Query 018530
Match_columns 354
No_of_seqs 237 out of 2247
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 6.1E-55 1.3E-59 406.7 23.5 275 29-331 5-286 (336)
2 COG0656 ARA1 Aldo/keto reducta 100.0 5.8E-55 1.3E-59 399.7 22.6 242 35-309 2-248 (280)
3 COG0667 Tas Predicted oxidored 100.0 1.6E-54 3.4E-59 410.5 26.0 253 36-309 1-293 (316)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 2.1E-51 4.5E-56 395.2 26.8 259 34-309 11-316 (346)
5 COG1453 Predicted oxidoreducta 100.0 4.4E-52 9.5E-57 384.7 20.4 290 36-350 1-316 (391)
6 TIGR01293 Kv_beta voltage-depe 100.0 5E-51 1.1E-55 388.4 26.6 255 38-309 1-300 (317)
7 PRK10625 tas putative aldo-ket 100.0 2.2E-50 4.8E-55 388.3 25.8 260 36-309 1-323 (346)
8 PLN02587 L-galactose dehydroge 100.0 3.4E-50 7.4E-55 382.2 25.5 256 38-310 1-281 (314)
9 KOG1577 Aldo/keto reductase fa 100.0 1.2E-50 2.6E-55 371.3 19.7 240 38-309 6-269 (300)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 5.4E-48 1.2E-52 361.9 25.5 249 38-308 1-270 (285)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.4E-47 7.3E-52 353.6 23.0 231 46-309 1-236 (267)
12 PRK10376 putative oxidoreducta 100.0 5.6E-47 1.2E-51 356.2 24.6 247 39-309 10-272 (290)
13 PRK14863 bifunctional regulato 100.0 2.4E-46 5.3E-51 351.7 21.2 243 45-309 2-266 (292)
14 COG4989 Predicted oxidoreducta 100.0 1.5E-46 3.3E-51 330.7 15.3 247 36-337 1-259 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.2E-44 2.5E-49 337.8 22.9 237 37-309 5-246 (275)
16 PF00248 Aldo_ket_red: Aldo/ke 100.0 5.7E-45 1.2E-49 341.1 19.1 238 50-308 1-266 (283)
17 KOG1576 Predicted oxidoreducta 100.0 9.9E-41 2.1E-45 296.1 16.2 269 32-350 18-299 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 1.2E-05 2.5E-10 71.7 6.7 73 176-253 155-227 (285)
19 PRK13796 GTPase YqeH; Provisio 88.6 8.3 0.00018 37.5 12.5 144 49-209 34-180 (365)
20 PRK08392 hypothetical protein; 86.3 24 0.00051 31.5 14.9 152 76-250 15-178 (215)
21 cd03319 L-Ala-DL-Glu_epimerase 85.9 19 0.00042 34.0 13.2 157 73-258 134-291 (316)
22 COG1748 LYS9 Saccharopine dehy 84.8 5.5 0.00012 39.0 8.8 79 76-173 80-158 (389)
23 cd03315 MLE_like Muconate lact 84.5 32 0.00069 31.6 13.6 158 74-259 86-244 (265)
24 TIGR00190 thiC thiamine biosyn 83.9 18 0.00039 35.4 11.6 198 74-313 76-284 (423)
25 PRK08609 hypothetical protein; 83.1 55 0.0012 33.9 15.8 156 77-250 351-522 (570)
26 PRK00164 moaA molybdenum cofac 82.8 44 0.00096 31.7 15.0 161 70-251 47-228 (331)
