Query 018528
Match_columns 354
No_of_seqs 192 out of 1348
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00022 electron transfer fla 100.0 6.2E-98 1E-102 726.0 36.5 334 19-354 20-356 (356)
2 COG2025 FixB Electron transfer 100.0 1.3E-95 3E-100 695.2 34.4 311 26-353 1-313 (313)
3 PRK03363 fixB putative electro 100.0 1E-91 2.2E-96 673.3 34.3 304 26-352 5-313 (313)
4 PRK11916 electron transfer fla 100.0 4.1E-89 8.9E-94 655.0 35.0 303 27-352 6-312 (312)
5 KOG3954 Electron transfer flav 100.0 6.5E-88 1.4E-92 614.5 24.5 318 23-353 18-336 (336)
6 PF00766 ETF_alpha: Electron t 100.0 2.7E-43 5.9E-48 275.1 7.8 86 229-314 1-86 (86)
7 cd01715 ETF_alpha The electron 100.0 6E-33 1.3E-37 245.8 20.9 159 27-192 1-159 (168)
8 cd01985 ETF The electron trans 100.0 6.4E-31 1.4E-35 235.2 20.5 161 27-192 1-170 (181)
9 PF01012 ETF: Electron transfe 100.0 1.3E-31 2.7E-36 236.0 15.6 159 27-187 1-164 (164)
10 cd01714 ETF_beta The electron 99.9 3.3E-24 7.2E-29 195.5 18.3 151 33-190 27-185 (202)
11 PRK12342 hypothetical protein; 99.8 1.1E-17 2.4E-22 157.2 20.8 151 33-189 27-185 (254)
12 PRK03359 putative electron tra 99.8 1.7E-17 3.8E-22 156.1 20.7 148 35-189 30-189 (256)
13 COG2086 FixA Electron transfer 99.7 1.8E-16 3.9E-21 149.0 18.0 149 34-189 30-188 (260)
14 KOG3180 Electron transfer flav 99.2 7.8E-10 1.7E-14 98.6 14.3 146 35-187 34-189 (254)
15 PRK07979 acetolactate synthase 97.2 0.0012 2.5E-08 69.5 8.9 120 231-352 202-337 (574)
16 PF00205 TPP_enzyme_M: Thiamin 97.1 0.0027 5.9E-08 53.8 8.4 109 236-346 13-137 (137)
17 TIGR02418 acolac_catab acetola 97.1 0.0019 4.2E-08 67.2 8.8 119 232-352 192-326 (539)
18 CHL00099 ilvB acetohydroxyacid 97.1 0.0019 4E-08 68.1 8.6 119 232-352 214-348 (585)
19 PRK07789 acetolactate synthase 97.0 0.002 4.3E-08 68.3 8.6 119 232-352 228-362 (612)
20 PRK08322 acetolactate synthase 97.0 0.0026 5.5E-08 66.3 9.0 119 232-352 193-326 (547)
21 PRK06725 acetolactate synthase 97.0 0.0026 5.7E-08 66.9 9.0 119 232-352 211-345 (570)
22 PRK06112 acetolactate synthase 97.0 0.0028 6.1E-08 66.6 9.3 119 232-352 210-348 (578)
23 TIGR01504 glyox_carbo_lig glyo 97.0 0.0029 6.3E-08 66.7 9.4 113 237-351 205-333 (588)
24 PRK08617 acetolactate synthase 96.9 0.003 6.5E-08 66.0 8.5 120 231-352 197-332 (552)
25 PRK06048 acetolactate synthase 96.9 0.0051 1.1E-07 64.5 9.8 119 232-352 204-338 (561)
26 PRK08527 acetolactate synthase 96.8 0.0039 8.5E-08 65.3 7.8 119 232-352 200-334 (563)
27 PRK06276 acetolactate synthase 96.7 0.0061 1.3E-07 64.2 9.1 120 231-352 199-334 (586)
28 PRK08979 acetolactate synthase 96.7 0.0043 9.4E-08 65.2 7.9 119 232-352 203-337 (572)
29 PRK06882 acetolactate synthase 96.7 0.0048 1E-07 64.8 8.0 118 232-351 203-336 (574)
30 PRK11269 glyoxylate carboligas 96.6 0.0073 1.6E-07 63.7 8.3 118 232-351 200-334 (591)
31 PRK06466 acetolactate synthase 96.6 0.0079 1.7E-07 63.2 8.5 119 232-352 203-337 (574)
32 PRK06154 hypothetical protein; 96.5 0.0077 1.7E-07 63.3 8.2 119 231-352 210-343 (565)
33 PRK08155 acetolactate synthase 96.5 0.0081 1.8E-07 62.9 8.3 120 231-352 207-342 (564)
34 PRK07710 acetolactate synthase 96.5 0.0096 2.1E-07 62.5 8.7 119 232-352 212-346 (571)
35 PRK06965 acetolactate synthase 96.5 0.011 2.4E-07 62.4 9.1 118 232-351 218-352 (587)
36 PRK07524 hypothetical protein; 96.4 0.0094 2E-07 62.0 8.2 118 231-352 197-330 (535)
37 PRK07282 acetolactate synthase 96.4 0.012 2.6E-07 61.8 8.5 118 232-352 207-341 (566)
38 PRK06456 acetolactate synthase 96.4 0.013 2.8E-07 61.5 8.7 119 232-352 204-339 (572)
39 PRK06546 pyruvate dehydrogenas 96.3 0.0099 2.2E-07 62.6 7.8 115 231-352 197-324 (578)
40 PRK07092 benzoylformate decarb 96.3 0.011 2.4E-07 61.5 8.0 118 232-352 203-337 (530)
41 PRK09107 acetolactate synthase 96.3 0.016 3.5E-07 61.2 9.0 119 232-352 209-345 (595)
42 PRK05858 hypothetical protein; 96.3 0.0092 2E-07 62.3 7.0 119 232-352 200-325 (542)
43 PRK08978 acetolactate synthase 96.2 0.014 3E-07 61.0 8.1 117 232-351 193-326 (548)
44 TIGR00118 acolac_lg acetolacta 96.2 0.017 3.6E-07 60.5 8.5 119 232-352 198-332 (558)
45 PRK07525 sulfoacetaldehyde ace 96.1 0.021 4.5E-07 60.3 8.9 120 231-352 196-334 (588)
46 PRK07418 acetolactate synthase 96.1 0.019 4.1E-07 60.9 8.4 118 233-352 222-355 (616)
47 PRK08199 thiamine pyrophosphat 96.1 0.023 5E-07 59.5 8.9 117 232-351 201-337 (557)
48 PRK08273 thiamine pyrophosphat 96.1 0.022 4.7E-07 60.3 8.7 117 231-352 204-334 (597)
49 PRK08327 acetolactate synthase 96.0 0.028 6E-07 59.1 8.7 119 232-352 217-345 (569)
50 PRK07064 hypothetical protein; 95.9 0.023 4.9E-07 59.3 7.5 116 232-352 200-328 (544)
51 TIGR03254 oxalate_oxc oxalyl-C 95.8 0.021 4.5E-07 59.8 6.9 120 231-352 202-331 (554)
52 PLN02470 acetolactate synthase 95.7 0.041 8.9E-07 58.0 8.8 117 232-352 212-344 (585)
53 PRK09124 pyruvate dehydrogenas 95.7 0.044 9.6E-07 57.6 8.8 116 231-352 197-325 (574)
54 PRK08266 hypothetical protein; 95.6 0.024 5.2E-07 59.0 6.5 116 232-352 202-326 (542)
55 PRK09259 putative oxalyl-CoA d 95.5 0.028 6E-07 59.1 6.7 119 232-352 210-338 (569)
56 TIGR00173 menD 2-succinyl-5-en 95.4 0.056 1.2E-06 54.8 8.4 116 231-352 207-338 (432)
57 TIGR03457 sulphoacet_xsc sulfo 95.4 0.052 1.1E-06 57.1 8.3 119 231-351 192-329 (579)
58 PRK06457 pyruvate dehydrogenas 94.9 0.11 2.4E-06 54.4 8.7 110 232-347 192-314 (549)
59 TIGR02720 pyruv_oxi_spxB pyruv 94.8 0.11 2.5E-06 54.6 8.6 112 237-352 203-327 (575)
60 COG0028 IlvB Thiamine pyrophos 94.7 0.15 3.3E-06 53.5 9.3 119 231-352 196-330 (550)
61 PRK08611 pyruvate oxidase; Pro 94.4 0.16 3.5E-06 53.4 8.6 110 236-352 205-327 (576)
62 TIGR03393 indolpyr_decarb indo 91.2 0.39 8.4E-06 50.1 6.0 116 232-351 202-335 (539)
63 PLN02573 pyruvate decarboxylas 90.6 0.66 1.4E-05 49.0 7.0 111 237-352 227-353 (578)
64 cd01408 SIRT1 SIRT1: Eukaryoti 89.8 0.46 9.9E-06 44.4 4.6 56 291-346 175-235 (235)
65 cd01412 SIRT5_Af1_CobB SIRT5_A 89.8 0.59 1.3E-05 43.1 5.2 55 291-347 164-224 (224)
66 PRK00481 NAD-dependent deacety 89.1 0.73 1.6E-05 43.1 5.4 56 293-350 179-240 (242)
67 COG2120 Uncharacterized protei 88.7 3.8 8.3E-05 38.2 9.9 99 22-126 7-120 (237)
68 PRK14138 NAD-dependent deacety 88.6 0.9 2E-05 42.7 5.6 59 292-351 179-242 (244)
69 PTZ00408 NAD-dependent deacety 87.9 0.95 2.1E-05 42.6 5.3 61 291-352 172-237 (242)
70 PRK00945 acetyl-CoA decarbonyl 87.6 1.7 3.7E-05 38.8 6.4 113 236-350 36-171 (171)
71 TIGR00315 cdhB CO dehydrogenas 83.0 2.8 6E-05 37.1 5.5 109 236-347 29-160 (162)
72 PLN02980 2-oxoglutarate decarb 82.8 4.1 8.9E-05 48.5 8.4 113 237-350 527-661 (1655)
73 COG0299 PurN Folate-dependent 81.3 22 0.00048 32.5 10.7 99 26-138 1-100 (200)
74 PRK07449 2-succinyl-5-enolpyru 80.7 6.6 0.00014 41.2 8.3 107 235-345 222-343 (568)
75 PRK12474 hypothetical protein; 79.9 6.3 0.00014 40.9 7.8 37 232-268 198-235 (518)
76 cd01987 USP_OKCHK USP domain i 78.7 28 0.0006 28.0 9.9 90 41-141 10-119 (124)
77 PRK05333 NAD-dependent deacety 78.4 4.3 9.4E-05 39.0 5.6 58 292-351 215-278 (285)
78 PRK13670 hypothetical protein; 76.8 27 0.00058 35.2 10.9 105 29-138 5-117 (388)
79 TIGR03394 indol_phenyl_DC indo 74.8 7 0.00015 40.9 6.4 110 236-350 203-330 (535)
80 PRK07586 hypothetical protein; 74.3 12 0.00025 38.8 7.9 36 232-267 194-230 (514)
81 PTZ00409 Sir2 (Silent Informat 73.4 6.4 0.00014 37.7 5.3 59 292-352 200-264 (271)
82 COG0462 PrsA Phosphoribosylpyr 73.4 44 0.00095 32.8 11.0 108 32-141 57-188 (314)
83 PRK07199 phosphoribosylpyropho 71.8 41 0.00088 32.7 10.5 101 40-143 62-187 (301)
84 TIGR03217 4OH_2_O_val_ald 4-hy 71.3 49 0.0011 32.6 11.1 91 41-137 114-210 (333)
85 PRK02269 ribose-phosphate pyro 70.1 42 0.0009 32.9 10.2 115 26-143 53-192 (320)
86 PF02585 PIG-L: GlcNAc-PI de-N 69.9 15 0.00032 30.3 6.1 47 81-127 64-112 (128)
87 PF03808 Glyco_tran_WecB: Glyc 66.6 71 0.0015 28.1 10.2 79 59-143 49-130 (172)
88 TIGR00236 wecB UDP-N-acetylglu 65.6 97 0.0021 30.0 11.9 106 26-143 1-114 (365)
89 COG0846 SIR2 NAD-dependent pro 65.4 3.9 8.5E-05 38.7 1.9 60 292-353 183-248 (250)
90 cd06533 Glyco_transf_WecG_TagA 63.7 79 0.0017 27.8 9.9 94 42-144 34-129 (171)
91 PRK10116 universal stress prot 63.2 83 0.0018 25.8 10.4 104 25-143 3-135 (142)
92 TIGR01718 Uridine-psphlse urid 62.1 25 0.00054 32.9 6.7 84 236-352 53-139 (245)
93 PRK08195 4-hyroxy-2-oxovalerat 61.7 1E+02 0.0022 30.4 11.1 92 41-138 115-212 (337)
94 PRK00553 ribose-phosphate pyro 61.5 55 0.0012 32.3 9.2 115 26-143 57-195 (332)
95 cd00293 USP_Like Usp: Universa 61.2 76 0.0016 24.6 11.7 103 28-143 2-128 (130)
96 PRK13011 formyltetrahydrofolat 61.1 98 0.0021 29.8 10.7 100 22-138 86-186 (286)
97 PLN02746 hydroxymethylglutaryl 59.2 1.7E+02 0.0037 29.1 12.2 64 71-138 200-264 (347)
98 PRK03692 putative UDP-N-acetyl 58.6 99 0.0021 29.1 10.0 91 43-143 94-186 (243)
99 PRK06027 purU formyltetrahydro 58.0 90 0.002 30.0 9.8 101 8-123 71-173 (286)
100 TIGR01251 ribP_PPkin ribose-ph 57.3 1.2E+02 0.0026 29.4 10.7 102 40-143 62-186 (308)
101 PRK02458 ribose-phosphate pyro 56.8 69 0.0015 31.4 9.0 102 40-143 70-196 (323)
102 TIGR00696 wecB_tagA_cpsF bacte 56.0 1.5E+02 0.0032 26.4 10.3 92 42-143 36-129 (177)
103 PRK03092 ribose-phosphate pyro 55.3 77 0.0017 30.8 9.0 101 39-141 49-174 (304)
104 PRK00726 murG undecaprenyldiph 55.1 1.3E+02 0.0028 28.9 10.6 108 25-145 1-120 (357)
105 TIGR00655 PurU formyltetrahydr 53.5 1.5E+02 0.0033 28.4 10.6 87 22-123 81-168 (280)
106 TIGR01133 murG undecaprenyldip 53.2 1.8E+02 0.0038 27.6 11.2 105 26-143 1-117 (348)
107 PF07355 GRDB: Glycine/sarcosi 53.0 36 0.00077 33.8 6.2 53 95-147 60-119 (349)
108 COG1701 Uncharacterized protei 52.8 15 0.00032 34.0 3.3 41 314-354 175-215 (256)
109 PRK10481 hypothetical protein; 51.7 1.4E+02 0.0029 27.9 9.5 84 57-146 130-213 (224)
110 PRK02122 glucosamine-6-phospha 51.7 1.6E+02 0.0035 31.9 11.4 43 81-123 480-530 (652)
111 PF02006 DUF137: Protein of un 51.2 18 0.00039 32.3 3.4 41 313-353 110-150 (178)
112 PRK05692 hydroxymethylglutaryl 50.8 1.9E+02 0.0042 27.7 10.8 63 71-137 158-221 (287)
113 PLN02846 digalactosyldiacylgly 49.9 66 0.0014 33.2 7.9 115 24-143 3-145 (462)
114 PRK13761 hypothetical protein; 48.8 19 0.00041 33.6 3.3 41 313-353 171-211 (248)
115 PRK13010 purU formyltetrahydro 48.4 1.6E+02 0.0036 28.4 9.9 86 23-123 91-177 (289)
116 TIGR03446 mycothiol_Mca mycoth 48.2 2.6E+02 0.0055 26.9 11.2 24 99-122 105-128 (283)
117 PRK01259 ribose-phosphate pyro 47.3 1.3E+02 0.0027 29.4 9.0 102 40-143 61-185 (309)
118 cd07943 DRE_TIM_HOA 4-hydroxy- 46.8 2.5E+02 0.0054 26.3 12.2 91 42-138 113-208 (263)
119 PF00582 Usp: Universal stress 45.7 43 0.00092 26.4 4.8 103 27-143 4-137 (140)
120 TIGR01917 gly_red_sel_B glycin 45.6 55 0.0012 33.4 6.3 51 97-147 58-115 (431)
121 COG4015 Predicted dinucleotide 45.6 86 0.0019 28.1 6.8 82 26-130 106-187 (217)
122 TIGR01918 various_sel_PB selen 45.4 55 0.0012 33.4 6.3 50 98-147 59-115 (431)
123 cd07939 DRE_TIM_NifV Streptomy 45.4 2.6E+02 0.0056 26.1 10.9 63 71-137 142-204 (259)
124 COG2222 AgaS Predicted phospho 45.0 56 0.0012 32.4 6.2 95 235-339 39-140 (340)
125 PF01884 PcrB: PcrB family; I 44.7 93 0.002 29.1 7.3 56 28-89 155-210 (230)
126 TIGR00715 precor6x_red precorr 44.6 1.7E+02 0.0037 27.7 9.3 92 26-143 1-96 (256)
127 PF02670 DXP_reductoisom: 1-de 44.1 43 0.00092 28.5 4.6 92 37-136 8-110 (129)
128 PLN02871 UDP-sulfoquinovose:DA 44.0 79 0.0017 32.0 7.4 119 17-148 50-177 (465)
129 cd03174 DRE_TIM_metallolyase D 43.5 2.6E+02 0.0057 25.6 11.5 63 71-137 149-212 (265)
130 smart00664 DoH Possible catech 43.1 23 0.0005 29.9 2.9 51 280-337 15-65 (148)
131 TIGR01769 GGGP geranylgeranylg 42.4 58 0.0013 29.9 5.5 56 28-89 149-204 (205)
132 PRK06849 hypothetical protein; 42.3 2.1E+02 0.0046 28.2 10.1 82 25-124 4-85 (389)
133 cd07948 DRE_TIM_HCS Saccharomy 42.2 2.6E+02 0.0057 26.4 10.2 64 70-137 143-206 (262)
134 PF03351 DOMON: DOMON domain; 41.7 26 0.00056 28.4 2.9 36 282-322 19-54 (124)
135 PRK14478 nitrogenase molybdenu 41.6 1.8E+02 0.0038 30.1 9.6 81 42-143 335-415 (475)
136 COG0159 TrpA Tryptophan syntha 41.5 2.2E+02 0.0048 27.3 9.4 85 40-135 78-167 (265)
137 PRK12581 oxaloacetate decarbox 41.4 2.9E+02 0.0062 28.7 10.9 106 21-137 114-228 (468)
138 PF00682 HMGL-like: HMGL-like 41.2 1.9E+02 0.004 26.4 8.9 64 71-138 140-204 (237)
139 PRK11178 uridine phosphorylase 41.0 94 0.002 29.2 6.9 58 292-352 84-144 (251)
140 cd03784 GT1_Gtf_like This fami 40.6 61 0.0013 31.8 5.9 38 108-148 97-134 (401)
141 cd07940 DRE_TIM_IPMS 2-isoprop 40.6 3.1E+02 0.0068 25.7 10.7 64 71-138 146-212 (268)
142 PRK07178 pyruvate carboxylase 39.6 1.2E+02 0.0025 31.3 7.9 67 42-123 13-81 (472)
143 PRK05647 purN phosphoribosylgl 39.5 2.9E+02 0.0063 25.0 10.1 85 25-121 1-86 (200)
144 PF13528 Glyco_trans_1_3: Glyc 39.3 2.1E+02 0.0045 26.9 9.2 107 26-144 1-119 (318)
145 PF10087 DUF2325: Uncharacteri 39.3 1.1E+02 0.0025 24.0 6.2 74 61-143 2-79 (97)
146 PF15632 ATPgrasp_Ter: ATP-gra 39.3 23 0.0005 34.9 2.6 59 293-351 1-63 (329)
147 cd01988 Na_H_Antiporter_C The 39.2 1.9E+02 0.0042 22.8 10.1 94 41-143 10-129 (132)
148 PRK12331 oxaloacetate decarbox 39.1 4.5E+02 0.0098 27.1 12.4 93 43-141 125-224 (448)
149 PRK02812 ribose-phosphate pyro 38.9 2.7E+02 0.0058 27.5 9.9 99 39-139 81-202 (330)
150 PRK08558 adenine phosphoribosy 38.4 42 0.00092 31.4 4.1 40 103-143 99-138 (238)
151 PF02844 GARS_N: Phosphoribosy 38.2 1.2E+02 0.0027 24.5 6.2 19 105-123 52-70 (100)
152 PRK14040 oxaloacetate decarbox 37.3 4.4E+02 0.0096 28.2 11.9 104 26-137 111-220 (593)
153 cd01409 SIRT4 SIRT4: Eukaryoti 37.2 37 0.00081 32.1 3.6 50 292-343 205-260 (260)
154 PRK07206 hypothetical protein; 37.0 1.3E+02 0.0027 30.0 7.6 39 105-144 60-98 (416)
155 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.9 2.3E+02 0.005 26.8 9.0 90 42-137 119-214 (275)
156 cd01485 E1-1_like Ubiquitin ac 36.9 71 0.0015 28.8 5.2 60 60-121 21-94 (198)
157 PRK11858 aksA trans-homoaconit 36.3 4.5E+02 0.0097 26.2 12.3 63 72-138 149-211 (378)
158 cd05005 SIS_PHI Hexulose-6-pho 35.8 1.5E+02 0.0032 25.8 7.0 88 231-337 29-126 (179)
159 PRK05597 molybdopterin biosynt 35.5 1.7E+02 0.0036 29.0 8.0 85 59-145 29-149 (355)
160 cd03466 Nitrogenase_NifN_2 Nit 35.4 2.2E+02 0.0048 28.8 9.1 32 106-143 363-394 (429)
161 PLN02293 adenine phosphoribosy 35.3 74 0.0016 28.6 5.0 41 102-143 49-89 (187)
162 TIGR00615 recR recombination p 35.1 2.8E+02 0.0061 25.3 8.7 89 13-115 65-163 (195)
163 TIGR01768 GGGP-family geranylg 34.9 1.3E+02 0.0027 28.1 6.6 58 28-90 151-208 (223)
164 PLN02297 ribose-phosphate pyro 34.0 2.9E+02 0.0062 27.3 9.2 93 41-135 79-202 (326)
165 TIGR01826 CofD_related conserv 33.3 4.7E+02 0.01 25.6 11.2 74 70-145 193-270 (310)
166 cd05006 SIS_GmhA Phosphoheptos 33.2 87 0.0019 27.3 5.1 48 290-338 99-153 (177)
167 PF00070 Pyr_redox: Pyridine n 32.8 1.9E+02 0.0041 21.4 6.3 58 61-120 2-59 (80)
168 PRK00934 ribose-phosphate pyro 32.7 3.4E+02 0.0074 25.9 9.4 102 39-143 58-181 (285)
169 PRK11557 putative DNA-binding 32.7 61 0.0013 30.4 4.2 96 231-337 124-226 (278)
170 PF05728 UPF0227: Uncharacteri 32.4 63 0.0014 29.1 4.1 58 82-142 27-84 (187)
171 cd01976 Nitrogenase_MoFe_alpha 32.3 2E+02 0.0044 29.1 8.2 32 106-143 360-391 (421)
172 TIGR02370 pyl_corrinoid methyl 32.1 3.8E+02 0.0081 24.0 10.2 105 30-146 87-194 (197)
173 COG0281 SfcA Malic enzyme [Ene 32.1 1.1E+02 0.0025 31.1 6.1 79 12-93 151-234 (432)
174 COG0075 Serine-pyruvate aminot 31.9 4.6E+02 0.01 26.5 10.4 91 51-149 74-171 (383)
175 cd02064 FAD_synthetase_N FAD s 31.8 3E+02 0.0064 24.2 8.3 85 39-128 11-113 (180)
176 PRK00025 lpxB lipid-A-disaccha 31.7 1.9E+02 0.0042 27.9 7.8 103 25-143 1-113 (380)
177 cd01492 Aos1_SUMO Ubiquitin ac 31.2 1E+02 0.0023 27.7 5.3 61 60-122 23-95 (197)
178 PF04007 DUF354: Protein of un 31.2 2.5E+02 0.0054 27.7 8.3 101 26-144 1-108 (335)
179 PRK08462 biotin carboxylase; V 31.0 2E+02 0.0044 29.0 8.0 69 42-124 15-85 (445)
180 TIGR03581 EF_0839 conserved hy 31.0 43 0.00093 31.2 2.7 55 237-299 56-124 (236)
181 PF07563 DUF1541: Protein of u 30.9 25 0.00053 25.3 0.9 13 305-317 11-23 (53)
182 PRK02910 light-independent pro 30.8 3.6E+02 0.0078 28.2 9.9 89 27-143 295-384 (519)
183 KOG1185 Thiamine pyrophosphate 30.7 42 0.00092 34.9 2.9 40 312-352 302-343 (571)
184 PF06574 FAD_syn: FAD syntheta 30.7 1.1E+02 0.0024 26.6 5.2 95 40-139 18-137 (157)
185 PRK09288 purT phosphoribosylgl 30.0 53 0.0012 32.4 3.5 27 315-341 37-63 (395)
186 PLN03228 methylthioalkylmalate 29.7 6.8E+02 0.015 26.3 11.8 64 72-139 243-310 (503)
187 cd03796 GT1_PIG-A_like This fa 29.7 3.5E+02 0.0076 26.5 9.3 87 45-144 210-298 (398)
188 cd07944 DRE_TIM_HOA_like 4-hyd 29.4 4.9E+02 0.011 24.5 12.2 90 42-137 110-205 (266)
189 cd03812 GT1_CapH_like This fam 29.4 4.7E+02 0.01 24.4 11.1 88 46-142 18-106 (358)
190 TIGR02355 moeB molybdopterin s 29.4 1.7E+02 0.0036 27.3 6.5 63 59-123 25-99 (240)
191 cd02070 corrinoid_protein_B12- 29.2 4.2E+02 0.0091 23.7 9.8 99 30-141 85-186 (201)
192 TIGR01108 oadA oxaloacetate de 29.0 6.4E+02 0.014 26.9 11.5 104 26-137 105-214 (582)
193 PF00107 ADH_zinc_N: Zinc-bind 28.9 1.6E+02 0.0035 23.6 5.7 63 43-122 3-65 (130)
194 PRK05690 molybdopterin biosynt 28.7 1.9E+02 0.004 27.0 6.7 58 59-118 33-102 (245)
195 PRK13811 orotate phosphoribosy 28.5 2.9E+02 0.0062 24.2 7.6 45 98-143 39-83 (170)
196 cd07945 DRE_TIM_CMS Leptospira 28.3 5.3E+02 0.011 24.6 11.3 63 71-138 150-214 (280)
197 TIGR00514 accC acetyl-CoA carb 28.1 3E+02 0.0065 27.9 8.6 87 42-142 13-102 (449)
198 COG0324 MiaA tRNA delta(2)-iso 28.0 55 0.0012 32.0 3.1 27 117-143 5-32 (308)
199 PRK14041 oxaloacetate decarbox 28.0 7E+02 0.015 25.9 11.4 89 43-137 124-218 (467)
200 cd04962 GT1_like_5 This family 27.4 5.3E+02 0.011 24.3 10.6 110 26-147 1-119 (371)
201 TIGR00250 RNAse_H_YqgF RNAse H 27.0 1.2E+02 0.0027 25.5 4.7 40 102-141 35-85 (130)
202 COG0496 SurE Predicted acid ph 26.9 2.7E+02 0.0059 26.5 7.4 106 34-145 6-123 (252)
203 PRK00211 sulfur relay protein 26.9 3.2E+02 0.007 22.5 7.2 63 26-91 2-80 (119)
204 TIGR02090 LEU1_arch isopropylm 26.8 6.3E+02 0.014 25.0 12.3 63 72-138 145-207 (363)
205 PRK09219 xanthine phosphoribos 26.8 78 0.0017 28.5 3.6 41 102-143 37-77 (189)
206 PRK07028 bifunctional hexulose 26.7 3.8E+02 0.0082 27.1 9.0 111 43-162 150-260 (430)
207 PF06722 DUF1205: Protein of u 26.7 60 0.0013 26.1 2.6 36 289-325 38-87 (97)
208 TIGR03568 NeuC_NnaA UDP-N-acet 26.6 65 0.0014 31.8 3.4 110 26-143 1-121 (365)
209 TIGR00083 ribF riboflavin kina 26.2 2.6E+02 0.0056 27.0 7.3 93 44-140 15-130 (288)
210 PRK13374 purine nucleoside pho 26.0 1.5E+02 0.0032 27.5 5.5 56 232-319 53-108 (233)
211 PF13180 PDZ_2: PDZ domain; PD 25.9 79 0.0017 23.8 3.1 39 283-321 3-43 (82)
212 cd07941 DRE_TIM_LeuA3 Desulfob 25.7 5.7E+02 0.012 24.1 11.8 62 72-138 155-218 (273)
213 PF13167 GTP-bdg_N: GTP-bindin 25.7 1.2E+02 0.0027 24.3 4.2 59 248-321 7-65 (95)
214 cd00757 ThiF_MoeB_HesA_family 25.6 2.3E+02 0.005 25.9 6.7 58 59-118 22-91 (228)
215 TIGR01744 XPRTase xanthine pho 25.3 96 0.0021 28.0 4.0 45 98-143 30-77 (191)
216 cd03812 GT1_CapH_like This fam 25.3 4.7E+02 0.01 24.4 9.0 84 46-144 210-295 (358)
217 TIGR02660 nifV_homocitr homoci 25.3 4.2E+02 0.0091 26.2 8.9 61 73-137 147-207 (365)
218 cd03817 GT1_UGDG_like This fam 25.2 1.9E+02 0.004 26.8 6.1 47 103-149 72-118 (374)
219 COG0353 RecR Recombinational D 25.1 5.4E+02 0.012 23.6 10.1 86 16-115 69-164 (198)
220 KOG2666 UDP-glucose/GDP-mannos 25.1 75 0.0016 31.5 3.3 41 229-283 165-205 (481)
221 COG0381 WecB UDP-N-acetylgluco 25.0 5.3E+02 0.011 26.1 9.4 114 25-143 3-120 (383)
222 TIGR02667 moaB_proteo molybden 24.9 4.6E+02 0.01 22.8 9.6 54 81-138 33-88 (163)
223 cd07938 DRE_TIM_HMGL 3-hydroxy 24.8 4.5E+02 0.0097 24.9 8.7 62 72-138 153-216 (274)
224 COG1922 WecG Teichoic acid bio 24.8 4.8E+02 0.01 24.8 8.6 65 59-128 109-174 (253)
225 PRK13606 LPPG:FO 2-phospho-L-l 24.7 94 0.002 30.3 4.0 77 237-348 4-81 (303)
226 PRK13844 recombination protein 24.7 5.5E+02 0.012 23.5 9.1 85 15-113 71-165 (200)
227 PRK12475 thiamine/molybdopteri 24.7 2.4E+02 0.0052 27.8 7.0 35 60-96 26-60 (338)
228 TIGR03445 mycothiol_MshB 1D-my 24.5 2.4E+02 0.0051 27.1 6.7 21 101-121 109-129 (284)
229 PF08057 Ery_res_leader2: Eryt 24.5 26 0.00056 17.8 0.1 10 11-20 4-13 (14)
230 COG2217 ZntA Cation transport 24.5 3.5E+02 0.0076 29.7 8.7 83 36-136 535-617 (713)
231 TIGR02356 adenyl_thiF thiazole 24.3 1.8E+02 0.0039 26.1 5.6 36 59-96 22-57 (202)
232 COG0196 RibF FAD synthase [Coe 23.9 5.1E+02 0.011 25.3 8.9 81 43-128 31-129 (304)
233 PF01745 IPT: Isopentenyl tran 23.9 64 0.0014 30.2 2.5 28 118-145 4-32 (233)
234 cd01968 Nitrogenase_NifE_I Nit 23.4 3.6E+02 0.0079 27.0 8.2 90 27-143 289-378 (410)
235 cd01410 SIRT7 SIRT7: Eukaryoti 23.4 1.2E+02 0.0027 27.5 4.4 46 292-338 156-206 (206)
236 PRK11340 phosphodiesterase Yae 23.4 1.6E+02 0.0034 27.8 5.3 10 293-302 244-253 (271)
237 PRK02186 argininosuccinate lya 23.3 3.7E+02 0.0079 30.1 8.8 93 27-142 3-96 (887)
238 PLN02369 ribose-phosphate pyro 23.2 6.9E+02 0.015 24.1 10.2 101 40-142 52-178 (302)
239 PRK15456 universal stress prot 23.1 1.7E+02 0.0037 24.0 4.9 40 104-143 94-139 (142)
240 cd05014 SIS_Kpsf KpsF-like pro 23.0 1.3E+02 0.0029 24.2 4.2 47 290-337 45-98 (128)
241 PRK11890 phosphate acetyltrans 22.9 7E+02 0.015 24.4 9.6 71 42-127 34-108 (312)
242 PLN02846 digalactosyldiacylgly 22.9 6.2E+02 0.013 26.2 9.8 84 45-144 245-329 (462)
243 PRK06827 phosphoribosylpyropho 22.9 3E+02 0.0064 27.8 7.3 102 39-143 104-234 (382)
244 TIGR00330 glpX fructose-1,6-bi 22.8 4E+02 0.0086 26.2 7.8 104 10-127 105-213 (321)
245 cd01974 Nitrogenase_MoFe_beta 22.8 4.5E+02 0.0098 26.6 8.8 31 107-143 369-399 (435)
246 cd01965 Nitrogenase_MoFe_beta_ 22.7 3.7E+02 0.008 27.1 8.1 88 27-143 301-393 (428)
247 COG1646 Predicted phosphate-bi 22.1 2.5E+02 0.0053 26.5 6.0 54 28-89 166-219 (240)
248 PF13579 Glyco_trans_4_4: Glyc 22.0 64 0.0014 26.1 2.0 95 42-147 6-104 (160)
249 PRK05627 bifunctional riboflav 22.0 5.4E+02 0.012 25.0 8.7 99 39-141 25-147 (305)
250 PF06925 MGDG_synth: Monogalac 22.0 1.4E+02 0.0031 25.7 4.4 51 100-150 74-127 (169)
251 PF03596 Cad: Cadmium resistan 21.9 16 0.00034 33.3 -1.8 21 287-307 163-188 (191)
252 PRK15427 colanic acid biosynth 21.8 6.5E+02 0.014 25.0 9.6 88 45-144 239-333 (406)
253 PRK04169 geranylgeranylglycery 21.7 1.9E+02 0.0041 27.1 5.3 59 28-91 156-214 (232)
254 PRK03957 V-type ATP synthase s 21.7 2.9E+02 0.0063 22.1 5.7 33 82-121 18-50 (100)
255 cd06337 PBP1_ABC_ligand_bindin 21.3 2.9E+02 0.0062 26.7 6.8 49 97-145 51-99 (357)
256 PF02350 Epimerase_2: UDP-N-ac 21.3 93 0.002 30.6 3.3 82 57-142 9-94 (346)
257 TIGR01704 MTA/SAH-Nsdase 5'-me 21.2 1.2E+02 0.0025 27.9 3.8 36 291-328 66-104 (228)
258 TIGR03134 malonate_gamma malon 21.1 4.6E+02 0.0099 24.6 7.7 75 27-108 68-154 (238)
259 PRK08223 hypothetical protein; 21.1 3.7E+02 0.0081 26.0 7.3 57 60-118 29-97 (287)
260 PRK12388 fructose-1,6-bisphosp 21.1 4.5E+02 0.0098 25.9 7.8 104 10-127 105-213 (321)
261 TIGR00977 LeuA_rel 2-isopropyl 21.0 5.9E+02 0.013 26.8 9.3 65 72-140 158-223 (526)
262 TIGR00779 cad cadmium resistan 20.7 46 0.001 30.3 1.0 22 287-308 163-189 (193)
263 PRK09282 pyruvate carboxylase 20.7 1E+03 0.023 25.4 11.3 90 42-137 124-219 (592)
264 cd00886 MogA_MoaB MogA_MoaB fa 20.6 5.3E+02 0.012 21.9 9.3 55 81-139 31-87 (152)
265 PRK08762 molybdopterin biosynt 20.5 3.1E+02 0.0068 27.2 7.0 59 60-120 137-207 (376)
266 PRK12344 putative alpha-isopro 20.5 5.6E+02 0.012 26.9 9.1 64 72-139 162-225 (524)
267 PRK14042 pyruvate carboxylase 20.5 8.2E+02 0.018 26.2 10.3 111 24-142 108-225 (596)
268 cd01413 SIR2_Af2 SIR2_Af2: Arc 20.5 1.2E+02 0.0027 27.8 3.8 45 292-337 172-221 (222)
269 cd01491 Ube1_repeat1 Ubiquitin 20.4 2.2E+02 0.0047 27.5 5.6 59 59-119 20-90 (286)
270 cd06347 PBP1_ABC_ligand_bindin 20.4 2E+02 0.0044 26.9 5.4 49 97-145 49-97 (334)
271 cd04962 GT1_like_5 This family 20.4 6.8E+02 0.015 23.5 9.2 27 117-143 272-298 (371)
272 KOG3332 N-acetylglucosaminyl p 20.4 7.3E+02 0.016 23.4 10.8 91 25-122 37-143 (247)
273 PRK08099 bifunctional DNA-bind 20.2 7.1E+02 0.015 25.1 9.5 123 11-143 28-183 (399)
274 cd04951 GT1_WbdM_like This fam 20.2 7E+02 0.015 23.1 9.6 86 44-144 204-291 (360)
275 cd01977 Nitrogenase_VFe_alpha 20.2 2.6E+02 0.0057 28.1 6.4 30 109-144 352-381 (415)
276 cd01487 E1_ThiF_like E1_ThiF_l 20.2 2E+02 0.0043 25.3 4.9 55 61-117 2-67 (174)
277 COG1323 Predicted nucleotidylt 20.2 8.8E+02 0.019 24.3 10.3 99 26-128 2-107 (358)
No 1
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=100.00 E-value=6.2e-98 Score=726.04 Aligned_cols=334 Identities=74% Similarity=1.092 Sum_probs=290.7
Q ss_pred cccccccceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcC-CCccEEEEEeCCCCC
Q 018528 19 RPSISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSH-PSISQVLVADSDKFA 96 (354)
Q Consensus 19 ~~~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~-~GaD~V~~~~~~~l~ 96 (354)
..+++|.|+||||+||.+|+++++|+|+|++|++|++ .++|.++++|.+...++.++++. .. ||+|+||++++|.++
T Consensus 20 ~~~~~~~m~i~V~~E~~~g~l~~~slEll~~Ar~La~~~~~v~avv~g~~~~~~~~a~~l~-~~~~Gad~V~~~~~~~l~ 98 (356)
T PLN00022 20 IASQSRQISTLVVAEHEGGSVKPQSLSAVAAAKSLLGESSPISLLLAGSGPSLQQAASHAA-SSHPSVSEVLVADSDKLT 98 (356)
T ss_pred HHHHhcCCeEEEEEeCcCCEeCHHHHHHHHHHHHhcCCCCceEEEEEcCCcchhhHHHHHh-hccCCCCEEEEecCchhc
Confidence 4567888999999999999999999999999999984 24799999987621356777776 22 699999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeCCcEEEEEccCcEEEEEEEecCCCCE
Q 018528 97 YPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGSSQFVRPIYAGNALCTVRYTGANPC 176 (354)
Q Consensus 97 ~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~~~~~~R~~ygG~~~a~i~~~~~~p~ 176 (354)
.|+++.|+++|++++++++|++||+|+|.+||+|+||||++|++++++||++|+++..++||+|||++++++.+...+|+
T Consensus 99 ~y~~e~~a~al~~li~~~~P~~vL~~~T~~GrdlApRlAarL~~gl~aD~~~l~~~~~~~rp~~gG~~~a~i~~~~~~p~ 178 (356)
T PLN00022 99 HPLAEPWAKLVVLAQQKGGYSHILAASTSFGKNVLPRAAALLDVSPITDVVRILDSNTFVRPIYAGNALATVRYKGSGPC 178 (356)
T ss_pred ccChHHHHHHHHHHHHhcCCCEEEECCCCchhHHHHHHHHHhCCCeecCEEEEcCCCeEEEEecCCcEEEEEEeCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999865579999999999999997777899
Q ss_pred EEEEcCCCCCCCCCCCC-CCCCcceeeeecccccccCCCCceEEEEeeccCCCCCCCCCCcEEEEeCccCCChhcHHHHH
Q 018528 177 MLTVRATSFPMPKSSAE-SRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIE 255 (354)
Q Consensus 177 v~Tvr~g~f~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVV~~GrG~~~~e~~~~~~ 255 (354)
|+|+||+.|++.+.+.. +.+... ++..+...+..+.....++++...++...++|++|++||++|||++++|||++++
T Consensus 179 ~~Tvrpg~f~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~vVVsgGRGv~~~en~~l~e 257 (356)
T PLN00022 179 MLSIRPTSFPVTPALANSESNEAP-ISQVDLSLLDEDSVGKSRWVGLSVQDTERPDLGSAKVVVTGGRGLKSAENFKMLE 257 (356)
T ss_pred EEEECCCccccccccccccCCCcc-eEEeccccccccccCceEEEEEEccccCCCCcccCCEEEECCCccCCHHHHHHHH
Confidence 99999999987664431 011222 2222211000111234555665555555799999999999999999999999999
Q ss_pred HHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEE
Q 018528 256 KLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGL 335 (354)
Q Consensus 256 ~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygi 335 (354)
+||++|||+||||||+||+||+|+++|||||||+|+|+||||||||||+||++||++|++|||||+|||||||++|||||
T Consensus 258 eLA~~LGaavGaSRp~vD~GW~p~~~QIGqTGk~V~P~lYIA~GISGAiQH~~Gm~~s~~IVAIN~D~~APIF~~ADygI 337 (356)
T PLN00022 258 KLADKLGGAVGASRAAVDAGFVPNDLQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDADAPIFQVADYGL 337 (356)
T ss_pred HHHHHhCCceeccHHHHhCCCCChHheeccCCCCcCCcEEEEEecchHHHHHhhcccCCEEEEECCCCCCCchhhcCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHhhcccCC
Q 018528 336 VGDLFEVIPELLEKFPEKK 354 (354)
Q Consensus 336 VgD~~~vlp~l~~~l~~~~ 354 (354)
|||+++|||+|+|+||++|
T Consensus 338 VgD~~evlP~Lie~lk~~~ 356 (356)
T PLN00022 338 VADLFEAVPELLEKLPEKK 356 (356)
T ss_pred eeeHHHHHHHHHHHHHhcC
Confidence 9999999999999999876
No 2
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-95 Score=695.22 Aligned_cols=311 Identities=45% Similarity=0.703 Sum_probs=278.1
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAK 105 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~ 105 (354)
|++|||+||.+++++++|+|++++|++|+ ++.++++|.. .++++. .+|+|+||+++++.+++|.+|.|+.
T Consensus 1 ~~vlv~~e~~~~~l~~~s~el~~~A~~l~---~v~~vv~g~~-----~~~~~~--~~Gad~v~~~~~~~~~~~~~e~~~~ 70 (313)
T COG2025 1 MKVLVVAEHDGGRLSPVSLELLTAARKLG---DVAAVVIGEG-----AAAAAK--AYGADKVLVAEGPELANYLPEPYAD 70 (313)
T ss_pred CeEEEEecCCCCccchhhHHHHHHHHhcC---ceEEEEechH-----HHHHHh--hcCCCEEEEEcccchhccchhHHHH
Confidence 68999999999999999999999999997 8999999973 233333 4899999999999999999999999
Q ss_pred HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeCCc--EEEEEccCcEEEEEEEecCCCCEEEEEcCC
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGSS--QFVRPIYAGNALCTVRYTGANPCMLTVRAT 183 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~~~--~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g 183 (354)
+|.+++++++|++||+|+|.+||+++||+|++|+.++++||++++.+. .++||.|||+.++++.++.++|+|+|+||+
T Consensus 71 ~l~~l~~~~~p~~il~~aT~~Gk~la~rvAa~l~~~~~~D~~~l~~~~~l~~~Rp~ygG~~i~~~~~~~~~~~v~Tvr~g 150 (313)
T COG2025 71 ALVDLAKKYKPDVVLLPATTNGKELAPRVAARLDVGLIADVTSLDVGDGLTFTRPIYGGNAIATVISPSGRPAVITVRPG 150 (313)
T ss_pred HHHHHHHhcCCCEEEEcCCCchHHHHHHHHHHcCCCceEEEEEEEcCCccEEEeeccccceeEEEecCCCCceEEEEccc
Confidence 999999999999999999999999999999999999999999999665 899999999999999966788999999999
Q ss_pred CCCCCCCCCCCCCCcceeeeecccccccCCCCceEEEEeeccCCCCCCCCCCcEEEEeCccCCChhcHHHHHHHHHHhCC
Q 018528 184 SFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGA 263 (354)
Q Consensus 184 ~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga 263 (354)
.|++.+.... ++. ..+.++. .....+.+..+.....+++++|++|++|||||||++++|||+++++||++|||
T Consensus 151 ~~~~~~~~~~--~~~-~~~~v~~----~~~~~~~~~~~~~~~~~~~~~L~~A~iVVsgGRG~gs~enf~~i~~LA~~LGa 223 (313)
T COG2025 151 VFAAAAAALG--GSV-ETEKVVA----PANAIAVVSTGFSLKKSGRVDLAEAKIVVSGGRGLGSKENFKLLEELADVLGA 223 (313)
T ss_pred ccCCCCCCCC--Ccc-eEEEecC----ccccccceeeeeeeccCCCCccccceEEEEcCcccCChhhhHHHHHHHHHhCc
Confidence 9998666553 222 2222221 11122222223345667889999999999999999999999999999999999
Q ss_pred eecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEEeecHHHHH
Q 018528 264 AVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVI 343 (354)
Q Consensus 264 ~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vl 343 (354)
+||||||+||+||+|++||||||||+|+|+||||||||||+|||+||++||+|||||+|||||||++||||||||+|+|+
T Consensus 224 ~VGaSRp~vd~gw~p~d~QVGqTGk~V~P~LYIA~GISGAiQHlaGm~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~iv 303 (313)
T COG2025 224 AVGASRPAVDAGWMPNDRQVGQTGKTVAPKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIV 303 (313)
T ss_pred eeeccHHHHhcCCCCccceecCCCcEecccEEEEEecccHHHHHhhcccCcEEEEEcCCCCCCccccCCeeeeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccC
Q 018528 344 PELLEKFPEK 353 (354)
Q Consensus 344 p~l~~~l~~~ 353 (354)
|+|+++|+++
T Consensus 304 P~Lie~l~~~ 313 (313)
T COG2025 304 PALIEALKKR 313 (313)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 3
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=100.00 E-value=1e-91 Score=673.32 Aligned_cols=304 Identities=24% Similarity=0.397 Sum_probs=263.3
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAK 105 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~ 105 (354)
.+||||+|+.++ .+|+++.|++|+ +++.++++|.+ . ++++. .||+|+||+++++.++ |+++.|++
T Consensus 5 ~~v~V~aE~~~~-----~~Ell~~a~~l~--~~v~av~~g~~--~---~~~~~--~~Gad~V~~~~~~~~~-~~~e~~~~ 69 (313)
T PRK03363 5 SQVWVFSDTPSR-----LPELMNGAQALA--NQINAFVLNDA--D---GAQAI--QLGANHVWKLSGKPDD-RMIEDYAG 69 (313)
T ss_pred ceEEEEEEeCCc-----HHHHHHHHHHhc--CceEEEEECcc--h---HHHHH--hcCCCEEEEecCcccc-cChHHHHH
Confidence 359999996553 359999999997 57999999954 2 24455 4999999999998655 99999999
Q ss_pred HHHHHHHhcCc-cEEEeCCCCCccchHHHHHHHcCCCceeeeEEee--CC-cEEEEEccCcEEEEEEEecCCCCEEEEEc
Q 018528 106 LVHMIQQREKY-SHIISASGSFGKNVLPRAAALLDVSPITDVIEIS--GS-SQFVRPIYAGNALCTVRYTGANPCMLTVR 181 (354)
Q Consensus 106 aLa~li~~~~P-~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~--~~-~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr 181 (354)
+|++++++++| ++||||+|.+||+++||||++|++++++||++|+ ++ ..++||.|||++++++.+ ...|+|+|+|
T Consensus 70 al~~~i~~~~p~~~vl~~~T~~Gr~laprlAa~l~~gl~~D~~~l~~~~~~l~~~rp~~gG~~~a~~~~-~~~~~v~tvr 148 (313)
T PRK03363 70 VMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERI-ATPYAVLTIS 148 (313)
T ss_pred HHHHHHHhhCCCcEEEEcCCccHHHHHHHHHHHhCCCcccceEEEEecCCCcEEEEeccCCcEEEEEEE-CCCCeEEEEC
Confidence 99999999999 7999999999999999999999999999999997 22 468999999999999884 5568999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeeecccccccCCCCceEEEEeeccCCCCCCCCCCcEEEEeCccCCChhcHHHHHHHHHHh
Q 018528 182 ATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKL 261 (354)
Q Consensus 182 ~g~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~l 261 (354)
|+.|++.+.+.+++++ +++ .... . .....+.+.....+.+.++|++|++|||+|||++++|||+++++||++|
T Consensus 149 pg~f~~~~~~~~~~~~--v~~-~~~~---~-~~~~~~~~~~~~~~~~~v~L~~A~vVVsgGRG~~~~E~~~l~eeLA~~L 221 (313)
T PRK03363 149 SGTFDAAQPDASRTGE--THT-VEWQ---A-PAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAI 221 (313)
T ss_pred CCCccCCccCCCCCcc--eEE-eccc---C-CCcceEEEEEecccCCCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 9999987766543232 222 2211 1 1233555554444446799999999999999999999999999999999
Q ss_pred CCeecccHhhHhc-CCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEEeecHH
Q 018528 262 GAAVGATRAVVDA-GFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLF 340 (354)
Q Consensus 262 ga~vG~SRp~vd~-gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~ 340 (354)
||+||||||+||. ||+|+++|||||||+|+|+||||||||||+||++||++|++|||||||||||||++||||||||++
T Consensus 222 Gaavg~SRp~vd~~gW~p~~~QIGqTGk~V~P~lYiA~GISGaiQH~~Gm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~ 301 (313)
T PRK03363 222 GAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAV 301 (313)
T ss_pred CCeEEecHHHHccCCCCCHHheecCCCCCcCccEEEEEccccHHHHHhhcccCCEEEEEcCCCCCCchhhCCeeEeeeHH
Confidence 9999999999986 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccc
Q 018528 341 EVIPELLEKFPE 352 (354)
Q Consensus 341 ~vlp~l~~~l~~ 352 (354)
+|||+|+++++.
