 5 RWILLILGLIGLLASLYLTYEKLTLLEDPDYVASCDINPVVSCGKVLSSPYASIFGIPLSLLGIAAYLVVLALAVLGLLG 84 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcCCCCCCCCHHHHhcChhHHHcCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 4456789999999999999999853 34899999 88999999999999999999999999999999998875 44
Q ss_pred ccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhh
Q 018527 136 KSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (354)
Q Consensus 136 ~~l~~~l~~~~~~w~ll~~s~~~~v~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~~ 198 (354)
.+.+ ++.|+.++.+++++.++++|++|++.++ ||++||||+++|++++++|+++..+
T Consensus 85 ~~~~-----~~~~~~l~~~~~~~~~~s~yl~y~~~~v-i~~~C~~C~~~~~~~~~lf~~~~~~ 141 (142)
T smart00756 85 VTLP-----RWTWRLLFLGSLAGAVFSVYLIYLLVFV-IKALCLYCILSAVVSISLFILVTIG 141 (142)
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHhc
Confidence 4444 4556677777888889999999999988 6999999999999999999988764
No 2
>PRK14889 VKOR family protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=197.17 Aligned_cols=128 Identities=24% Similarity=0.382 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH--hcCCCCCCCCC-ccCcccccccccccccCCchhHHHHHHHHHHHHHHHHhccccCCcc
Q 018527 65 WCAGIGGVGFLETTYLSYLK--LTNSDAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLLARKSFPIG 141 (354)
Q Consensus 65 ~i~~La~iGll~S~YLt~~k--~~~~~~~C~i~-~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~~~~~l~~~ 141 (354)
++++++++|+++|.|++++| .++++++||+| ..||++|++||||++||+||+++|+++|.+++.+++..... .+.+
T Consensus 11 ll~~~~~iGl~~S~~l~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~fGiP~s~lGl~~f~~~l~l~~~~~~~-~~~~ 89 (143)
T PRK14889 11 LLLAFSLVGLIASIASYLLFTLLVKPPPFCTINSVINCSSVLSSPYARFLGIPLDYLGAAWFSANIALALLGVGT-LKRI 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHhcCccHHHcCCchHHHHHHHHHHHHHHHHHHHcc-hhHH
Confidence 34688999999999999877 35788999999 78999999999999999999999999999999998875221 1101
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhhh
Q 018527 142 INESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEF 199 (354)
Q Consensus 142 l~~~~~~w~ll~~s~~~~v~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~~~ 199 (354)
+ +........+..+++.||+|++.|+ ||++||||+++|++++.+|++.+...
T Consensus 90 ~-----~~~~~~~~~~g~~~~~yL~y~~~fv-i~a~C~~C~~~~~~~~~~~~~~~~~~ 141 (143)
T PRK14889 90 L-----GRVISLWSIIGLAIVPYLVYLEVFV-LGAICIYCTIAHVSILAAFILILIKL 141 (143)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHH-HccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111112233457899999999988 69999999999999999998876543
No 3
>PF07884 VKOR: Vitamin K epoxide reductase family; InterPro: IPR012932 Vitamin K epoxide reductase (VKOR) recycles reduced vitamin K, which is used subsequently as a co-factor in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. VKORC1 is a member of a large family of predicted enzymes that are present in vertebrates, Drosophila, plants, bacteria and archaea []. Four cysteine residues and one residue, which is either serine or threonine, are identified as likely active-site residues []. In some plant and bacterial homologues the VKORC1 homologous domain is fused with domains of the thioredoxin family of oxidoreductases []. ; PDB: 3KP9_A.
Probab=99.92 E-value=4e-25 Score=191.12 Aligned_cols=128 Identities=35% Similarity=0.624 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCC----CCCCCCC-ccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh-ccccC
Q 018527 65 WCAGIGGVGFLETTYLSYLKLTNS----DAFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL-ARKSF 138 (354)
Q Consensus 65 ~i~~La~iGll~S~YLt~~k~~~~----~~~C~i~-~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~-~~~~l 138 (354)
++.+++++|+++|.||+++++... .++||++ ..||++|++||||++||+||+++|+++|..++.+++.. .+.+.
T Consensus 4 ~~~~l~liGl~~s~~l~~~~~~~~~~~~~~~C~~~~~~~C~~Vl~S~~a~~~Gip~a~~G~~~f~~~l~~~~~~~~~~~~ 83 (137)
T PF07884_consen 4 LLLALSLIGLLVSIYLLYVEMGLSRPGYSPFCDIGPRISCDAVLNSPYAKIFGIPLALLGLAFFAFLLLLALLGLARRRL 83 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------S-----------SGGGSSSSEETTEEHHHHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccccCCCCcccCCCHHHHhhccchhhccCCchHHHHHHHHHHHHHHHHHhhccch
Confidence 567899999999999999999654 4999998 89999999999999999999999999999999988865 32233
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhh
Q 018527 139 PIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (354)
Q Consensus 139 ~~~l~~~~~~w~ll~~s~~~~v~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~~ 198 (354)
+ ++.+..++..++++.++++|+.|++.++ ++++|+||+++|++++.++++++.+
T Consensus 84 ~-----~~~~~~l~~~~~~~~~~~~~l~~~~~~~-i~~~C~~Cl~~~~i~~~l~~l~~~~ 137 (137)
T PF07884_consen 84 S-----RWLWLLLFALSFIGLVFSLYLIYIQIFV-IKAWCPYCLVSYAINLALFILSLIR 137 (137)
T ss_dssp S-----TTHHHHHHHHHHHHHHHHHHHHHHHHTT-S----HHHHHHHHHHHHHHHHHHS-
T ss_pred h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3 3445666666777778999999999877 7999999999999999999988754
No 4
>COG4243 Predicted membrane protein [Function unknown]
Probab=99.90 E-value=1.4e-23 Score=185.07 Aligned_cols=136 Identities=27% Similarity=0.386 Sum_probs=106.8
Q ss_pred CchhHHH-HHHHHHHHHHHHHHHHhH---hcCCC--CCCCCC-ccCcccccccccccccCCchhHHHHHHHHHHHHHHHH
Q 018527 60 FSPYGWC-AGIGGVGFLETTYLSYLK---LTNSD--AFCPIG-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLL 132 (354)
Q Consensus 60 ~~~~~~i-~~La~iGll~S~YLt~~k---~~~~~--~~C~i~-~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~ 132 (354)
+...+|. ..++++|.+.+.-+++++ ++++. ..|+.| ..||++|++||||++||+||+++|+++|++|++++++
T Consensus 8 p~~~~~~~~i~G~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~C~sVl~Sp~A~~lGIPl~llG~a~Ft~~~i~all 87 (156)
T COG4243 8 PWILGWKVLILGVIGGLLSLSLMAEKLRSLLGGGYACSCDANGIVSCSSVLSSPYATILGIPLSLLGIAYFTAVLIAALL 87 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccccccccccHHHHHcCcchhccCCchHHHHHHHHHHHHHHHHH
Confidence 4445553 345555555555444444 45443 556666 8899999999999999999999999999999999988
Q ss_pred hccccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhhhhh
Q 018527 133 LARKSFPIGINESYGRLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLKEFSV 201 (354)
Q Consensus 133 ~~~~~l~~~l~~~~~~w~ll~~s~~~~v~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~~~~~ 201 (354)
.-...++ +++|+.++..++.+.+++.||+|++.+. +|++|+||+++|+.++.+|++...+++|
T Consensus 88 ~~~~~l~-----~~~~~~l~v~~~~g~~f~~yLiY~e~~~-~~alC~YCtv~h~~~l~~~vl~~~~~~~ 150 (156)
T COG4243 88 GVAGVLE-----RWTWIGLLVGSLVGSAFVPYLIYLELFV-IGALCLYCTVAHLSILLLFVLATAGRRW 150 (156)
T ss_pred HHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7222233 5667777777888889999999988876 6999999999999999999999988877
No 5
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.39 E-value=7.3e-13 Score=107.22 Aligned_cols=70 Identities=20% Similarity=0.400 Sum_probs=57.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-----cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-----~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
+++|.|+||+||+++++.|.+.|.+ .+..|||+.+ .++|++++|++|||+.+ +|+ +|.|.++
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~ 93 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--------RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRS 93 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--------HHHHHHcCCCccCEEEEEcCCCCcccCCCCCC
Confidence 5577799999999999999875432 2457999853 48899999999999877 775 6999999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.+++
T Consensus 94 ~~~l~~f~ 101 (101)
T cd03003 94 KESLVKFA 101 (101)
T ss_pred HHHHHhhC
Confidence 99998874
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.38 E-value=1.2e-12 Score=110.64 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=57.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhh-hhCCCCccceeeE--CCE---EeeCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKAC-SDAKIEGFPTWVI--NGQ---VLSGEQ 336 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC-~~~~I~gyPTw~i--nG~---~y~G~r 336 (354)
+++|.|+||+||+.+++.|.+.|.+ . +..|||+.+ .++| ++++|++|||+++ ||+ +|.|.+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--------~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~ 104 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--------QGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPM 104 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--------hHHHHHhcCCcccCEEEEEECCccceEEeCCC
Confidence 6677799999999999999886532 2 357999854 3789 5899999999877 775 799999
Q ss_pred CHHHHHHHh
Q 018527 337 DLSDLAKAS 345 (354)
Q Consensus 337 ~l~~La~~s 345 (354)
+.++|.+|.
T Consensus 105 ~~~~i~~~~ 113 (113)
T cd03006 105 RAPYMEKFV 113 (113)
T ss_pred CHHHHHhhC
Confidence 999998863
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.36 E-value=2.8e-12 Score=105.19 Aligned_cols=80 Identities=21% Similarity=0.397 Sum_probs=61.3
Q ss_pred HHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc---------c--CceeECCCCCCCCCcchhHhhhhCCCCccce
Q 018527 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK---------Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (354)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~---------~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPT 324 (354)
.+.+++++.+ +++|+|+||+||+++++.|.+.+.+ + +.+|||+.+ .++|++++|++|||
T Consensus 10 ~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--------~~l~~~~~v~~~Pt 81 (108)
T cd02996 10 NIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--------SDIADRYRINKYPT 81 (108)
T ss_pred hHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--------HHHHHhCCCCcCCE
Confidence 3444554444 4577799999999999999764421 2 347999864 48999999999999
Q ss_pred eeE--CCE----EeeCCCCHHHHHHHh
Q 018527 325 WVI--NGQ----VLSGEQDLSDLAKAS 345 (354)
Q Consensus 325 w~i--nG~----~y~G~r~l~~La~~s 345 (354)
.++ ||+ +|.|.|+.++|.++.
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 887 775 689999999998873
No 8
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.8e-13 Score=135.90 Aligned_cols=72 Identities=24% Similarity=0.440 Sum_probs=60.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G 334 (354)
.+.|+||||+||+++.|.|.+.|.. .+..|||+.+ .++|.+++|+||||.+| ||+ .|.|
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--------~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G 117 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--------SDLASKYEVRGYPTLKIFRNGRSAQDYNG 117 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--------hhhHhhhcCCCCCeEEEEecCCcceeccC
Confidence 4566699999999999999986531 2568999974 48999999999999998 886 6999
Q ss_pred CCCHHHHHHHhCC
Q 018527 335 EQDLSDLAKASGF 347 (354)
Q Consensus 335 ~r~l~~La~~sg~ 347 (354)
.|+.|.+++|+--
T Consensus 118 ~r~adgIv~wl~k 130 (493)
T KOG0190|consen 118 PREADGIVKWLKK 130 (493)
T ss_pred cccHHHHHHHHHh
Confidence 9999999998743
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.29 E-value=1.1e-11 Score=100.57 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=56.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC-E---EeeCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSGEQ 336 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG-~---~y~G~r 336 (354)
+++|+|+||+||+++++.|.+.+.+ . +..|||+.+ .++|++++|++|||..+ +| + +|.|.+
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--------ESLCQQANIRAYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--------HHHHHHcCCCcccEEEEEcCCCCCceEccCCC
Confidence 5677799999999999999875532 1 457999853 58999999999999877 55 4 799998
Q ss_pred C-HHHHHHHh
Q 018527 337 D-LSDLAKAS 345 (354)
Q Consensus 337 ~-l~~La~~s 345 (354)
+ .++|.++.
T Consensus 95 ~~~~~l~~~i 104 (104)
T cd03004 95 RDADSILEFI 104 (104)
T ss_pred CCHHHHHhhC
Confidence 7 99998763
No 10
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.26 E-value=2.1e-11 Score=98.31 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=60.8
Q ss_pred HHhcccCeEEEecCCCHHHHHHHHHHhHHHh--c--c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--
Q 018527 261 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-- 330 (354)
Q Consensus 261 ~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~--~--~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~-- 330 (354)
+.++..-+++|.|+|||||+++++.|.+.+. + . +..|||+.+ .++|++++|++|||..+ +|+
T Consensus 13 ~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--------~~~~~~~~i~~~Pt~~~~~~g~~~ 84 (101)
T cd02994 13 LVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--------PGLSGRFFVTALPTIYHAKDGVFR 84 (101)
T ss_pred HHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--------HhHHHHcCCcccCEEEEeCCCCEE
Confidence 3444455778889999999999999987542 1 1 347898753 47899999999999776 776
Q ss_pred EeeCCCCHHHHHHHh
Q 018527 331 VLSGEQDLSDLAKAS 345 (354)
Q Consensus 331 ~y~G~r~l~~La~~s 345 (354)
+|.|.++.++|.++.
T Consensus 85 ~~~G~~~~~~l~~~i 99 (101)
T cd02994 85 RYQGPRDKEDLISFI 99 (101)
T ss_pred EecCCCCHHHHHHHH
Confidence 699999999998875
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.25 E-value=3.6e-11 Score=95.61 Aligned_cols=72 Identities=22% Similarity=0.430 Sum_probs=59.0
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHHh--c-cC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC
Q 018527 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--K-QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 335 (354)
Q Consensus 266 ~g~k~YgA~WCpHC~~qk~~fgk~A~--~-~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 335 (354)
.-+++|+++||+||+++++.|.+.+. + .+ -.|||+.+ .++|++++|+++||+.+ ||+ +|.|.
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--------KELCKKYGVKSVPTIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--------HHHHHHTTCSSSSEEEEEETTEEEEEEESS
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--------chhhhccCCCCCCEEEEEECCcEEEEEECC
Confidence 33678889999999999999987542 2 23 37998743 58999999999999887 776 79999
Q ss_pred CCHHHHHHHh
Q 018527 336 QDLSDLAKAS 345 (354)
Q Consensus 336 r~l~~La~~s 345 (354)
++.++|.++.
T Consensus 91 ~~~~~l~~~i 100 (103)
T PF00085_consen 91 RNAESLIEFI 100 (103)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999874
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.23 E-value=2.7e-11 Score=98.45 Aligned_cols=72 Identities=24% Similarity=0.461 Sum_probs=57.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--------Ee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--------VL 332 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--------~y 332 (354)
+++|.|+||+||+++++.|.+.+.+ . +..|||+.+. ..++|++++|++|||..+ +|+ .|
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~------~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~ 95 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK------NKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDY 95 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc------cHHHHHHcCCCcCCEEEEEeCCCcccccccccc
Confidence 5577799999999999999875422 2 3468998642 358999999999999877 442 69
Q ss_pred eCCCCHHHHHHHh
Q 018527 333 SGEQDLSDLAKAS 345 (354)
Q Consensus 333 ~G~r~l~~La~~s 345 (354)
.|.++.++|.+|.
T Consensus 96 ~G~~~~~~l~~fi 108 (109)
T cd03002 96 NGERSAKAIVDFV 108 (109)
T ss_pred cCccCHHHHHHHh
Confidence 9999999999874
No 13
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.22 E-value=1.9e-11 Score=104.19 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=60.3
Q ss_pred eEEEec--CCCH---HHHHHHHHHhHHHh-ccCceeECCCCCCCCCcchhHhhhhCCCC--ccceeeE--CCE-----Ee
Q 018527 268 AKMYGA--FWCS---HCLEQKQMFGSEAV-KQLNYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--NGQ-----VL 332 (354)
Q Consensus 268 ~k~YgA--~WCp---HC~~qk~~fgk~A~-~~l~yVeC~~~g~~~~~~~~~lC~~~~I~--gyPTw~i--nG~-----~y 332 (354)
.++|.| |||+ ||+++.+.|.+.+. -.+..|||+..|.. ...++|++++|+ ||||.++ ||+ .|
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~---~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y 98 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEK---LNMELGERYKLDKESYPVIYLFHGGDFENPVPY 98 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccch---hhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccC
Confidence 345559 9999 99999999987442 23678999754321 136899999999 9999876 773 69
Q ss_pred eCC-CCHHHHHHHhCC
Q 018527 333 SGE-QDLSDLAKASGF 347 (354)
Q Consensus 333 ~G~-r~l~~La~~sg~ 347 (354)
+|. |+.++|.+|..-
T Consensus 99 ~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 99 SGADVTVDALQRFLKG 114 (116)
T ss_pred CCCcccHHHHHHHHHh
Confidence 997 999999998753
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.20 E-value=6.5e-11 Score=94.42 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=57.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
++.|.|+||+||+++++.|.+.+.+ . +-.|||+.+ .++|++++|+++||.++ ||+ ++.|.++
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 87 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--------PQIAQQFGVQALPTVYLFAAGQPVDGFQGAQP 87 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--------HHHHHHcCCCCCCEEEEEeCCEEeeeecCCCC
Confidence 5677799999999999999775421 2 347888753 58999999999999887 786 6999999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 88 ~~~l~~~l 95 (96)
T cd02956 88 EEQLRQML 95 (96)
T ss_pred HHHHHHHh
Confidence 99999875
No 15
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.19 E-value=4.1e-11 Score=95.86 Aligned_cols=69 Identities=26% Similarity=0.597 Sum_probs=55.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh--c----c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV--K----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSG 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~--~----~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G 334 (354)
+++|+|+||+||+++++.|.+.+. + + +..|||+++ .++|++++|+++||+.+ +|+ +|.|
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G 91 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--------RELCSEFQVRGYPTLLLFKDGEKVDKYKG 91 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--------hhhHhhcCCCcCCEEEEEeCCCeeeEeeC
Confidence 557779999999999999976432 1 2 347899764 47899999999999776 675 6999
Q ss_pred CCCHHHHHHH
Q 018527 335 EQDLSDLAKA 344 (354)
Q Consensus 335 ~r~l~~La~~ 344 (354)
.++.++|.++
T Consensus 92 ~~~~~~l~~~ 101 (102)
T cd03005 92 TRDLDSLKEF 101 (102)
T ss_pred CCCHHHHHhh
Confidence 9999999876
No 16
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.18 E-value=7.1e-11 Score=96.86 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=58.8
Q ss_pred HHHHHHhcccC-eEEEecCCCHHHHHHHHHHhHHHh--ccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC
Q 018527 257 LSLAKHLHAIG-AKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 329 (354)
Q Consensus 257 ~~la~~L~~~g-~k~YgA~WCpHC~~qk~~fgk~A~--~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG 329 (354)
.++...++... ++.|.|+||+||+++++.|.+.+. ..+. .||++.+ ..++|++++|++|||..+ +|
T Consensus 10 ~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~-------~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 10 LDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSI-------KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCC-------CHHHHHhcCCeecCEEEEEcCC
Confidence 33444444433 556779999999999999987542 2343 4555411 358999999999999876 55
Q ss_pred E--EeeCCCCHHHHHHH
Q 018527 330 Q--VLSGEQDLSDLAKA 344 (354)
Q Consensus 330 ~--~y~G~r~l~~La~~ 344 (354)
+ +|.|.++.++|.++
T Consensus 83 ~~~~~~G~~~~~~l~~f 99 (100)
T cd02999 83 PRVRYNGTRTLDSLAAF 99 (100)
T ss_pred ceeEecCCCCHHHHHhh
Confidence 4 79999999999876
No 17
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.16 E-value=1.1e-10 Score=96.34 Aligned_cols=73 Identities=15% Similarity=0.260 Sum_probs=55.2
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHHh--c--c--CceeECCCCCCCCCcchhHhhhh-CCCCccceeeE--CC----EEe
Q 018527 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKGTKIAKACSD-AKIEGFPTWVI--NG----QVL 332 (354)
Q Consensus 266 ~g~k~YgA~WCpHC~~qk~~fgk~A~--~--~--l~yVeC~~~g~~~~~~~~~lC~~-~~I~gyPTw~i--nG----~~y 332 (354)
.-+++|+|+|||||+++++.|.+.+. + . +..|||+.+ ..++|++ ++|++|||..+ +| ..|
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-------~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y 95 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-------QREFAKEELQLKSFPTILFFPKNSRQPIKY 95 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-------chhhHHhhcCCCcCCEEEEEcCCCCCceec
Confidence 33667889999999999999977542 1 1 346888863 1367875 89999999876 43 269
Q ss_pred eCC-CCHHHHHHHh
Q 018527 333 SGE-QDLSDLAKAS 345 (354)
Q Consensus 333 ~G~-r~l~~La~~s 345 (354)
.|. |+.++|.+|.
T Consensus 96 ~g~~~~~~~l~~f~ 109 (109)
T cd02993 96 PSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCHHHHHhhC
Confidence 995 9999998873
No 18
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.16 E-value=1.1e-10 Score=90.23 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=57.1
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHh---ccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeECCE-EeeCCCCHHH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGEQDLSD 340 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~---~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~-~y~G~r~l~~ 340 (354)
.+++|.++|||||+++++.+.+.+. .++. .||++. ..+++++++|+++||.++||+ ++.|.++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--------NPQKAMEYGIMAVPAIVINGDVEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--------CHHHHHHcCCccCCEEEECCEEEEecCCCHHH
Confidence 4678999999999999999987432 2244 566543 247889999999999999997 8899999999
Q ss_pred HHHHh
Q 018527 341 LAKAS 345 (354)
Q Consensus 341 La~~s 345 (354)
|.++.
T Consensus 74 l~~~l 78 (82)
T TIGR00411 74 LVEAI 78 (82)
T ss_pred HHHHH
Confidence 98765
No 19
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.15 E-value=1.2e-10 Score=93.42 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=56.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE----EeeCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLSGEQ 336 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~----~y~G~r 336 (354)
+.+|+|+||+||+++++.|.+-+.+ + +.++||+.+ .++|++++|+++||..+ +|+ +|.|.+
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~ 93 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--------QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGR 93 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--------HHHHHHCCCCccCEEEEECCCCcceeecCCCC
Confidence 5577799999999999999774422 2 347888753 48899999999999776 552 699999
Q ss_pred CHHHHHHHh
Q 018527 337 DLSDLAKAS 345 (354)
Q Consensus 337 ~l~~La~~s 345 (354)
+.++|.+|.
T Consensus 94 ~~~~l~~~~ 102 (103)
T cd03001 94 TAKAIVSAA 102 (103)
T ss_pred CHHHHHHHh
Confidence 999999874
No 20
>PHA02125 thioredoxin-like protein
Probab=99.10 E-value=4.1e-10 Score=87.60 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=52.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCE---EeeCC-CCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ---VLSGE-QDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~---~y~G~-r~l~~La~ 343 (354)
+++|+|+||+||+++++.+.+.+ ..+++.+.+. ..+++++++|+++||.. +|+ ++.|. +++.+|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---~~~~~vd~~~------~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---YTYVDVDTDE------GVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---heEEeeeCCC------CHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHH
Confidence 56889999999999999997643 2344443221 35889999999999987 775 57885 77899988
Q ss_pred HhC
Q 018527 344 ASG 346 (354)
Q Consensus 344 ~sg 346 (354)
..|
T Consensus 72 ~~~ 74 (75)
T PHA02125 72 KLG 74 (75)
T ss_pred HhC
Confidence 766
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.09 E-value=7.8e-10 Score=104.01 Aligned_cols=70 Identities=23% Similarity=0.417 Sum_probs=55.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
+++|+|+||+||+++++.|.+.+.+ . +..|||+.+ .++|++++|++|||..+ ||+ .+.|.++
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--------~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s 127 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--------LNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRS 127 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--------HHHHHHcCCCcCCEEEEEECCEEEEeeCCCCC
Confidence 5667799999999999999875422 1 346788753 58999999999999776 887 3568899
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 128 ~e~L~~fi 135 (224)
T PTZ00443 128 TEKLAAFA 135 (224)
T ss_pred HHHHHHHH
Confidence 99998873
No 22
>PHA02278 thioredoxin-like protein
Probab=99.09 E-value=7.1e-10 Score=92.20 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=64.3
Q ss_pred HHHHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE-
Q 018527 256 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (354)
Q Consensus 256 ~~~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i- 327 (354)
..+|.+.+++.+ ++.|.|+||++|+.++|.|.+.+.+ + +-+||.+.+..+ ..+++++++|++.||+.+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d----~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD----REKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc----cHHHHHHCCCccccEEEEE
Confidence 446666665554 5567799999999999999875432 1 446777654211 257899999999999887
Q ss_pred -CCE---EeeCCCCHHHHHHHh
Q 018527 328 -NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 -nG~---~y~G~r~l~~La~~s 345 (354)
||+ ++.|..+.++|.++-
T Consensus 80 k~G~~v~~~~G~~~~~~l~~~~ 101 (103)
T PHA02278 80 KDGQLVKKYEDQVTPMQLQELE 101 (103)
T ss_pred ECCEEEEEEeCCCCHHHHHhhh
Confidence 887 689999999998874
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.08 E-value=3.5e-10 Score=94.12 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=56.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc----c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQ 336 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~----~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r 336 (354)
+++|.|+||+||+++++.|.+.+.+ + +..|||+.+ .++|++++|++|||..+ ||+ ++.|.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--------~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~ 99 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--------RRLARKLGAHSVPAIVGIINGQVTFYHDSSF 99 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--------HHHHHHcCCccCCEEEEEECCEEEEEecCCC
Confidence 5577799999999999999764321 2 347888753 47899999999999776 887 578999
Q ss_pred CHHHHHHHh
Q 018527 337 DLSDLAKAS 345 (354)
Q Consensus 337 ~l~~La~~s 345 (354)
+.++|.++.
T Consensus 100 ~~~~l~~~i 108 (111)
T cd02963 100 TKQHVVDFV 108 (111)
T ss_pred CHHHHHHHH
Confidence 999998875
No 24
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.06 E-value=4e-10 Score=91.88 Aligned_cols=70 Identities=16% Similarity=0.373 Sum_probs=55.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc----c----CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--EeeCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK----Q----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 335 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~----~----l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--~y~G~ 335 (354)
+++|.|+|||||+++++.|.+.+.+ . +.++||+.+ .++|++++|+++||..+ +|. +|.|.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~ 90 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--------SSIASEFGVRGYPTIKLLKGDLAYNYRGP 90 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--------HhHHhhcCCccccEEEEEcCCCceeecCC
Confidence 5577799999999999999775422 1 236888753 48899999999999876 443 69999
Q ss_pred CCHHHHHHHh
Q 018527 336 QDLSDLAKAS 345 (354)
Q Consensus 336 r~l~~La~~s 345 (354)
++.++|.++.