27 KOG0023 Alcohol dehydrogenase, 82.0 4 8.7E-05 38.8 6.3 154 31-249 169-324 (360)
28 PRK13352 thiamine biosynthesis 80.5 22 0.00048 35.0 10.9 199 74-313 76-287 (431)
29 PRK13361 molybdenum cofactor b 79.6 58 0.0013 31.0 15.4 132 71-221 44-188 (329)
30 PRK07945 hypothetical protein; 79.2 62 0.0013 31.1 16.7 159 76-249 112-287 (335)
31 PF13746 Fer4_18: 4Fe-4S diclu 78.8 1.4 3E-05 32.0 1.8 18 328-345 51-69 (69)
32 PF03102 NeuB: NeuB family; I 78.0 13 0.00029 34.0 8.3 118 72-209 53-189 (241)
33 cd03316 MR_like Mandelate race 76.7 73 0.0016 30.5 14.6 158 74-253 140-298 (357)
34 TIGR03597 GTPase_YqeH ribosome 75.4 22 0.00047 34.5 9.6 144 49-209 28-174 (360)
35 cd03174 DRE_TIM_metallolyase D 74.9 18 0.00039 33.0 8.6 106 141-253 15-135 (265)
36 PLN02681 proline dehydrogenase 74.7 99 0.0021 31.1 14.4 170 76-257 221-413 (455)
37 KOG1576 Predicted oxidoreducta 74.2 11 0.00024 35.0 6.6 178 73-307 118-303 (342)
38 KOG1577 Aldo/keto reductase fa 73.9 1.6 3.5E-05 41.0 1.3 26 306-331 223-248 (300)
39 PRK09912 L-glyceraldehyde 3-ph 73.8 2.1 4.6E-05 41.3 2.1 26 303-328 265-290 (346)
40 cd07944 DRE_TIM_HOA_like 4-hyd 73.6 46 0.00099 30.8 10.9 104 140-252 15-128 (266)
41 COG0279 GmhA Phosphoheptose is 73.4 29 0.00063 29.9 8.5 122 75-209 28-154 (176)
42 PRK00941 acetyl-CoA decarbonyl 72.5 53 0.0011 35.3 12.0 83 167-257 241-336 (781)
43 COG2089 SpsE Sialic acid synth 72.2 75 0.0016 30.4 11.7 121 72-212 87-226 (347)
44 COG2069 CdhD CO dehydrogenase/ 72.2 39 0.00084 31.8 9.6 94 154-257 159-262 (403)
45 TIGR02910 sulfite_red_A sulfit 69.3 1.7 3.7E-05 41.7 0.3 22 328-349 302-324 (334)
46 TIGR00314 cdhA CO dehydrogenas 68.7 25 0.00055 37.5 8.7 85 167-260 237-336 (784)
47 cd01965 Nitrogenase_MoFe_beta_ 68.5 39 0.00085 33.5 9.8 105 110-221 66-187 (428)
48 TIGR02666 moaA molybdenum cofa 67.8 1.1E+02 0.0025 29.0 14.7 132 71-221 42-187 (334)
49 cd00740 MeTr MeTr subgroup of 67.2 1E+02 0.0022 28.3 13.4 109 142-259 23-132 (252)
50 PRK15408 autoinducer 2-binding 67.2 1.2E+02 0.0026 29.0 12.6 102 112-222 10-111 (336)
51 TIGR01293 Kv_beta voltage-depe 66.1 4.3 9.4E-05 38.5 2.4 26 303-328 249-274 (317)
52 cd00408 DHDPS-like Dihydrodipi 65.8 1.1E+02 0.0024 28.1 13.3 106 71-189 14-121 (281)
53 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.4 78 0.0017 29.4 10.6 151 148-310 23-189 (275)
54 PRK06740 histidinol-phosphatas 64.7 1.3E+02 0.0028 28.8 12.2 100 149-250 156-288 (331)