T Consensus 302 eilP~L~e~l~~ 313 (313)
T PRK03363 302 KILPALTAALAR 313 (313)
T ss_pred HHHHHHHHHhhC
Confidence 999999999873
No 4
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=100.00 E-value=4.1e-89 Score=655.02 Aligned_cols=303 Identities=24% Similarity=0.407 Sum_probs=261.0
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKL 106 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~a 106 (354)
+||||+| .++. .+|+++.|++|+ +++.++++|.. .++++. .||+|+||++++|. ..|+++.|+++
T Consensus 6 ~i~V~~e-~~~~----~~Ell~~A~~l~--~~v~~vv~g~~-----~~~~l~--~~Gad~V~~~~~~~-~~~~~e~~~~a 70 (312)
T PRK11916 6 SVWVFSD-NPER----YAELFGGAQQWG--QQVYAIVQNTD-----QAQAVM--PYGPKCIYVLEQND-ALQRTENYAES 70 (312)
T ss_pred eEEEEEe-cCCc----HHHHHHHHHHcC--CcEEEEEEChh-----HHHHHH--hcCCCEEEEeCCcc-cccChHHHHHH
Confidence 6999999 4444 559999999997 67999999953 244555 58999999999983 55779999999
Q ss_pred HHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeC--C-cEEEEEccCcEEEEEEEecCCCCEEEEEcCC
Q 018528 107 VHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISG--S-SQFVRPIYAGNALCTVRYTGANPCMLTVRAT 183 (354)
Q Consensus 107 La~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~--~-~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g 183 (354)
|++++++++|++||||+|.+||+|+||||+||++++++||++|+. + ..++||.|||++++++. +...|+|+|+||+
T Consensus 71 l~~~i~~~~P~~vL~~~T~~Grdla~rlAarL~~gl~~d~~~l~~~~~~~~~~rp~~gG~~~a~i~-~~~~p~v~tvrpg 149 (312)
T PRK11916 71 IAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEK-INSPLAIITLAPG 149 (312)
T ss_pred HHHHHHhcCCCEEEECCCcchHHHHHHHHHHhCCCcccceEEEEecCCCeEEEEEcCCCcEEEEEE-ECCCCeEEEECCC
Confidence 999999999999999999999999999999999999999999982 2 36899999999999998 5667999999999
Q ss_pred CCCCCCCCCCCCCCcceeeeecccccccCCCCceEEEEeeccCCCCCCCCCCcEEEEeCccCCChhcHHHHHHHHHHhCC
Q 018528 184 SFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGA 263 (354)
Q Consensus 184 ~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga 263 (354)
.|++.+.++.++++ ++..+.. . ...+++.+.........++|++|++|||+|||++++|||+++++||++|||
T Consensus 150 ~f~~~~~~~~~~~~---~~~~~~~---~-~~~~~~~~~~~~~~~~~~~L~~A~vVV~~GrG~~~~e~~~~~~~LA~~LGa 222 (312)
T PRK11916 150 VQEPCTSDTSHQCP---TETVPYV---A-PRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNA 222 (312)
T ss_pred CcCCCcCCCCCCcc---eEEeccc---C-CcceEEEEEeecccCCCCCcccCCEEEECCCCCCChHHHHHHHHHHHHhCC
Confidence 99987665432222 2222211 1 122344344333344468999999999999999999999999999999999
Q ss_pred eecccHhhHhc-CCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEEeecHHHH
Q 018528 264 AVGATRAVVDA-GFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEV 342 (354)
Q Consensus 264 ~vG~SRp~vd~-gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~v 342 (354)
+||||||+||. ||+|+++|||||||+|+|+||||||||||+||++||++|++|||||+||+||||++||||||||+++|
T Consensus 223 avG~SRp~vd~~gW~p~~~QIGqTGk~V~P~lYiA~GISGAiQH~aGm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~v 302 (312)
T PRK11916 223 EVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKV 302 (312)
T ss_pred EEEecHHHHccCCCCChhcEECCCCCCcCccEEEEeccccHHHHHhhcccCCEEEEECCCCCCCchhhCCeeEeeeHHHH
Confidence 99999999995 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccc
Q 018528 343 IPELLEKFPE 352 (354)
Q Consensus 343 lp~l~~~l~~ 352 (354)
+|+|+++|+.
T Consensus 303 lP~L~e~l~~ 312 (312)
T PRK11916 303 VPALISQLSR 312 (312)
T ss_pred HHHHHHHhhC
Confidence 9999999873
No 5
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-88 Score=614.50 Aligned_cols=318 Identities=60% Similarity=0.894 Sum_probs=296.4
Q ss_pred cccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCC-ccEEEEEeCCCCCCCCHH
Q 018528 23 SRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPS-ISQVLVADSDKFAYPIAE 101 (354)
Q Consensus 23 ~~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~G-aD~V~~~~~~~l~~~~~e 101 (354)
+||.+.|+++||.+|.+.|.||+++++|++|+ ++|++++.|.+ .+..+++++ +.+| +.+|++++++.|++..||
T Consensus 18 ~r~~StLv~aEh~~g~l~p~tls~i~AA~klg--~~vs~lv~Gs~--~~k~ae~~a-k~~~~v~kvlvae~~k~~~~lpe 92 (336)
T KOG3954|consen 18 SRCFSTLVLAEHQNGSLSPITLSTITAAKKLG--GDVSVLVAGSK--ASKAAEALA-KVVGDVKKVLVAEDDKLEGNLPE 92 (336)
T ss_pred HhhhheEEEEeccCCcccchhhHHHHHHHHcC--CceEEEEecCc--chHHHHHHH-hhccchheEEEeecchhcccchH
Confidence 68999999999999999999999999999999 89999999988 788888888 4678 999999999999999999
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeCCcEEEEEccCcEEEEEEEecCCCCEEEEEc
Q 018528 102 PWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVR 181 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~~~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr 181 (354)
.++.++-+..++.++++|+.+++++|+.+.||+|++|+...++|++.+...++|+||+|.||.+.+++ +...++++|+|
T Consensus 93 ~lapl~~~~~kq~~yshi~a~~SafGK~vlPRvaA~lDV~pIsdvi~i~s~dtFvRpiYAGNa~~tv~-~~~~~k~ltvR 171 (336)
T KOG3954|consen 93 QLAPLLLANQKQFDYSHILAGSSAFGKNVLPRVAAKLDVSPISDVIGIKSADTFVRPIYAGNAICTVK-CKAPIKLLTVR 171 (336)
T ss_pred HhHHHHHHHHhcCCeeEEEeccccccccchhhHHhhhcccchhheeEeccCcceeeeeeccceEEEEE-cCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 77899999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeeecccccccCCCCceEEEEeeccCCCCCCCCCCcEEEEeCccCCChhcHHHHHHHHHHh
Q 018528 182 ATSFPMPKSSAESRSNGASISQVDLSALDEDSIGKSRYVKHTSQDAERPDLGSARIVVTGGRGLKSAENFKMIEKLAEKL 261 (354)
Q Consensus 182 ~g~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~l 261 (354)
...|+|.+..+. +...+.... .+......+|+..+..++++++|+.|++||+||||+++.|||+|+..||++|
T Consensus 172 ~tsF~~a~~sg~---s~a~~~~~s----~~~~~~~se~v~~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdkl 244 (336)
T KOG3954|consen 172 ATSFPPAATSGG---SAATEVAPS----DDKPVSLSEWVSQELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKL 244 (336)
T ss_pred cccCCCcccCCC---CcceeeccC----CCChhHHHHHHHhhcccccCCccccceEEEECCcccCCcccceehHHHHHHh
Confidence 999999876552 333333211 1234556788888888899999999999999999999999999999999999
Q ss_pred CCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEEeecHHH
Q 018528 262 GAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFE 341 (354)
Q Consensus 262 ga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~ 341 (354)
||+||+||.+||+||+|.+-|||||||.|.|+||||+||||||||++|||+||+|||||+||+||||++||||+|||+|+
T Consensus 245 gaavGAtRaaVDaGyvpNdlQiGQTGKIVAPeLYiAvGisGAIQHLAGmKDSKvIvAINkDpdAPIFqvAD~GlvgDLfk 324 (336)
T KOG3954|consen 245 GAAVGATRAAVDAGYVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADYGLVGDLFK 324 (336)
T ss_pred chhhchhhhhhccCcCCCccccccccceeccceEEEEeccHHHHHhhcCccceEEEEecCCCCCCceeeecccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccC
Q 018528 342 VIPELLEKFPEK 353 (354)
Q Consensus 342 vlp~l~~~l~~~ 353 (354)
++|+|+|+|.++
T Consensus 325 iVPELtekL~kk 336 (336)
T KOG3954|consen 325 IVPELTEKLPKK 336 (336)
T ss_pred HhHHHHHhccCC
Confidence 999999999874
No 6
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=100.00 E-value=2.7e-43 Score=275.13 Aligned_cols=86 Identities=66% Similarity=1.092 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhh
Q 018528 229 RPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLA 308 (354)
Q Consensus 229 ~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~ 308 (354)
+++|++|++||++|||++++|||+++++||++|||++|||||++|+||+|+++||||||++|+|+||||||||||+||++
T Consensus 1 ~v~L~~A~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~~qIG~sG~~v~P~lyia~GISGa~qH~~ 80 (86)
T PF00766_consen 1 KVDLEEAEVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRERQIGQSGKTVAPKLYIAFGISGAIQHLA 80 (86)
T ss_dssp -S-TCCSSEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GGGBBSTTSB--T-SEEEEES----HHHHT
T ss_pred CCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchhhhcCCCCcEEeeeeeEeecchhhHHHHh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 018528 309 GMRDSK 314 (354)
Q Consensus 309 G~~~s~ 314 (354)
||++||
T Consensus 81 Gi~~s~ 86 (86)
T PF00766_consen 81 GIKDSK 86 (86)
T ss_dssp TTTT-S
T ss_pred hhhcCC
Confidence 999986
No 7
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=100.00 E-value=6e-33 Score=245.80 Aligned_cols=159 Identities=41% Similarity=0.620 Sum_probs=147.2
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKL 106 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~a 106 (354)
+||||+||.+|++++.++|+++.|++|+ +++.++++|++ .++.++++. .||+|+||+++++.+..|+++.|+++
T Consensus 1 ~ilV~~E~~~g~l~~~s~el~~~A~~l~--~~v~~v~~G~~--~~~~~~~~~--~~Gad~v~~~~~~~~~~~~~~~~a~a 74 (168)
T cd01715 1 SVLVLAEHRNGELRELTLEAVTAARKLG--GEVTALVIGSG--AEAVAAALK--AYGADKVLVAEDPALAHYLAEPYAPA 74 (168)
T ss_pred CEEEEEEecCCChHHHHHHHHHHHHHhC--CCEEEEEECCC--hHHHHHHHH--hcCCCEEEEecChhhcccChHHHHHH
Confidence 4899999999999999999999999997 68999999987 455577776 59999999999999999999999999
Q ss_pred HHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeCCcEEEEEccCcEEEEEEEecCCCCEEEEEcCCCCC
Q 018528 107 VHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGSSQFVRPIYAGNALCTVRYTGANPCMLTVRATSFP 186 (354)
Q Consensus 107 La~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~~~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g~f~ 186 (354)
|++++++.+|++||+|+|.+||+++||||++||+|+++||++++.+..++||.|||+.+++++ +.+.|+|+|+|||.|+
T Consensus 75 l~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l~~~~~~~r~~~gG~~~~~~~-~~~~p~v~tv~~g~f~ 153 (168)
T cd01715 75 LVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTALEDDLTFTRPIYAGNALATVK-SPDRPKVATVRPGAFP 153 (168)
T ss_pred HHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEEccCcEEEccccCceEEEEEE-eCCCCeEEEEcCCccc
Confidence 999999999999999999999999999999999999999999987678999999999999999 4577999999999999
Q ss_pred CCCCCC
Q 018528 187 MPKSSA 192 (354)
Q Consensus 187 ~~~~~~ 192 (354)
+.+.++
T Consensus 154 ~~~~~~ 159 (168)
T cd01715 154 AAAAGG 159 (168)
T ss_pred CCCCCC
Confidence 877655
No 8
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.98 E-value=6.4e-31 Score=235.22 Aligned_cols=161 Identities=34% Similarity=0.436 Sum_probs=145.2
Q ss_pred eeEEEEEecCCc----cChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHH-HHHhhcCCCccEEEEEeCCCCCCCCH
Q 018528 27 STLVLGEHENGS----IKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAV-KHAASSHPSISQVLVADSDKFAYPIA 100 (354)
Q Consensus 27 ~IlV~~E~~~g~----l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a-~~l~~~~~GaD~V~~~~~~~l~~~~~ 100 (354)
+||||+||.+|. +++.++|+++.|++|++ +++|+++++|++ .++.+ +.+. .+|+|+||+++++.++.|++
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~~~~~v~~v~~G~~--~~~~~~~~~~--~~Gad~v~~~~~~~~~~~~~ 76 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKEYGGEVTALVIGPP--AAEVALREAL--AMGADKVLLVEDPALAGYDP 76 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhhcCCeEEEEEECCh--HHHHHHHHHH--HhCCCEEEEEecCcccCCCh
Confidence 599999999999 99999999999999985 457999999987 44444 5555 49999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeC--C-cEEEEEccCcEEEEEEEecCCCCEE
Q 018528 101 EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISG--S-SQFVRPIYAGNALCTVRYTGANPCM 177 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~--~-~~~~R~~ygG~~~a~i~~~~~~p~v 177 (354)
+.|+++|++++++.+|++||+|+|..||+++||||++||+|+++||++++. + ..++||.|||+.+++++ ..+.|+|
T Consensus 77 ~~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~l~~~~~~~~~~r~~~~g~~~~~~~-~~~~p~v 155 (181)
T cd01985 77 EATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKLEIDGGDLTVTRPIYAGNGLETVE-SPDLPAV 155 (181)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEEEEEeCCEEEEEEEccCCCeEEEEE-ECCCCEE
Confidence 999999999999999999999999999999999999999999999999973 2 46899999999999999 4568999
Q ss_pred EEEcCCCCCCCCCCC
Q 018528 178 LTVRATSFPMPKSSA 192 (354)
Q Consensus 178 ~Tvr~g~f~~~~~~~ 192 (354)
+|++|+.|+|.+...
T Consensus 156 ~tv~~~~~~~~~~~~ 170 (181)
T cd01985 156 ITVRPGAFEPRYPSG 170 (181)
T ss_pred EEecCCCCCCCCCCC
Confidence 999999999876655
No 9
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=99.97 E-value=1.3e-31 Score=236.04 Aligned_cols=159 Identities=30% Similarity=0.457 Sum_probs=134.5
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWA 104 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a 104 (354)
+||||+||.+|++++.++|+|++|++|++ +++++++++|+.+..++..+++. ..+|+|+||++++|.+.+|+++.|+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l-~~~G~d~v~~~~~~~~~~~~~~~~a 79 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKAL-AKYGADKVYHIDDPALAEYDPEAYA 79 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHH-HSTTESEEEEEE-GGGTTC-HHHHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhh-hhcCCcEEEEecCccccccCHHHHH
Confidence 69999999999999999999999999987 57999999996222444433333 1599999999999999999999999
Q ss_pred HHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEeeCC---cEEEEEccCcEEEEEEEecCCCCEEEEEc
Q 018528 105 KLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEISGS---SQFVRPIYAGNALCTVRYTGANPCMLTVR 181 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l~~~---~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr 181 (354)
++|++++++.+|++||+|+|+.|++++||||++||+|+++||++++.+ ..++|++|||+.++++.+ .+.|+|+|++
T Consensus 80 ~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l~~~~~~~~~~r~~~gG~~~~~~~~-~~~~~v~tv~ 158 (164)
T PF01012_consen 80 DALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDLEVEDGGLVVTRPVYGGKVVATVRL-PSPPAVVTVR 158 (164)
T ss_dssp HHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEETTTTEEEEEEC-SSSSEEEEE-
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEEEECCCeEEEEEECCCCEEEEEEEC-CCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999832 479999999999999994 4789999999
Q ss_pred CCCCCC
Q 018528 182 ATSFPM 187 (354)
Q Consensus 182 ~g~f~~ 187 (354)
|++|+|
T Consensus 159 ~g~f~P 164 (164)
T PF01012_consen 159 PGAFEP 164 (164)
T ss_dssp TTSS--
T ss_pred CCCcCc
Confidence 999986
No 10
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.92 E-value=3.3e-24 Score=195.55 Aligned_cols=151 Identities=23% Similarity=0.186 Sum_probs=129.8
Q ss_pred EecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHH
Q 018528 33 EHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMI 110 (354)
Q Consensus 33 E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~l 110 (354)
+..+..+.+.+.++|++++++++ +++++++++|++. .++.++++. .||+|+||+++++.+..|+++.|+++|+++
T Consensus 27 ~~~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~-~~~~~~~l~--~~G~d~V~~~~~~~~~~~~~e~~a~al~~~ 103 (202)
T cd01714 27 EGVPLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQ-AEEALREAL--AMGADRAILVSDRAFAGADTLATAKALAAA 103 (202)
T ss_pred CCCCccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHH-HHHHHHHHH--HcCCCEEEEEecccccCCChHHHHHHHHHH
Confidence 44667788999999999988875 4689999999741 355666666 599999999999999999999999999999
Q ss_pred HHhcCccEEEeCCCCC---ccchHHHHHHHcCCCceeeeEEee--CC-cEEEEEccCcEEEEEEEecCCCCEEEEEcCCC
Q 018528 111 QQREKYSHIISASGSF---GKNVLPRAAALLDVSPITDVIEIS--GS-SQFVRPIYAGNALCTVRYTGANPCMLTVRATS 184 (354)
Q Consensus 111 i~~~~P~lVL~g~T~~---GrdlaprlAarL~~~lvtdv~~l~--~~-~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g~ 184 (354)
+++.+|++||+|+|.. ||+++||+|++||+|+++||++|+ ++ ..++||.|||+. +++ .. .|+|+|+||+.
T Consensus 104 i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~~~~~~~r~~~gG~~--~~~-~~-~p~VitVr~g~ 179 (202)
T cd01714 104 IKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGGVE--TVE-VK-LPAVITVDLGI 179 (202)
T ss_pred HHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeCCEEEEEEEcCCcEE--EEE-ec-CCEEEEEECCC
Confidence 9999999999999995 899999999999999999999997 23 368999999995 666 34 79999999999
Q ss_pred CCCCCC
Q 018528 185 FPMPKS 190 (354)
Q Consensus 185 f~~~~~ 190 (354)
|++.++
T Consensus 180 f~~~~~ 185 (202)
T cd01714 180 NEPRYP 185 (202)
T ss_pred CCCCCC
Confidence 987544
No 11
>PRK12342 hypothetical protein; Provisional
Probab=99.79 E-value=1.1e-17 Score=157.22 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=126.6
Q ss_pred EecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHH-HHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHH
Q 018528 33 EHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNE-AVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMI 110 (354)
Q Consensus 33 E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~-~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~l 110 (354)
+.....++++++++|++|.+|++ +++|+++.+|+....+. +.+++. ++|+|+.|++.++.+.+.++...+.+|++.
T Consensus 27 ~~~~~~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~al--amGaD~avli~d~~~~g~D~~ata~~La~~ 104 (254)
T PRK12342 27 DNAEAKISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVL--SRGPHSLYLVQDAQLEHALPLDTAKALAAA 104 (254)
T ss_pred CCCCccCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHH--HcCCCEEEEEecCccCCCCHHHHHHHHHHH
Confidence 34456799999999999999987 68999999998631123 335444 499999999999999999999999999999
Q ss_pred HHhcCccEEEeCCCC-Cc--cchHHHHHHHcCCCceeeeEEeeC--C-cEEEEEccCcEEEEEEEecCCCCEEEEEcCCC
Q 018528 111 QQREKYSHIISASGS-FG--KNVLPRAAALLDVSPITDVIEISG--S-SQFVRPIYAGNALCTVRYTGANPCMLTVRATS 184 (354)
Q Consensus 111 i~~~~P~lVL~g~T~-~G--rdlaprlAarL~~~lvtdv~~l~~--~-~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g~ 184 (354)
+++.+||+||+|..+ +| .+++|++|.+||+|+++.|.+++. + ..++|...+|....++. .|+++|+.++.
T Consensus 105 i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~~~~~~~~v~r~~e~g~e~v~~~----lPavvtv~~~~ 180 (254)
T PRK12342 105 IEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQRQGNKLIVERTLEDDVEVLELS----LPAVLCVTSDI 180 (254)
T ss_pred HHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEEEEeCCEEEEEEEcCCeEEEEEEc----CCEEEEEeCCC
Confidence 999999999999843 44 599999999999999999999862 2 36899999998765554 89999999999
Q ss_pred CCCCC
Q 018528 185 FPMPK 189 (354)
Q Consensus 185 f~~~~ 189 (354)
++|.-
T Consensus 181 n~PR~ 185 (254)
T PRK12342 181 NVPRI 185 (254)
T ss_pred CCCCC
Confidence 87754
No 12
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=99.78 E-value=1.7e-17 Score=156.11 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=125.6
Q ss_pred cCCccChHHHHHHHHHHhcCC--C-CcEEEEEEcCCCCHH--HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHH
Q 018528 35 ENGSIKSQSLSAVEAAKSLSD--D-NSVSMLLAGSGPSFN--EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHM 109 (354)
Q Consensus 35 ~~g~l~~~slell~~A~~La~--~-~~V~avv~G~~~~~~--~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~ 109 (354)
....+++++.++|++|.+|++ + ++|+++.+|+.. .+ ...+++. ++|+|+.|++.++.+...++...+.+|++
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~-a~~~~~lr~aL--AmGaD~avli~d~~~~g~D~~~tA~~La~ 106 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKA-LTNAKGRKDVL--SRGPDELIVVIDDQFEQALPQQTASALAA 106 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc-hhhHHHHHHHH--HcCCCEEEEEecCcccCcCHHHHHHHHHH
Confidence 345699999999999999998 3 699999999863 22 3455554 49999999999999999999999999999
Q ss_pred HHHhcCccEEEeCCCC-Cc--cchHHHHHHHcCCCceeeeEEee--CC--cEEEEEccCcEEEEEEEecCCCCEEEEEcC
Q 018528 110 IQQREKYSHIISASGS-FG--KNVLPRAAALLDVSPITDVIEIS--GS--SQFVRPIYAGNALCTVRYTGANPCMLTVRA 182 (354)
Q Consensus 110 li~~~~P~lVL~g~T~-~G--rdlaprlAarL~~~lvtdv~~l~--~~--~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~ 182 (354)
.+++.+||+||+|..+ +| .+++|++|.+||+|+++.|++++ .+ ..++|...+|....++. .|+++|+.+
T Consensus 107 ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l~~~~~~~v~v~r~~e~g~e~ve~~----lPavvtV~~ 182 (256)
T PRK03359 107 AAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETLSIP----LPAVIAVST 182 (256)
T ss_pred HHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEEEEecCCEEEEEEEcCCeEEEEEEc----CCEEEEEeC
Confidence 9999999999999844 43 59999999999999999999984 22 36899999998765555 899999999
Q ss_pred CCCCCCC
Q 018528 183 TSFPMPK 189 (354)
Q Consensus 183 g~f~~~~ 189 (354)
+.++|.-
T Consensus 183 ~~n~PR~ 189 (256)
T PRK03359 183 DINSPQI 189 (256)
T ss_pred CCCCCCC
Confidence 9998753
No 13
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=99.73 E-value=1.8e-16 Score=149.01 Aligned_cols=149 Identities=21% Similarity=0.163 Sum_probs=129.5
Q ss_pred ecCCccChHHHHHHHHHHhcCC---CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHH
Q 018528 34 HENGSIKSQSLSAVEAAKSLSD---DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMI 110 (354)
Q Consensus 34 ~~~g~l~~~slell~~A~~La~---~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~l 110 (354)
-.+-.+++.+++++++|.+|++ +++|+++.+|+.. .++..+++. ++|+|+.|++.|+.+.+.++...+.+|++.
T Consensus 30 gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~-a~~~lr~aL--AmGaDraili~d~~~~~~d~~~ta~~Laa~ 106 (260)
T COG2086 30 GVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ-AEEALREAL--AMGADRAILITDRAFAGADPLATAKALAAA 106 (260)
T ss_pred CCCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh-hHHHHHHHH--hcCCCeEEEEecccccCccHHHHHHHHHHH
Confidence 3556799999999999999998 4799999999764 566666655 599999999999999999999999999999
Q ss_pred HHhcCccEEEeCCCC-Cc--cchHHHHHHHcCCCceeeeEEeeC-C---cEEEEEccCcEEEEEEEecCCCCEEEEEcCC
Q 018528 111 QQREKYSHIISASGS-FG--KNVLPRAAALLDVSPITDVIEISG-S---SQFVRPIYAGNALCTVRYTGANPCMLTVRAT 183 (354)
Q Consensus 111 i~~~~P~lVL~g~T~-~G--rdlaprlAarL~~~lvtdv~~l~~-~---~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g 183 (354)
+++++|++||+|..+ +| .+++++||++||+|+++.+.+++. + .+++|...+|....++. .|+++|+..+
T Consensus 107 ~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~~----LPaVvtv~~~ 182 (260)
T COG2086 107 VKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEGGLETVEAP----LPAVVTVDLR 182 (260)
T ss_pred HHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEcc----CCEEEEeccc
Confidence 999999999999843 33 599999999999999999999982 2 46899999998866665 8999999999
Q ss_pred CCCCCC
Q 018528 184 SFPMPK 189 (354)
Q Consensus 184 ~f~~~~ 189 (354)
.++|.-
T Consensus 183 ~n~PR~ 188 (260)
T COG2086 183 INEPRY 188 (260)
T ss_pred cCCCCC
Confidence 999843
No 14
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=99.17 E-value=7.8e-10 Score=98.64 Aligned_cols=146 Identities=17% Similarity=0.103 Sum_probs=120.4
Q ss_pred cCCccChHHHHHHHHHHhcCC---CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 018528 35 ENGSIKSQSLSAVEAAKSLSD---DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQ 111 (354)
Q Consensus 35 ~~g~l~~~slell~~A~~La~---~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li 111 (354)
..-.++|.+-=++++|.+|++ -.++.+|.+|+.. ..+..+.+. ++|+|+.++++.+.-+.+.|...+++|..++
T Consensus 34 vk~SmNPF~eIAvEEAvrlKEk~l~eeviavs~G~aq-s~~ilRt~L--A~Gadr~~hv~~~~~~~lepl~vAKiLk~~v 110 (254)
T KOG3180|consen 34 VKHSMNPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQ-SQEILRTAL--AKGADRGVHVEVVGAEELEPLHVAKILKKLV 110 (254)
T ss_pred cccccCchHHHHHHHHHhHhhhhhhheEEEEecCccc-hHHHHHHHH--hccCCceeEEecCchhhccchHHHHHHHHHH
Confidence 445688888889999999987 3689999999875 455555554 4899999999977778899999999999999
Q ss_pred HhcCccEEEeCCCCC---ccchHHHHHHHcCCCceeeeEEeeC--C--cEEEEEccCcEEEEEEEecCCCCEEEEEcCCC
Q 018528 112 QREKYSHIISASGSF---GKNVLPRAAALLDVSPITDVIEISG--S--SQFVRPIYAGNALCTVRYTGANPCMLTVRATS 184 (354)
Q Consensus 112 ~~~~P~lVL~g~T~~---GrdlaprlAarL~~~lvtdv~~l~~--~--~~~~R~~ygG~~~a~i~~~~~~p~v~Tvr~g~ 184 (354)
+++++++||+|.... ..+.++.+|+.||||..+.+.+++. + ..++|.+.||-...++. .|.++|.--..
T Consensus 111 ekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGletl~~~----lPaVittDLRL 186 (254)
T KOG3180|consen 111 EKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLETLKVK----LPAVITTDLRL 186 (254)
T ss_pred HhhcCCEEEEcccccccchhhhHHHHHHHhCCcccccceeEEEcCCCcEEEEEEecCChhheeec----CceEEEeeccc
Confidence 999999999998664 4589999999999999999999872 2 46899999998755544 79998876555
Q ss_pred CCC
Q 018528 185 FPM 187 (354)
Q Consensus 185 f~~ 187 (354)
+.|
T Consensus 187 N~P 189 (254)
T KOG3180|consen 187 NTP 189 (254)
T ss_pred CCc
Confidence 554
No 15
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.22 E-value=0.0012 Score=69.47 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=87.4
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCcee---------CCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKIV---------APELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~V---------~P~lYia~ 298 (354)
-|.+|+ .++-+|.|+...+..+.+.+||+++|+-|-+|-.. .|.+|.+ ..+|..|..- ..+|.|++
T Consensus 202 ~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~v 279 (574)
T PRK07979 202 TLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMG--LGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAV 279 (574)
T ss_pred HHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcccc--CCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEe
Confidence 455664 77778888877777899999999999999887443 5777655 5677766422 35999999
Q ss_pred cccchhhhhhcc---CCCcEEEEEcCCCCCCccc-ccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGM---RDSKVIVAVNKDADAPIFQ-VADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~---~~s~~IVAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|.+=..+.+.+. .....+|-||.||.---.. ..|.+|++|+..+|..|++++++
T Consensus 280 G~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (574)
T PRK07979 280 GVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQ 337 (574)
T ss_pred CCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhh
Confidence 987544443322 2234688899998743222 46999999999999999988763
No 16
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=97.10 E-value=0.0027 Score=53.81 Aligned_cols=109 Identities=27% Similarity=0.390 Sum_probs=79.9
Q ss_pred cEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCC--CCceeccCCce---------eCCceEEEecccchh
Q 018528 236 RIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVP--NDLQVGQTGKI---------VAPELYMAFGVSGAI 304 (354)
Q Consensus 236 ~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p--~~~qIGqtG~~---------V~P~lYia~GISGa~ 304 (354)
+.++-.|+|+...+..+.+.+||+++|+-+..|-.. .|-+| |...+|..|.. =..++.|++|.+=..
T Consensus 13 rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~--kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 13 RPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG--KGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTRLSD 90 (137)
T ss_dssp SEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG--TTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSSSST
T ss_pred CEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc--ccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCCCcc
Confidence 457778888887788999999999999999766654 55555 56678877764 245799999976433
Q ss_pred hhhhc----cCCCcEEEEEcCCCCCCcccc-cceEEeecHHHHHHHH
Q 018528 305 QHLAG----MRDSKVIVAVNKDADAPIFQV-ADYGLVGDLFEVIPEL 346 (354)
Q Consensus 305 QH~~G----~~~s~~IVAIN~D~~ApIf~~-aDygiVgD~~~vlp~l 346 (354)
..+.| ....+.+|-||.||..-=-.. .|+.|+||+..+|.+|
T Consensus 91 ~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 91 FNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp TTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred ccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 33433 232237999999996554434 8999999999999876
No 17
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=97.08 E-value=0.0019 Score=67.21 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=84.1
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc---eeccCCce--------e-CCceEEEe
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL---QVGQTGKI--------V-APELYMAF 298 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~---qIGqtG~~--------V-~P~lYia~ 298 (354)
|.+|+ -++-+|.|+...+..+.+++||+++|+-|-.| .-..|.+|.++ .+|..|.. + ..+|.|++
T Consensus 192 l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt--~~gkg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~l 269 (539)
T TIGR02418 192 IQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVET--FQGAGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITI 269 (539)
T ss_pred HHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEc--cccCcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEe
Confidence 45554 67777788877778899999999999998877 33467888653 67766631 2 56899999
Q ss_pred cccchhhhhhcc--CCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGM--RDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~--~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=.--..... +....+|-||.||...-. ...|.+|++|+.++|+.|++.+++
T Consensus 270 G~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 326 (539)
T TIGR02418 270 GYDPIEYEPRNWNSENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPG 326 (539)
T ss_pred cCcccccCccccCcCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhcc
Confidence 965221111112 122467779999986432 236999999999999999988764
No 18
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=97.07 E-value=0.0019 Score=68.11 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=85.6
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~G 299 (354)
|.+|+ .+|-+|.|+......+.+++||++||+-|-+|-.. .|.+|.++ .+|..|. .-..+|.|++|
T Consensus 214 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~--kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 291 (585)
T CHL00099 214 ILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMG--KGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALG 291 (585)
T ss_pred HHcCCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEcccc--CcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 45555 67778889876677899999999999988776543 57777544 6787764 24679999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
.+=...++.+ ......+|-||.||+-.- ....|.+|++|+.++|++|++.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 348 (585)
T CHL00099 292 ARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKN 348 (585)
T ss_pred CCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhhh
Confidence 7633322222 233456888999996321 2246899999999999999998763
No 19
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.04 E-value=0.002 Score=68.26 Aligned_cols=119 Identities=26% Similarity=0.322 Sum_probs=84.6
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc--------ee-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK--------IV-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~--------~V-~P~lYia~G 299 (354)
|.+|+ .+|-.|.|+...+..+.+.+||+++|+-|-.|=- ..|.+|.++ .+|..|. .+ .++|.|++|
T Consensus 228 L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~--~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 305 (612)
T PRK07789 228 IAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLM--ARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALG 305 (612)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEccc--ccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEEC
Confidence 45555 6777788887667889999999999998877643 367777553 6776553 33 489999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+ +.....+|-||.|+..-- ....|++|+||..++++.|++.+++
T Consensus 306 ~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~ 362 (612)
T PRK07789 306 ARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRA 362 (612)
T ss_pred CCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhh
Confidence 7633322222 222334788999986321 2246999999999999999998864
No 20
>PRK08322 acetolactate synthase; Reviewed
Probab=97.02 E-value=0.0026 Score=66.35 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=83.6
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCC--CCceeccCCce--------e-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVP--NDLQVGQTGKI--------V-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p--~~~qIGqtG~~--------V-~P~lYia~G 299 (354)
|.+|+ -+|-+|.|+...+..+.+.+||+++|+-|-.|--. .|.+| |...+|..|.. + .++|.|++|
T Consensus 193 l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG 270 (547)
T PRK08322 193 IQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMG--KGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVG 270 (547)
T ss_pred HHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcccc--CCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44554 67777788776667899999999999988766432 56666 44567765522 2 579999999
Q ss_pred ccchhhhhhcc--CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAGM--RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G~--~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=.-..+.+. .....+|-||.||+..= ...+|+.+++|+..++++|++.+++
T Consensus 271 ~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 326 (547)
T PRK08322 271 HDVIEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLAD 326 (547)
T ss_pred CCCccccccccCCCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhccc
Confidence 65332222222 22346889999997632 2357999999999999999998753
No 21
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.01 E-value=0.0026 Score=66.85 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=83.8
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCcee---------CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKIV---------APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~V---------~P~lYia~G 299 (354)
|.+|+ .+|-+|+|+......+.+.+||+++|+-|-.|-- ..|.+|.++ .+|..|..- ..+|.|++|
T Consensus 211 L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~--~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG 288 (570)
T PRK06725 211 ISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM--GLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALG 288 (570)
T ss_pred HHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc--cCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeC
Confidence 45555 7777888887667788999999999998887643 357776543 566655422 359999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=..+.+.+ +.....+|-||.||..-= .-..|.+|+||+.++|++|++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~ 345 (570)
T PRK06725 289 VRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIH 345 (570)
T ss_pred CCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc
Confidence 8633332222 222345888999988611 1136999999999999999988753
No 22
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=97.01 E-value=0.0028 Score=66.61 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=82.8
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCce---------e-----CCce
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKI---------V-----APEL 294 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~---------V-----~P~l 294 (354)
|.+|+ .++-+|.|+...+..+.+.+||++||+-|-+|-. ..|.+|++ ..+|..|-. . .++|
T Consensus 210 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~--~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDl 287 (578)
T PRK06112 210 LAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNM--GKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADV 287 (578)
T ss_pred HHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc--ccccCCCCCccccccccccCCCccchHHHHHHHHhCCE
Confidence 44444 5555777877677788999999999998887655 35677744 457765531 1 6899
Q ss_pred EEEecccchhhhhhcc---CCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 295 YMAFGVSGAIQHLAGM---RDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 295 Yia~GISGa~QH~~G~---~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
.|++|-+=..+...+. ...+.+|-||.|+...-..+.++.|++|+..+|++|++++++
T Consensus 288 vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 348 (578)
T PRK06112 288 VLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALRG 348 (578)
T ss_pred EEEECCCCCccccccccccCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhhh
Confidence 9999965333333333 223567889999864333334799999999999999988753
No 23
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=97.00 E-value=0.0029 Score=66.73 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=83.1
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCcee----------CCceEEEecccchh
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKIV----------APELYMAFGVSGAI 304 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~V----------~P~lYia~GISGa~ 304 (354)
-+|-+|.|+...+..+.+.+||+++|+-|-.|-. ..|.+|++| .+|..|-.- ..++.|++|.+=.-
T Consensus 205 PvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~--gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~ 282 (588)
T TIGR01504 205 PLIVAGGGVINADAADLLQEFAELTGVPVIPTLM--GWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWAN 282 (588)
T ss_pred cEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCc--cCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCc
Confidence 5566788888777889999999999999988844 378888654 788776421 25999999987333
Q ss_pred hhhhcc---CCCcEEEEEcCCCCCCccc-ccceEEeecHHHHHHHHHhhcc
Q 018528 305 QHLAGM---RDSKVIVAVNKDADAPIFQ-VADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 305 QH~~G~---~~s~~IVAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l~ 351 (354)
.++.+. ...+.+|-||.||..-=.. ..|++|++|+..+|++|++.++
T Consensus 283 ~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (588)
T TIGR01504 283 RHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQ 333 (588)
T ss_pred cccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhh
Confidence 333332 2334477899998742111 3799999999999999998764
No 24
>PRK08617 acetolactate synthase; Reviewed
Probab=96.92 E-value=0.003 Score=65.96 Aligned_cols=120 Identities=20% Similarity=0.242 Sum_probs=84.0
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc---eeccCCc---------eeCCceEEE
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL---QVGQTGK---------IVAPELYMA 297 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~---qIGqtG~---------~V~P~lYia 297 (354)
-|.+|+ .+|-+|+|+...+..+.+.+||+++|+-|-.| .-..|.+|+++ .+|..|. .-.++|.|+
T Consensus 197 ~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt--~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~ 274 (552)
T PRK08617 197 LIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVET--FQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVIT 274 (552)
T ss_pred HHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEec--cccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEE
Confidence 345555 67777888776667889999999999988876 33468888765 5777663 236899999
Q ss_pred ecccchhhhhhcc--CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 298 FGVSGAIQHLAGM--RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 298 ~GISGa~QH~~G~--~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+|.+=........ ...+.+|-||.||+.-= ....|..|++|+..+++.|++.+++
T Consensus 275 lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 332 (552)
T PRK08617 275 IGYDPIEYEPRNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDG 332 (552)
T ss_pred ecCccccccccccccCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhc
Confidence 9965321111111 11245777999987522 2246999999999999999987763
No 25
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.87 E-value=0.0051 Score=64.46 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=84.8
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCC--CceeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPN--DLQVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~--~~qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ .+|-+|.|.......+.+++||++||+-|-+|-- ..|.+|. ...+|..|.. =..++.|++|
T Consensus 204 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~--~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG 281 (561)
T PRK06048 204 IMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM--GIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVG 281 (561)
T ss_pred HHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc--cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 34554 6777788877666788999999999999987743 4578874 4577877642 1679999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCC-CcccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADA-PIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+ +...+.+|-||.||.- .-+-..|..|++|+..+|+.|++.++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 338 (561)
T PRK06048 282 ARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQY 338 (561)
T ss_pred CCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccc
Confidence 7633222222 3334567889999853 112346999999999999999998753
No 26
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.75 E-value=0.0039 Score=65.32 Aligned_cols=119 Identities=25% Similarity=0.337 Sum_probs=83.5
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCc---------eeCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGK---------IVAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~---------~V~P~lYia~G 299 (354)
|.+|+ .+|-+|.|+......+.+++||+.+|+-|-.|-.. .|.+|.+ ..+|..|. .-.++|.|++|
T Consensus 200 L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~--kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG 277 (563)
T PRK08527 200 IKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMA--RGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLG 277 (563)
T ss_pred HHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--CCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeC
Confidence 45555 67777888877677899999999999988655433 4667754 45777663 22569999999
Q ss_pred ccchhhhhhcc---CCCcEEEEEcCCCCCC-cccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAGM---RDSKVIVAVNKDADAP-IFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G~---~~s~~IVAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+. .....+|-||.||..- -.-.+|+.|++|+.++|+.|++.+++
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (563)
T PRK08527 278 ARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKE 334 (563)
T ss_pred CCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhh
Confidence 75433322221 2234588899998631 12236999999999999999998864
No 27
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.73 E-value=0.0061 Score=64.21 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=84.3
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~ 298 (354)
-|.+|+ .+|-+|.|....+..+.+.+||+++|+-|-+|= -..|.+|+++ .+|..|. .=.+++.|++
T Consensus 199 ~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~--~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~l 276 (586)
T PRK06276 199 LIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL--MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAI 276 (586)
T ss_pred HHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC--CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEE
Confidence 345555 677778887655667899999999999998873 3467888554 5776653 3357999999
Q ss_pred cccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=.-.++.+ +.....+|-||.||.-.= ....|..|++|...+|+.|++.+++
T Consensus 277 G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 334 (586)
T PRK06276 277 GCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMK 334 (586)
T ss_pred CCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhh
Confidence 97644333333 233345778999985211 1135999999999999999998764
No 28
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.72 E-value=0.0043 Score=65.17 Aligned_cols=119 Identities=24% Similarity=0.236 Sum_probs=84.1
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ -++-.|+|+......+.+.+||+++|+-|-.|-. -.|.+|+++ .+|..|.. =..++.|++|
T Consensus 203 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~--gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG 280 (572)
T PRK08979 203 LLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLM--GLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIG 280 (572)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEccc--ccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEc
Confidence 34555 6777788877556778899999999999887754 368887654 67776631 2348999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCCccc-ccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAPIFQ-VADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~ApIf~-~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+ ......+|-||.||+-.=.. ..|.+|++|+.++|++|++.|.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (572)
T PRK08979 281 VRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDE 337 (572)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhh
Confidence 7633332222 22234588899998743211 36999999999999999987753
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.69 E-value=0.0048 Score=64.76 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=84.9
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCce--eccCCc--------ee-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQ--VGQTGK--------IV-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~q--IGqtG~--------~V-~P~lYia~G 299 (354)
|.+|+ -||-.|.|+...+..+.+.+||+++|+-|-.|- --.|.+|.++. +|..|. .+ .++|.|++|
T Consensus 203 l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~--~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG 280 (574)
T PRK06882 203 LLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSL--MGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIG 280 (574)
T ss_pred HHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcC--ccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEEC
Confidence 44555 677778888766677899999999999998883 34788886654 776663 22 679999999
Q ss_pred ccchhhhhhcc---CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhcc
Q 018528 300 VSGAIQHLAGM---RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 300 ISGa~QH~~G~---~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
-+=....+.+. .....+|-||.||.-.= ....|..|++|+.++|..|++.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 281 VRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 76444443222 22335778999986421 113699999999999999998774
No 30
>PRK11269 glyoxylate carboligase; Provisional
Probab=96.57 E-value=0.0073 Score=63.73 Aligned_cols=118 Identities=23% Similarity=0.322 Sum_probs=83.3
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCC--CceeccCCc----------eeCCceEEEe
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPN--DLQVGQTGK----------IVAPELYMAF 298 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~--~~qIGqtG~----------~V~P~lYia~ 298 (354)
|.+|+ -+|-+|.|+...+..+.+.+||+.+|+-|-.|- -..|.+|. ....|..|- .-.++|.|++
T Consensus 200 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~--~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~l 277 (591)
T PRK11269 200 LNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTL--MGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGI 277 (591)
T ss_pred HHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecc--cccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEe
Confidence 45555 667777787766678899999999999998774 44577774 446776653 2367999999
Q ss_pred cccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhcc
Q 018528 299 GVSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 299 GISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
|.+=....+.+ ......+|-||.|+..-= .-..|++|++|...++..|++.++
T Consensus 278 G~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 334 (591)
T PRK11269 278 GNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR 334 (591)
T ss_pred CCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence 97633222222 233345778999987511 123699999999999999998875
No 31
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.55 E-value=0.0079 Score=63.21 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ .++-.|.|+...+..+.+.+||+++|+-|-.|-. ..|.+|+++ .+|..|.. -..++.|++|
T Consensus 203 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~--~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG 280 (574)
T PRK06466 203 LLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLM--GLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVG 280 (574)
T ss_pred HHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCc--cCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEEC
Confidence 34444 5666677776556678999999999998887766 368887654 78877732 2569999999
Q ss_pred ccchhhhhhcc---CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAGM---RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G~---~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+. .....+|-||.||.--= ....|..|++|+.++|+.|++.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 337 (574)
T PRK06466 281 ARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKE 337 (574)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhh
Confidence 76333222222 23345888999987322 1236999999999999999987753
No 32
>PRK06154 hypothetical protein; Provisional
Probab=96.53 E-value=0.0077 Score=63.26 Aligned_cols=119 Identities=27% Similarity=0.344 Sum_probs=83.8
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCc---------eeCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~---------~V~P~lYia~ 298 (354)
-|..|+ -++-.|.|+...+..+.+.+||+.+|+-|-.|-- -.|.+|.+ ..+|..|. .=..++.|++
T Consensus 210 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~--gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~l 287 (565)
T PRK06154 210 LLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLN--GKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGI 287 (565)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCC--cccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEE
Confidence 355664 6666888887777889999999999998877633 25777644 45676552 2367999999
Q ss_pred cccchhhhhhc--cCCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAG--MRDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G--~~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|.+=.. ...| +...+.||-||.||+..=- ...|.+|++|+.++|++|+++|++
T Consensus 288 G~~l~~-~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 343 (565)
T PRK06154 288 GCSLTR-SYYGLPMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRR 343 (565)
T ss_pred CCCCcc-cccCccCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhh
Confidence 965111 1112 3445678889999975211 135999999999999999998764
No 33
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.53 E-value=0.0081 Score=62.95 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=83.6
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~ 298 (354)
-|.+|+ -+|-+|.|+......+.+.+||+++|+-|-.|-.. .|.+|+++ .+|..|. .-.++|.|++
T Consensus 207 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~--kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~l 284 (564)
T PRK08155 207 MINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMA--LGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVL 284 (564)
T ss_pred HHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--cccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEE
Confidence 344555 66777778776567889999999999998877555 57777554 6777654 2347999999
Q ss_pred cccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=...++.+ ......+|-||.|++--- +..+|+.|++|+.++|.+|++++++
T Consensus 285 G~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (564)
T PRK08155 285 GARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEA 342 (564)
T ss_pred CCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcc
Confidence 97522122211 222345777999987422 2246999999999999999987753
No 34
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.51 E-value=0.0096 Score=62.52 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=82.1
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~G 299 (354)
|.+|+ .+|-.|.|+......+.+.+||+++|+-|-.|-. -.|.+|.++ -+|.+|. .=.++|.|++|
T Consensus 212 L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~--~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG 289 (571)
T PRK07710 212 VSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLL--GLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIG 289 (571)
T ss_pred HHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCc--cCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeC
Confidence 34444 6667777776555678899999999998887754 357777665 6777763 22679999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCC-cccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAP-IFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=...++.+ +.....+|=||.||... -....|+.|++|+.++|..|++.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~ 346 (571)
T PRK07710 290 ARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGK 346 (571)
T ss_pred CCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhc
Confidence 7643333322 22223466799998631 11236999999999999999987653
No 35
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.50 E-value=0.011 Score=62.39 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=82.9
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce--------e-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI--------V-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~--------V-~P~lYia~G 299 (354)
|.+|+ -|+-.|.|+...+..+.+.+||+++|+-|-.|-. ..|.+|+++ .+|..|.. + ..+|.|++|
T Consensus 218 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~--gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG 295 (587)
T PRK06965 218 LLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLM--GLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIG 295 (587)
T ss_pred HHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc--cCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44554 5666888888777889999999999999887755 578888776 57776632 2 479999999
Q ss_pred cc--chhhh-hhcc-CCCcEEEEEcCCCCC-CcccccceEEeecHHHHHHHHHhhcc
Q 018528 300 VS--GAIQH-LAGM-RDSKVIVAVNKDADA-PIFQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 300 IS--Ga~QH-~~G~-~~s~~IVAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
-+ ..... ...+ .....+|-||.|+.- --....|+.+++|+.++|++|++.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 296 ARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred CCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 53 21100 0011 223567889999853 11123699999999999999998775
No 36
>PRK07524 hypothetical protein; Provisional
Probab=96.45 E-value=0.0094 Score=62.05 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=81.5
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCce-------eCCceEEEecc
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKI-------VAPELYMAFGV 300 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~-------V~P~lYia~GI 300 (354)
-|.+|+ .+|-.|.|+. +..+.+.+||+++|+-|-.|- -..|.+|++ ..+|.+|.. =..+|.|++|-
T Consensus 197 ~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~tt~--~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~ 272 (535)
T PRK07524 197 RLAAARRPLILAGGGAL--AAAAALRALAERLDAPVALTI--NAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGT 272 (535)
T ss_pred HHHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEEEcc--cccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCC
Confidence 345665 5556677775 456899999999999888773 235677653 467766532 16799999996
Q ss_pred c-chhh----hhhccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 301 S-GAIQ----HLAGMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 301 S-Ga~Q----H~~G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+ +... +.........+|-||.||+..- .-..|..|++|..++|..|++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 273 ELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred CcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 5 2111 1123433356889999996432 2247999999999999999998865
No 37
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.38 E-value=0.012 Score=61.85 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=81.8
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ -++-.|.|+......+.+.+||++||+-|-.|-- -.|.+|.++ .+|..|.. =..++.|++|
T Consensus 207 L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~--gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG 284 (566)
T PRK07282 207 LSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLL--GQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIG 284 (566)
T ss_pred HHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccc--cCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 34444 6666677876666678899999999999887743 357787775 67776642 2459999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCCCccc--ccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADAPIFQ--VADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=.-..+.+ +.....+|=||.||. -|-+ ..|..|++|+..+|..|++.++.