T Consensus 91 ~~~~~l~~~~ 100 (104)
T cd03000 91 RTKDDIVEFA 100 (104)
T ss_pred CCHHHHHHHH
Confidence 9999999875
No 25
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.05 E-value=3.8e-10 Score=90.19 Aligned_cols=70 Identities=26% Similarity=0.422 Sum_probs=55.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-----cC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC-E---EeeC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-----QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSG 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-----~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG-~---~y~G 334 (354)
+.+|+|+||+||+++++.|.+.+.+ .+ -.+||+.+ ..++|++++|+++||+.+ +| + +|.|
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-------NKDLAKKYGVSGFPTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-------chhhHHhCCCCCcCEEEEEeCCCCCccccCC
Confidence 6688899999999999999775422 12 36888752 248899999999999887 44 3 6999
Q ss_pred CCCHHHHHHH
Q 018527 335 EQDLSDLAKA 344 (354)
Q Consensus 335 ~r~l~~La~~ 344 (354)
.++.++|.++
T Consensus 95 ~~~~~~l~~~ 104 (105)
T cd02998 95 GRDLEDLVKF 104 (105)
T ss_pred ccCHHHHHhh
Confidence 9999999886
No 26
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.04 E-value=5.4e-10 Score=89.33 Aligned_cols=68 Identities=26% Similarity=0.523 Sum_probs=54.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-----c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE-----Eee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VLS 333 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-----~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~-----~y~ 333 (354)
+++|.|+||+||+++++.|.+.+.. . +.+|||+.+ ++|.+.++++|||+.+ +|+ +|.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~ 92 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---------DVPSEFVVDGFPTILFFPAGDKSNPIKYE 92 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---------hhhhhccCCCCCEEEEEcCCCcCCceEcc
Confidence 5678899999999999999875421 1 246898752 5678899999999887 554 699
Q ss_pred CCCCHHHHHHH
Q 018527 334 GEQDLSDLAKA 344 (354)
Q Consensus 334 G~r~l~~La~~ 344 (354)
|.++.++|.++
T Consensus 93 g~~~~~~l~~f 103 (104)
T cd02995 93 GDRTLEDLIKF 103 (104)
T ss_pred CCcCHHHHHhh
Confidence 99999999886
No 27
>PTZ00102 disulphide isomerase; Provisional
Probab=99.03 E-value=1.1e-09 Score=110.83 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=59.0
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHHHh--c----c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--Eee
Q 018527 266 IGAKMYGAFWCSHCLEQKQMFGSEAV--K----Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLS 333 (354)
Q Consensus 266 ~g~k~YgA~WCpHC~~qk~~fgk~A~--~----~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--~y~ 333 (354)
.-+++|+|+||+||+++++.|.+.|. + + +..|||+.+ .++|++++|+||||.++ ||+ +|.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~y~ 122 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--------MELAQEFGVRGYPTIKFFNKGNPVNYS 122 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--------HHHHHhcCCCcccEEEEEECCceEEec
Confidence 34667779999999999999987541 1 1 347999864 48999999999999876 664 699
Q ss_pred CCCCHHHHHHHhCC
Q 018527 334 GEQDLSDLAKASGF 347 (354)
Q Consensus 334 G~r~l~~La~~sg~ 347 (354)
|.++.++|.++..-
T Consensus 123 g~~~~~~l~~~l~~ 136 (477)
T PTZ00102 123 GGRTADGIVSWIKK 136 (477)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999987643
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.00 E-value=1.6e-09 Score=86.77 Aligned_cols=71 Identities=31% Similarity=0.574 Sum_probs=55.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh--c---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV--K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 335 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~--~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 335 (354)
++.|.|+||++|+++++.+.+.+. + . +..|||+.+. ...+|++++|++|||.++ ||+ +|.|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 94 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE------HDALKEEYNVKGFPTFKYFENGKFVEKYEGE 94 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc------cHHHHHhCCCccccEEEEEeCCCeeEEeCCC
Confidence 567889999999999998876431 1 1 2357887531 358899999999999776 665 69999
Q ss_pred CCHHHHHHH
Q 018527 336 QDLSDLAKA 344 (354)
Q Consensus 336 r~l~~La~~ 344 (354)
++.++|.+|
T Consensus 95 ~~~~~l~~~ 103 (104)
T cd02997 95 RTAEDIIEF 103 (104)
T ss_pred CCHHHHHhh
Confidence 999999876
No 29
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.99 E-value=1.8e-09 Score=88.54 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=59.3
Q ss_pred HHHHHHhccc----CeEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE-
Q 018527 257 LSLAKHLHAI----GAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (354)
Q Consensus 257 ~~la~~L~~~----g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i- 327 (354)
.++.+++++. =++.|.|+||++|+.++|.|.+.+.+ .+. .||++.+. +..+++++++|+++||.++
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~-----~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND-----STMELCRREKIIEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh-----HHHHHHHHcCCCcCCEEEEE
Confidence 3455555442 25577799999999999999875432 333 46765432 1358999999999999776
Q ss_pred -CCE---EeeCCCCHHHHHHHhCC
Q 018527 328 -NGQ---VLSGEQDLSDLAKASGF 347 (354)
Q Consensus 328 -nG~---~y~G~r~l~~La~~sg~ 347 (354)
||+ ++.|.. .++|.+..-+
T Consensus 79 ~~G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 79 KDGEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred eCCeEEEEEeCCC-HHHHHHHHHh
Confidence 887 688954 5777765544
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.97 E-value=1.8e-09 Score=80.57 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=54.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
+++|+++|||+|+++++.+.+. .++|.+.+.+. +. ....++++..++.++||++++|+.+.|. +.++|.++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---~i~~~~vdi~~-~~-~~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---GIAFEEIDVEK-DS-AAREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---CCeEEEEeccC-CH-HHHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHHh
Confidence 5799999999999999999763 45554443322 11 1134578889999999999999998885 779998875
No 31
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.97 E-value=1.7e-09 Score=90.76 Aligned_cols=79 Identities=23% Similarity=0.430 Sum_probs=56.5
Q ss_pred HHHHhcccC---eEEEecCCCHHHHHHHHHHhHHHhc------c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE
Q 018527 259 LAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEAVK------Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (354)
Q Consensus 259 la~~L~~~g---~k~YgA~WCpHC~~qk~~fgk~A~~------~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i 327 (354)
+.+.+++.+ +++|.|+||++|+.+++.|.+.+.+ . +..|||+.+. ..++|++++|++|||+++
T Consensus 11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~------~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE------NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh------hHHHHHhCCCCCCCEEEE
Confidence 334444433 4567799999999999999875421 1 3468997542 358899999999999887
Q ss_pred --C-------CEEeeCC-CCHHHHHH
Q 018527 328 --N-------GQVLSGE-QDLSDLAK 343 (354)
Q Consensus 328 --n-------G~~y~G~-r~l~~La~ 343 (354)
+ |.+|.|. |..+++.+
T Consensus 85 f~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 85 FPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred ECCCCccCCCCCcccCCccCHHHHHH
Confidence 3 3467777 88888754
No 32
>PRK09381 trxA thioredoxin; Provisional
Probab=98.93 E-value=3.3e-09 Score=86.76 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=56.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-----cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-----~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
+.+|.++|||+|+.+++.|.+.+.+ .+..|||+.+ ..++++++|+++||+.+ ||+ ++.|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~ 96 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--------PGTAPKYGIRGIPTLLLFKNGEVAATKVGALS 96 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--------hhHHHhCCCCcCCEEEEEeCCeEEEEecCCCC
Confidence 5577799999999999999875422 2457898753 47789999999999887 786 5789999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 97 ~~~l~~~i 104 (109)
T PRK09381 97 KGQLKEFL 104 (109)
T ss_pred HHHHHHHH
Confidence 99998764
No 33
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.92 E-value=6.1e-10 Score=108.32 Aligned_cols=72 Identities=15% Similarity=0.367 Sum_probs=56.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHH--hc------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--EeeCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEA--VK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGE 335 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A--~~------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--~y~G~ 335 (354)
.+-|+||||.|||++.|.|.+-- ++ ++...||+. .+.++.+.+|+||||.+. ||. .|.|.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~--------f~aiAnefgiqGYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR--------FPAIANEFGIQGYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc--------chhhHhhhccCCCceEEEecCCeeeecCCC
Confidence 44455999999999999996521 22 244678874 578999999999999887 554 69999
Q ss_pred CCHHHHHHHhCC
Q 018527 336 QDLSDLAKASGF 347 (354)
Q Consensus 336 r~l~~La~~sg~ 347 (354)
|+.|+|.++.-.
T Consensus 119 R~Kd~iieFAhR 130 (468)
T KOG4277|consen 119 REKDAIIEFAHR 130 (468)
T ss_pred ccHHHHHHHHHh
Confidence 999999987643
No 34
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.91 E-value=6.1e-09 Score=79.48 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=58.0
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHHh--ccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC
Q 018527 265 AIGAKMYGAFWCSHCLEQKQMFGSEAV--KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 335 (354)
Q Consensus 265 ~~g~k~YgA~WCpHC~~qk~~fgk~A~--~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 335 (354)
..-+.+|+++||++|+++++.+.+.+. .++. +|||+.+ .+++++++++++||+++ +|+ .+.|.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--------PELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--------hhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 344778999999999999999987433 2333 6777653 47899999999999988 776 68999
Q ss_pred CCHHHHHHHh
Q 018527 336 QDLSDLAKAS 345 (354)
Q Consensus 336 r~l~~La~~s 345 (354)
.+.++|.++.
T Consensus 83 ~~~~~l~~~i 92 (93)
T cd02947 83 DPKEELEEFL 92 (93)
T ss_pred CCHHHHHHHh
Confidence 9989998764
No 35
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.90 E-value=7.7e-09 Score=84.54 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=56.0
Q ss_pred HHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHh--c--c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--
Q 018527 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAV--K--Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 327 (354)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~--~--~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i-- 327 (354)
++.+++++.+ +++|.|+||+||+.+.+.|.+-+. + . +..||++ + .+++++++|+++||+.+
T Consensus 9 ~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--------~~~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 9 EWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--------IDTLKRYRGKCEPTFLFYK 79 (102)
T ss_pred HHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--------HHHHHHcCCCcCcEEEEEE
Confidence 4444554444 457779999999999999976432 1 1 3456666 2 36799999999999887
Q ss_pred CCE---EeeCCCCHHHHHHHh
Q 018527 328 NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 nG~---~y~G~r~l~~La~~s 345 (354)
||+ +..|. +.++|.++.
T Consensus 80 ~g~~~~~~~G~-~~~~~~~~i 99 (102)
T cd02948 80 NGELVAVIRGA-NAPLLNKTI 99 (102)
T ss_pred CCEEEEEEecC-ChHHHHHHH
Confidence 886 57775 778887764
No 36
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.89 E-value=4.6e-09 Score=89.95 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=59.5
Q ss_pred HHHHHhcccC---eEEEecCCCH--HHH--HHHHHHhHHHhcc-------CceeECCCCCCCCCcchhHhhhhCCCCccc
Q 018527 258 SLAKHLHAIG---AKMYGAFWCS--HCL--EQKQMFGSEAVKQ-------LNYVECFPDGYRKGTKIAKACSDAKIEGFP 323 (354)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WCp--HC~--~qk~~fgk~A~~~-------l~yVeC~~~g~~~~~~~~~lC~~~~I~gyP 323 (354)
.|.+.+++.. +++|.|+||+ ||+ .+.|.+.+.|.+. +..|||+.+ .++|+++||+|+|
T Consensus 18 nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--------~~La~~~~I~~iP 89 (120)
T cd03065 18 NYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--------AKVAKKLGLDEED 89 (120)
T ss_pred hHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--------HHHHHHcCCcccc
Confidence 4445555555 6688888884 799 6666665544332 346888753 5999999999999
Q ss_pred eeeE--CCE--EeeCCCCHHHHHHHh
Q 018527 324 TWVI--NGQ--VLSGEQDLSDLAKAS 345 (354)
Q Consensus 324 Tw~i--nG~--~y~G~r~l~~La~~s 345 (354)
|.++ ||+ .|.|.++.++|.++.
T Consensus 90 Tl~lfk~G~~v~~~G~~~~~~l~~~l 115 (120)
T cd03065 90 SIYVFKDDEVIEYDGEFAADTLVEFL 115 (120)
T ss_pred EEEEEECCEEEEeeCCCCHHHHHHHH
Confidence 9876 897 599999999999875
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.87 E-value=5.6e-09 Score=82.94 Aligned_cols=70 Identities=24% Similarity=0.458 Sum_probs=55.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHH--hc---cC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEA--VK---QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 335 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A--~~---~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 335 (354)
+.+|.++||++|+++++.|.+.+ .+ .+ ..+||+.+ .++|++++|+++||+.+ +|+ +|.|.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--------KDLASRFGVSGFPTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--------HHHHHhCCCCcCCEEEEecCCCcceeecCC
Confidence 66888999999999999887643 22 23 35788653 58999999999999876 454 69999
Q ss_pred CCHHHHHHHh
Q 018527 336 QDLSDLAKAS 345 (354)
Q Consensus 336 r~l~~La~~s 345 (354)
++.++|.++.
T Consensus 89 ~~~~~l~~~i 98 (102)
T TIGR01126 89 RDLEAIVEFV 98 (102)
T ss_pred CCHHHHHHHH
Confidence 9999998764
No 38
>PRK10996 thioredoxin 2; Provisional
Probab=98.84 E-value=1.9e-08 Score=87.27 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=59.3
Q ss_pred HHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc---cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--C
Q 018527 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (354)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~---~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--n 328 (354)
++.+.+++.. ++.|+|+||++|+++++.|.+.+.+ .+. .||++. ..+++++++|+++||..+ |
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--------~~~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--------ERELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--------CHHHHHhcCCCccCEEEEEEC
Confidence 3444444333 5577799999999999999774322 243 466653 258899999999999887 8
Q ss_pred CE---EeeCCCCHHHHHHHh
Q 018527 329 GQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 329 G~---~y~G~r~l~~La~~s 345 (354)
|+ ++.|..+.++|.++.
T Consensus 116 G~~v~~~~G~~~~e~l~~~l 135 (139)
T PRK10996 116 GQVVDMLNGAVPKAPFDSWL 135 (139)
T ss_pred CEEEEEEcCCCCHHHHHHHH
Confidence 87 589999999998875
No 39
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.83 E-value=1.4e-08 Score=79.19 Aligned_cols=80 Identities=23% Similarity=0.481 Sum_probs=60.5
Q ss_pred HHHHHhccc--CeEEEecCCCHHHHHHHHHHhHHH--h---ccC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE-
Q 018527 258 SLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEA--V---KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (354)
Q Consensus 258 ~la~~L~~~--g~k~YgA~WCpHC~~qk~~fgk~A--~---~~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i- 327 (354)
.+.+.+++. -+.+|.++||++|+++++.|.+.+ . ..+ ..|||+.+ .++|++++|+++||..+
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--------NDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--------HHHHHhCCCCCCCEEEEE
Confidence 455555555 466888999999999999997743 2 223 35777752 58999999999999876
Q ss_pred -CC-E---EeeCCCCHHHHHHHh
Q 018527 328 -NG-Q---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 -nG-~---~y~G~r~l~~La~~s 345 (354)
+| + +|.|.++.+++.++.
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 44 3 699999999998863
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.83 E-value=1.8e-08 Score=81.24 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=54.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHH--h-ccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEA--V-KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A--~-~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
+++|.|+||++|+++++.+.+-+ . .++. .||++. +.++.++++|.++||..+ ||+ ++.|.++
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--------~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--------DQEIAEAAGIMGTPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--------CHHHHHHCCCeeccEEEEEECCeEEEEEeCCcc
Confidence 66888999999999999986632 1 2343 455543 358899999999999887 776 6899999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 89 ~~~~~~~l 96 (97)
T cd02949 89 KSEYREFI 96 (97)
T ss_pred HHHHHHhh
Confidence 99998764
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.83 E-value=1.2e-08 Score=82.86 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=57.5
Q ss_pred HHHHhcccC--eEEEecCCCHHHHHHHHHHh---HHH--hc-cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE-
Q 018527 259 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFG---SEA--VK-QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI- 327 (354)
Q Consensus 259 la~~L~~~g--~k~YgA~WCpHC~~qk~~fg---k~A--~~-~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i- 327 (354)
+.+.+++.. +++|+|+||++|+++++.+. +.+ .+ ++. .||++.+.. ...+++++++|+++||..+
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP----EITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH----HHHHHHHHcCCCCCCEEEEE
Confidence 444444444 56888999999999997662 211 12 343 567654321 1358999999999999776
Q ss_pred C---CE---EeeCCCCHHHHHHHh
Q 018527 328 N---GQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 n---G~---~y~G~r~l~~La~~s 345 (354)
+ |+ ++.|.++.++|.++.
T Consensus 80 ~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 80 GPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCCcccccccCHHHHHHHh
Confidence 3 54 689999999998864
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.82 E-value=1.6e-08 Score=79.81 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHH--h-ccC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEA--V-KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A--~-~~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
+.+|.++||++|+++++.|.+.+ . .++ -+|||+.+ .+++++++|+++||.++ +|+ ++.|.++
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--------PDIAAKYGIRSIPTLLLFKNGKEVDRSVGALP 89 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--------HHHHHHcCCCcCCEEEEEeCCcEeeeecCCCC
Confidence 55777999999999999997643 1 223 36888753 47899999999999887 775 5889999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 90 ~~~l~~~l 97 (101)
T TIGR01068 90 KAALKQLI 97 (101)
T ss_pred HHHHHHHH
Confidence 99998875
No 43
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.79 E-value=2.1e-08 Score=84.11 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=57.5
Q ss_pred HHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC-
Q 018527 259 LAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG- 329 (354)
Q Consensus 259 la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG- 329 (354)
+.++|+... +++|+|+|||+|+.+++.+.+.+.. ++. .||.+. ..++.++++|++.||..+ ||
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~--------~~~l~~~~~v~~vPt~~i~~~g~ 86 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE--------DKEKAEKYGVERVPTTIFLQDGG 86 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc--------CHHHHHHcCCCcCCEEEEEeCCe
Confidence 666665533 3466899999999999999875432 233 455543 358899999999999888 33
Q ss_pred ---E-EeeCCCCHHHHHHHh
Q 018527 330 ---Q-VLSGEQDLSDLAKAS 345 (354)
Q Consensus 330 ---~-~y~G~r~l~~La~~s 345 (354)
+ ++.|..+-++|.++.
T Consensus 87 ~~~~~~~~G~~~~~el~~~i 106 (113)
T cd02975 87 KDGGIRYYGLPAGYEFASLI 106 (113)
T ss_pred ecceEEEEecCchHHHHHHH
Confidence 2 688988888887764
No 44
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.79 E-value=1.4e-08 Score=104.53 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=55.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE----Eee-C
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS-G 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~----~y~-G 334 (354)
+++|+|+||+||+.+++.|.+.|.+ .+..|||+.+. ....+++++|++|||.++ ||+ .|. |
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~------~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g 448 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ------KEFAKQELQLGSFPTILFFPKHSSRPIKYPSE 448 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc------cHHHHHHcCCCccceEEEEECCCCCceeCCCC
Confidence 5677799999999999999876532 13468998642 123357899999999876 653 697 5
Q ss_pred CCCHHHHHHHhC
Q 018527 335 EQDLSDLAKASG 346 (354)
Q Consensus 335 ~r~l~~La~~sg 346 (354)
.|+++.|.+|.+
T Consensus 449 ~R~~e~L~~Fv~ 460 (463)
T TIGR00424 449 KRDVDSLMSFVN 460 (463)
T ss_pred CCCHHHHHHHHH
Confidence 899999998864
No 45
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.78 E-value=2.6e-08 Score=79.18 Aligned_cols=71 Identities=25% Similarity=0.435 Sum_probs=51.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCCHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLS 339 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~l~ 339 (354)
+++|+|+||++|+++++.|.+.+.+ .+.++.++.+. ..+++++++|+++||+.+ ||+ ++.|. +.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~ 90 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE------LPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPK 90 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc------CHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHH
Confidence 5577799999999999999875533 34444433221 358899999999999887 786 46775 568
Q ss_pred HHHHHh
Q 018527 340 DLAKAS 345 (354)
Q Consensus 340 ~La~~s 345 (354)
+|.+..
T Consensus 91 ~l~~~~ 96 (97)
T cd02984 91 ELAKKV 96 (97)
T ss_pred HHHHhh
Confidence 887753
No 46
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.78 E-value=2.2e-08 Score=87.27 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=54.5
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHh---ccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE---CCE---EeeCC
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAV---KQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VLSGE 335 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~---~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i---nG~---~y~G~ 335 (354)
=+++|.|+||++|+++++.|.+.+. .++. .|+.+.+. ..+++++++|+++||.++ ||+ ++.|.
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~------~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK------WLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc------cHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 3667889999999999999987532 2233 45554321 247899999999999776 576 68999
Q ss_pred CCHHHHHHHhC
Q 018527 336 QDLSDLAKASG 346 (354)
Q Consensus 336 r~l~~La~~sg 346 (354)
.+.++|.++.-
T Consensus 97 ~~~~~l~~~l~ 107 (142)
T cd02950 97 QPKQVLAQNLD 107 (142)
T ss_pred CCHHHHHHHHH
Confidence 99888876543
No 47
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.77 E-value=1.2e-08 Score=76.59 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=45.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHh--ccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCE-EeeC
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG 334 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~--~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~-~y~G 334 (354)
.+++|.++|||+|+++++.+.+.+. .++.+.+.+.+. .+++.+++||++.||..+||+ ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~------~~~l~~~~~i~~vPti~i~~~~~~~g 66 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE------FPDLADEYGVMSVPAIVINGKVEFVG 66 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc------CHhHHHHcCCcccCEEEECCEEEEec
Confidence 3678999999999999999976432 235443333221 246889999999999999997 4555
No 48
>PLN02309 5'-adenylylsulfate reductase
Probab=98.77 E-value=1.9e-08 Score=103.53 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=55.8
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhc----c--CceeECCCCCCCCCcchhHhhh-hCCCCccceeeE--CCE----Eee
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVK----Q--LNYVECFPDGYRKGTKIAKACS-DAKIEGFPTWVI--NGQ----VLS 333 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~----~--l~yVeC~~~g~~~~~~~~~lC~-~~~I~gyPTw~i--nG~----~y~ 333 (354)
-+++|+||||+||+++++.|.+.|.+ . +..|||+.+ +.++|+ +++|++|||.++ +|. +|.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-------~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~ 440 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-------QKEFAKQELQLGSFPTILLFPKNSSRPIKYP 440 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-------chHHHHhhCCCceeeEEEEEeCCCCCeeecC
Confidence 36677899999999999999876532 1 346888732 247786 589999999877 553 787
Q ss_pred C-CCCHHHHHHHhC
Q 018527 334 G-EQDLSDLAKASG 346 (354)
Q Consensus 334 G-~r~l~~La~~sg 346 (354)
| .|+.+.|.+|..
T Consensus 441 ~~~R~~~~L~~fv~ 454 (457)
T PLN02309 441 SEKRDVDSLLSFVN 454 (457)
T ss_pred CCCcCHHHHHHHHH
Confidence 5 699999998863
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.9e-09 Score=106.66 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=54.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh--cc-----CceeECCCCCCCCCcchhHhhhhCCCCccceeeE---CCE----Eee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV--KQ-----LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VLS 333 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~--~~-----l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i---nG~----~y~ 333 (354)
.+.|+||||+||++++|.|.+.|- +. |.++|-+.|. -...+|+||||+.. +++ .|+
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd----------~~~~~~~~fPTI~~~pag~k~~pv~y~ 457 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND----------VPSLKVDGFPTILFFPAGHKSNPVIYN 457 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc----------CccccccccceEEEecCCCCCCCcccC
Confidence 345559999999999999988653 22 4577777653 12258999999777 342 699
Q ss_pred CCCCHHHHHHHhCCCCC
Q 018527 334 GEQDLSDLAKASGFPEM 350 (354)
Q Consensus 334 G~r~l~~La~~sg~~~~ 350 (354)
|.|++++|.++..-.|.
T Consensus 458 g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 458 GDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCcchHHHHhhhccCCC
Confidence 99999999998876554
No 50
>PTZ00051 thioredoxin; Provisional
Probab=98.77 E-value=3.8e-08 Score=78.53 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=55.2
Q ss_pred HHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC
Q 018527 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 329 (354)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG 329 (354)
++.+.+++.. +.+|+|+||++|+++++.|.+.+.+ .+. .|||+. ..+++++++|+++||..+ ||
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~--------~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE--------LSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc--------hHHHHHHCCCceeeEEEEEeCC
Confidence 3444444433 5578899999999999999875432 233 466653 358899999999999777 77
Q ss_pred E---EeeCCCCHHHHHH
Q 018527 330 Q---VLSGEQDLSDLAK 343 (354)
Q Consensus 330 ~---~y~G~r~l~~La~ 343 (354)
+ ++.|. +.++|.+
T Consensus 82 ~~~~~~~G~-~~~~~~~ 97 (98)
T PTZ00051 82 SVVDTLLGA-NDEALKQ 97 (98)
T ss_pred eEEEEEeCC-CHHHhhc
Confidence 6 58886 5577754
No 51
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.76 E-value=2.2e-08 Score=99.99 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=57.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE----Eee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----VLS 333 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~----~y~ 333 (354)
+++|.|+||+||+++++.|.+.|.+ .+..|||+.+ .++|++++|++|||..+ +|+ +|.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~ 93 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--------KDLAQKYGVSGYPTLKIFRNGEDSVSDYN 93 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--------HHHHHhCCCccccEEEEEeCCccceeEec
Confidence 5567799999999999999764321 1347899854 48999999999999876 565 599
Q ss_pred CCCCHHHHHHHhCC
Q 018527 334 GEQDLSDLAKASGF 347 (354)
Q Consensus 334 G~r~l~~La~~sg~ 347 (354)
|.++.++|.++...
T Consensus 94 g~~~~~~l~~~i~~ 107 (462)
T TIGR01130 94 GPRDADGIVKYMKK 107 (462)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999887744
No 52
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.73 E-value=6.1e-08 Score=86.14 Aligned_cols=71 Identities=11% Similarity=0.234 Sum_probs=53.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc----cC--ceeECCCCCCCCCcchhHhhhhCCCCc------cceeeE--CCE---
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK----QL--NYVECFPDGYRKGTKIAKACSDAKIEG------FPTWVI--NGQ--- 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~----~l--~yVeC~~~g~~~~~~~~~lC~~~~I~g------yPTw~i--nG~--- 330 (354)
+++|.|+|||||+++++.|.+.+.+ ++ -.|||+.+ .++|++++|++ +||.++ ||+
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------PNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--------HHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6678899999999999999875422 23 46888753 48899999988 999887 887
Q ss_pred EeeC-----------CCCHHHHHHHhC
Q 018527 331 VLSG-----------EQDLSDLAKASG 346 (354)
Q Consensus 331 ~y~G-----------~r~l~~La~~sg 346 (354)
++.| .-+.|++.+...
T Consensus 123 r~~G~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 123 RRPYYNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred EEeccccCccccccccccHHHHHHhcc
Confidence 4664 456677766544
No 53
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.72 E-value=1e-06 Score=92.98 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=53.8
Q ss_pred eEEEecCCCHHHHHHHHH-HhHH----HhccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE---CCE-----Ee
Q 018527 268 AKMYGAFWCSHCLEQKQM-FGSE----AVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ-----VL 332 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~-fgk~----A~~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i---nG~-----~y 332 (354)
++.|+|+||++|+++++. |..+ +.+++. .||.+.+. + +..++.++++|+|+||..+ ||+ ++
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~--~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~ 553 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--A--EDVALLKHYNVLGLPTILFFDAQGQEIPDARV 553 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--h--hhHHHHHHcCCCCCCEEEEECCCCCCcccccc
Confidence 556779999999999875 4322 223333 46776432 1 2468999999999999776 565 46
Q ss_pred eCCCCHHHHHHHhC
Q 018527 333 SGEQDLSDLAKASG 346 (354)
Q Consensus 333 ~G~r~l~~La~~sg 346 (354)
.|..+.+++.++..
T Consensus 554 ~G~~~~~~f~~~L~ 567 (571)
T PRK00293 554 TGFMDAAAFAAHLR 567 (571)
T ss_pred cCCCCHHHHHHHHH
Confidence 79999999887653
No 54
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.70 E-value=5.1e-08 Score=76.28 Aligned_cols=69 Identities=12% Similarity=0.297 Sum_probs=51.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---cCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCE-EeeCC-CCHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSGE-QDLSDLA 342 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~-~y~G~-r~l~~La 342 (354)
+.|| |+|||+|+.+++.|.+.+.+ ++..++.+. .+...+++|.+.||..+||+ .++|. .+.++|.
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---------~~~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD---------MNEILEAGVTATPGVAVDGELVIMGKIPSKEEIK 72 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---------HHHHHHcCCCcCCEEEECCEEEEEeccCCHHHHH
Confidence 5677 79999999999999875432 233444431 24478899999999999997 57885 4668998
Q ss_pred HHhC
Q 018527 343 KASG 346 (354)
Q Consensus 343 ~~sg 346 (354)
++.+
T Consensus 73 ~~l~ 76 (76)
T TIGR00412 73 EILK 76 (76)
T ss_pred HHhC
Confidence 8764
No 55
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.8e-08 Score=100.61 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=65.0
Q ss_pred HHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHh--cc---CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--C
Q 018527 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--KQ---LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~--~~---l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--n 328 (354)
...+...-++..+++|.||||+||+++.++|.+.+. +. +.-|||+.+ .++|++++|+||||..+ +
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--------~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--------KDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--------HHHHHhcCCccCcEEEEEcC
Confidence 334455556777888889999999999999997432 22 456888864 58999999999999887 5
Q ss_pred C-E--EeeCCCCHHHHHHHhC
Q 018527 329 G-Q--VLSGEQDLSDLAKASG 346 (354)
Q Consensus 329 G-~--~y~G~r~l~~La~~sg 346 (354)
| + .|+|.++.++++++.-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~ 131 (383)
T KOG0191|consen 111 GKKPIDYSGPRNAESLAEFLI 131 (383)
T ss_pred CCceeeccCcccHHHHHHHHH
Confidence 5 2 6999999999998754
No 56
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.69 E-value=3.2e-08 Score=84.21 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=43.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~ 330 (354)
++.|+|+|||+|+.++|.|.+.|.+ .+. +||.+.+ .++.++++|++.||..+ ||+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--------~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--------PDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--------HHHHHHcCCCCCCEEEEEECCE
Confidence 5568899999999999999886533 233 5666542 58999999999999877 886
No 57
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.68 E-value=3.3e-08 Score=76.56 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=53.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-cCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~ 343 (354)
+++|+++|||+|++.++++.+.... ...++|.+.+.... .-+..+-+..++.++|+..+||+...|..++.++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~-~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGS-EIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChH-HHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 4689999999999999999885421 15578877643111 111235555799999999999998888766665543
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=98.68 E-value=3.2e-08 Score=100.15 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=57.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC-E---EeeC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG-Q---VLSG 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG-~---~y~G 334 (354)
+++|.|+||+||+++++.|.+.|.. .+..|||+.+ ...|++++|++|||..+ +| + +|.|
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--------~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--------ETPLEEFSWSAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--------ccchhcCCCcccCeEEEEECCCcceeEecC
Confidence 5577799999999999999775421 1446898764 25699999999999776 44 3 6899
Q ss_pred CCCHHHHHHHhCCCC
Q 018527 335 EQDLSDLAKASGFPE 349 (354)
Q Consensus 335 ~r~l~~La~~sg~~~ 349 (354)
.++.++|.++..-..
T Consensus 451 ~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 451 ERTVEGFKEFVNKHA 465 (477)
T ss_pred cCCHHHHHHHHHHcC
Confidence 999999998875543
No 59
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.68 E-value=5.1e-08 Score=82.63 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=55.3
Q ss_pred eEEEecCC--CHHHHHHHHHHhHHHhc---cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC
Q 018527 268 AKMYGAFW--CSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE 335 (354)
Q Consensus 268 ~k~YgA~W--CpHC~~qk~~fgk~A~~---~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~ 335 (354)
+.+|+|.| ||+|++++|.|.+.+.+ .+. .||++.+ .+++.+++|++.||..+ ||+ ++.|.
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--------~~la~~f~V~sIPTli~fkdGk~v~~~~G~ 102 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--------QALAARFGVLRTPALLFFRDGRYVGVLAGI 102 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--------HHHHHHcCCCcCCEEEEEECCEEEEEEeCc
Confidence 66899997 99999999999875532 233 6777653 48999999999999887 897 57999
Q ss_pred CCHHHHHH
Q 018527 336 QDLSDLAK 343 (354)
Q Consensus 336 r~l~~La~ 343 (354)
++.++|.+
T Consensus 103 ~~~~e~~~ 110 (111)
T cd02965 103 RDWDEYVA 110 (111)
T ss_pred cCHHHHhh
Confidence 99999864
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.66 E-value=1.2e-07 Score=79.60 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=56.9
Q ss_pred HHHHHhccc---CeEEEecCCCHHHHHHHHHHhH------HHhccCc--eeECCCCCC-----CCCcchhHhhhhCCCCc
Q 018527 258 SLAKHLHAI---GAKMYGAFWCSHCLEQKQMFGS------EAVKQLN--YVECFPDGY-----RKGTKIAKACSDAKIEG 321 (354)
Q Consensus 258 ~la~~L~~~---g~k~YgA~WCpHC~~qk~~fgk------~A~~~l~--yVeC~~~g~-----~~~~~~~~lC~~~~I~g 321 (354)
++++.+++. =+++|+|+|||||+++++.+.+ ...+.+. +|+.+.+.. ....+..+++.+++|++
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 444555555 3668899999999999986631 1112333 344432210 00012368899999999
Q ss_pred cceeeE---C-CE---EeeCCCCHHHHHHHh
Q 018527 322 FPTWVI---N-GQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 322 yPTw~i---n-G~---~y~G~r~l~~La~~s 345 (354)
+||.++ + |+ ++.|..+.+++.++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l 115 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYL 115 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHH
Confidence 999776 4 55 689999988887764
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.65 E-value=1.2e-07 Score=80.90 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=58.7
Q ss_pred HHHHHhcc--cCeEEEecCCCHHHHHHHHHHhHHHhc---cCceeECCCCCCCCCc---chhHhhhhC----CCCcccee
Q 018527 258 SLAKHLHA--IGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGT---KIAKACSDA----KIEGFPTW 325 (354)
Q Consensus 258 ~la~~L~~--~g~k~YgA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g~~~~~---~~~~lC~~~----~I~gyPTw 325 (354)
+|.+.+++ ..+++||++|||+|++++|.+.+.+.+ .+-|||-+.++...-. ...++.+++ +|.+.||.