55 PF07021 MetW: Methionine bios 64.3 62 0.0014 28.5 9.0 153 79-259 5-172 (193)
56 TIGR03822 AblA_like_2 lysine-2 64.1 1.4E+02 0.0029 28.5 15.9 133 73-218 120-260 (321)
57 COG1139 Uncharacterized conser 62.9 2.8 6E-05 41.2 0.4 22 328-349 359-381 (459)
58 TIGR02370 pyl_corrinoid methyl 62.8 51 0.0011 29.0 8.4 150 72-247 9-164 (197)
59 COG0656 ARA1 Aldo/keto reducta 62.7 4.3 9.3E-05 38.0 1.6 23 306-328 202-224 (280)
60 KOG1575 Voltage-gated shaker-l 62.5 8 0.00017 37.1 3.4 44 266-309 263-309 (336)
61 COG0667 Tas Predicted oxidored 62.2 5.7 0.00012 37.8 2.4 25 304-328 243-267 (316)
62 PRK14461 ribosomal RNA large s 61.3 92 0.002 30.4 10.4 94 166-259 232-354 (371)
63 PRK10625 tas putative aldo-ket 61.2 5.7 0.00012 38.2 2.2 25 304-328 273-297 (346)
64 PRK08195 4-hyroxy-2-oxovalerat 60.6 1.3E+02 0.0027 29.0 11.3 157 138-310 18-184 (337)
65 cd01916 ACS_1 Acetyl-CoA synth 59.8 90 0.0019 33.4 10.8 86 166-257 203-299 (731)
66 PLN02444 HMP-P synthase 59.8 83 0.0018 32.3 9.9 144 141-313 296-442 (642)
67 PF05690 ThiG: Thiazole biosyn 59.2 46 0.001 30.3 7.4 115 48-192 8-125 (247)
68 cd01974 Nitrogenase_MoFe_beta 58.8 90 0.0019 31.1 10.4 114 95-220 64-191 (435)
69 PF00682 HMGL-like: HMGL-like 58.0 69 0.0015 28.7 8.7 102 142-249 11-124 (237)
70 PRK05692 hydroxymethylglutaryl 56.7 40 0.00086 31.6 7.0 104 142-251 23-138 (287)
71 TIGR03217 4OH_2_O_val_ald 4-hy 56.5 1.9E+02 0.0041 27.8 11.8 157 138-310 17-183 (333)
72 COG0635 HemN Coproporphyrinoge 56.4 53 0.0011 32.6 8.1 59 142-202 201-276 (416)
73 PRK13958 N-(5'-phosphoribosyl) 56.3 32 0.0007 30.6 6.0 66 154-226 16-83 (207)
74 PF01964 ThiC: ThiC family; I 56.1 81 0.0018 31.1 9.0 195 73-313 74-283 (420)
75 PLN02587 L-galactose dehydroge 56.0 9.3 0.0002 36.1 2.7 30 299-328 225-254 (314)
76 PRK11565 dkgA 2,5-diketo-D-glu 55.7 6.6 0.00014 36.5 1.6 23 306-328 200-222 (275)
77 COG0422 ThiC Thiamine biosynth 55.3 2.1E+02 0.0046 28.0 12.5 195 73-313 76-285 (432)
78 COG1453 Predicted oxidoreducta 55.2 3.5 7.5E-05 39.8 -0.4 23 327-349 351-374 (391)
79 cd07943 DRE_TIM_HOA 4-hydroxy- 54.7 84 0.0018 28.8 8.8 104 141-252 18-131 (263)
80 PRK15055 anaerobic sulfite red 54.6 4.5 9.8E-05 39.0 0.3 22 328-349 308-330 (344)
81 PRK05588 histidinol-phosphatas 54.4 1.7E+02 0.0037 26.6 15.4 84 76-172 17-103 (255)
82 PRK09856 fructoselysine 3-epim 54.2 1.6E+02 0.0034 26.8 10.6 22 237-258 94-115 (275)
83 PRK14457 ribosomal RNA large s 54.1 2.1E+02 0.0045 27.7 11.6 139 111-258 165-331 (345)