T Consensus 285 ~~l~~~~~~~~~~~~~~~~~i~id~d~~-~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 341 (566)
T PRK07282 285 SRFDDRLTGNPKTFAKNAKVAHIDIDPA-EIGKIIKTDIPVVGDAKKALQMLLAEPTV 341 (566)
T ss_pred CCCCccccCChhhcCCCCeEEEEECCHH-HhCCCCCCCeEEecCHHHHHHHHHHhhcc
Confidence 7733222211 122345777999985 2211 35899999999999999998753
No 38
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.37 E-value=0.013 Score=61.52 Aligned_cols=119 Identities=22% Similarity=0.282 Sum_probs=82.3
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCC---c------eeCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTG---K------IVAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG---~------~V~P~lYia~G 299 (354)
|.+|+ -+|-.|.|+......+.+++||+++|+-|-.|-.. .|.+|++ ..+|..| . .-.++|.|++|
T Consensus 204 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG 281 (572)
T PRK06456 204 LINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPG--KTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVG 281 (572)
T ss_pred HHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCcc--CcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEEC
Confidence 45554 67777888876667789999999999988766443 5777744 4577654 2 24689999999
Q ss_pred ccchhhhhhc---cCC-CcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRD-SKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~-s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=.---+.+ +.. ...+|-||.||+-.= .-.+|.+|++|+..+|..|++.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 339 (572)
T PRK06456 282 ARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITE 339 (572)
T ss_pred CCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhhh
Confidence 7622111111 111 345788999987421 1237999999999999999998753
No 39
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=96.35 E-value=0.0099 Score=62.59 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~ 298 (354)
-|.+|+ -++-+|.|+. +..+.+.+||+++|.-|..|= -..|++|.++ .+|.+|. .-..+|-|++
T Consensus 197 ~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~t~--~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~l 272 (578)
T PRK06546 197 AINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGHSL--RGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILL 272 (578)
T ss_pred HHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEECc--ccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEE
Confidence 455665 5666666664 456889999999999997762 2458887655 5676653 2367999999
Q ss_pred cccchhhhhhccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+ -..+. -..+ ..+|-||.|++.-- ....|+.|++|+..+|+.|++.|++
T Consensus 273 G~~-~~~~~-~~~~-~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~ 324 (578)
T PRK06546 273 GTD-FPYDQ-FLPD-VRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKE 324 (578)
T ss_pred cCC-CChhh-cCCC-CcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcc
Confidence 964 11111 1223 35888999998522 1246999999999999999998864
No 40
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.34 E-value=0.011 Score=61.47 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=79.2
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeeccc----HhhHhcCCCCCCceeccCCc-------ee-CCceEEEe
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGAT----RAVVDAGFVPNDLQVGQTGK-------IV-APELYMAF 298 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~S----Rp~vd~gw~p~~~qIGqtG~-------~V-~P~lYia~ 298 (354)
|.+|+ .+|-+|+|....+..+.+++||++||+-|-+| |.+++.. |...+|..|. .+ .++|-|++
T Consensus 203 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~---hp~~~G~~g~~~~~~~~~l~~aDlvl~l 279 (530)
T PRK07092 203 LDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPED---HPLFAGFLPASREKISALLDGHDLVLVI 279 (530)
T ss_pred HHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCC---CccccCcCCccHHHHHHHHhhCCEEEEE
Confidence 45555 66667888776667889999999999988654 3333322 2234665542 22 78999999
Q ss_pred cccchhhhhhcc----CCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGM----RDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~----~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=--.+..+. .....+|-||.|+...=-...|..|++|+..++++|++.++.
T Consensus 280 G~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~ 337 (530)
T PRK07092 280 GAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLPP 337 (530)
T ss_pred CCcccccccCCccccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhcc
Confidence 964111223232 224568889999975211235789999999999999998864
No 41
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.29 E-value=0.016 Score=61.21 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred CCCCc-EEEEeCccCCCh--hcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEE
Q 018528 232 LGSAR-IVVTGGRGLKSA--ENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMA 297 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~--e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia 297 (354)
|.+|+ -++-.|.|+... +..+.+.+||++||+-|-.|-. ..|.+|+++ .+|..|. .=..+|.|+
T Consensus 209 L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~--gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~ 286 (595)
T PRK09107 209 LANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM--GLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLC 286 (595)
T ss_pred HHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECcc--ccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEE
Confidence 44555 666667787543 4778999999999999887765 467887654 5776653 114799999
Q ss_pred ecccchhhhhhc---cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 298 FGVSGAIQHLAG---MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 298 ~GISGa~QH~~G---~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+|.+=....+.+ ......+|=||.||.--= ....|.+|++|+..+|.+|++++++
T Consensus 287 lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~ 345 (595)
T PRK09107 287 VGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKA 345 (595)
T ss_pred ECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhh
Confidence 996522222211 222344777999987532 2247999999999999999998753
No 42
>PRK05858 hypothetical protein; Provisional
Probab=96.28 E-value=0.0092 Score=62.28 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=80.5
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc--eeCCceEEEecccchhh-
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK--IVAPELYMAFGVSGAIQ- 305 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~--~V~P~lYia~GISGa~Q- 305 (354)
|.+|+ -++-.|.|....+..+.+.+||++||+-|-.|-- ..|.+|.++ .+|.... .-+.++.|++|.+=...
T Consensus 200 L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~--~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~ 277 (542)
T PRK05858 200 LAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM--GRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRL 277 (542)
T ss_pred HHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCC--cCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccc
Confidence 45554 5555677776566788999999999998887764 357777654 3444332 33779999999631000
Q ss_pred hhhccCCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhccc
Q 018528 306 HLAGMRDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 306 H~~G~~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
...-....+.+|-||.||...-. ...|++|++|+..++++|++.++.
T Consensus 278 ~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~ 325 (542)
T PRK05858 278 GFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGD 325 (542)
T ss_pred cccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhccc
Confidence 01112223568889999864332 246999999999999999988753
No 43
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=96.24 E-value=0.014 Score=60.95 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=82.2
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCC--CceeccCCc--------ee-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPN--DLQVGQTGK--------IV-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~--~~qIGqtG~--------~V-~P~lYia~G 299 (354)
|..|+ .+|-+|+|+...+..+.+.+||+.||+-|-.|-.. .|.+|. ....|..|. .+ .+++.|++|
T Consensus 193 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g--kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG 270 (548)
T PRK08978 193 LAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKG--LGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVG 270 (548)
T ss_pred HHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccc--CCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEc
Confidence 44454 66667778877677889999999999999887333 477774 456776652 22 789999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCC--CcccccceEEeecHHHHHHHHHhhcc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADA--PIFQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~A--pIf~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
-+=....+.+ +.....+|-||.||+- . ....|+.|++|+.++++.|.+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~~i~~d~~~~l~~l~~~~~ 326 (548)
T PRK08978 271 ARFDDRVTGKLNTFAPHAKVIHLDIDPAEINK-LRQAHVALQGDLNALLPALQQPLN 326 (548)
T ss_pred CCCCccccCCccccCCCCeEEEEECCHHHhCC-CCCCCeEEecCHHHHHHHHHHhcc
Confidence 7633333322 2223468889999852 2 124699999999999999987653
No 44
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=96.21 E-value=0.017 Score=60.51 Aligned_cols=119 Identities=25% Similarity=0.291 Sum_probs=82.7
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ .+|-+|.|+...+..+.+.+||+++|+-|-.|- -..|.+|+++ .+|..|.. -.+++.|++|
T Consensus 198 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~--~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG 275 (558)
T TIGR00118 198 INLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTL--MGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVG 275 (558)
T ss_pred HHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcc--ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44554 667777787766678899999999999998873 2457888664 57766532 2479999999
Q ss_pred ccchhhhhhcc---CCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAGM---RDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G~---~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=.-+.+.+. ..-..+|-||.|+.-.=. -..|..|++|..++|+.|++.++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~ 332 (558)
T TIGR00118 276 ARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFE 332 (558)
T ss_pred CCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhh
Confidence 65333333222 122357889999843111 135999999999999999998753
No 45
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.14 E-value=0.021 Score=60.25 Aligned_cols=120 Identities=25% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCce---------eCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKI---------VAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~---------V~P~lYia~ 298 (354)
-|.+|+ .++-+|.|+...+..+.+++||+.+|+-|-.|=.. .|.+|++ ..+|..|.. =..++-|++
T Consensus 196 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~g--kg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~l 273 (588)
T PRK07525 196 LLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLH--NDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLAL 273 (588)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccc--cccCCCCCccccccCcccCcHHHHHHHHhCCEEEEE
Confidence 356666 46777778777778899999999999988876322 4677754 567765522 256999999
Q ss_pred cccchhhhh---hc---cCCCcEEEEEcCCCCCC-cccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHL---AG---MRDSKVIVAVNKDADAP-IFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~---~G---~~~s~~IVAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|.+=.-.-. .+ ......||=||.|++-. -...+|++|++|+..+|++|++.+++
T Consensus 274 G~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (588)
T PRK07525 274 GTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAE 334 (588)
T ss_pred CCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhh
Confidence 965221101 01 11235688899999742 12357999999999999999998853
No 46
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.11 E-value=0.019 Score=60.95 Aligned_cols=118 Identities=23% Similarity=0.262 Sum_probs=81.2
Q ss_pred CCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc---------eeCCceEEEecc
Q 018528 233 GSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK---------IVAPELYMAFGV 300 (354)
Q Consensus 233 ~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~---------~V~P~lYia~GI 300 (354)
.+|+ .|+-+|.|+...+..+.+.+||++||+-|-.|-. ..|.+|.++ .+|..|. .-..+|.|++|.
T Consensus 222 ~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~--gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~ 299 (616)
T PRK07418 222 EEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLM--GKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGA 299 (616)
T ss_pred HhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccC--CCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcC
Confidence 3444 6666888887667788999999999998877654 357777554 4676653 236799999997
Q ss_pred cchhhhhh---ccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 301 SGAIQHLA---GMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 301 SGa~QH~~---G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+=-...+. .+.....+|=||.||.--= ....|++|++|+..+|++|++.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~ 355 (616)
T PRK07418 300 RFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLE 355 (616)
T ss_pred CCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhc
Confidence 52111111 1233345777999985211 1246999999999999999998854
No 47
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.10 E-value=0.023 Score=59.46 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=80.9
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce--------e-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI--------V-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~--------V-~P~lYia~G 299 (354)
|.+|+ .++-.|.|....+.++.+.+||+++|+-|-+|=. ..|.+|.++ .+|..|.. + .++|.|++|
T Consensus 201 L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~--~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG 278 (557)
T PRK08199 201 LARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR--RQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVG 278 (557)
T ss_pred HHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC--cCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeC
Confidence 44444 5555677877667789999999999999988732 356676554 46766542 2 689999999
Q ss_pred ccchhhhhhcc---C---CCcEEEEEcCCCCC--CcccccceEEeecHHHHHHHHHhhcc
Q 018528 300 VSGAIQHLAGM---R---DSKVIVAVNKDADA--PIFQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 300 ISGa~QH~~G~---~---~s~~IVAIN~D~~A--pIf~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
-+=.-..+.+. . ....+|-||.|+.. .-+ ..|+.|++|...+|+.|++.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~-~~~~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 279 TRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVY-RPDLAIVADPAAFAAALAALEP 337 (557)
T ss_pred CCCccccccccccccccCCCCeEEEEeCCHHHhCCcc-CCCeEEecCHHHHHHHHHhccc
Confidence 75322222222 1 23468889999863 222 4699999999999999988654
No 48
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=96.09 E-value=0.022 Score=60.28 Aligned_cols=117 Identities=21% Similarity=0.213 Sum_probs=79.8
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCc---------eeCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~---------~V~P~lYia~ 298 (354)
-|.+|+ .++-.|.|+. +..+.+.+||+++|+-|-+|-. ..|.+|++ ..+|..|. .=..+|.|++
T Consensus 204 ~L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~PV~tt~~--gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~l 279 (597)
T PRK08273 204 VLNAGRKVAILVGAGAL--GATDEVIAVAERLGAGVAKALL--GKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMV 279 (597)
T ss_pred HHhcCCCEEEEECcchH--hHHHHHHHHHHHhCCceeeccc--CcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEe
Confidence 345555 6666777875 4577899999999999988832 45566544 56776652 2347899999
Q ss_pred cccchhhhhhccC-CCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGMR-DSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~~-~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=- .+...-+ .-..+|-||.||+..- .-..|..|++|+..++++|++.+++
T Consensus 280 G~~~~-~~~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (597)
T PRK08273 280 GSSFP-YSEFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLER 334 (597)
T ss_pred CCCCC-HHhcCCCCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhc
Confidence 97621 1111111 1235788999987533 2236899999999999999998764
No 49
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=95.95 E-value=0.028 Score=59.11 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCce--eCCceEEEecccchh-h
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKI--VAPELYMAFGVSGAI-Q 305 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~--V~P~lYia~GISGa~-Q 305 (354)
|.+|+ .++-.|.|+...+..+.+++||++||+-|-.|=- -.|-+|.+ ...|..... -..+|.|++|-+-.. +
T Consensus 217 L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~--gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~ 294 (569)
T PRK08327 217 LAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAG--EVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIP 294 (569)
T ss_pred HHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCC--CceeCCCCCccccccccchhhhhCCEEEEeCCCCCCcc
Confidence 34444 5555666877677889999999999998875422 23555544 446655322 258999999975322 1
Q ss_pred hhhccCCCcEEEEEcCCCCC-C---cccccceEEeecHHHHHHHHHhhccc
Q 018528 306 HLAGMRDSKVIVAVNKDADA-P---IFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 306 H~~G~~~s~~IVAIN~D~~A-p---If~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+...+.....+|=||.|+.. . -.-..|+.|++|+..++++|++++++
T Consensus 295 ~~~~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 345 (569)
T PRK08327 295 KKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKS 345 (569)
T ss_pred ccccCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhh
Confidence 22122334567889999863 1 12346999999999999999998864
No 50
>PRK07064 hypothetical protein; Provisional
Probab=95.86 E-value=0.023 Score=59.25 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=80.5
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc------e-eCCceEEEeccc
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK------I-VAPELYMAFGVS 301 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~------~-V~P~lYia~GIS 301 (354)
|.+|+ -+|-+|.|+. +..+.+++||+ +|+-|-+|-.. .|.+|+++ .+|..|- . -.++|-|++|-+
T Consensus 200 l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~pv~~t~~~--kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~ 274 (544)
T PRK07064 200 LAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFGVVTSTQG--RGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSR 274 (544)
T ss_pred HHhCCCCEEEECCChH--hHHHHHHHHHH-cCCCEEEccCc--cccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCC
Confidence 44554 6666667765 33467899999 99998776433 47787654 6776551 1 258999999986
Q ss_pred chhhhhhccC--CCcEEEEEcCCCCCC-cccccceEEeecHHHHHHHHHhhccc
Q 018528 302 GAIQHLAGMR--DSKVIVAVNKDADAP-IFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 302 Ga~QH~~G~~--~s~~IVAIN~D~~Ap-If~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
=.-..+.+.. .-+.+|-||.||+.. -+...|+.+.+|...+|++|++.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~ 328 (544)
T PRK07064 275 LRGNETLKYSLALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEG 328 (544)
T ss_pred CCcccccccccCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhh
Confidence 4433333321 124588899998743 24457999999999999999998754
No 51
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=95.79 E-value=0.021 Score=59.76 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc--eeCCceEEEecccchhh
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK--IVAPELYMAFGVSGAIQ 305 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~--~V~P~lYia~GISGa~Q 305 (354)
-|.+|+ -++-.|.|+...+..+.+.+||+++|+-|-.|--. .|.+|.++ ..|.++. .=..+|.|++|-+=.-.
T Consensus 202 ~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~ 279 (554)
T TIGR03254 202 LLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMA--KGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWL 279 (554)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCc--ceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchh
Confidence 345654 56666777766677889999999999988766543 46677553 4666664 23569999999663322
Q ss_pred hhhcc----CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 306 HLAGM----RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 306 H~~G~----~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
.+.|. ...+.||=||.||+.-= ....|..|++|+.++|.+|++.+++
T Consensus 280 ~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 331 (554)
T TIGR03254 280 LSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKN 331 (554)
T ss_pred hccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhhh
Confidence 22221 22345777888876421 2245899999999999999998853
No 52
>PLN02470 acetolactate synthase
Probab=95.71 E-value=0.041 Score=58.02 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCce---------eCCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGKI---------VAPELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~~---------V~P~lYia~G 299 (354)
|.+|+ .++-+|.|+. ...+.+.+||+++|+-|-.|-. ..|.+|.++ .+|..|.. -.++|.|++|
T Consensus 212 L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~~pv~tt~~--gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG 287 (585)
T PLN02470 212 ISESKRPVVYVGGGCL--NSSEELREFVELTGIPVASTLM--GLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFG 287 (585)
T ss_pred HHcCCCCEEEECCChh--hhHHHHHHHHHHhCCCEEEccC--ccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44544 5555666775 3567899999999998865554 367787665 37776642 2479999999
Q ss_pred ccchhhhhhc---cCCCcEEEEEcCCCCC-CcccccceEEeecHHHHHHHHHhhccc
Q 018528 300 VSGAIQHLAG---MRDSKVIVAVNKDADA-PIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 300 ISGa~QH~~G---~~~s~~IVAIN~D~~A-pIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
-+=....+.+ +.....+|=||.|+.- .-....|.+|++|+..+|..|++++++
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 344 (585)
T PLN02470 288 VRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEE 344 (585)
T ss_pred CCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhh
Confidence 8632222221 1222346779999842 001236999999999999999998764
No 53
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=95.67 E-value=0.044 Score=57.58 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=76.3
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCC--ceeccCCce---------eCCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPND--LQVGQTGKI---------VAPELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~--~qIGqtG~~---------V~P~lYia~ 298 (354)
-|.+|+ -++-+|.|.. +..+.+.+||+++|+-|-+|-. ..|.+|.+ ..+|..|.. -.++|-|++
T Consensus 197 ~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~PV~tt~~--gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~l 272 (574)
T PRK09124 197 LLNGSSNITLLCGSGCA--GAHDELVALAETLKAPIVHALR--GKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLML 272 (574)
T ss_pred HHHcCCCCEEEECcChH--hHHHHHHHHHHHhCCceEEccc--ccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEE
Confidence 344544 4444556763 4567899999999999887744 34566544 467766522 247999999
Q ss_pred cccchhhhhhccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQHLAGMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH~~G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-+=..... ......+|-||.|+.--= ....|+.|++|+.+++.+|++.+++
T Consensus 273 G~~~~~~~~--~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 325 (574)
T PRK09124 273 GTDFPYRQF--YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEE 325 (574)
T ss_pred CCCCCcccc--cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhhc
Confidence 965322111 122245777999986311 1136999999999999999987753
No 54
>PRK08266 hypothetical protein; Provisional
Probab=95.60 E-value=0.024 Score=59.04 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCC---ceeCCceEEEecccchhh
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTG---KIVAPELYMAFGVSGAIQ 305 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG---~~V~P~lYia~GISGa~Q 305 (354)
|.+|+ -+|-+|.|.. +..+.+.+||+++|+-|-.|... .|.+|+++ ..|..+ ..-.++|.|++|-+=..+
T Consensus 202 L~~AkrPvIv~G~g~~--~a~~~l~~lae~~g~pv~tt~~~--kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~ 277 (542)
T PRK08266 202 IAAAKNPMIFVGGGAA--GAGEEIRELAEMLQAPVVAFRSG--RGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP 277 (542)
T ss_pred HHhCCCCEEEECCChh--hHHHHHHHHHHHHCCCEEEeccc--cccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc
Confidence 44444 5666666753 46788999999999988877644 57777443 455432 123689999999753323
Q ss_pred hhhcc---CCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 306 HLAGM---RDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 306 H~~G~---~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+.+. .....+|-||.|++---....|+.|++|+..+|++|++.+++
T Consensus 278 -~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 326 (542)
T PRK08266 278 -TFRWPWRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALSK 326 (542)
T ss_pred -cccccccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhhh
Confidence 3232 223468889998775111246999999999999999998764
No 55
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.53 E-value=0.028 Score=59.07 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=83.0
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCce--eccCCc--eeCCceEEEecccchhhh
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQ--VGQTGK--IVAPELYMAFGVSGAIQH 306 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~q--IGqtG~--~V~P~lYia~GISGa~QH 306 (354)
|.+|+ -++-+|.|+...+..+.+.+||+++|+-|-.|=.. .|.+|+++. +|.++. .=..+|.|++|-+=.-..
T Consensus 210 L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~g--kg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~ 287 (569)
T PRK09259 210 LKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMA--KGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLL 287 (569)
T ss_pred HHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccc--cccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhc
Confidence 44555 67777788776677899999999999988766543 578887654 676654 336899999996521111
Q ss_pred hhc----cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 307 LAG----MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 307 ~~G----~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
..+ +..-..||=||.|++..- ....++.|++|+..+|++|++.+++
T Consensus 288 ~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 338 (569)
T PRK09259 288 SHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQ 338 (569)
T ss_pred ccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhh
Confidence 111 112245777888887532 2246899999999999999998863
No 56
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=95.44 E-value=0.056 Score=54.82 Aligned_cols=116 Identities=19% Similarity=0.128 Sum_probs=75.2
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeeccc---HhhHhcCCCCCCceeccC---------CceeCCceEEE
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGAT---RAVVDAGFVPNDLQVGQT---------GKIVAPELYMA 297 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~S---Rp~vd~gw~p~~~qIGqt---------G~~V~P~lYia 297 (354)
.|.+|+ -++-+|.|+... ..+.+.+||+++|+-|-.| |-.++.. ..+|.- -+.+.++|.|+
T Consensus 207 ~l~~AkrPvi~~G~g~~~~-a~~~l~~lae~~~~PV~tt~~~~~~~~~~-----~~~G~~~~~~~~~~~~~~~~aDlvl~ 280 (432)
T TIGR00173 207 RLNQAKRGVIVAGPLPPAE-DAEALAALAEALGWPLLADPLSGLRGGPH-----LVIDHYDLLLANPELREELQPDLVIR 280 (432)
T ss_pred HHhhcCCcEEEEcCCCcHH-HHHHHHHHHHhCCCeEEEeCCCCCCCCCC-----CCcCHHHHHhcCCchhhhCCCCEEEE
Confidence 344554 455677777643 6788999999999987765 3333321 223311 13358999999
Q ss_pred eccc-chhhhhhcc-CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 298 FGVS-GAIQHLAGM-RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 298 ~GIS-Ga~QH~~G~-~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+|-. +.......+ .....+|-|+.||...= +...|.+|++|+.+++.+|++.+++
T Consensus 281 lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~ 338 (432)
T TIGR00173 281 FGGPPVSKRLRQWLARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKN 338 (432)
T ss_pred eCCCcchhHHHHHHhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCC
Confidence 9965 222222222 22345788999986421 2346999999999999999988754
No 57
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=95.43 E-value=0.052 Score=57.14 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=80.9
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCC--CceeccCCce--------e-CCceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPN--DLQVGQTGKI--------V-APELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~--~~qIGqtG~~--------V-~P~lYia~ 298 (354)
-|.+|+ .++-.|.|+...+..+.+.+||+++|+-|-.|-.. .|-+|+ ...+|..|.. + ..+|.|++
T Consensus 192 ~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g--kg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~l 269 (579)
T TIGR03457 192 LLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLH--NDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLAL 269 (579)
T ss_pred HHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccc--cccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEE
Confidence 345666 46677778777778899999999999998877433 355554 4567765532 2 57999999
Q ss_pred cccchhhhhh---c---cCCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhcc
Q 018528 299 GVSGAIQHLA---G---MRDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 299 GISGa~QH~~---G---~~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
|-+=...... + ......+|-||.|+.-.=. -..|++|++|+..+|++|++.++
T Consensus 270 G~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 270 GTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred CCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 9542211110 0 1223567789998864211 13699999999999999999885
No 58
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.88 E-value=0.11 Score=54.38 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=75.1
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc--------ee-CCceEEEec
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK--------IV-APELYMAFG 299 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~--------~V-~P~lYia~G 299 (354)
|.+|+ .|+-+|.|.. ...+.+++||+++|+-|-.| .--.|.+|+++ .+|..|. .+ .++|-|++|
T Consensus 192 L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt--~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG 267 (549)
T PRK06457 192 IKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYT--LNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLG 267 (549)
T ss_pred HHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEc--ccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEEC
Confidence 44453 5555666765 33478999999999999888 55678888654 7777662 22 589999999
Q ss_pred ccchhhhhhccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHH
Q 018528 300 VSGAIQHLAGMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELL 347 (354)
Q Consensus 300 ISGa~QH~~G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~ 347 (354)
.+ .....=......+|-||.|+...= ...+|..|++|+..++..+.
T Consensus 268 ~~--~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~ 314 (549)
T PRK06457 268 TS--FPYVNFLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDI 314 (549)
T ss_pred CC--CChhhcCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHh
Confidence 65 222111222346888999986421 22579999999999996544
No 59
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=94.76 E-value=0.11 Score=54.62 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=73.8
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCC--CCceeccCCc---------eeCCceEEEecccchh-
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVP--NDLQVGQTGK---------IVAPELYMAFGVSGAI- 304 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p--~~~qIGqtG~---------~V~P~lYia~GISGa~- 304 (354)
-++-+|.|..+ ..+.+.+||++||+-|-.|-.. .|-+| |..-.|..|. .-..+|.|++|.+=-.
T Consensus 203 Pvil~G~g~~~--a~~~l~~lae~l~~PV~tt~~g--kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~ 278 (575)
T TIGR02720 203 PVIYYGIGARK--AGEELEALSEKLKIPLISTGLA--KGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFA 278 (575)
T ss_pred cEEEECcchhh--HHHHHHHHHHHhCCCEEEcccc--cccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcc
Confidence 44445566653 4478999999999987766554 34444 4445665553 2358999999975211
Q ss_pred hhhhccCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 305 QHLAGMRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 305 QH~~G~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+..--++..+.+|-||.|+...= .-..|+.|++|...+|.+|++.+++
T Consensus 279 ~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (575)
T TIGR02720 279 EVSKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEP 327 (575)
T ss_pred ccccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccc
Confidence 11111334566688999886421 1246899999999999999998864
No 60
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.73 E-value=0.15 Score=53.55 Aligned_cols=119 Identities=29% Similarity=0.350 Sum_probs=80.4
Q ss_pred CCCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCce--eccCCcee--------C-CceEEEe
Q 018528 231 DLGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQ--VGQTGKIV--------A-PELYMAF 298 (354)
Q Consensus 231 ~L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~q--IGqtG~~V--------~-P~lYia~ 298 (354)
-|.+|+ -|+=.|.|+...+..+.+.+||+++|+=|-+|=.. .|-+|+++- .|..|..- . .+|-|++
T Consensus 196 ~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~g--kg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~v 273 (550)
T COG0028 196 LLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMG--KGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAV 273 (550)
T ss_pred HHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCc--CccCCCCCccccccccccccHHHHHHhhcCCEEEEe
Confidence 355565 66667777777788899999999999988777442 466666655 67666553 3 7899999
Q ss_pred cccchhhh--hhccC-CCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhccc
Q 018528 299 GVSGAIQH--LAGMR-DSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 299 GISGa~QH--~~G~~-~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|-.=---. ..+.- ..+ ||=|+.||.--- .-..|++|+||+.++|.+|++++++
T Consensus 274 G~rf~~~~~~~~~f~~~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~ 330 (550)
T COG0028 274 GARFDDRVTGYSGFAPPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP 330 (550)
T ss_pred cCCCcccccchhhhCCcCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence 87211000 11111 212 777888863211 2237999999999999999998874
No 61
>PRK08611 pyruvate oxidase; Provisional
Probab=94.36 E-value=0.16 Score=53.43 Aligned_cols=110 Identities=22% Similarity=0.350 Sum_probs=73.7
Q ss_pred cEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCC--CceeccCCc--------ee-CCceEEEecccchh
Q 018528 236 RIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPN--DLQVGQTGK--------IV-APELYMAFGVSGAI 304 (354)
Q Consensus 236 ~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~--~~qIGqtG~--------~V-~P~lYia~GISGa~ 304 (354)
+-||-+|.|+.. ..+.+.+||+++|+-|-.|-+. .|.+|. ...+|..|. .+ .++|.|++|.+=..
T Consensus 205 rPvil~G~g~~~--a~~~l~~lae~~~~PV~tt~~g--kg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~ 280 (576)
T PRK08611 205 KPVILAGLGAKH--AKEELLAFAEKAKIPIIHTLPA--KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPY 280 (576)
T ss_pred CcEEEECcCcch--HHHHHHHHHHHhCCCEEEcccc--ccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCc
Confidence 345555666642 4578999999999998877554 455543 344665542 23 48999999976321
Q ss_pred hhhhccCCCcEEEEEcCCCCCCccc--ccceEEeecHHHHHHHHHhhccc
Q 018528 305 QHLAGMRDSKVIVAVNKDADAPIFQ--VADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 305 QH~~G~~~s~~IVAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
.-. ......+|-||.|+.- |-+ ..|..|++|...+|..|++++++
T Consensus 281 ~~~--~~~~~~~i~id~d~~~-i~~~~~~~~~i~~D~~~~l~~L~~~l~~ 327 (576)
T PRK08611 281 VDY--LPKKAKAIQIDTDPAN-IGKRYPVNVGLVGDAKKALHQLTENIKH 327 (576)
T ss_pred ccc--CCCCCcEEEEeCCHHH-cCCccCCCeeEecCHHHHHHHHHHhccc
Confidence 111 1112458889999853 211 36999999999999999998764
No 62
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=91.23 E-value=0.39 Score=50.13 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCCc----------eeCCceEEEe
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTGK----------IVAPELYMAF 298 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG~----------~V~P~lYia~ 298 (354)
|.+|+ -++-+|.|+......+.+.+||+++|+-|-.|--. .|.+|+++ .+|..|- .=..+|.|++
T Consensus 202 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~g--kg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~l 279 (539)
T TIGR03393 202 LAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMG--KGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICV 279 (539)
T ss_pred HHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECccc--CccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEE
Confidence 44555 44446778865567789999999999988766443 45555444 6776531 1245999999
Q ss_pred cccchhhhhhc----cCCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhcc
Q 018528 299 GVSGAIQHLAG----MRDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 299 GISGa~QH~~G----~~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
|-+=.--.+.+ +.. +.+|=||.|+..-- ....|+.+ +|...+|.+|++.++
T Consensus 280 G~~l~~~~~~~~~~~~~~-~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 280 GVRFTDTITAGFTHQLTP-EQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred CCcccccccceeeccCCc-ccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 96411111111 222 34566777764311 22467887 999999999998774
No 63
>PLN02573 pyruvate decarboxylase
Probab=90.60 E-value=0.66 Score=49.00 Aligned_cols=111 Identities=22% Similarity=0.294 Sum_probs=72.9
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccC-Cc--------e-eCCceEEEecccchh
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQT-GK--------I-VAPELYMAFGVSGAI 304 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqt-G~--------~-V~P~lYia~GISGa~ 304 (354)
-++-.|.|+...+..+.+.+||+++|+-|-.|=-. .|.+|++| .+|.. |. . =..+|.|++|.+ =-
T Consensus 227 Pvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~g--kg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~-l~ 303 (578)
T PLN02573 227 PVLVGGPKLRVAKACKAFVELADASGYPVAVMPSA--KGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPI-FN 303 (578)
T ss_pred CEEEEChhhcccchHHHHHHHHHHhCCCEEECccc--CCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCc-cC
Confidence 34557788876677889999999999988755332 57777665 67765 42 1 246999999953 00
Q ss_pred hhhh----ccCCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 305 QHLA----GMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 305 QH~~----G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
++.. .......+|-||.|+.. |-+..+++++ |+..++..|++.+++
T Consensus 304 ~~~~~~~~~~~~~~~~I~id~d~~~-i~~~~~~~~~-~~~~~l~~L~~~l~~ 353 (578)
T PLN02573 304 DYSSVGYSLLLKKEKAIIVQPDRVT-IGNGPAFGCV-LMKDFLEALAKRVKK 353 (578)
T ss_pred CcccccccccCCCCcEEEEeCCEEE-ECCcceECCc-CHHHHHHHHHHHhhc
Confidence 0000 01223446678988864 2222478877 899999999998754
No 64
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=89.83 E-value=0.46 Score=44.42 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCceEEEecccchhhhhhcc----CCCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHH
Q 018528 291 APELYMAFGVSGAIQHLAGM----RDSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPEL 346 (354)
Q Consensus 291 ~P~lYia~GISGa~QH~~G~----~~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l 346 (354)
+.++.|.+|-|+++.-..++ +.-..+|.||.+|...-. +.+||-|-||+.++||.|
T Consensus 175 ~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 175 EADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred cCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 47889999999888744432 222446679999855331 678999999999999975
No 65
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=89.76 E-value=0.59 Score=43.14 Aligned_cols=55 Identities=29% Similarity=0.595 Sum_probs=41.9
Q ss_pred CCceEEEecccchhh------hhhccCCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHH
Q 018528 291 APELYMAFGVSGAIQ------HLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELL 347 (354)
Q Consensus 291 ~P~lYia~GISGa~Q------H~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~ 347 (354)
+.++.|-+|-|+.++ +.+-.+++ .+|-||.+|. ++-+.+|+.|-||+.++||.|+
T Consensus 164 ~~dl~lvlGTsl~v~p~~~l~~~~~~~~~-~~i~iN~~~~-~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 164 KADLFLVIGTSGVVYPAAGLPEEAKERGA-RVIEINPEPT-PLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred cCCEEEEECcCccchhHHHHHHHHHHCCC-eEEEECCCCC-CCCCcCCEEEECCHHHHHHHhC
Confidence 578999999888776 22233444 4667999976 4558899999999999999873
No 66
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=89.12 E-value=0.73 Score=43.12 Aligned_cols=56 Identities=29% Similarity=0.472 Sum_probs=43.8
Q ss_pred ceEEEecccchhhhhhc------cCCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhc
Q 018528 293 ELYMAFGVSGAIQHLAG------MRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKF 350 (354)
Q Consensus 293 ~lYia~GISGa~QH~~G------~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l 350 (354)
++.|.+|-|.++.-... .+++ .+|.||.+|. ++=+.+|+.|-+|+.++||.|.+.|
T Consensus 179 dl~lviGTsl~V~p~~~l~~~~~~~~~-~~i~iN~~~~-~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 179 DLFIVIGTSLVVYPAAGLPYEAREHGA-KTVEINLEPT-PLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred CEEEEECCCceEcCHhHHHHHHHHCCC-eEEEECCCCC-CCCCccCEEEECCHHHHHHHHHHHh
Confidence 88999999988743222 2333 4788999985 5666689999999999999998876
No 67
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=88.72 E-value=3.8 Score=38.24 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=66.4
Q ss_pred ccccceeEEEEEecCCccChHHHHHHHHHHhc-CCCCcEEEEEE--cCCC----C-------HHHHHHHHhhcCCCccEE
Q 018528 22 ISRSISTLVLGEHENGSIKSQSLSAVEAAKSL-SDDNSVSMLLA--GSGP----S-------FNEAVKHAASSHPSISQV 87 (354)
Q Consensus 22 ~~~~~~IlV~~E~~~g~l~~~slell~~A~~L-a~~~~V~avv~--G~~~----~-------~~~~a~~l~~~~~GaD~V 87 (354)
....+.+|++.-|.+.+- +-.=..-.++ .++.+|..+++ |... . ..++.+.+. ..|++++
T Consensus 7 ~~~~~~vL~v~aHPDDe~----~g~ggtla~~~~~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~--~LGv~~~ 80 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEE----IGCGGTLAKLAARGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAAR--VLGVRET 80 (237)
T ss_pred cccCCcEEEEecCCcchh----hccHHHHHHHHHCCCeEEEEEccCCcccccCCccchHHHHHHHHHHHHH--hcCCCcc
Confidence 445678999999976532 1111111222 22567777765 3210 1 122333333 6899999
Q ss_pred EEEeCC-CCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCC
Q 018528 88 LVADSD-KFAYPIAEPWAKLVHMIQQREKYSHIISASGSF 126 (354)
Q Consensus 88 ~~~~~~-~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~ 126 (354)
+.++.+ .+..++.+.....|.+++++.+|+.|+......
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d 120 (237)
T COG2120 81 IFLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYPDD 120 (237)
T ss_pred eecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCCCC
Confidence 999988 677789999999999999999999999887666
No 68
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=88.58 E-value=0.9 Score=42.71 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=44.2
Q ss_pred CceEEEecccchhhhhhcc-----CCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcc
Q 018528 292 PELYMAFGVSGAIQHLAGM-----RDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G~-----~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
.++.|.+|-|.++.=...+ +....||-||.+|. |+=+.+|+.|.+|+-+++|.|++.+.