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~ 94 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF 94 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence 34444443 458899999999999999999875432 2558888754311100 123455554 56679998
Q ss_pred eE--CCE---EeeC-CCCHHHHHHHh
Q 018527 326 VI--NGQ---VLSG-EQDLSDLAKAS 345 (354)
Q Consensus 326 ~i--nG~---~y~G-~r~l~~La~~s 345 (354)
.+ ||+ +..| ..+.++|.++.
T Consensus 95 v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 95 VHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred EEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 87 886 5778 45699998764
No 62
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.63 E-value=1e-07 Score=88.10 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=56.0
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHHhc--cCceeECCCCCCCCCcchhHhhhhCCCCccceeeEC--CEEeeCCCCHHH
Q 018527 265 AIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN--GQVLSGEQDLSD 340 (354)
Q Consensus 265 ~~g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in--G~~y~G~r~l~~ 340 (354)
..-+++|.|+|||||+.+++.+.+-+.+ ++.++..+.+. ..+++++++|+++||..++ |+++.|..+.++
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~------~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~ 207 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE------NPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQ 207 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC------CHHHHHHhCCccCCEEEEecCCEEEECCCCHHH
Confidence 3446678899999999999988775432 24433333321 3588999999999999984 556999999999
Q ss_pred HHHHh
Q 018527 341 LAKAS 345 (354)
Q Consensus 341 La~~s 345 (354)
|.++.
T Consensus 208 l~~~l 212 (215)
T TIGR02187 208 FLEYI 212 (215)
T ss_pred HHHHH
Confidence 98764
No 63
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.9e-08 Score=102.26 Aligned_cols=66 Identities=27% Similarity=0.504 Sum_probs=50.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--------cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE------C---CE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--------QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI------N---GQ 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--------~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i------n---G~ 330 (354)
++.|.+.||+||++.+|.|.+-|.+ ++.-|||+.+. | .++|++++|.+|||... | |+
T Consensus 61 lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N-----~~lCRef~V~~~Ptlryf~~~~~~~~~G~ 134 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-N-----VKLCREFSVSGYPTLRYFPPDSQNKTDGS 134 (606)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-h-----hhhHhhcCCCCCceeeecCCccccCcCCC
Confidence 3445599999999999999986532 25679999653 4 48999999999999887 3 67
Q ss_pred EeeCCCCHH
Q 018527 331 VLSGEQDLS 339 (354)
Q Consensus 331 ~y~G~r~l~ 339 (354)
.++|....+
T Consensus 135 ~~~~~~~~~ 143 (606)
T KOG1731|consen 135 DVSGPVIPS 143 (606)
T ss_pred cccCCcchh
Confidence 788844333
No 64
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.61 E-value=1.3e-07 Score=76.55 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=58.8
Q ss_pred HHHHHhccc-CeEEEecCCCHHHHHHHHHHhHHHhc--cCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCE-Eee
Q 018527 258 SLAKHLHAI-GAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLS 333 (354)
Q Consensus 258 ~la~~L~~~-g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~-~y~ 333 (354)
+.++.|++. .++.|.++|||+|...++++.+.+.. ++.+..-+.+. ..++.++++|.+.||..+||+ .+.
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~------~~e~a~~~~V~~vPt~vidG~~~~~ 78 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL------FQDEVEERGIMSVPAIFLNGELFGF 78 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh------CHHHHHHcCCccCCEEEECCEEEEe
Confidence 344455554 78899999999999999999875432 35443322221 357899999999999999998 588
Q ss_pred CCCCHHHHHH
Q 018527 334 GEQDLSDLAK 343 (354)
Q Consensus 334 G~r~l~~La~ 343 (354)
|..+.+++..
T Consensus 79 G~~~~~e~~~ 88 (89)
T cd03026 79 GRMTLEEILA 88 (89)
T ss_pred CCCCHHHHhh
Confidence 9888888753
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.61 E-value=1.1e-07 Score=87.92 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=55.3
Q ss_pred ccCeEEEec---CCCHHHHHHHHHHhHHHhc--cC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE----E
Q 018527 265 AIGAKMYGA---FWCSHCLEQKQMFGSEAVK--QL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 331 (354)
Q Consensus 265 ~~g~k~YgA---~WCpHC~~qk~~fgk~A~~--~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~----~ 331 (354)
...+++|.+ +|||||+.+++.+.+.+.+ ++ ..|+++.+. ..+++++++|+++||..+ ||+ +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~------~~~l~~~~~V~~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE------DKEEAEKYGVERVPTTIILEEGKDGGIR 93 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc------cHHHHHHcCCCccCEEEEEeCCeeeEEE
Confidence 444667767 9999999999999875432 23 367776432 368999999999999887 553 6
Q ss_pred eeCCCCHHHHHHH
Q 018527 332 LSGEQDLSDLAKA 344 (354)
Q Consensus 332 y~G~r~l~~La~~ 344 (354)
+.|..+.++|.++
T Consensus 94 ~~G~~~~~~l~~~ 106 (215)
T TIGR02187 94 YTGIPAGYEFAAL 106 (215)
T ss_pred EeecCCHHHHHHH
Confidence 8899888777444
No 66
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.59 E-value=8.1e-08 Score=78.45 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=47.9
Q ss_pred CeEEEecCCCHHHHHHHHHHhHH-H-hc----cCc--eeECCCCCC------------CCCcchhHhhhhCCCCccceee
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSE-A-VK----QLN--YVECFPDGY------------RKGTKIAKACSDAKIEGFPTWV 326 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~-A-~~----~l~--yVeC~~~g~------------~~~~~~~~lC~~~~I~gyPTw~ 326 (354)
-+.+|.++|||+|+++.+...+. + .. .+. +++.+.+.. +-.....++.+++||+|+||+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 36788899999999997766541 1 11 232 344432210 0001135789999999999988
Q ss_pred E---CCE---EeeCCCCHHHHHHHh
Q 018527 327 I---NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 327 i---nG~---~y~G~r~l~~La~~s 345 (354)
+ ||+ ++.|-.+.++|.++.
T Consensus 88 ~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEcCCCCEEEEecCCCCHHHHHhhC
Confidence 8 477 789999999998763
No 67
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.55 E-value=9.2e-08 Score=79.55 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~ 337 (354)
++.|.|+||++|+.+++.|.+.|.+ .+. .||++. . +++++++|+++||..+ ||+ ++.|.++
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~--------~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK--------A-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh--------h-HHHHhcCCCcCCEEEEEECCEEEEEEecHHH
Confidence 4567799999999999999875532 233 455542 3 7899999999999877 887 4566443
No 68
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.54 E-value=3.1e-07 Score=77.06 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=47.2
Q ss_pred HHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC
Q 018527 258 SLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG 329 (354)
Q Consensus 258 ~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG 329 (354)
++.+.+++.+ ++.|+|+||++|+.+++.+.+.+.+ .+. +||.+. ..++.++++|++.||..+ ||
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~--------~~~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK--------APFLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEccc--------CHHHHHHCCCccCCEEEEEECC
Confidence 4444554444 4467799999999999999875432 233 566554 357899999999999876 88
Q ss_pred E
Q 018527 330 Q 330 (354)
Q Consensus 330 ~ 330 (354)
+
T Consensus 86 ~ 86 (113)
T cd02989 86 K 86 (113)
T ss_pred E
Confidence 6
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.47 E-value=5.3e-07 Score=67.08 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=49.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~ 344 (354)
+++|+++|||+|+++++++.+. .-....++.+.+. . ...++.+..++.++|+++++|+...|.. .++|.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-~i~~~~~~i~~~~--~--~~~~~~~~~~~~~vP~i~~~~~~i~g~~-~~~l~~~ 72 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-GIPFEEVDVDEDP--E--ALEELKKLNGYRSVPVVVIGDEHLSGFR-PDKLRAL 72 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-CCCeEEEeCCCCH--H--HHHHHHHHcCCcccCEEEECCEEEecCC-HHHHHhh
Confidence 6899999999999999999763 2223345554431 1 1234444458899999999999888864 4677764
No 70
>PHA03050 glutaredoxin; Provisional
Probab=98.41 E-value=9.4e-07 Score=74.25 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=59.2
Q ss_pred HHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhc--cCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCC
Q 018527 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 335 (354)
Q Consensus 258 ~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~ 335 (354)
.+-+.+++..+++|..+|||+|++.|.+|.+...+ ...++|.+.++.+.+. +..+=+..|-+..|+.+|||+..-|-
T Consensus 5 ~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~-~~~l~~~tG~~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 5 FVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL-RDYFEQITGGRTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHH-HHHHHHHcCCCCcCEEEECCEEEeCh
Confidence 45566778889999999999999999999764221 2445777643222111 33444446889999999999988887
Q ss_pred CCHHHHH
Q 018527 336 QDLSDLA 342 (354)
Q Consensus 336 r~l~~La 342 (354)
.++.+|.
T Consensus 84 ddl~~l~ 90 (108)
T PHA03050 84 SDLLEID 90 (108)
T ss_pred HHHHHHH
Confidence 6666654
No 71
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.41 E-value=5.9e-07 Score=74.05 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=56.8
Q ss_pred HHhcccCeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHH
Q 018527 261 KHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSD 340 (354)
Q Consensus 261 ~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~ 340 (354)
+.+++..+++|+.+|||+|++.|.++.+. .....+||.+.+..... .+..+-+..|-+.+|..+|||+..-|-.++.+
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~-~i~~~~vdid~~~~~~~-~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTL-GVNPAVHEIDKEPAGKD-IENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEEcCCCccHHH-HHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 45677889999999999999999999864 33345788875432110 12233333578899999999998888877666
Q ss_pred HH
Q 018527 341 LA 342 (354)
Q Consensus 341 La 342 (354)
|.
T Consensus 81 l~ 82 (99)
T TIGR02189 81 LH 82 (99)
T ss_pred HH
Confidence 54
No 72
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7.6e-07 Score=86.76 Aligned_cols=90 Identities=19% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCChhHHHHHHHhcccCe-EEEecCCCHHHHHHHHHHhHHHhc-----cCceeECCCCCCCCCcchhHhhhhCCCCccc
Q 018527 250 TSSSPFALSLAKHLHAIGA-KMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIEGFP 323 (354)
Q Consensus 250 t~S~~~~~~la~~L~~~g~-k~YgA~WCpHC~~qk~~fgk~A~~-----~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyP 323 (354)
.++...+.++-+..++.-+ +.|+||||++|+++.|...|.+.+ ++.+|||+.+ +.+...+||++.|
T Consensus 28 vT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--------p~vAaqfgiqsIP 99 (304)
T COG3118 28 VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--------PMVAAQFGVQSIP 99 (304)
T ss_pred chHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--------hhHHHHhCcCcCC
Confidence 3345566677777777664 468899999999999999885432 3679999864 5889999999999
Q ss_pred eee--ECCE---EeeCCCCHHHHHHHhCC
Q 018527 324 TWV--INGQ---VLSGEQDLSDLAKASGF 347 (354)
Q Consensus 324 Tw~--inG~---~y~G~r~l~~La~~sg~ 347 (354)
|-. ++|+ -+.|.+..+.|.+|..-
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~ 128 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDK 128 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHH
Confidence 954 4998 48999999999988643
No 73
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.36 E-value=2.9e-07 Score=89.93 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=60.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc---c-------CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE----E
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK---Q-------LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ----V 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~---~-------l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~----~ 331 (354)
.+-|+|.||+.-+.++|.|.+.|.+ + ...|||+.+ ..+..++.|.-|||.++ ||+ .
T Consensus 17 fv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--------~~ia~ky~I~KyPTlKvfrnG~~~~rE 88 (375)
T KOG0912|consen 17 FVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--------DDIADKYHINKYPTLKVFRNGEMMKRE 88 (375)
T ss_pred eeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--------hHHhhhhccccCceeeeeeccchhhhh
Confidence 4455699999999999999875532 1 347999863 58999999999999998 985 6
Q ss_pred eeCCCCHHHHHHHhCCC
Q 018527 332 LSGEQDLSDLAKASGFP 348 (354)
Q Consensus 332 y~G~r~l~~La~~sg~~ 348 (354)
|.|.|+.+.|.++...+
T Consensus 89 YRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 89 YRGQRSVEALIEFIEKQ 105 (375)
T ss_pred hccchhHHHHHHHHHHH
Confidence 99999999999987654
No 74
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.35 E-value=1.4e-06 Score=66.24 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=46.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhh-hh-CCCCccceeeE-CCEEeeCCCCHHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKAC-SD-AKIEGFPTWVI-NGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC-~~-~~I~gyPTw~i-nG~~y~G~r~l~~La~~ 344 (354)
+++|+++|||+|++.++.+.+. ......||.+++.. ..+.- +. .++.+.|+.++ ||+.. ..-+.++|++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-~~~~~~idi~~~~~-----~~~~~~~~~~~~~~vP~i~~~~g~~l-~~~~~~~~~~~ 74 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-GAAYEWVDIEEDEG-----AADRVVSVNNGNMTVPTVKFADGSFL-TNPSAAQVKAK 74 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-CCceEEEeCcCCHh-----HHHHHHHHhCCCceeCEEEECCCeEe-cCCCHHHHHHH
Confidence 6799999999999999999764 22344677664321 11222 22 38999999987 55443 35566677654
No 75
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.34 E-value=9.1e-07 Score=68.42 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~ 343 (354)
+++|+++|||+|++.++.+.+.. ....++|.+.+...... +..+-+..|+.++|+..+||+..-|..++.++.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELG-VKPAVVELDQHEDGSEI-QDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcC-CCcEEEEEeCCCChHHH-HHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 68999999999999999999853 34556777654321100 1233345689999999999998877777766654
No 76
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.32 E-value=1.1e-06 Score=69.60 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=50.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHh--ccCce--eECCCCCCCCCcchhHhhh--hCCCCccceeeECCEEeeCCCCHHH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACS--DAKIEGFPTWVINGQVLSGEQDLSD 340 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~--~~l~y--VeC~~~g~~~~~~~~~lC~--~~~I~gyPTw~inG~~y~G~r~l~~ 340 (354)
.+++|+.+|||+|++.++++.+... +.++| +|...++.. ..++-+ ..+++.+|+.+|||+...|-.++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~----~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS----KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH----HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHH
Confidence 4789999999999999999987432 24555 444433211 122222 2346899999999999888777776
Q ss_pred HHH
Q 018527 341 LAK 343 (354)
Q Consensus 341 La~ 343 (354)
+.+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 654
No 77
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.1e-07 Score=89.28 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=58.9
Q ss_pred hcccCeEEEecCCCHHHHHHHHHHhHHHh-----cc--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CC----
Q 018527 263 LHAIGAKMYGAFWCSHCLEQKQMFGSEAV-----KQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NG---- 329 (354)
Q Consensus 263 L~~~g~k~YgA~WCpHC~~qk~~fgk~A~-----~~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG---- 329 (354)
-++.=.++|.||||+||++++++|.+.+. .. +..+||+. ...+|++.+|++|||.++ +|
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~--------~~~~~~~~~v~~~Pt~~~f~~~~~~~ 232 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV--------HKSLASRLEVRGYPTLKLFPPGEEDI 232 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch--------HHHHhhhhcccCCceEEEecCCCccc
Confidence 33333556669999999999999988652 11 34678773 258899999999999877 33
Q ss_pred EEeeCCCCHHHHHHHhCC
Q 018527 330 QVLSGEQDLSDLAKASGF 347 (354)
Q Consensus 330 ~~y~G~r~l~~La~~sg~ 347 (354)
+.|+|.|+.+.+.++.--
T Consensus 233 ~~~~~~R~~~~i~~~v~~ 250 (383)
T KOG0191|consen 233 YYYSGLRDSDSIVSFVEK 250 (383)
T ss_pred ccccccccHHHHHHHHHh
Confidence 358999999999998754
No 78
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.27 E-value=1.7e-06 Score=67.12 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=53.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~ 343 (354)
+++|+.+|||+|++.++.+.+. .-...++|.+.+.. .+.++-+..|..++|+.++||+..-|-.++.++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-~i~~~~~di~~~~~----~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-GVTFTEIRVDGDPA----LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-CCCcEEEEecCCHH----HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 4799999999999999999864 23345677765421 13344444688999999999998888888777764
No 79
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.25 E-value=1.7e-06 Score=67.92 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=49.1
Q ss_pred ccCeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCH
Q 018527 265 AIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDL 338 (354)
Q Consensus 265 ~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l 338 (354)
+..+++|+.+|||+|++.|.++.+. .-....+|.+.+. . ...+-+..|.+.+|..++||+...|-.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-gi~y~~idi~~~~--~---~~~~~~~~g~~~vP~i~i~g~~igG~~~l 74 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-GYDFEEIPLGNDA--R---GRSLRAVTGATTVPQVFIGGKLIGGSDEL 74 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-CCCcEEEECCCCh--H---HHHHHHHHCCCCcCeEEECCEEEcCHHHH
Confidence 4558999999999999999999763 2233457766442 1 23444556899999999999887776433
No 80
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.25 E-value=1.7e-06 Score=63.91 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=50.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 342 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La 342 (354)
+++|+++|||+|++.++.+.+.. ..+..+|...+.. ....+-+..+...+|+..+||+...|..++.+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-i~~~~~di~~~~~----~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-IEFEEIDILEDGE----LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CcEEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 67999999999999999998742 2233456554321 1234455568889999999999888886666553
No 81
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.23 E-value=6.7e-06 Score=72.60 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=56.5
Q ss_pred HHHHHHHhcccC----eEEEecCCCHHHHHHHHHHhHHHhc--c-C--ceeECCCCCCCCCcchhHhhhhCCCCccceee
Q 018527 256 ALSLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAVK--Q-L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWV 326 (354)
Q Consensus 256 ~~~la~~L~~~g----~k~YgA~WCpHC~~qk~~fgk~A~~--~-l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~ 326 (354)
..++-+++++.+ ++-|+|.|||+|+.+.|.+.+-|.+ . . -.||.+. .+++.++++|++-||.+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--------~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--------VPDFNTMYELYDPCTVM 82 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--------CHHHHHHcCccCCCcEE
Confidence 445555554322 4567799999999999999886532 2 2 2466654 35999999999876644
Q ss_pred -E--CCE----EeeC--------CCCHHHHHHHh
Q 018527 327 -I--NGQ----VLSG--------EQDLSDLAKAS 345 (354)
Q Consensus 327 -i--nG~----~y~G--------~r~l~~La~~s 345 (354)
+ ||+ +.+| ..+.++|.+..
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i 116 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 116 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHH
Confidence 4 786 4677 67778887654
No 82
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.23 E-value=1.9e-06 Score=86.14 Aligned_cols=73 Identities=22% Similarity=0.436 Sum_probs=55.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh---c---c--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE-----Ee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV---K---Q--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ-----VL 332 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~---~---~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~-----~y 332 (354)
+++|.|+||+||+++++.|.+.+. . + +.+|||+.+ +... .+|++|||..+ +|+ +|
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n---------~~~~-~~i~~~Pt~~~~~~~~~~~~~~~ 437 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN---------DVPP-FEVEGFPTIKFVPAGKKSEPVPY 437 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC---------ccCC-CCccccCEEEEEeCCCCcCceEe
Confidence 567789999999999999977431 1 2 346888753 2223 89999999877 442 58
Q ss_pred eCCCCHHHHHHHhCCCCC
Q 018527 333 SGEQDLSDLAKASGFPEM 350 (354)
Q Consensus 333 ~G~r~l~~La~~sg~~~~ 350 (354)
.|.++.++|.++......
T Consensus 438 ~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 438 DGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred cCcCCHHHHHHHHHhcCC
Confidence 999999999999876543
No 83
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.20 E-value=2.5e-06 Score=68.21 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=49.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--cCceeECCCCCCCCCcchhHhhhhCC--CCccceeeECCEEeeCCCCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--~l~yVeC~~~g~~~~~~~~~lC~~~~--I~gyPTw~inG~~y~G~r~l~~La~ 343 (354)
+++|+.+|||+|++.|+++.+...+ .+.|.+.+-+..... ..++-+..+ ++..|+.+|||+..-|-.++.++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~--~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS--KADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH--HHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 5799999999999999999874322 355544433221110 122323334 5899999999998888877777654
No 84
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.17 E-value=5.5e-06 Score=63.66 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=52.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~ 344 (354)
+++|+.++||+|++.++.+.+. .....++|.+.+. +..+..++.|...+|+.++||+..-|..+.++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-~i~~~~~di~~~~-----~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-GIAFEEINIDEQP-----EAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-CCceEEEECCCCH-----HHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhc
Confidence 4799999999999999999763 2223346665442 123445667989999999988766666788888775
No 85
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.17 E-value=2.1e-06 Score=63.47 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
+++|+.+|||+|++.|.++.+. .-...++|.+.+.. .+.++-+..|..++|+.++||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-~i~y~~~dv~~~~~----~~~~l~~~~g~~~~P~v~i~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-GIPYEEVDVDEDEE----AREELKELSGVRTVPQVFIDGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TBEEEEEEGGGSHH----HHHHHHHHHSSSSSSEEEETTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-CCeeeEcccccchh----HHHHHHHHcCCCccCEEEECCEE
Confidence 4799999999999999999753 22344677776521 13344444599999999999974
No 86
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.17 E-value=3.8e-06 Score=64.06 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=51.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCC-ccceeeECCEEeeCCCCHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE-GFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~-gyPTw~inG~~y~G~r~l~~La~ 343 (354)
+++|+.+|||+|++.|.++.+. .....++|.+.+. . .+.++=+..+.. ++|+.++||+..-|-.++.+|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-~i~~~~i~i~~~~---~-~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-GVDYEEIDVDGDP---A-LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-CCcEEEEECCCCH---H-HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 6799999999999999999864 2223356665431 1 123333445766 99999999999988888887764
No 87
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.16 E-value=2.4e-06 Score=65.60 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLA 342 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La 342 (354)
+++|+.+|||+|++.+..+.+. .....++|...+.. ...++-+..+-..+|+.++||+...|..++.+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-gi~~~~~di~~~~~----~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-GLPYVEINIDIFPE----RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-CCceEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6799999999999999999863 22344677765421 1345555567789999999999888877777654
No 88
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.11 E-value=9.6e-06 Score=66.63 Aligned_cols=80 Identities=10% Similarity=0.167 Sum_probs=59.2
Q ss_pred HHHHHHhcccCeEEEe-----cCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeECC
Q 018527 257 LSLAKHLHAIGAKMYG-----AFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (354)
Q Consensus 257 ~~la~~L~~~g~k~Yg-----A~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG 329 (354)
..+.+.+++..+++|. ++|||+|++.|++|.+. .++| +|...+ .. -+..+.+..|-+.+|..+|||
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---~i~~~~~di~~~---~~-~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC---GVPFAYVNVLED---PE-IRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc---CCCEEEEECCCC---HH-HHHHHHHHhCCCCCCEEEECC
Confidence 3566778888899994 39999999999999763 3555 554332 11 144566667888999999999
Q ss_pred EEeeCCCCHHHHHH
Q 018527 330 QVLSGEQDLSDLAK 343 (354)
Q Consensus 330 ~~y~G~r~l~~La~ 343 (354)
+..-|-.++.+|.+
T Consensus 76 ~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 76 EFVGGCDIIMEMYQ 89 (97)
T ss_pred EEEeChHHHHHHHH
Confidence 98888888777654
No 89
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.3e-06 Score=68.81 Aligned_cols=68 Identities=22% Similarity=0.407 Sum_probs=51.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhcc--Cc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCCH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDL 338 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~--l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~l 338 (354)
++.|.|.|||-|+.++|.|.+.|.++ +. .||+++ + .++|++.+|++.||..+ ||+ ++.|...
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-----~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~- 95 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-----EEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK- 95 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-----HhHHHhcCceEeeEEEEEECCEEEEEEecCCH-
Confidence 55677999999999999999976543 33 577765 2 48899999999999877 886 5677644
Q ss_pred HHHHHH
Q 018527 339 SDLAKA 344 (354)
Q Consensus 339 ~~La~~ 344 (354)
++|.+.
T Consensus 96 ~~l~~~ 101 (106)
T KOG0907|consen 96 AELEKK 101 (106)
T ss_pred HHHHHH
Confidence 355554
No 90
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.09 E-value=8.4e-06 Score=68.94 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=44.7
Q ss_pred hhHHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHh---ccCceeECCCCCCCCCcchhHhhhhCCCCc--cceeeE-
Q 018527 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEG--FPTWVI- 327 (354)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~---~~l~yVeC~~~g~~~~~~~~~lC~~~~I~g--yPTw~i- 327 (354)
..+.+.|+.-++.=++.|+|+||++|+++++.|.+.+. ....+|..+-+..+. ..-+++++.| +||..+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-----~~~~~~~~~g~~vPt~~f~ 83 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-----PKDEEFSPDGGYIPRILFL 83 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-----chhhhcccCCCccceEEEE
Confidence 34555555555555778889999999999998876322 122344433322111 2234678887 999877
Q ss_pred --CCE
Q 018527 328 --NGQ 330 (354)
Q Consensus 328 --nG~ 330 (354)
||+
T Consensus 84 ~~~Gk 88 (117)
T cd02959 84 DPSGD 88 (117)
T ss_pred CCCCC
Confidence 565
No 91
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.05 E-value=1.4e-05 Score=66.91 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=49.9
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhcc-CceeECCCCCC---------------CC--CcchhHhhhhCC
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ-LNYVECFPDGY---------------RK--GTKIAKACSDAK 318 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~-l~yVeC~~~g~---------------~~--~~~~~~lC~~~~ 318 (354)
+.++..-.+.=+.+|.|.|||+|+++.+.+.+.+.+. +..|....+.. .. -..+.+++++++
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 97 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG 97 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC
Confidence 3444332233355666999999999999887643222 22221110000 00 001246888999
Q ss_pred CCccce-eeE--CCE---EeeCCCCHHHH
Q 018527 319 IEGFPT-WVI--NGQ---VLSGEQDLSDL 341 (354)
Q Consensus 319 I~gyPT-w~i--nG~---~y~G~r~l~~L 341 (354)
|.++|+ .++ +|+ ++.|..+.++|
T Consensus 98 v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 98 VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999996 445 676 58899987765
No 92
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.9e-05 Score=62.80 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=53.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhC-CCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA-KIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~-~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
.+.+|.-+|||+|++.|.++.+. .++|.|.+.+... .+...+.-++. |.+.+|..+|||+..-|..++++|.+.-
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~---g~~~~~i~~~~~~-~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~ 77 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRK---GVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKG 77 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHc---CCCcEEEEecCCc-HHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhc
Confidence 46899999999999999998853 4555444332211 11122444444 7899999999999888889999987643
No 93
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.02 E-value=2e-05 Score=67.58 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=55.1
Q ss_pred HHHHHHhccc----CeEEEec-------CCCHHHHHHHHHHhHHHh--c-cCceeECCCCCC--CCCcchhHhhhhCCCC
Q 018527 257 LSLAKHLHAI----GAKMYGA-------FWCSHCLEQKQMFGSEAV--K-QLNYVECFPDGY--RKGTKIAKACSDAKIE 320 (354)
Q Consensus 257 ~~la~~L~~~----g~k~YgA-------~WCpHC~~qk~~fgk~A~--~-~l~yVeC~~~g~--~~~~~~~~lC~~~~I~ 320 (354)
.++-+.+++. =++.|.| +|||+|+.+++.+.+.+. . ++.++.++-+.. .++ +..++-++++|+
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d-~~~~~~~~~~I~ 88 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRD-PNNPFRTDPKLT 88 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccC-cchhhHhccCcc
Confidence 3444555432 2556779 999999999998877432 2 355555543321 000 135778889999
Q ss_pred -ccceeeE--CCEEeeCCC--CHHHHHHH
Q 018527 321 -GFPTWVI--NGQVLSGEQ--DLSDLAKA 344 (354)
Q Consensus 321 -gyPTw~i--nG~~y~G~r--~l~~La~~ 344 (354)
+.||+.+ +|++..|.. +.+.|..+
T Consensus 89 ~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 89 TGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred cCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 9999887 677777775 55555443
No 94
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.1e-05 Score=71.75 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=58.9
Q ss_pred HHHHHhcccC---eEEEecCCCHHHHHHHHHHhHHHhccCc-----eeECCCCCCCCCcchhHhhhhCCCCccceeeE--
Q 018527 258 SLAKHLHAIG---AKMYGAFWCSHCLEQKQMFGSEAVKQLN-----YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-- 327 (354)
Q Consensus 258 ~la~~L~~~g---~k~YgA~WCpHC~~qk~~fgk~A~~~l~-----yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i-- 327 (354)
++-+.+.+.+ +++|.|.||+-|+.+.|...+-+.++-+ .||-+. ..++..+++|+.+||..+
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--------~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--------HPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred HHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--------ccchHhhcceeeeeEEEEEE
Confidence 3444444444 6677799999999999999875544322 355443 358999999999999776
Q ss_pred CCE---EeeCCCCHHHHHHHh
Q 018527 328 NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 nG~---~y~G~r~l~~La~~s 345 (354)
||+ +..|..+.+.|.++.