84 cd01966 Nitrogenase_NifN_1 Nit 54.1 63 0.0014 32.0 8.3 109 110-221 66-189 (417)
85 PRK12331 oxaloacetate decarbox 53.7 1.5E+02 0.0032 29.8 10.9 105 143-251 24-141 (448)
86 PRK15033 tricarballylate utili 53.5 5.3 0.00011 39.0 0.6 22 327-348 67-95 (389)
87 cd02070 corrinoid_protein_B12- 52.9 1.6E+02 0.0035 25.8 10.6 149 73-247 9-162 (201)
88 PRK14462 ribosomal RNA large s 52.7 1.7E+02 0.0037 28.4 10.8 90 168-259 226-340 (356)
89 COG0135 TrpF Phosphoribosylant 52.6 75 0.0016 28.4 7.7 80 156-250 19-102 (208)
90 COG3623 SgaU Putative L-xylulo 52.2 38 0.00083 30.8 5.7 79 43-136 65-156 (287)
91 TIGR03278 methan_mark_10 putat 51.7 2.5E+02 0.0055 27.8 13.0 167 142-316 54-244 (404)
92 PRK10376 putative oxidoreducta 51.2 7.9 0.00017 36.2 1.3 24 305-328 223-246 (290)
93 PRK05283 deoxyribose-phosphate 51.0 1.1E+02 0.0024 28.3 8.7 80 76-164 148-227 (257)
94 PRK09284 thiamine biosynthesis 50.9 1.3E+02 0.0029 30.9 9.7 198 75-313 232-437 (607)
95 PRK11172 dkgB 2,5-diketo-D-glu 50.9 7.8 0.00017 35.8 1.2 23 306-328 190-212 (267)
96 TIGR00683 nanA N-acetylneurami 50.7 2.1E+02 0.0046 26.7 13.3 30 71-100 17-47 (290)
97 PF15221 LEP503: Lens epitheli 50.7 10 0.00022 26.0 1.4 31 27-57 6-36 (61)
98 PLN02746 hydroxymethylglutaryl 50.2 94 0.002 30.1 8.5 98 147-252 69-181 (347)
99 PRK07534 methionine synthase I 50.2 2.4E+02 0.0052 27.1 18.2 229 74-310 44-295 (336)
100 PF00682 HMGL-like: HMGL-like 50.0 1.9E+02 0.0041 25.8 14.7 165 72-258 11-195 (237)
101 PRK07328 histidinol-phosphatas 49.2 2.1E+02 0.0046 26.2 16.0 113 77-196 20-159 (269)
102 cd04742 NPD_FabD 2-Nitropropan 48.9 87 0.0019 31.1 8.2 72 181-254 29-103 (418)
103 TIGR00542 hxl6Piso_put hexulos 48.3 2.1E+02 0.0045 26.2 10.5 135 134-320 4-150 (279)
104 PLN02363 phosphoribosylanthran 48.2 54 0.0012 30.3 6.3 74 142-226 55-130 (256)
105 TIGR01862 N2-ase-Ialpha nitrog 48.0 2.2E+02 0.0048 28.4 11.2 104 110-220 102-221 (443)
106 COG3215 PilZ Tfp pilus assembl 47.6 47 0.001 26.1 4.8 73 73-157 18-106 (117)
107 TIGR02668 moaA_archaeal probab 47.5 2.4E+02 0.0052 26.2 13.9 128 71-218 39-179 (302)
108 TIGR00048 radical SAM enzyme, 46.8 1.5E+02 0.0033 28.7 9.5 92 166-259 219-335 (355)
109 TIGR01428 HAD_type_II 2-haloal 46.6 71 0.0015 27.5 6.7 64 147-211 61-128 (198)
110 PRK14459 ribosomal RNA large s 46.2 3E+02 0.0064 27.0 11.7 94 165-258 241-360 (373)
111 COG1152 CdhA CO dehydrogenase/ 45.9 87 0.0019 32.4 7.6 74 178-256 251-334 (772)