T Consensus 179 aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t-~~d~~~~~~i~~~~~~~l~~l~~~~~ 242 (244)
T PRK14138 179 ASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGET-PLDDIATLKYNMDVVEFANRVMSEGG 242 (244)
T ss_pred CCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 5788889998887644443 12334677999754 45567899999999999999998654
No 69
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=87.94 E-value=0.95 Score=42.57 Aligned_cols=61 Identities=18% Similarity=0.330 Sum_probs=46.2
Q ss_pred CCceEEEecccchhhhhhccC-----CCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 291 APELYMAFGVSGAIQHLAGMR-----DSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 291 ~P~lYia~GISGa~QH~~G~~-----~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
+.+|.|.+|-|+++.=.+.+- .-..||-||.+|.-.-. .+|+-+.|+..+++|+|.+++.+
T Consensus 172 ~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~-~~~~~i~g~~~~~l~~l~~~~~~ 237 (242)
T PTZ00408 172 KTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS-QFDESIYGKASVIVPAWVDRVLK 237 (242)
T ss_pred hCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc-cCCEEEECCHHHHHHHHHHHHHh
Confidence 478999999999887444322 22357789999865553 57889999999999999887754
No 70
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=87.58 E-value=1.7 Score=38.79 Aligned_cols=113 Identities=21% Similarity=0.278 Sum_probs=76.8
Q ss_pred cEEEEeCccCCC-hhcHHHHHHHHHHhCCeeccc----HhhHhcCCCCCCceeccCCcee------------CCceEEEe
Q 018528 236 RIVVTGGRGLKS-AENFKMIEKLAEKLGAAVGAT----RAVVDAGFVPNDLQVGQTGKIV------------APELYMAF 298 (354)
Q Consensus 236 ~iVV~~GrG~~~-~e~~~~~~~LA~~lga~vG~S----Rp~vd~gw~p~~~qIGqtG~~V------------~P~lYia~ 298 (354)
+-++-.|.|+.. .+..+.+.+||+.++.-+-.| +..++.|.+|...-+|..|... ..+|-|.+
T Consensus 36 rPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~g~~~~Dlvlfv 115 (171)
T PRK00945 36 RPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLDGNGNYDLVIFI 115 (171)
T ss_pred CcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhcCCCCcCEEEEe
Confidence 346666777766 778899999999999765544 5578889998877777777766 35788888
Q ss_pred cc--cchhhhhhccCCCcEEEEEcCCCCCCcccccceEE----eecHHHHHHHHHhhc
Q 018528 299 GV--SGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGL----VGDLFEVIPELLEKF 350 (354)
Q Consensus 299 GI--SGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygi----VgD~~~vlp~l~~~l 350 (354)
|+ .=+-|-+++.|+---+..|.-|+.= -..|||-. -.|+++.|.+|++.|
T Consensus 116 G~~~~~~~~~l~~lk~f~~~~~~~~~~~y--~~~a~~s~~~~~~~~~~~~l~~li~~~ 171 (171)
T PRK00945 116 GVTYYYASQGLSALKHFSPLKTITIDRYY--HPNADMSFPNLSKEEYLEYLDELIDNL 171 (171)
T ss_pred cCCchhHHHHHHHHhhcCCceEEEecCCc--CCCCceecCCCCHHHHHHHHHHHHhhC
Confidence 87 3456777777733325555555332 34566654 456777777777643
No 71
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=83.02 E-value=2.8 Score=37.10 Aligned_cols=109 Identities=25% Similarity=0.336 Sum_probs=71.4
Q ss_pred cEEEEeCccCCChhcHHHHHHHHHHhCCeecc----cHhhHhcCCCCCCceeccCCceeC------------CceEEEec
Q 018528 236 RIVVTGGRGLKSAENFKMIEKLAEKLGAAVGA----TRAVVDAGFVPNDLQVGQTGKIVA------------PELYMAFG 299 (354)
Q Consensus 236 ~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~----SRp~vd~gw~p~~~qIGqtG~~V~------------P~lYia~G 299 (354)
+-++-.|.|+...+..+.+++||+++|.-|-. .||.+|.|.+++..-+|..|...+ .+|-|.+|
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG 108 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLG 108 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeC
Confidence 45666677777677889999999999975544 466689999877777777776543 47888888
Q ss_pred ccc--hhhhhhccC-CCcEEEEEcCCCCCCcccccceEE----eecHHHHHHHHH
Q 018528 300 VSG--AIQHLAGMR-DSKVIVAVNKDADAPIFQVADYGL----VGDLFEVIPELL 347 (354)
Q Consensus 300 ISG--a~QH~~G~~-~s~~IVAIN~D~~ApIf~~aDygi----VgD~~~vlp~l~ 347 (354)
+.= +-|-+++.| .| .+..|--|+.= -..|||-. -.++++.|.+++
T Consensus 109 ~~~y~~~~~ls~lk~f~-~~~~i~l~~~y--~pnA~~Sf~n~~~~~~~~~l~~~~ 160 (162)
T TIGR00315 109 IIYYYLSQMLSSLKHFS-HIVTIAIDKYY--QPNADYSFPNLSKDEYLDYLRKLL 160 (162)
T ss_pred CcchHHHHHHHHHHhhc-CcEEEEecCCC--CCCCceeccccCHHHHHHHHHHHh
Confidence 843 456677777 44 55444444222 34666665 334455554443
No 72
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=82.82 E-value=4.1 Score=48.46 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=70.4
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHhCCeecccHhh-H----hcCCCCC--C--ceeccCCc---------eeCCceEEEe
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAV-V----DAGFVPN--D--LQVGQTGK---------IVAPELYMAF 298 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~-v----d~gw~p~--~--~qIGqtG~---------~V~P~lYia~ 298 (354)
-|+-+|.|....+.. .+.+||+.||+-|-+|-.. . ..|.+|. + ..+|..|. .-.|++.|++
T Consensus 527 PvIvaG~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~i 605 (1655)
T PLN02980 527 GLLLIGAIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQI 605 (1655)
T ss_pred cEEEEcCCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEe
Confidence 455556676543333 4589999999988766432 1 1366766 3 35555443 1279999999
Q ss_pred cccchhhhhhc-cC--CCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHHHHhhc
Q 018528 299 GVSGAIQHLAG-MR--DSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPELLEKF 350 (354)
Q Consensus 299 GISGa~QH~~G-~~--~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~l~~~l 350 (354)
|-+=...++.+ .. ....+|-||.||.--= ....|.+|++|+.+++..|++.+
T Consensus 606 G~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~ 661 (1655)
T PLN02980 606 GSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQ 661 (1655)
T ss_pred CCccccHHHHHHHHhCCCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhcc
Confidence 95411122221 11 1234788999876421 34568999999999999887643
No 73
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=81.32 E-value=22 Score=32.46 Aligned_cols=99 Identities=16% Similarity=0.183 Sum_probs=61.5
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWA 104 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a 104 (354)
++|.|++-..+ +.+++|-.|.+-+. +.++.+|+-... .....+.+. .+|+...+ ++...+. +-++|-
T Consensus 1 ~ki~VlaSG~G-----SNlqaiida~~~~~~~a~i~~Visd~~--~A~~lerA~--~~gIpt~~-~~~k~~~--~r~~~d 68 (200)
T COG0299 1 KKIAVLASGNG-----SNLQAIIDAIKGGKLDAEIVAVISDKA--DAYALERAA--KAGIPTVV-LDRKEFP--SREAFD 68 (200)
T ss_pred CeEEEEEeCCc-----ccHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHH--HcCCCEEE-eccccCC--CHHHHH
Confidence 46777776554 46777766666333 467877766543 122334444 47998644 4544343 567899
Q ss_pred HHHHHHHHhcCccEEEeCCCCCccchHHHHHHHc
Q 018528 105 KLVHMIQQREKYSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL 138 (354)
..|.+.+++.+||+|++.. +-|-|.|.+=.++
T Consensus 69 ~~l~~~l~~~~~dlvvLAG--yMrIL~~~fl~~~ 100 (200)
T COG0299 69 RALVEALDEYGPDLVVLAG--YMRILGPEFLSRF 100 (200)
T ss_pred HHHHHHHHhcCCCEEEEcc--hHHHcCHHHHHHh
Confidence 9999999999999998764 2233444444444
No 74
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=80.72 E-value=6.6 Score=41.20 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=67.9
Q ss_pred CcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eeccCC---------cee-CCceEEEecccc
Q 018528 235 ARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQTG---------KIV-APELYMAFGVSG 302 (354)
Q Consensus 235 A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGqtG---------~~V-~P~lYia~GISG 302 (354)
-+.++-.|.|..... +.+.+||+++|+-|-.|--. .|.+|+++ .+|..| ..+ .+++-|++|.+=
T Consensus 222 krPvii~G~g~~~~~--~~l~~lae~~g~PV~tt~~~--~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l 297 (568)
T PRK07449 222 KRGVVIAGRLSAEEG--QAIAALAQLLGWPLLADPLS--PRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPP 297 (568)
T ss_pred CCeEEEECCCChHHH--HHHHHHHHHCCCeEEEecCC--CCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCC
Confidence 456666666776443 88999999999987655433 35577554 465332 234 689999999641
Q ss_pred hhhhhhcc--CCCcEEEEEcCCCCCCc-ccccceEEeecHHHHHHH
Q 018528 303 AIQHLAGM--RDSKVIVAVNKDADAPI-FQVADYGLVGDLFEVIPE 345 (354)
Q Consensus 303 a~QH~~G~--~~s~~IVAIN~D~~ApI-f~~aDygiVgD~~~vlp~ 345 (354)
....+.+. ...+.+|-||.|+..-= ....|..|++|+.++|+.
T Consensus 298 ~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 298 TSKRLLQWLADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred CchhHHHHHhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 11112111 11225667898886421 224689999999999987
No 75
>PRK12474 hypothetical protein; Provisional
Probab=79.91 E-value=6.3 Score=40.94 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=27.0
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeeccc
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGAT 268 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~S 268 (354)
|.+|+ -|+-+|.|+...+..+.+.+||+.+|+-|-+|
T Consensus 198 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 198 LRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred HHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 44554 44555777766667789999999999987654
No 76
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=78.73 E-value=28 Score=27.97 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhcCC--CCcEEEEEEcCCCC----------HHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHH
Q 018528 41 SQSLSAVEAAKSLSD--DNSVSMLLAGSGPS----------FNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVH 108 (354)
Q Consensus 41 ~~slell~~A~~La~--~~~V~avv~G~~~~----------~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa 108 (354)
+.+.+++..|..+++ +.++..+-+-+... .+.+.+.+. ..|.+..++ .+ ...++.|.
T Consensus 10 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~--------~~~~~~I~ 78 (124)
T cd01987 10 PNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAE--ELGAEVVTL-PG--------DDVAEAIV 78 (124)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHH--HcCCEEEEE-eC--------CcHHHHHH
Confidence 467888888888875 57888887754321 111222222 356653322 11 12467888
Q ss_pred HHHHhcCccEEEeCCCCCc---c----chHHHHHHHc-CCC
Q 018528 109 MIQQREKYSHIISASGSFG---K----NVLPRAAALL-DVS 141 (354)
Q Consensus 109 ~li~~~~P~lVL~g~T~~G---r----dlaprlAarL-~~~ 141 (354)
+.+++.++|+|++|+...+ + ..+-++..+. .++
T Consensus 79 ~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~ 119 (124)
T cd01987 79 EFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNID 119 (124)
T ss_pred HHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCe
Confidence 9999999999999997654 2 5555666555 443
No 77
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=78.36 E-value=4.3 Score=38.98 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred CceEEEecccchhh------hhhccCCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcc
Q 018528 292 PELYMAFGVSGAIQ------HLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFP 351 (354)
Q Consensus 292 P~lYia~GISGa~Q------H~~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~ 351 (354)
-++.|.+|-|..+. .++--++. .+|.||.+| .+.=+.+|+.|-||+.++||.|.+.|-
T Consensus 215 ~DlllvvGTSl~V~p~~~~~~~a~~~g~-~~i~IN~~~-t~~~~~~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 215 ADAVLVVGSSLMVYSGYRFCVWAAQQGK-PIAALNLGR-TRADPLLTLKVEASCAQALAALVARLG 278 (285)
T ss_pred CCEEEEECcCceecchhhhHHHHHHCCC-eEEEECCCC-CCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 44555566666553 12222344 788899985 566667799999999999999988763
No 78
>PRK13670 hypothetical protein; Provisional
Probab=76.82 E-value=27 Score=35.22 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=68.8
Q ss_pred EEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcC----C-C---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH
Q 018528 29 LVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGS----G-P---SFNEAVKHAASSHPSISQVLVADSDKFAYPIA 100 (354)
Q Consensus 29 lV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~----~-~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~ 100 (354)
=+++|..+ ++.-=..+|+.++++++.+-+.+|+-|. + + ...+-++-+. .+|+|-|+.+.-. +....+
T Consensus 5 GIIaEfdg--~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~--~~GvD~vielpf~-~a~~sa 79 (388)
T PRK13670 5 GIIVEYNP--FHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMAL--ENGVDLVVELPFL-YSVQSA 79 (388)
T ss_pred EEEeeeCC--cCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHH--HcCCCEEEEeCCc-hHhCCH
Confidence 46778643 4555677799999987533344444442 1 0 1222333333 5899999999877 888899
Q ss_pred HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHc
Q 018528 101 EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL 138 (354)
+.++.--.+++++.+.+.|+||...-.-+..-.++..+
T Consensus 80 e~F~~~aV~iL~~l~v~~lv~G~e~g~~~~L~~~~~~l 117 (388)
T PRK13670 80 DFFAEGAVSILDALGVDSLVFGSESGDIEDFQKIAKIL 117 (388)
T ss_pred HHHHHhHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 99987644555777899999999843335555555444
No 79
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=74.79 E-value=7 Score=40.86 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=70.9
Q ss_pred cEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCc--eecc-CC---------ceeCCceEEEecccch
Q 018528 236 RIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDL--QVGQ-TG---------KIVAPELYMAFGVSGA 303 (354)
Q Consensus 236 ~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~--qIGq-tG---------~~V~P~lYia~GISGa 303 (354)
+-++-.|.|+......+.+++||+++|+-|-.|=-. .|.+|.++ .+|. .| ..=..+|.|++|.+=.
T Consensus 203 rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~g--kg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~ 280 (535)
T TIGR03394 203 SPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMG--RGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILS 280 (535)
T ss_pred CCEEEEChhhcccCcHHHHHHHHHHhCCCEEEcccc--CcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCccc
Confidence 355667888876667889999999999988766443 57777654 4562 33 1224599999996611
Q ss_pred hhhhh--c--cCCCcEEEEEcCCCCCCccc--ccceEEeecHHHHHHHHHhhc
Q 018528 304 IQHLA--G--MRDSKVIVAVNKDADAPIFQ--VADYGLVGDLFEVIPELLEKF 350 (354)
Q Consensus 304 ~QH~~--G--~~~s~~IVAIN~D~~ApIf~--~aDygiVgD~~~vlp~l~~~l 350 (354)
-.... + ..+.+ +|=||.|+. .|-. ..|.++ +|..+.|.+|++++
T Consensus 281 ~~~~~~~~~~~~~~~-~I~id~~~~-~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 281 DTNFAVSQRKIDLRR-TIHAFDRAV-TLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred ccccccccccCCCCc-EEEEeCCEE-EECCeeECCccH-HHHHHHHHHhhhcc
Confidence 11111 1 12334 555787765 3322 468888 88999988887765
No 80
>PRK07586 hypothetical protein; Validated
Probab=74.31 E-value=12 Score=38.79 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCCc-EEEEeCccCCChhcHHHHHHHHHHhCCeecc
Q 018528 232 LGSAR-IVVTGGRGLKSAENFKMIEKLAEKLGAAVGA 267 (354)
Q Consensus 232 L~~A~-iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~ 267 (354)
|.+|+ -|+-.|.|+...+..+.+.+||+.+|+-|-.
T Consensus 194 L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t 230 (514)
T PRK07586 194 LRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLA 230 (514)
T ss_pred HHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEe
Confidence 33443 6777778887777788999999999998865
No 81
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=73.43 E-value=6.4 Score=37.67 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=43.7
Q ss_pred CceEEEecccchhhhhhccC-----CCcEEEEEcCCCCCCcc-cccceEEeecHHHHHHHHHhhccc
Q 018528 292 PELYMAFGVSGAIQHLAGMR-----DSKVIVAVNKDADAPIF-QVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G~~-----~s~~IVAIN~D~~ApIf-~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
.++.|.+|-|+.++-.+++- .-..||-||.+|. |.- ..+|+-|-+++-++++ +.+.|+.
T Consensus 200 aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t-~~~~~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 200 CDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKT-YITNRISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred CCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCC-CCCCccccEEEECcHHHHHH-HHHHhcc
Confidence 57899999999988554432 2234778999986 443 4689999999999996 4476664
No 82
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=73.37 E-value=44 Score=32.75 Aligned_cols=108 Identities=10% Similarity=0.079 Sum_probs=70.3
Q ss_pred EEecCCccChHHHHHHHHHHhcCC--CCcEEEEEE--cCCC-----------CHHHHHHHHhhcCCCccEEEEEe--CCC
Q 018528 32 GEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLA--GSGP-----------SFNEAVKHAASSHPSISQVLVAD--SDK 94 (354)
Q Consensus 32 ~E~~~g~l~~~slell~~A~~La~--~~~V~avv~--G~~~-----------~~~~~a~~l~~~~~GaD~V~~~~--~~~ 94 (354)
......-.++.-.|+|-..-.+.+ ..+|++|+. |... +.+-+++-+. .+|+|+|+.+| .++
T Consensus 57 ~qs~~~pvnd~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~--~aG~drv~TvDlH~~q 134 (314)
T COG0462 57 IQSTSPPVNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLE--TAGADRVLTVDLHAPQ 134 (314)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHH--HcCCCeEEEEcCCchh
Confidence 333344467777787665444433 368998874 5321 1233444444 57999999997 234
Q ss_pred CCCCCH-----HHHHHHHHHHHHhc-Cc-cEEEeCCCCCccchHHHHHHHcCCC
Q 018528 95 FAYPIA-----EPWAKLVHMIQQRE-KY-SHIISASGSFGKNVLPRAAALLDVS 141 (354)
Q Consensus 95 l~~~~~-----e~~a~aLa~li~~~-~P-~lVL~g~T~~GrdlaprlAarL~~~ 141 (354)
.++|-. .-....+++.+++. .. +.++++.+.-|..-+-.+|.+|+.+
T Consensus 135 iqgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~ 188 (314)
T COG0462 135 IQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAP 188 (314)
T ss_pred hcccCCCccccccchHHHHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCC
Confidence 443322 12346778877776 33 5788888889999999999999999
No 83
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=71.77 E-value=41 Score=32.66 Aligned_cols=101 Identities=9% Similarity=0.032 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHhcCC--CCcEEEEEE--cCC-----------CCHHHHHHHHhhcCCCccEEEEEe-C----CCCCCC-
Q 018528 40 KSQSLSAVEAAKSLSD--DNSVSMLLA--GSG-----------PSFNEAVKHAASSHPSISQVLVAD-S----DKFAYP- 98 (354)
Q Consensus 40 ~~~slell~~A~~La~--~~~V~avv~--G~~-----------~~~~~~a~~l~~~~~GaD~V~~~~-~----~~l~~~- 98 (354)
++.-.|++-....|.+ ..++++|+. |.. -+.+..++-+. .|+|+|+.+| | +++++|
T Consensus 62 n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~---~~~d~vit~DlH~~~~~~~~~~f 138 (301)
T PRK07199 62 DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLS---GSFDRLVTVDPHLHRYPSLSEVY 138 (301)
T ss_pred cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHH---hhcCeEEEEeccchhhHHhcCcc
Confidence 5555677655444433 246888753 321 12333444443 5999999997 2 233332
Q ss_pred ----CHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 99 ----IAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 99 ----~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+.......+++.+++..++.++++-..-|...+..+|.+|+.++.
T Consensus 139 ~ip~~nl~~~~~la~~l~~~~~~~vVVsPd~g~~~~a~~la~~l~~~~~ 187 (301)
T PRK07199 139 PIPAVVLSAAPAIAAWIRAHVPRPLLIGPDEESEQWVAAVAERAGAPHA 187 (301)
T ss_pred cCCccccchHHHHHHHHHhcCCCcEEEEeCCChHHHHHHHHHHhCCCEE
Confidence 122344667777765556778888888888999999999998874
No 84
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=71.34 E-value=49 Score=32.55 Aligned_cols=91 Identities=18% Similarity=0.076 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEEEcCC-C---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc
Q 018528 41 SQSLSAVEAAKSLSDDNSVSMLLAGSG-P---SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY 116 (354)
Q Consensus 41 ~~slell~~A~~La~~~~V~avv~G~~-~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P 116 (354)
+.+.+.++.|++++ -++.+-++-.. . ...+.++.+. .+|+|.+++.|. .....|+.+.+.+..+-+..+|
T Consensus 114 d~~~~~i~~ak~~G--~~v~~~l~~s~~~~~e~l~~~a~~~~--~~Ga~~i~i~DT--~G~~~P~~v~~~v~~l~~~l~~ 187 (333)
T TIGR03217 114 DVSEQHIGMARELG--MDTVGFLMMSHMTPPEKLAEQAKLME--SYGADCVYIVDS--AGAMLPDDVRDRVRALKAVLKP 187 (333)
T ss_pred HHHHHHHHHHHHcC--CeEEEEEEcccCCCHHHHHHHHHHHH--hcCCCEEEEccC--CCCCCHHHHHHHHHHHHHhCCC
Confidence 46788888899887 55555444221 1 1233445555 589999999887 4667899999998888777776
Q ss_pred c--EEEeCCCCCccchHHHHHHH
Q 018528 117 S--HIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 117 ~--lVL~g~T~~GrdlaprlAar 137 (354)
+ +=+=++...|-.++--+++.
T Consensus 188 ~i~ig~H~HnnlGla~ANslaAi 210 (333)
T TIGR03217 188 ETQVGFHAHHNLSLAVANSIAAI 210 (333)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 5 44446678888888887664
No 85
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=70.12 E-value=42 Score=32.89 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=67.9
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEE
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVA 90 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~ 90 (354)
-+++++--.. .-.++.-.|++-.+..|.+ ..++++|+. |.. + +.+-.++-+. .+|+|+|+.+
T Consensus 53 ~dV~iv~s~~-~~~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~--~~g~d~vit~ 129 (320)
T PRK02269 53 HHVFILQSTS-SPVNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLE--VAGVDRLLTV 129 (320)
T ss_pred CEEEEEecCC-CCccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHh--hcCCCEEEEE
Confidence 3455554422 1234555666544433322 246777753 321 1 1233455554 5899999999
Q ss_pred eC--CCCCCCCH-----HHHHHHHHHHHHhcC---ccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 91 DS--DKFAYPIA-----EPWAKLVHMIQQREK---YSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 91 ~~--~~l~~~~~-----e~~a~aLa~li~~~~---P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
|- ++.++|.. ......+++.+++.. .+.++++-..-|-..+..+|..|+.|+.
T Consensus 130 D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~ 192 (320)
T PRK02269 130 DLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIA 192 (320)
T ss_pred CCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEE
Confidence 73 22222222 334456667676543 4678888888889999999999998864
No 86
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=69.89 E-value=15 Score=30.29 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=35.0
Q ss_pred CCCccEEEEEeCCCCCCCC--HHHHHHHHHHHHHhcCccEEEeCCCCCc
Q 018528 81 HPSISQVLVADSDKFAYPI--AEPWAKLVHMIQQREKYSHIISASGSFG 127 (354)
Q Consensus 81 ~~GaD~V~~~~~~~l~~~~--~e~~a~aLa~li~~~~P~lVL~g~T~~G 127 (354)
..|+++++.++-|...... .+...+.|.+++++.+|++|+.+....+
T Consensus 64 ~lGv~~~~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 64 ILGVENVIFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HCT-EEEEEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HcCCceEEEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4799889888876554444 7888899999999999999999875543
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.57 E-value=71 Score=28.05 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=50.6
Q ss_pred EEEEEEcCCC-CHHHHHHHHhhcCC-CccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC-CCCccchHHHHH
Q 018528 59 VSMLLAGSGP-SFNEAVKHAASSHP-SISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS-GSFGKNVLPRAA 135 (354)
Q Consensus 59 V~avv~G~~~-~~~~~a~~l~~~~~-GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~-T~~GrdlaprlA 135 (354)
....++|..+ ..+.+++.+. +.| |.+ +.-..++-+ .+...+.+.+.+++.+||+|+++- ++....+.-+..
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~-~~yP~l~-ivg~~~g~f----~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~ 122 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLR-RRYPGLR-IVGYHHGYF----DEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHR 122 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHH-HHCCCeE-EEEecCCCC----ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 4666788652 2344455555 234 444 444444433 344556666677788999999997 455568888999
Q ss_pred HHcCCCce
Q 018528 136 ALLDVSPI 143 (354)
Q Consensus 136 arL~~~lv 143 (354)
.+|+.++.
T Consensus 123 ~~l~~~v~ 130 (172)
T PF03808_consen 123 QRLPAGVI 130 (172)
T ss_pred HHCCCCEE
Confidence 99999833
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=65.57 E-value=97 Score=30.03 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=58.6
Q ss_pred ceeEEEEEecCCccChHHHHHHHH-HHhcCC--CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEE--EEeCCCCCCCCH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEA-AKSLSD--DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVL--VADSDKFAYPIA 100 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~-A~~La~--~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~--~~~~~~l~~~~~ 100 (354)
|+|+++.-++..-. .+.- -++|.+ +-++.+++-|.. . ...+++. +.+|.+.-+ .+.++ .....
T Consensus 1 ~~i~~~~gtr~~~~------~~~p~~~~l~~~~~~~~~~~~tg~h--~-~~~~~~~-~~~~i~~~~~~~~~~~--~~~~~ 68 (365)
T TIGR00236 1 LKVSIVLGTRPEAI------KMAPLIRALKKYPEIDSYVIVTAQH--R-EMLDQVL-DLFHLPPDYDLNIMSP--GQTLG 68 (365)
T ss_pred CeEEEEEecCHHHH------HHHHHHHHHhhCCCCCEEEEEeCCC--H-HHHHHHH-HhcCCCCCeeeecCCC--CCCHH
Confidence 67888887764221 1111 223332 236788888877 4 3344443 235654222 22221 22234
Q ss_pred HHHHH---HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 101 EPWAK---LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 101 e~~a~---aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+..+. -+++++++.+||+|++-.+..---.+..+|.++++|++
T Consensus 69 ~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~ 114 (365)
T TIGR00236 69 EITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVG 114 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEE
Confidence 44444 46667788999999987644322335666777899975
No 89
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=65.38 E-value=3.9 Score=38.71 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=45.9
Q ss_pred CceEEEecccchhhhhhc------cCCCcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcccC
Q 018528 292 PELYMAFGVSGAIQHLAG------MRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEK 353 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G------~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~~ 353 (354)
.++.|.+|-||.++=.++ -++++ +|-||. +.-++-..+|+-+.+|+.+++|.|.+.+...
T Consensus 183 ~d~liviGTSl~V~Paa~~p~~~~~~g~~-~i~iN~-~~~~~~~~~d~~i~~~a~~~~~~l~~~~~~~ 248 (250)
T COG0846 183 ADLLIVIGTSLKVYPAAGLPELAKRRGAK-VIEINL-EPTRLDPIADEVIRGDAGEVLPLLLEELLKG 248 (250)
T ss_pred CCEEEEECcceEEcChhhhhHHHHhcCCE-EEEECC-CcccCcchhHHHHHhhHHHHHHHHHHHhhhh
Confidence 567777777777664433 33444 667999 6678888999999999999999999988753
No 90
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=63.66 E-value=79 Score=27.75 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCC-CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGP-SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHII 120 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~-~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL 120 (354)
...++++.+.+- ...+.++|..+ ..+.+++.+.....|.+ +....++-+. .+...+ +.+.+++.+||+|+
T Consensus 34 l~~~ll~~~~~~----~~~v~llG~~~~~~~~~~~~l~~~yp~l~-i~g~~~g~~~---~~~~~~-i~~~I~~~~pdiv~ 104 (171)
T cd06533 34 LMPALLELAAQK----GLRVFLLGAKPEVLEKAAERLRARYPGLK-IVGYHHGYFG---PEEEEE-IIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHc----CCeEEEECCCHHHHHHHHHHHHHHCCCcE-EEEecCCCCC---hhhHHH-HHHHHHHcCCCEEE
Confidence 344555555442 24566788762 12333434542234665 3333343232 222222 77778888999999
Q ss_pred eCC-CCCccchHHHHHHHcCCCcee
Q 018528 121 SAS-GSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 121 ~g~-T~~GrdlaprlAarL~~~lvt 144 (354)
++- ++....++-+...+++.+++-
T Consensus 105 vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 105 VGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEE
Confidence 997 556668888999999777653
No 91
>PRK10116 universal stress protein UspC; Provisional
Probab=63.20 E-value=83 Score=25.76 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=56.8
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCC------------CH--------HHHHHHHhhcCC
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGP------------SF--------NEAVKHAASSHP 82 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~------------~~--------~~~a~~l~~~~~ 82 (354)
+.+|+|..+..+ .+..+++.|.+|++ +.+++++.+=+.. .. ++..+++. ...
T Consensus 3 ~~~ILv~~D~s~-----~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 76 (142)
T PRK10116 3 YSNILVAVAVTP-----ESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLI-QDA 76 (142)
T ss_pred CceEEEEccCCc-----chHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 356888887654 35677888888875 5677776441110 00 01112222 134
Q ss_pred Ccc--EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCc---c--chHHHHHHHcCCCce
Q 018528 83 SIS--QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFG---K--NVLPRAAALLDVSPI 143 (354)
Q Consensus 83 GaD--~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~G---r--dlaprlAarL~~~lv 143 (354)
|.. .+.+... ++ .+.|.+.+++.++|+|++|....+ + ..+.++..+.++|++
T Consensus 77 ~~~~~~~~~~~G------~~---~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVL 135 (142)
T PRK10116 77 DYPIEKTFIAYG------EL---SEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVL 135 (142)
T ss_pred CCCeEEEEEecC------CH---HHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEE
Confidence 643 2232211 22 256778889999999999875432 1 234455555555543
No 92
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=62.09 E-value=25 Score=32.89 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=53.7
Q ss_pred cEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcE
Q 018528 236 RIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKV 315 (354)
Q Consensus 236 ~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~ 315 (354)
.-|+...-|||.+.---.+++|.+ +| |+..|-+|.+|++|-- ++--++
T Consensus 53 ~~v~v~~~GiG~~~aai~~~eLi~-~g-----------------------------~~~iIr~GtaG~l~~~--~~~GDi 100 (245)
T TIGR01718 53 KPVIVCSTGIGGPSTAIAVEELAQ-LG-----------------------------ARTFIRVGTTGAIQPH--INVGDV 100 (245)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHH-hC-----------------------------CCEEEEeeccccCCCC--CCCCCE
Confidence 334444556666543346777775 54 7899999999999865 555566
Q ss_pred EE---EEcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 316 IV---AVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 316 IV---AIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|| |++.|-...-+.-..|-.+.| +++...|.+.+++
T Consensus 101 VI~~~a~~~Dg~~~~y~~~~~p~~~d-~~l~~~l~~~~~~ 139 (245)
T TIGR01718 101 LITTAAVRLDGASLHYAPLEFPAVAD-FEVTTALVEAAES 139 (245)
T ss_pred EEeCceecCCCcccccCCCCcCCCCC-HHHHHHHHHHHHH
Confidence 66 467786655555444455556 6666666666543
No 93
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=61.67 E-value=1e+02 Score=30.44 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhcCCCCcEEEEEEcCC-CCHH---HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc
Q 018528 41 SQSLSAVEAAKSLSDDNSVSMLLAGSG-PSFN---EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY 116 (354)
Q Consensus 41 ~~slell~~A~~La~~~~V~avv~G~~-~~~~---~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P 116 (354)
+...+.++.|++++ -++.+.+.-.. ...+ +.++.+. .+|+|.+++.|. .....|+...+.+..+-++.+|
T Consensus 115 ~~~~~~i~~ak~~G--~~v~~~l~~a~~~~~e~l~~~a~~~~--~~Ga~~i~i~DT--~G~~~P~~v~~~v~~l~~~l~~ 188 (337)
T PRK08195 115 DVSEQHIGLARELG--MDTVGFLMMSHMAPPEKLAEQAKLME--SYGAQCVYVVDS--AGALLPEDVRDRVRALRAALKP 188 (337)
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEeccCCCHHHHHHHHHHHH--hCCCCEEEeCCC--CCCCCHHHHHHHHHHHHHhcCC
Confidence 46788888899887 55555443221 1123 3445555 589999999887 5678899999999988887766
Q ss_pred cEEEe--CCCCCccchHHHHHHHc
Q 018528 117 SHIIS--ASGSFGKNVLPRAAALL 138 (354)
Q Consensus 117 ~lVL~--g~T~~GrdlaprlAarL 138 (354)
++-+- ++...|-.+|--+++.-
T Consensus 189 ~i~ig~H~HnnlGla~ANslaAi~ 212 (337)
T PRK08195 189 DTQVGFHGHNNLGLGVANSLAAVE 212 (337)
T ss_pred CCeEEEEeCCCcchHHHHHHHHHH
Confidence 64443 56777888888776653
No 94
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=61.46 E-value=55 Score=32.27 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=66.1
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEE
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVA 90 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~ 90 (354)
-+++++.-.. .-.++.-+|++-.+..+.+ ..++++|+. |.. + ...-.++-+. .+|+|+|+.+
T Consensus 57 ~dV~ivqs~~-~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~--~~g~d~vit~ 133 (332)
T PRK00553 57 KDVVIFQSTC-SPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLT--KAGVTRVTLT 133 (332)
T ss_pred CEEEEEcCCC-CCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHH--hcCCCEEEEE
Confidence 3455554432 2235566776554433332 246777753 321 1 1233454444 5799999999
Q ss_pred eC--CCCCCCCHH-----HHHHHHHHHHHhc--CccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 91 DS--DKFAYPIAE-----PWAKLVHMIQQRE--KYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 91 ~~--~~l~~~~~e-----~~a~aLa~li~~~--~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
|- ++.++|-.- .-...+++.+.+. ..+.++.+....|...+..+|.+|+.|+.
T Consensus 134 DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA~~lg~~~~ 195 (332)
T PRK00553 134 DIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLELPLA 195 (332)
T ss_pred eCChHHHHhhcCCCcceeechHHHHHHHHHhcCCCCeEEEEECCCcHHHHHHHHHHhCCCEE
Confidence 72 222222111 1123445555331 24678888899999999999999998864
No 95
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=61.24 E-value=76 Score=24.64 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=61.3
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCCC-------------HHHHHHHHhhc--CCCccEEEEE
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGPS-------------FNEAVKHAASS--HPSISQVLVA 90 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~~-------------~~~~a~~l~~~--~~GaD~V~~~ 90 (354)
|+|..+. .+.+..++..|..++. +.+++++.+-+... .++..+.+... ..|+.-.+.+
T Consensus 2 ilv~i~~-----~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 76 (130)
T cd00293 2 ILVAVDG-----SEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVV 76 (130)
T ss_pred EEEEeCC-----CHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 5555553 5578888888888876 67899887754310 11111222100 2465533333
Q ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCc-------cchHHHHHHHcCCCce
Q 018528 91 DSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFG-------KNVLPRAAALLDVSPI 143 (354)
Q Consensus 91 ~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~G-------rdlaprlAarL~~~lv 143 (354)
.. .++ .+.|.+.+++.++|++++|....+ ...+-.+..++++|++
T Consensus 77 ~~-----~~~---~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvl 128 (130)
T cd00293 77 LE-----GDP---AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVL 128 (130)
T ss_pred ec-----CCC---HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEE
Confidence 21 111 578889999999999999986543 2555666666666654
No 96
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=61.12 E-value=98 Score=29.80 Aligned_cols=100 Identities=7% Similarity=0.006 Sum_probs=58.8
Q ss_pred ccccceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH
Q 018528 22 ISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA 100 (354)
Q Consensus 22 ~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~ 100 (354)
.++.|+|.|++=.. ...+++|-.+.+-++ +.++.+|+-... .+..+++ .+|+.-. +++... .+-
T Consensus 86 ~~~~~ri~vl~Sg~-----g~nl~al~~~~~~~~~~~~i~~visn~~-~~~~lA~-----~~gIp~~-~~~~~~---~~~ 150 (286)
T PRK13011 86 PAARPKVLIMVSKF-----DHCLNDLLYRWRIGELPMDIVGVVSNHP-DLEPLAA-----WHGIPFH-HFPITP---DTK 150 (286)
T ss_pred cccCceEEEEEcCC-----cccHHHHHHHHHcCCCCcEEEEEEECCc-cHHHHHH-----HhCCCEE-EeCCCc---Cch
Confidence 45678998888653 356777777766554 467776655432 1444432 3687744 443211 233
Q ss_pred HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHc
Q 018528 101 EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL 138 (354)
+.+...+.+.+++.+||++++. .+++-+.+.+=.+.
T Consensus 151 ~~~~~~~~~~l~~~~~Dlivla--gy~~il~~~~l~~~ 186 (286)
T PRK13011 151 PQQEAQVLDVVEESGAELVVLA--RYMQVLSPELCRKL 186 (286)
T ss_pred hhhHHHHHHHHHHhCcCEEEEe--ChhhhCCHHHHhhc
Confidence 4455667888889999999875 34444444443333
No 97
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.21 E-value=1.7e+02 Score=29.08 Aligned_cols=64 Identities=6% Similarity=0.036 Sum_probs=47.7
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc-cEEEeCCCCCccchHHHHHHHc
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY-SHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P-~lVL~g~T~~GrdlaprlAarL 138 (354)
.++++++. ..|+|++.+.|.- ....|....+.+..+.+.... .+=+=.+...|.-++--+|+..
T Consensus 200 ~~~~~~~~--~~Gad~I~l~DT~--G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~ 264 (347)
T PLN02746 200 AYVAKELY--DMGCYEISLGDTI--GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQ 264 (347)
T ss_pred HHHHHHHH--HcCCCEEEecCCc--CCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHH
Confidence 35667776 5899999998874 556788998888888766542 3455577889999999887743
No 98
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=58.57 E-value=99 Score=29.07 Aligned_cols=91 Identities=9% Similarity=0.035 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEcCCC-CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe
Q 018528 43 SLSAVEAAKSLSDDNSVSMLLAGSGP-SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 43 slell~~A~~La~~~~V~avv~G~~~-~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~ 121 (354)
..++++.+.+- .....++|..+ .++.+++.+. ..||.+-+ -..++ .++++.. +.+.+.|.+.+||+|++
T Consensus 94 ~~~ll~~~~~~----~~~v~llG~~~~v~~~a~~~l~-~~y~l~i~-g~~~G---yf~~~e~-~~i~~~I~~s~~dil~V 163 (243)
T PRK03692 94 WEALMARAGKE----GTPVFLVGGKPEVLAQTEAKLR-TQWNVNIV-GSQDG---YFTPEQR-QALFERIHASGAKIVTV 163 (243)
T ss_pred HHHHHHHHHhc----CCeEEEECCCHHHHHHHHHHHH-HHhCCEEE-EEeCC---CCCHHHH-HHHHHHHHhcCCCEEEE
Confidence 34555555433 25567788763 2344666665 34676633 33332 2345444 44666777889999999
Q ss_pred CC-CCCccchHHHHHHHcCCCce
Q 018528 122 AS-GSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 122 g~-T~~GrdlaprlAarL~~~lv 143 (354)
|- ++.-..+.-+...+++.+++
T Consensus 164 glG~PkQE~~~~~~~~~~~~~v~ 186 (243)
T PRK03692 164 AMGSPKQEIFMRDCRLVYPDALY 186 (243)
T ss_pred ECCCcHHHHHHHHHHHhCCCCEE
Confidence 97 45666777888888887764
No 99
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=57.97 E-value=90 Score=30.03 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHhcCCCc-cccccccccceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCcc
Q 018528 8 WALSKRPRC-FHRPSISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSIS 85 (354)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD 85 (354)
.+|.+.+.. .+....++.|+|.|++=..+ ..+++|-.+.+-++ +.+|.+|+-..+ .+..+++ .+|..
T Consensus 71 ~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~g-----snl~al~~~~~~~~~~~~i~~visn~~-~~~~lA~-----~~gIp 139 (286)
T PRK06027 71 AALAEEFEMDWRLLDSAERKRVVILVSKED-----HCLGDLLWRWRSGELPVEIAAVISNHD-DLRSLVE-----RFGIP 139 (286)
T ss_pred HHHHHHhCCEEEEcccccCcEEEEEEcCCC-----CCHHHHHHHHHcCCCCcEEEEEEEcCh-hHHHHHH-----HhCCC
Confidence 444444431 22344678889998886543 56777666655443 467777665433 1333322 46887
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC
Q 018528 86 QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 86 ~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
- ++++... ++.+.+...+.+.+++.+||+|++.+
T Consensus 140 ~-~~~~~~~---~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 140 F-HHVPVTK---ETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred E-EEeccCc---cccchhHHHHHHHHHHhCCCEEEEec
Confidence 4 4443321 23345556778888899999888643
No 100
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=57.28 E-value=1.2e+02 Score=29.36 Aligned_cols=102 Identities=11% Similarity=0.102 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCC---
Q 018528 40 KSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPI--- 99 (354)
Q Consensus 40 ~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~--- 99 (354)
++.-+|++-.+..+.+ ..++++|+. +.. + +.+..++-+. .+|+|+++.+|- ++++++-
T Consensus 62 ~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~--~~g~d~vit~DlHs~~~~~~f~ip 139 (308)
T TIGR01251 62 NDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLE--TAGADRVLTVDLHSPQIQGFFDVP 139 (308)
T ss_pred cHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHH--HcCCCEEEEecCChHHhcCcCCCc
Confidence 5555566554333322 246777753 321 1 2334555554 589999999972 1222221
Q ss_pred --HHHHHHHHHHHHHhc-CccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 100 --AEPWAKLVHMIQQRE-KYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 100 --~e~~a~aLa~li~~~-~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
.......+++.+.+. ..+.++++-...|-.++..+|..||.|+.
T Consensus 140 ~~~l~a~~~l~~~i~~~~~~~~viv~pd~g~~~~A~~lA~~Lg~~~~ 186 (308)
T TIGR01251 140 VDNLYASPVLAEYLKKKILDNPVVVSPDAGGVERAKKVADALGCPLA 186 (308)
T ss_pred eecccCHHHHHHHHHhhCCCCCEEEEECCchHHHHHHHHHHhCCCEE
Confidence 122234566666543 34677888888888999999999997763
No 101
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=56.84 E-value=69 Score=31.44 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH--
Q 018528 40 KSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA-- 100 (354)
Q Consensus 40 ~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~-- 100 (354)
++.-+|++-.+..+.+ ..++++|+. |.. + +...+++-+. .+|+|+|+.+|- ++.++|..
T Consensus 70 nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~--~~g~d~vitvD~H~~~i~~~F~~p 147 (323)
T PRK02458 70 NDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLV--KAGVDRVLTLDLHAVQVQGFFDIP 147 (323)
T ss_pred chHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHh--hcCCCeEEEEecCcHHhhccccCC
Confidence 4455666554333322 246777753 321 1 2344555554 579999999973 33334321
Q ss_pred ---HHHHHHHHHHHHhcC---ccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 101 ---EPWAKLVHMIQQREK---YSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 101 ---e~~a~aLa~li~~~~---P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
-.-...+++.+++.. .+.++++-..-|-..|..+|.+|+.|+.
T Consensus 148 ~~nl~~~p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~~~~ 196 (323)
T PRK02458 148 VDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIA 196 (323)
T ss_pred ceEEEEHHHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCCCEE
Confidence 111245566665532 5688888888899999999999998764
No 102
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=55.99 E-value=1.5e+02 Score=26.40 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCC-CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGP-SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHII 120 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~-~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL 120 (354)
...++++.+.+- ...+.++|..+ .++.+++.+.....|.+-+. . +. .+.++ ..+.+.+.|.+.+||+|+
T Consensus 36 l~~~l~~~~~~~----~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g-~-~g---~f~~~-~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 36 LMEELCQRAGKE----KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVG-A-FG---PLEPE-ERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHc----CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEE-E-CC---CCChH-HHHHHHHHHHHcCCCEEE
Confidence 445556555432 25677888763 23445555542223555343 3 32 23333 335577778888999999
Q ss_pred eCCC-CCccchHHHHHHHcCCCce
Q 018528 121 SASG-SFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 121 ~g~T-~~GrdlaprlAarL~~~lv 143 (354)
++-. +.-..+.-+....++.+++
T Consensus 106 VglG~PkQE~~~~~~~~~~~~~v~ 129 (177)
T TIGR00696 106 VGLGCPKQEIWMRNHRHLKPDAVM 129 (177)
T ss_pred EEcCCcHhHHHHHHhHHhCCCcEE
Confidence 9974 4555667777777776654
No 103
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.28 E-value=77 Score=30.76 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=59.6
Q ss_pred cChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH-
Q 018528 39 IKSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA- 100 (354)
Q Consensus 39 l~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~- 100 (354)
.++.-+|++-.+..+.+ ..++++|+. |.. + +.+..++-+. .+|+|+|+.+|- +++++|..
T Consensus 49 ~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~--~~g~d~vitvD~H~~~~~~~f~~ 126 (304)
T PRK03092 49 INKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFK--TAGADRIMTVDLHTAQIQGFFDG 126 (304)
T ss_pred CcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHH--hcCCCeEEEEecChHHHHhhcCC
Confidence 35566666554433332 246887753 421 1 2334455554 579999999973 22222221
Q ss_pred ----HHHHHHHHHHHHhc--CccEEEeCCCCCccchHHHHHHHcC-CC
Q 018528 101 ----EPWAKLVHMIQQRE--KYSHIISASGSFGKNVLPRAAALLD-VS 141 (354)
Q Consensus 101 ----e~~a~aLa~li~~~--~P~lVL~g~T~~GrdlaprlAarL~-~~ 141 (354)
..-.+.+++.+++. ..+.++++-..-+...+..+|.+|+ .+
T Consensus 127 p~~~l~~~~~la~~i~~~~~~~~~vvVspd~Ga~~~a~~la~~L~~~~ 174 (304)
T PRK03092 127 PVDHLFAMPLLADYVRDKYDLDNVTVVSPDAGRVRVAEQWADRLGGAP 174 (304)
T ss_pred CeeeEechHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHcCCCC
Confidence 12234555666442 3567888888888899999999998 54
No 104
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=55.07 E-value=1.3e+02 Score=28.92 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=57.6
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH---
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA--- 100 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~--- 100 (354)
+|+|+++.-..+|... ..++ .|+.|.+ +.+|.++..+.. .. .... ...|++ ++.+..+.+.....
T Consensus 1 ~~~i~i~~~g~gG~~~-~~~~---la~~L~~~g~ev~vv~~~~~--~~---~~~~-~~~g~~-~~~~~~~~~~~~~~~~~ 69 (357)
T PRK00726 1 MKKILLAGGGTGGHVF-PALA---LAEELKKRGWEVLYLGTARG--ME---ARLV-PKAGIE-FHFIPSGGLRRKGSLAN 69 (357)
T ss_pred CcEEEEEcCcchHhhh-HHHH---HHHHHHhCCCEEEEEECCCc--hh---hhcc-ccCCCc-EEEEeccCcCCCChHHH
Confidence 4888888755566554 3344 4444443 366665443221 11 1222 124775 55555443322221
Q ss_pred -------HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHH-HHHcCCCceee
Q 018528 101 -------EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRA-AALLDVSPITD 145 (354)
Q Consensus 101 -------e~~a~aLa~li~~~~P~lVL~g~T~~Grdlaprl-AarL~~~lvtd 145 (354)
-.....+.+++++.+||+|+.-.... .+.+.+ +-..+.|++..
T Consensus 70 l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 70 LKAPFKLLKGVLQARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEE
Confidence 22234556778888999999876433 344444 44466777743
No 105
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=53.49 E-value=1.5e+02 Score=28.42 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=52.8
Q ss_pred ccccceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH
Q 018528 22 ISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA 100 (354)
Q Consensus 22 ~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~ 100 (354)
.++.++|.|++=..+ ..++.|-.+.+-++ +.+|.+|+--.. .+...++ .+|..- ++++... .+-
T Consensus 81 ~~~~~ki~vl~Sg~g-----~nl~~l~~~~~~g~l~~~i~~visn~~-~~~~~A~-----~~gIp~-~~~~~~~---~~~ 145 (280)
T TIGR00655 81 ADKLKRVAILVSKED-----HCLGDLLWRWYSGELDAEIALVISNHE-DLRSLVE-----RFGIPF-HYIPATK---DNR 145 (280)
T ss_pred CCCCcEEEEEEcCCC-----hhHHHHHHHHHcCCCCcEEEEEEEcCh-hHHHHHH-----HhCCCE-EEcCCCC---cch
Confidence 356788999886553 46666666655443 367766554332 1333322 468874 4444321 244
Q ss_pred HHHHHHHHHHHHhcCccEEEeCC
Q 018528 101 EPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
+.+...+.+.+++.+||+|++..
T Consensus 146 ~~~e~~~~~~l~~~~~Dlivlag 168 (280)
T TIGR00655 146 VEHEKRQLELLKQYQVDLVVLAK 168 (280)
T ss_pred hhhHHHHHHHHHHhCCCEEEEeC
Confidence 55667788888999999988653
No 106
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=53.19 E-value=1.8e+02 Score=27.60 Aligned_cols=105 Identities=16% Similarity=0.057 Sum_probs=52.5
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH----
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA---- 100 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~---- 100 (354)
|+||+++--.+|.+. ...+ .|++|.+ +.+|+++. ++. .. ...+. ..+|.+ ++.+....+.....
T Consensus 1 ~~i~~~~g~~~g~~~-~~~~---La~~L~~~g~eV~vv~-~~~---~~-~~~~~-~~~g~~-~~~i~~~~~~~~~~~~~l 69 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF-PALA---VAEELIKRGVEVLWLG-TKR---GL-EKRLV-PKAGIE-FYFIPVGGLRRKGSFRLI 69 (348)
T ss_pred CeEEEEeCccHHHHh-HHHH---HHHHHHhCCCEEEEEe-CCC---cc-hhccc-ccCCCc-eEEEeccCcCCCChHHHH
Confidence 578877744445544 3333 4555544 36777653 322 11 11221 125664 44444322221111
Q ss_pred ------HHHHHHHHHHHHhcCccEEEeCCCCCccchHHH-HHHHcCCCce
Q 018528 101 ------EPWAKLVHMIQQREKYSHIISASGSFGKNVLPR-AAALLDVSPI 143 (354)
Q Consensus 101 ------e~~a~aLa~li~~~~P~lVL~g~T~~Grdlapr-lAarL~~~lv 143 (354)
-.....+.+++++.+||+|+.-... . .+... ++..++.|++
T Consensus 70 ~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~-~-~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 70 KTPLKLLKAVFQARRILKKFKPDAVIGFGGY-V-SGPAGLAAKLLGIPLF 117 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEcCCc-c-cHHHHHHHHHcCCCEE
Confidence 1223356778899999999985322 1 23334 4555677775
No 107
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=53.02 E-value=36 Score=33.84 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCccEEEeCCCC-Ccc------chHHHHHHHcCCCceeeeE
Q 018528 95 FAYPIAEPWAKLVHMIQQREKYSHIISASGS-FGK------NVLPRAAALLDVSPITDVI 147 (354)
Q Consensus 95 l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~-~Gr------dlaprlAarL~~~lvtdv~ 147 (354)
|=.-+.|...+-+.+++++.+||++++|..- .|| .++-.+..+|++|.+|-..