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i 144 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLI 144 (150)
T ss_pred CCEEeeeecccCCHHHHHHHH
Confidence 997 588999988887654
No 95
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.99 E-value=1.4e-05 Score=62.30 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=48.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCc-eeECCCCCCCCCcchhHhhhhCCCCccceeeECCE-EeeC-CCCHHHHHHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLN-YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ-VLSG-EQDLSDLAKA 344 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~-yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~-~y~G-~r~l~~La~~ 344 (354)
++.| .++||+|.++.+...+.+ ++.+ -+|+..-. + ..++ .++||.+.||..|||+ ++.| .-+.++|.++
T Consensus 3 I~v~-~~~C~~C~~~~~~~~~~~-~~~~i~~ei~~~~-~----~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVF-SPGCPYCPELVQLLKEAA-EELGIEVEIIDIE-D----FEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEEE-CSSCTTHHHHHHHHHHHH-HHTTEEEEEEETT-T----HHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHH
T ss_pred EEEe-CCCCCCcHHHHHHHHHHH-HhcCCeEEEEEcc-C----HHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHH
Confidence 4566 677999999999987643 2222 23443321 1 3455 9999999999999998 6999 8899999876
Q ss_pred h
Q 018527 345 S 345 (354)
Q Consensus 345 s 345 (354)
.
T Consensus 75 l 75 (76)
T PF13192_consen 75 L 75 (76)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.98 E-value=1.5e-05 Score=60.91 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=48.7
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~ 344 (354)
.+++|..+|||+|++.|+++.+. ......+|.+.+. . ...+=+..|...+|..++||+...| .++|.++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~-~i~~~~~~v~~~~--~---~~~~~~~~g~~~vP~ifi~g~~igg---~~~l~~~ 70 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN-GISYEEIPLGKDI--T---GRSLRAVTGAMTVPQVFIDGELIGG---SDDLEKY 70 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc-CCCcEEEECCCCh--h---HHHHHHHhCCCCcCeEEECCEEEeC---HHHHHHH
Confidence 37899999999999999999863 2233456665442 1 1233333588999999999987766 5666655
No 97
>PRK10638 glutaredoxin 3; Provisional
Probab=97.95 E-value=1.7e-05 Score=62.52 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=52.0
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAK 343 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~ 343 (354)
.+++|+.+|||+|++.+..+.+. ......+|.+.+.. .+.++-+..+...+|+.++||+..-|-.++.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~-gi~y~~~dv~~~~~----~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSK-GVSFQEIPIDGDAA----KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHc-CCCcEEEECCCCHH----HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 47899999999999999999863 22233577764321 13445566788899999999998888766555543
No 98
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.95 E-value=3.7e-05 Score=61.18 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=51.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
+++|+.+|||+|++.|..+.+. .++| ||.+.+. +..+..++.|.+..|+.+++|+... ..+.++|.++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~---gI~~~~idi~~~~-----~~~~~~~~~g~~~vPvv~i~~~~~~-Gf~~~~l~~~~ 73 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR---GFDFEMINVDRVP-----EAAETLRAQGFRQLPVVIAGDLSWS-GFRPDMINRLH 73 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC---CCceEEEECCCCH-----HHHHHHHHcCCCCcCEEEECCEEEe-cCCHHHHHHHH
Confidence 6899999999999999999763 4554 6665432 1234456678899999999987666 45678888765
No 99
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.94 E-value=1.7e-05 Score=63.92 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHhcccCeEEEec-----CCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCC
Q 018527 261 KHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGE 335 (354)
Q Consensus 261 ~~L~~~g~k~YgA-----~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~ 335 (354)
+.+++..+++|.- +|||+|++.|.++.+. .....++|...+. . -+..+.+..|-+.+|..+|||+.+-|-
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-~i~y~~idv~~~~---~-~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL-GVDFGTFDILEDE---E-VRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-CCCeEEEEcCCCH---H-HHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 4567788999943 7999999999999764 2234456765442 1 144566667889999999999999888
Q ss_pred CCHHHHHH
Q 018527 336 QDLSDLAK 343 (354)
Q Consensus 336 r~l~~La~ 343 (354)
.++.+|.+
T Consensus 78 ~~l~~l~~ 85 (90)
T cd03028 78 DIVKEMHE 85 (90)
T ss_pred HHHHHHHH
Confidence 88777754
No 100
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.93 E-value=2.1e-05 Score=63.09 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=53.2
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhc---cCc--eeECCCCCCCCCcchhHhhhhCCCC--ccceeeE--C--CEEe---
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVK---QLN--YVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI--N--GQVL--- 332 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~---~l~--yVeC~~~g~~~~~~~~~lC~~~~I~--gyPTw~i--n--G~~y--- 332 (354)
-+.+|.++||++|++.++.|.+-|.+ ++. +||++. ..++++.+||+ ++||..+ + |++|
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--------~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~ 86 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--------FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP 86 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--------hHHHHHHcCCChhhCCEEEEEecccccccCCC
Confidence 36678899999999999999886633 244 566653 24789999999 9999887 4 5543
Q ss_pred eCCCCHHHHHHHh
Q 018527 333 SGEQDLSDLAKAS 345 (354)
Q Consensus 333 ~G~r~l~~La~~s 345 (354)
.|..+.++|.++.
T Consensus 87 ~~~~~~~~l~~fi 99 (103)
T cd02982 87 EEELTAESLEEFV 99 (103)
T ss_pred ccccCHHHHHHHH
Confidence 3445888988875
No 101
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=5e-05 Score=66.45 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=57.7
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHh--c--cCc--eeECCCCCCCC--------------CcchhHhhhh
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV--K--QLN--YVECFPDGYRK--------------GTKIAKACSD 316 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~--~--~l~--yVeC~~~g~~~--------------~~~~~~lC~~ 316 (354)
.++.+.-.+.=+.+|.|+|||+|+++.+.|.+.+. + .+. .|+++.+...- .....+++++
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 45555333333556779999999999888866431 1 132 56665331000 0012478999
Q ss_pred CCCCccceeeE---CCE---EeeCCCCHHHHHHHh
Q 018527 317 AKIEGFPTWVI---NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 317 ~~I~gyPTw~i---nG~---~y~G~r~l~~La~~s 345 (354)
++|+++|+-.+ ||+ .+.|..+.++|.++.
T Consensus 134 ~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 134 YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 99999998554 576 579999999998764
No 102
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.88 E-value=3.8e-05 Score=69.53 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=41.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhcc--Cc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~--l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~ 330 (354)
++.|.|+||+.|+.+.+.+.+.|.+. +. .|+++. . +++.+++|++.||+.+ ||+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~--------~-~l~~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA--------T-GASDEFDTDALPALLVYKGGE 146 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc--------h-hhHHhCCCCCCCEEEEEECCE
Confidence 44677999999999999998876432 33 455542 2 6788999999999887 887
No 103
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.88 E-value=3.8e-05 Score=66.08 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=44.3
Q ss_pred hhHHHHHHHhcccCeEEEecCCCHHHHHHHH-HHhHHH-hc----cCceeECCCCCCCCCcc--hhHhhh-hCCCCccce
Q 018527 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEA-VK----QLNYVECFPDGYRKGTK--IAKACS-DAKIEGFPT 324 (354)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~-~fgk~A-~~----~l~yVeC~~~g~~~~~~--~~~lC~-~~~I~gyPT 324 (354)
+.+.+.|+.-.+.=+..|+|.||+.|+.+++ .|.+.. .+ ..-.|.-+.+. +++.. ..+..+ .+|+.|+||
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~-~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE-RPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc-CcHHHHHHHHHHHHhcCCCCCCE
Confidence 4455666665555566789999999999975 676522 11 22334444332 11100 011111 358999999
Q ss_pred eeE---CCE
Q 018527 325 WVI---NGQ 330 (354)
Q Consensus 325 w~i---nG~ 330 (354)
+++ +|+
T Consensus 84 ~vfl~~~G~ 92 (124)
T cd02955 84 NVFLTPDLK 92 (124)
T ss_pred EEEECCCCC
Confidence 887 676
No 104
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.88 E-value=4.7e-05 Score=73.55 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=58.4
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhc---cCceeECCCCCCC---CCcchhHhhhhCCCCccceeeE---
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYR---KGTKIAKACSDAKIEGFPTWVI--- 327 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g~~---~~~~~~~lC~~~~I~gyPTw~i--- 327 (354)
..+++.-.+.++.+|.|.|||+|+++.+.+.+-+.+ .+-.|+.+.+... .-.....+.+++||+++||..+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 445555556778888899999999999988764322 2334555432100 0001235788999999999776
Q ss_pred CCE----EeeCCCCHHHHHHHh
Q 018527 328 NGQ----VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 nG~----~y~G~r~l~~La~~s 345 (354)
||+ ...|..+.++|.+..
T Consensus 239 ~~~~v~~v~~G~~s~~eL~~~i 260 (271)
T TIGR02740 239 DPNQFTPIGFGVMSADELVDRI 260 (271)
T ss_pred CCCEEEEEEeCCCCHHHHHHHH
Confidence 343 356999999987653
No 105
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.87 E-value=0.00012 Score=65.43 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=48.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCC-----------------cchhHhhhhCCCCccce-eeE--
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG-----------------TKIAKACSDAKIEGFPT-WVI-- 327 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~-----------------~~~~~lC~~~~I~gyPT-w~i-- 327 (354)
+.+|.|.|||+|+++.+.+.+.+.+.+..|-.+.+....+ .+..++.+++++.++|+ ..|
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~ 146 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDG 146 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcC
Confidence 4466699999999998887654322222211111100000 00135677899999995 666
Q ss_pred CCE---EeeCCCCHHHHHHHh
Q 018527 328 NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 nG~---~y~G~r~l~~La~~s 345 (354)
||+ ++.|..+.++|.++.
T Consensus 147 ~G~i~~~~~G~~~~~~l~~~l 167 (173)
T TIGR00385 147 NGVILYRHAGPLNNEVWTEGF 167 (173)
T ss_pred CceEEEEEeccCCHHHHHHHH
Confidence 686 578999988887653
No 106
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.83 E-value=5.7e-05 Score=62.43 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=54.0
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCC----------------CCCCcchhHhhhhCC
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDG----------------YRKGTKIAKACSDAK 318 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g----------------~~~~~~~~~lC~~~~ 318 (354)
.+++..-.+.-+.+|.+.|||+|+.+.+.+.+.+ +++.. |..+++. .-. .+..++++.++
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLA-ADYPVVSVALRSGDDGAVARFMQKKGYGFPVIN-DPDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHH-hhCCEEEEEccCCCHHHHHHHHHHcCCCccEEE-CCCcHHHHhCC
Confidence 3344433344566777999999999988887532 22221 2111110 000 01247899999
Q ss_pred CCccceeeE---CCE--EeeCCCCHHHHHHH
Q 018527 319 IEGFPTWVI---NGQ--VLSGEQDLSDLAKA 344 (354)
Q Consensus 319 I~gyPTw~i---nG~--~y~G~r~l~~La~~ 344 (354)
|.+.||..+ ||. ++.|..+.++|.+.
T Consensus 91 i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 999999776 443 58999999999764
No 107
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.78 E-value=8.9e-05 Score=63.32 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=42.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc--c-Cc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK--Q-LN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~--~-l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~ 330 (354)
++-|+|.|||-|+.+.|.|.+.|.+ + .. .||.+. .++++++++|+.-||..+ ||+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCceeCcEEEEEECCc
Confidence 5578899999999999999987642 2 33 466553 368999999999999665 775
No 108
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.74 E-value=0.00017 Score=64.17 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=50.1
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHHhc-cCc--eeECCCCCCC--CCc--chhHhh-hhC---CCCccceeeE---CC
Q 018527 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR--KGT--KIAKAC-SDA---KIEGFPTWVI---NG 329 (354)
Q Consensus 264 ~~~g~k~YgA~WCpHC~~qk~~fgk~A~~-~l~--yVeC~~~g~~--~~~--~~~~lC-~~~---~I~gyPTw~i---nG 329 (354)
.+..+.+|.|.|||+|++..|.+.+.+.+ .+. .|+.+.+... ... ...+.- +.+ +|+++||-.+ +|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 44458888899999999999998774322 222 4554432100 000 001222 223 8999999554 44
Q ss_pred E----EeeCCCCHHHHHHH
Q 018527 330 Q----VLSGEQDLSDLAKA 344 (354)
Q Consensus 330 ~----~y~G~r~l~~La~~ 344 (354)
+ ++.|..+.++|.+.
T Consensus 130 ~~i~~~~~G~~s~~~l~~~ 148 (153)
T TIGR02738 130 RKAYPVLQGAVDEAELANR 148 (153)
T ss_pred CEEEEEeecccCHHHHHHH
Confidence 3 47899999998765
No 109
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.72 E-value=0.00018 Score=75.48 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=51.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh--c--cCceeECCCCCC----C------------------CCcchhHhhhhCCCCc
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV--K--QLNYVECFPDGY----R------------------KGTKIAKACSDAKIEG 321 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~--~--~l~yVeC~~~g~----~------------------~~~~~~~lC~~~~I~g 321 (354)
++.|-|.|||+|+++.|.+.+.+. + .+..|-...++. + .-.+..++.+.++|++
T Consensus 60 vV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g 139 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISV 139 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCC
Confidence 456669999999999998866432 1 222211110000 0 0001246888999999
Q ss_pred cceee-E--CCE---EeeCCCCHHHHHHHhC
Q 018527 322 FPTWV-I--NGQ---VLSGEQDLSDLAKASG 346 (354)
Q Consensus 322 yPTw~-i--nG~---~y~G~r~l~~La~~sg 346 (354)
+||.+ | ||+ ++.|..+.++|.++..
T Consensus 140 iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 140 YPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99984 4 676 5899999999987665
No 110
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.67 E-value=0.00062 Score=61.55 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=48.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCc--eeECCCCCC-CC------C--------cchhHhhhhCCCCccce-eeE--
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGY-RK------G--------TKIAKACSDAKIEGFPT-WVI-- 327 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~--yVeC~~~g~-~~------~--------~~~~~lC~~~~I~gyPT-w~i-- 327 (354)
+..|.|.|||+|+++.+.+.+.+.+.+. .|+-+.+.. .. + .+..++.++++|.++|| .+|
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~ 151 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDG 151 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECC
Confidence 5566699999999999988664333333 233211100 00 0 01224667899999995 666
Q ss_pred CCE---EeeCCCCHHHHHHH
Q 018527 328 NGQ---VLSGEQDLSDLAKA 344 (354)
Q Consensus 328 nG~---~y~G~r~l~~La~~ 344 (354)
||+ ++.|..+.++|.+.
T Consensus 152 ~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 152 NGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred CceEEEEEecCCCHHHHHHH
Confidence 575 68999988887664
No 111
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.64 E-value=0.0001 Score=58.02 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHh----ccC--ceeECCCC-CCCC--------------CcchhHhhh
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQL--NYVECFPD-GYRK--------------GTKIAKACS 315 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~----~~l--~yVeC~~~-g~~~--------------~~~~~~lC~ 315 (354)
..+++.-.+.-+.+|++.|||+|+++.+.+.+... ..+ -.|+++++ ...- -.+..++.+
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAK 91 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHH
Confidence 34433334455778889999999999888866421 122 35777653 0000 000146788
Q ss_pred hCCCCccceeeE---CCE
Q 018527 316 DAKIEGFPTWVI---NGQ 330 (354)
Q Consensus 316 ~~~I~gyPTw~i---nG~ 330 (354)
++++.++|++.+ +|+
T Consensus 92 ~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 92 AYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred hcCcCccceEEEECCCCc
Confidence 999999999776 565
No 112
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.62 E-value=0.00019 Score=75.45 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=65.4
Q ss_pred hhHHHHHHHh-cccCeEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeEC
Q 018527 254 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (354)
Q Consensus 254 ~~~~~la~~L-~~~g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in 328 (354)
+..++..+.| +...+++|-.++||+|.+..+.+.+-|.. ++. -||.+. .+++.++++|.+.|+.+||
T Consensus 465 ~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--------~~~~~~~~~v~~vP~~~i~ 536 (555)
T TIGR03143 465 EELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--------FPDLKDEYGIMSVPAIVVD 536 (555)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--------cHHHHHhCCceecCEEEEC
Confidence 3444445555 45578998899999999999988775443 243 355443 4688999999999999999
Q ss_pred CE-EeeCCCCHHHHHHHhC
Q 018527 329 GQ-VLSGEQDLSDLAKASG 346 (354)
Q Consensus 329 G~-~y~G~r~l~~La~~sg 346 (354)
|+ .+.|..+.+++.++.|
T Consensus 537 ~~~~~~G~~~~~~~~~~~~ 555 (555)
T TIGR03143 537 DQQVYFGKKTIEEMLELIG 555 (555)
T ss_pred CEEEEeeCCCHHHHHHhhC
Confidence 97 6999999999999876
No 113
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.62 E-value=0.00016 Score=66.55 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=48.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhcc--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCC-----
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGE----- 335 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~----- 335 (354)
++.|.|+||++|+.+.+.|.+.|.+. +.+|..+.+ +...+++|++.||..+ ||+ ++.|.
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad---------~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg 176 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST---------QCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGG 176 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH---------HhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCC
Confidence 44566999999999999999877543 445555432 2246799999999887 887 45554
Q ss_pred --CCHHHHHHHh
Q 018527 336 --QDLSDLAKAS 345 (354)
Q Consensus 336 --r~l~~La~~s 345 (354)
.+.++|..+.
T Consensus 177 ~~~~~~~lE~~L 188 (192)
T cd02988 177 MNTTMEDLEWLL 188 (192)
T ss_pred CCCCHHHHHHHH
Confidence 4455665543
No 114
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.61 E-value=0.00029 Score=59.58 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=30.3
Q ss_pred HhhhhCCCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 312 KACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 312 ~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
+++++.||+|.||.++||+.+.|..+.++|.+..
T Consensus 120 ~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 120 QLARALGITGTPAFIIGDTVIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHcCCCcCCeEEECCEEecCCCCHHHHHHHh
Confidence 4567789999999999999999999999998764
No 115
>smart00594 UAS UAS domain.
Probab=97.61 E-value=0.00029 Score=59.67 Aligned_cols=96 Identities=19% Similarity=0.114 Sum_probs=65.4
Q ss_pred ccccCCCChhHHHHHHHhcccCeEEEecCCCHHHHHHHH-HHhHHHhc-cC--cee--ECCCCCCCCCcchhHhhhhCCC
Q 018527 246 TEITTSSSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NYV--ECFPDGYRKGTKIAKACSDAKI 319 (354)
Q Consensus 246 ~~itt~S~~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~-~fgk~A~~-~l--~yV--eC~~~g~~~~~~~~~lC~~~~I 319 (354)
|.....|=..+++-|++-.+.-++++.++||+.|+++.. .|...... .+ +|| -++.+.. . ..+++..+++
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~-e---g~~l~~~~~~ 84 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS-E---GQRVSQFYKL 84 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh-h---HHHHHHhcCc
Confidence 444554555666667766667788888999999999865 57554322 12 232 2333221 1 3589999999
Q ss_pred CccceeeE---CC-E-------EeeCCCCHHHHHHHh
Q 018527 320 EGFPTWVI---NG-Q-------VLSGEQDLSDLAKAS 345 (354)
Q Consensus 320 ~gyPTw~i---nG-~-------~y~G~r~l~~La~~s 345 (354)
++|||+.+ +| + +++|..+.++|.+..
T Consensus 85 ~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99999887 44 2 589999999998753
No 116
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.53 E-value=0.00018 Score=49.40 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=37.2
Q ss_pred EEEecCCCHHHHHHHHHHhHH--HhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeEC
Q 018527 269 KMYGAFWCSHCLEQKQMFGSE--AVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~--A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in 328 (354)
.+|.+.||+||+++++.+.+. ...++.+ ++|+.+. . ..+...+.++.++|+.++.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--A---LEKELKRYGVGGVPTLVVF 60 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--H---HhhHHHhCCCccccEEEEE
Confidence 578899999999999998863 1234554 5555432 1 1121247899999998883
No 117
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.48 E-value=0.00046 Score=57.27 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=60.9
Q ss_pred hhHHHHHHHhcccCeEEEecCCCHHHHHHHH-HHhHHHhc-cC--ce--eECCCCCCCCCcchhHhhhhCCCCccceeeE
Q 018527 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAVK-QL--NY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (354)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~-~fgk~A~~-~l--~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i 327 (354)
+.+++.|++=++.=++++.++||+.|++++. .|..+... .+ .| +..+.+. . ...+++..+++++|||..+
T Consensus 7 ~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~--~--e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 7 EDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS--S--EGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred HHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC--c--cHHHHHHHhCccCCCeEEE
Confidence 3556667766666677888999999999965 67554332 22 23 3333321 1 2457899999999999776
Q ss_pred ----CCE---EeeCCCCHHHHHHHh
Q 018527 328 ----NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 328 ----nG~---~y~G~r~l~~La~~s 345 (354)
+|+ ++.|-.+.+++.+..
T Consensus 83 i~~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 83 IDPRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred EeCccCcEeEEEcCCCCHHHHHHHH
Confidence 465 689999999987654
No 118
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.43 E-value=0.00018 Score=60.58 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=45.4
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHH--h-c---c--CceeECCCCCCC----------------CCcchhH
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGYR----------------KGTKIAK 312 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A--~-~---~--l~yVeC~~~g~~----------------~~~~~~~ 312 (354)
+++++.-.+.-+.+|.|.|||+|+++.+.+.+.+ . + . +-.|..+.+... .......
T Consensus 11 v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 11 VPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred ccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 4454444444566788999999999988876531 1 1 2 224555433100 0011246
Q ss_pred hhhhCCCCccceeeE---CCE
Q 018527 313 ACSDAKIEGFPTWVI---NGQ 330 (354)
Q Consensus 313 lC~~~~I~gyPTw~i---nG~ 330 (354)
++++++|+++||..+ ||+
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCC
Confidence 888999999999766 565
No 119
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00056 Score=57.51 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=61.4
Q ss_pred HHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCC
Q 018527 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQD 337 (354)
Q Consensus 258 ~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~ 337 (354)
.+-+-+.+..+++|.-.|||.|++.|.+|.+. ......||-+.+...++. |..+-+-.+-+.+|..+|||+-.-|..+
T Consensus 6 ~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~-~v~~~vvELD~~~~g~ei-q~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 6 KVRKMISENPVVIFSKSSCPYCHRAKELLSDL-GVNPKVVELDEDEDGSEI-QKALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred HHHHHhhcCCEEEEECCcCchHHHHHHHHHhC-CCCCEEEEccCCCCcHHH-HHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 35566778889999999999999999999872 222335777766433322 4555655677899999999998888777
Q ss_pred HHHHH
Q 018527 338 LSDLA 342 (354)
Q Consensus 338 l~~La 342 (354)
+.+|.
T Consensus 84 l~~lh 88 (104)
T KOG1752|consen 84 LMALH 88 (104)
T ss_pred HHHHH
Confidence 77664
No 120
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.41 E-value=0.00025 Score=55.62 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=24.9
Q ss_pred hHHHHHHHhcccCeEEEecCCCHHHHHHHHHH
Q 018527 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMF 286 (354)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~f 286 (354)
.+.+.|+.=++.=.++|+|.||++|+.+++.+
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 34555666556668889999999999999876
No 121
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.39 E-value=0.00019 Score=65.20 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.6
Q ss_pred hhHhhhhCCCCccceeeE-CCEEeeCCCCHHHHHHH
Q 018527 310 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i-nG~~y~G~r~l~~La~~ 344 (354)
..+++++.||+|.||+++ ||+.+.|..+.++|.++
T Consensus 161 ~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~ 196 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEAL 196 (197)
T ss_pred HHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhh
Confidence 457899999999999999 79999999999999876
No 122
>PTZ00062 glutaredoxin; Provisional
Probab=97.37 E-value=0.00067 Score=63.26 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=50.7
Q ss_pred HHHHHHHhccc-C--eEEEecCCCHHHHHHHHHHhHHHhc--cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--C
Q 018527 256 ALSLAKHLHAI-G--AKMYGAFWCSHCLEQKQMFGSEAVK--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (354)
Q Consensus 256 ~~~la~~L~~~-g--~k~YgA~WCpHC~~qk~~fgk~A~~--~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--n 328 (354)
..++.+..++. | +.+|.|+|||.|+.+++.+.+.+.+ .+.++..+. + ++|.+.||.++ |
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~----------d----~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL----------A----DANNEYGVFEFYQN 71 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc----------c----cCcccceEEEEEEC
Confidence 34555555522 2 5577799999999999999886533 355655542 1 89999999887 8
Q ss_pred CE---EeeCCCCHHHHHHH
Q 018527 329 GQ---VLSGEQDLSDLAKA 344 (354)
Q Consensus 329 G~---~y~G~r~l~~La~~ 344 (354)
|+ ++.|.. ..+|.+.
T Consensus 72 g~~i~r~~G~~-~~~~~~~ 89 (204)
T PTZ00062 72 SQLINSLEGCN-TSTLVSF 89 (204)
T ss_pred CEEEeeeeCCC-HHHHHHH
Confidence 87 567764 5565543
No 123
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.32 E-value=0.00029 Score=59.81 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=45.5
Q ss_pred hHHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHH--h-c---c--CceeECCCCCC--------C--------CC-cc
Q 018527 255 FALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V-K---Q--LNYVECFPDGY--------R--------KG-TK 309 (354)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A--~-~---~--l~yVeC~~~g~--------~--------~~-~~ 309 (354)
..+.+++.-.+.=+.+|.|.|||+|+++.+.+.+.+ . + . +-+|..+.+.. + .+ ..
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~ 87 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEEL 87 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHH
Confidence 344455443344466788999999999988876532 1 1 2 23566654310 0 00 11
Q ss_pred hhHhhhhCCCCccceeeE---CCE
Q 018527 310 IAKACSDAKIEGFPTWVI---NGQ 330 (354)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i---nG~ 330 (354)
...+.+.++|.++||-.+ ||+
T Consensus 88 ~~~~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 88 RELLEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC
Confidence 235667799999999775 565
No 124
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.32 E-value=0.00068 Score=70.51 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=68.6
Q ss_pred ChhHHHHHHHh-cccCeEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeE
Q 018527 253 SPFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (354)
Q Consensus 253 ~~~~~~la~~L-~~~g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i 327 (354)
++...+..+.| +...+++|-.++||||.+..+.+.+.|.. .+. -||... ++++..+++|.+.|+.++
T Consensus 104 ~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 104 DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL--------FQDEVEARNIMAVPTVFL 175 (517)
T ss_pred CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh--------CHhHHHhcCCcccCEEEE
Confidence 34555666666 46679999999999999999999876543 232 344432 468999999999999999
Q ss_pred CCE-EeeCCCCHHHHHHHhCCC
Q 018527 328 NGQ-VLSGEQDLSDLAKASGFP 348 (354)
Q Consensus 328 nG~-~y~G~r~l~~La~~sg~~ 348 (354)
||+ .++|..+.+++.+....+
T Consensus 176 ~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 176 NGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCcEEEecCCCHHHHHHHHhcc
Confidence 986 699999999999887653
No 125
>PRK10824 glutaredoxin-4; Provisional
Probab=97.25 E-value=0.00094 Score=57.06 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=56.2
Q ss_pred HHHHHHhcccCeEEEec-----CCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 257 LSLAKHLHAIGAKMYGA-----FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA-----~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
..+.+.+++..+++|-. ||||+|++.|.++.+. .....++|-..+.. . +..+=+..|-+.+|-.+|||+.
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-~i~~~~idi~~d~~---~-~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC-GERFAYVDILQNPD---I-RAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc-CCCceEEEecCCHH---H-HHHHHHHhCCCCCCeEEECCEE
Confidence 44566777788888854 5999999999999764 33344677654421 1 2344444577888889999998
Q ss_pred eeCCCCHHHHH
Q 018527 332 LSGEQDLSDLA 342 (354)
Q Consensus 332 y~G~r~l~~La 342 (354)
.-|-.++.+|.
T Consensus 81 IGG~ddl~~l~ 91 (115)
T PRK10824 81 VGGCDIVIEMY 91 (115)
T ss_pred EcChHHHHHHH
Confidence 88776666654
No 126
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.25 E-value=0.0005 Score=70.08 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=48.0
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhccCc--eeECCCCCCCCCcchhHhhhh------CCCCccceeeECCEEeeCCCCH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSD------AKIEGFPTWVINGQVLSGEQDL 338 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~~l~--yVeC~~~g~~~~~~~~~lC~~------~~I~gyPTw~inG~~y~G~r~l 338 (354)
.+++|+.+|||||++.|.++.+. .++ +||.+++.... ...+...+ .|.+..|+.+|||+...|-.++
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~---gi~~~~idi~~~~~~~--~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN---DIPFTQISLDDDVKRA--EFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC---CCCeEEEECCCChhHH--HHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 47899999999999999999874 455 57776442110 00011222 4778999999999988887666
Q ss_pred HH
Q 018527 339 SD 340 (354)
Q Consensus 339 ~~ 340 (354)
.+
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 54
No 127
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.20 E-value=0.0016 Score=56.87 Aligned_cols=36 Identities=17% Similarity=-0.026 Sum_probs=26.1
Q ss_pred hhHHHHHHHhcccCeEEEecCCCHHHHHHHHH-HhHH
Q 018527 254 PFALSLAKHLHAIGAKMYGAFWCSHCLEQKQM-FGSE 289 (354)
Q Consensus 254 ~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~-fgk~ 289 (354)
+.+++.|+.-.+.=..+|++.||++|+++++. |.+.
T Consensus 13 eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~ 49 (130)
T cd02960 13 EEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHK 49 (130)
T ss_pred HHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCH
Confidence 44555666655555778999999999999885 5443
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=97.13 E-value=0.0013 Score=61.42 Aligned_cols=82 Identities=15% Similarity=0.308 Sum_probs=57.8
Q ss_pred hHHHHHHHhcccCeEEE--ec---CCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeE
Q 018527 255 FALSLAKHLHAIGAKMY--GA---FWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (354)
Q Consensus 255 ~~~~la~~L~~~g~k~Y--gA---~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i 327 (354)
....+.+.+++..+.+| |. ||||+|++.|.++.+. .++| +|-..+. . -+..+=+..|-..+|...|
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---~i~y~~~DI~~d~--~--~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS---GVKYETYNIFEDP--D--LREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc---CCCEEEEEcCCCH--H--HHHHHHHHhCCCCCCeEEE
Confidence 45566777788888888 32 5999999999999874 4554 4444321 1 1233334457788999999
Q ss_pred CCEEeeCCCCHHHHHH
Q 018527 328 NGQVLSGEQDLSDLAK 343 (354)
Q Consensus 328 nG~~y~G~r~l~~La~ 343 (354)
||+.+-|-.++.+|.+
T Consensus 175 ~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 175 NGELIGGHDIIKELYE 190 (204)
T ss_pred CCEEEcChHHHHHHHH
Confidence 9999988888777764
No 129
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0008 Score=64.66 Aligned_cols=69 Identities=23% Similarity=0.435 Sum_probs=49.3
Q ss_pred HHHHhcccC----eEEEecCCCHHHHHHHHHHhHHHhccC----ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--C
Q 018527 259 LAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAVKQL----NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--N 328 (354)
Q Consensus 259 la~~L~~~g----~k~YgA~WCpHC~~qk~~fgk~A~~~l----~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--n 328 (354)
+-..|...| ++-|.|.||+-|++..|.|...+-++- -.||.+. ..+....+||+..||++. |
T Consensus 12 f~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~--------c~~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 12 FQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDE--------CRGTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred HHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHH--------hhchhhhcCcccCceEEEEec
Confidence 334455555 445669999999999999998775553 2566543 345567799999999876 8
Q ss_pred CEE---eeCC
Q 018527 329 GQV---LSGE 335 (354)
Q Consensus 329 G~~---y~G~ 335 (354)
|++ ++|.