112 PRK00208 thiG thiazole synthas 45.7 2.5E+02 0.0053 25.9 13.9 105 140-251 71-180 (250)
113 TIGR01278 DPOR_BchB light-inde 45.5 2.8E+02 0.006 28.3 11.6 105 110-221 70-193 (511)
114 PF01619 Pro_dh: Proline dehyd 45.1 70 0.0015 30.3 6.8 165 75-257 92-284 (313)
115 PRK01222 N-(5'-phosphoribosyl) 44.7 57 0.0012 29.0 5.8 65 155-226 19-85 (210)
116 PRK05414 urocanate hydratase; 44.5 50 0.0011 33.5 5.7 106 110-227 151-268 (556)
117 TIGR01228 hutU urocanate hydra 44.5 48 0.001 33.5 5.5 106 110-227 142-259 (545)
118 PRK14476 nitrogenase molybdenu 44.5 1.1E+02 0.0024 30.7 8.4 112 96-219 72-198 (455)
119 TIGR01928 menC_lowGC/arch o-su 44.3 2.8E+02 0.0062 26.2 14.5 153 75-259 134-287 (324)
120 COG1140 NarY Nitrate reductase 44.2 9.4 0.0002 36.9 0.7 54 189-248 263-317 (513)
121 PRK09058 coproporphyrinogen II 44.1 3.4E+02 0.0074 27.1 14.2 109 141-261 226-334 (449)
122 TIGR00126 deoC deoxyribose-pho 44.0 2.2E+02 0.0047 25.4 9.4 74 75-162 132-205 (211)
123 COG2896 MoaA Molybdenum cofact 43.8 3E+02 0.0065 26.4 11.4 126 72-220 43-184 (322)
124 cd00308 enolase_like Enolase-s 43.7 1.3E+02 0.0028 26.8 8.1 88 163-258 120-208 (229)
125 PF13407 Peripla_BP_4: Peripla 43.6 72 0.0016 28.4 6.4 77 144-225 13-89 (257)
126 cd02069 methionine_synthase_B1 43.2 1.8E+02 0.0038 26.0 8.7 23 72-94 12-34 (213)
127 PRK14453 chloramphenicol/florf 42.9 2.2E+02 0.0047 27.5 9.8 99 161-259 203-332 (347)
128 KOG3131 Uncharacterized conser 42.9 2.6E+02 0.0057 25.6 9.5 113 126-258 25-151 (281)
129 PRK07329 hypothetical protein; 42.7 2.6E+02 0.0056 25.3 14.2 22 298-319 221-242 (246)
130 TIGR02484 CitB CitB domain pro 42.7 8.4 0.00018 37.4 0.1 21 328-348 49-76 (372)
131 TIGR03290 CoB_CoM_SS_C CoB--Co 42.4 8.4 0.00018 32.1 0.0 22 328-349 47-69 (144)
132 CHL00076 chlB photochlorophyll 42.4 3.9E+02 0.0085 27.3 12.1 140 110-256 70-248 (513)
133 PRK09545 znuA high-affinity zi 42.1 3E+02 0.0066 26.0 10.9 52 201-259 237-288 (311)
134 PF02638 DUF187: Glycosyl hydr 42.0 2.6E+02 0.0056 26.5 10.1 20 237-256 74-93 (311)
135 PRK14463 ribosomal RNA large s 41.9 2.3E+02 0.0049 27.4 9.8 92 166-259 211-327 (349)
136 cd01968 Nitrogenase_NifE_I Nit 41.7 3.5E+02 0.0076 26.5 12.1 112 93-220 63-188 (410)
137 PRK00507 deoxyribose-phosphate 41.7 1.3E+02 0.0028 27.0 7.6 75 73-161 134-208 (221)
138 KOG1549 Cysteine desulfurase N 41.5 1.3E+02 0.0028 29.9 8.0 105 147-259 118-224 (428)
139 PRK14460 ribosomal RNA large s 41.5 2.7E+02 0.0058 27.0 10.3 170 72-259 130-334 (354)