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 4445677778888999999999999998754 344 5666677799999997664
No 108
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.78 E-value=15 Score=33.99 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcccCC
Q 018528 314 KVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEKK 354 (354)
Q Consensus 314 ~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~~~ 354 (354)
|++|+|.-||=.---+.|++-||..+---+|.|++..+++|
T Consensus 175 K~ViaIDLNPLSRTar~AsItIVDnivRA~p~li~~~~em~ 215 (256)
T COG1701 175 KTVIAIDLNPLSRTARKASITIVDNIVRAVPNLIEFVKEMK 215 (256)
T ss_pred CeEEEEeCCccccccccCceeeeHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999888653
No 109
>PRK10481 hypothetical protein; Provisional
Probab=51.68 E-value=1.4e+02 Score=27.91 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=56.5
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHH
Q 018528 57 NSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAA 136 (354)
Q Consensus 57 ~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAa 136 (354)
.++.+++.-++. .+...++.. .+|.+-.+...+| +. ...+...++.. -++..++|+|++.-+-+..+..+.+..
T Consensus 130 ~riGVitP~~~q-i~~~~~kw~--~~G~~v~~~~asp-y~-~~~~~l~~aa~-~L~~~gaD~Ivl~C~G~~~~~~~~le~ 203 (224)
T PRK10481 130 HQVGVIVPVEEQ-LAQQAQKWQ--VLQKPPVFALASP-YH-GSEEELIDAGK-ELLDQGADVIVLDCLGYHQRHRDLLQK 203 (224)
T ss_pred CeEEEEEeCHHH-HHHHHHHHH--hcCCceeEeecCC-CC-CCHHHHHHHHH-HhhcCCCCEEEEeCCCcCHHHHHHHHH
Confidence 677777765542 344455554 4688877777665 22 22333333333 334578999999998888799999999
Q ss_pred HcCCCceeee
Q 018528 137 LLDVSPITDV 146 (354)
Q Consensus 137 rL~~~lvtdv 146 (354)
.+|.|++.-.
T Consensus 204 ~lg~PVI~~n 213 (224)
T PRK10481 204 ALDVPVLLSN 213 (224)
T ss_pred HHCcCEEcHH
Confidence 9999988643
No 110
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=51.68 E-value=1.6e+02 Score=31.89 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCcc--EEEEEeCCCCCC------CCHHHHHHHHHHHHHhcCccEEEeCC
Q 018528 81 HPSIS--QVLVADSDKFAY------PIAEPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 81 ~~GaD--~V~~~~~~~l~~------~~~e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
..|++ +++.++-|.++. ...+...+.+.+++++.+|+.|+...
T Consensus 480 ~lGv~~~~v~fL~lP~y~~g~~~~~p~~~~~v~~i~~li~~~kP~~V~~~~ 530 (652)
T PRK02122 480 YVGLPDEHVHFLDLPFYETGTVRKNPIGEADVEIVMDLLEEIKPHQIFVAG 530 (652)
T ss_pred hcCCCccceEECCCCCccCCccccCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 46887 788888764333 23356678899999999999999873
No 111
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=51.19 E-value=18 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcccC
Q 018528 313 SKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEK 353 (354)
Q Consensus 313 s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~~ 353 (354)
-|++|+|.-||=.-=-+.|++-||..+---+|.|++..+++
T Consensus 110 GK~VIaIDLNPLSRTar~AtitIVDni~RA~p~~~~~~~~l 150 (178)
T PF02006_consen 110 GKTVIAIDLNPLSRTARTATITIVDNITRAIPNMIEFAREL 150 (178)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHHHHH
Confidence 36789999999998899999999999999999999887765
No 112
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=50.82 E-value=1.9e+02 Score=27.74 Aligned_cols=63 Identities=6% Similarity=0.004 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-ccEEEeCCCCCccchHHHHHHH
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK-YSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~-P~lVL~g~T~~GrdlaprlAar 137 (354)
.+.++++. .+|+|.+++.|.- ....|..+.+.+..+.++.. ..+-+=.+...|.-++--+|+.
T Consensus 158 ~~~~~~~~--~~G~d~i~l~DT~--G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 158 ADVAERLF--ALGCYEISLGDTI--GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred HHHHHHHH--HcCCcEEEecccc--CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHH
Confidence 44566766 5899999998874 55688999988888877654 2455557788999999988774
No 113
>PLN02846 digalactosyldiacylglycerol synthase
Probab=49.94 E-value=66 Score=33.23 Aligned_cols=115 Identities=6% Similarity=-0.031 Sum_probs=68.9
Q ss_pred ccceeEEEEEecCCccChHHHHHHHHHHhcCC-C-CcEEEEEEcCCCCH--------------HHHHHHHhhcCCCccEE
Q 018528 24 RSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-D-NSVSMLLAGSGPSF--------------NEAVKHAASSHPSISQV 87 (354)
Q Consensus 24 ~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~-~~V~avv~G~~~~~--------------~~~a~~l~~~~~GaD~V 87 (354)
..|+|+++.|..-=.++-++...+..+..|.+ | .+|++|........ ++--..+. ... -++|
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~-~~~-~~~v 80 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVR-QWL-EERI 80 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhh-hhc-cCeE
Confidence 45999999998766666676777777778876 5 48888876432000 00000011 011 1355
Q ss_pred EEEeCCCCCCCCHHHH---------HHHHHHHHHhcCccEEEeCC-CCCccch--HHHHHHHcCCCce
Q 018528 88 LVADSDKFAYPIAEPW---------AKLVHMIQQREKYSHIISAS-GSFGKNV--LPRAAALLDVSPI 143 (354)
Q Consensus 88 ~~~~~~~l~~~~~e~~---------a~aLa~li~~~~P~lVL~g~-T~~Grdl--aprlAarL~~~lv 143 (354)
+.+.+..+..|.. .+ ..-+.+.+++.+||+|-+.. -..|. + +.+.+.+++. ++
T Consensus 81 ~r~~s~~~p~yp~-r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~-~~~g~~~~~k~~~-vV 145 (462)
T PLN02846 81 SFLPKFSIKFYPG-KFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTW-YHHGKRWKTKFRL-VI 145 (462)
T ss_pred EEecccccccCcc-cccccccccCChHHHHHHHHhcCCCEEEEcCchhhhh-HHHHHHHHhcCCc-EE
Confidence 5555444433322 21 34588888999999997765 33454 4 7888888866 55
No 114
>PRK13761 hypothetical protein; Provisional
Probab=48.78 E-value=19 Score=33.62 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCCCCcccccceEEeecHHHHHHHHHhhcccC
Q 018528 313 SKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKFPEK 353 (354)
Q Consensus 313 s~~IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~~ 353 (354)
-|++|+|.-||=.---+.|++-||..+---+|.|++..++.
T Consensus 171 GK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~~~el 211 (248)
T PRK13761 171 GKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEYAREL 211 (248)
T ss_pred CCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999887765
No 115
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=48.44 E-value=1.6e+02 Score=28.36 Aligned_cols=86 Identities=6% Similarity=0.025 Sum_probs=50.7
Q ss_pred cccceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH
Q 018528 23 SRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAE 101 (354)
Q Consensus 23 ~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e 101 (354)
++.|+|.|++=..+ ..++.|=.+.+-++ +.++.+|+-. . .++. +.+ ..+|.. +++++... .+.+
T Consensus 91 ~~~~kiavl~Sg~g-----~nl~al~~~~~~~~l~~~i~~visn-~---~~~~-~~A-~~~gIp-~~~~~~~~---~~~~ 155 (289)
T PRK13010 91 GQRPKVVIMVSKFD-----HCLNDLLYRWRMGELDMDIVGIISN-H---PDLQ-PLA-VQHDIP-FHHLPVTP---DTKA 155 (289)
T ss_pred CCCeEEEEEEeCCC-----ccHHHHHHHHHCCCCCcEEEEEEEC-C---hhHH-HHH-HHcCCC-EEEeCCCc---cccc
Confidence 45688988886553 45666666665444 4677665443 3 2222 333 246887 44444321 2333
Q ss_pred HHHHHHHHHHHhcCccEEEeCC
Q 018528 102 PWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~ 123 (354)
.+-..+.+.+++.+||++++..
T Consensus 156 ~~~~~~~~~l~~~~~Dlivlag 177 (289)
T PRK13010 156 QQEAQILDLIETSGAELVVLAR 177 (289)
T ss_pred chHHHHHHHHHHhCCCEEEEeh
Confidence 4555677888899999988643
No 116
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=48.21 E-value=2.6e+02 Score=26.94 Aligned_cols=24 Identities=13% Similarity=-0.075 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHhcCccEEEeC
Q 018528 99 IAEPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 99 ~~e~~a~aLa~li~~~~P~lVL~g 122 (354)
+.+.....|.+++++.+|++|+..
T Consensus 105 ~~~~~~~~L~~iIr~~~PdvVvT~ 128 (283)
T TIGR03446 105 PLEEAAEPLVRVIREFRPHVITTY 128 (283)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEec
Confidence 456778899999999999998875
No 117
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.25 E-value=1.3e+02 Score=29.37 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHhcCC-C-CcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH--
Q 018528 40 KSQSLSAVEAAKSLSD-D-NSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA-- 100 (354)
Q Consensus 40 ~~~slell~~A~~La~-~-~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~-- 100 (354)
++.-+|++-.+..+.+ + .++++|+. +.. + +.+-.++-+. .+|+|+|+.+|- +..++|..
T Consensus 61 nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~--~~g~d~vitvD~H~~~~~~~f~~p 138 (309)
T PRK01259 61 NDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLE--TAGADRVLTMDLHADQIQGFFDIP 138 (309)
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHh--hcCCCEEEEEcCChHHHcCcCCCC
Confidence 5556666554433332 2 36777753 321 1 1234555554 579999999972 33333321
Q ss_pred ---HHHHHHHHHHHHhcC-ccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 101 ---EPWAKLVHMIQQREK-YSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 101 ---e~~a~aLa~li~~~~-P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
-.-.+.+++.+++.+ .+.++++-..-|-..+..+|..||.++.
T Consensus 139 ~~~l~~~~~l~~~i~~~~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~ 185 (309)
T PRK01259 139 VDNLYGSPILLEDIKQKNLENLVVVSPDVGGVVRARALAKRLDADLA 185 (309)
T ss_pred ceeeeecHHHHHHHHhcCCCCcEEEEECCCcHHHHHHHHHHhCCCEE
Confidence 122356677775543 3467888888889999999999998765
No 118
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.78 E-value=2.5e+02 Score=26.28 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEE--EcCC--CCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc-
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLL--AGSG--PSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY- 116 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv--~G~~--~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P- 116 (354)
...++++.|++.+ .++.+-+ .+.- +...+.++++. ..|+|.+++.|. +....|+...+.+..+-++.+.
T Consensus 113 ~~~~~i~~ak~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~--~~G~d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~ 186 (263)
T cd07943 113 VSEQHIGAARKLG--MDVVGFLMMSHMASPEELAEQAKLME--SYGADCVYVTDS--AGAMLPDDVRERVRALREALDPT 186 (263)
T ss_pred HHHHHHHHHHHCC--CeEEEEEEeccCCCHHHHHHHHHHHH--HcCCCEEEEcCC--CCCcCHHHHHHHHHHHHHhCCCc
Confidence 3455666666665 4444433 2211 11334556665 479998888766 5667888888888877666554
Q ss_pred cEEEeCCCCCccchHHHHHHHc
Q 018528 117 SHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 117 ~lVL~g~T~~GrdlaprlAarL 138 (354)
.+=+=.+...|.-+|--+|+..
T Consensus 187 ~l~~H~Hn~~GlA~AN~laAi~ 208 (263)
T cd07943 187 PVGFHGHNNLGLAVANSLAAVE 208 (263)
T ss_pred eEEEEecCCcchHHHHHHHHHH
Confidence 3444466778888888887754
No 119
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=45.67 E-value=43 Score=26.39 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=62.1
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCC-C----------HHHHHHH-----------HhhcCC
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGP-S----------FNEAVKH-----------AASSHP 82 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~-~----------~~~~a~~-----------l~~~~~ 82 (354)
+|+|..+. .+.+.+++..|..++. +.+++++-+=+.. . ....... .. ...
T Consensus 4 ~Ilv~~d~-----~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (140)
T PF00582_consen 4 RILVAIDG-----SEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAE-AEG 77 (140)
T ss_dssp EEEEEESS-----SHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHT
T ss_pred EEEEEECC-----CHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHh-hhc
Confidence 57777763 3568888888888876 6788887653221 0 0000000 00 012
Q ss_pred CccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCcc-------chHHHHHHHcCCCce
Q 018528 83 SISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGK-------NVLPRAAALLDVSPI 143 (354)
Q Consensus 83 GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~Gr-------dlaprlAarL~~~lv 143 (354)
+......+... ...+.+.+.+++.++|+|++|....++ .++-++.....+|++
T Consensus 78 ~~~~~~~~~~~--------~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 78 GIVIEVVIESG--------DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp TSEEEEEEEES--------SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred cceeEEEEEee--------ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 33333333321 356788889999999999999977432 567777777777654
No 120
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.60 E-value=55 Score=33.42 Aligned_cols=51 Identities=12% Similarity=0.036 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccEEEeCCCC-Ccc------chHHHHHHHcCCCceeeeE
Q 018528 97 YPIAEPWAKLVHMIQQREKYSHIISASGS-FGK------NVLPRAAALLDVSPITDVI 147 (354)
Q Consensus 97 ~~~~e~~a~aLa~li~~~~P~lVL~g~T~-~Gr------dlaprlAarL~~~lvtdv~ 147 (354)
.-+.|...+-+.+++++.+||++++|-.. .|| .++-.+..+|++|.++-..
T Consensus 58 ~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy 115 (431)
T TIGR01917 58 GENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMY 115 (431)
T ss_pred hhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEec
Confidence 34566777788899999999999998754 344 5666677789999998774
No 121
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=45.55 E-value=86 Score=28.06 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAK 105 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~ 105 (354)
-+=.|+++-.+|.-.|++.+++..|++-+ ..+ ++... .. .+|-++|-+++-+.-+. .
T Consensus 106 ~gDVvvi~IAGGdT~PvTaaii~ya~~rG---~~T---isT~G--------VF--GigeEev~v~~~eeA~g-------P 162 (217)
T COG4015 106 KGDVVVICIAGGDTIPVTAAIINYAKERG---IKT---ISTNG--------VF--GIGEEEVKVCDAEEAKG-------P 162 (217)
T ss_pred cCCEEEEEecCCCcchhHHHHHHHHHHcC---ceE---eecCc--------ee--ecchhheEEeehhhcCc-------c
Confidence 33467778899999999999999999976 222 22110 01 14455566655432221 3
Q ss_pred HHHHHHHhcCccEEEeCCCCCccch
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNV 130 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~Grdl 130 (354)
+.-.+..+..||+||.+...+=||.
T Consensus 163 ~~~~lldeg~~dHilVgTgk~IRD~ 187 (217)
T COG4015 163 AKFLLLDEGGPDHILVGTGKFIRDF 187 (217)
T ss_pred HHHHHHhcCCCceEEEecCccccCC
Confidence 4445666778999999987776653
No 122
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.45 E-value=55 Score=33.40 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHhcCccEEEeCCCC-Ccc------chHHHHHHHcCCCceeeeE
Q 018528 98 PIAEPWAKLVHMIQQREKYSHIISASGS-FGK------NVLPRAAALLDVSPITDVI 147 (354)
Q Consensus 98 ~~~e~~a~aLa~li~~~~P~lVL~g~T~-~Gr------dlaprlAarL~~~lvtdv~ 147 (354)
-+.|...+-+.+++++.+||++++|... .|| .++-.+..+|++|.++-..
T Consensus 59 en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My 115 (431)
T TIGR01918 59 ENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMY 115 (431)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEec
Confidence 3566777788899999999999998754 344 5666677789999998774
No 123
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.35 E-value=2.6e+02 Score=26.09 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar 137 (354)
.++++++. .+|+|.+++.|. .....|+.+.+.+..+.+...-.+=+=.+...|--++--+++.
T Consensus 142 ~~~~~~~~--~~G~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~laAi 204 (259)
T cd07939 142 IEFAEVAQ--EAGADRLRFADT--VGILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLAAV 204 (259)
T ss_pred HHHHHHHH--HCCCCEEEeCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 34556665 489999999877 4667899999988888776653444556788888888887764
No 124
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=45.02 E-value=56 Score=32.39 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=63.7
Q ss_pred CcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCc-eEEEecccchhhh------h
Q 018528 235 ARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPE-LYMAFGVSGAIQH------L 307 (354)
Q Consensus 235 A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~-lYia~GISGa~QH------~ 307 (354)
.+.|+-.|+| ++---...+..|.+.-++.. -.+++.+.++...=+-...+ |+|++.-||...- .
T Consensus 39 ~~~I~~~g~G-sS~~~~~~~~~~~~~~~~~~--------~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~ 109 (340)
T COG2222 39 IDRILFVGCG-SSLHAATPAKYLLERELGLL--------VAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAEL 109 (340)
T ss_pred CcEEEEEecC-chHHHHHHHHHHHHHhhCce--------eeeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 6799999999 55434455666666433322 15566666666655555555 9999999998553 3
Q ss_pred hccCCCcEEEEEcCCCCCCcccccceEEeecH
Q 018528 308 AGMRDSKVIVAVNKDADAPIFQVADYGLVGDL 339 (354)
Q Consensus 308 ~G~~~s~~IVAIN~D~~ApIf~~aDygiVgD~ 339 (354)
+.-.++.+ |+|=+.+++|+-+.|||-|+=.+
T Consensus 110 a~~~ga~~-i~lT~~~dSpLa~~ad~~i~~~~ 140 (340)
T COG2222 110 AKEGGALT-IALTNEEDSPLARAADYVIPYLA 140 (340)
T ss_pred hccCCCeE-EEEecCCCChhhhcCCeeeeccC
Confidence 34445554 56666688999999999987544
No 125
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=44.69 E-value=93 Score=29.13 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=35.5
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEE
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLV 89 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~ 89 (354)
=++|+|.-.|...+++-++....+++- +...++-|.=+ ..+.++++. .+|||-|++
T Consensus 155 ~~iYLEaGSGa~~~v~~~v~~~~~~~~---~~~LivGGGIr-s~e~A~~~~--~aGAD~IVv 210 (230)
T PF01884_consen 155 PIIYLEAGSGAYGPVPEEVIAAVKKLS---DIPLIVGGGIR-SPEQAREMA--EAGADTIVV 210 (230)
T ss_dssp SEEEEE--TTSSS-HHHHHHHHHHHSS---SSEEEEESS---SHHHHHHHH--CTTSSEEEE
T ss_pred CEEEEEeCCCCCCCccHHHHHHHHhcC---CccEEEeCCcC-CHHHHHHHH--HCCCCEEEE
Confidence 388999878999999888887777775 34444444322 244566666 589996665
No 126
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=44.63 E-value=1.7e+02 Score=27.65 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=57.2
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHH
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWA 104 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a 104 (354)
|.|||+.-+.+ ... .|.+|.+ +.+|.+.+.+... .. .+. ..|...++. ..++.+
T Consensus 1 m~ILvlGGT~e------gr~---la~~L~~~g~~v~~s~~t~~~--~~---~~~--~~g~~~v~~------g~l~~~--- 55 (256)
T TIGR00715 1 MTVLLMGGTVD------SRA---IAKGLIAQGIEILVTVTTSEG--KH---LYP--IHQALTVHT------GALDPQ--- 55 (256)
T ss_pred CeEEEEechHH------HHH---HHHHHHhCCCeEEEEEccCCc--cc---ccc--ccCCceEEE------CCCCHH---
Confidence 67999887542 222 2333332 3567766665431 11 122 245555542 123332
Q ss_pred HHHHHHHHhcCccEEEeCCCCCcc---chHHHHHHHcCCCce
Q 018528 105 KLVHMIQQREKYSHIISASGSFGK---NVLPRAAALLDVSPI 143 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~T~~Gr---dlaprlAarL~~~lv 143 (354)
.+.+++++.++++|+-...++.. +-+-+.+.++|+|++
T Consensus 56 -~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 56 -ELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred -HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 26778889999999999988875 667789999999988
No 127
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=44.10 E-value=43 Score=28.49 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=53.0
Q ss_pred CccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHH-----------HHH
Q 018528 37 GSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEP-----------WAK 105 (354)
Q Consensus 37 g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~-----------~a~ 105 (354)
|.|...+++.+ ++..+.-+|.++..+.+ .+.+.+++. .+....|++.+.+.++...... -.+
T Consensus 8 GSIG~qtLdVi---~~~~d~f~v~~Lsa~~n--~~~L~~q~~--~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 8 GSIGTQTLDVI---RKHPDKFEVVALSAGSN--IEKLAEQAR--EFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp SHHHHHHHHHH---HHCTTTEEEEEEEESST--HHHHHHHHH--HHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred cHHHHHHHHHH---HhCCCceEEEEEEcCCC--HHHHHHHHH--HhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 44555555544 44444457888888888 888888887 4788888776543222111111 135
Q ss_pred HHHHHHHhcCccEEEeCCCCCccchHHHHHH
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNVLPRAAA 136 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~GrdlaprlAa 136 (354)
.|.++++..++|+++.+-+=.. -|-|-+++
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~a-GL~pt~~A 110 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFA-GLKPTLAA 110 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGG-GHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCcccc-hHHHHHHH
Confidence 6778888889999998754332 24444443
No 128
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=43.98 E-value=79 Score=32.03 Aligned_cols=119 Identities=15% Similarity=0.018 Sum_probs=59.0
Q ss_pred cccccccccceeEEEEEecC----CccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEe
Q 018528 17 FHRPSISRSISTLVLGEHEN----GSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVAD 91 (354)
Q Consensus 17 ~~~~~~~~~~~IlV~~E~~~----g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~ 91 (354)
..+..-++.|.|+++.|... |.....-++ .++.|.+ +.+|+++..... ... . ..|+. ++-+.
T Consensus 50 ~~~~~~~~~mrI~~~~~~~~~~~~gG~~~~~~~---l~~~L~~~G~eV~vlt~~~~--~~~---~----~~g~~-v~~~~ 116 (465)
T PLN02871 50 LDTDSRSRPRRIALFVEPSPFSYVSGYKNRFQN---FIRYLREMGDEVLVVTTDEG--VPQ---E----FHGAK-VIGSW 116 (465)
T ss_pred ccccccCCCceEEEEECCcCCcccccHHHHHHH---HHHHHHHCCCeEEEEecCCC--CCc---c----ccCce-eeccC
Confidence 33444477799999987421 223333344 4444443 467877665433 111 1 13433 22111
Q ss_pred C---CCCCCCC-HHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEE
Q 018528 92 S---DKFAYPI-AEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIE 148 (354)
Q Consensus 92 ~---~~l~~~~-~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~ 148 (354)
. +.+.... ......-+..++++.+||+|.+......--.+..++.+++.|++.+.-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~ 177 (465)
T PLN02871 117 SFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHT 177 (465)
T ss_pred CcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEec
Confidence 1 1111100 0111124667788899999987542211122334567789998876543
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.52 E-value=2.6e+02 Score=25.61 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-ccEEEeCCCCCccchHHHHHHH
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK-YSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~-P~lVL~g~T~~GrdlaprlAar 137 (354)
.+.++.+. .+|+|.+++.|. .....|+.+.+.+..+.+... ..+-+=++...|--++--+|+.
T Consensus 149 ~~~~~~~~--~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~ 212 (265)
T cd03174 149 LEVAKALE--EAGADEISLKDT--VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAAL 212 (265)
T ss_pred HHHHHHHH--HcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHH
Confidence 44566666 589999998877 456788999888888776554 2333335677788888777764
No 130
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=43.07 E-value=23 Score=29.88 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=36.4
Q ss_pred CceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCCCCCCcccccceEEee
Q 018528 280 DLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVG 337 (354)
Q Consensus 280 ~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D~~ApIf~~aDygiVg 337 (354)
.-++..++++.. +=|+|+|+|-- .+|.+++.||+...+.+.+ .+-||-..+
T Consensus 15 ~v~~~l~~~~~~-~gwvaiGfs~~----~~M~~~d~vv~~~~~~g~~--~v~d~~~~~ 65 (148)
T smart00664 15 SIAFELSGPTST-NGWVAIGFSPD----GQMAGADVVVAWVDNNGRV--TVKDYYTPG 65 (148)
T ss_pred eEEEEEEEecCC-CCEEEEEECCC----CCcCCCCEEEEEEcCCCCE--EEEEEEcCC
Confidence 446667777777 77999999875 7899999999988764433 233444443
No 131
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.39 E-value=58 Score=29.87 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=37.1
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEE
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLV 89 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~ 89 (354)
=|+|+|.-+|...+.+.++++..++.. ++-. .+|.+-...+.++++. ..|+|.|++
T Consensus 149 ~~i~Le~~sGa~~~v~~e~i~~Vk~~~---~~Pv-~vGGGIrs~e~a~~l~--~~GAD~VVV 204 (205)
T TIGR01769 149 KWVYLEAGSGASYPVNPETISLVKKAS---GIPL-IVGGGIRSPEIAYEIV--LAGADAIVT 204 (205)
T ss_pred CEEEEEcCCCCCCCCCHHHHHHHHHhh---CCCE-EEeCCCCCHHHHHHHH--HcCCCEEEe
Confidence 388999888888889999999887764 2222 2333211244456665 379998875
No 132
>PRK06849 hypothetical protein; Provisional
Probab=42.33 E-value=2.1e+02 Score=28.20 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=50.0
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHH
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWA 104 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a 104 (354)
.|+|+|..-.. +..++++....+.+ .+| +++... ........ ..+|+-+.+.+|. .+++.|.
T Consensus 4 ~~~VLI~G~~~-----~~~l~iar~l~~~G--~~V--i~~d~~--~~~~~~~s----~~~d~~~~~p~p~---~d~~~~~ 65 (389)
T PRK06849 4 KKTVLITGARA-----PAALELARLFHNAG--HTV--ILADSL--KYPLSRFS----RAVDGFYTIPSPR---WDPDAYI 65 (389)
T ss_pred CCEEEEeCCCc-----HHHHHHHHHHHHCC--CEE--EEEeCC--chHHHHHH----HhhhheEEeCCCC---CCHHHHH
Confidence 47788875321 24555444444433 444 444444 12333221 3578777776664 4678999
Q ss_pred HHHHHHHHhcCccEEEeCCC
Q 018528 105 KLVHMIQQREKYSHIISASG 124 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~T 124 (354)
+.|.++++++++|+|+-..+
T Consensus 66 ~~L~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 66 QALLSIVQRENIDLLIPTCE 85 (389)
T ss_pred HHHHHHHHHcCCCEEEECCh
Confidence 99999999999998886554
No 133
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.18 E-value=2.6e+02 Score=26.38 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH
Q 018528 70 FNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 70 ~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar 137 (354)
+.++++++. .+|+|++++.|. .....|+.....+..+-+..+..+-+=.+...|-.++..+++.
T Consensus 143 l~~~~~~~~--~~g~~~i~l~Dt--~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~ 206 (262)
T cd07948 143 LLRVYRAVD--KLGVNRVGIADT--VGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAAL 206 (262)
T ss_pred HHHHHHHHH--HcCCCEEEECCc--CCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHH
Confidence 344556666 479999988876 4567888888888887666555555667788898888888764
No 134
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=41.74 E-value=26 Score=28.43 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=27.6
Q ss_pred eeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcCC
Q 018528 282 QVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKD 322 (354)
Q Consensus 282 qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~D 322 (354)
++..+|+.- ..=|+|+|.|. -.+|.+++.|+..+.|
T Consensus 19 ~~~l~~~~~-~~~w~aiGfs~----~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 19 EFELTGPAN-TNGWVAIGFSD----DGGMGGSDVVVCWVDD 54 (124)
T ss_pred EEEEEeccC-CCCEEEEEEcc----ccCCCCCcEEEEEEcC
Confidence 344555444 37899999999 5669999999998886
No 135
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=41.61 E-value=1.8e+02 Score=30.06 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~ 121 (354)
..+.+.....+|+ -++..+..... .....+.+. ...+ +.++++++. +.+. +.+.+++.+||++|-
T Consensus 335 ~~~~la~~l~ElG--m~v~~~~~~~~--~~~~~~~l~-~~~~-~~~~v~~d~-----~~~e----~~~~i~~~~pDliig 399 (475)
T PRK14478 335 KSWSVVKALQELG--MEVVGTSVKKS--TDEDKERIK-ELMG-PDAHMIDDA-----NPRE----LYKMLKEAKADIMLS 399 (475)
T ss_pred hHHHHHHHHHHCC--CEEEEEEEECC--CHHHHHHHH-HHcC-CCcEEEeCC-----CHHH----HHHHHhhcCCCEEEe
Confidence 3455555556666 66666655543 122122222 1123 234455542 2222 345567789999996
Q ss_pred CCCCCccchHHHHHHHcCCCce
Q 018528 122 ASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 122 g~T~~GrdlaprlAarL~~~lv 143 (354)
+ ...-.+|.++|+|++
T Consensus 400 ~------s~~~~~a~k~giP~~ 415 (475)
T PRK14478 400 G------GRSQFIALKAGMPWL 415 (475)
T ss_pred c------CchhhhhhhcCCCEE
Confidence 4 334478889999998
No 136
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.46 E-value=2.2e+02 Score=27.26 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHhcCCCCcEEEEEEcCC-----CCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 018528 40 KSQSLSAVEAAKSLSDDNSVSMLLAGSG-----PSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQRE 114 (354)
Q Consensus 40 ~~~slell~~A~~La~~~~V~avv~G~~-----~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~ 114 (354)
.+..+|+++..++-. .++-.++++.- ...+...+.+. ..|+|-+++.|-| ...+.-+.+.++++
T Consensus 78 ~~~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~--~~GvdGlivpDLP-------~ee~~~~~~~~~~~ 146 (265)
T COG0159 78 LEDTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAK--EAGVDGLLVPDLP-------PEESDELLKAAEKH 146 (265)
T ss_pred HHHHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHH--HcCCCEEEeCCCC-------hHHHHHHHHHHHHc
Confidence 355677776666543 44455566531 12577777877 5899999998765 23445667777888
Q ss_pred CccEEEeCCCCCccchHHHHH
Q 018528 115 KYSHIISASGSFGKNVLPRAA 135 (354)
Q Consensus 115 ~P~lVL~g~T~~GrdlaprlA 135 (354)
+-+.|++-+-+...+...+++
T Consensus 147 gi~~I~lvaPtt~~~rl~~i~ 167 (265)
T COG0159 147 GIDPIFLVAPTTPDERLKKIA 167 (265)
T ss_pred CCcEEEEeCCCCCHHHHHHHH
Confidence 989888866444444444444
No 137
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=41.42 E-value=2.9e+02 Score=28.73 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=65.0
Q ss_pred cccccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEE---cCCCC----HHHHHHHHhhcCCCccEEEEEeCC
Q 018528 21 SISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLA---GSGPS----FNEAVKHAASSHPSISQVLVADSD 93 (354)
Q Consensus 21 ~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~---G~~~~----~~~~a~~l~~~~~GaD~V~~~~~~ 93 (354)
+...-++|+-+.++-+ --+.....++.+++.+ ..+. +.+ ++..- ..+.++++. .+|+|.+++.|.-
T Consensus 114 a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~~G--~~~~-~~i~yt~sp~~t~~y~~~~a~~l~--~~Gad~I~IkDta 186 (468)
T PRK12581 114 SAQNGIDVFRIFDALN--DPRNIQQALRAVKKTG--KEAQ-LCIAYTTSPVHTLNYYLSLVKELV--EMGADSICIKDMA 186 (468)
T ss_pred HHHCCCCEEEEcccCC--CHHHHHHHHHHHHHcC--CEEE-EEEEEEeCCcCcHHHHHHHHHHHH--HcCCCEEEECCCC
Confidence 3444467776666544 1234566677777776 3332 222 22211 234567776 5899998887764
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCccEE--EeCCCCCccchHHHHHHH
Q 018528 94 KFAYPIAEPWAKLVHMIQQREKYSHI--ISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 94 ~l~~~~~e~~a~aLa~li~~~~P~lV--L~g~T~~GrdlaprlAar 137 (354)
....|+...+.+.++-+ .+++- +=.++..|-.++-.+|+.
T Consensus 187 --G~l~P~~v~~Lv~alk~--~~~~pi~~H~Hnt~GlA~An~laAi 228 (468)
T PRK12581 187 --GILTPKAAKELVSGIKA--MTNLPLIVHTHATSGISQMTYLAAV 228 (468)
T ss_pred --CCcCHHHHHHHHHHHHh--ccCCeEEEEeCCCCccHHHHHHHHH
Confidence 45678888888887744 34443 445677888888888664
No 138
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=41.23 E-value=1.9e+02 Score=26.38 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-ccEEEeCCCCCccchHHHHHHHc
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK-YSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~-P~lVL~g~T~~GrdlaprlAarL 138 (354)
.++++.+. .+|+|.+++.|. .....|+.+.+.+..+-+... ..+=+=.+...|--+|--+++..
T Consensus 140 ~~~~~~~~--~~g~~~i~l~Dt--~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~ 204 (237)
T PF00682_consen 140 LELAEALA--EAGADIIYLADT--VGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALE 204 (237)
T ss_dssp HHHHHHHH--HHT-SEEEEEET--TS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHH
T ss_pred HHHHHHHH--HcCCeEEEeeCc--cCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHH
Confidence 44566666 479999999887 456789999999888877765 33444467888888888776644
No 139
>PRK11178 uridine phosphorylase; Provisional
Probab=41.04 E-value=94 Score=29.20 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=40.0
Q ss_pred CceEEEecccchhhhhhccCCCcEEEE---EcCCCCCCcccccceEEeecHHHHHHHHHhhccc
Q 018528 292 PELYMAFGVSGAIQHLAGMRDSKVIVA---VNKDADAPIFQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G~~~s~~IVA---IN~D~~ApIf~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
|+..|-+|.+|++|.= ++--++||+ +..|-+...+.-..|-.+.| +++.++|++.+++
T Consensus 84 ~~~iI~~GtaG~l~~~--l~~GDvVI~~~a~~~Dg~s~~y~~~~~p~~~~-~~~~~~L~~~~~~ 144 (251)
T PRK11178 84 VRTFLRIGTTGAIQPH--INVGDVLVTTASVRLDGASLHFAPLEFPAVAD-FECTTALVEAAKS 144 (251)
T ss_pred CCEEEEEeccccCCCC--CCCCCEEEecceecCCCCccccCCCCcCCCCC-HHHHHHHHHHHHH
Confidence 8999999999999864 666777775 45665554444334444445 6677888877653
No 140
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=40.59 E-value=61 Score=31.75 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEE
Q 018528 108 HMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIE 148 (354)
Q Consensus 108 a~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~ 148 (354)
.+.+++.+||+|+.-....+ +.-+|.++|+|++.-...
T Consensus 97 ~~~~~~~~pDlvi~d~~~~~---~~~~A~~~giP~v~~~~~ 134 (401)
T cd03784 97 VAAARDWGPDLVVADPLAFA---GAVAAEALGIPAVRLLLG 134 (401)
T ss_pred HHHhcccCCCEEEeCcHHHH---HHHHHHHhCCCeEEeecc
Confidence 34445578999998764433 567888999998866553
No 141
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=40.56 E-value=3.1e+02 Score=25.67 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc---cEEEeCCCCCccchHHHHHHHc
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY---SHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P---~lVL~g~T~~GrdlaprlAarL 138 (354)
.++++++. .+|+|.+++.|. .....|+...+.+..+-+.... .+=+=.+...|..++--+++..
T Consensus 146 ~~~~~~~~--~~G~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~ 212 (268)
T cd07940 146 IEVVEAAI--EAGATTINIPDT--VGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVE 212 (268)
T ss_pred HHHHHHHH--HcCCCEEEECCC--CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHH
Confidence 44566666 489999999877 4567889998888877765531 2334466788888888876653
No 142
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=39.63 E-value=1.2e+02 Score=31.27 Aligned_cols=67 Identities=7% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHH--HHHHHHHhcCccEE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAK--LVHMIQQREKYSHI 119 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~--aLa~li~~~~P~lV 119 (354)
....++.++++++ +..+++..+ .+..+.. ..-+|+.|.+..... +.|.+ .|.+++++.++|.|
T Consensus 13 ia~~ii~a~~~~G----i~~v~v~~~--~d~~a~~----~~~aD~~~~i~~~~~-----~~y~d~~~i~~~a~~~~~D~I 77 (472)
T PRK07178 13 IAVRIVRACAEMG----IRSVAIYSE--ADRHALH----VKRADEAYSIGADPL-----AGYLNPRRLVNLAVETGCDAL 77 (472)
T ss_pred HHHHHHHHHHHcC----CeEEEEeCC--CccCCcc----HhhCCEEEEcCCCch-----hhhcCHHHHHHHHHHHCCCEE
Confidence 4777888889887 455566555 1221111 123788887753222 33443 67778888899998
Q ss_pred EeCC
Q 018528 120 ISAS 123 (354)
Q Consensus 120 L~g~ 123 (354)
+-+.
T Consensus 78 ~pg~ 81 (472)
T PRK07178 78 HPGY 81 (472)
T ss_pred EeCC
Confidence 8654
No 143
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.46 E-value=2.9e+02 Score=24.97 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=45.0
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHH
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPW 103 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~ 103 (354)
+|+|.|++=.. |. .++.+-.+.+=++ ..+|.+++--... ..+.+.+. ..|.. ++.++...+ .+.+.+
T Consensus 1 m~ki~vl~sg~-gs----~~~~ll~~~~~~~~~~~I~~vvs~~~~--~~~~~~a~--~~gIp-~~~~~~~~~--~~~~~~ 68 (200)
T PRK05647 1 MKRIVVLASGN-GS----NLQAIIDACAAGQLPAEIVAVISDRPD--AYGLERAE--AAGIP-TFVLDHKDF--PSREAF 68 (200)
T ss_pred CceEEEEEcCC-Ch----hHHHHHHHHHcCCCCcEEEEEEecCcc--chHHHHHH--HcCCC-EEEECcccc--CchhHh
Confidence 47788887543 32 3333333322111 2455554443221 12222222 46887 555544332 234566
Q ss_pred HHHHHHHHHhcCccEEEe
Q 018528 104 AKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 104 a~aLa~li~~~~P~lVL~ 121 (354)
...+.+.+++.+||++++
T Consensus 69 ~~~~~~~l~~~~~D~iv~ 86 (200)
T PRK05647 69 DAALVEALDAYQPDLVVL 86 (200)
T ss_pred HHHHHHHHHHhCcCEEEh
Confidence 677888888999999886
No 144
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=39.34 E-value=2.1e+02 Score=26.86 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=57.0
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEE-eCCCCCC------C
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVA-DSDKFAY------P 98 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~-~~~~l~~------~ 98 (354)
|+|+.++... .+...+.. ++-|+.|+ +.+|+.++-|.. .+..+.-. .......+... ++..++. .
T Consensus 1 MkIl~~v~~~--G~GH~~R~-~~la~~Lr-g~~v~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (318)
T PF13528_consen 1 MKILFYVQGH--GLGHASRC-LALARALR-GHEVTFITSGPA---PEFLKPRF-PVREIPGLGPIQENGRLDRWKTVRNN 72 (318)
T ss_pred CEEEEEeCCC--CcCHHHHH-HHHHHHHc-cCceEEEEcCCc---HHHhcccc-CEEEccCceEeccCCccchHHHHHHH
Confidence 7888888653 34444544 45677774 578887766643 23221101 00111111111 1111111 0
Q ss_pred -----CHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCcee
Q 018528 99 -----IAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 99 -----~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvt 144 (354)
......+.+.+.+++.+||+|+.-..+. +...|.+.+.|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~----~~~aa~~~giP~i~ 119 (318)
T PF13528_consen 73 IRWLARLARRIRREIRWLREFRPDLVISDFYPL----AALAARRAGIPVIV 119 (318)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHH----HHHHHHhcCCCEEE
Confidence 0122334455667888999999765444 67888999999764
No 145
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.33 E-value=1.1e+02 Score=23.96 Aligned_cols=74 Identities=12% Similarity=0.004 Sum_probs=42.6
Q ss_pred EEEEcC-CCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCcc---chHHHHHH
Q 018528 61 MLLAGS-GPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGK---NVLPRAAA 136 (354)
Q Consensus 61 avv~G~-~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~Gr---dlaprlAa 136 (354)
++++|. +.-...+.+.+. .+|...+++ .+. ... .....-|.+.++ ++|+|++.-+..+. ..+-+.|.
T Consensus 2 vliVGG~~~~~~~~~~~~~--~~G~~~~~h--g~~-~~~--~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILE--KYGGKLIHH--GRD-GGD--EKKASRLPSKIK--KADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHH--HcCCEEEEE--ecC-CCC--ccchhHHHHhcC--CCCEEEEEeCCcChHHHHHHHHHHH
Confidence 456666 211334444444 589988777 111 111 122223444543 67888888776654 56667888
Q ss_pred HcCCCce
Q 018528 137 LLDVSPI 143 (354)
Q Consensus 137 rL~~~lv 143 (354)
+.+.|++
T Consensus 73 k~~ip~~ 79 (97)
T PF10087_consen 73 KYGIPII 79 (97)
T ss_pred HcCCcEE
Confidence 8888876
No 146
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=39.28 E-value=23 Score=34.88 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=47.0
Q ss_pred ceEEEecccchhhhhhccCC--CcEEEEEcCCCCCCcccccceEEee--cHHHHHHHHHhhcc
Q 018528 293 ELYMAFGVSGAIQHLAGMRD--SKVIVAVNKDADAPIFQVADYGLVG--DLFEVIPELLEKFP 351 (354)
Q Consensus 293 ~lYia~GISGa~QH~~G~~~--s~~IVAIN~D~~ApIf~~aDygiVg--D~~~vlp~l~~~l~ 351 (354)
++|+.=|-|++.+-+..++. .=+|++--.||++|++..||+..+- |-.+.+.-+++--+
T Consensus 1 riwfn~~~s~~~~~i~~lr~~~~~~i~~sh~~~~~~~~~~aD~~~~eP~~~~~yv~~~l~~C~ 63 (329)
T PF15632_consen 1 RIWFNRGFSSQRDIIRSLRANRDFTIIASHRDPRAPILYAADEAYLEPADGEEYVDWCLDFCK 63 (329)
T ss_pred CEEecCCCccHHHHHHHHHcCCCeEEEEEeCCCCchHHhcCceeeecCCCHHHHHHHHHHHHH
Confidence 47888999999999999998 7789999999999999999997753 33445555554443
No 147
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=39.17 E-value=1.9e+02 Score=22.82 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcCC--CCcEEEEEEcC--CCC---------------HHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH
Q 018528 41 SQSLSAVEAAKSLSD--DNSVSMLLAGS--GPS---------------FNEAVKHAASSHPSISQVLVADSDKFAYPIAE 101 (354)
Q Consensus 41 ~~slell~~A~~La~--~~~V~avv~G~--~~~---------------~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e 101 (354)
+.+..+++.|..|+. +.+++++-+=+ ... .+.+.+.+. .+|.+--..+.. .+
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~---- 80 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAA--SLGVPVHTIIRI---DH---- 80 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhh--hcCCceEEEEEe---cC----
Confidence 578889999999886 57777765521 100 011112222 356652222211 01
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCCCcc-------chHHHHHHHcCCCce
Q 018528 102 PWAKLVHMIQQREKYSHIISASGSFGK-------NVLPRAAALLDVSPI 143 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~~Gr-------dlaprlAarL~~~lv 143 (354)
...+.|.+++++.+.|+|++|....+. ..+-++..+..+|++
T Consensus 81 ~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvl 129 (132)
T cd01988 81 DIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVA 129 (132)
T ss_pred CHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEE
Confidence 244678888888999999999865432 455566666666543
No 148
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.11 E-value=4.5e+02 Score=27.06 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEE---EcCCC---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc
Q 018528 43 SLSAVEAAKSLSDDNSVSMLL---AGSGP---SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY 116 (354)
Q Consensus 43 slell~~A~~La~~~~V~avv---~G~~~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P 116 (354)
..++++.|++.+ ..+.+-+ .++.. -..+.++++. .+|+|.+++.|.- ....|+...+.+..+-++.+-
T Consensus 125 ~~~~v~~ak~~G--~~v~~~i~~t~~p~~~~~~~~~~a~~l~--~~Gad~I~i~Dt~--G~l~P~~v~~lv~alk~~~~~ 198 (448)
T PRK12331 125 LETAVKATKKAG--GHAQVAISYTTSPVHTIDYFVKLAKEMQ--EMGADSICIKDMA--GILTPYVAYELVKRIKEAVTV 198 (448)
T ss_pred HHHHHHHHHHcC--CeEEEEEEeecCCCCCHHHHHHHHHHHH--HcCCCEEEEcCCC--CCCCHHHHHHHHHHHHHhcCC
Confidence 555677777765 4443221 22210 1245677776 5899999888764 456788888888877666543
Q ss_pred cEEEeCCCCCccchHHHHHH-HcCCC
Q 018528 117 SHIISASGSFGKNVLPRAAA-LLDVS 141 (354)
Q Consensus 117 ~lVL~g~T~~GrdlaprlAa-rL~~~ 141 (354)
.+=+=.+...|-.++-.+|+ ..|+-
T Consensus 199 pi~~H~Hnt~GlA~AN~laAieaGad 224 (448)
T PRK12331 199 PLEVHTHATSGIAEMTYLKAIEAGAD 224 (448)
T ss_pred eEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 34444677889999998876 44433
No 149
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.87 E-value=2.7e+02 Score=27.46 Aligned_cols=99 Identities=7% Similarity=0.030 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH-
Q 018528 39 IKSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA- 100 (354)
Q Consensus 39 l~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~- 100 (354)
.++.-+|++-.+..+.+ ..+|++|+. |.. + +.+-.++-+. .+|+|+|+.+|- ++.++|-.