T Consensus 84 g~kid~~qGA 93 (288)
T KOG0908|consen 84 GVKIDQIQGA 93 (288)
T ss_pred CeEeeeecCC
Confidence 874 6665
No 130
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.05 E-value=0.00016 Score=68.71 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=54.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh------ccCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--EeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV------KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--VLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~------~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--~y~G~r~ 337 (354)
..||||||||.|++.++.|..-|. .++.|||.+.+. -+--.+=+...||.-- +|+ +|+|.|+
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np--------gLsGRF~vtaLptIYHvkDGeFrrysgaRd 114 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP--------GLSGRFLVTALPTIYHVKDGEFRRYSGARD 114 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc--------ccceeeEEEecceEEEeeccccccccCccc
Confidence 568999999999999999976431 236689987642 3333377888999553 886 8999999
Q ss_pred HHHHHHHhCC
Q 018527 338 LSDLAKASGF 347 (354)
Q Consensus 338 l~~La~~sg~ 347 (354)
-+++..+.-+
T Consensus 115 k~dfisf~~~ 124 (248)
T KOG0913|consen 115 KNDFISFEEH 124 (248)
T ss_pred chhHHHHHHh
Confidence 9988776655
No 131
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.01 E-value=0.017 Score=61.32 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=51.1
Q ss_pred EEecCCCHHHHHHHH-HHhHHH--h--ccC--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE---CCE---EeeCCC
Q 018527 270 MYGAFWCSHCLEQKQ-MFGSEA--V--KQL--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ---VLSGEQ 336 (354)
Q Consensus 270 ~YgA~WCpHC~~qk~-~fgk~A--~--~~l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i---nG~---~y~G~r 336 (354)
-|+|.||-.||+.|+ .|.+.. . +.. =.+|-++| +.++.++=+++|+-|-||.++ +|+ ...|..
T Consensus 480 DfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~----~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~ 555 (569)
T COG4232 480 DFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAN----DPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFL 555 (569)
T ss_pred eeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCC----CHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCccee
Confidence 355999999999987 575421 1 122 25676654 234678899999999999887 454 478888
Q ss_pred CHHHHHHHh
Q 018527 337 DLSDLAKAS 345 (354)
Q Consensus 337 ~l~~La~~s 345 (354)
+.+.+.++.
T Consensus 556 ~a~~~~~~l 564 (569)
T COG4232 556 TADAFLEHL 564 (569)
T ss_pred cHHHHHHHH
Confidence 888887764
No 132
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.98 E-value=0.0033 Score=57.78 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=48.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-cCc--eeECCCCCCC-----CCcchhHhhhhCCC--CccceeeE---CCE----
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPDGYR-----KGTKIAKACSDAKI--EGFPTWVI---NGQ---- 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-~l~--yVeC~~~g~~-----~~~~~~~lC~~~~I--~gyPTw~i---nG~---- 330 (354)
++.|-|.|||+|++..+.+.+-+.+ .+. -|..+.++.. -+.+...+-+.+++ .++||-++ ||+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 7777799999999998877664322 232 2443322100 00012345667784 69999554 675
Q ss_pred EeeCCCCHHHHHHH
Q 018527 331 VLSGEQDLSDLAKA 344 (354)
Q Consensus 331 ~y~G~r~l~~La~~ 344 (354)
.+.|..+.++|.+.
T Consensus 153 ~~~G~~~~~~L~~~ 166 (181)
T PRK13728 153 LLQGATDAAGFMAR 166 (181)
T ss_pred EEECCCCHHHHHHH
Confidence 37899998888654
No 133
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.98 E-value=0.0024 Score=49.15 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=44.3
Q ss_pred EEEecCCCHHHHHHHHHHhHHH---hcc--CceeECCCCCCC--CC----------------------cchhHhhhhCCC
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEA---VKQ--LNYVECFPDGYR--KG----------------------TKIAKACSDAKI 319 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A---~~~--l~yVeC~~~g~~--~~----------------------~~~~~lC~~~~I 319 (354)
.+|..+.||||++..+.+.+.. ..+ +.++.....+.+ .. .+..++.++.||
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999887641 122 334444433221 00 012356677899
Q ss_pred CccceeeECCEEeeCC
Q 018527 320 EGFPTWVINGQVLSGE 335 (354)
Q Consensus 320 ~gyPTw~inG~~y~G~ 335 (354)
+|.||+++||++|.|.
T Consensus 82 ~g~Pt~v~~~~~~~~~ 97 (98)
T cd02972 82 TGTPTFVVNGEKYSGA 97 (98)
T ss_pred CCCCEEEECCEEcCCC
Confidence 9999999999777664
No 134
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.95 E-value=0.00087 Score=54.60 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=32.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh---ccCceeECCCCCCCCCcchhHhhhhCCCCcccee
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV---KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTW 325 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~---~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw 325 (354)
+.+|.++|||+|+++.+.+.+.+. .++..|...++. . .+..+..+++++.+||+.
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~-~--~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGE-K--AEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCC-H--HHHHHHHHHhCCCCCcEE
Confidence 556679999999999988866321 223333222111 1 123456777777777764
No 135
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.93 E-value=0.0024 Score=66.41 Aligned_cols=86 Identities=17% Similarity=0.311 Sum_probs=66.4
Q ss_pred hhHHHHHHHh-cccCeEEEecCCCHHHHHHHHHHhHHHhc--cCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeEC
Q 018527 254 PFALSLAKHL-HAIGAKMYGAFWCSHCLEQKQMFGSEAVK--QLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (354)
Q Consensus 254 ~~~~~la~~L-~~~g~k~YgA~WCpHC~~qk~~fgk~A~~--~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in 328 (354)
+..++..+.| +...+++|-.+.||||.+..+.+.+.+.. ++. -||... ++++..+++|.+.|+.+||
T Consensus 106 ~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~--------~~~~~~~~~v~~VP~~~i~ 177 (515)
T TIGR03140 106 EGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL--------FQDEVEALGIQGVPAVFLN 177 (515)
T ss_pred HHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh--------CHHHHHhcCCcccCEEEEC
Confidence 4555666666 46679999999999999999999876543 232 244332 5688999999999999999
Q ss_pred CE-EeeCCCCHHHHHHHhCC
Q 018527 329 GQ-VLSGEQDLSDLAKASGF 347 (354)
Q Consensus 329 G~-~y~G~r~l~~La~~sg~ 347 (354)
|+ .++|..+.+++.+..+-
T Consensus 178 ~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 178 GEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred CcEEEecCCCHHHHHHHHhh
Confidence 86 68999999999877653
No 136
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.80 E-value=0.003 Score=59.64 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=33.7
Q ss_pred hhHhhhhCCCCccceeeE-CCEEeeCCCCHHHHHHHhC
Q 018527 310 IAKACSDAKIEGFPTWVI-NGQVLSGEQDLSDLAKASG 346 (354)
Q Consensus 310 ~~~lC~~~~I~gyPTw~i-nG~~y~G~r~l~~La~~sg 346 (354)
+.+++++.||+|.||+++ ||+...|.++.++|.++..
T Consensus 191 ~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~~L~~~l~ 228 (232)
T PRK10877 191 HYALGVQFGVQGTPAIVLSNGTLVPGYQGPKEMKAFLD 228 (232)
T ss_pred hHHHHHHcCCccccEEEEcCCeEeeCCCCHHHHHHHHH
Confidence 567899999999999998 9999999999999998764
No 137
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.55 E-value=0.0037 Score=49.42 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=36.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHH--hc---cCc--eeECCCCCC--------C---------CCcchhHhhhhCCCCccc
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEA--VK---QLN--YVECFPDGY--------R---------KGTKIAKACSDAKIEGFP 323 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A--~~---~l~--yVeC~~~g~--------~---------~~~~~~~lC~~~~I~gyP 323 (354)
+.+|.|+||++|++.-+.+.+.. .+ ++. +|.++.+.. + ......++-++++|+++|
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 56788999999999987765521 12 222 455553300 0 001245677888999999
Q ss_pred eeeE---CCE
Q 018527 324 TWVI---NGQ 330 (354)
Q Consensus 324 Tw~i---nG~ 330 (354)
|..+ ||+
T Consensus 85 ~~~lld~~G~ 94 (95)
T PF13905_consen 85 TLVLLDPDGK 94 (95)
T ss_dssp EEEEEETTSB
T ss_pred EEEEECCCCC
Confidence 9776 564
No 138
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.32 E-value=0.0095 Score=45.59 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=44.8
Q ss_pred ecCCCHHHHHHHHHHhHHHhc---cCceeECCCCCCCCCcchhHhhhhCC--CCccceeeE--CCE---EeeC--CCCHH
Q 018527 272 GAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDGYRKGTKIAKACSDAK--IEGFPTWVI--NGQ---VLSG--EQDLS 339 (354)
Q Consensus 272 gA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g~~~~~~~~~lC~~~~--I~gyPTw~i--nG~---~y~G--~r~l~ 339 (354)
+++|||+|++.++.+.+.+.+ .+..+.++.... ..+....++ +..+|+..+ ||+ .+.| ....+
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 114 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE-----NPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKE 114 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC-----ChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccCCHH
Confidence 499999999999998764322 244444443211 246677778 999999875 554 3444 55556
Q ss_pred HHHHHhC
Q 018527 340 DLAKASG 346 (354)
Q Consensus 340 ~La~~sg 346 (354)
.+....+
T Consensus 115 ~~~~~~~ 121 (127)
T COG0526 115 ALIDALG 121 (127)
T ss_pred HHHHHhc
Confidence 5555443
No 139
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.24 E-value=0.011 Score=53.62 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=44.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc-cCc--eeECCCC----------CCC--CCcchhHhhhhCCCCccceeeE---CC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK-QLN--YVECFPD----------GYR--KGTKIAKACSDAKIEGFPTWVI---NG 329 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~-~l~--yVeC~~~----------g~~--~~~~~~~lC~~~~I~gyPTw~i---nG 329 (354)
+.+|.|.|||.|+++.+.+.+...+ ..+ .|..+.. +.+ .-....++.+++++.+.|+-.+ +|
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G 157 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDG 157 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCC
Confidence 5567799999999998888663221 222 2331100 000 0001246778899999998554 57
Q ss_pred E-EeeCC-CCHHHHHHHh
Q 018527 330 Q-VLSGE-QDLSDLAKAS 345 (354)
Q Consensus 330 ~-~y~G~-r~l~~La~~s 345 (354)
+ ++.|. .+.+++.++.
T Consensus 158 ~I~~~g~~~~~~~le~ll 175 (189)
T TIGR02661 158 KIRAKGLTNTREHLESLL 175 (189)
T ss_pred eEEEccCCCCHHHHHHHH
Confidence 6 56665 3445555544
No 140
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.21 E-value=0.013 Score=66.64 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=49.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhc----cCceeECC-----CCCCCCC----------------cchhHhhhhCCCCcc
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECF-----PDGYRKG----------------TKIAKACSDAKIEGF 322 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~----~l~yVeC~-----~~g~~~~----------------~~~~~lC~~~~I~gy 322 (354)
++.|-|.|||+|++..|.+.+.+.+ .+..|.+. ++..... ....++.++++|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~i 503 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSSW 503 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCcc
Confidence 4566799999999999988764321 13333331 1100000 012356778999999
Q ss_pred ceeeE---CCE---EeeCCCCHHHHHHHh
Q 018527 323 PTWVI---NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 323 PTw~i---nG~---~y~G~r~l~~La~~s 345 (354)
||.++ ||+ ++.|+...++|.++.
T Consensus 504 Pt~ilid~~G~iv~~~~G~~~~~~l~~~l 532 (1057)
T PLN02919 504 PTFAVVSPNGKLIAQLSGEGHRKDLDDLV 532 (1057)
T ss_pred ceEEEECCCCeEEEEEecccCHHHHHHHH
Confidence 99776 676 689998877766554
No 141
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.17 E-value=0.03 Score=52.50 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhc---cCceeECCCCC---CCCCcchhHhhhhCCCCccceeeE---C
Q 018527 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK---QLNYVECFPDG---YRKGTKIAKACSDAKIEGFPTWVI---N 328 (354)
Q Consensus 258 ~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~---~l~yVeC~~~g---~~~~~~~~~lC~~~~I~gyPTw~i---n 328 (354)
.|.+.=++.|..||+...||+|++|.+....-+.+ .+-+|..|-.+ ..+......+.++.||+-+|+.++ +
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 34444466778888899999999999876553322 23356654110 000011356788999999999776 4
Q ss_pred C-E---EeeCCCCHHHHHH
Q 018527 329 G-Q---VLSGEQDLSDLAK 343 (354)
Q Consensus 329 G-~---~y~G~r~l~~La~ 343 (354)
+ + .-.|..++++|.+
T Consensus 194 ~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELED 212 (215)
T ss_pred CCeEEEEeeecCCHHHHHH
Confidence 4 4 3589999999986
No 142
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.02 E-value=0.016 Score=49.29 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=47.3
Q ss_pred hHHHHHHHhcccC-eEEEecC-CCHHHHHHHHHHhHHHh----ccCceeECCCCCCCCC---------------cchhHh
Q 018527 255 FALSLAKHLHAIG-AKMYGAF-WCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKG---------------TKIAKA 313 (354)
Q Consensus 255 ~~~~la~~L~~~g-~k~YgA~-WCpHC~~qk~~fgk~A~----~~l~yVeC~~~g~~~~---------------~~~~~l 313 (354)
....|++ ++..- +++|-+. |||+|+++.+.+.+.+. +.+..|-+..+....- ....++
T Consensus 19 ~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 97 (146)
T PF08534_consen 19 KPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGAL 97 (146)
T ss_dssp EEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHH
T ss_pred CEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHH
Confidence 3444555 33333 5555577 99999999987665321 2244433332211000 012367
Q ss_pred hhhCCCC---------ccceeeE---CCE---EeeCCCC
Q 018527 314 CSDAKIE---------GFPTWVI---NGQ---VLSGEQD 337 (354)
Q Consensus 314 C~~~~I~---------gyPTw~i---nG~---~y~G~r~ 337 (354)
.++.+++ ++|++.+ ||+ ++.|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 98 AKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 7888988 9999876 786 4566666
No 143
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.86 E-value=0.014 Score=51.79 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=47.2
Q ss_pred eEEEecC------CCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCC----CccceeeECCEEeeCCCC
Q 018527 268 AKMYGAF------WCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI----EGFPTWVINGQVLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~------WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I----~gyPTw~inG~~y~G~r~ 337 (354)
+++|..+ +||+|++.|.+|.+. ...+.++|-+.+... +.++-+..+- ...|..+|||+..-|..+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-~V~~~e~DVs~~~~~----~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-RVKFDERDVSMDSGF----REELRELLGAELKAVSLPRVFVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-CCcEEEEECCCCHHH----HHHHHHHhCCCCCCCCCCEEEECCEEEecHHH
Confidence 6789999 999999999999864 222334555433211 2233333333 689999999988887777
Q ss_pred HHHHHH
Q 018527 338 LSDLAK 343 (354)
Q Consensus 338 l~~La~ 343 (354)
+.+|.+
T Consensus 77 l~~L~e 82 (147)
T cd03031 77 VLRLNE 82 (147)
T ss_pred HHHHHH
Confidence 666543
No 144
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.59 E-value=0.034 Score=46.61 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhH
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk 288 (354)
+.|+.+-.+.=+.+|.|.|||.|+++.+.+.+
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHH
Confidence 45555423333556679999999999887765
No 145
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.26 E-value=0.039 Score=48.35 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=36.6
Q ss_pred CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCCHHHHHHHhC
Q 018527 294 LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLSDLAKASG 346 (354)
Q Consensus 294 l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~l~~La~~sg 346 (354)
+..||.+.+ .++++++||+++||+.+ ||+ ++.|.++.++|.++..
T Consensus 72 ~akVDiD~~--------~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~ 121 (132)
T PRK11509 72 VAIADLEQS--------EAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMR 121 (132)
T ss_pred EEEEECCCC--------HHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHH
Confidence 445776643 59999999999999887 997 6899999999987654
No 146
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.14 E-value=0.019 Score=50.95 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=17.5
Q ss_pred eEEEecCCCHHHHHHHHHHhH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk 288 (354)
+..|.|.|||-|++..|.+.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 557789999999999887754
No 147
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.82 E-value=0.031 Score=47.93 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=30.9
Q ss_pred hHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 311 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
.+.+++.||+|.||.+|||+.+.|..++++|.++.
T Consensus 126 ~~~~~~~~i~~tPt~~inG~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 126 SQLARQLGITGTPTFFINGKYVVGPYTIEELKELI 160 (162)
T ss_dssp HHHHHHHT-SSSSEEEETTCEEETTTSHHHHHHHH
T ss_pred HHHHHHcCCccccEEEECCEEeCCCCCHHHHHHHH
Confidence 46788899999999999999999999999998864
No 148
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.071 Score=48.37 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=51.7
Q ss_pred eEEEecCCCHHHHHHHHH-HhHH----Hhcc-Cc--eeECC---CCCCCCC-----cchhHhhhhCCCCccceeeE---C
Q 018527 268 AKMYGAFWCSHCLEQKQM-FGSE----AVKQ-LN--YVECF---PDGYRKG-----TKIAKACSDAKIEGFPTWVI---N 328 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~-fgk~----A~~~-l~--yVeC~---~~g~~~~-----~~~~~lC~~~~I~gyPTw~i---n 328 (354)
..||+.+.|+.|.++|.. |.+. +.+. +. +++-. +...+.+ .+..+++++++++++||.+. +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 569999999999999864 4332 2221 22 12211 1001111 22458999999999999887 4
Q ss_pred CE---EeeCCCCHHHHHHHhCC
Q 018527 329 GQ---VLSGEQDLSDLAKASGF 347 (354)
Q Consensus 329 G~---~y~G~r~l~~La~~sg~ 347 (354)
|+ ..+|=...|+......|
T Consensus 126 Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 126 GKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred CCEEEecCCCCCHHHHHHHHHH
Confidence 55 47888888888766555
No 149
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=94.43 E-value=0.17 Score=38.11 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=38.2
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeEC-CEE
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 331 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in-G~~ 331 (354)
++|+.+|||+|++.+-.+.+. ......++.+... + ..+.-+...-...|+++.+ |+.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-gl~~e~~~v~~~~--~---~~~~~~~np~~~vP~L~~~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-GITVELREVELKN--K---PAEMLAASPKGTVPVLVLGNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-CCCcEEEEeCCCC--C---CHHHHHHCCCCCCCEEEECCCcE
Confidence 589999999999999888752 2234456665431 1 1244344567789999985 764
No 150
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=93.87 E-value=0.074 Score=47.07 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.7
Q ss_pred hHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHhC
Q 018527 311 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 346 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~sg 346 (354)
.+..++.||.|.||++|||+.+.|...++.|++..+
T Consensus 157 ~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~~~l~ 192 (192)
T cd03022 157 TEEAIARGVFGVPTFVVDGEMFWGQDRLDMLEEALA 192 (192)
T ss_pred HHHHHHcCCCcCCeEEECCeeecccccHHHHHHHhC
Confidence 356778899999999999999999999999987654
No 151
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=93.70 E-value=0.049 Score=49.12 Aligned_cols=70 Identities=21% Similarity=0.440 Sum_probs=42.3
Q ss_pred HHhc-ccCeEEEecCCCHHHHHH----HHHHhHHHhc--c--CceeECCCCCCC-----------------CCcchhHhh
Q 018527 261 KHLH-AIGAKMYGAFWCSHCLEQ----KQMFGSEAVK--Q--LNYVECFPDGYR-----------------KGTKIAKAC 314 (354)
Q Consensus 261 ~~L~-~~g~k~YgA~WCpHC~~q----k~~fgk~A~~--~--l~yVeC~~~g~~-----------------~~~~~~~lC 314 (354)
++|+ ++.+.+|+|.|||-|++. |++|.+...+ . +-+|.=+.++.. .+....+++
T Consensus 29 ~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 29 EALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred HhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 3444 444668999999999986 5566542211 1 113332221100 011356889
Q ss_pred hhCCCCccceeeE---CCE
Q 018527 315 SDAKIEGFPTWVI---NGQ 330 (354)
Q Consensus 315 ~~~~I~gyPTw~i---nG~ 330 (354)
++++|.+.|+.++ ||+
T Consensus 109 ~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKPDGT 127 (157)
T ss_pred HhcccCcCceeEEecCCCC
Confidence 9999999999998 674
No 152
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.61 E-value=0.039 Score=47.49 Aligned_cols=62 Identities=23% Similarity=0.425 Sum_probs=30.3
Q ss_pred ecCCCHHHHHHHHHHhHH---HhccCceeECCC--CC-CCCCcchhHh--hhhCCCCccceeeE--CCEEeeCC
Q 018527 272 GAFWCSHCLEQKQMFGSE---AVKQLNYVECFP--DG-YRKGTKIAKA--CSDAKIEGFPTWVI--NGQVLSGE 335 (354)
Q Consensus 272 gA~WCpHC~~qk~~fgk~---A~~~l~yVeC~~--~g-~~~~~~~~~l--C~~~~I~gyPTw~i--nG~~y~G~ 335 (354)
|-+|||.|.+.+|...+. +.+...+|.|.. .. +.+ +.... =.+.+|++.||++. ++++..+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkd--p~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKD--PNNPFRTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC---TTSHHHH--CC---SSSEEEECTSS-EEEHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCC--CCCCceEcceeeeeecceEEEECCCCccchh
Confidence 457999999999887663 112233455532 11 111 01111 12489999999876 44565554
No 153
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=93.56 E-value=0.45 Score=33.75 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=39.3
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEee
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 333 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~ 333 (354)
++|+.++||+|++.+-.+... ......++++.+.... .+.=+..+-..+|++..+|+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~~----~~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-GLPYELVPVDLGEGEQ----EEFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEeCCCCCCC----HHHHhcCCCCCCCEEEECCEEEE
Confidence 689999999999998888753 2234456665432111 12223356677999999987653
No 154
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.31 E-value=0.14 Score=48.97 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=31.2
Q ss_pred hHhhhhCCCCccceeeE-C--CE--EeeCCCCHHHHHHHhCC
Q 018527 311 AKACSDAKIEGFPTWVI-N--GQ--VLSGEQDLSDLAKASGF 347 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~i-n--G~--~y~G~r~l~~La~~sg~ 347 (354)
.++.++.||+|.||+++ | |+ ...|..+.++|.++.|-
T Consensus 209 ~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 209 QKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 34677899999999998 5 65 68999999999998873
No 155
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=93.18 E-value=0.24 Score=42.96 Aligned_cols=32 Identities=19% Similarity=0.025 Sum_probs=21.9
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHhHH
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~ 289 (354)
++|+++-.+.=+.+|-|.||| |.++.+.+.+.
T Consensus 15 v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l 46 (152)
T cd00340 15 VSLSKYKGKVLLIVNVASKCG-FTPQYEGLEAL 46 (152)
T ss_pred EeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHH
Confidence 456554333334567799999 99988877653
No 156
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.90 E-value=0.23 Score=40.52 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=21.4
Q ss_pred HHHHHHHhcccCeEEEecC-CCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIGAKMYGAF-WCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~-WCpHC~~qk~~fgk 288 (354)
.+.|.+.-.+.-+.+|.+. |||+|+++-+.+.+
T Consensus 17 ~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~ 50 (124)
T PF00578_consen 17 TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNE 50 (124)
T ss_dssp EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHH
T ss_pred EEEHHHHCCCcEEEEEeCccCccccccchhHHHH
Confidence 3555555333445555566 99999998877765
No 157
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.77 E-value=0.66 Score=44.76 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=52.1
Q ss_pred cccCeEEEecCCCHHHHHHHHHHhHHHhc-cCceeECCCCCCC-----CCcchhHhhhhCCCCccceeeE---C-CE---
Q 018527 264 HAIGAKMYGAFWCSHCLEQKQMFGSEAVK-QLNYVECFPDGYR-----KGTKIAKACSDAKIEGFPTWVI---N-GQ--- 330 (354)
Q Consensus 264 ~~~g~k~YgA~WCpHC~~qk~~fgk~A~~-~l~yVeC~~~g~~-----~~~~~~~lC~~~~I~gyPTw~i---n-G~--- 330 (354)
++.|..||.-.-||+|++|.+....-+.+ .+..+..+-||.. +........++.||+-+|+.++ + ++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 56788888899999999999876543221 2443222223211 0111234567899999999776 3 33
Q ss_pred EeeCCCCHHHHHH
Q 018527 331 VLSGEQDLSDLAK 343 (354)
Q Consensus 331 ~y~G~r~l~~La~ 343 (354)
.-.|..+.++|.+
T Consensus 223 v~~G~iS~deL~~ 235 (248)
T PRK13703 223 LSYGFITQDDLAK 235 (248)
T ss_pred EeeccCCHHHHHH
Confidence 3589999999975
No 158
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.71 E-value=0.39 Score=40.19 Aligned_cols=88 Identities=11% Similarity=0.005 Sum_probs=47.0
Q ss_pred HHHHHHhcccCeEEEe-cCCCHHHHHHHHHHhHHHh----ccCceeECCCCCCCCC---------------cchhHhhhh
Q 018527 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEAV----KQLNYVECFPDGYRKG---------------TKIAKACSD 316 (354)
Q Consensus 257 ~~la~~L~~~g~k~Yg-A~WCpHC~~qk~~fgk~A~----~~l~yVeC~~~g~~~~---------------~~~~~lC~~ 316 (354)
+.+++.-.+.-+.+|. +.|||.|.++.+.+.+... +.+..|-...+....- ....++.++
T Consensus 16 ~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 95 (140)
T cd03017 16 VSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKA 95 (140)
T ss_pred EeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHH
Confidence 4455433333355555 6899999988777654321 1122222211100000 002356777
Q ss_pred CCCCcc---------ceeeE---CCE---EeeCCCCHHHHHHH
Q 018527 317 AKIEGF---------PTWVI---NGQ---VLSGEQDLSDLAKA 344 (354)
Q Consensus 317 ~~I~gy---------PTw~i---nG~---~y~G~r~l~~La~~ 344 (354)
+|+... |+..+ ||+ .+.|...-+++.+.
T Consensus 96 ~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 96 YGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred hCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 888888 77655 565 57787766666553
No 159
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.66 E-value=0.34 Score=42.68 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHH-hcccCeEEEecCCCHHHHHHHHHHhHHHh----ccCce--eECCCC------CCC--------CC-------c
Q 018527 257 LSLAKH-LHAIGAKMYGAFWCSHCLEQKQMFGSEAV----KQLNY--VECFPD------GYR--------KG-------T 308 (354)
Q Consensus 257 ~~la~~-L~~~g~k~YgA~WCpHC~~qk~~fgk~A~----~~l~y--VeC~~~------g~~--------~~-------~ 308 (354)
++|... -.+.-+.+|.+.|||+|.++.+.+.+... +++.. |.+++. ... .+ .
T Consensus 17 v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred EeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 455553 23344667889999999988777755321 13443 333321 000 00 0
Q ss_pred chhHhhhhCCCCccceeeE---CCE-EeeC
Q 018527 309 KIAKACSDAKIEGFPTWVI---NGQ-VLSG 334 (354)
Q Consensus 309 ~~~~lC~~~~I~gyPTw~i---nG~-~y~G 334 (354)
....+.++++|.+.|+..+ ||+ +|.|
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 1235677889999998666 566 4554
No 160
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=92.62 E-value=0.59 Score=45.27 Aligned_cols=85 Identities=7% Similarity=0.001 Sum_probs=55.1
Q ss_pred HHHHhcccCeEEEecCCCHHHHHHHHHHhH---HHhccCceeECCCCCC---CCCcchhHhhhhCCCCccceeeE---C-
Q 018527 259 LAKHLHAIGAKMYGAFWCSHCLEQKQMFGS---EAVKQLNYVECFPDGY---RKGTKIAKACSDAKIEGFPTWVI---N- 328 (354)
Q Consensus 259 la~~L~~~g~k~YgA~WCpHC~~qk~~fgk---~A~~~l~yVeC~~~g~---~~~~~~~~lC~~~~I~gyPTw~i---n- 328 (354)
+.+.=++.|..||.-.-||+|+++.+.... +..-.+-.|..|-.+. .+......+.++.||+-+|+.++ +
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 333336678888889999999999986543 3221233455542210 00011245788899999999776 4
Q ss_pred CE---EeeCCCCHHHHHH
Q 018527 329 GQ---VLSGEQDLSDLAK 343 (354)
Q Consensus 329 G~---~y~G~r~l~~La~ 343 (354)
++ .=.|..+.++|.+
T Consensus 225 ~~~~pv~~G~iS~deL~~ 242 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKE 242 (256)
T ss_pred CcEEEEeeccCCHHHHHH
Confidence 33 2489999999975
No 161
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=92.57 E-value=0.63 Score=40.98 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhHh-cC-CCCCCCCCccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh
Q 018527 68 GIGGVGFLETTYLSYLKL-TN-SDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (354)
Q Consensus 68 ~La~iGll~S~YLt~~k~-~~-~~~~C~i~~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~ 133 (354)
.+++.|+.++.|-.+... +. ..+.|. ..+|+++ .| +++|++.+.+-+++|.+++++.+..