140 COG0820 Predicted Fe-S-cluster 41.5 2.8E+02 0.006 26.9 10.1 92 166-260 216-333 (349)
141 cd00950 DHDPS Dihydrodipicolin 41.1 2.9E+02 0.0063 25.4 12.1 31 70-100 16-46 (284)
142 TIGR03586 PseI pseudaminic aci 40.8 3.4E+02 0.0073 26.1 11.2 133 73-229 75-226 (327)
143 COG1149 MinD superfamily P-loo 40.7 70 0.0015 29.8 5.7 93 154-257 155-250 (284)
144 TIGR03569 NeuB_NnaB N-acetylne 40.6 3.4E+02 0.0073 26.1 11.4 135 72-228 73-226 (329)
145 cd00739 DHPS DHPS subgroup of 40.6 2.9E+02 0.0064 25.3 10.3 107 79-201 87-209 (257)
146 cd03322 rpsA The starvation se 40.5 3.4E+02 0.0075 26.1 14.4 146 75-255 128-274 (361)
147 COG1751 Uncharacterized conser 40.4 1.4E+02 0.003 25.4 6.8 90 166-258 2-95 (186)
148 cd04740 DHOD_1B_like Dihydroor 40.1 3.1E+02 0.0067 25.4 13.3 157 74-247 101-286 (296)
149 PRK11194 ribosomal RNA large s 40.0 3.1E+02 0.0066 26.9 10.4 89 167-257 221-337 (372)
150 PRK05985 cytosine deaminase; P 39.9 3.6E+02 0.0077 26.1 14.8 172 75-258 98-277 (391)
151 TIGR03849 arch_ComA phosphosul 39.7 2.2E+02 0.0047 26.0 8.6 101 148-251 11-118 (237)
152 cd00405 PRAI Phosphoribosylant 39.3 1.6E+02 0.0035 25.6 7.9 40 163-205 74-113 (203)
153 COG2987 HutU Urocanate hydrata 39.2 54 0.0012 32.7 4.9 107 110-227 151-268 (561)
154 PRK13210 putative L-xylulose 5 38.8 3E+02 0.0066 25.0 10.8 106 148-256 19-155 (284)
155 COG4464 CapC Capsular polysacc 38.8 1.2E+02 0.0027 27.3 6.7 33 70-102 15-47 (254)
156 PRK00730 rnpA ribonuclease P; 38.6 1.5E+02 0.0033 24.6 6.9 62 125-189 46-110 (138)
157 PRK00912 ribonuclease P protei 38.1 2.9E+02 0.0063 24.7 9.5 145 75-251 16-172 (237)
158 PRK09282 pyruvate carboxylase 38.0 3E+02 0.0065 28.8 10.6 100 150-252 30-142 (592)
159 PRK07535 methyltetrahydrofolat 36.9 3.4E+02 0.0074 25.0 13.9 162 143-319 23-192 (261)
160 PF01175 Urocanase: Urocanase; 36.8 82 0.0018 32.0 5.9 88 126-227 156-258 (546)
161 cd06543 GH18_PF-ChiA-like PF-C 36.8 3.6E+02 0.0079 25.3 12.3 170 73-259 88-266 (294)
162 PRK04452 acetyl-CoA decarbonyl 36.7 1.5E+02 0.0032 28.4 7.4 150 153-319 83-239 (319)
163 cd02930 DCR_FMN 2,4-dienoyl-Co 36.1 4E+02 0.0087 25.6 12.2 18 77-94 139-156 (353)
164 cd04734 OYE_like_3_FMN Old yel 35.8 4E+02 0.0087 25.5 12.5 18 78-95 144-161 (343)
165 TIGR01093 aroD 3-dehydroquinat 35.7 3.2E+02 0.007 24.4 11.0 68 142-216 75-148 (228)
166 cd00954 NAL N-Acetylneuraminic 35.7 3.6E+02 0.0079 25.0 13.4 116 140-261 16-144 (288)
