BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018528
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T9G|R Chain R, Structure Of The Human Mcad:etf Complex
pdb|2A1T|R Chain R, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1U|A Chain A, Crystal Structure Of The Human Etf E165betaa Mutant
Length = 333
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 222/335 (66%), Gaps = 18/335 (5%)
Query: 21 SISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASS 80
S+ R STLV+ EH N S+ +L+ + AA L + VS L+AG+ + V
Sbjct: 15 SLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGE--VSCLVAGTK---CDKVAQDLCK 69
Query: 81 HPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDV 140
I++VLVA D + + E L+ Q++ Y+HI + + +FGKN+LPR AA L+V
Sbjct: 70 VAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEV 129
Query: 141 SPITDVIEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFPMPKSSAESRSN--G 198
+PI+D+I I FVR IYAGNALCTV+ + +VR TSF +S S S+
Sbjct: 130 APISDIIAIKSPDTFVRTIYAGNALCTVK-CDEKVKVFSVRGTSFDAAATSGGSASSEKA 188
Query: 199 ASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLA 258
+S S V++S + + KS +RP+L A++VV+GGRGLKS ENFK++ LA
Sbjct: 189 SSTSPVEISEWLDQKLTKS----------DRPELTGAKVVVSGGRGLKSGENFKLLYDLA 238
Query: 259 EKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVA 318
++L AAVGA+RA VDAGFVPND+QVGQTGKIVAPELY+A G+SGAIQHLAGM+DSK IVA
Sbjct: 239 DQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVA 298
Query: 319 VNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEK 353
+NKD +APIFQVADYG+V DLF+V+PE+ E +K
Sbjct: 299 INKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333
>pdb|1EFV|A Chain A, Three-Dimensional Structure Of Human Electron Transfer
Flavoprotein To 2.1 A Resolution
Length = 315
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/329 (49%), Positives = 219/329 (66%), Gaps = 18/329 (5%)
Query: 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQ 86
STLV+ EH N S+ +L+ + AA L + VS L+AG+ + V I++
Sbjct: 3 STLVIAEHANDSLAPITLNTITAATRLGGE--VSCLVAGTK---CDKVAQDLCKVAGIAK 57
Query: 87 VLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDV 146
VLVA D + + E L+ Q++ Y+HI + + +FGKN+LPR AA L+V+PI+D+
Sbjct: 58 VLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDI 117
Query: 147 IEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFPMPKSSAESRSN--GASISQV 204
I I FVR IYAGNALCTV+ + +VR TSF +S S S+ +S S V
Sbjct: 118 IAIKSPDTFVRTIYAGNALCTVK-CDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPV 176
Query: 205 DLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAA 264
++S + + KS +RP+L A++VV+GGRGLKS ENFK++ LA++L AA
Sbjct: 177 EISEWLDQKLTKS----------DRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAA 226
Query: 265 VGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDAD 324
VGA+RA VDAGFVPND+QVGQTGKIVAPELY+A G+SGAIQHLAGM+DSK IVA+NKD +
Sbjct: 227 VGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPE 286
Query: 325 APIFQVADYGLVGDLFEVIPELLEKFPEK 353
APIFQVADYG+V DLF+V+PE+ E +K
Sbjct: 287 APIFQVADYGIVADLFKVVPEMTEILKKK 315
>pdb|1EFP|A Chain A, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
pdb|1EFP|C Chain C, Electron Transfer Flavoprotein (Etf) From Paracoccus
Denitrificans
Length = 307
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 139/267 (52%), Positives = 184/267 (68%), Gaps = 12/267 (4%)
Query: 84 ISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143
+++VLVA+ + + +AEP A L+ + YSHI + + + KNV+PR AALLDV +
Sbjct: 53 VAKVLVAEDALYGHRLAEPTAALI--VGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVL 110
Query: 144 TDVIEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQ 203
+DV I + F RPIYAGNA+ V+ A + T+R SF A A +++
Sbjct: 111 SDVSAILDADTFERPIYAGNAIQVVKSKDAKK-VFTIRTASF-----DAAGEGGTAPVTE 164
Query: 204 VDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGA 263
+A G S +V +++RP+L SAR VV+GGRGL S E+F +IE+LA+KLGA
Sbjct: 165 TAAAA----DPGLSSWVADEVAESDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGA 220
Query: 264 AVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDA 323
AVGA+RA VD+G+ PND QVGQTGK+VAPELY+A G+SGAIQHLAGM+DSKVIVA+NKD
Sbjct: 221 AVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDE 280
Query: 324 DAPIFQVADYGLVGDLFEVIPELLEKF 350
+APIFQ+ADYGLVGDLF V+PEL K
Sbjct: 281 EAPIFQIADYGLVGDLFSVVPELTGKL 307
>pdb|1O94|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|B Chain B, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|D Chain D, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|F Chain F, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Z Chain Z, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|D Chain D, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
Length = 320
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 168 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDA 227
V + G + +LT+R + F P A S +S VD ++ S K D
Sbjct: 143 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI 197
Query: 228 ERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTG 287
D+ + +++ GRG+ N + +LA++ GA + +R + DAG++P QVGQ+G
Sbjct: 198 ---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSG 254