T Consensus 70 ~~a~~G~~iA~~hv~lQ~~p~~~~~~Cg--~g~Ca~~---~~-~fl~lsiP~wSl~aF~~i~~l~~~~ 131 (135)
T PRK00611 70 PLALVGFGIAIYQVCLQEIPGMTLDICG--RVSCSTK---LF-LFGFITMPMASAAAFCAIACLLVLA 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCC--CCCCccc---ch-hcccccHHHHHHHHHHHHHHHHHHH
Confidence 558999999999887765 33 246786 3589998 44 7899999999999999887766553
No 162
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.35 E-value=0.16 Score=44.82 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.1
Q ss_pred hHhhhhCCCCccceeeECCE-EeeCCCCHHHHHHHh
Q 018527 311 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 345 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~-~y~G~r~l~~La~~s 345 (354)
.+...+.||.|.||+++||+ .+.|.+.+++|.+..
T Consensus 157 ~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 45678899999999999999 899999999998753
No 163
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.30 E-value=0.11 Score=45.05 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=41.2
Q ss_pred CChhHHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhc----cCceeECCCCCCCCCcchhHhhhhCCCCccceeeE
Q 018527 252 SSPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVK----QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI 327 (354)
Q Consensus 252 S~~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~----~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i 327 (354)
|.+....++..-++..+..++-+|||.|.+.-|.|.|-|.. ++.++-=+. |... ..+.-. .|.+..||.++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~---~~el-~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDE---NKEL-MDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHH---HHHH-TTTTTT--SS--SSEEEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecC---ChhH-HHHHHh-CCCeecCEEEE
Confidence 34445566666666788899999999999999999885321 133443222 2111 112222 78999999888
Q ss_pred ---CCEE--eeCCCC
Q 018527 328 ---NGQV--LSGEQD 337 (354)
Q Consensus 328 ---nG~~--y~G~r~ 337 (354)
+|+. .=|+|.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 4553 356655
No 164
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.21 E-value=0.26 Score=44.71 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=39.1
Q ss_pred ChhHHHHHHHhcccCeEEEecCCCHHHHHHHH-HHhHHHh-ccCc--eeE--CCCCCCCCCcchhHhhhhC--------C
Q 018527 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQ-MFGSEAV-KQLN--YVE--CFPDGYRKGTKIAKACSDA--------K 318 (354)
Q Consensus 253 ~~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~-~fgk~A~-~~l~--yVe--C~~~g~~~~~~~~~lC~~~--------~ 318 (354)
++.+.+.|+.-.+.=+...|..||.-||.+.. .|..... +.++ ||. .+.+. .+++-..+ |
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree------~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE------RPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-------HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc------CccHHHHHHHHHHHhcC
Confidence 45778888888887788899999999999985 6755322 2232 322 22321 23443333 7
Q ss_pred CCccceeeE---CCE
Q 018527 319 IEGFPTWVI---NGQ 330 (354)
Q Consensus 319 I~gyPTw~i---nG~ 330 (354)
..|||+=++ +|+
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 889999665 676
No 165
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=91.99 E-value=0.75 Score=39.02 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=53.9
Q ss_pred hHHHHHHHhcccCeEEEecC----CCHHHHHHHHHHhHHHh-ccCc----eeECCCCCCCCCcchhHhhhhCCCCcccee
Q 018527 255 FALSLAKHLHAIGAKMYGAF----WCSHCLEQKQMFGSEAV-KQLN----YVECFPDGYRKGTKIAKACSDAKIEGFPTW 325 (354)
Q Consensus 255 ~~~~la~~L~~~g~k~YgA~----WCpHC~~qk~~fgk~A~-~~l~----yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw 325 (354)
++++.||+=.+.-++++-.+ ||.-|+ +.|..+.. +.++ .+-++-++. .-.+++...++++||++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~---~~l~~~~v~~~ln~~fv~w~~dv~~~----eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCR---NTLCAPEVIEYINTRMLFWACSVAKP----EGYRVSQALRERTYPFL 80 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHH---HHcCCHHHHHHHHcCEEEEEEecCCh----HHHHHHHHhCCCCCCEE
Confidence 44555655445556666688 888884 45544322 1121 233333221 13679999999999998
Q ss_pred eE----CCE-----EeeCCCCHHHHHHHhC
Q 018527 326 VI----NGQ-----VLSGEQDLSDLAKASG 346 (354)
Q Consensus 326 ~i----nG~-----~y~G~r~l~~La~~sg 346 (354)
.+ +++ +.+|..+.++|.+...
T Consensus 81 ~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 81 AMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred EEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 76 443 6999999999987653
No 166
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.51 E-value=0.57 Score=34.63 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=37.0
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeE-CCEE
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 331 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i-nG~~ 331 (354)
++|+.++||+|++.+-.+... .-....++.+..+... +..+.-+...-...|++++ ||+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-~l~~~~~~v~~~~~~~--~~~~~~~~~p~~~vP~l~~~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-GIDVPLVTVDLAAGEQ--RSPEFLAKNPAGTVPVLELDDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-CCCceEEEeecccCcc--CCHHHHhhCCCCCCCEEEeCCCCE
Confidence 789999999999999988753 2223346665421111 1223334345567899998 5543
No 167
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.42 E-value=0.25 Score=41.30 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=24.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 302 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~ 302 (354)
+++|+-++||+|++.++++.+. .....++|-..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH-GVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCceEEecccCC
Confidence 4799999999999999999863 222334555443
No 168
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=91.15 E-value=0.71 Score=34.56 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=35.6
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeEC-CEEee
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLS 333 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in-G~~y~ 333 (354)
+.|+.++||+|++.+..+... .-....++.+.+. . ...+ +..+-...|+.+.| |+...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~-gl~~~~~~~~~~~--~---~~~~-~~~~~~~vP~L~~~~~~~l~ 60 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLK-NIPVEQIILQNDD--E---ATPI-RMIGAKQVPILEKDDGSFMA 60 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHc-CCCeEEEECCCCc--h---HHHH-HhcCCCccCEEEeCCCeEee
Confidence 579999999999999988753 2223345554321 1 1111 23344568999886 65543
No 169
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.08 E-value=0.25 Score=41.18 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=31.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~ 318 (354)
+++|+-|||+.|++.++.+.+. .....++|-..+.... ....++.++.|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-~i~~~~~di~~~p~s~-~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-GVAYTFHDYRKDGLDA-ATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCCeEEEecccCCCCH-HHHHHHHHHhC
Confidence 4799999999999999999763 2233345544433222 12445666655
No 170
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=90.99 E-value=0.96 Score=33.81 Aligned_cols=61 Identities=18% Similarity=-0.020 Sum_probs=38.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
.++|+.++||+|++.+-..... ......++++... ++.+..+.-+...-...|+++.+|..
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~-gi~~e~~~i~~~~--~~~~~~~~~~~~p~~~vP~l~~~~~~ 61 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKAL-GLELNLKEVNLMK--GEHLKPEFLKLNPQHTVPTLVDNGFV 61 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHc-CCCCEEEEecCcc--CCcCCHHHHhhCcCCCCCEEEECCEE
Confidence 3789999999999988877652 2234456665421 11113444444555679999888754
No 171
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.98 E-value=0.46 Score=43.77 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=22.7
Q ss_pred HHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHH
Q 018527 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~ 289 (354)
.+.|.+.-.+.=+..|-|.|||.|++..+.+.+.
T Consensus 31 ~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l 64 (199)
T PTZ00056 31 TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRL 64 (199)
T ss_pred EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHH
Confidence 3456554333335577899999999877766553
No 172
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.95 E-value=0.24 Score=41.59 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=38.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeE-CCEEeeC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQVLSG 334 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i-nG~~y~G 334 (354)
+++|+-++||+|++.+.++.+. .....+||...++... ....++.++.|. |+=.++- +|+.|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~~~~-~el~~l~~~~~~-~~~~lin~~~~~~k~ 65 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-GIEYQFIDIGEDGPTR-EELLDILSLLED-GIDPLLNTRGQSYRA 65 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-CCceEEEecCCChhhH-HHHHHHHHHcCC-CHHHheeCCCcchhh
Confidence 4689999999999999999863 2334456665443222 123445555553 2222332 6666554
No 173
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.94 E-value=0.29 Score=40.09 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=26.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG 303 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g 303 (354)
+++|+-++||.|++.+.++.+. .....++|-..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-~i~~~~idi~~~~ 35 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-GIEYEFIDYLKEP 35 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-CCCcEEEeeccCC
Confidence 4789999999999999999863 3334456665443
No 174
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=90.40 E-value=1.1 Score=42.76 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=23.0
Q ss_pred HHHHHHHhcccCeEEEecCCCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk 288 (354)
.+.|++.-.+.=+..|-|.|||.|.++.+.+.+
T Consensus 91 ~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 91 DVALSKFKGKVLLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHH
Confidence 456666544333556779999999988777655
No 175
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=89.87 E-value=0.93 Score=41.78 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=52.9
Q ss_pred hcccCeEEEecCCCHHHHHHHHHHhHHHhccCce--------eECCCCC-----C--------CCCc--------chhHh
Q 018527 263 LHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--------VECFPDG-----Y--------RKGT--------KIAKA 313 (354)
Q Consensus 263 L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--------VeC~~~g-----~--------~~~~--------~~~~l 313 (354)
..+.-++-|-|-||+-|+.-.|++.+-+.+.++. |+-+.+. . ..+. ++..+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 3455577777999999999999887654333322 4422110 0 0000 12345
Q ss_pred hhhCCCCcccee--eE--CCE---EeeCCCCHHHHHHHh
Q 018527 314 CSDAKIEGFPTW--VI--NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 314 C~~~~I~gyPTw--~i--nG~---~y~G~r~l~~La~~s 345 (354)
..+++++++|+= +| +|+ ++.|..+.+++.++.
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 678999999664 55 576 799999998887654
No 176
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=89.77 E-value=1.6 Score=38.48 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhHh-c---CCCCCCCCCccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh
Q 018527 66 CAGIGGVGFLETTYLSYLKL-T---NSDAFCPIGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (354)
Q Consensus 66 i~~La~iGll~S~YLt~~k~-~---~~~~~C~i~~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~ 133 (354)
.+.+++.|+.+++|-.+.+. + +..+.|. ..+|+++.-.+ ++|++.+.+-+++|.+++++.+..
T Consensus 69 ~~l~a~~G~~iA~~h~~lq~~p~~~~~~~~Cg--~~~Ca~~~~~~---~g~lsiP~wSl~~F~~i~~l~~~~ 135 (139)
T PRK03113 69 SLPISSIGACISLYHYAIQKIPFFSAAAASCG--RVPCTGEYINW---FGFVTIPFLALIAFITIAVCSFIV 135 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccCCCCC--CCChhhhhHHH---hccCcHHHHHHHHHHHHHHHHHHH
Confidence 34577999999999887764 3 2235676 34898865443 456999999999999988876653
No 177
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=0.29 Score=42.51 Aligned_cols=69 Identities=22% Similarity=0.400 Sum_probs=39.1
Q ss_pred CeEEEecC-------CCHHHHHHHHHHhHH---HhccCceeECCCCCCCCC--cchhHhhhhCCC-CccceeeE-C--CE
Q 018527 267 GAKMYGAF-------WCSHCLEQKQMFGSE---AVKQLNYVECFPDGYRKG--TKIAKACSDAKI-EGFPTWVI-N--GQ 330 (354)
Q Consensus 267 g~k~YgA~-------WCpHC~~qk~~fgk~---A~~~l~yVeC~~~g~~~~--~~~~~lC~~~~I-~gyPTw~i-n--G~ 330 (354)
-+.|+|.- |||.|.+..|.+.+. |.+++.+|-|+... +.. ++....=++.++ .+.||+.. + ++
T Consensus 29 fvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~-rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~ 107 (128)
T KOG3425|consen 29 FVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN-RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQ 107 (128)
T ss_pred EEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC-CCcccCCCCccccCCCceeecceeeEEcCccc
Confidence 35566654 999999999999762 23345555554321 110 011223344566 99999665 3 23
Q ss_pred EeeCCC
Q 018527 331 VLSGEQ 336 (354)
Q Consensus 331 ~y~G~r 336 (354)
+..|.|
T Consensus 108 rL~~~q 113 (128)
T KOG3425|consen 108 RLDGLQ 113 (128)
T ss_pred cchHhH
Confidence 555543
No 178
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=89.21 E-value=1.1 Score=38.82 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=20.9
Q ss_pred HHHHHHhcccCeEEEecCCCHHHHHHHHHHh
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSHCLEQKQMFG 287 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpHC~~qk~~fg 287 (354)
+.|+++-.+.=+++|-|.|||.|++.-+.+.
T Consensus 15 ~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~ 45 (153)
T TIGR02540 15 VSLEKYRGKVSLVVNVASECGFTDQNYRALQ 45 (153)
T ss_pred ecHHHhCCCEEEEEEeCCCCCchhhhHHHHH
Confidence 5566654333356778999999988766443
No 179
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=88.97 E-value=0.62 Score=39.11 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHH--h--ccCceeECCCCCCCCCcchhHhhhhCCCCccce
Q 018527 257 LSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEA--V--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPT 324 (354)
Q Consensus 257 ~~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A--~--~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPT 324 (354)
+.+.+...... +.+|-+.|||.|+++.+.+.+.. . +.+..|-+..+... ...+..++.++ .||.
T Consensus 15 ~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~~~~-~~p~ 84 (149)
T cd02970 15 VTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE---KLEAFDKGKFL-PFPV 84 (149)
T ss_pred EchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHhcCC-CCeE
Confidence 44555554333 34556999999999988886632 1 22444444333211 12345666665 3664
No 180
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=88.74 E-value=1.2 Score=33.68 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=34.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeEC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in 328 (354)
++.|+.+.||.|++.+..+.+. .++| ++.++. + ..++ +..+-...|+.+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~---gi~y~~~~~~~~--~----~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH---GIPYEVVEVNPV--S----RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC---CCceEEEECCch--h----HHHH-HHhCCCccCEEEEC
Confidence 5789999999999999887652 4544 444321 1 1232 44566789999986
No 181
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=88.71 E-value=2.1 Score=31.77 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
.+.|+.++||.|++.+-...+. .-....++-+.+ +. ..+.-+...-...|+++.+|+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~-gi~~~~~~v~~~--~~---~~~~~~~~p~~~vP~l~~~~~~ 58 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEK-GVSVEIIDVDPD--NP---PEDLAELNPYGTVPTLVDRDLV 58 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHc-CCccEEEEcCCC--CC---CHHHHhhCCCCCCCEEEECCEE
Confidence 3689999999999999888653 212223443332 11 2344444566789999887754
No 182
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=88.40 E-value=0.63 Score=41.58 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=30.2
Q ss_pred hHhhhhCCCCccceeeECCE-EeeCCCCHHHHHHHh
Q 018527 311 AKACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAKAS 345 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~-~y~G~r~l~~La~~s 345 (354)
.+..++.||.|.||.+|||+ ...|.++.+.+.+..
T Consensus 165 ~~~a~~~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 45677899999999999987 679999999998764
No 183
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.17 E-value=2 Score=32.70 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=41.4
Q ss_pred EEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEee
Q 018527 270 MYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLS 333 (354)
Q Consensus 270 ~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~ 333 (354)
.||.++||+|++..-.+... .-...++++++... ..+.-+...-.-.|+.+.||+.+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~-~i~~~~~~v~~~~~-----~~~~~~~~p~~~vPvL~~~g~~l~ 58 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEK-GIPYELVPVDPEEK-----RPEFLKLNPKGKVPVLVDDGEVLT 58 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHH-TEEEEEEEEBTTST-----SHHHHHHSTTSBSSEEEETTEEEE
T ss_pred CCCcCCChHHHHHHHHHHHc-CCeEEEeccCcccc-----hhHHHhhcccccceEEEECCEEEe
Confidence 48999999999998887753 22344566665421 246666677788999999988655
No 184
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.63 E-value=3.6 Score=32.24 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=52.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh-c--cCceeECCCCCCCCCcchhHhhhhCCCCccceeeECC-------EEeeCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV-K--QLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING-------QVLSGEQD 337 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~-~--~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG-------~~y~G~r~ 337 (354)
+.+||-+-|+=|.+.++...+... . .+..||-+.| .++-.+++. -.|-..++| +...+..+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d--------~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED--------PELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT--------HHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC--------HHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 579999999999999999986321 2 2557888743 367778885 699999977 57889999
Q ss_pred HHHHHHHh
Q 018527 338 LSDLAKAS 345 (354)
Q Consensus 338 l~~La~~s 345 (354)
.++|.++.
T Consensus 73 ~~~L~~~L 80 (81)
T PF05768_consen 73 EEQLRAWL 80 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998763
No 185
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.32 E-value=0.94 Score=39.15 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=24.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 302 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~ 302 (354)
+++|+-+|||.|++.+.++.+. .....++|-..+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCcEEeeccCC
Confidence 5799999999999999999763 222334555443
No 186
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=86.24 E-value=2.4 Score=37.50 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=21.3
Q ss_pred HHHHHHHhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WCpHC~~qk~~fgk 288 (354)
...|.+...+.-+.+|. +.|||+|..+.+.+.+
T Consensus 21 ~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 21 EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHH
Confidence 45565543333344443 8999999998887755
No 187
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.85 E-value=0.86 Score=39.63 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.3
Q ss_pred hHhhhhCCCCccceeeECCEEeeCCCCHH
Q 018527 311 AKACSDAKIEGFPTWVINGQVLSGEQDLS 339 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~~y~G~r~l~ 339 (354)
.+.+++.||.|.||.+|||+.+.+.++.+
T Consensus 133 ~~~~~~~gi~gTPt~iInG~~~~~~~~~~ 161 (178)
T cd03019 133 EKLAKKYKITGVPAFVVNGKYVVNPSAIG 161 (178)
T ss_pred HHHHHHcCCCCCCeEEECCEEEEChhhcc
Confidence 46788999999999999999877776554
No 188
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=1.1 Score=41.70 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=32.7
Q ss_pred hhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHhC
Q 018527 310 IAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASG 346 (354)
Q Consensus 310 ~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~sg 346 (354)
..++.++.||+|-||.++||+.|.|..++++|.+...
T Consensus 204 ~~~~a~~~gv~gTPt~~v~~~~~~g~~~~~~l~~~i~ 240 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIVNGKLVPGLPDLDELKAIID 240 (244)
T ss_pred HHHHHHhcCCCcCCeEEECCeeecCCCCHHHHHHHHH
Confidence 4567888999999999999999999999999988653
No 189
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.37 E-value=1.3 Score=37.05 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=25.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 302 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~ 302 (354)
+++||-++|+.|++.++.|.+. .....++|-..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCceEEEecCCC
Confidence 5799999999999999999863 233445665443
No 190
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=5 Score=38.49 Aligned_cols=65 Identities=17% Similarity=0.367 Sum_probs=43.8
Q ss_pred HHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhcc------CceeECCCCCCCCCcchhHhhhhCCCCc------ccee
Q 018527 258 SLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQ------LNYVECFPDGYRKGTKIAKACSDAKIEG------FPTW 325 (354)
Q Consensus 258 ~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~------l~yVeC~~~g~~~~~~~~~lC~~~~I~g------yPTw 325 (354)
++.+.=+..=...|.|-|-|.|.+..|-|.+...+. ...||-.- .++..++++|.- .||.
T Consensus 138 el~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--------fpd~a~kfris~s~~srQLPT~ 209 (265)
T KOG0914|consen 138 ELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--------FPDVAAKFRISLSPGSRQLPTY 209 (265)
T ss_pred HhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--------CcChHHheeeccCcccccCCeE
Confidence 334333333455666999999999999998864332 34687653 346677777754 8998
Q ss_pred eE--CCE
Q 018527 326 VI--NGQ 330 (354)
Q Consensus 326 ~i--nG~ 330 (354)
++ +|+
T Consensus 210 ilFq~gk 216 (265)
T KOG0914|consen 210 ILFQKGK 216 (265)
T ss_pred EEEccch
Confidence 87 665
No 191
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=83.70 E-value=1.1 Score=38.00 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHhcccCeEEEecCC-CHHHHHHHHHHhHH
Q 018527 256 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 289 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~W-CpHC~~qk~~fgk~ 289 (354)
.+.|++.-.+.-+.+|-+.| ||+|+++.+.+.+.
T Consensus 18 ~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~ 52 (143)
T cd03014 18 EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKE 52 (143)
T ss_pred EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHH
Confidence 45666643334455555766 79999999888764
No 192
>PRK13190 putative peroxiredoxin; Provisional
Probab=83.28 E-value=3.7 Score=37.77 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=51.0
Q ss_pred HHHHHHHhcccCeE-EEecCCCHHHHHHHHHHhHHH--hc--cCc--eeECCCCCC----------CCC---------cc
Q 018527 256 ALSLAKHLHAIGAK-MYGAFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY----------RKG---------TK 309 (354)
Q Consensus 256 ~~~la~~L~~~g~k-~YgA~WCpHC~~qk~~fgk~A--~~--~l~--yVeC~~~g~----------~~~---------~~ 309 (354)
.+.|.++-.+.-+. +|=+.|||.|..+.+.|.+.. ++ .+. -|.++.... +.+ ..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~ 98 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI 98 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC
Confidence 46677653332233 577999999999877775421 11 111 222221000 000 01
Q ss_pred hhHhhhhCCCC------ccceeeE---CCEE-------eeCCCCHHHHHHHh
Q 018527 310 IAKACSDAKIE------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 345 (354)
Q Consensus 310 ~~~lC~~~~I~------gyPTw~i---nG~~-------y~G~r~l~~La~~s 345 (354)
..++++++|+. .+|+-+| ||+. ..+.|+.+|+.+..
T Consensus 99 ~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 99 DKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred ChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 24788888984 5888555 6752 15679999997765
No 193
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=82.74 E-value=3.5 Score=37.79 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=48.0
Q ss_pred HHHHHHHhcccCeEEEe-cCCCHHHHHHHHHHhHHHhc--c--Cc--eeECCCCCC----------CCCc-------chh
Q 018527 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEAVK--Q--LN--YVECFPDGY----------RKGT-------KIA 311 (354)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WCpHC~~qk~~fgk~A~~--~--l~--yVeC~~~g~----------~~~~-------~~~ 311 (354)
.++|.+...+.-+.+|. +.|||.|..+.+.|.+...+ + +. -|..++... ..+. ...
T Consensus 23 ~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~ 102 (187)
T PRK10382 23 EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG 102 (187)
T ss_pred EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCch
Confidence 33455443333344444 99999999988777553211 1 11 111111000 0000 135
Q ss_pred HhhhhCCC----Ccc--ce-eeE--CCE-----Ee--eCCCCHHHHHHHh
Q 018527 312 KACSDAKI----EGF--PT-WVI--NGQ-----VL--SGEQDLSDLAKAS 345 (354)
Q Consensus 312 ~lC~~~~I----~gy--PT-w~i--nG~-----~y--~G~r~l~~La~~s 345 (354)
++++++|+ .|. |+ .+| +|+ .+ ...|+.+++.+..
T Consensus 103 ~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 103 ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred HHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 78999998 466 87 445 575 12 3447888888765
No 194
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.46 E-value=1.6 Score=37.88 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=25.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDG 303 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g 303 (354)
+++|+-++|+.|++.+..+.+. .....++|-..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-CCCeEEEEeeCCc
Confidence 5799999999999999999763 2223345554443
No 195
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=81.50 E-value=5.3 Score=36.63 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=22.7
Q ss_pred HHHHHHhcccCe--EEEecCCCHHHHHHHHHHhHH
Q 018527 257 LSLAKHLHAIGA--KMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 257 ~~la~~L~~~g~--k~YgA~WCpHC~~qk~~fgk~ 289 (354)
+.|++...+.-+ .+|-|.|||.|..+.+.|.+.
T Consensus 17 ~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~ 51 (203)
T cd03016 17 IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKL 51 (203)
T ss_pred EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence 566655432322 368899999999998777553
No 196
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.49 E-value=5.5 Score=31.47 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeEC-CEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in-G~~ 331 (354)
.+.|+.+.||+|++.+-..... .-....++.+... . ..+.-+...-...|++++| |+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-gl~~~~~~v~~~~--~---~~~~~~~np~~~vPvL~~~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-NIPHEVININLKD--K---PDWFLEKNPQGKVPALEIDEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCCCeEEEeCCCC--C---cHHHHhhCCCCCcCEEEECCCCE
Confidence 7899999999999998877652 2223345654321 1 2234444566779999997 654
No 197
>PTZ00256 glutathione peroxidase; Provisional
Probab=80.96 E-value=3.2 Score=37.34 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=21.5
Q ss_pred HHHHHHHhcccCe--EEEecCCCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIGA--KMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g~--k~YgA~WCpHC~~qk~~fgk 288 (354)
.+.|++. +-..+ .+|-|.|||.|.+..+.+.+
T Consensus 32 ~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~ 65 (183)
T PTZ00256 32 LVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVE 65 (183)
T ss_pred EEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHH
Confidence 4556554 33332 35569999999998777764
No 198
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.85 E-value=6.8 Score=28.76 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCC-CCCCCcchhHhhhhCCCCccceeeECCEEe
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 332 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~-g~~~~~~~~~lC~~~~I~gyPTw~inG~~y 332 (354)
++|+-+.||+|++.+-.+... ......++.+.. +.++ ..+.-+...-...|+++.+|+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-~~~~~~~~i~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL-GIPYEWVEVDILKGETR---TPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc-CCCcEEEEecCCCcccC---CHHHHHhCCCCCCCEEEECCEEE
Confidence 689999999999988877652 222334554431 1111 22333334456789999988643
No 199
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=80.36 E-value=1.6 Score=40.11 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=26.4
Q ss_pred hHhhhhCCCCccceeeECCEEeeCCC---------CHHHHHHHhCC
Q 018527 311 AKACSDAKIEGFPTWVINGQVLSGEQ---------DLSDLAKASGF 347 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~~y~G~r---------~l~~La~~sg~ 347 (354)
.+..++.||+|.||.+|||+.+-+.+ +.+++.+..+|
T Consensus 157 ~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~~~~~~i~~ 202 (207)
T PRK10954 157 EKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQQYADVVKF 202 (207)
T ss_pred HHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHHHHHHHHHH
Confidence 35567889999999999998654433 45666665543
No 200
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=79.41 E-value=5.4 Score=30.50 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=34.9
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeEC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVIN 328 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in 328 (354)
.++|+.++||+|++.+....+. .++| ++..++. . +..+.=+...-...|+.+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~---gi~y~~~~v~~~~-~---~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL---ELDVILYPCPKGS-P---KRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc---CCcEEEEECCCCh-H---HHHHHHHhCCCCcccEEEeC
Confidence 4789999999999998877653 4554 6654321 1 12233333455679999873
No 201
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=78.61 E-value=1.8 Score=36.64 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=22.3
Q ss_pred hHHHHHHHhc-ccCeE-EEecCCCHHHHHHHHHHhH
Q 018527 255 FALSLAKHLH-AIGAK-MYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 255 ~~~~la~~L~-~~g~k-~YgA~WCpHC~~qk~~fgk 288 (354)
..+.|.+... +.-+. ||.+.|||.|.++.+.+.+
T Consensus 18 ~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred CEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHH
Confidence 3566766544 22233 4558999999998777754
No 202
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.44 E-value=2.9 Score=33.73 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=47.1
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCC--------cchhHhhhhCCCCccceeeE-CCEEeeC
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKG--------TKIAKACSDAKIEGFPTWVI-NGQVLSG 334 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~--------~~~~~lC~~~~I~gyPTw~i-nG~~y~G 334 (354)
++|||--||.|...++.+.+. .-+.+|||-+....|=. .+.-+..+++|-=|.|.+.. ||+..-|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 799999999999999999875 23456899886654321 11234566678888999888 6776655
No 203
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=77.24 E-value=2.4 Score=37.65 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=22.9
Q ss_pred HHHHHHHhcccCeEEEecCC-CHHHHHHHHHHhHH
Q 018527 256 ALSLAKHLHAIGAKMYGAFW-CSHCLEQKQMFGSE 289 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~W-CpHC~~qk~~fgk~ 289 (354)
.+.|++.-.+.-+..|.+.| ||.|.++.+.|.+.
T Consensus 36 ~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 36 DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQE 70 (167)
T ss_pred EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHH
Confidence 45666643333355666878 99999998888664
No 204
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=76.18 E-value=3.4 Score=34.91 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=30.1
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCC
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~ 318 (354)
++++|+-|.|++|++.+..+.+. .....++|-..++...+ ...++.++.|
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~-gi~~~~~d~~~~p~s~~-eL~~~l~~~g 50 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAA-GHEVEVRDLLTEPWTAE-TLRPFFGDLP 50 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCCcEEeehhcCCCCHH-HHHHHHHHcC
Confidence 46899999999999999988753 22233344433332211 1344555544
No 205
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=75.97 E-value=3.4 Score=35.52 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=19.1
Q ss_pred HHHHHHHhcccC-eE-EEecCCCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIG-AK-MYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g-~k-~YgA~WCpHC~~qk~~fgk 288 (354)
.+.|... +..- +. ||...|||+|..+.+.+.+
T Consensus 22 ~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~ 55 (154)
T PRK09437 22 QVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRD 55 (154)
T ss_pred EEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHH
Confidence 3566654 4333 33 4445799999887665543
No 206
>PRK01749 disulfide bond formation protein B; Provisional
Probab=75.89 E-value=16 Score=33.33 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhHhcCCC-CCCCC------------------C-ccCcccccccccccccCCchhHHHHHHHHHHHH
Q 018527 69 IGGVGFLETTYLSYLKLTNSD-AFCPI------------------G-GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAV 128 (354)
Q Consensus 69 La~iGll~S~YLt~~k~~~~~-~~C~i------------------~-~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~ 128 (354)
.++.|+.+++|-...+....+ ..|+. . ..+|+++. -++||++.+.+-+++|.++++
T Consensus 81 ~al~G~~iA~~hv~~q~~~~~~~~C~~~~~~~~~lpl~~~l~~lf~~~~~C~~~~----w~~lGlSmp~wsll~F~~~~~ 156 (176)
T PRK01749 81 SAWKGLQLALEHTDYQLNPSPFNTCDFFVEFPSWLPLDKWLPSVFVASGDCSERQ----WQFLGLEMPQWLVVIFAAYLV 156 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCcccccccCCHHHHHHHhcCCCCCCCCcc----hhhcccCHHHHHHHHHHHHHH
Confidence 367899999887655543232 57863 1 35788664 458999999999999999887
Q ss_pred HH
Q 018527 129 LG 130 (354)
Q Consensus 129 la 130 (354)
++
T Consensus 157 ~~ 158 (176)
T PRK01749 157 VA 158 (176)
T ss_pred HH
Confidence 75
No 207
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.58 E-value=4.3 Score=35.19 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD 302 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~ 302 (354)
+++|+-++|+.|++.+..+.+. .....++|-..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCCeEEEECCCC
Confidence 5799999999999999999763 222334554433
No 208
>PRK02110 disulfide bond formation protein B; Provisional
Probab=72.57 E-value=23 Score=31.99 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCCCCC-C--------------------ccCcccccccccccccCCchhHHHHHHHHHH
Q 018527 68 GIGGVGFLETTYLSYLKLTNSDAFCPI-G--------------------GASCGDVLNSDYAVVFGVPLPFIGMFAYGLV 126 (354)
Q Consensus 68 ~La~iGll~S~YLt~~k~~~~~~~C~i-~--------------------~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~v 126 (354)
..++.|+..+.|-...+.... ..|.. . ..+|+++ +-++||++.+.+-+++|.++
T Consensus 79 l~a~~G~~ia~~h~~~q~~p~-~~Cg~~~~~~~~~~lpl~~~~~~~f~~~g~C~~~----~w~llGlsmp~wsli~F~~~ 153 (169)
T PRK02110 79 LSALGGIAVAGRHVYIQLNPG-FSCGIDALQPIVDSLPPAKWLPGVFKVDGLCETP----YPPILGLSLPGWALIAFVLI 153 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCCCCcchHHHHhCCHHHHHHHHhcCCCCccCc----CccccccCHHHHHHHHHHHH
Confidence 447899999998888876322 56751 1 1346554 34589999999999998887
Q ss_pred HHHHHH
Q 018527 127 AVLGLL 132 (354)
Q Consensus 127 l~lav~ 132 (354)
+++.+.