167 cd01973 Nitrogenase_VFe_beta_l 35.7 3.9E+02 0.0085 26.8 10.7 113 95-220 65-192 (454)
168 PF00148 Oxidored_nitro: Nitro 35.6 1.8E+02 0.0038 28.3 8.2 141 110-256 59-227 (398)
169 PF03279 Lip_A_acyltrans: Bact 35.4 3.2E+02 0.0069 25.2 9.6 84 78-192 110-193 (295)
170 PRK14455 ribosomal RNA large s 35.3 2.8E+02 0.0061 26.9 9.3 92 166-259 223-339 (356)
171 PRK11168 glpC sn-glycerol-3-ph 35.3 15 0.00033 35.8 0.6 24 325-348 52-76 (396)
172 PRK12581 oxaloacetate decarbox 34.9 4.4E+02 0.0095 26.7 10.8 120 77-221 220-349 (468)
173 PF04748 Polysacc_deac_2: Dive 34.9 3E+02 0.0066 24.5 8.9 129 72-217 71-203 (213)
174 PF02679 ComA: (2R)-phospho-3- 34.8 86 0.0019 28.8 5.3 101 148-251 24-131 (244)
175 PRK14477 bifunctional nitrogen 34.8 2.7E+02 0.0058 30.8 10.0 109 110-221 556-676 (917)
176 PRK14464 ribosomal RNA large s 34.7 2.2E+02 0.0048 27.5 8.4 84 174-259 223-319 (344)
177 smart00633 Glyco_10 Glycosyl h 34.5 1.6E+02 0.0035 26.8 7.2 107 144-253 102-225 (254)
178 TIGR01210 conserved hypothetic 34.4 4E+02 0.0086 25.2 10.1 27 180-206 117-145 (313)
179 TIGR03379 glycerol3P_GlpC glyc 34.3 15 0.00032 36.0 0.3 24 326-349 51-75 (397)
180 COG1167 ARO8 Transcriptional r 34.1 4.7E+02 0.01 26.2 11.1 116 113-251 141-265 (459)
181 cd00952 CHBPH_aldolase Trans-o 33.6 4.1E+02 0.009 25.0 13.1 112 141-261 25-151 (309)
182 cd00952 CHBPH_aldolase Trans-o 33.6 4.1E+02 0.009 25.0 12.7 50 71-120 25-74 (309)
183 TIGR01285 nifN nitrogenase mol 33.6 1.5E+02 0.0032 29.6 7.3 109 110-220 76-198 (432)
184 COG1152 CdhA CO dehydrogenase/ 33.3 17 0.00037 37.2 0.6 27 322-348 433-460 (772)
185 COG2159 Predicted metal-depend 33.2 1.6E+02 0.0035 27.7 7.1 102 155-256 55-167 (293)
186 cd07948 DRE_TIM_HCS Saccharomy 33.1 3.9E+02 0.0085 24.6 9.6 94 148-252 24-131 (262)
187 PRK12928 lipoyl synthase; Prov 33.1 4.2E+02 0.009 24.9 11.1 80 175-257 186-282 (290)
188 PRK08776 cystathionine gamma-s 32.7 4.4E+02 0.0094 25.9 10.4 13 205-217 164-176 (405)
189 PRK14017 galactonate dehydrata 32.6 4.7E+02 0.01 25.4 13.7 158 74-255 125-288 (382)
190 TIGR00674 dapA dihydrodipicoli 32.5 4.1E+02 0.0088 24.6 12.5 30 70-99 14-43 (285)
191 COG2179 Predicted hydrolase of 32.5 2.3E+02 0.005 24.5 7.1 84 154-248 22-109 (175)
192 TIGR01496 DHPS dihydropteroate 32.3 4E+02 0.0087 24.4 12.0 108 79-201 86-207 (257)
193 cd03321 mandelate_racemase Man 32.0 4.6E+02 0.01 25.1 12.2 150 75-251 143-293 (355)
194 PF00248 Aldo_ket_red: Aldo/ke 32.0 24 0.00053 32.4 1.4 26 303-328 216-241 (283)