T Consensus 81 ~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~--~~g~d~vitvDlH~~~~~~fF~i 158 (330)
T PRK02812 81 VNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLIT--KAGADRVLAMDLHSAQIQGYFDI 158 (330)
T ss_pred ccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHH--hcCCCEEEEEECCchHHcCccCC
Confidence 35566777555444433 246887763 321 1 2233555554 579999999972 33333321
Q ss_pred ----HHHHHHHHHHHHhc-CccEEEeCCCCCccchHHHHHHHcC
Q 018528 101 ----EPWAKLVHMIQQRE-KYSHIISASGSFGKNVLPRAAALLD 139 (354)
Q Consensus 101 ----e~~a~aLa~li~~~-~P~lVL~g~T~~GrdlaprlAarL~ 139 (354)
..-...+.+.+++. -.+.++++-...|...+-.+|..|+
T Consensus 159 pv~nl~~~~~l~~~i~~~~~~~~vvVsPD~gg~~ra~~~A~~L~ 202 (330)
T PRK02812 159 PCDHVYGSPVLLDYLASKNLEDIVVVSPDVGGVARARAFAKKLN 202 (330)
T ss_pred CceeeeChHHHHHHHHhcCCCCeEEEEECCccHHHHHHHHHHhC
Confidence 12234566666553 3578999999999999999999994
No 150
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=38.37 E-value=42 Score=31.39 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 103 WAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 103 ~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
.+..+++.++..+||.|+...+ .|=-+|..+|.+||.|++
T Consensus 99 v~~~la~~~~~~~~D~Vvtv~~-~GI~lA~~lA~~L~~p~v 138 (238)
T PRK08558 99 IAPVVAERFMGLRVDVVLTAAT-DGIPLAVAIASYFGADLV 138 (238)
T ss_pred HHHHHHHHccCCCCCEEEEECc-ccHHHHHHHHHHHCcCEE
Confidence 3445566666667899987776 888999999999999976
No 151
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=38.23 E-value=1.2e+02 Score=24.54 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCccEEEeCC
Q 018528 105 KLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~ 123 (354)
+.|.+.+++.++|+++.|.
T Consensus 52 ~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGP 70 (100)
T ss_dssp HHHHHHHHHTTESEEEESS
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 5677888899999999986
No 152
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.28 E-value=4.4e+02 Score=28.18 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=63.7
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEE-EE--EcCCC---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCC
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSM-LL--AGSGP---SFNEAVKHAASSHPSISQVLVADSDKFAYPI 99 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~a-vv--~G~~~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~ 99 (354)
++++-+.+.-+. + +...+.++.|++.+ ..+.+ +. ..+.. -..++++++. .+|+|.+++.|.- ....
T Consensus 111 id~~rifd~lnd-~-~~~~~ai~~ak~~G--~~~~~~i~yt~~p~~~~~~~~~~a~~l~--~~Gad~i~i~Dt~--G~l~ 182 (593)
T PRK14040 111 MDVFRVFDAMND-P-RNLETALKAVRKVG--AHAQGTLSYTTSPVHTLQTWVDLAKQLE--DMGVDSLCIKDMA--GLLK 182 (593)
T ss_pred CCEEEEeeeCCc-H-HHHHHHHHHHHHcC--CeEEEEEEEeeCCccCHHHHHHHHHHHH--HcCCCEEEECCCC--CCcC
Confidence 554444443322 1 34455677777765 33322 22 23311 1345667776 5899988887764 5578
Q ss_pred HHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH
Q 018528 100 AEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 100 ~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar 137 (354)
|+...+.+..+.+..+-.+=+=.+...|..++..+|+.
T Consensus 183 P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 183 PYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHH
Confidence 88888888888776654455556788888888877654
No 153
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=37.20 E-value=37 Score=32.13 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=36.2
Q ss_pred CceEEEecccchhhhhhc------cCCCcEEEEEcCCCCCCcccccceEEeecHHHHH
Q 018528 292 PELYMAFGVSGAIQHLAG------MRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVI 343 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G------~~~s~~IVAIN~D~~ApIf~~aDygiVgD~~~vl 343 (354)
.+|.|.+|-|+++.=... -+++ .||-||.+|. |.=..||+.|-|++-++|
T Consensus 205 aDlllviGTSl~V~pa~~l~~~a~~~g~-~viiIN~~~t-~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 205 ADALLVLGSSLMVYSGYRFVLAAAEAGL-PIAIVNIGPT-RADHLATLKVDARCGEVL 260 (260)
T ss_pred CCEEEEeCcCceecchhhHHHHHHHCCC-cEEEEcCCCC-CCCccccEEEeCChhhhC
Confidence 688999999998863222 2343 4677999974 454678999999988764
No 154
>PRK07206 hypothetical protein; Provisional
Probab=36.99 E-value=1.3e+02 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCcee
Q 018528 105 KLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 105 ~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvt 144 (354)
+.+.++++++++|.|+.+. ...-.++.+++.+++.++..
T Consensus 60 ~~l~~~~~~~~~d~vi~~~-e~~~~~~a~l~~~l~l~~~~ 98 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGA-ESGVELADRLAEILTPQYSN 98 (416)
T ss_pred HHHHHHHHHcCCCEEEECC-CccHHHHHHHHHhcCCCcCC
Confidence 4566778888999988754 45667888899999887533
No 155
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.88 E-value=2.3e+02 Score=26.84 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCCCcEEE-EEE--cCCC---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 018528 42 QSLSAVEAAKSLSDDNSVSM-LLA--GSGP---SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK 115 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~a-vv~--G~~~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~ 115 (354)
...+.++.|++.+ -++.. +.+ ++.. ...+.++++. .+|+|.+++.|. .....|+.+.+.+..+-+..+
T Consensus 119 ~~~~~i~~ak~~G--~~v~~~i~~~~~~~~~~~~~~~~~~~~~--~~Ga~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 119 NLEVAIKAVKKAG--KHVEGAICYTGSPVHTLEYYVKLAKELE--DMGADSICIKDM--AGLLTPYAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHHHHCC--CeEEEEEEecCCCCCCHHHHHHHHHHHH--HcCCCEEEEcCC--CCCCCHHHHHHHHHHHHHhCC
Confidence 3455566676665 44443 222 2211 1234556666 589999999877 466789999888888877665
Q ss_pred ccEEEeCCCCCccchHHHHHHH
Q 018528 116 YSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 116 P~lVL~g~T~~GrdlaprlAar 137 (354)
..+=+=.+...|.-++--+++.
T Consensus 193 ~~l~~H~Hnd~GlA~aN~laA~ 214 (275)
T cd07937 193 LPIHLHTHDTSGLAVATYLAAA 214 (275)
T ss_pred CeEEEEecCCCChHHHHHHHHH
Confidence 4444446778888888888664
No 156
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=36.88 E-value=71 Score=28.77 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=39.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCC--------------HHHHHHHHHHHHHhcCccEEEe
Q 018528 60 SMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPI--------------AEPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 60 ~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~--------------~e~~a~aLa~li~~~~P~lVL~ 121 (354)
.++++|.+..-.+.++.|+ ..|+.++.++|++..+..+ -..-++++++.+++.+|++-+-
T Consensus 21 ~VlviG~gglGsevak~L~--~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 21 KVLIIGAGALGAEIAKNLV--LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred cEEEECCCHHHHHHHHHHH--HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 4566777643456788888 6899999999987553111 1234566777777777765443
No 157
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=36.27 E-value=4.5e+02 Score=26.20 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHc
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL 138 (354)
++++.+. .+|+|.+++.|. .....|+.+.+.+..+.+..+..+=+=.+...|.-+|--+|+..
T Consensus 149 ~~~~~~~--~~Ga~~I~l~DT--~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~ 211 (378)
T PRK11858 149 EFAKAAE--EAGADRVRFCDT--VGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIE 211 (378)
T ss_pred HHHHHHH--hCCCCEEEEecc--CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHH
Confidence 3455555 589999999877 46678999999998887766545555677888988888887754
No 158
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=35.78 E-value=1.5e+02 Score=25.85 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=58.8
Q ss_pred CCCCCcEEEEeCccCCChhcHHHHHHHHHHh---CCeecccHhhHhcCCCCCCceeccCCceeC-CceEEEecccchhhh
Q 018528 231 DLGSARIVVTGGRGLKSAENFKMIEKLAEKL---GAAVGATRAVVDAGFVPNDLQVGQTGKIVA-PELYMAFGVSGAIQH 306 (354)
Q Consensus 231 ~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~l---ga~vG~SRp~vd~gw~p~~~qIGqtG~~V~-P~lYia~GISGa~QH 306 (354)
.|.+|+.|.-.|.|-. ....+.++..| |-.+=+. -|. ...... -++.|++..||....
T Consensus 29 ~i~~a~~I~i~G~G~S----~~~A~~~~~~l~~~g~~~~~~---~~~-----------~~~~~~~~D~vI~iS~sG~t~~ 90 (179)
T cd05005 29 AILNAKRIFVYGAGRS----GLVAKAFAMRLMHLGLNVYVV---GET-----------TTPAIGPGDLLIAISGSGETSS 90 (179)
T ss_pred HHHhCCeEEEEecChh----HHHHHHHHHHHHhCCCeEEEe---CCC-----------CCCCCCCCCEEEEEcCCCCcHH
Confidence 4567899999999954 34566666666 3222111 010 012344 479999999998886
Q ss_pred hhcc------CCCcEEEEEcCCCCCCcccccceEEee
Q 018528 307 LAGM------RDSKVIVAVNKDADAPIFQVADYGLVG 337 (354)
Q Consensus 307 ~~G~------~~s~~IVAIN~D~~ApIf~~aDygiVg 337 (354)
+.-+ ++++ ||+|-..++.|+-+.||+-+.-
T Consensus 91 ~i~~~~~ak~~g~~-iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 91 VVNAAEKAKKAGAK-VVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHHHCCCe-EEEEECCCCCchHHhCCEEEEe
Confidence 5533 4444 7789999999999999998853
No 159
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.48 E-value=1.7e+02 Score=29.03 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH------------HHHHHHHHHHHhcC-----------
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAE------------PWAKLVHMIQQREK----------- 115 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e------------~~a~aLa~li~~~~----------- 115 (354)
-.++++|.+..-..+++.|+ ..|+.++.++|++..+..+-- .-++++++.+++.+
T Consensus 29 ~~VlivG~GGlGs~~a~~La--~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLA--GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred CeEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 46677887632345677787 589999999997753332111 22334444444443
Q ss_pred ------------ccEEEeCC-CCCccchHHHHHHHcCCCceee
Q 018528 116 ------------YSHIISAS-GSFGKNVLPRAAALLDVSPITD 145 (354)
Q Consensus 116 ------------P~lVL~g~-T~~GrdlaprlAarL~~~lvtd 145 (354)
+|+|+... +...|.+.-.++.+++.|++..
T Consensus 107 i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 107 LTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred cCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45555554 3334566667777777776644
No 160
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=35.38 E-value=2.2e+02 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=23.6
Q ss_pred HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
-+.+++++.+||+++- ....-++|.+++.|++
T Consensus 363 e~~~~l~~~~~dliiG------~s~~~~~a~~~~ip~~ 394 (429)
T cd03466 363 DIESYAKELKIDVLIG------NSYGRRIAEKLGIPLI 394 (429)
T ss_pred HHHHHHHhcCCCEEEE------CchhHHHHHHcCCCEE
Confidence 3556677788998883 3334588899999987
No 161
>PLN02293 adenine phosphoribosyltransferase
Probab=35.34 E-value=74 Score=28.61 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 102 PWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
..++.+++.++..++|.|+ +-...|--+|..+|.+|+.|++
T Consensus 49 ~~~~~l~~~~~~~~~d~Iv-g~e~~Gi~lA~~lA~~Lg~p~v 89 (187)
T PLN02293 49 DTIDLFVERYRDMGISVVA-GIEARGFIFGPPIALAIGAKFV 89 (187)
T ss_pred HHHHHHHHHHhhcCCCEEE-EeCCCchHHHHHHHHHHCCCEE
Confidence 3456666667666788776 4577888999999999999976
No 162
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.10 E-value=2.8e+02 Score=25.29 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCCccccccccccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEE---------cCCC-CHHHHHHHHhhcCC
Q 018528 13 RPRCFHRPSISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLA---------GSGP-SFNEAVKHAASSHP 82 (354)
Q Consensus 13 ~~~~~~~~~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~---------G~~~-~~~~~a~~l~~~~~ 82 (354)
..-|.+=+--+|+.+++.++|+. .++.+++....-. |.- =|+- |+++ ..+.+.+.+. ..
T Consensus 65 ~~~C~IC~d~~Rd~~~iCVVE~~------~Dv~aiE~~~~y~--G~Y-hVL~G~iSPldgigp~~l~i~~L~~Ri~--~~ 133 (195)
T TIGR00615 65 QEVCNICSDERRDNSVICVVEDP------KDVFALEKTKEFR--GRY-HVLGGHISPLDGIGPEDLTIAALLKRLQ--EE 133 (195)
T ss_pred CCcCCCCCCCCCCCCEEEEECCH------HHHHHHHhhCccc--eEE-EEccCccCccCCCChhhcCHHHHHHHHh--cC
Confidence 34466666778888888888864 6888888887765 332 2222 2221 2566677765 46
Q ss_pred CccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 018528 83 SISQVLVADSDKFAYPIAEPWAKLVHMIQQREK 115 (354)
Q Consensus 83 GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~ 115 (354)
++.+|+++-+|-.+ .|.++.-|+++++..+
T Consensus 134 ~v~EVIlAt~~tvE---Ge~Ta~yi~~~lk~~~ 163 (195)
T TIGR00615 134 SVKEVILATNPTVE---GEATALYIARLLQPFG 163 (195)
T ss_pred CCcEEEEeCCCCch---HHHHHHHHHHHhhhcC
Confidence 89999999888655 5788888888887643
No 163
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.88 E-value=1.3e+02 Score=28.09 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=38.7
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEE
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVA 90 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~ 90 (354)
=+||+|.-+|.-.+...++++..++..+ .+... +|.+-...+.++++. .+|+|.|++-
T Consensus 151 ~~vYlE~gs~~g~~v~~e~i~~v~~~~~--~~pl~-vGGGIrs~e~a~~l~--~aGAD~VVVG 208 (223)
T TIGR01768 151 PIIYLEAGSGAPEPVPPELVAEVKKVLD--KARLF-VGGGIRSVEKAREMA--EAGADTIVTG 208 (223)
T ss_pred cEEEEEecCCCCCCcCHHHHHHHHHHcC--CCCEE-EecCCCCHHHHHHHH--HcCCCEEEEC
Confidence 3899998888888888999988887641 23333 343311344566666 3799998774
No 164
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=34.00 E-value=2.9e+02 Score=27.26 Aligned_cols=93 Identities=9% Similarity=0.046 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcC-----CCccEEEEEeC--CCCCCC
Q 018528 41 SQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSH-----PSISQVLVADS--DKFAYP 98 (354)
Q Consensus 41 ~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~-----~GaD~V~~~~~--~~l~~~ 98 (354)
+.-+|+|=.+..|.+ ..++++|+. |.. + +....++-+. . +|+|+|+.+|- +++++|
T Consensus 79 d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~--~~~~~~~g~d~vitvDlH~~~~~~f 156 (326)
T PLN02297 79 AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILS--NIPISRGGPTSLVIFDIHALQERFY 156 (326)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHh--cccccccCCCEEEEEeCCChHHCCc
Confidence 446666554443333 247888763 421 0 1233444443 4 69999999973 233333
Q ss_pred CHH-------HHHHHHHHHHHhc--CccEEEeCCCCCccchHHHHH
Q 018528 99 IAE-------PWAKLVHMIQQRE--KYSHIISASGSFGKNVLPRAA 135 (354)
Q Consensus 99 ~~e-------~~a~aLa~li~~~--~P~lVL~g~T~~GrdlaprlA 135 (354)
-.. .-.+.+++.+++. ..+.++.+.+.-+...+..++
T Consensus 157 F~~~~~~l~l~a~~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a 202 (326)
T PLN02297 157 FGDNVLPCFESGIPLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF 202 (326)
T ss_pred cCCcccchhhccHHHHHHHHHhccccCCcEEEecCccHHHHHHHHc
Confidence 221 2246777777654 246666666666644444443
No 165
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=33.29 E-value=4.7e+02 Score=25.58 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCccEEEEEeC---C-CCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceee
Q 018528 70 FNEAVKHAASSHPSISQVLVADS---D-KFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITD 145 (354)
Q Consensus 70 ~~~~a~~l~~~~~GaD~V~~~~~---~-~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtd 145 (354)
...+.+.+. ...+-+||+.+- | +-..|....+.++|.+.+.+.-+|+||......-.++-.+-+..-..|+-.|
T Consensus 193 v~gI~eAI~--~s~a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g~~~~D~vlvn~~~~~~~~~~~y~~~~~~pv~~d 270 (310)
T TIGR01826 193 VPEIAEALR--ESKAPKVYVCNLMTQPGETDGFSLEDHVDALHRHLGKPFIDTVLVNTEKVPLEVLRNYFEEGSEQVEHD 270 (310)
T ss_pred chhHHHHHH--hCCCCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCEEEECCCCCChHHHHHHHhccCCccccc
Confidence 345555555 356788888753 3 4566777777777777765545788887766655555555554444444444
No 166
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.18 E-value=87 Score=27.32 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=36.7
Q ss_pred eCC-ceEEEecccchhhhhhcc------CCCcEEEEEcCCCCCCcccccceEEeec
Q 018528 290 VAP-ELYMAFGVSGAIQHLAGM------RDSKVIVAVNKDADAPIFQVADYGLVGD 338 (354)
Q Consensus 290 V~P-~lYia~GISGa~QH~~G~------~~s~~IVAIN~D~~ApIf~~aDygiVgD 338 (354)
++| ++.|++-.||....+..+ ++++ ||+|=..++.|+-+.||+.+.-.
T Consensus 99 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~-vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 99 GQPGDVLIGISTSGNSPNVLKALEAAKERGMK-TIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE-EEEEeCCCCCchhhhCCEEEEeC
Confidence 455 899999999988755432 2333 77888889999999999998743
No 167
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=32.77 E-value=1.9e+02 Score=21.41 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=37.1
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEE
Q 018528 61 MLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHII 120 (354)
Q Consensus 61 avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL 120 (354)
++++|.....-+++..+. ..|.+-.++...+.+-....+.....+.+.+++.+.++++
T Consensus 2 vvViGgG~ig~E~A~~l~--~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALA--ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHH--HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHH--HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 567887632235667776 4787654554556555555566677777778777766665
No 168
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.72 E-value=3.4e+02 Score=25.94 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=57.7
Q ss_pred cChHHHHHHHHHHhcCC--CCcEEEEEE--cCC-----------CCHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH-
Q 018528 39 IKSQSLSAVEAAKSLSD--DNSVSMLLA--GSG-----------PSFNEAVKHAASSHPSISQVLVADS--DKFAYPIA- 100 (354)
Q Consensus 39 l~~~slell~~A~~La~--~~~V~avv~--G~~-----------~~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~- 100 (354)
.++.-+|++-.+..+.+ ..++++|+. +.. -+.+-.++-+. .+| |+|+.+|- +++++|..
T Consensus 58 ~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~--~~~-d~vitvD~H~~~~~~~f~~ 134 (285)
T PRK00934 58 QDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIIS--AYY-DRIITINIHEPSILEFFPI 134 (285)
T ss_pred CcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHH--Hhc-CEEEEEcCChHHHcCcCCC
Confidence 34545666544433332 247777653 321 12333455454 467 99999972 23333221
Q ss_pred ----HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 101 ----EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 101 ----e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
..-.+.|++.+++.-.+.++++-..-|-.++..+|.+|+.++.
T Consensus 135 ~~~~l~a~~~la~~i~~~~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~ 181 (285)
T PRK00934 135 PFINLDAAPLIAEYIGDKLDDPLVLAPDKGALELAKEAAEILGCEYD 181 (285)
T ss_pred cEeEeecHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEE
Confidence 1224566666654223446667777778999999999998853
No 169
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.69 E-value=61 Score=30.44 Aligned_cols=96 Identities=23% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCCCCcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCcee-CCceEEEecccchhh----
Q 018528 231 DLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIV-APELYMAFGVSGAIQ---- 305 (354)
Q Consensus 231 ~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V-~P~lYia~GISGa~Q---- 305 (354)
-|.+|+.|...|.|.. ..+.+.|+..|. .+|- ++. +.+..+..-.....+ ..++.|++..||-..
T Consensus 124 ~i~~a~~I~i~G~G~s----~~~A~~~~~~l~-~~g~--~~~---~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~ 193 (278)
T PRK11557 124 MLRSARRIILTGIGAS----GLVAQNFAWKLM-KIGI--NAV---AERDMHALLATVQALSPDDLLLAISYSGERRELNL 193 (278)
T ss_pred HHhcCCeEEEEecChh----HHHHHHHHHHHh-hCCC--eEE---EcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence 5688999999999953 456667776654 1221 110 011111111111223 458999999999665
Q ss_pred --hhhccCCCcEEEEEcCCCCCCcccccceEEee
Q 018528 306 --HLAGMRDSKVIVAVNKDADAPIFQVADYGLVG 337 (354)
Q Consensus 306 --H~~G~~~s~~IVAIN~D~~ApIf~~aDygiVg 337 (354)
..+--++++ ||+|=..++.|+-+.||+-+..
T Consensus 194 ~~~~ak~~ga~-iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 194 AADEALRVGAK-VLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHHHHcCCC-EEEEcCCCCCchHHhCCEEEEe
Confidence 333445555 6778888999999999998863
No 170
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.42 E-value=63 Score=29.06 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=40.8
Q ss_pred CCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCc
Q 018528 82 PSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSP 142 (354)
Q Consensus 82 ~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~l 142 (354)
.+.+--+. .|.+. ..++.....+.+++++..++-+++=.|+.|.-+|.+||.+++.+.
T Consensus 27 ~~~~~~~~--~p~l~-~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~a 84 (187)
T PF05728_consen 27 HGPDIQYP--CPDLP-PFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPA 84 (187)
T ss_pred hCCCceEE--CCCCC-cCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCE
Confidence 45553333 34444 346666678888999887764555566778889999999999886
No 171
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.29 E-value=2e+02 Score=29.11 Aligned_cols=32 Identities=13% Similarity=-0.114 Sum_probs=23.4
Q ss_pred HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
-+.+++++.+||+++-++. .-.+|.++|+|+.
T Consensus 360 e~~~~i~~~~pDliig~~~------~~~~a~k~giP~~ 391 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK------EKYVFQKMGIPFR 391 (421)
T ss_pred HHHHHHHHhCCCEEEecCc------chhhhhhcCCCeE
Confidence 3557778889999994332 3457888999993
No 172
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=32.08 E-value=3.8e+02 Score=24.05 Aligned_cols=105 Identities=7% Similarity=0.054 Sum_probs=66.2
Q ss_pred EEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHH
Q 018528 30 VLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHM 109 (354)
Q Consensus 30 V~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~ 109 (354)
|++=+.+|..++..+.++....+.. -..++-+|.+-..+++.+.+. ..++|-| .+.. .-.+..+...+.+..
T Consensus 87 vv~~t~~gd~H~lG~~~v~~~l~~~---G~~vi~LG~~vp~e~~v~~~~--~~~pd~v-~lS~--~~~~~~~~~~~~i~~ 158 (197)
T TIGR02370 87 VVCGVAEGDVHDIGKNIVVTMLRAN---GFDVIDLGRDVPIDTVVEKVK--KEKPLML-TGSA--LMTTTMYGQKDINDK 158 (197)
T ss_pred EEEEeCCCchhHHHHHHHHHHHHhC---CcEEEECCCCCCHHHHHHHHH--HcCCCEE-EEcc--ccccCHHHHHHHHHH
Confidence 4555688999999999998887765 356777898744678888776 5789844 4443 233444444444444
Q ss_pred HHHhc-Ccc-EEEeCCCCCccchHHHHHHHcCCC-ceeee
Q 018528 110 IQQRE-KYS-HIISASGSFGKNVLPRAAALLDVS-PITDV 146 (354)
Q Consensus 110 li~~~-~P~-lVL~g~T~~GrdlaprlAarL~~~-lvtdv 146 (354)
+-++. .++ .|++|..... +.++.++|+- ...|+
T Consensus 159 l~~~~~~~~v~i~vGG~~~~----~~~~~~~gad~~~~da 194 (197)
T TIGR02370 159 LKEEGYRDSVKFMVGGAPVT----QDWADKIGADVYGENA 194 (197)
T ss_pred HHHcCCCCCCEEEEEChhcC----HHHHHHhCCcEEeCCh
Confidence 44332 222 5667776664 4567777764 44443
No 173
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=32.05 E-value=1.1e+02 Score=31.15 Aligned_cols=79 Identities=18% Similarity=0.357 Sum_probs=50.9
Q ss_pred cCCCcccccc-ccccceeEEEEEecCCccChHHHHHHHHHHhcCC-C-CcEEEEEEcCCCCHHHHHHHHhhcCCCcc--E
Q 018528 12 KRPRCFHRPS-ISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSD-D-NSVSMLLAGSGPSFNEAVKHAASSHPSIS--Q 86 (354)
Q Consensus 12 ~~~~~~~~~~-~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~-~-~~V~avv~G~~~~~~~~a~~l~~~~~GaD--~ 86 (354)
+=|+||.... ++..|+|.||=+...|.=- +++-.|-.|.++.. . .++..|+.|.+...-..++.+. .+|+. +
T Consensus 151 ~ap~cf~ie~~lr~~~~IPvFhDDqqGTai-v~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~--~~g~~~~~ 227 (432)
T COG0281 151 DAPRCFAIEERLRYRMNIPVFHDDQQGTAI-VTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLV--AAGVKEEN 227 (432)
T ss_pred ccchhhHHHHHHhhcCCCCcccccccHHHH-HHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHH--HhCCCccc
Confidence 4466765544 4556999999876655422 44544445666543 2 5788889998721123456666 58998 9
Q ss_pred EEEEeCC
Q 018528 87 VLVADSD 93 (354)
Q Consensus 87 V~~~~~~ 93 (354)
+|++|..
T Consensus 228 i~~~D~~ 234 (432)
T COG0281 228 IFVVDRK 234 (432)
T ss_pred EEEEecC
Confidence 9999864
No 174
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=31.88 E-value=4.6e+02 Score=26.49 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=58.6
Q ss_pred HhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC--CCCc
Q 018528 51 KSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS--GSFG 127 (354)
Q Consensus 51 ~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~--T~~G 127 (354)
..+.+ +++|-++.-|.= -+-.++-+. .||++ +..++.+.-+..+++.+.++|. +..++++|.+-+ |+.|
T Consensus 74 ~sl~~pgdkVLv~~nG~F--G~R~~~ia~--~~g~~-v~~~~~~wg~~v~p~~v~~~L~---~~~~~~~V~~vH~ETSTG 145 (383)
T COG0075 74 ASLVEPGDKVLVVVNGKF--GERFAEIAE--RYGAE-VVVLEVEWGEAVDPEEVEEALD---KDPDIKAVAVVHNETSTG 145 (383)
T ss_pred HhccCCCCeEEEEeCChH--HHHHHHHHH--HhCCc-eEEEeCCCCCCCCHHHHHHHHh---cCCCccEEEEEeccCccc
Confidence 34544 677777776643 133333332 58888 5566666678889988887776 445677788865 8888
Q ss_pred c--ch--HHHHHHHcCCCceeeeEEe
Q 018528 128 K--NV--LPRAAALLDVSPITDVIEI 149 (354)
Q Consensus 128 r--dl--aprlAarL~~~lvtdv~~l 149 (354)
- ++ -..++...|.=++-|++.-
T Consensus 146 vlnpl~~I~~~~k~~g~l~iVDaVsS 171 (383)
T COG0075 146 VLNPLKEIAKAAKEHGALLIVDAVSS 171 (383)
T ss_pred ccCcHHHHHHHHHHcCCEEEEEeccc
Confidence 4 22 2345555688888888763
No 175
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=31.82 E-value=3e+02 Score=24.19 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=50.4
Q ss_pred cChHHHHHHHHHHhcCC--CCcEEEEEEcCCC--------------CHHHHHHHHhhcCCCccEEEEEeC-CCCCCCCHH
Q 018528 39 IKSQSLSAVEAAKSLSD--DNSVSMLLAGSGP--------------SFNEAVKHAASSHPSISQVLVADS-DKFAYPIAE 101 (354)
Q Consensus 39 l~~~slell~~A~~La~--~~~V~avv~G~~~--------------~~~~~a~~l~~~~~GaD~V~~~~~-~~l~~~~~e 101 (354)
++.-=+.++..|+++++ +....++.+-+.+ ..++-.+-+. .+|+|.+++++- +.+....++
T Consensus 11 vH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~--~l~vd~v~~~~f~~~~~~~s~~ 88 (180)
T cd02064 11 VHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLE--SLGVDYLLVLPFDKEFASLSAE 88 (180)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHH--HcCCCEEEEeCCCHHHHcCCHH
Confidence 33445678888988875 2345555544321 1133333344 589999998753 234555565
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCC-Ccc
Q 018528 102 PWAKLVHMIQQREKYSHIISASGS-FGK 128 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~-~Gr 128 (354)
...+ .++.+.+|+.|++|... +|+
T Consensus 89 ~Fi~---~il~~~~~~~ivvG~Df~FG~ 113 (180)
T cd02064 89 EFVE---DLLVKLNAKHVVVGFDFRFGK 113 (180)
T ss_pred HHHH---HHHhhcCCeEEEEccCCCCCC
Confidence 5543 34444589999999976 453
No 176
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.71 E-value=1.9e+02 Score=27.90 Aligned_cols=103 Identities=10% Similarity=0.058 Sum_probs=52.3
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCC--CC----
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFA--YP---- 98 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~--~~---- 98 (354)
+|+|++.+-..+|.+.+.- +..+-++.. .++..+.+|.. ...++ +....+ +...+. ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~--l~~~L~~~~--~~~~~~~~~~~----~~~~~------~~~~~~--~~~~l~~~g~~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG--LIRALKARA--PNLEFVGVGGP----RMQAA------GCESLF--DMEELAVMGLVEVL 64 (380)
T ss_pred CceEEEEecCcCHHHHHHH--HHHHHHhcC--CCcEEEEEccH----HHHhC------CCcccc--CHHHhhhccHHHHH
Confidence 4789988877888887762 333333332 45666666643 11111 222211 111010 00
Q ss_pred ----CHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 99 ----IAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 99 ----~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
..-.....+.+++++.+||+|++-.+...--...+.|.+++.|++
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i 113 (380)
T PRK00025 65 PRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTI 113 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEE
Confidence 001223356677888999998774432211112244566788866
No 177
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=31.20 E-value=1e+02 Score=27.71 Aligned_cols=61 Identities=16% Similarity=0.038 Sum_probs=40.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCC--------H----HHHHHHHHHHHHhcCccEEEeC
Q 018528 60 SMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPI--------A----EPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 60 ~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~--------~----e~~a~aLa~li~~~~P~lVL~g 122 (354)
+++++|.+..-.+.++.|+ ..|+.++.++|++..+..+ . ..-++++++.+++.+|++-+-.
T Consensus 23 ~VlIiG~gglG~evak~La--~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 23 RILLIGLKGLGAEIAKNLV--LSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred cEEEEcCCHHHHHHHHHHH--HcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 4556786643456788887 6899999999987554211 1 1346677777777777765433
No 178
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=31.15 E-value=2.5e+02 Score=27.74 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=58.8
Q ss_pred ceeEEEEEecCCccChHHHHHHH-HHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH---
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVE-AAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA--- 100 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~-~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~--- 100 (354)
|+||+-+-|.. -..+.. ..++|.+ |.+|....= + .+. ..+|. ..||.+-..+-.+. .....
T Consensus 1 MkIwiDi~~p~------hvhfFk~~I~eL~~~GheV~it~R--~--~~~-~~~LL-~~yg~~y~~iG~~g--~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITHPA------HVHFFKNIIRELEKRGHEVLITAR--D--KDE-TEELL-DLYGIDYIVIGKHG--DSLYGKLL 66 (335)
T ss_pred CeEEEECCCch------HHHHHHHHHHHHHhCCCEEEEEEe--c--cch-HHHHH-HHcCCCeEEEcCCC--CCHHHHHH
Confidence 88999887653 122222 2455543 355544333 3 122 23333 35899987765543 11111
Q ss_pred --HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCcee
Q 018528 101 --EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 101 --e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvt 144 (354)
-....-|..++++.+||+++...+. -++|+|.-||.|.+.
T Consensus 67 ~~~~R~~~l~~~~~~~~pDv~is~~s~----~a~~va~~lgiP~I~ 108 (335)
T PF04007_consen 67 ESIERQYKLLKLIKKFKPDVAISFGSP----EAARVAFGLGIPSIV 108 (335)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEecCcH----HHHHHHHHhCCCeEE
Confidence 1223355666788899999965554 469999999999774
No 179
>PRK08462 biotin carboxylase; Validated
Probab=30.99 E-value=2e+02 Score=29.02 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHH--HHHHHHHHHhcCccEE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPW--AKLVHMIQQREKYSHI 119 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~--a~aLa~li~~~~P~lV 119 (354)
....++.+|++|+ -.+.+ +... .+.-+.. ..=+|+.|.+... ...+.| .+.|.+++++.++|.|
T Consensus 15 ~~~~~~~~~~~~G--~~~v~--~~~~--~d~~~~~----~~~ad~~~~~~~~----~~~~~y~~~~~l~~~~~~~~~D~i 80 (445)
T PRK08462 15 IALRAIRTIQEMG--KEAIA--IYST--ADKDALY----LKYADAKICIGGA----KSSESYLNIPAIISAAEIFEADAI 80 (445)
T ss_pred HHHHHHHHHHHcC--CCEEE--Eech--hhcCCch----hhhCCEEEEeCCC----chhcccCCHHHHHHHHHHcCCCEE
Confidence 4778899999997 45444 3333 1211111 1347888876422 223456 3678888888999988
Q ss_pred EeCCC
Q 018528 120 ISASG 124 (354)
Q Consensus 120 L~g~T 124 (354)
+-+..
T Consensus 81 ~pg~g 85 (445)
T PRK08462 81 FPGYG 85 (445)
T ss_pred EECCC
Confidence 87653
No 180
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=30.98 E-value=43 Score=31.17 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=40.7
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHhCC--------eecccHhhH------hcCCCCCCceeccCCceeCCceEEEec
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKLGA--------AVGATRAVV------DAGFVPNDLQVGQTGKIVAPELYMAFG 299 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~lga--------~vG~SRp~v------d~gw~p~~~qIGqtG~~V~P~lYia~G 299 (354)
.=||+|-|-|++..|+++-++|..+.- .+|.||.+. =++.+.+.-|+| .+.|+-|
T Consensus 56 ~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG~~G--------~VkISTG 124 (236)
T TIGR03581 56 NAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTPG--------LVNISTG 124 (236)
T ss_pred CceEEecCCCCHHHHHHHHHHHHHcCCccccccccchHHHHHHhCCccceEEEeecCCCccc--------eEEeccC
Confidence 339999999999999999999999874 489999876 134455544444 3556655
No 181
>PF07563 DUF1541: Protein of unknown function (DUF1541); InterPro: IPR011438 This domain is found in several hypothetical bacterial proteins as a tandem repeat.; PDB: 2KY9_A 4FIB_B.
Probab=30.92 E-value=25 Score=25.25 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.7
Q ss_pred hhhhccCCCcEEE
Q 018528 305 QHLAGMRDSKVIV 317 (354)
Q Consensus 305 QH~~G~~~s~~IV 317 (354)
.||.||++|.-.|
T Consensus 11 dHM~GM~gA~AtI 23 (53)
T PF07563_consen 11 DHMPGMKGATATI 23 (53)
T ss_dssp -SSTTGTT-EEEE
T ss_pred ccCCccCCCEEEE
Confidence 5999999998765
No 182
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=30.76 E-value=3.6e+02 Score=28.18 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred eeEEEEEecCCccChHHHHHHHHHH-hcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAK-SLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAK 105 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~-~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~ 105 (354)
.++|+.+.. ..+.+..... +|+ -++..+..-.....+...+.+. .++ +++.+.+|. .
T Consensus 295 rv~I~gd~~------~a~~l~~~L~~ElG--m~vv~~gt~~~~~~~~~~~~~~--~~~-~~~~i~~D~-----------~ 352 (519)
T PRK02910 295 RVFVFGDAT------HAVAAARILSDELG--FEVVGAGTYLREDARWVRAAAK--EYG-DEALITDDY-----------L 352 (519)
T ss_pred EEEEEcCcH------HHHHHHHHHHHhcC--CeEEEEecCCcchhHHHHHHHH--hcC-CCeEEecCH-----------H
Q ss_pred HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 106 LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
-+.+.+++.+||+|| |....-.+|.+||+|++
T Consensus 353 el~~~i~~~~Pdlii------G~~~er~~a~~lgiP~~ 384 (519)
T PRK02910 353 EVEDAIAEAAPELVL------GTQMERHSAKRLGIPCA 384 (519)
T ss_pred HHHHHHHhcCCCEEE------EcchHHHHHHHcCCCEE
No 183
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=30.68 E-value=42 Score=34.87 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCCCc--ccccceEEeecHHHHHHHHHhhccc
Q 018528 312 DSKVIVAVNKDADAPI--FQVADYGLVGDLFEVIPELLEKFPE 352 (354)
Q Consensus 312 ~s~~IVAIN~D~~ApI--f~~aDygiVgD~~~vlp~l~~~l~~ 352 (354)
++| +|.||.+|+=== |=.+|++|.||+..++-.|.++|..
T Consensus 302 d~K-fIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~ 343 (571)
T KOG1185|consen 302 DVK-FIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQD 343 (571)
T ss_pred Cce-EEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcC
Confidence 555 556888774322 5589999999999999999999976
No 184
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=30.67 E-value=1.1e+02 Score=26.60 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHhcCC--CCcEEEEEEcCCC--------------CHHHHHHHHhhcCCCccEEEEEeC-CCCCCCCHHH
Q 018528 40 KSQSLSAVEAAKSLSD--DNSVSMLLAGSGP--------------SFNEAVKHAASSHPSISQVLVADS-DKFAYPIAEP 102 (354)
Q Consensus 40 ~~~slell~~A~~La~--~~~V~avv~G~~~--------------~~~~~a~~l~~~~~GaD~V~~~~~-~~l~~~~~e~ 102 (354)
+.-=..++..|.++++ +.+..++.+-+.+ ..++-.+.+. .+|+|.+++++- +.+....++.
T Consensus 18 H~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~--~~Gvd~~~~~~F~~~~~~ls~~~ 95 (157)
T PF06574_consen 18 HLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLE--SLGVDYVIVIPFTEEFANLSPED 95 (157)
T ss_dssp -HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHH--HTTESEEEEE-CCCHHCCS-HHH
T ss_pred cHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHH--HcCCCEEEEecchHHHHcCCHHH
Confidence 3344567777777764 3566667775431 1233344454 589999999974 4577777777
Q ss_pred HHHHHHHHHH-hcCccEEEeCCCC-Ccc------chHHHHHHHcC
Q 018528 103 WAKLVHMIQQ-REKYSHIISASGS-FGK------NVLPRAAALLD 139 (354)
Q Consensus 103 ~a~aLa~li~-~~~P~lVL~g~T~-~Gr------dlaprlAarL~ 139 (354)
+. ..++. +.+...|++|.+. +|+ +....++.++|
T Consensus 96 Fi---~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g 137 (157)
T PF06574_consen 96 FI---EKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYG 137 (157)
T ss_dssp HH---HHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-
T ss_pred HH---HHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCc
Confidence 74 44444 6789999999865 453 44444444444
No 185
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=30.03 E-value=53 Score=32.40 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCCcccccceEEeecHHH
Q 018528 315 VIVAVNKDADAPIFQVADYGLVGDLFE 341 (354)
Q Consensus 315 ~IVAIN~D~~ApIf~~aDygiVgD~~~ 341 (354)
.++.++.+|++|-+++||.-++.|..+
T Consensus 37 ~v~~~~~~~~~~~~~~ad~~~~~~~~d 63 (395)
T PRK09288 37 EVIAVDRYANAPAMQVAHRSHVIDMLD 63 (395)
T ss_pred EEEEEeCCCCCchHHhhhheEECCCCC
Confidence 577899999999999999888776544
No 186
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=29.70 E-value=6.8e+02 Score=26.26 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--cc--EEEeCCCCCccchHHHHHHHcC
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK--YS--HIISASGSFGKNVLPRAAALLD 139 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~--P~--lVL~g~T~~GrdlaprlAarL~ 139 (354)
++++++. .+|+|++.+.|. .....|+.+.+.+..+.+... ++ +=+=.+...|..+|--+|+...
T Consensus 243 ~~~~~a~--~~Gad~I~l~DT--vG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~a 310 (503)
T PLN03228 243 KILGEAI--KAGATSVGIADT--VGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICA 310 (503)
T ss_pred HHHHHHH--hcCCCEEEEecC--CCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHh
Confidence 3455555 489999988877 466788999888888766542 12 3344667888888888877643
No 187
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=29.69 E-value=3.5e+02 Score=26.45 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=47.6
Q ss_pred HHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCcc-EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeC
Q 018528 45 SAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSIS-QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 45 ell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD-~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g 122 (354)
.+++++.+|.+ ..++..+++|.++. .+..+++. ...|.+ +|..... ...+.....++ ..|+.+++
T Consensus 210 ~li~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~-~~~~l~~~v~~~G~-----~~~~~~~~~l~------~ad~~v~p 276 (398)
T cd03796 210 LLVGIIPEICKKHPNVRFIIGGDGPK-RILLEEMR-EKYNLQDRVELLGA-----VPHERVRDVLV------QGHIFLNT 276 (398)
T ss_pred HHHHHHHHHHhhCCCEEEEEEeCCch-HHHHHHHH-HHhCCCCeEEEeCC-----CCHHHHHHHHH------hCCEEEeC
Confidence 45666666643 35678888886532 22233333 235654 3544321 12233333333 33788888
Q ss_pred CCCCccchHHHHHHHcCCCcee
Q 018528 123 SGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 123 ~T~~GrdlaprlAarL~~~lvt 144 (354)
+...|--+...=|...|.|+++
T Consensus 277 S~~E~~g~~~~EAma~G~PVI~ 298 (398)
T cd03796 277 SLTEAFCIAIVEAASCGLLVVS 298 (398)
T ss_pred ChhhccCHHHHHHHHcCCCEEE
Confidence 7666655666777777888753
No 188
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.43 E-value=4.9e+02 Score=24.54 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEE---cCC-CCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCcc
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLA---GSG-PSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYS 117 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~---G~~-~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~ 117 (354)
..+++++.|++.+ -+|.+-+. +.+ +...+.++++. .+|+|.+++.|. .....|+...+.+..+-+..+++
T Consensus 110 ~~~~~i~~ak~~G--~~v~~~~~~a~~~~~~~~~~~~~~~~--~~g~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~ 183 (266)
T cd07944 110 EALPLIKAIKEKG--YEVFFNLMAISGYSDEELLELLELVN--EIKPDVFYIVDS--FGSMYPEDIKRIISLLRSNLDKD 183 (266)
T ss_pred HHHHHHHHHHHCC--CeEEEEEEeecCCCHHHHHHHHHHHH--hCCCCEEEEecC--CCCCCHHHHHHHHHHHHHhcCCC
Confidence 3556666677665 44443322 222 11334556665 479999998877 56678899988888887666643
Q ss_pred --EEEeCCCCCccchHHHHHHH
Q 018528 118 --HIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 118 --lVL~g~T~~GrdlaprlAar 137 (354)
+=+=.+...|-.++--+++.
T Consensus 184 ~~i~~H~Hn~~Gla~AN~laA~ 205 (266)
T cd07944 184 IKLGFHAHNNLQLALANTLEAI 205 (266)
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 33445677787888777664
No 189
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=29.41 E-value=4.7e+02 Score=24.36 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=51.4
Q ss_pred HHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCC
Q 018528 46 AVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASG 124 (354)
Q Consensus 46 ll~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T 124 (354)
+...++.|.+ +-+|+.+..... .+...+... ..|.. ++... ........+...+..++++.+||+|.+...
T Consensus 18 ~~~l~~~L~~~~~~v~~i~~~~~--~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~ 89 (358)
T cd03812 18 IMNYYRNLDRSKIQFDFLVTSKE--EGDYDDEIE--KLGGK-IYYIP---ARKKNPLKYFKKLYKLIKKNKYDIVHVHGS 89 (358)
T ss_pred HHHHHHhcCccceEEEEEEeCCC--CcchHHHHH--HcCCe-EEEec---CCCccHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 3445666654 567777766544 122233333 24554 33322 223445567777888888999999998766
Q ss_pred CCccchHHHHHHHcCCCc
Q 018528 125 SFGKNVLPRAAALLDVSP 142 (354)
Q Consensus 125 ~~GrdlaprlAarL~~~l 142 (354)
. .-.+...++.+++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~ 106 (358)
T cd03812 90 S-ASGFILLAAKKAGVKV 106 (358)
T ss_pred c-hhHHHHHHHhhCCCCe
Confidence 5 3445556666666664
No 190
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=29.36 E-value=1.7e+02 Score=27.32 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH------------HHHHHHHHHHHhcCccEEEeCC
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAE------------PWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e------------~~a~aLa~li~~~~P~lVL~g~ 123 (354)
-.++++|.+..-..+++.|+ ..|+.++.++|++..+..+-- .-+.++++.+++.+|++-+-..
T Consensus 25 ~~VlvvG~GglGs~va~~La--~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLA--AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred CcEEEECcCHHHHHHHHHHH--HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 35667776532345677777 589999999998776542211 2345666777777776555443
No 191
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.22 E-value=4.2e+02 Score=23.69 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=60.6
Q ss_pred EEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHH
Q 018528 30 VLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHM 109 (354)
Q Consensus 30 V~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~ 109 (354)
|++=..+|..++.-+.++....+.. -..++-+|.+-..+++.+.+. ...+|-| .+..- .....+. ..-+.+
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~~---G~~vi~lG~~~p~~~l~~~~~--~~~~d~v-~lS~~--~~~~~~~-~~~~i~ 155 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEAN---GFEVIDLGRDVPPEEFVEAVK--EHKPDIL-GLSAL--MTTTMGG-MKEVIE 155 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHHC---CCEEEECCCCCCHHHHHHHHH--HcCCCEE-EEecc--ccccHHH-HHHHHH
Confidence 4445678899999999998776654 245567887633677887776 4788844 44431 2223333 344445
Q ss_pred HHHhcCc--cE-EEeCCCCCccchHHHHHHHcCCC
Q 018528 110 IQQREKY--SH-IISASGSFGKNVLPRAAALLDVS 141 (354)
Q Consensus 110 li~~~~P--~l-VL~g~T~~GrdlaprlAarL~~~ 141 (354)
.+++..| ++ |++|......+ ++.++|+-
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~----~~~~~GaD 186 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQE----FADEIGAD 186 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHH----HHHHcCCc
Confidence 5566565 53 66776666554 56666653
No 192
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=28.96 E-value=6.4e+02 Score=26.91 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=62.2
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEE--cC---C-CCHHHHHHHHhhcCCCccEEEEEeCCCCCCCC
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLA--GS---G-PSFNEAVKHAASSHPSISQVLVADSDKFAYPI 99 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~--G~---~-~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~ 99 (354)
++++-+....+.. +...+.++.|++.+ ..+.+-+. +. + +-..+.++++. .+|+|.+++.|.- ....
T Consensus 105 vd~irif~~lnd~--~n~~~~i~~ak~~G--~~v~~~i~~t~~p~~~~~~~~~~~~~~~--~~Gad~I~i~Dt~--G~~~ 176 (582)
T TIGR01108 105 MDVFRIFDALNDP--RNLQAAIQAAKKHG--AHAQGTISYTTSPVHTLETYLDLAEELL--EMGVDSICIKDMA--GILT 176 (582)
T ss_pred CCEEEEEEecCcH--HHHHHHHHHHHHcC--CEEEEEEEeccCCCCCHHHHHHHHHHHH--HcCCCEEEECCCC--CCcC
Confidence 4444444433321 33455566666665 44443321 11 1 01234567776 5899998888764 4567
Q ss_pred HHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH
Q 018528 100 AEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 100 ~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar 137 (354)
|+...+.+..+-+..+-.+=+=.+...|..++-.+|+.