T Consensus 154 ~l~~~~ 159 (169)
T PRK02110 154 AVAVAV 159 (169)
T ss_pred HHHHHH
Confidence 766433
No 209
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=71.75 E-value=7.9 Score=35.29 Aligned_cols=90 Identities=8% Similarity=0.040 Sum_probs=51.6
Q ss_pred HHHHHHHhcccCeEEEe-cCCCHHHHHHHHHHhHHH--hc--cCc--eeECCCCCC-------C------CCc-------
Q 018527 256 ALSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGY-------R------KGT------- 308 (354)
Q Consensus 256 ~~~la~~L~~~g~k~Yg-A~WCpHC~~qk~~fgk~A--~~--~l~--yVeC~~~g~-------~------~~~------- 308 (354)
.+.|..+..+..+.+|. +.||++|......|.+.+ .+ .+. -|.+++... . .+.
T Consensus 28 ~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D 107 (199)
T PTZ00253 28 KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLAD 107 (199)
T ss_pred EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEEC
Confidence 46777765555566665 588999998877765532 11 122 233332110 0 000
Q ss_pred chhHhhhhCCCC------ccceeeE---CCEE-----e--eCCCCHHHHHHHh
Q 018527 309 KIAKACSDAKIE------GFPTWVI---NGQV-----L--SGEQDLSDLAKAS 345 (354)
Q Consensus 309 ~~~~lC~~~~I~------gyPTw~i---nG~~-----y--~G~r~l~~La~~s 345 (354)
...++++.+|+. .||+.+| +|+. + .-.|+++++.+..
T Consensus 108 ~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l 160 (199)
T PTZ00253 108 KTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLL 160 (199)
T ss_pred cHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 134788999985 4788665 5651 1 4457888877655
No 210
>PRK04388 disulfide bond formation protein B; Provisional
Probab=70.32 E-value=21 Score=32.27 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhHhc--CCCCCCCC--------------------CccCcccccccccccccCCchhHHHHHHHHH
Q 018527 68 GIGGVGFLETTYLSYLKLT--NSDAFCPI--------------------GGASCGDVLNSDYAVVFGVPLPFIGMFAYGL 125 (354)
Q Consensus 68 ~La~iGll~S~YLt~~k~~--~~~~~C~i--------------------~~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~ 125 (354)
..++.|+.+++|-...+.. +....|.. +..+|+++- =++||++.+.+-+++|.+
T Consensus 78 ~~a~~G~~iA~~h~~lq~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~C~~~~----w~~lGLSmp~wsll~f~~ 153 (172)
T PRK04388 78 IAAGVGMGIAARHVWVQIRPKDMMSSCGPPLSFLSETMGPFEVFRTVLTGTGDCGNID----WRFLGLSMPMWSMVWFVG 153 (172)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCcCChhhhhhhccCHHHHHHHHhCCCCCCCCCc----chhhccCHHHHHHHHHHH
Confidence 5578999999998888763 33456841 124577653 347999999999999998
Q ss_pred HHHHHHHh
Q 018527 126 VAVLGLLL 133 (354)
Q Consensus 126 vl~lav~~ 133 (354)
++++++..
T Consensus 154 l~~l~~~~ 161 (172)
T PRK04388 154 LALWALYA 161 (172)
T ss_pred HHHHHHHH
Confidence 88776653
No 211
>PF07098 DUF1360: Protein of unknown function (DUF1360); InterPro: IPR010773 This entry is represented by Mycobacterium phage PG1, Gp7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of around 115 residues in length. Members of this family are found in Bacillus species and Streptomyces coelicolor, the function of the family is unknown.
Probab=69.94 E-value=10 Score=32.03 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.0
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 018527 177 TCSYCLTSALLSFSLFFIS 195 (354)
Q Consensus 177 lCp~Cl~s~~is~~Lf~lt 195 (354)
-||||+..|+.........
T Consensus 59 sCpwC~gvWvA~~~~~~~v 77 (105)
T PF07098_consen 59 SCPWCTGVWVAAGLAAGYV 77 (105)
T ss_pred cChhHHHHHHHHHHHHHHH
Confidence 7999999998777665443
No 212
>PRK13189 peroxiredoxin; Provisional
Probab=68.71 E-value=11 Score=35.37 Aligned_cols=89 Identities=7% Similarity=-0.006 Sum_probs=50.2
Q ss_pred HHHHHHhcccCe--EEEecCCCHHHHHHHHHHhHHH--hcc--Cc--eeECCCCCC------------CCC-------cc
Q 018527 257 LSLAKHLHAIGA--KMYGAFWCSHCLEQKQMFGSEA--VKQ--LN--YVECFPDGY------------RKG-------TK 309 (354)
Q Consensus 257 ~~la~~L~~~g~--k~YgA~WCpHC~~qk~~fgk~A--~~~--l~--yVeC~~~g~------------~~~-------~~ 309 (354)
+.+.++++..-+ .+|=|.|||.|..+.+.|.+.+ +++ +. -|.++.... ..+ ..
T Consensus 27 ~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~ 106 (222)
T PRK13189 27 IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADD 106 (222)
T ss_pred EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcC
Confidence 566776655433 3678999999998877665532 111 11 233321100 000 01
Q ss_pred hhHhhhhCCCC-------ccceeeE---CCEE-------eeCCCCHHHHHHHh
Q 018527 310 IAKACSDAKIE-------GFPTWVI---NGQV-------LSGEQDLSDLAKAS 345 (354)
Q Consensus 310 ~~~lC~~~~I~-------gyPTw~i---nG~~-------y~G~r~l~~La~~s 345 (354)
..++++++|+. ..|+.+| +|+. ....|+.+++.++.
T Consensus 107 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l 159 (222)
T PRK13189 107 RGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLV 159 (222)
T ss_pred ccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 24678888875 4676554 5651 23678888887765
No 213
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.12 E-value=5.3 Score=33.99 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=17.6
Q ss_pred eEEEecCCCHHHHHHHHHHhH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk 288 (354)
+.+|+.+-||||.++.+.+.+
T Consensus 16 v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 16 VTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp EEEEE-TTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhh
Confidence 679999999999999887765
No 214
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=67.29 E-value=4.6 Score=35.02 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=20.3
Q ss_pred cCeEEEecCCCHHHHHHHHHHhHH
Q 018527 266 IGAKMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 266 ~g~k~YgA~WCpHC~~qk~~fgk~ 289 (354)
.-+..|.-|-||||++..+...+.
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHH
Confidence 347788899999999999988765
No 215
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.05 E-value=7.3 Score=37.22 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=26.9
Q ss_pred HhhhhCCCCccceeeECCE-EeeCCCCHHHHHH
Q 018527 312 KACSDAKIEGFPTWVINGQ-VLSGEQDLSDLAK 343 (354)
Q Consensus 312 ~lC~~~~I~gyPTw~inG~-~y~G~r~l~~La~ 343 (354)
+..++.||+|.||.+++|+ ..+|.++.+.|.+
T Consensus 175 ~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~ 207 (225)
T COG2761 175 AAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLED 207 (225)
T ss_pred HHHHHCCCccCceEEEcCcEeecCCCCHHHHHH
Confidence 4578899999999999554 7999999887764
No 216
>PRK15000 peroxidase; Provisional
Probab=63.74 E-value=21 Score=32.91 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=49.4
Q ss_pred HHHHHHHhcccCe-EEEec-CCCHHHHHHHHHHhHHH--hc--cCc--eeECCCCCCC----------CC----------
Q 018527 256 ALSLAKHLHAIGA-KMYGA-FWCSHCLEQKQMFGSEA--VK--QLN--YVECFPDGYR----------KG---------- 307 (354)
Q Consensus 256 ~~~la~~L~~~g~-k~YgA-~WCpHC~~qk~~fgk~A--~~--~l~--yVeC~~~g~~----------~~---------- 307 (354)
..+|.++.+...+ .+|.+ .|||.|..+.+.|.+.+ ++ .+. -|.++..... .+
T Consensus 25 ~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fplls 104 (200)
T PRK15000 25 KFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVA 104 (200)
T ss_pred eeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEE
Confidence 3566665544433 34445 59999999887775532 11 111 1222210000 00
Q ss_pred cchhHhhhhCCCC------ccceeeE---CCE---E----eeCCCCHHHHHHHh
Q 018527 308 TKIAKACSDAKIE------GFPTWVI---NGQ---V----LSGEQDLSDLAKAS 345 (354)
Q Consensus 308 ~~~~~lC~~~~I~------gyPTw~i---nG~---~----y~G~r~l~~La~~s 345 (354)
....++++++|+. ++|+-++ +|+ . ..-.|+.+|+.+..
T Consensus 105 D~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l 158 (200)
T PRK15000 105 DVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMV 158 (200)
T ss_pred CCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHH
Confidence 0134778889987 7888554 565 1 23348889888765
No 217
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=61.94 E-value=10 Score=31.42 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=16.0
Q ss_pred eEEEe-cCCCHHHHHHHHHHhH
Q 018527 268 AKMYG-AFWCSHCLEQKQMFGS 288 (354)
Q Consensus 268 ~k~Yg-A~WCpHC~~qk~~fgk 288 (354)
+.+|. +.|||+|.++.+.+.+
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHH
Confidence 44444 7899999999877765
No 218
>PLN02412 probable glutathione peroxidase
Probab=61.85 E-value=6 Score=35.11 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=20.4
Q ss_pred HHHHHHHhcccCeEEEecCCCHHHHHHHHHHhH
Q 018527 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk 288 (354)
.+.|+..-.+.=+.+|-|.|||.|+++.+.+.+
T Consensus 21 ~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 21 DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHH
Confidence 345655422222345669999999987666644
No 219
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=58.33 E-value=40 Score=25.09 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=34.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCC--CccceeeECCEEe
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKI--EGFPTWVINGQVL 332 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I--~gyPTw~inG~~y 332 (354)
++.|+.+.||.|.+..-.+... .++| ++-+.. .+ ...-.+.+- ...|+++.+|+..
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~---gl~~~~~~~~~~--~~----~~~~~~~~p~~~~vP~l~~~~~~l 60 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALK---GVPYEYVEEDLG--NK----SELLLASNPVHKKIPVLLHNGKPI 60 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHc---CCCCEEEEeCcc--cC----CHHHHHhCCCCCCCCEEEECCEEe
Confidence 4789999999999998877652 3443 332221 11 122233332 5799999887643
No 220
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=58.18 E-value=3.7 Score=35.41 Aligned_cols=17 Identities=53% Similarity=1.114 Sum_probs=12.6
Q ss_pred eEEEecCCCHHHHHHHHHHhHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~ 289 (354)
-.|||||||. -+.|.+|
T Consensus 93 stmygapwcd-----iqffeqe 109 (159)
T PF14673_consen 93 STMYGAPWCD-----IQFFEQE 109 (159)
T ss_pred ccccCCCccc-----eeehhhc
Confidence 5699999996 3566665
No 221
>COG1495 DsbB Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones]
Probab=57.54 E-value=85 Score=28.47 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhh
Q 018527 148 RLILLGSSTSMAAASAYFLYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (354)
Q Consensus 148 ~w~ll~~s~~~~v~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~ 197 (354)
.|++++. ++++....+-+|+|... --+-|+.|+.--+..+.+.++...
T Consensus 14 ~~ll~~~-~~~~~~~~~al~fq~i~-g~~PC~LC~~QR~~~~~~~~i~~l 61 (170)
T COG1495 14 LWLLLAL-LGLALALLAALYFQYIL-GLEPCPLCLYQRIAMYGLGVILLL 61 (170)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4444433 23444445556766654 478999999988887775554433
No 222
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=57.37 E-value=14 Score=33.85 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.4
Q ss_pred HhhhhCCCCccceeeEC---C--EEeeCCCCHHHHHHHhC
Q 018527 312 KACSDAKIEGFPTWVIN---G--QVLSGEQDLSDLAKASG 346 (354)
Q Consensus 312 ~lC~~~~I~gyPTw~in---G--~~y~G~r~l~~La~~sg 346 (354)
+...+.||.|.||.++| | +.|-|..-++.+.++.+
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l~ 209 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFLG 209 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHhC
Confidence 45677899999999994 4 78999999999988764
No 223
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=56.76 E-value=8 Score=34.96 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=20.9
Q ss_pred HHHHHHhcccCeEEEe-cCCCHHHHHHHHHHhH
Q 018527 257 LSLAKHLHAIGAKMYG-AFWCSHCLEQKQMFGS 288 (354)
Q Consensus 257 ~~la~~L~~~g~k~Yg-A~WCpHC~~qk~~fgk 288 (354)
+.+.+.-.+.-+.+|. +.|||+|.++.+.|.+
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHH
Confidence 4444443333344555 9999999999887754
No 224
>PRK01749 disulfide bond formation protein B; Provisional
Probab=56.29 E-value=95 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHHH
Q 018527 165 FLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (354)
Q Consensus 165 llyil~~~vI~alCp~Cl~s~~is~~Lf~l 194 (354)
-+|+|... --.-|+.|+.--..-+.+.++
T Consensus 29 Al~~Q~~l-gl~PC~LCi~QR~~~~~l~l~ 57 (176)
T PRK01749 29 ALYFQHVM-LLKPCVMCIYERVALFGILGA 57 (176)
T ss_pred HHHHHHHc-CCCCcHhHHHHHHHHHHHHHH
Confidence 35666654 468999999877555444443
No 225
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=55.72 E-value=8.4 Score=32.12 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=21.0
Q ss_pred HHHHHHhcccCeEEEecCCCHH-HHHHHHHHhH
Q 018527 257 LSLAKHLHAIGAKMYGAFWCSH-CLEQKQMFGS 288 (354)
Q Consensus 257 ~~la~~L~~~g~k~YgA~WCpH-C~~qk~~fgk 288 (354)
+.+.+.-.+.-+..|.+.||+. |.++.+.+.+
T Consensus 15 ~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 15 VTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EchHHhCCCEEEEEEEcCCCcccCHHHHHHHHH
Confidence 3444432233466777999997 9988777655
No 226
>PRK02110 disulfide bond formation protein B; Provisional
Probab=55.31 E-value=75 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=19.5
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHHH
Q 018527 165 FLYILSTNFSGATCSYCLTSALLSFSLFFI 194 (354)
Q Consensus 165 llyil~~~vI~alCp~Cl~s~~is~~Lf~l 194 (354)
-+|+|... --.-|+.|+.--...+.+.++
T Consensus 29 Al~~Q~~~-g~~PC~LCi~QR~~~~~i~l~ 57 (169)
T PRK02110 29 ALYLQYVK-GEDPCPLCIIQRYAFLLIAIF 57 (169)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 34666654 578999999877655555443
No 227
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=53.10 E-value=66 Score=25.89 Aligned_cols=34 Identities=6% Similarity=-0.238 Sum_probs=15.7
Q ss_pred HhhhhhhHHHHHHhhHHHHHHHHHHHHHhhhccCC
Q 018527 195 SLKEFSVEEIQKVLGVQLCIASLVVAALSTSYSSI 229 (354)
Q Consensus 195 tl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 229 (354)
...|..|++..+. ..+++-+++++++++++..++
T Consensus 29 ~~fG~~~~~~~~~-l~~~i~~v~~lL~~lGii~DP 62 (78)
T TIGR01598 29 DNFGVLWLSFNRQ-LNAPIAAITTILAVVGIIMDP 62 (78)
T ss_pred HHhcchHHHHHHH-HHHHHHHHHHHHHHHheecCC
Confidence 4456666654432 223333344444555455543
No 228
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=52.21 E-value=9.4 Score=34.40 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=14.6
Q ss_pred hHhhhhCCCCccceeeE-C------CEEeeCCCCHHHHH
Q 018527 311 AKACSDAKIEGFPTWVI-N------GQVLSGEQDLSDLA 342 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~i-n------G~~y~G~r~l~~La 342 (354)
.++.++.+|+++||.++ | |-+.+|..+.+.+.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~ 175 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE 175 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE---------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccccC
Confidence 47899999999999998 4 22677777766654
No 229
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=50.65 E-value=21 Score=32.65 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHH--h--ccC--ceeECCCCC---CCCCcchhHhhh-hCCCCcccee
Q 018527 256 ALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEA--V--KQL--NYVECFPDG---YRKGTKIAKACS-DAKIEGFPTW 325 (354)
Q Consensus 256 ~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A--~--~~l--~yVeC~~~g---~~~~~~~~~lC~-~~~I~gyPTw 325 (354)
.+.|+++-.+.=++.|-|.||+.|++ -+.+.+.. . +.+ --|.|+.-+ ..+.....+.|+ ++++ .||-.
T Consensus 17 ~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~ 94 (183)
T PRK10606 17 VTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMF 94 (183)
T ss_pred EEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeE
Confidence 45676654444456778999999964 44443321 1 122 257775210 001112456676 5777 48886
Q ss_pred e---ECCE
Q 018527 326 V---INGQ 330 (354)
Q Consensus 326 ~---inG~ 330 (354)
. +||+
T Consensus 95 ~k~dvnG~ 102 (183)
T PRK10606 95 SKIEVNGE 102 (183)
T ss_pred EEEccCCC
Confidence 3 3774
No 230
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=49.65 E-value=8.3 Score=35.37 Aligned_cols=21 Identities=19% Similarity=0.676 Sum_probs=17.3
Q ss_pred cCeEEEecCCCHHHHHHHHHH
Q 018527 266 IGAKMYGAFWCSHCLEQKQMF 286 (354)
Q Consensus 266 ~g~k~YgA~WCpHC~~qk~~f 286 (354)
..++.|..+-||||.+..+.+
T Consensus 39 ~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CeEEEEeCCCCccHHHhcccc
Confidence 348889999999999987644
No 231
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=49.35 E-value=28 Score=29.17 Aligned_cols=50 Identities=10% Similarity=0.160 Sum_probs=32.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKI 319 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I 319 (354)
+++||-|-|+-|++++..+.+ +.....++|-..++... ..-..+.++.|+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~-~~i~~~~~di~~~p~t~-~el~~~l~~~g~ 50 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLED-KGIEPEVVKYLKNPPTK-SELEAIFAKLGL 50 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHH-CCCCeEEEeccCCCcCH-HHHHHHHHHcCC
Confidence 479999999999999999976 33334456655444332 224456666553
No 232
>PRK04388 disulfide bond formation protein B; Provisional
Probab=47.78 E-value=1.2e+02 Score=27.26 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhh
Q 018527 165 FLYILSTNFSGATCSYCLTSALLSFSLFFISLKE 198 (354)
Q Consensus 165 llyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~~ 198 (354)
-+|+|... --.-|+.|+.--+.-+.+.++.+.+
T Consensus 26 Aly~Q~~~-gl~PC~LCi~QR~~~~~i~l~~li~ 58 (172)
T PRK04388 26 AIFVQLHL-GLEPCPLCIFQRIAFAALALLFLIG 58 (172)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34666554 4689999998876665555544443
No 233
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=47.60 E-value=33 Score=30.75 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=52.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHhCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKASGF 347 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~sg~ 347 (354)
+..|-.|-|+-|++-.+.... +.=++.-++-++- ...| .++....+-++==|-+|||+-.+|--.+++++++..-
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~-~Gf~Vk~~~~~d~---~alK-~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKA-NGFEVKVVETDDF---LALK-RRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHh-CCcEEEEeecCcH---HHHH-HhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhC
Confidence 667889999999987776653 2223444553321 1111 2244555667788999999999999999999998764
Q ss_pred C
Q 018527 348 P 348 (354)
Q Consensus 348 ~ 348 (354)
+
T Consensus 103 ~ 103 (149)
T COG3019 103 K 103 (149)
T ss_pred C
Confidence 4
No 234
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=45.93 E-value=1.3e+02 Score=28.78 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHhh
Q 018527 166 LYILSTNFSGATCSYCLTSALLSFSLFFISLK 197 (354)
Q Consensus 166 lyil~~~vI~alCp~Cl~s~~is~~Lf~ltl~ 197 (354)
+|+|... .=+-|+.|+.--+..+.+.+..+.
T Consensus 42 ~yfQ~vl-gL~PC~LCIyQR~a~l~i~l~gLI 72 (218)
T PRK04307 42 SFFQIYL-YMAPCEQCVYIRFAMFVMAIGGVI 72 (218)
T ss_pred HHHHHhc-CCCccHHHHHHHHHHHHHHHHHHH
Confidence 4666654 468999999988666666554444
No 235
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.92 E-value=15 Score=34.71 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=18.7
Q ss_pred hHhhhhCCCCccceeeE--CCEEe
Q 018527 311 AKACSDAKIEGFPTWVI--NGQVL 332 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~i--nG~~y 332 (354)
..+|++.++.||||+.+ ||+.|
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceE
Confidence 45899999999999887 89854
No 236
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=40.32 E-value=1.8e+02 Score=25.00 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=46.8
Q ss_pred EEecCCCHHHHHHHHHHhHHHhc---cC--ceeECCCCCCCCCcchhHhhhhCCCC--ccceeeE----CCEE---eeCC
Q 018527 270 MYGAFWCSHCLEQKQMFGSEAVK---QL--NYVECFPDGYRKGTKIAKACSDAKIE--GFPTWVI----NGQV---LSGE 335 (354)
Q Consensus 270 ~YgA~WCpHC~~qk~~fgk~A~~---~l--~yVeC~~~g~~~~~~~~~lC~~~~I~--gyPTw~i----nG~~---y~G~ 335 (354)
+|--.-..+.++.++.+.+.|.+ ++ .++||.. ..++++..|++ .+|+..| +++. ++|.
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~--------~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~ 172 (184)
T PF13848_consen 101 LFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD--------FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGE 172 (184)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT--------THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSC
T ss_pred EEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH--------hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCC
Confidence 34233466777788877665532 23 4788873 24788899998 8999887 3443 2789
Q ss_pred CCHHHHHHHh
Q 018527 336 QDLSDLAKAS 345 (354)
Q Consensus 336 r~l~~La~~s 345 (354)
.+.++|.++.
T Consensus 173 ~~~~~i~~Fl 182 (184)
T PF13848_consen 173 ITPESIEKFL 182 (184)
T ss_dssp GCHHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 9999998875
No 237
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=40.28 E-value=5.5 Score=38.53 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=8.9
Q ss_pred ecCCCHHHHHH
Q 018527 272 GAFWCSHCLEQ 282 (354)
Q Consensus 272 gA~WCpHC~~q 282 (354)
+.+|||+||+|
T Consensus 264 ~t~~CP~CQ~~ 274 (274)
T PRK01103 264 STFFCPRCQKR 274 (274)
T ss_pred CcEECcCCCCc
Confidence 46799999965
No 238
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.55 E-value=6.3 Score=38.69 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.0
Q ss_pred ecCCCHHHHH
Q 018527 272 GAFWCSHCLE 281 (354)
Q Consensus 272 gA~WCpHC~~ 281 (354)
+.+||||||+
T Consensus 264 ~t~~CP~CQ~ 273 (273)
T COG0266 264 STFYCPVCQK 273 (273)
T ss_pred cCEeCCCCCC
Confidence 4679999984
No 239
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.77 E-value=25 Score=33.72 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=45.2
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHh--ccCceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE---EeeCCCCHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ---VLSGEQDLS 339 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~--~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~---~y~G~r~l~ 339 (354)
++.|-|+||.-|+++++.|...+. ++..++--..+ +..++|....|++-|+.+. +|+ +..|....+
T Consensus 21 ~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~------~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 21 VLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAE------EFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhh------hhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 455669999999999999976432 23334433333 2678999999999999776 454 455554433
No 240
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=38.76 E-value=1.5e+02 Score=21.79 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC-CCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHHh
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~-g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~s 345 (354)
+++|+.+-||.|++..-..... ......++.+.. +.++ ..+.-+..--.-.|+++.+|+.. .+-..+.++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-~i~~~~~~~~~~~~~~~---~~~~~~~~P~~~vP~l~~~g~~l---~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-GVDYELVPVDLTKGEHK---SPEHLARNPFGQIPALEDGDLKL---FESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-CCCcEEEEeCccccccC---CHHHHhhCCCCCCCEEEECCEEE---EcHHHHHHHH
Confidence 4789999999999988777642 222334444432 1111 12333445566699998777543 3445555543
No 241
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=37.96 E-value=11 Score=37.62 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCccch
Q 018527 164 YFLYILSTNFSGATCSY 180 (354)
Q Consensus 164 yllyil~~~vI~alCp~ 180 (354)
..+.|+.|+. +-+||.
T Consensus 65 IIiIImlF~R-rLLCPL 80 (381)
T PF05297_consen 65 IIIIIMLFKR-RLLCPL 80 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHH-hhcCcc
Confidence 3445566774 677875
No 242
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=2e+02 Score=31.82 Aligned_cols=65 Identities=17% Similarity=0.417 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhHhcCCC--CCCC--CCccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh
Q 018527 68 GIGGVGFLETTYLSYLKLTNSD--AFCP--IGGASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (354)
Q Consensus 68 ~La~iGll~S~YLt~~k~~~~~--~~C~--i~~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~ 133 (354)
++++.|++.++++.+.-++..+ ..=| ..+-+=.-+|+ +++-++--|+=+.|.+.|.+.+.++++.
T Consensus 125 vlavlgli~~~f~~fil~~snPF~r~~p~~~eGrgLNPlLQ-d~gli~HPPllYlGYvgfsV~fs~avA~ 193 (648)
T COG1138 125 VLAVLGLITAGFLLFILFTSNPFTRLFPVPPEGRGLNPLLQ-DPGLIFHPPLLYLGYVGFSVAFSVAVAG 193 (648)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCCCChhhh-CcccccCCcchhhhHHHHHHHHHHHHHH
Confidence 5677777777777776664321 1111 11345667888 8999999999999999999988877663
No 243
>PLN02412 probable glutathione peroxidase
Probab=37.26 E-value=93 Score=27.47 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=52.6
Q ss_pred cCCCChhHHHHHHHhcccCeEEEecCCCH--------HHHHHHHHHhHHHhccCcee-ECCCCCCCCCcchhHhhh----
Q 018527 249 TTSSSPFALSLAKHLHAIGAKMYGAFWCS--------HCLEQKQMFGSEAVKQLNYV-ECFPDGYRKGTKIAKACS---- 315 (354)
Q Consensus 249 tt~S~~~~~~la~~L~~~g~k~YgA~WCp--------HC~~qk~~fgk~A~~~l~yV-eC~~~g~~~~~~~~~lC~---- 315 (354)
+...-|...++.+.+++.|+.++ +-.|. .-.+.++.|-++..-.++-+ +-++++.+. ...-.
T Consensus 44 c~~e~~~l~~l~~~~~~~g~~vv-gv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~----~~~~~~~~~ 118 (167)
T PLN02412 44 TDSNYKELNVLYEKYKEQGFEIL-AFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNT----APLYKYLKA 118 (167)
T ss_pred hHHHHHHHHHHHHHHhhCCcEEE-EecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCCC----CHHHHHHHh
Confidence 33345778889999999999999 55553 23455666644321123322 112332111 11111
Q ss_pred ------hCCCCccce-eeE--CCE---EeeCCCCHHHHHHH
Q 018527 316 ------DAKIEGFPT-WVI--NGQ---VLSGEQDLSDLAKA 344 (354)
Q Consensus 316 ------~~~I~gyPT-w~i--nG~---~y~G~r~l~~La~~ 344 (354)
..+|.+.|| ++| +|+ ++.|..+.++|.+.
T Consensus 119 ~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~ 159 (167)
T PLN02412 119 EKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKD 159 (167)
T ss_pred hCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHH
Confidence 013777898 555 676 68999998888764
No 244
>PRK10853 putative reductase; Provisional
Probab=37.24 E-value=42 Score=28.49 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=31.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIE 320 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~ 320 (354)
+++||-|-|.-|++.+..+.+. .....++|--.++...+ ...+++++.|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~d~~k~p~s~~-eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-GIDYRFHDYRVDGLDSE-LLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-CCCcEEeehccCCcCHH-HHHHHHHHcCHH
Confidence 5799999999999999999753 22233344333322111 244566666644
No 245
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=36.66 E-value=19 Score=27.79 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=19.9
Q ss_pred CCCHHHHHHH--HHHhHHHhccCceeECCCCCC
Q 018527 274 FWCSHCLEQK--QMFGSEAVKQLNYVECFPDGY 304 (354)
Q Consensus 274 ~WCpHC~~qk--~~fgk~A~~~l~yVeC~~~g~ 304 (354)
.=||.|+.|- ++|.+. .++.|||..-|.