Query: 288 KIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 346
K+V +LY+A G+SG+IQH+AGM+ I+AVN D A IF +A YG+V D+F++ EL
Sbjct: 255 KVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 314
>pdb|3CLU|D Chain D, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 321
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 168 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDA 227
V + G + +LT+R + F P A S +S VD ++ S K D
Sbjct: 144 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI 198
Query: 228 ERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTG 287
D+ + +++ GRG+ N + +LA++ GA + ++ + DAG++P QVGQ+G
Sbjct: 199 ---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSKPIADAGWLPKSRQVGQSG 255
Query: 288 KIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 346
K+V +LY+A G+SG+IQH+AGM+ I+AVN D A IF +A YG+V D+F++ EL
Sbjct: 256 KVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 315
>pdb|3CLT|D Chain D, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
Length = 321
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 168 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDA 227
V + G + +LT+R + F P A S +S VD ++ S K D
Sbjct: 144 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI 198
Query: 228 ERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTG 287
D+ + +++ GRG+ N + +LA++ GA + + + DAG++P QVGQ+G
Sbjct: 199 ---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSEPIADAGWLPKSRQVGQSG 255
Query: 288 KIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 346
K+V +LY+A G+SG+IQH+AGM+ I+AVN D A IF +A YG+V D+F++ EL
Sbjct: 256 KVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 315
>pdb|3CLR|D Chain D, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
Length = 321
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 168 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDA 227
V + G + +LT+R + F P A S +S VD ++ S K D
Sbjct: 144 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI 198
Query: 228 ERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTG 287
D+ + +++ GRG+ N + +LA++ GA + + + DAG++P QVGQ+G
Sbjct: 199 ---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSAPIADAGWLPKSRQVGQSG 255
Query: 288 KIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 346
K+V +LY+A G+SG+IQH+AGM+ I+AVN D A IF +A YG+V D+F++ EL
Sbjct: 256 KVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 315
>pdb|3CLS|D Chain D, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
Length = 321
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 168 VRYTGANPCMLTVRATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDA 227
V + G + +LT+R + F P A S +S VD ++ S K D
Sbjct: 144 VDFPGKSTVVLTIRPSVFK-PLEGAGS----PVVSNVDAPSVQSRSQNKDYVEVGGGNDI 198
Query: 228 ERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTG 287
D+ + +++ GRG+ N + +LA++ GA + + + DAG++P QVGQ+G
Sbjct: 199 ---DITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPKSRQVGQSG 255
Query: 288 KIVAP-ELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPEL 346
K+V +LY+A G+SG+IQH+AGM+ I+AVN D A IF +A YG+V D+F++ EL
Sbjct: 256 KVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEEL 315
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 61 MLLAGSGPSFNEAVKHAASSHPSISQVLVADSD 93
+++ G GP+ EA AA+SHP +QV V D D
Sbjct: 5 IVILGGGPAGYEAALVAATSHPETTQVTVIDCD 37
>pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 305 QHLAGMRDSKVIVAVNKDADAPIFQV-ADYGLVGDLFEVIPELLE 348
+H G V AV DA +F + + GL+GD+F IPE E
Sbjct: 380 RHSRGFAIPCVCAAVALDAGTQMFSIESTSGLIGDVFGAIPEFRE 424
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 16 CFHRPSISR-SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAV 74
F+ P ++ +I++ V EN + ++ LS EA K + D S + LAG +FN+AV
Sbjct: 542 VFNLPDLNNLAITSFVRRNLEN-KLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV 600
Query: 75 KHAASS 80
A S+
Sbjct: 601 AEAKST 606
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 16 CFHRPSISR-SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAV 74
F+ P ++ +I++ V EN + ++ LS EA K + D S + LAG +FN+AV
Sbjct: 542 VFNLPDLNNLAITSFVRRNLEN-KLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV 600
Query: 75 KHAASS 80
A S+
Sbjct: 601 AEAKST 606
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 16 CFHRPSISR-SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAV 74
F+ P ++ +I++ V EN + ++ LS EA K + D S + LAG +FN+AV
Sbjct: 282 VFNLPDLNNLAITSFVRRNLEN-KLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAV 340
Query: 75 KHAASS 80
A S+
Sbjct: 341 AEAKST 346
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 271 VVDAG-FVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGM-----RDSKVIVAVNKDAD 324
VV AG +P D+ ++ ++ + G S +Q A + + I+ +N D +
Sbjct: 156 VVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPD-E 214
Query: 325 APIFQVADYGLVGDLFEVIPELL 347
P+ +ADY L G EV+ EL+
Sbjct: 215 TPLTPIADYSLRGKAGEVMDELV 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,588,225
Number of Sequences: 62578
Number of extensions: 367504
Number of successful extensions: 908
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 21
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)