T Consensus 177 P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv 214 (582)
T TIGR01108 177 PKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAI 214 (582)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHH
Confidence 88888888887666543444556778888888877654
No 193
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=28.87 E-value=1.6e+02 Score=23.56 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeC
Q 018528 43 SLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 43 slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g 122 (354)
-+-++..|+.++ .+|.+ +..+ +.-.+.+. .+|++.++..+++. +.+.+.++.....+|+++=.
T Consensus 3 G~~a~q~ak~~G--~~vi~--~~~~---~~k~~~~~--~~Ga~~~~~~~~~~--------~~~~i~~~~~~~~~d~vid~ 65 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIA--TDRS---EEKLELAK--ELGADHVIDYSDDD--------FVEQIRELTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHTT--SEEEE--EESS---HHHHHHHH--HTTESEEEETTTSS--------HHHHHHHHTTTSSEEEEEES
T ss_pred HHHHHHHHHHcC--CEEEE--EECC---HHHHHHHH--hhcccccccccccc--------cccccccccccccceEEEEe
Confidence 344566676665 44443 4333 22222333 47999886644332 55666666665678888744
No 194
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=28.68 E-value=1.9e+02 Score=27.02 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH------------HHHHHHHHHHHhcCccE
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAE------------PWAKLVHMIQQREKYSH 118 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e------------~~a~aLa~li~~~~P~l 118 (354)
-.++++|.+..-..+++.|+ ..|+.++.++|++..+..+-. .-++++++.+++.+|++
T Consensus 33 ~~VliiG~GglGs~va~~La--~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v 102 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLA--AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHI 102 (245)
T ss_pred CeEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCC
Confidence 45667776532356778887 589999999998766544321 23445556666555544
No 195
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=28.52 E-value=2.9e+02 Score=24.23 Aligned_cols=45 Identities=4% Similarity=-0.017 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 98 PIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 98 ~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
.+|+.+..+...+.+..++|.|+ +-...|--+|..+|..||.|++
T Consensus 39 ~~p~~~~~l~~~l~~~~~~d~Vv-g~~~gGi~~A~~~a~~l~~p~~ 83 (170)
T PRK13811 39 THPALLKEIAAEVAKRYDFDVVA-GVAVGGVPLAVAVSLAAGKPYA 83 (170)
T ss_pred cCHHHHHHHHHHHHhhCCCCEEE-ecCcCcHHHHHHHHHHHCCCEE
Confidence 34565655555555556788764 5556688999999999998864
No 196
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.25 E-value=5.3e+02 Score=24.58 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCcc--EEEeCCCCCccchHHHHHHHc
Q 018528 71 NEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYS--HIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 71 ~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~--lVL~g~T~~GrdlaprlAarL 138 (354)
.++++++. .+|+|++.+.|. .....|+...+.+..+.+.. |+ +=+=.+...|.-+|--+|+..
T Consensus 150 ~~~~~~~~--~~G~~~i~l~DT--~G~~~P~~v~~l~~~l~~~~-~~~~i~~H~Hnd~Gla~AN~laA~~ 214 (280)
T cd07945 150 FQLVDFLS--DLPIKRIMLPDT--LGILSPFETYTYISDMVKRY-PNLHFDFHAHNDYDLAVANVLAAVK 214 (280)
T ss_pred HHHHHHHH--HcCCCEEEecCC--CCCCCHHHHHHHHHHHHhhC-CCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34566666 589999999887 45678888888888776554 44 344466788888888887643
No 197
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=28.07 E-value=3e+02 Score=27.88 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHH--HHHHHHHHhcCccEE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWA--KLVHMIQQREKYSHI 119 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a--~aLa~li~~~~P~lV 119 (354)
....++.+|++|+ - ..+++..+ .+.-+.. ..-+|+.|.+... .+.+.|. +.|.++++++++|.|
T Consensus 13 ~~~~~~~aa~~lG--~--~vv~~~~~--~d~~a~~----~~~aD~~~~~~~~----~~~~~y~d~~~l~~~a~~~~id~I 78 (449)
T TIGR00514 13 IALRILRACKELG--I--KTVAVHST--ADRDALH----VLLADEAVCIGPA----PSAKSYLNIPNIISAAEITGADAI 78 (449)
T ss_pred HHHHHHHHHHHcC--C--eEEEEECh--hhhcccc----cccCCEEEEcCCC----CchhchhCHHHHHHHHHHhCCCEE
Confidence 4788899999997 4 44445443 1111111 2347887776321 2234453 467888888999999
Q ss_pred EeCCCCCccc-hHHHHHHHcCCCc
Q 018528 120 ISASGSFGKN-VLPRAAALLDVSP 142 (354)
Q Consensus 120 L~g~T~~Grd-laprlAarL~~~l 142 (354)
+-+.+..+.+ ...+++.++|.++
T Consensus 79 ~pg~g~~se~~~~a~~~e~~Gi~~ 102 (449)
T TIGR00514 79 HPGYGFLSENANFAEQCERSGFTF 102 (449)
T ss_pred EeCCCccccCHHHHHHHHHCCCcE
Confidence 8765322221 1234555555543
No 198
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=28.00 E-value=55 Score=32.01 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=24.1
Q ss_pred cEEEeCCCCCcc-chHHHHHHHcCCCce
Q 018528 117 SHIISASGSFGK-NVLPRAAALLDVSPI 143 (354)
Q Consensus 117 ~lVL~g~T~~Gr-dlaprlAarL~~~lv 143 (354)
-++++|.|..|| +++=.||.++|..++
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 478889999998 999999999999776
No 199
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.99 E-value=7e+02 Score=25.87 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCCcEEEEE---EcCCCC---HHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc
Q 018528 43 SLSAVEAAKSLSDDNSVSMLL---AGSGPS---FNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY 116 (354)
Q Consensus 43 slell~~A~~La~~~~V~avv---~G~~~~---~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P 116 (354)
....++.|++.+ ..+.+.+ +++... ..+.++++. .+|+|.+++.|.- ....|+...+.+..+-++.+-
T Consensus 124 ~~~~i~~ak~~G--~~v~~~i~~t~~p~~t~e~~~~~a~~l~--~~Gad~I~i~Dt~--G~l~P~~v~~Lv~~lk~~~~v 197 (467)
T PRK14041 124 LEKSIEVAKKHG--AHVQGAISYTVSPVHTLEYYLEFARELV--DMGVDSICIKDMA--GLLTPKRAYELVKALKKKFGV 197 (467)
T ss_pred HHHHHHHHHHCC--CEEEEEEEeccCCCCCHHHHHHHHHHHH--HcCCCEEEECCcc--CCcCHHHHHHHHHHHHHhcCC
Confidence 344556666655 4444322 233111 234667776 5899999888764 456788888888877666553
Q ss_pred cEEEeCCCCCccchHHHHHHH
Q 018528 117 SHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 117 ~lVL~g~T~~GrdlaprlAar 137 (354)
.+=+=.+...|..++-.+|+.
T Consensus 198 pI~~H~Hnt~GlA~AN~laAi 218 (467)
T PRK14041 198 PVEVHSHCTTGLASLAYLAAV 218 (467)
T ss_pred ceEEEecCCCCcHHHHHHHHH
Confidence 444556788899999988763
No 200
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=27.42 E-value=5.3e+02 Score=24.27 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=54.8
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCC---CCCC-H
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKF---AYPI-A 100 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l---~~~~-~ 100 (354)
|+|+++.-..-|.......++ |+.|.+ +.+|+++..... ... ... ..+. .++.++-+.+ .... .
T Consensus 1 mki~~~~~p~~gG~~~~~~~l---a~~L~~~G~~v~v~~~~~~--~~~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~ 69 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATEL---GKALARRGHEVHFITSSRP--FRL-DEY----SPNI-FFHEVEVPQYPLFQYPPYD 69 (371)
T ss_pred CceeEEEEeCCCCccchHHHH---HHHHHhcCCceEEEecCCC--cch-hhh----ccCe-EEEEecccccchhhcchhH
Confidence 567777655566666666654 444444 367887765433 111 111 1122 1222221111 1110 1
Q ss_pred HHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH----cCCCceeeeE
Q 018528 101 EPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL----LDVSPITDVI 147 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar----L~~~lvtdv~ 147 (354)
......+.+++++.+||+|.+- +...--+...++.+ .+.+++.+.-
T Consensus 70 ~~~~~~l~~~i~~~~~divh~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~h 119 (371)
T cd04962 70 LALASKIAEVAKRYKLDLLHVH-YAVPHAVAAYLAREILGKKDLPVVTTLH 119 (371)
T ss_pred HHHHHHHHHHHhcCCccEEeec-ccCCccHHHHHHHHhcCcCCCcEEEEEc
Confidence 1234677788889999988874 33333333444433 3678776543
No 201
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=27.03 E-value=1.2e+02 Score=25.47 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCccEEEeC-----CCCCcc------chHHHHHHHcCCC
Q 018528 102 PWAKLVHMIQQREKYSHIISA-----SGSFGK------NVLPRAAALLDVS 141 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g-----~T~~Gr------dlaprlAarL~~~ 141 (354)
.....|.+++++++|+.|++| ....+. +++-+|..+++.|
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~ 85 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVP 85 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCC
Confidence 445889999999999999999 444443 7777887777655
No 202
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=26.91 E-value=2.7e+02 Score=26.46 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=60.7
Q ss_pred ecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCC--CCCCCCHHHHHHHHHHHH
Q 018528 34 HENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSD--KFAYPIAEPWAKLVHMIQ 111 (354)
Q Consensus 34 ~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~--~l~~~~~e~~a~aLa~li 111 (354)
+.+..++--.+.+|..|.+ +.++|++|..-.+. ......+. ....=++..++.. ...+..++..--+|.++.
T Consensus 6 TNDDGi~a~Gi~aL~~al~--~~~dV~VVAP~~~q--Sg~s~slT--l~~Plr~~~~~~~~~av~GTPaDCV~lal~~l~ 79 (252)
T COG0496 6 TNDDGIHAPGIRALARALR--EGADVTVVAPDREQ--SGASHSLT--LHEPLRVRQVDNGAYAVNGTPADCVILGLNELL 79 (252)
T ss_pred ecCCccCCHHHHHHHHHHh--hCCCEEEEccCCCC--cccccccc--cccCceeeEeccceEEecCChHHHHHHHHHHhc
Confidence 3444566677777777766 33678876653331 11111111 1222222222221 134556777778899999
Q ss_pred HhcCccEEEeCCCC---Cc-------cchHHHHHHHcCCCceee
Q 018528 112 QREKYSHIISASGS---FG-------KNVLPRAAALLDVSPITD 145 (354)
Q Consensus 112 ~~~~P~lVL~g~T~---~G-------rdlaprlAarL~~~lvtd 145 (354)
++..||+||-|=.. .| --=|++=|+.+|.|-++=
T Consensus 80 ~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~ 123 (252)
T COG0496 80 KEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAI 123 (252)
T ss_pred cCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceee
Confidence 88889999987422 22 233556678888887753
No 203
>PRK00211 sulfur relay protein TusC; Validated
Probab=26.89 E-value=3.2e+02 Score=22.53 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=37.1
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC-CCcEEEEEEcCC---------C------CHHHHHHHHhhcCCCccEEEE
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD-DNSVSMLLAGSG---------P------SFNEAVKHAASSHPSISQVLV 89 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~-~~~V~avv~G~~---------~------~~~~~a~~l~~~~~GaD~V~~ 89 (354)
++++++.-+.+- =+..+.|.|..|..++. +.+|+++.+|.. + .....-+.+. .||+++||+
T Consensus 2 ~ki~~i~~~~Py-g~~~~~eaLd~ala~~a~~~~v~vff~~DgV~~l~~~q~p~~i~~kn~~~~~~~L~--~ydi~~v~v 78 (119)
T PRK00211 2 KRIAFVFRQAPH-GTASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQQPDAILARDYIATFKLLP--LYDIEQCYL 78 (119)
T ss_pred ceEEEEecCCCC-CCHHHHHHHHHHHHHhcccCCeeEEEEhhhHHHHhcCCCcccccccCHHHHHHHHH--hCCCCeEEE
Confidence 346666644322 34467888877766654 468999888754 0 0222233444 577777777
Q ss_pred Ee
Q 018528 90 AD 91 (354)
Q Consensus 90 ~~ 91 (354)
+.
T Consensus 79 c~ 80 (119)
T PRK00211 79 CA 80 (119)
T ss_pred EH
Confidence 74
No 204
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.84 E-value=6.3e+02 Score=24.99 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHc
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL 138 (354)
+.++++. .+|+|++++.|. .....|+...+.+..+.+..+-.+=+=.+...|.-+|--+++..
T Consensus 145 ~~~~~~~--~~g~~~i~l~DT--~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~ 207 (363)
T TIGR02090 145 KVFKRAE--EAGADRINIADT--VGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVK 207 (363)
T ss_pred HHHHHHH--hCCCCEEEEeCC--CCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHH
Confidence 3455665 589999999876 46678888888888876654422334456778888888887754
No 205
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=26.79 E-value=78 Score=28.55 Aligned_cols=41 Identities=20% Similarity=0.073 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 102 PWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
..+..+++.++..++|.|+ +-...|==+|+.+|.+|+.|++
T Consensus 37 ~i~~~la~~~~~~~~D~Iv-g~e~~GiplA~~lA~~Lg~p~v 77 (189)
T PRK09219 37 EIGKEFARRFKDEGITKIL-TIEASGIAPAVMAALALGVPVV 77 (189)
T ss_pred HHHHHHHHHhccCCCCEEE-EEccccHHHHHHHHHHHCCCEE
Confidence 3445555555556788876 5566788999999999999986
No 206
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=26.66 E-value=3.8e+02 Score=27.10 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeC
Q 018528 43 SLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 43 slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g 122 (354)
.++.+...++.. .+-.++.|.-. .+.+.+ +. ..|+|-+.+. ..-+...++...+..+.+.+++..|.-|=--
T Consensus 150 ~~~~l~~l~~~~---~iPI~a~GGI~-~~n~~~-~l--~aGAdgv~vG-saI~~~~d~~~~~~~l~~~i~~~~~~~~~~~ 221 (430)
T PRK07028 150 PLELLKEVSEEV---SIPIAVAGGLD-AETAAK-AV--AAGADIVIVG-GNIIKSADVTEAARKIREAIDSGKPVKIDKF 221 (430)
T ss_pred hHHHHHHHHhhC---CCcEEEECCCC-HHHHHH-HH--HcCCCEEEEC-hHHcCCCCHHHHHHHHHHHHhccCCcccccc
Confidence 445555554422 23344555431 455444 44 3799976654 4456677888888888888887665444322
Q ss_pred CCCCccchHHHHHHHcCCCceeeeEEeeCCcEEEEEccCc
Q 018528 123 SGSFGKNVLPRAAALLDVSPITDVIEISGSSQFVRPIYAG 162 (354)
Q Consensus 123 ~T~~GrdlaprlAarL~~~lvtdv~~l~~~~~~~R~~ygG 162 (354)
......++..+++ +++++.++|+..-.+-....||.+.|
T Consensus 222 ~~~~~~~~~~~l~-~~~t~~i~d~l~~~g~~~~i~p~~~~ 260 (430)
T PRK07028 222 KKSLDEEIREIFM-QVSTPNISDAMHRKGAMKGIKPLVRG 260 (430)
T ss_pred ccCCCHHHHHHhc-CCCCCcHHhhhhccCCCceeeecCCC
Confidence 3444557777777 88999999997533222345777665
No 207
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=26.66 E-value=60 Score=26.07 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=28.1
Q ss_pred eeCCceEEEecccchhh--------------hhhccCCCcEEEEEcCCCCC
Q 018528 289 IVAPELYMAFGVSGAIQ--------------HLAGMRDSKVIVAVNKDADA 325 (354)
Q Consensus 289 ~V~P~lYia~GISGa~Q--------------H~~G~~~s~~IVAIN~D~~A 325 (354)
.=+|++|+.+|.|.... -++|+ ++++|++++.+.-+
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~l-dvEvV~a~~~~~~~ 87 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGL-DVEVVVALPAAQRA 87 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTS-SSEEEEEETTCCCG
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhC-CcEEEEECCHHHHH
Confidence 44789999999987653 36778 89999999976443
No 208
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=26.61 E-value=65 Score=31.83 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=60.4
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCC--CCcEEEEEEcCCCCHHH----HHHHHhhcCCCccEEEE--EeCCCCCC
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSD--DNSVSMLLAGSGPSFNE----AVKHAASSHPSISQVLV--ADSDKFAY 97 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~--~~~V~avv~G~~~~~~~----~a~~l~~~~~GaD~V~~--~~~~~l~~ 97 (354)
|+|+++.-++..-+.= ..+ .++|.+ +-++..|+-|.. .+. ...++.....+.+.-+. +..+. ..
T Consensus 1 ~ki~~v~GtRpe~ikl--apv---~~~l~~~~~~~~~lv~tGqH--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 72 (365)
T TIGR03568 1 KKICVVTGTRADYGLL--RPL---LKALQDDPDLELQLIVTGMH--LSPEYGNTVNEIEKDGFDIDEKIEILLDSDS-NA 72 (365)
T ss_pred CeEEEEEecChhHHHH--HHH---HHHHhcCCCCcEEEEEeCCC--CChhhccHHHHHHHcCCCCCCccccccCCCC-CC
Confidence 5788888876532210 011 222333 347788888876 221 12222200123321111 22110 11
Q ss_pred CCHHHHHH---HHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 98 PIAEPWAK---LVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 98 ~~~e~~a~---aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
...+..+. .+.+++++.+||+||.-.+.+----++..|..+++|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~ 121 (365)
T TIGR03568 73 GMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIA 121 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEE
Confidence 22444444 45566788899999988777766678899999999987
No 209
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=26.24 E-value=2.6e+02 Score=26.98 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCC--CCcEEEEEEcCCC-------------CHHHHHHHHhhcCCCccEEEEEe-CCCCCCCCHHHHHHHH
Q 018528 44 LSAVEAAKSLSD--DNSVSMLLAGSGP-------------SFNEAVKHAASSHPSISQVLVAD-SDKFAYPIAEPWAKLV 107 (354)
Q Consensus 44 lell~~A~~La~--~~~V~avv~G~~~-------------~~~~~a~~l~~~~~GaD~V~~~~-~~~l~~~~~e~~a~aL 107 (354)
..++..++++|+ +.+..++.+-+.+ ..++-.+.+. .+|+|.+++++ ++.+....++.+.+-+
T Consensus 15 q~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~--~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~ 92 (288)
T TIGR00083 15 QALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQ--IKGVEQLLVVVFDEEFANLSALQFIDQL 92 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHH--HcCCCEEEEeCCCHHHHcCCHHHHHHHH
Confidence 456666666654 2445555554321 0133333444 58999999998 4568888888886532
Q ss_pred HHHHHhcCccEEEeCCCC-Ccc------chHHHHHHHcCC
Q 018528 108 HMIQQREKYSHIISASGS-FGK------NVLPRAAALLDV 140 (354)
Q Consensus 108 a~li~~~~P~lVL~g~T~-~Gr------dlaprlAarL~~ 140 (354)
+.++.++..|++|.+. +|+ +..-+++..++.
T Consensus 93 --l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~ 130 (288)
T TIGR00083 93 --IVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIF 130 (288)
T ss_pred --HHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCc
Confidence 1245789999999866 343 666667666664
No 210
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=25.97 E-value=1.5e+02 Score=27.47 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=39.8
Q ss_pred CCCCcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccC
Q 018528 232 LGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMR 311 (354)
Q Consensus 232 L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~ 311 (354)
+..-+++| ..-|||.+.---.+++|.+.+| |+..|-+|.+|++|. +++
T Consensus 53 ~~g~~v~v-~~~GiG~~~Aai~~~eLi~~~g-----------------------------~~~iI~~GtaG~l~~--~l~ 100 (233)
T PRK13374 53 YKGKKVSV-MGHGMGIPSMVIYVHELIATFG-----------------------------VKNIIRVGSCGATQD--DVK 100 (233)
T ss_pred ECCEEEEE-EeCCCCHhHHHHHHHHHHHHcC-----------------------------CcEEEEEeccccCCC--CCC
Confidence 34444444 5567776644446788887776 899999999999995 677
Q ss_pred CCcEEEEE
Q 018528 312 DSKVIVAV 319 (354)
Q Consensus 312 ~s~~IVAI 319 (354)
--++||+=
T Consensus 101 ~GDvVI~~ 108 (233)
T PRK13374 101 LMDVIIAQ 108 (233)
T ss_pred CCCEEEEe
Confidence 67777754
No 211
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=25.87 E-value=79 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=31.5
Q ss_pred eccCCceeCC--ceEEEecccchhhhhhccCCCcEEEEEcC
Q 018528 283 VGQTGKIVAP--ELYMAFGVSGAIQHLAGMRDSKVIVAVNK 321 (354)
Q Consensus 283 IGqtG~~V~P--~lYia~GISGa~QH~~G~~~s~~IVAIN~ 321 (354)
+|.+=....+ .+||.-=..|++-.-+|++.-|.|++||.
T Consensus 3 lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing 43 (82)
T PF13180_consen 3 LGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAING 43 (82)
T ss_dssp -SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETT
T ss_pred ECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECC
Confidence 4555555555 89999989999999999999999999997
No 212
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=25.70 E-value=5.7e+02 Score=24.09 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCcc--EEEeCCCCCccchHHHHHHHc
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYS--HIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~--lVL~g~T~~GrdlaprlAarL 138 (354)
+.++++. .+|+|++++.|. .....|+.....+..+.++. |+ +=+=.+...|--++--+|+..
T Consensus 155 ~~~~~~~--~~g~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~-~~~~l~~H~Hnd~Gla~An~laA~~ 218 (273)
T cd07941 155 ATLKAAA--EAGADWLVLCDT--NGGTLPHEIAEIVKEVRERL-PGVPLGIHAHNDSGLAVANSLAAVE 218 (273)
T ss_pred HHHHHHH--hCCCCEEEEecC--CCCCCHHHHHHHHHHHHHhC-CCCeeEEEecCCCCcHHHHHHHHHH
Confidence 3455656 489999998876 46678899888888776655 44 333456778888888887754
No 213
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=25.66 E-value=1.2e+02 Score=24.26 Aligned_cols=59 Identities=27% Similarity=0.358 Sum_probs=37.6
Q ss_pred hhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcEEEEEcC
Q 018528 248 AENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNK 321 (354)
Q Consensus 248 ~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~IVAIN~ 321 (354)
.+.++-+++||+.+|.++- ..+=|.-+...|+-||+-|===.+..+.=..++++|| +|.
T Consensus 7 ~~~l~El~~L~~t~g~~vv--------------~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vv-fd~ 65 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVV--------------GTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVV-FDN 65 (95)
T ss_pred HHHHHHHHHHHHHCCCeEE--------------EEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEE-ECC
Confidence 3566777888888877763 2344777889999999855333333444345666665 443
No 214
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=25.59 E-value=2.3e+02 Score=25.89 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH------------HHHHHHHHHHHHhcCccE
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA------------EPWAKLVHMIQQREKYSH 118 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~------------e~~a~aLa~li~~~~P~l 118 (354)
-.++++|.+..-.++++.|+ ..|+.++.++|++..+..+- ..-++++++.+++.+|++
T Consensus 22 ~~VlivG~GglGs~va~~La--~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~ 91 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLA--AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDV 91 (228)
T ss_pred CcEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCC
Confidence 35667776642356778887 58999999998765432221 234556666676666653
No 215
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.31 E-value=96 Score=27.98 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=31.9
Q ss_pred CCHHHH---HHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 98 PIAEPW---AKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 98 ~~~e~~---a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
++|+.. +..+++.+++.++|.|+ +..+.|=-+|..+|.+||.|++
T Consensus 30 ~~p~~l~~v~~~l~~~~~~~~~d~Vv-~~ea~Gi~la~~lA~~Lg~p~v 77 (191)
T TIGR01744 30 IDPKLMQEVGEEFARRFADDGITKIV-TIEASGIAPAIMTGLKLGVPVV 77 (191)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEE-EEccccHHHHHHHHHHHCCCEE
Confidence 355544 44555555555789885 5566777999999999998876
No 216
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=25.26 E-value=4.7e+02 Score=24.39 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=48.4
Q ss_pred HHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCcc-EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC
Q 018528 46 AVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSIS-QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 46 ll~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD-~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
++.+..+|.+ ...+..+++|..+..+.+.+.+. ..|.+ +|... .. .+ . +.++++ ..|++++|+
T Consensus 210 li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~--~~~~~~~v~~~-g~-~~-----~----~~~~~~--~adi~v~ps 274 (358)
T cd03812 210 LIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVK--ELGLEDKVIFL-GV-RN-----D----VPELLQ--AMDVFLFPS 274 (358)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHH--hcCCCCcEEEe-cc-cC-----C----HHHHHH--hcCEEEecc
Confidence 4555555543 35688888886532233333332 34544 44443 22 11 1 233443 457888888
Q ss_pred CCCccchHHHHHHHcCCCcee
Q 018528 124 GSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 124 T~~GrdlaprlAarL~~~lvt 144 (354)
...|--+...=|..+|.|+++
T Consensus 275 ~~E~~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 275 LYEGLPLVLIEAQASGLPCIL 295 (358)
T ss_pred cccCCCHHHHHHHHhCCCEEE
Confidence 777777777778888888764
No 217
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.25 E-value=4.2e+02 Score=26.22 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHH
Q 018528 73 AVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 73 ~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAar 137 (354)
+++++. .+|+|.+.+.|. .....|+.+.+.+..+.+..+-.+=+=.+...|.-+|--+|+.
T Consensus 147 ~~~~~~--~~Ga~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~ 207 (365)
T TIGR02660 147 LAEVAA--EAGADRFRFADT--VGILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAV 207 (365)
T ss_pred HHHHHH--HcCcCEEEEccc--CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 445555 478998887776 4566788888888877666543344446677888888777654
No 218
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=25.15 E-value=1.9e+02 Score=26.75 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceeeeEEe
Q 018528 103 WAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITDVIEI 149 (354)
Q Consensus 103 ~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtdv~~l 149 (354)
+...+...+++.+||+|++.......-++..++.+.+.+++.+....
T Consensus 72 ~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (374)
T cd03817 72 IPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTM 118 (374)
T ss_pred HHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCC
Confidence 33455566788899998886543334566778888999998876643
No 219
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=25.08 E-value=5.4e+02 Score=23.58 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=57.0
Q ss_pred ccccccccccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEE---------cCCC-CHHHHHHHHhhcCCCcc
Q 018528 16 CFHRPSISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLA---------GSGP-SFNEAVKHAASSHPSIS 85 (354)
Q Consensus 16 ~~~~~~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~---------G~~~-~~~~~a~~l~~~~~GaD 85 (354)
|.+=+--+|+.+++.++|+. .+..+++.+.+.. + ..=|+- |++. ..+.+.+.+. ....+
T Consensus 69 C~ICsd~~Rd~~~icVVe~p------~Dv~a~E~~~~f~--G-~YhVL~G~lspl~gigpe~l~i~~L~~Rl~--~~~~~ 137 (198)
T COG0353 69 CDICSDESRDKSQLCVVEEP------KDVLALEKTGEFR--G-LYHVLGGLLSPLDGIGPEDLNIDELLQRLA--EGSIK 137 (198)
T ss_pred CcCcCCcccCCceEEEEcch------HHHHHHHHhcccC--e-eEEEecCccCcccCCCcccccHHHHHHHHh--cCCCc
Confidence 44445567888888888864 6888899988875 3 233333 3321 2456677776 34455
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 018528 86 QVLVADSDKFAYPIAEPWAKLVHMIQQREK 115 (354)
Q Consensus 86 ~V~~~~~~~l~~~~~e~~a~aLa~li~~~~ 115 (354)
+|+++.+|-.+ -+++|.-|+++++...
T Consensus 138 EvIlAtnpTvE---GeaTA~YI~~~l~~~~ 164 (198)
T COG0353 138 EVILATNPTVE---GEATALYIARLLKPLG 164 (198)
T ss_pred eEEEecCCCcc---chHHHHHHHHHHhhcC
Confidence 89999887654 4778888888888753
No 220
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=25.08 E-value=75 Score=31.48 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=34.3
Q ss_pred CCCCCCCcEEEEeCccCCChhcHHHHHHHHHHhCCeecccHhhHhcCCCCCCcee
Q 018528 229 RPDLGSARIVVTGGRGLKSAENFKMIEKLAEKLGAAVGATRAVVDAGFVPNDLQV 283 (354)
Q Consensus 229 ~~~L~~A~iVV~~GrG~~~~e~~~~~~~LA~~lga~vG~SRp~vd~gw~p~~~qI 283 (354)
-.||-+.|.|+-||| ..+|+++.+++|-+ +-+.|+|+++-|
T Consensus 165 ikdl~npdrvligg~--etpeg~~av~~l~~------------vyehwvp~~~ii 205 (481)
T KOG2666|consen 165 IKDLFNPDRVLIGGR--ETPEGFQAVQALKD------------VYEHWVPREQII 205 (481)
T ss_pred hhhhcCCceEEECCC--CChhHHHHHHHHHH------------HHHhhCccccee
Confidence 358999999999999 57999999999875 456999987655
No 221
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.04 E-value=5.3e+02 Score=26.10 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=62.0
Q ss_pred cceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCcc-EEEEEeCCCCCCCCHHHH
Q 018528 25 SISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSIS-QVLVADSDKFAYPIAEPW 103 (354)
Q Consensus 25 ~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD-~V~~~~~~~l~~~~~e~~ 103 (354)
+++|+++.-++..-++=..+ +.+..+=. +-+..+++-|... ..+.-++.. ..++.. --|.++--.-.....+..
T Consensus 3 ~~Kv~~I~GTRPE~iKmapl--i~~~~~~~-~~~~~vi~TGQH~-d~em~~~~l-e~~~i~~pdy~L~i~~~~~tl~~~t 77 (383)
T COG0381 3 MLKVLTIFGTRPEAIKMAPL--VKALEKDP-DFELIVIHTGQHR-DYEMLDQVL-ELFGIRKPDYDLNIMKPGQTLGEIT 77 (383)
T ss_pred ceEEEEEEecCHHHHHHhHH--HHHHHhCC-CCceEEEEecccc-cHHHHHHHH-HHhCCCCCCcchhccccCCCHHHHH
Confidence 56788888877533321111 11111111 2456666778763 124444433 234544 223333222234455666
Q ss_pred HHH---HHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 104 AKL---VHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 104 a~a---La~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+.+ +.+++.+.+||+||+-.++..---++-.|.++.+|+.
T Consensus 78 ~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~ 120 (383)
T COG0381 78 GNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVG 120 (383)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceE
Confidence 654 4556888999999997665554444677777888765
No 222
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=24.88 E-value=4.6e+02 Score=22.76 Aligned_cols=54 Identities=15% Similarity=0.010 Sum_probs=35.5
Q ss_pred CCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeC-CCCCc-cchHHHHHHHc
Q 018528 81 HPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISA-SGSFG-KNVLPRAAALL 138 (354)
Q Consensus 81 ~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g-~T~~G-rdlaprlAarL 138 (354)
.+|.+-+.+---+ -+.+...++|.++++..+.|+|+.. .+..| +|+.+..-..+
T Consensus 33 ~~G~~v~~~~iv~----Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 33 EAGHRLADRAIVK----DDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred HCCCeEEEEEEcC----CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence 4787644332222 2456777888887755578988874 46666 58888877776
No 223
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.83 E-value=4.5e+02 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCcc--EEEeCCCCCccchHHHHHHHc
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYS--HIISASGSFGKNVLPRAAALL 138 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~--lVL~g~T~~GrdlaprlAarL 138 (354)
+.++++. .+|+|.+++.|.- ....|+.+.+.+..+.++. |+ +-+=.+...|.-++--+|+..
T Consensus 153 ~~~~~~~--~~Ga~~i~l~DT~--G~~~P~~v~~lv~~l~~~~-~~~~i~~H~Hnd~GlA~AN~laA~~ 216 (274)
T cd07938 153 EVAERLL--DLGCDEISLGDTI--GVATPAQVRRLLEAVLERF-PDEKLALHFHDTRGQALANILAALE 216 (274)
T ss_pred HHHHHHH--HcCCCEEEECCCC--CccCHHHHHHHHHHHHHHC-CCCeEEEEECCCCChHHHHHHHHHH
Confidence 4566666 5899999998774 5577899988888887664 33 444467788888888777644
No 224
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=24.81 E-value=4.8e+02 Score=24.81 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=38.4
Q ss_pred EEEEEEcCCCC-HHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCcc
Q 018528 59 VSMLLAGSGPS-FNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGK 128 (354)
Q Consensus 59 V~avv~G~~~~-~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~Gr 128 (354)
-.+.++|..++ .++++..+.+...|.+ + +..++.| |+++.- +++.+.|.+.+||+++.|...-.+
T Consensus 109 ~~vfllGgkp~V~~~a~~~l~~~~p~l~-i-vg~h~GY--f~~~e~-~~i~~~I~~s~pdil~VgmG~P~Q 174 (253)
T COG1922 109 KRVFLLGGKPGVAEQAAAKLRAKYPGLK-I-VGSHDGY--FDPEEE-EAIVERIAASGPDILLVGMGVPRQ 174 (253)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHCCCce-E-EEecCCC--CChhhH-HHHHHHHHhcCCCEEEEeCCCchh
Confidence 56677886532 3445555542222343 3 3333333 444444 688888889999999999865443
No 225
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=24.73 E-value=94 Score=30.35 Aligned_cols=77 Identities=27% Similarity=0.487 Sum_probs=47.4
Q ss_pred EEEEeCccCCChhcHHHHHHHHHHh-CCeecccHhhHhcCCCCCCceeccCCceeCCceEEEecccchhhhhhccCCCcE
Q 018528 237 IVVTGGRGLKSAENFKMIEKLAEKL-GAAVGATRAVVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKV 315 (354)
Q Consensus 237 iVV~~GrG~~~~e~~~~~~~LA~~l-ga~vG~SRp~vd~gw~p~~~qIGqtG~~V~P~lYia~GISGa~QH~~G~~~s~~ 315 (354)
++++||-|.. ++++.|...+ +..+-+-=-..|.||.. |..|.|++=- -+--++|.
T Consensus 4 v~lgGGtG~~-----~lL~GL~~~~~~~~iT~IVnt~DDggss--------G~~v~PDidt------vlyaLa~~----- 59 (303)
T PRK13606 4 TVLSGGTGTA-----KLLRGLKAVLPPEEITVVVNTGDDIWLH--------GLRVCPDLDT------VMYTLAGL----- 59 (303)
T ss_pred EEEeCccCHH-----HHHHHHHhccCCCCeEEEEECCcCCCcc--------CCEeCCChhh------HHHHhhcc-----
Confidence 3556666643 6788887776 44444333456888875 8888885421 12234444
Q ss_pred EEEEcCCCCCCcccccceEEeecHHHHHHHHHh
Q 018528 316 IVAVNKDADAPIFQVADYGLVGDLFEVIPELLE 348 (354)
Q Consensus 316 IVAIN~D~~ApIf~~aDygiVgD~~~vlp~l~~ 348 (354)
||.+. .+|+-||.+..+.+|.+
T Consensus 60 ---i~~~~--------~WG~~gdt~~~~~~L~~ 81 (303)
T PRK13606 60 ---IDPER--------GWGIAGDTFHTHEELAR 81 (303)
T ss_pred ---cCccc--------ccCccCchHHHHHHHHH
Confidence 23332 28999999999888754
No 226
>PRK13844 recombination protein RecR; Provisional
Probab=24.70 E-value=5.5e+02 Score=23.54 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=56.6
Q ss_pred CccccccccccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEc---------CCC-CHHHHHHHHhhcCCCc
Q 018528 15 RCFHRPSISRSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAG---------SGP-SFNEAVKHAASSHPSI 84 (354)
Q Consensus 15 ~~~~~~~~~~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G---------~~~-~~~~~a~~l~~~~~Ga 84 (354)
-|.+=+..+|+.+++.++|+. .++.+++.+..-. | +.=|+-| ++. ..+.+.+.+. ..++
T Consensus 71 ~C~IC~d~~Rd~~~iCVVE~~------~Dv~aiE~t~~y~--G-~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~--~~~v 139 (200)
T PRK13844 71 VCNICSNTNRDDTKLCIIESM------LDMIAIEEAGIYR--G-KYFVLNGRISPLDGIGPSELKLDILQQIIA--DRKI 139 (200)
T ss_pred CCCCCCCCCCCCCEEEEECCH------HHHHHHHhhCccc--e-EEEEccCccCccCCCChhhcCHHHHHHHHh--cCCC
Confidence 356666677888888888864 6888888877664 3 2333322 111 2456666665 3579
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHHHHHh
Q 018528 85 SQVLVADSDKFAYPIAEPWAKLVHMIQQR 113 (354)
Q Consensus 85 D~V~~~~~~~l~~~~~e~~a~aLa~li~~ 113 (354)
++|+++-+|-++ .|.++.-|+++++.
T Consensus 140 ~EVIlAt~~t~E---Ge~Ta~yi~~~lk~ 165 (200)
T PRK13844 140 DEVILAISPTVE---GETTAHFISQMIAK 165 (200)
T ss_pred cEEEEeCCCCcc---HHHHHHHHHHHhcC
Confidence 999998887654 57777788888875
No 227
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.68 E-value=2.4e+02 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=25.1
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCC
Q 018528 60 SMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFA 96 (354)
Q Consensus 60 ~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~ 96 (354)
.++++|.+..-..+++.|+ ..|+.++.++|.+..+
T Consensus 26 ~VlIiG~GglGs~va~~La--~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 26 HVLIVGAGALGAANAEALV--RAGIGKLTIADRDYVE 60 (338)
T ss_pred cEEEECCCHHHHHHHHHHH--HcCCCEEEEEcCCccc
Confidence 5667787632355778887 5899999999887543
No 228
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=24.50 E-value=2.4e+02 Score=27.11 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhcCccEEEe
Q 018528 101 EPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 101 e~~a~aLa~li~~~~P~lVL~ 121 (354)
+...+.|.+++++.+|++|+.
T Consensus 109 ~e~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 109 DEAAGALVAVIREVRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHHHhCCcEEEe
Confidence 567789999999999999987
No 229
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=24.47 E-value=26 Score=17.84 Aligned_cols=10 Identities=30% Similarity=-0.001 Sum_probs=7.7
Q ss_pred hcCCCccccc
Q 018528 11 SKRPRCFHRP 20 (354)
Q Consensus 11 ~~~~~~~~~~ 20 (354)
+-|+|||+.+
T Consensus 4 smrlrfptln 13 (14)
T PF08057_consen 4 SMRLRFPTLN 13 (14)
T ss_pred ceeeeccccC
Confidence 5688998875
No 230
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.47 E-value=3.5e+02 Score=29.66 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=57.2
Q ss_pred CCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 018528 36 NGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK 115 (354)
Q Consensus 36 ~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~ 115 (354)
...+++.+.|++.+=++++ -+ +..+-|++ +..++.++ +..|.|+++ .+..||.-++.+.++-++ +
T Consensus 535 ~D~~R~~a~~aI~~L~~~G--i~-~~mLTGDn---~~~A~~iA-~~lGId~v~-------AellPedK~~~V~~l~~~-g 599 (713)
T COG2217 535 ADELRPDAKEAIAALKALG--IK-VVMLTGDN---RRTAEAIA-KELGIDEVR-------AELLPEDKAEIVRELQAE-G 599 (713)
T ss_pred eCCCChhHHHHHHHHHHCC--Ce-EEEEcCCC---HHHHHHHH-HHcChHhhe-------ccCCcHHHHHHHHHHHhc-C
Confidence 4578999999998888876 44 44455765 66677776 468998875 467899999999988644 3
Q ss_pred ccEEEeCCCCCccchHHHHHH
Q 018528 116 YSHIISASGSFGKNVLPRAAA 136 (354)
Q Consensus 116 P~lVL~g~T~~GrdlaprlAa 136 (354)
....+.|..-+ =||-||+
T Consensus 600 ~~VamVGDGIN---DAPALA~ 617 (713)
T COG2217 600 RKVAMVGDGIN---DAPALAA 617 (713)
T ss_pred CEEEEEeCCch---hHHHHhh
Confidence 45666665433 3555553
No 231
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=24.28 E-value=1.8e+02 Score=26.13 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCC
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFA 96 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~ 96 (354)
-.++++|.+..-..+++.|+ ..|+.++.++|++..+
T Consensus 22 ~~VlviG~GglGs~ia~~La--~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLA--GAGVGTIVIVDDDHVD 57 (202)
T ss_pred CCEEEECCCHHHHHHHHHHH--HcCCCeEEEecCCEEc
Confidence 35667776632356778887 5899999999987543
No 232
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=23.89 E-value=5.1e+02 Score=25.30 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCC--CCcEEEEEEcCCC-------C-------HHHHHHHHhhcCCCccEEEEEeC-CCCCCCCHHHHHH
Q 018528 43 SLSAVEAAKSLSD--DNSVSMLLAGSGP-------S-------FNEAVKHAASSHPSISQVLVADS-DKFAYPIAEPWAK 105 (354)
Q Consensus 43 slell~~A~~La~--~~~V~avv~G~~~-------~-------~~~~a~~l~~~~~GaD~V~~~~~-~~l~~~~~e~~a~ 105 (354)
=..+++.|++.++ +..+.++.+-+.+ . .++-.+.+. .+|+|.+++.+- ..+....++.+..
T Consensus 31 Hq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~--~~gvd~~~v~~F~~~fa~ls~~~Fv~ 108 (304)
T COG0196 31 HQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLA--GYGVDALVVLDFDLEFANLSAEEFVE 108 (304)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHH--hcCCcEEEEEeCCHhHhhCCHHHHHH
Confidence 3456777776655 3556666664321 1 334445565 699999998864 4688888888865
Q ss_pred HHHHHHHhcCccEEEeCCCC-Ccc
Q 018528 106 LVHMIQQREKYSHIISASGS-FGK 128 (354)
Q Consensus 106 aLa~li~~~~P~lVL~g~T~-~Gr 128 (354)
.+++..++..|++|.+- +|+
T Consensus 109 ---~lv~~l~~k~ivvG~DF~FGk 129 (304)
T COG0196 109 ---LLVEKLNVKHIVVGFDFRFGK 129 (304)
T ss_pred ---HHHhccCCcEEEEecccccCC
Confidence 67888899999999754 554
No 233
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=23.85 E-value=64 Score=30.17 Aligned_cols=28 Identities=18% Similarity=0.079 Sum_probs=22.0
Q ss_pred EEEeCCCCCcc-chHHHHHHHcCCCceee
Q 018528 118 HIISASGSFGK-NVLPRAAALLDVSPITD 145 (354)
Q Consensus 118 lVL~g~T~~Gr-dlaprlAarL~~~lvtd 145 (354)
++++|.|..|| ++|-.||.++|+|++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 57889999998 89999999999998863
No 234
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.41 E-value=3.6e+02 Score=26.96 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKL 106 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~a 106 (354)
.+.|+.+.. ....+.....+|+ -++..+..... ..+-.+++. ...+.+.+++-+...++
T Consensus 289 rv~i~~~~~------~~~~la~~l~elG--m~v~~~~~~~~--~~~~~~~~~-~~~~~~~~v~~~~~~~e---------- 347 (410)
T cd01968 289 KAALYTGGV------KSWSLVSALQDLG--MEVVATGTQKG--TKEDYERIK-ELLGEGTVIVDDANPRE---------- 347 (410)
T ss_pred EEEEEcCCc------hHHHHHHHHHHCC--CEEEEEecccC--CHHHHHHHH-HHhCCCcEEEeCCCHHH----------
Q ss_pred HHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 107 VHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 107 La~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+.+.+++.+||+++ |....-.+|.++|.|++
T Consensus 348 ~~~~i~~~~pDl~i------g~s~~~~~a~~~gip~~ 378 (410)
T cd01968 348 LKKLLKEKKADLLV------AGGKERYLALKLGIPFC 378 (410)
T ss_pred HHHHHhhcCCCEEE------ECCcchhhHHhcCCCEE
No 235
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.39 E-value=1.2e+02 Score=27.48 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=32.3
Q ss_pred CceEEEecccchhhhhhcc-----CCCcEEEEEcCCCCCCcccccceEEeec
Q 018528 292 PELYMAFGVSGAIQHLAGM-----RDSKVIVAVNKDADAPIFQVADYGLVGD 338 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G~-----~~s~~IVAIN~D~~ApIf~~aDygiVgD 338 (354)
-+|.|.+|-|+++.=.+++ +.-..||-||.+|. |.=..+|+-|-+|
T Consensus 156 aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~-~~d~~~d~~~~~~ 206 (206)
T cd01410 156 ADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPT-PKDKLADLVIHGD 206 (206)
T ss_pred CCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCC-CCCccccEEEeCC
Confidence 5799999999998755554 22345777999874 4445678877665
No 236
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=23.37 E-value=1.6e+02 Score=27.77 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=8.2
Q ss_pred ceEEEecccc
Q 018528 293 ELYMAFGVSG 302 (354)
Q Consensus 293 ~lYia~GISG 302 (354)
.+|+.-|++.
T Consensus 244 ~l~Vs~G~G~ 253 (271)
T PRK11340 244 QIYTTRGVGS 253 (271)
T ss_pred EEEEeCCccC
Confidence 5899999973
No 237
>PRK02186 argininosuccinate lyase; Provisional
Probab=23.31 E-value=3.7e+02 Score=30.12 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=52.3
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKL 106 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~a 106 (354)
+.+||+|...... ..-++.+|++++ +.++++..++ ... ..+. ..++..+..+ ..+.+...
T Consensus 3 ~~~~~ie~~~~~~---g~~l~~aa~~lG----~~vi~v~~~~--~~~-~~~~---~~~~~~~~~d-----~~d~~~l~-- 62 (887)
T PRK02186 3 GIFVFIESNTTGT---GELLLRKALLRG----FTPYFLTANR--GKY-PFLD---AIRVVTISAD-----TSDPDRIH-- 62 (887)
T ss_pred cEEEEEcCCCCcc---HHHHHHHHHHcC----CEEEEEeCCc--hhh-chhh---hcceeEEEcC-----CCCHHHHH--
Confidence 4678888654333 345778899997 4455554331 110 1111 1244444432 23444443
Q ss_pred HHHHHHhc-CccEEEeCCCCCccchHHHHHHHcCCCc
Q 018528 107 VHMIQQRE-KYSHIISASGSFGKNVLPRAAALLDVSP 142 (354)
Q Consensus 107 La~li~~~-~P~lVL~g~T~~GrdlaprlAarL~~~l 142 (354)
+++++. .++.|+.+ +...-.++.+++.+||.|.