T Consensus 11 A~CP~C~~~Dtl~mW~En---~ve~vECV~CG~ 40 (66)
T COG3529 11 AVCPACQAQDTLAMWREN---NVEIVECVKCGH 40 (66)
T ss_pred CCCcccchhhHHHHHHhc---CCceEehhhcch
Confidence 3599999985 467653 577788876554
No 246
>PRK02935 hypothetical protein; Provisional
Probab=34.85 E-value=24 Score=30.13 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHhHH
Q 018527 275 WCSHCLEQKQMFGSE 289 (354)
Q Consensus 275 WCpHC~~qk~~fgk~ 289 (354)
+||.|++.-++.|+.
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 788888888777774
No 247
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=34.76 E-value=61 Score=26.94 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=30.5
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCC
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAK 318 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~ 318 (354)
+++||-+-|+-|++.+..+.+. ...+.++|-..++... .....+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-~i~~~~~di~~~~~t~-~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-GIEPEIVEYLKTPPTA-AELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCeEEEecccCCcCH-HHHHHHHHHcC
Confidence 4789999999999999888753 3334455554443222 12344555554
No 248
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=34.35 E-value=1.1e+02 Score=31.38 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=41.8
Q ss_pred eEEEecCCCHHHHHHHHH-----HhHHHhcc-----C--ceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE--E
Q 018527 268 AKMYGAFWCSHCLEQKQM-----FGSEAVKQ-----L--NYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ--V 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~-----fgk~A~~~-----l--~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~--~ 331 (354)
+.+|..|==.+=-.||+. +.+.+.+- + .-||-.+ ..+++++.|++.-++.-+ +|+ .
T Consensus 55 ~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K--------d~klAKKLgv~E~~SiyVfkd~~~IE 126 (383)
T PF01216_consen 55 VLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK--------DAKLAKKLGVEEEGSIYVFKDGEVIE 126 (383)
T ss_dssp EEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT--------THHHHHHHT--STTEEEEEETTEEEE
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH--------HHHHHHhcCccccCcEEEEECCcEEE
Confidence 445556665665555554 44444332 2 2466443 469999999999999665 787 6
Q ss_pred eeCCCCHHHHHHHh
Q 018527 332 LSGEQDLSDLAKAS 345 (354)
Q Consensus 332 y~G~r~l~~La~~s 345 (354)
|.|.++.+.|.++.
T Consensus 127 ydG~~saDtLVeFl 140 (383)
T PF01216_consen 127 YDGERSADTLVEFL 140 (383)
T ss_dssp E-S--SHHHHHHHH
T ss_pred ecCccCHHHHHHHH
Confidence 99999999999874
No 249
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.58 E-value=6.5 Score=38.12 Aligned_cols=14 Identities=21% Similarity=0.878 Sum_probs=10.9
Q ss_pred ecCCCHHHHHHHHH
Q 018527 272 GAFWCSHCLEQKQM 285 (354)
Q Consensus 272 gA~WCpHC~~qk~~ 285 (354)
+.+|||+||...++
T Consensus 254 ~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 254 GTHFCPQCQPLRPL 267 (269)
T ss_pred CcEECCCCcCCCCC
Confidence 46899999987653
No 250
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=32.47 E-value=1.3e+02 Score=22.15 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHhHHHhccCc--eeECCCCCCCCCcchhHhhhhCCCCccceeeECCEEeeCCCCHHHHHHH
Q 018527 274 FWCSHCLEQKQMFGSEAVKQLN--YVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 274 ~WCpHC~~qk~~fgk~A~~~l~--yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~ 344 (354)
.|||.|.+.+-.+.. +.++ .++++... ...-...|+.+.+|+.+.+- ..+.++
T Consensus 14 s~sp~~~~v~~~L~~---~~i~~~~~~~~~~~------------~~p~g~vP~l~~~g~~l~es---~~I~~y 68 (72)
T cd03054 14 SLSPECLKVETYLRM---AGIPYEVVFSSNPW------------RSPTGKLPFLELNGEKIADS---EKIIEY 68 (72)
T ss_pred CCCHHHHHHHHHHHh---CCCceEEEecCCcc------------cCCCcccCEEEECCEEEcCH---HHHHHH
Confidence 499999999888764 2454 45655321 11234699999998866443 444444
No 251
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=31.88 E-value=3.2e+02 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Q 018527 164 YFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (354)
Q Consensus 164 yllyil~~~vI~alCp~Cl~s~~is~~Lf~lt 195 (354)
.-+|++... --.-|+.|+.--+..+.+.++.
T Consensus 24 ~aly~q~v~-gl~PC~LCi~QRi~~~~l~l~~ 54 (139)
T PRK03113 24 GSLYFSEIM-KFEPCVLCWYQRIFMYPFVLWL 54 (139)
T ss_pred HHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 335666544 4689999998886666555443
No 252
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=31.74 E-value=1.5e+02 Score=29.73 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=46.4
Q ss_pred hHHHHHHHhccc--CeEEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeECCE
Q 018527 255 FALSLAKHLHAI--GAKMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQ 330 (354)
Q Consensus 255 ~~~~la~~L~~~--g~k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~ 330 (354)
.+.+-+.||..+ ..+.|-=-.||.|-+.+-+..- ..|+| ||.+|-- ++ + -+=-..+-.|...++||
T Consensus 76 hae~~~~~ld~s~L~l~LyQyetCPFCcKVrAFLDy---hgisY~VVEVnpV~-r~-----e-Ik~SsykKVPil~~~Ge 145 (370)
T KOG3029|consen 76 HAETKATRLDGSPLDLVLYQYETCPFCCKVRAFLDY---HGISYAVVEVNPVL-RQ-----E-IKWSSYKKVPILLIRGE 145 (370)
T ss_pred HHHHHHhhcCCCCceEEEEeeccCchHHHHHHHHhh---cCCceEEEEecchh-hh-----h-ccccccccccEEEeccc
Confidence 566778899888 6788988999999999877653 35776 8877631 11 1 11125667899999886
No 253
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=31.14 E-value=1.1e+02 Score=25.00 Aligned_cols=61 Identities=7% Similarity=-0.053 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhC----CCCccceeeECCEEeeCCCCHHHHH
Q 018527 277 SHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDA----KIEGFPTWVINGQVLSGEQDLSDLA 342 (354)
Q Consensus 277 pHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~----~I~gyPTw~inG~~y~G~r~l~~La 342 (354)
-+|++.+.++.. ++++|-|++-+. +++. ..++=+.. +-...|-.+|||+-.-|-.++.+|.
T Consensus 17 ~~~~~v~~lL~~---k~I~f~eiDI~~-d~~~-r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 17 KRQQEVLGFLEA---KKIEFEEVDISM-NEEN-RQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred HHHHHHHHHHHH---CCCceEEEecCC-CHHH-HHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 378888988875 367775555432 1111 12222222 4466777888887665555555544
No 254
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.77 E-value=1.1e+02 Score=31.81 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=57.2
Q ss_pred HHHHHHHhcccC----eEEEecCCCHHHHHHHHHHhHHHh--ccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECC
Q 018527 256 ALSLAKHLHAIG----AKMYGAFWCSHCLEQKQMFGSEAV--KQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVING 329 (354)
Q Consensus 256 ~~~la~~L~~~g----~k~YgA~WCpHC~~qk~~fgk~A~--~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG 329 (354)
..++.++.+.+. +.-|..-.|..|-+.-|-..--+. -+|.-+-.+ | .-+++.-++.+|-+.||...||
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id--G----a~Fq~Evear~IMaVPtvflnG 177 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID--G----ALFQDEVEARNIMAVPTVFLNG 177 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec--c----hhhHhHHHhccceecceEEEcc
Confidence 345566666655 566889999999998887764221 123322221 1 1155667888999999999999
Q ss_pred EE-eeCCCCHHHHHHHh
Q 018527 330 QV-LSGEQDLSDLAKAS 345 (354)
Q Consensus 330 ~~-y~G~r~l~~La~~s 345 (354)
+. -+|-.++|+|..-.
T Consensus 178 e~fg~GRmtleeilaki 194 (520)
T COG3634 178 EEFGQGRMTLEEILAKI 194 (520)
T ss_pred hhhcccceeHHHHHHHh
Confidence 86 48889999986543
No 255
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=30.24 E-value=70 Score=27.37 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=50.2
Q ss_pred HHHHHHHhcccC--eEEEecCCCHHHHHHHHHHhHHHhc-----cCceeECCCCCCCCCcchhHhhhhCCCC----ccce
Q 018527 256 ALSLAKHLHAIG--AKMYGAFWCSHCLEQKQMFGSEAVK-----QLNYVECFPDGYRKGTKIAKACSDAKIE----GFPT 324 (354)
Q Consensus 256 ~~~la~~L~~~g--~k~YgA~WCpHC~~qk~~fgk~A~~-----~l~yVeC~~~g~~~~~~~~~lC~~~~I~----gyPT 324 (354)
.-++.|-|+... .+.| +..=..-..+-.+|.+.|.+ .+.+|||.... ..++|++.+|. -=|.
T Consensus 9 ~KdfKKLLRTr~NVLvLy-~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e------~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLY-SKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE------SRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred hHHHHHHHhhcCcEEEEE-ecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH------HHHHHHHHccCCCCCCCcc
Confidence 445666666655 2345 44444455555677764422 26799998532 46999999998 3333
Q ss_pred -eeE--CCE---EeeCCCCHHHHHHHh
Q 018527 325 -WVI--NGQ---VLSGEQDLSDLAKAS 345 (354)
Q Consensus 325 -w~i--nG~---~y~G~r~l~~La~~s 345 (354)
+.- ||. .|.-..+...+..+.
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~Fl 108 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFL 108 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHh
Confidence 111 674 577677777776654
No 256
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=29.91 E-value=7.9e+02 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=28.8
Q ss_pred ccCcccccccccccccCCchhHHHHHHHHHHHHHHHHh
Q 018527 96 GASCGDVLNSDYAVVFGVPLPFIGMFAYGLVAVLGLLL 133 (354)
Q Consensus 96 ~~sC~~VL~S~ya~vfGiP~sl~Gl~~Y~~vl~lav~~ 133 (354)
..+=.-.|+++|=. +-.|..++|.++|++-+++++..
T Consensus 157 g~~lnP~Lq~~~l~-iHpp~l~lgya~~~v~f~~a~~~ 193 (628)
T TIGR03145 157 GRDLNPMLQDIGLI-FHPPLLYLGYVGFAVNFAMALAA 193 (628)
T ss_pred CCCCCchhcCCChh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678887655 78899999999999988877753
No 257
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.86 E-value=58 Score=28.08 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHhHH
Q 018527 276 CSHCLEQKQMFGSE 289 (354)
Q Consensus 276 CpHC~~qk~~fgk~ 289 (354)
||.|+++-+.+|++
T Consensus 72 CP~C~K~TKmLGr~ 85 (114)
T PF11023_consen 72 CPNCGKQTKMLGRV 85 (114)
T ss_pred CCCCCChHhhhchh
Confidence 77777777777774
No 258
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.96 E-value=1.9e+02 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhccCCC
Q 018527 211 QLCIASLVVAALSTSYSSIQ 230 (354)
Q Consensus 211 ~~~v~~~~~~~~~~~~~~~~ 230 (354)
.++.+++++++++++..+..
T Consensus 47 ~~v~~vl~iL~~~Gii~DPT 66 (84)
T PF04531_consen 47 NIVNAVLTILVILGIINDPT 66 (84)
T ss_pred HHHHHHHHHHHHheeeeCCC
Confidence 34555666666666666643
No 259
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=28.54 E-value=2e+02 Score=33.56 Aligned_cols=19 Identities=5% Similarity=0.044 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHHHHhh
Q 018527 179 SYCLTSALLSFSLFFISLK 197 (354)
Q Consensus 179 p~Cl~s~~is~~Lf~ltl~ 197 (354)
..++...++.+.++++.+.
T Consensus 111 ~~~~~~a~~~~~~~~~L~~ 129 (1094)
T PRK02983 111 SLSIIGFAVHVVAIVLLVL 129 (1094)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3556666666666554443
No 260
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=28.46 E-value=2.1e+02 Score=25.11 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=31.4
Q ss_pred ceeECCCCCCCCCcchhHhhhhCCC--CccceeeE--CCE----Ee--eCCCCHHHHHHHhC
Q 018527 295 NYVECFPDGYRKGTKIAKACSDAKI--EGFPTWVI--NGQ----VL--SGEQDLSDLAKASG 346 (354)
Q Consensus 295 ~yVeC~~~g~~~~~~~~~lC~~~~I--~gyPTw~i--nG~----~y--~G~r~l~~La~~sg 346 (354)
..|-...-|.+. ..++.++++| +.||...+ .|. +| +|..+.+.|.+|+.
T Consensus 58 AeVGikDYGek~---N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 58 AEVGIKDYGEKE---NMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVK 116 (126)
T ss_dssp EEEECBSSSS-C---CHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHH
T ss_pred EEeCcccccchh---HHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHH
Confidence 456555444333 3589999999 66999776 332 68 99999999999864
No 261
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=27.86 E-value=2.4e+02 Score=20.57 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=33.7
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeE-CCEE
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI-NGQV 331 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i-nG~~ 331 (354)
+.|+.+.||.|.+..-.... ....++| ++-+.. ++ ..+.=+...-...|+++. ||+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~-~~~~i~~~~~~~~~~--~~---~~~~~~~~p~~~vP~l~~~~g~~ 61 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHE-TGLGDDVELVLVNPW--SD---DESLLAVNPLGKIPALVLDDGEA 61 (73)
T ss_pred EEecCCCCcHHHHHHHHHHH-hCCCCCcEEEEcCcc--cC---ChHHHHhCCCCCCCEEEECCCCE
Confidence 78999999999988776654 1223443 444322 11 122223345566899986 5643
No 262
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=27.35 E-value=1.3e+02 Score=22.92 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeEC-CEEeeCCCCHHHHHHHh
Q 018527 274 FWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVIN-GQVLSGEQDLSDLAKAS 345 (354)
Q Consensus 274 ~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~in-G~~y~G~r~l~~La~~s 345 (354)
+|||+|.+..-.+... ......++.+..++.. ....+ +...-...|+++.| |+.. .+-..+.++.
T Consensus 14 ~~Sp~~~kv~~~L~~~-~i~~~~~~~~~~~~~~--~~~~~-~~~p~~~vP~L~~~~~~~l---~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHK-GLEYKTVPVEFPDIPP--ILGEL-TSGGFYTVPVIVDGSGEVI---GDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhC-CCCCeEEEecCCCccc--ccccc-cCCCCceeCeEEECCCCEE---eCHHHHHHHH
Confidence 6899999998888752 2223334444321111 01222 33345678999887 6543 3445555554
No 263
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=26.64 E-value=2.1e+02 Score=25.77 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=35.0
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
.+.|+.++||.|++-.-.+.+ ..-....++.+.+ ++ ..+.=+.+--.-.|+++.||..
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e-~gl~~e~~~v~~~--~~---~~~~~~~nP~g~VPvL~~~g~~ 68 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAE-KGVSVEIEQVEKD--NL---PQDLIDLNPYQSVPTLVDRELT 68 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHH-CCCCCEEEeCCcc--cC---CHHHHHhCCCCCCCEEEECCEE
Confidence 689999999999998876654 2222334555432 11 1222222334558999888853
No 264
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=25.86 E-value=2.7e+02 Score=20.97 Aligned_cols=60 Identities=3% Similarity=-0.105 Sum_probs=35.1
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhccCceeECCCC-CCCCCcchhHhhhhCCCCccceeeECCEE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQV 331 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~-g~~~~~~~~~lC~~~~I~gyPTw~inG~~ 331 (354)
+++|+.+.||.|++..-...+ .......++-+.. +.++ ..+.-+-..-...|+++.||+.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e-~gl~~e~~~v~~~~~~~~---~~~~~~inP~g~vP~L~~~g~~ 61 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAE-KGLRCEEYDVSLPLSEHN---EPWFMRLNPTGEVPVLIHGDNI 61 (73)
T ss_pred CEEecCCCCccHHHHHHHHHH-cCCCCEEEEecCCcCccC---CHHHHHhCcCCCCCEEEECCEE
Confidence 468999999999888755543 2222333544332 1111 2334444555668999888764
No 265
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=25.75 E-value=14 Score=35.89 Aligned_cols=10 Identities=30% Similarity=1.308 Sum_probs=8.0
Q ss_pred ecCCCHHHHH
Q 018527 272 GAFWCSHCLE 281 (354)
Q Consensus 272 gA~WCpHC~~ 281 (354)
+.+|||+||+
T Consensus 273 ~t~~CP~CQ~ 282 (282)
T PRK13945 273 STHWCPNCQK 282 (282)
T ss_pred ccEECCCCcC
Confidence 4679999984
No 266
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.73 E-value=8.1e+02 Score=29.62 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHH
Q 018527 115 LPFIGMFAYGLVAVL 129 (354)
Q Consensus 115 ~sl~Gl~~Y~~vl~l 129 (354)
..+||+.+|.+.+++
T Consensus 76 ~~LFGl~AYLLP~LL 90 (1355)
T PRK10263 76 FFIFGVMAYTIPVII 90 (1355)
T ss_pred HHHHhHHHHHHHHHH
Confidence 458888888776544
No 267
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=25.43 E-value=1e+02 Score=26.45 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.4
Q ss_pred hHhhhhCCCCccceeeE--C--CE--EeeCC-CCHHHHHHHh
Q 018527 311 AKACSDAKIEGFPTWVI--N--GQ--VLSGE-QDLSDLAKAS 345 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~i--n--G~--~y~G~-r~l~~La~~s 345 (354)
.++|++.+|+. |+..+ + ++ .|.|. .+.++|.+|.
T Consensus 31 ~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 31 EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHH
Confidence 47899999999 99887 3 32 69998 8999999985
No 268
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.63 E-value=91 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.1
Q ss_pred eEEEecCCCHHHHHHHHHHhH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk 288 (354)
+++||-|-|.-|++.+..+.+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA 23 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 579999999999999999865
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=24.57 E-value=50 Score=28.97 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.6
Q ss_pred hHhhhhCCCCccceeeE
Q 018527 311 AKACSDAKIEGFPTWVI 327 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~i 327 (354)
.+...+.||.|.||.+|
T Consensus 159 ~~~a~~~gv~g~Ptfvv 175 (193)
T cd03025 159 QKLARELGINGFPTLVL 175 (193)
T ss_pred HHHHHHcCCCccCEEEE
Confidence 45677899999999999
No 270
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=24.37 E-value=8.8 Score=30.26 Aligned_cols=27 Identities=33% Similarity=0.815 Sum_probs=18.5
Q ss_pred CCHHHHHHHH--HHhHHHhccCceeECCCCCC
Q 018527 275 WCSHCLEQKQ--MFGSEAVKQLNYVECFPDGY 304 (354)
Q Consensus 275 WCpHC~~qk~--~fgk~A~~~l~yVeC~~~g~ 304 (354)
-||+|+.|-. +|-+ +.+.||||..=|+
T Consensus 10 ~CP~C~~~D~i~~~~e---~~ve~vECV~CGy 38 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWRE---NGVEYVECVECGY 38 (71)
T ss_pred cCCCCcCccEEEEEEe---CCceEEEecCCCC
Confidence 5999999875 3443 2477888876554
No 271
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.60 E-value=18 Score=35.09 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.5
Q ss_pred EecCCCHHHHH
Q 018527 271 YGAFWCSHCLE 281 (354)
Q Consensus 271 YgA~WCpHC~~ 281 (354)
=+.+|||+||+
T Consensus 262 R~t~~CP~CQ~ 272 (272)
T PRK14810 262 RSSHYCPHCQK 272 (272)
T ss_pred CccEECcCCcC
Confidence 35789999984
No 272
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.58 E-value=95 Score=29.15 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=28.5
Q ss_pred hHhhhhCCCCccceeeECCEEeeCCCCHHHHHHH
Q 018527 311 AKACSDAKIEGFPTWVINGQVLSGEQDLSDLAKA 344 (354)
Q Consensus 311 ~~lC~~~~I~gyPTw~inG~~y~G~r~l~~La~~ 344 (354)
.+...+.|+=|-|||++++|.|=|-.-+.+|...
T Consensus 166 ~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea~ 199 (203)
T COG3917 166 TAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEAE 199 (203)
T ss_pred HHHHHhcCccCCCeEEECCeeeechhHHHHHHHH
Confidence 3567778999999999999999999888777643
No 273
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.57 E-value=4.2e+02 Score=22.39 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=42.3
Q ss_pred ChhHHHHHHHhcccCeEEEecCCCHHHHHHHHHHhHHHhccCceeECCCCCCCCCcchhHhhhhCCCCcc----------
Q 018527 253 SPFALSLAKHLHAIGAKMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPDGYRKGTKIAKACSDAKIEGF---------- 322 (354)
Q Consensus 253 ~~~~~~la~~L~~~g~k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~g~~~~~~~~~lC~~~~I~gy---------- 322 (354)
.+...++.+.+++.|+.+++-.==.. .+++ .|.++..-..+++ ++++ .++.+++|+.+.
T Consensus 50 ~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~-~~~~~~~~~~~~l-~D~~--------~~~~~~~gv~~~~~~~~~~~~~ 118 (154)
T PRK09437 50 ACGLRDNMDELKKAGVVVLGISTDKP-EKLS-RFAEKELLNFTLL-SDED--------HQVAEQFGVWGEKKFMGKTYDG 118 (154)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCH-HHHH-HHHHHhCCCCeEE-ECCC--------chHHHHhCCCcccccccccccC
Confidence 34567788888888888776542111 2222 3444322223334 3432 256777888654
Q ss_pred --ce-eeE--CCE---EeeCCCCHHH
Q 018527 323 --PT-WVI--NGQ---VLSGEQDLSD 340 (354)
Q Consensus 323 --PT-w~i--nG~---~y~G~r~l~~ 340 (354)
|+ ++| ||+ .|.|....+.
T Consensus 119 ~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 119 IHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cceEEEEECCCCEEEEEEcCCCcchh
Confidence 44 566 676 5777554444
No 274
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=23.02 E-value=4.3e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHH
Q 018527 161 ASAYFLYILSTNFSGATCSYCLTSALLSFSLFFIS 195 (354)
Q Consensus 161 ~s~yllyil~~~vI~alCp~Cl~s~~is~~Lf~lt 195 (354)
....-+|++... .-.-|+.|+.--+....+.++.
T Consensus 20 a~~~sLy~q~v~-gl~PC~LCiyQRi~~~~l~l~~ 53 (135)
T PRK00611 20 GTLMSIYYSYIL-NVEPCVLCYYQRICLFPLVVIL 53 (135)
T ss_pred HHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHH
Confidence 334446776655 4689999999887777766643
No 275
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.80 E-value=3.9e+02 Score=28.35 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=42.3
Q ss_pred CeEEEecCCCHHHHHHHHHHhHHHh--ccCce--eECCCCCCCCCcchhHhhhhCCCCccceeeE---CCE----EeeCC
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGSEAV--KQLNY--VECFPDGYRKGTKIAKACSDAKIEGFPTWVI---NGQ----VLSGE 335 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk~A~--~~l~y--VeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i---nG~----~y~G~ 335 (354)
-.+.|-.+-|+.|.+++++..+-+. .+|.+ +|... ..++.++++|+-.|+..| +|+ +|.|.
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~--------~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGE--------EPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEecccc--------chhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 3556777889999999999987542 33433 33222 247788999999999887 343 56665
Q ss_pred C
Q 018527 336 Q 336 (354)
Q Consensus 336 r 336 (354)
=
T Consensus 441 P 441 (555)
T TIGR03143 441 P 441 (555)
T ss_pred C
Confidence 3
No 276
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.02 E-value=1.6e+02 Score=25.16 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEEecCCCHHHHHHHHHHhHH
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSE 289 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~ 289 (354)
++.||-|-|.-|++.+..|.+.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 6789999999999999999863
No 277
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=21.95 E-value=7.4e+02 Score=24.04 Aligned_cols=19 Identities=37% Similarity=0.766 Sum_probs=9.8
Q ss_pred cccCCchhHHHHHHHHHHHH
Q 018527 109 VVFGVPLPFIGMFAYGLVAV 128 (354)
Q Consensus 109 ~vfGiP~sl~Gl~~Y~~vl~ 128 (354)
.++|+|.=+| +-+|.++.+
T Consensus 27 ~~~g~~~vlf-~PGy~l~~~ 45 (287)
T PF07760_consen 27 VILGFPFVLF-LPGYALVAA 45 (287)
T ss_pred HHHHHHHHHH-hccHHHHHH
Confidence 4466665444 445655443
No 278
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=21.90 E-value=1.8e+02 Score=31.25 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred cccCCchhHHHHHHHH-HHHHHHHHh-ccccCC
Q 018527 109 VVFGVPLPFIGMFAYG-LVAVLGLLL-ARKSFP 139 (354)
Q Consensus 109 ~vfGiP~sl~Gl~~Y~-~vl~lav~~-~~~~l~ 139 (354)
.+||-|+++=|+.+|. =-..+++.. ..+|++
T Consensus 90 dvfG~pLa~E~l~AFFlEstFlGl~lFGw~rl~ 122 (514)
T PRK15035 90 DIFGAPLAMEALMAFFLESTFVGLFFFGWQRLN 122 (514)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3589999999995544 344456554 344565
No 279
>PRK10026 arsenate reductase; Provisional
Probab=21.68 E-value=1.5e+02 Score=26.17 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.8
Q ss_pred CeEEEecCCCHHHHHHHHHHhH
Q 018527 267 GAKMYGAFWCSHCLEQKQMFGS 288 (354)
Q Consensus 267 g~k~YgA~WCpHC~~qk~~fgk 288 (354)
.+++|+-|-|.-|++.++.+.+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRN 24 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 4689999999999999999875
No 280
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.47 E-value=1.1e+02 Score=26.44 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.5
Q ss_pred hhHhhhhCCCCccceeeECCEE-eeCC-CCHHHHHHHhCCCCCCCC
Q 018527 310 IAKACSDAKIEGFPTWVINGQV-LSGE-QDLSDLAKASGFPEMSQP 353 (354)
Q Consensus 310 ~~~lC~~~~I~gyPTw~inG~~-y~G~-r~l~~La~~sg~~~~~~~ 353 (354)
..++=++.|.+..|--.+||+. ..|. =+-+||++|+|.....++
T Consensus 61 V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~~ 106 (123)
T PF06953_consen 61 VNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSELE 106 (123)
T ss_dssp HHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGTT
T ss_pred HHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCccccc
Confidence 4567777899999999999994 3444 588999999998665543
No 281
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=21.41 E-value=1.5e+02 Score=28.78 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred eEEEecCCCHHHHHHHHHHhHHHhcc--CceeECCCCCCCCCcchhHhhhhCCCCccceeeE--CCE
Q 018527 268 AKMYGAFWCSHCLEQKQMFGSEAVKQ--LNYVECFPDGYRKGTKIAKACSDAKIEGFPTWVI--NGQ 330 (354)
Q Consensus 268 ~k~YgA~WCpHC~~qk~~fgk~A~~~--l~yVeC~~~g~~~~~~~~~lC~~~~I~gyPTw~i--nG~ 330 (354)
++.++-+-++.|+.+-..+...|.+. +.+|....+ ...+..++.+++.||..+ ||+
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~-------~~~~~~~f~~~~LPtllvYk~G~ 209 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRAS-------KCPASENFPDKNLPTLLVYKNGD 209 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEEC-------GCCTTTTS-TTC-SEEEEEETTE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehh-------ccCcccCCcccCCCEEEEEECCE
Confidence 44555999999999999999887654 445554322 112466789999999887 886
No 282
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=21.40 E-value=2.3e+02 Score=24.18 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.7
Q ss_pred hHhhhhCCCC--ccceeeE-C--CEEe---eCCCCHHHHHHHhC
Q 018527 311 AKACSDAKIE--GFPTWVI-N--GQVL---SGEQDLSDLAKASG 346 (354)
Q Consensus 311 ~~lC~~~~I~--gyPTw~i-n--G~~y---~G~r~l~~La~~sg 346 (354)
...-+..||. +||+..+ | +.+| .|..+.|.|.++..
T Consensus 69 ~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~ 112 (130)
T cd02983 69 LDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLR 112 (130)
T ss_pred HHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHH
Confidence 4578889995 4999887 2 2155 59999999998764
No 283
>PRK10445 endonuclease VIII; Provisional
Probab=20.76 E-value=21 Score=34.38 Aligned_cols=10 Identities=30% Similarity=1.232 Sum_probs=7.9
Q ss_pred ecCCCHHHHH
Q 018527 272 GAFWCSHCLE 281 (354)
Q Consensus 272 gA~WCpHC~~ 281 (354)
+.+|||+||+
T Consensus 254 ~t~~CP~CQ~ 263 (263)
T PRK10445 254 PFYWCPGCQK 263 (263)
T ss_pred CcEECCCCcC
Confidence 4679999984
No 284
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.56 E-value=23 Score=34.29 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.3
Q ss_pred ecCCCHHHH
Q 018527 272 GAFWCSHCL 280 (354)
Q Consensus 272 gA~WCpHC~ 280 (354)
+.+|||+||
T Consensus 264 ~t~~CP~CQ 272 (272)
T TIGR00577 264 GTHFCPQCQ 272 (272)
T ss_pred CCEECCCCC
Confidence 467999996
No 285
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=20.11 E-value=3.4e+02 Score=19.46 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=33.8
Q ss_pred EEEecCCCHHHHHHHHHHhHHHhccCceeECCCC-CCCCCcchhHhhhhCCCCccceeeECCEEe
Q 018527 269 KMYGAFWCSHCLEQKQMFGSEAVKQLNYVECFPD-GYRKGTKIAKACSDAKIEGFPTWVINGQVL 332 (354)
Q Consensus 269 k~YgA~WCpHC~~qk~~fgk~A~~~l~yVeC~~~-g~~~~~~~~~lC~~~~I~gyPTw~inG~~y 332 (354)
+.|+-+.|+.|.+.+-..... ......++.+.. +.+. ..+.=+...-...|+++.||+..
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~-gi~~~~~~~~~~~~~~~---~~~~~~~~p~~~vP~l~~~~~~l 62 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLK-GLDYEYVPVNLLKGEQL---SPAYRALNPQGLVPTLVIDGLVL 62 (73)
T ss_pred EEecCCCCcchHHHHHHHHHc-CCCCeEEEecCccCCcC---ChHHHHhCCCCCCCEEEECCEEE
Confidence 678888888888776666542 222334444432 1111 12322334556799998887643
Done!