T Consensus 63 --~~~~~~~~i~~V~~~-se~~v~~aa~lae~lglpg 96 (887)
T PRK02186 63 --RFVSSLDGVAGIMSS-SEYFIEVASEVARRLGLPA 96 (887)
T ss_pred --HHHHhcCCCCEEEeC-chhhHHHHHHHHHHhCcCC
Confidence 444454 45666544 5567788999999999884
No 238
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=23.17 E-value=6.9e+02 Score=24.14 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHhcCC--CCcEEEEEE--cCC----------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH--
Q 018528 40 KSQSLSAVEAAKSLSD--DNSVSMLLA--GSG----------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA-- 100 (354)
Q Consensus 40 ~~~slell~~A~~La~--~~~V~avv~--G~~----------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~-- 100 (354)
++.-+|++-.+..+.+ ..++++|+. |.. + +.+.+++-+. .+|+|+|+.+|- ++.++|-.
T Consensus 52 nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~--~~g~d~vi~vDlHs~~i~~~F~ip 129 (302)
T PLN02369 52 NENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLIT--EAGADRVLACDLHSGQSMGYFDIP 129 (302)
T ss_pred chHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHH--hcCCCEEEEEECCchHHhhccCCc
Confidence 5556666554333322 246777753 321 1 1233455554 579999999972 22222221
Q ss_pred ---HHHHHHHHHHHHhcC---ccEEEeCCCCCccchHHHHHHHc-CCCc
Q 018528 101 ---EPWAKLVHMIQQREK---YSHIISASGSFGKNVLPRAAALL-DVSP 142 (354)
Q Consensus 101 ---e~~a~aLa~li~~~~---P~lVL~g~T~~GrdlaprlAarL-~~~l 142 (354)
......+++.+++.. .+.++++-..-|-.++-.+|..| +.++
T Consensus 130 ~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a~~l~~~~~ 178 (302)
T PLN02369 130 VDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPL 178 (302)
T ss_pred eecccchHHHHHHHHHhCCCCCceEEEEECcChHHHHHHHHHHcCCCCE
Confidence 122244555664432 46788888888889999999888 4554
No 239
>PRK15456 universal stress protein UspG; Provisional
Probab=23.08 E-value=1.7e+02 Score=24.05 Aligned_cols=40 Identities=5% Similarity=-0.014 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCccEEEeCCCCCc------cchHHHHHHHcCCCce
Q 018528 104 AKLVHMIQQREKYSHIISASGSFG------KNVLPRAAALLDVSPI 143 (354)
Q Consensus 104 a~aLa~li~~~~P~lVL~g~T~~G------rdlaprlAarL~~~lv 143 (354)
.+.|.+.+++.++|+|++|+.-.+ ...+-++..+..+|++
T Consensus 94 ~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVL 139 (142)
T PRK15456 94 RDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVL 139 (142)
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEE
Confidence 355677888899999999985433 1455666666666654
No 240
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.04 E-value=1.3e+02 Score=24.17 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=36.0
Q ss_pred eCC-ceEEEecccchhhhhhc------cCCCcEEEEEcCCCCCCcccccceEEee
Q 018528 290 VAP-ELYMAFGVSGAIQHLAG------MRDSKVIVAVNKDADAPIFQVADYGLVG 337 (354)
Q Consensus 290 V~P-~lYia~GISGa~QH~~G------~~~s~~IVAIN~D~~ApIf~~aDygiVg 337 (354)
+.+ ++.|.+..||..+-+.- -++++ ||+|=.+++.|+-+.||+-+.-
T Consensus 45 ~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~-vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 45 VTPGDVVIAISNSGETDELLNLLPHLKRRGAP-IIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe-EEEEeCCCCCchhhhCCEEEEC
Confidence 444 79999999998873322 23333 8889999999999999998864
No 241
>PRK11890 phosphate acetyltransferase; Provisional
Probab=22.91 E-value=7e+02 Score=24.45 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCcc----EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCcc
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSIS----QVLVADSDKFAYPIAEPWAKLVHMIQQREKYS 117 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD----~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~ 117 (354)
..++++..|.+. +=+..+++|.. +...+.+. ..|.| +++..+ +++.+++.-..+++..+.|
T Consensus 34 ~vl~Aa~~a~~~---gl~~piLvG~~---~~I~~~a~--~~g~dl~~~eII~~~-------~~~~~a~~av~mV~~G~AD 98 (312)
T PRK11890 34 SSLRGAVEAAQL---GLITPILVGPR---ARIEAVAA--ECGLDLSGYEIVDAP-------HSHAAAAKAVELVREGEAE 98 (312)
T ss_pred HHHHHHHHHHHc---CCEEEEEECCH---HHHHHHHH--HcCCCcCCCEEECCC-------ChHHHHHHHHHHHHcCCCC
Confidence 445554444443 34667888976 33322222 35655 343322 2344666667789999999
Q ss_pred EEEeCCCCCc
Q 018528 118 HIISASGSFG 127 (354)
Q Consensus 118 lVL~g~T~~G 127 (354)
.++-|.....
T Consensus 99 ~lmkG~i~Tt 108 (312)
T PRK11890 99 ALMKGSLHTD 108 (312)
T ss_pred EEecCCcccH
Confidence 9999986554
No 242
>PLN02846 digalactosyldiacylglycerol synthase
Probab=22.89 E-value=6.2e+02 Score=26.18 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC
Q 018528 45 SAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 45 ell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
++|.+..+|.+ ...+..+++|.++..+++.+.+. ..|.+..+ ... .. +.+ ++.. .+|++++++
T Consensus 245 ~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~--~l~l~~~v-f~G--~~--~~~-------~~~~--~~DvFv~pS 308 (462)
T PLN02846 245 ELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAE--KLELDVRV-YPG--RD--HAD-------PLFH--DYKVFLNPS 308 (462)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHH--hcCCcEEE-ECC--CC--CHH-------HHHH--hCCEEEECC
Confidence 34555455533 23577888987754444444333 35665333 222 11 222 2333 338999999
Q ss_pred CCCccchHHHHHHHcCCCcee
Q 018528 124 GSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 124 T~~GrdlaprlAarL~~~lvt 144 (354)
...+--+.-.=|...|.|+++
T Consensus 309 ~~Et~g~v~lEAmA~G~PVVa 329 (462)
T PLN02846 309 TTDVVCTTTAEALAMGKIVVC 329 (462)
T ss_pred CcccchHHHHHHHHcCCcEEE
Confidence 988887777788889999775
No 243
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.89 E-value=3e+02 Score=27.79 Aligned_cols=102 Identities=8% Similarity=0.020 Sum_probs=57.2
Q ss_pred cChHHHHHHHH--HHhcCCCCcEEEEEE--cCC---------C-CHHHHHHHHhhcCCCccEEEEEeC--CCCCCCCH--
Q 018528 39 IKSQSLSAVEA--AKSLSDDNSVSMLLA--GSG---------P-SFNEAVKHAASSHPSISQVLVADS--DKFAYPIA-- 100 (354)
Q Consensus 39 l~~~slell~~--A~~La~~~~V~avv~--G~~---------~-~~~~~a~~l~~~~~GaD~V~~~~~--~~l~~~~~-- 100 (354)
.++.-.|++=. |.+ +...++++|+. |.. + +.+-.++-+. .+|+|+|+.+|- ++++++..
T Consensus 104 ~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~~~~e~itak~vA~lL~--~~G~d~vitvDlHs~~i~~~F~~~ 180 (382)
T PRK06827 104 PDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKRKGRESLDCALALQELE--ELGVDNIITFDAHDPRIENAIPLM 180 (382)
T ss_pred CcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccccCCCCccHHHHHHHHH--HcCCCeEEEecCChHHhcccCCCC
Confidence 34555665433 344 32347887763 431 1 1233444444 579999999973 22332221
Q ss_pred ----HHHHHHHHHHHHh----c---CccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 101 ----EPWAKLVHMIQQR----E---KYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 101 ----e~~a~aLa~li~~----~---~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
..-...+.+.+++ . ..+.++++-+.-|...+..+|..|+.++.
T Consensus 181 pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg~~~a 234 (382)
T PRK06827 181 GFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDLG 234 (382)
T ss_pred CcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhCCCEE
Confidence 1111223344422 1 14678888888888899999999998764
No 244
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=22.85 E-value=4e+02 Score=26.20 Aligned_cols=104 Identities=12% Similarity=0.195 Sum_probs=68.0
Q ss_pred HhcCCCccccccccccceeEEEEEecCCcc---ChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCcc
Q 018528 10 LSKRPRCFHRPSISRSISTLVLGEHENGSI---KSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSIS 85 (354)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~IlV~~E~~~g~l---~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD 85 (354)
+.+|=+++|.|.. +|+-+++.-...|.+ .+..-++-..|+.|+. -.+++++++-.+. -+++.+++. ..|+.
T Consensus 105 ~a~rG~ll~aPd~--YM~KiavGp~~~G~vdl~~p~~~Nl~~vA~algk~~~dltV~vLdRpR-H~~lI~eiR--~~Gar 179 (321)
T TIGR00330 105 VGDKGTFLNAPDM--YMEKLVVGPGAKGTIDLNLPLADNLRNVAKALGKPLSDLTVTILAKPR-HDAVIAEMQ--QLGVR 179 (321)
T ss_pred EcCCCCcCCCchh--ceeeeeECcccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCch-HHHHHHHHH--HcCCe
Confidence 4578889998876 666666665555554 3444555555666665 3689999997553 678888887 47985
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe-CCCCCc
Q 018528 86 QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS-ASGSFG 127 (354)
Q Consensus 86 ~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~-g~T~~G 127 (354)
|.+++|- ..+.+|+..+.....|+++- |.++.|
T Consensus 180 -i~Li~DG--------DVa~ai~~~~~~s~vD~~~GiGGAPEG 213 (321)
T TIGR00330 180 -VFAIPDG--------DVAASILTCMPDSEVDVLYGIGGAPEG 213 (321)
T ss_pred -EEEeccc--------cHHHHHHHhCCCCCeeEEEEcCCChHH
Confidence 7776552 24566666666666676654 446655
No 245
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.84 E-value=4.5e+02 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=21.7
Q ss_pred HHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 107 VHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 107 La~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+.+.+++.+||+++-. ...-++|.++|+|++
T Consensus 369 ~~~~i~~~~pDliiG~------s~~~~~a~~~gip~v 399 (435)
T cd01974 369 LRSLLFTEPVDLLIGN------TYGKYIARDTDIPLV 399 (435)
T ss_pred HHHHHhhcCCCEEEEC------ccHHHHHHHhCCCEE
Confidence 4556677788887632 234578888999986
No 246
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.67 E-value=3.7e+02 Score=27.11 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHH-----hhcCCCccEEEEEeCCCCCCCCHH
Q 018528 27 STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHA-----ASSHPSISQVLVADSDKFAYPIAE 101 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l-----~~~~~GaD~V~~~~~~~l~~~~~e 101 (354)
.+.|+.+.. ..+.+...-.+++ .++..++.+.. .....+++ . .+.+-.++.+.+..+
T Consensus 301 ~v~i~~~~~------~~~~l~~~L~e~G--~~v~~v~~~~~--~~~~~~~~~~~~~~---~~~~~~~v~~~d~~e----- 362 (428)
T cd01965 301 RVAIAGDPD------LLLGLSRFLLEMG--AEPVAAVTGTD--NPPFEKRMELLASL---EGIPAEVVFVGDLWD----- 362 (428)
T ss_pred EEEEEcChH------HHHHHHHHHHHcC--CcceEEEEcCC--CchhHHHHHHhhhh---cCCCceEEECCCHHH-----
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 102 PWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
+.+.+++.+||+|+ |.....++|.+++.|++
T Consensus 363 -----l~~~i~~~~pdlii------g~~~~~~~a~~~~ip~i 393 (428)
T cd01965 363 -----LESLAKEEPVDLLI------GNSHGRYLARDLGIPLV 393 (428)
T ss_pred -----HHHHhhccCCCEEE------ECchhHHHHHhcCCCEE
No 247
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=22.09 E-value=2.5e+02 Score=26.51 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=37.0
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEE
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLV 89 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~ 89 (354)
=++|+|.-+|--.|+.-|.+...++. +-+..|..-...+.+++++ ..|||-+++
T Consensus 166 ~~~YlEagsga~~Pv~~e~v~~v~~~------~~LivGGGIrs~E~A~~~a--~agAD~IVt 219 (240)
T COG1646 166 PVVYLEAGSGAGDPVPVEMVSRVLSD------TPLIVGGGIRSPEQAREMA--EAGADTIVT 219 (240)
T ss_pred eEEEEEecCCCCCCcCHHHHHHhhcc------ceEEEcCCcCCHHHHHHHH--HcCCCEEEE
Confidence 48899999999999998877444332 2455665422356677887 469996655
No 248
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=22.00 E-value=64 Score=26.11 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCC-CCCHHHHHHHHHHHH--HhcCccE
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFA-YPIAEPWAKLVHMIQ--QREKYSH 118 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~-~~~~e~~a~aLa~li--~~~~P~l 118 (354)
...++.+.-.+. |.+|+++...... . ..+.. ..|+. ++.+.-+... ..........+..++ ++.+||+
T Consensus 6 ~~~~l~~~L~~~--G~~V~v~~~~~~~--~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dv 76 (160)
T PF13579_consen 6 YVRELARALAAR--GHEVTVVTPQPDP--E--DDEEE--EDGVR-VHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDV 76 (160)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEE---G--G--G-SEE--ETTEE-EEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SE
T ss_pred HHHHHHHHHHHC--CCEEEEEecCCCC--c--ccccc--cCCce-EEeccCCccchhhhhHHHHHHHHHHHhhhccCCeE
Confidence 344444433333 3788888776552 1 11122 23544 5554433222 111222445667777 7789999
Q ss_pred EEeCCCCCccchHHHHHH-HcCCCceeeeE
Q 018528 119 IISASGSFGKNVLPRAAA-LLDVSPITDVI 147 (354)
Q Consensus 119 VL~g~T~~GrdlaprlAa-rL~~~lvtdv~ 147 (354)
|.+.... --+.+.++. +.+.|++.++-
T Consensus 77 v~~~~~~--~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 77 VHAHSPT--AGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp EEEEHHH--HHHHHHHHHHHHT--EEEE-S
T ss_pred EEecccc--hhHHHHHHHHccCCcEEEEEC
Confidence 9987732 335556666 77888887664
No 249
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=21.99 E-value=5.4e+02 Score=24.97 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=62.5
Q ss_pred cChHHHHHHHHHHhcCC--CCcEEEEEEcCCC--------------CHHHHHHHHhhcCCCccEEEEEeC-CCCCCCCHH
Q 018528 39 IKSQSLSAVEAAKSLSD--DNSVSMLLAGSGP--------------SFNEAVKHAASSHPSISQVLVADS-DKFAYPIAE 101 (354)
Q Consensus 39 l~~~slell~~A~~La~--~~~V~avv~G~~~--------------~~~~~a~~l~~~~~GaD~V~~~~~-~~l~~~~~e 101 (354)
++.-=..++..|+++++ +....++.+-+.+ ..++-...+. .+|+|.+++++- +.+....++
T Consensus 25 vH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~--~~gVD~~~~~~F~~~~~~ls~e 102 (305)
T PRK05627 25 VHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLA--ELGVDYVLVLPFDEEFAKLSAE 102 (305)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHH--HcCCCEEEEecCCHHHhcCCHH
Confidence 55666788999999876 3344455543221 1233334444 589999999763 356677777
Q ss_pred HHHHHHHHHHHhcCccEEEeCCCC-Ccc------chHHHHHHHcCCC
Q 018528 102 PWAKLVHMIQQREKYSHIISASGS-FGK------NVLPRAAALLDVS 141 (354)
Q Consensus 102 ~~a~aLa~li~~~~P~lVL~g~T~-~Gr------dlaprlAarL~~~ 141 (354)
.+.+-+ ++++.+++.|++|.+. +|+ +..-.++..+|..
T Consensus 103 ~Fi~~~--l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~ 147 (305)
T PRK05627 103 EFIEDL--LVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFE 147 (305)
T ss_pred HHHHHH--HHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcE
Confidence 775421 3556899999999966 453 4455666666654
No 250
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.98 E-value=1.4e+02 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCccEEEeCCCCCccc-hHH-HHHHHc-CCCceeeeEEee
Q 018528 100 AEPWAKLVHMIQQREKYSHIISASGSFGKN-VLP-RAAALL-DVSPITDVIEIS 150 (354)
Q Consensus 100 ~e~~a~aLa~li~~~~P~lVL~g~T~~Grd-lap-rlAarL-~~~lvtdv~~l~ 150 (354)
...+.+.|.+++++.+||+|++-+-....- ++. |--..+ +.|+++=++++.
T Consensus 74 ~~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~ 127 (169)
T PF06925_consen 74 SRLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFD 127 (169)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCC
Confidence 345566788889999999999877543333 332 333335 577777777664
No 251
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=21.95 E-value=16 Score=33.26 Aligned_cols=21 Identities=48% Similarity=1.026 Sum_probs=19.4
Q ss_pred CceeCCceEEEecc-----cchhhhh
Q 018528 287 GKIVAPELYMAFGV-----SGAIQHL 307 (354)
Q Consensus 287 G~~V~P~lYia~GI-----SGa~QH~ 307 (354)
|+.+-|-+||++|+ ||.+||+
T Consensus 163 g~~l~p~v~I~LGi~Il~esgti~~l 188 (191)
T PF03596_consen 163 GRWLVPIVYIGLGIYILIESGTIQHL 188 (191)
T ss_pred cccHHHHHHHHhCceeeEeCCHHHHH
Confidence 78889999999999 9999997
No 252
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=21.80 E-value=6.5e+02 Score=24.97 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=44.9
Q ss_pred HHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCC
Q 018528 45 SAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISAS 123 (354)
Q Consensus 45 ell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~ 123 (354)
.++.+..+|.+ +..+..+++|.++..+.+.+.+. ..|.+..+.+... ...+... ++++ ..|++++|+
T Consensus 239 ~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~--~~~l~~~V~~~G~----~~~~el~----~~l~--~aDv~v~pS 306 (406)
T PRK15427 239 VAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIE--QYQLEDVVEMPGF----KPSHEVK----AMLD--DADVFLLPS 306 (406)
T ss_pred HHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHH--HcCCCCeEEEeCC----CCHHHHH----HHHH--hCCEEEECC
Confidence 45666666654 35688888887632233333333 4676443333221 1122222 3333 348888887
Q ss_pred CC------CccchHHHHHHHcCCCcee
Q 018528 124 GS------FGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 124 T~------~GrdlaprlAarL~~~lvt 144 (354)
.. .|--+.-.=|..+|.|+++
T Consensus 307 ~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 307 VTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred ccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 42 2322333446667777654
No 253
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.73 E-value=1.9e+02 Score=27.07 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=37.5
Q ss_pred eEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEe
Q 018528 28 TLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVAD 91 (354)
Q Consensus 28 IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~ 91 (354)
-++|+|...+.-.+.+.+++...++.. ..+-+.+|.+-...+.++++. ..|+|.|++-.
T Consensus 156 ~~vYle~gs~~g~~~~~e~I~~v~~~~---~~~pvivGGGIrs~e~a~~~l--~~GAD~VVVGS 214 (232)
T PRK04169 156 PIVYLEYGGGAGDPVPPEMVKAVKKAL---DITPLIYGGGIRSPEQARELM--AAGADTIVVGN 214 (232)
T ss_pred CeEEEECCCCCCCCCCHHHHHHHHHhc---CCCcEEEECCCCCHHHHHHHH--HhCCCEEEECh
Confidence 588999777766777888888887754 221234454311244456644 37999887743
No 254
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=21.69 E-value=2.9e+02 Score=22.10 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=19.4
Q ss_pred CCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe
Q 018528 82 PSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 82 ~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~ 121 (354)
.|++.+|.++++ +...+++.++++..++.+|++
T Consensus 18 aGi~~~~~v~~~-------ee~~~~l~~l~~~~d~gII~i 50 (100)
T PRK03957 18 AGLTEVYEVKNP-------EEAKNAIKELVENDEIGIIII 50 (100)
T ss_pred cCCCceEEeCCH-------HHHHHHHHHHhhCCCeEEEEE
Confidence 477666655432 455566666666556666663
No 255
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.35 E-value=2.9e+02 Score=26.70 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceee
Q 018528 97 YPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITD 145 (354)
Q Consensus 97 ~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtd 145 (354)
.++++....+..+++.+.+.+.|+-+.++.-......++.+.+.|+++-
T Consensus 51 ~~~p~~a~~~a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 51 QSNPNRAGLVAQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred CCCHHHHHHHHHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 5788999999999999888888876554433333335788999998863
No 256
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=21.27 E-value=93 Score=30.60 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCCCHHHHHHHHhhcCCCccEE-EEEeCCCCCCCCHHHHHH---HHHHHHHhcCccEEEeCCCCCccchHH
Q 018528 57 NSVSMLLAGSGPSFNEAVKHAASSHPSISQV-LVADSDKFAYPIAEPWAK---LVHMIQQREKYSHIISASGSFGKNVLP 132 (354)
Q Consensus 57 ~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V-~~~~~~~l~~~~~e~~a~---aLa~li~~~~P~lVL~g~T~~Grdlap 132 (354)
-++..++-|..- .......+. ..+|..++ +.++.+. .......+. .+.+++++.+||+||+-.+++---.++
T Consensus 9 ~~~~li~tG~H~-~~~~g~~~~-~~f~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~a 84 (346)
T PF02350_consen 9 FELILIVTGQHL-DPEMGDTFF-EGFGIPKPDYLLDSDS--QSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAA 84 (346)
T ss_dssp EEEEEEEECSS---CHHHHHHH-HHTT--SEEEE--STT--S-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHH
T ss_pred CCEEEEEeCCCC-CHHHHHHHH-hhCCCCCCCccccccc--chHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHH
Confidence 367777778661 123333333 12455333 3333222 233344443 455667888999999887777767778
Q ss_pred HHHHHcCCCc
Q 018528 133 RAAALLDVSP 142 (354)
Q Consensus 133 rlAarL~~~l 142 (354)
..|..+++|+
T Consensus 85 laA~~~~ipv 94 (346)
T PF02350_consen 85 LAAFYLNIPV 94 (346)
T ss_dssp HHHHHTT-EE
T ss_pred HHHHHhCCCE
Confidence 8899999993
No 257
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=21.20 E-value=1.2e+02 Score=27.88 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=27.9
Q ss_pred CCceEEEecccchhhhhhccCCCcEEEE---EcCCCCCCcc
Q 018528 291 APELYMAFGVSGAIQHLAGMRDSKVIVA---VNKDADAPIF 328 (354)
Q Consensus 291 ~P~lYia~GISGa~QH~~G~~~s~~IVA---IN~D~~ApIf 328 (354)
+|++-|-+|+.|+.+. +++--|+||+ ++.|-+...|
T Consensus 66 ~p~~II~~G~aG~l~~--~l~~GDvvi~~~~~~~d~~~~~~ 104 (228)
T TIGR01704 66 KPDVIINTGSAGGLAP--TLKVGDIVVSDEARYHDADVTAF 104 (228)
T ss_pred CCCEEEEEeeccCCCC--CCccCCEEEEEEEEEccCccccc
Confidence 5999999999999998 5666777776 4566665554
No 258
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=21.15 E-value=4.6e+02 Score=24.58 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=46.6
Q ss_pred eeEEEEEecCCccChHHHHH------------HHHHHhcCCCCcEEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCC
Q 018528 27 STLVLGEHENGSIKSQSLSA------------VEAAKSLSDDNSVSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDK 94 (354)
Q Consensus 27 ~IlV~~E~~~g~l~~~slel------------l~~A~~La~~~~V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~ 94 (354)
-|+.++++.+-.+..-.-+. +..++++ +.++..|++|.. .....-.+ .+++|.+|...+..
T Consensus 68 PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~--~vP~IsvI~g~a--~ggg~lam---g~~ad~v~Alp~A~ 140 (238)
T TIGR03134 68 PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLA--GHPVIGLIYGKA--ISGAFLAH---GLQADRIIALPGAM 140 (238)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcC--CCCEEEEEeCCc--cHHHHHHH---ccCcCeEEEcCCcE
Confidence 37778887655543322221 1112222 378888999876 33322222 25799999999888
Q ss_pred CCCCCHHHHHHHHH
Q 018528 95 FAYPIAEPWAKLVH 108 (354)
Q Consensus 95 l~~~~~e~~a~aLa 108 (354)
+.-..+|..+.++-
T Consensus 141 i~vm~~e~aa~I~~ 154 (238)
T TIGR03134 141 VHVMDLESMARVTK 154 (238)
T ss_pred EEecCHHHHHHHHc
Confidence 88888888877653
No 259
>PRK08223 hypothetical protein; Validated
Probab=21.09 E-value=3.7e+02 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=36.2
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCC--------CCHH----HHHHHHHHHHHhcCccE
Q 018528 60 SMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAY--------PIAE----PWAKLVHMIQQREKYSH 118 (354)
Q Consensus 60 ~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~--------~~~e----~~a~aLa~li~~~~P~l 118 (354)
.++++|....-...++.|+ ..|+.++.++|++..+. |..+ .-++++++.+++.+|++
T Consensus 29 ~VlIvG~GGLGs~va~~LA--~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v 97 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLA--RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPEL 97 (287)
T ss_pred CEEEECCCHHHHHHHHHHH--HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCC
Confidence 4556776531245677787 58999999999875443 1222 33456667777777643
No 260
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=21.08 E-value=4.5e+02 Score=25.86 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=67.7
Q ss_pred HhcCCCccccccccccceeEEEEEecCCcc---ChHHHHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCcc
Q 018528 10 LSKRPRCFHRPSISRSISTLVLGEHENGSI---KSQSLSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSIS 85 (354)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~IlV~~E~~~g~l---~~~slell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~GaD 85 (354)
..+|=+++|.|-. +|+-+++.-...|.+ .+...|+-..|+.|+. -.+++++++-.+. -+++.+++. ..|+.
T Consensus 105 ~a~rG~ll~aPd~--YM~KiavGp~~~G~idl~~p~~~Nl~~vA~algk~v~dltV~vLdRpR-H~~lI~eiR--~~Gar 179 (321)
T PRK12388 105 FAPRDSLLHAPDM--YMKKLVVNRLAAGAIDLSLPLADNLRNVARALGKPLDKLRMVTLDKPR-LSAAIEEAT--QLGVK 179 (321)
T ss_pred EcCCCCcCCCchh--ceeeeeECcccCCeecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCch-HHHHHHHHH--HcCCe
Confidence 3577888998876 566666655455554 3444555445666665 3689999997553 678888887 47985
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe-CCCCCc
Q 018528 86 QVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS-ASGSFG 127 (354)
Q Consensus 86 ~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~-g~T~~G 127 (354)
|.+++|- ..+.++...+...+.|+++- |.++.|
T Consensus 180 -I~Li~DG--------DVa~ai~~~~~~s~vD~~~GiGGAPEG 213 (321)
T PRK12388 180 -VFALPDG--------DVAASVLTCWQDNPYDVMYTIGGAPEG 213 (321)
T ss_pred -EEEeccc--------cHHHHHHHhCCCCCeeEEEEcCCChHH
Confidence 7777652 24566666666666676664 446655
No 261
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=21.03 E-value=5.9e+02 Score=26.79 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCc-cEEEeCCCCCccchHHHHHHHcCC
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKY-SHIISASGSFGKNVLPRAAALLDV 140 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P-~lVL~g~T~~GrdlaprlAarL~~ 140 (354)
++++.+. ..|+|+++++|. .....|+.+.+.+..+.+..+. .+=+=++..+|.-+|--+|+....
T Consensus 158 ~~~~~a~--~aGad~i~i~DT--vG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AG 223 (526)
T TIGR00977 158 ATLATAQ--QAGADWLVLCDT--NGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAG 223 (526)
T ss_pred HHHHHHH--hCCCCeEEEecC--CCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhC
Confidence 3455555 489999999876 5677899999999988766542 244446788898888887665433
No 262
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=20.74 E-value=46 Score=30.30 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=20.1
Q ss_pred CceeCCceEEEecc-----cchhhhhh
Q 018528 287 GKIVAPELYMAFGV-----SGAIQHLA 308 (354)
Q Consensus 287 G~~V~P~lYia~GI-----SGa~QH~~ 308 (354)
|+.+-|-+||.+|+ ||.+||+-
T Consensus 163 g~~lvp~VlIgLGi~Il~esg~~~~l~ 189 (193)
T TIGR00779 163 SRWIMPIVFIGLGIYIIIENDTIQALL 189 (193)
T ss_pred CCeeeeeeEhhcCeeeeEeCCHHHHHH
Confidence 88999999999998 99999964
No 263
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.71 E-value=1e+03 Score=25.35 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEEE---EcCCC---CHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 018528 42 QSLSAVEAAKSLSDDNSVSMLL---AGSGP---SFNEAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREK 115 (354)
Q Consensus 42 ~slell~~A~~La~~~~V~avv---~G~~~---~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~ 115 (354)
.....++.|++.+ ..+.+-+ .++.. -.-+.++++. .+|+|.+++.|.- ....|+...+.+..+-+..+
T Consensus 124 n~~~~i~~ak~~G--~~v~~~i~~t~~p~~t~~~~~~~a~~l~--~~Gad~I~i~Dt~--G~~~P~~~~~lv~~lk~~~~ 197 (592)
T PRK09282 124 NMEVAIKAAKKAG--AHVQGTISYTTSPVHTIEKYVELAKELE--EMGCDSICIKDMA--GLLTPYAAYELVKALKEEVD 197 (592)
T ss_pred HHHHHHHHHHHcC--CEEEEEEEeccCCCCCHHHHHHHHHHHH--HcCCCEEEECCcC--CCcCHHHHHHHHHHHHHhCC
Confidence 3445566666654 3443222 13210 1234567776 5899998887764 55678888888887766554
Q ss_pred ccEEEeCCCCCccchHHHHHHH
Q 018528 116 YSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 116 P~lVL~g~T~~GrdlaprlAar 137 (354)
-.+=+=.++..|-.++-.+|+.
T Consensus 198 ~pi~~H~Hnt~Gla~An~laAv 219 (592)
T PRK09282 198 LPVQLHSHCTSGLAPMTYLKAV 219 (592)
T ss_pred CeEEEEEcCCCCcHHHHHHHHH
Confidence 3344446678888888887664
No 264
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.62 E-value=5.3e+02 Score=21.89 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeC-CCCCc-cchHHHHHHHcC
Q 018528 81 HPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISA-SGSFG-KNVLPRAAALLD 139 (354)
Q Consensus 81 ~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g-~T~~G-rdlaprlAarL~ 139 (354)
.+|++-....--+ -+++...++|.++.++.+.|+|++. .+..| +|+.+..-.+++
T Consensus 31 ~~G~~v~~~~~v~----Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~ 87 (152)
T cd00886 31 EAGHEVVAYEIVP----DDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLL 87 (152)
T ss_pred HcCCeeeeEEEcC----CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHh
Confidence 4787644332111 2467788888888775478888874 45555 588887766664
No 265
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.52 E-value=3.1e+02 Score=27.15 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=36.4
Q ss_pred EEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCH------------HHHHHHHHHHHHhcCccEEE
Q 018528 60 SMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIA------------EPWAKLVHMIQQREKYSHII 120 (354)
Q Consensus 60 ~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~------------e~~a~aLa~li~~~~P~lVL 120 (354)
.++++|....-..++..|+ ..|+.++.++|++..+..+. ..-++++++.+++.+|++-+
T Consensus 137 ~VlvvG~GG~Gs~ia~~La--~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v 207 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLA--AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQV 207 (376)
T ss_pred cEEEECCCHHHHHHHHHHH--HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEE
Confidence 4666787642355778887 58999999999874321111 13355666666666665433
No 266
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.51 E-value=5.6e+02 Score=26.87 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=48.2
Q ss_pred HHHHHHhhcCCCccEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcC
Q 018528 72 EAVKHAASSHPSISQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLD 139 (354)
Q Consensus 72 ~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~ 139 (354)
++++++. .+|+|++++.|. .....|+.+.+.+..+.+..+..+=+=++...|.-+|--+++...
T Consensus 162 ~~~~~~~--~~Gad~i~l~DT--vG~~~P~~v~~li~~l~~~~~v~i~~H~HND~GlA~ANslaAi~a 225 (524)
T PRK12344 162 ATLKAAA--EAGADWVVLCDT--NGGTLPHEVAEIVAEVRAAPGVPLGIHAHNDSGCAVANSLAAVEA 225 (524)
T ss_pred HHHHHHH--hCCCCeEEEccC--CCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHh
Confidence 3455555 589999998776 466789999999988877665445555778889999888877654
No 267
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=20.50 E-value=8.2e+02 Score=26.24 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=66.0
Q ss_pred ccceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEE--EEcCCC-C---HHHHHHHHhhcCCCccEEEEEeCCCCCC
Q 018528 24 RSISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSML--LAGSGP-S---FNEAVKHAASSHPSISQVLVADSDKFAY 97 (354)
Q Consensus 24 ~~~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~av--v~G~~~-~---~~~~a~~l~~~~~GaD~V~~~~~~~l~~ 97 (354)
.-++|+=+.++-|. + +.....+.++++.+ ..+.+. ..++.. . ..+.++++. .+|+|.+++.|.- ..
T Consensus 108 ~Gidv~Rifd~lnd-~-~n~~~~i~~~k~~G--~~~~~~i~yt~sp~~t~e~~~~~ak~l~--~~Gad~I~IkDta--G~ 179 (596)
T PRK14042 108 NGVDVFRVFDALND-A-RNLKVAIDAIKSHK--KHAQGAICYTTSPVHTLDNFLELGKKLA--EMGCDSIAIKDMA--GL 179 (596)
T ss_pred cCCCEEEEcccCcc-h-HHHHHHHHHHHHcC--CEEEEEEEecCCCCCCHHHHHHHHHHHH--HcCCCEEEeCCcc--cC
Confidence 33666666654322 1 23344567777776 333332 334321 1 234667776 5899988887764 45
Q ss_pred CCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHH-HcCCCc
Q 018528 98 PIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAA-LLDVSP 142 (354)
Q Consensus 98 ~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAa-rL~~~l 142 (354)
..|+...+.+.++-++.+-.+=+=.+...|-.++..+|+ ..|+-.
T Consensus 180 l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~ 225 (596)
T PRK14042 180 LTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNH 225 (596)
T ss_pred CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCE
Confidence 678888888887766554344444677888888887754 444433
No 268
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=20.49 E-value=1.2e+02 Score=27.76 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred CceEEEecccchhhhhhcc-----CCCcEEEEEcCCCCCCcccccceEEee
Q 018528 292 PELYMAFGVSGAIQHLAGM-----RDSKVIVAVNKDADAPIFQVADYGLVG 337 (354)
Q Consensus 292 P~lYia~GISGa~QH~~G~-----~~s~~IVAIN~D~~ApIf~~aDygiVg 337 (354)
.+|.|.+|-|+++.-...+ +.-..+|-||.+|. |.-..+|+.|-+
T Consensus 172 ~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~-~~~~~~~~~i~~ 221 (222)
T cd01413 172 ADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADET-PFDYIADLVIQD 221 (222)
T ss_pred CCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCC-CCCcceeEEEeC
Confidence 4788999999888755542 22345778999984 666667876654
No 269
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=20.43 E-value=2.2e+02 Score=27.51 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCC------------HHHHHHHHHHHHHhcCccEE
Q 018528 59 VSMLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPI------------AEPWAKLVHMIQQREKYSHI 119 (354)
Q Consensus 59 V~avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~------------~e~~a~aLa~li~~~~P~lV 119 (354)
-.++++|....-.++++.|+ ..|+.++.++|++..+..+ -..-+++.++.+++.+|++-
T Consensus 20 s~VLIvG~gGLG~EiaKnLa--laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~ 90 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLI--LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVP 90 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHH--HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCE
Confidence 45667776542356788887 6899999999977544322 12345666666666665433
No 270
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.43 E-value=2e+02 Score=26.90 Aligned_cols=49 Identities=20% Similarity=0.014 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHhcCccEEEeCCCCCccchHHHHHHHcCCCceee
Q 018528 97 YPIAEPWAKLVHMIQQREKYSHIISASGSFGKNVLPRAAALLDVSPITD 145 (354)
Q Consensus 97 ~~~~e~~a~aLa~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvtd 145 (354)
.+++.....++.+++.+.+.+.|+-+.++........++...++|+++-
T Consensus 49 ~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~ 97 (334)
T cd06347 49 KSDKEEAANAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITP 97 (334)
T ss_pred CCChHHHHHHHHHHhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcC
Confidence 4678888888999997778888865555555544456888899998873
No 271
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.38 E-value=6.8e+02 Score=23.48 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=13.8
Q ss_pred cEEEeCCCCCccchHHHHHHHcCCCce
Q 018528 117 SHIISASGSFGKNVLPRAAALLDVSPI 143 (354)
Q Consensus 117 ~lVL~g~T~~GrdlaprlAarL~~~lv 143 (354)
|++++|+...|--+...=|..+|.|++
T Consensus 272 d~~v~ps~~E~~~~~~~EAma~g~PvI 298 (371)
T cd04962 272 DLFLLPSEKESFGLAALEAMACGVPVV 298 (371)
T ss_pred CEEEeCCCcCCCccHHHHHHHcCCCEE
Confidence 566666554444444444444555544
No 272
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=20.37 E-value=7.3e+02 Score=23.37 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=56.6
Q ss_pred cceeEEEEEecCCc--cChHHHHHHHHHHhcCCCCcEEEEEE--cCCC-----CHHHHHHHHhhcCCCc--cEEEEEeCC
Q 018528 25 SISTLVLGEHENGS--IKSQSLSAVEAAKSLSDDNSVSMLLA--GSGP-----SFNEAVKHAASSHPSI--SQVLVADSD 93 (354)
Q Consensus 25 ~~~IlV~~E~~~g~--l~~~slell~~A~~La~~~~V~avv~--G~~~-----~~~~~a~~l~~~~~Ga--D~V~~~~~~ 93 (354)
...|+.+.-|.+.+ +-..+..-|+ +.+ ..|..+.+ |+.+ ...++-+.++ ..|+ ..|.++++|
T Consensus 37 ~sriLLviAhpdDE~mFFsPtI~~L~---~~~--~~v~iLClSnGN~dg~G~iR~kEL~ra~~--~lgi~~s~v~~l~~~ 109 (247)
T KOG3332|consen 37 ESRILLVIAHPDDESMFFSPTILYLT---SGA--CNVHILCLSNGNADGLGKIREKELHRACA--VLGIPLSNVVVLDTP 109 (247)
T ss_pred cceEEEEEeccCccccchhhHHHHHh---cCC--ccEEEEEecCCCccccchHHHHHHHHHHH--HHCCchhheEEecCC
Confidence 33487777776663 4444444443 333 56666666 3211 0233444443 3676 578888877
Q ss_pred CCCC-----CCHHHHHHHHHHHHHhcCccEEEeC
Q 018528 94 KFAY-----PIAEPWAKLVHMIQQREKYSHIISA 122 (354)
Q Consensus 94 ~l~~-----~~~e~~a~aLa~li~~~~P~lVL~g 122 (354)
.+++ .+++..+..+.+-++..+.+.|+.-
T Consensus 110 ~f~Dg~~~~Wd~~~v~~~l~~~ie~~~~~~iiTF 143 (247)
T KOG3332|consen 110 FFQDGPGEDWDPDAVASILLQHIEVLNIDTIITF 143 (247)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHccCccEEEEe
Confidence 6654 5899999999999998888877753
No 273
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=20.23 E-value=7.1e+02 Score=25.10 Aligned_cols=123 Identities=7% Similarity=0.091 Sum_probs=71.4
Q ss_pred hcCCCcccccccccc--------c-eeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCCC-------------
Q 018528 11 SKRPRCFHRPSISRS--------I-STLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSGP------------- 68 (354)
Q Consensus 11 ~~~~~~~~~~~~~~~--------~-~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~~------------- 68 (354)
+||||..+...+.+. | ++.|+.-.-++ ++.-=+.++..|.++. .++.+++.-.++
T Consensus 28 ~~~ps~~~~~~~~~~~~~~~~~~~~~~~v~~G~FdP-~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~ 104 (399)
T PRK08099 28 IKSPSAQKLEALHRFLGLEFPRQMKKIGVVFGKFYP-LHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQ 104 (399)
T ss_pred CCCccHHHHHHHHHHhCCChhhhcCcEEEEEEecCC-CCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccC
Confidence 688988887776554 3 35555543322 3444568899999988 566665543220
Q ss_pred --CHHH---HHHHHhhcCCCccEEEEE--eCCCCCC--CCHHHHHHHHHHHHHhc--CccEEEeCCCCCccchHHHHHHH
Q 018528 69 --SFNE---AVKHAASSHPSISQVLVA--DSDKFAY--PIAEPWAKLVHMIQQRE--KYSHIISASGSFGKNVLPRAAAL 137 (354)
Q Consensus 69 --~~~~---~a~~l~~~~~GaD~V~~~--~~~~l~~--~~~e~~a~aLa~li~~~--~P~lVL~g~T~~GrdlaprlAar 137 (354)
..++ ..+++. ...++|.+. ++..+.. +.-+.|.+.+.+.+.+. ++++++++....-.++ +..
T Consensus 105 ~~s~~~R~~~l~~~~---~~~~~v~v~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d~~~~----~~~ 177 (399)
T PRK08099 105 QPTVSDRLRWLLQTF---KYQKNIKIHAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQDAPQY----EEH 177 (399)
T ss_pred CCCHHHHHHHHHHHh---CCCCCEEEEecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCChHHH----HHh
Confidence 1122 333433 233445444 4423333 35567888888888764 7899999876532222 346
Q ss_pred cCCCce
Q 018528 138 LDVSPI 143 (354)
Q Consensus 138 L~~~lv 143 (354)
+++..+
T Consensus 178 ~~~~~~ 183 (399)
T PRK08099 178 LGIETV 183 (399)
T ss_pred cCCcee
Confidence 676654
No 274
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=20.22 E-value=7e+02 Score=23.09 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCC-CCcEEEEEEcCCCCHHHHHHHHhhcCCCc-cEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCccEEEe
Q 018528 44 LSAVEAAKSLSD-DNSVSMLLAGSGPSFNEAVKHAASSHPSI-SQVLVADSDKFAYPIAEPWAKLVHMIQQREKYSHIIS 121 (354)
Q Consensus 44 lell~~A~~La~-~~~V~avv~G~~~~~~~~a~~l~~~~~Ga-D~V~~~~~~~l~~~~~e~~a~aLa~li~~~~P~lVL~ 121 (354)
..++.++.++.+ ...+..+++|.++..+...+.+. ..+. +.|.... +. . . +.++++ ..|++++
T Consensus 204 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~--~~~~~~~v~~~g-~~-----~-~----~~~~~~--~ad~~v~ 268 (360)
T cd04951 204 PNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIK--ALGLSNRVKLLG-LR-----D-D----IAAYYN--AADLFVL 268 (360)
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHH--hcCCCCcEEEec-cc-----c-c----HHHHHH--hhceEEe
Confidence 345556656543 23567777776532233333333 2443 3444432 11 0 1 223333 2367777
Q ss_pred CCCCCccchHHHHHHHcCCCcee
Q 018528 122 ASGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 122 g~T~~GrdlaprlAarL~~~lvt 144 (354)
++...|--+...=|..+|.|+++
T Consensus 269 ~s~~e~~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 269 SSAWEGFGLVVAEAMACELPVVA 291 (360)
T ss_pred cccccCCChHHHHHHHcCCCEEE
Confidence 77666655556666666777663
No 275
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.22 E-value=2.6e+02 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred HHHHhcCccEEEeCCCCCccchHHHHHHHcCCCcee
Q 018528 109 MIQQREKYSHIISASGSFGKNVLPRAAALLDVSPIT 144 (354)
Q Consensus 109 ~li~~~~P~lVL~g~T~~GrdlaprlAarL~~~lvt 144 (354)
+.+++.+||+|+.++ .++ .+|.+||+|++.
T Consensus 352 ~~~~~~~pdliig~s--~~~----~~a~~lgip~~~ 381 (415)
T cd01977 352 EILEMLKPDIILTGP--RVG----ELVKKLHVPYVN 381 (415)
T ss_pred HHHHhcCCCEEEecC--ccc----hhhhhcCCCEEe
Confidence 445777999977433 222 588999999875
No 276
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.20 E-value=2e+02 Score=25.29 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=32.9
Q ss_pred EEEEcCCCCHHHHHHHHhhcCCCccEEEEEeCCCCCCCCHH-----------HHHHHHHHHHHhcCcc
Q 018528 61 MLLAGSGPSFNEAVKHAASSHPSISQVLVADSDKFAYPIAE-----------PWAKLVHMIQQREKYS 117 (354)
Q Consensus 61 avv~G~~~~~~~~a~~l~~~~~GaD~V~~~~~~~l~~~~~e-----------~~a~aLa~li~~~~P~ 117 (354)
++++|.+..-...++.++ ..|+.++.++|++..+..+-. .-++++++.+++.+|+
T Consensus 2 VlViG~GglGs~ia~~La--~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~ 67 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLA--RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF 67 (174)
T ss_pred EEEECcCHHHHHHHHHHH--HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC
Confidence 456776532245677777 589999999998764332211 2344555555555554
No 277
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=20.16 E-value=8.8e+02 Score=24.27 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=55.0
Q ss_pred ceeEEEEEecCCccChHHHHHHHHHHhcCCCCcEEEEEEcCC-----CCH--HHHHHHHhhcCCCccEEEEEeCCCCCCC
Q 018528 26 ISTLVLGEHENGSIKSQSLSAVEAAKSLSDDNSVSMLLAGSG-----PSF--NEAVKHAASSHPSISQVLVADSDKFAYP 98 (354)
Q Consensus 26 ~~IlV~~E~~~g~l~~~slell~~A~~La~~~~V~avv~G~~-----~~~--~~~a~~l~~~~~GaD~V~~~~~~~l~~~ 98 (354)
+-+=+++|..+ .+.--...|..|+++-.+..+.+++.|+= +.. .-...+.+ -..|+|-|+-+.-. ++..
T Consensus 2 ~~~Gii~eyNP--fHnGH~y~i~~Ar~~~~~d~~i~~msgdf~qRgepai~~k~~r~~~a-L~~g~D~VIelP~~-~s~q 77 (358)
T COG1323 2 KSIGIIAEYNP--FHNGHQYHINKAREEFKGDEIIAVMSGDFTQRGEPAIGHKWERKKMA-LEGGADLVIELPLE-RSGQ 77 (358)
T ss_pred CceeeeeecCc--ccccHHHHHHHHHHhccCCceEEeeecchhhcCCCccccHHHHHhhh-hhcCceEEEEcceE-EecC
Confidence 34556777644 55567888999999654445556666631 100 11222222 14799988755321 2222
Q ss_pred CHHHHHHHHHHHHHhcCccEEEeCCCCCcc
Q 018528 99 IAEPWAKLVHMIQQREKYSHIISASGSFGK 128 (354)
Q Consensus 99 ~~e~~a~aLa~li~~~~P~lVL~g~T~~Gr 128 (354)
..+-.+.--..++.+.++|-|+||+-+.+-
T Consensus 78 ~a~~fa~~av~il~~l~~~~i~fgse~~~i 107 (358)
T COG1323 78 GAPYFATRAVRILNALGGDDIAFGSPPMGI 107 (358)
T ss_pred CCchhhHHHHHHHHhcCCCeEEEeCCCCch
Confidence 233333333445556679999998876553
Done!