195 TIGR00273 iron-sulfur cluster- 31.6 13 0.00029 37.0 -0.4 22 328-349 344-366 (432)
196 cd00954 NAL N-Acetylneuraminic 31.6 4.2E+02 0.0092 24.5 13.4 30 71-100 17-47 (288)
197 PRK11274 glcF glycolate oxidas 31.5 17 0.00036 35.8 0.2 21 328-348 74-95 (407)
198 cd02932 OYE_YqiM_FMN Old yello 31.5 4.6E+02 0.01 24.9 10.5 80 127-210 220-310 (336)
199 PRK14466 ribosomal RNA large s 31.4 4.6E+02 0.0099 25.4 9.9 93 165-259 210-327 (345)
200 TIGR01284 alt_nitrog_alph nitr 31.3 5.5E+02 0.012 25.7 11.5 140 110-255 109-279 (457)
201 COG2089 SpsE Sialic acid synth 31.0 2.4E+02 0.0053 27.1 7.7 22 237-259 94-115 (347)
202 CHL00162 thiG thiamin biosynth 30.8 3.1E+02 0.0068 25.4 8.1 53 140-192 79-139 (267)
203 COG2256 MGS1 ATPase related to 30.7 3.7E+02 0.0079 26.8 9.0 104 79-202 37-143 (436)
204 TIGR02026 BchE magnesium-proto 30.6 5.8E+02 0.013 25.8 12.5 73 176-251 224-302 (497)
205 PRK05950 sdhB succinate dehydr 30.1 19 0.00042 32.5 0.3 22 328-349 199-221 (232)
206 TIGR01422 phosphonatase phosph 29.9 2.3E+02 0.0051 25.4 7.5 71 176-247 101-171 (253)
207 PRK13478 phosphonoacetaldehyde 29.8 2.3E+02 0.0051 25.7 7.6 70 177-247 104-173 (267)
208 cd03325 D-galactonate_dehydrat 29.4 5.1E+02 0.011 24.8 14.3 83 163-253 202-285 (352)
209 cd03318 MLE Muconate Lactonizi 29.4 1.6E+02 0.0035 28.3 6.7 74 179-257 227-301 (365)
210 cd01017 AdcA Metal binding pro 29.3 4.1E+02 0.0089 24.5 9.2 51 201-258 205-255 (282)
211 cd01967 Nitrogenase_MoFe_alpha 29.3 5.4E+02 0.012 25.0 10.6 103 110-219 72-189 (406)
212 PRK08446 coproporphyrinogen II 29.0 4.5E+02 0.0097 25.2 9.6 88 73-200 132-229 (350)
213 TIGR02932 vnfK_nitrog V-contai 28.9 3.8E+02 0.0083 26.9 9.4 114 95-221 68-197 (457)
214 KOG2264 Exostosin EXT1L [Signa 28.9 1.3E+02 0.0028 31.0 5.8 54 108-173 633-687 (907)
215 PRK14829 undecaprenyl pyrophos 28.9 91 0.002 28.6 4.5 90 237-326 49-142 (243)
216 PF13534 Fer4_17: 4Fe-4S diclu 28.8 12 0.00027 25.8 -0.9 18 329-346 2-20 (61)
217 TIGR00735 hisF imidazoleglycer 28.7 4.5E+02 0.0097 23.9 12.0 89 153-249 162-253 (254)
218 COG2062 SixA Phosphohistidine 28.7 3.1E+02 0.0067 23.5 7.4 83 111-208 35-117 (163)
219 KOG0259 Tyrosine aminotransfer 28.7 5.9E+02 0.013 25.2 14.7 55 75-136 81-136 (447)
220 PRK03170 dihydrodipicolinate s 28.5 4.8E+02 0.01 24.1 12.9 31 70-100 17-47 (292)
221 cd07940 DRE_TIM_IPMS 2-isoprop 28.5 4.6E+02 0.01 24.0 11.6 150 140-310 15-183 (268)
222 TIGR00398 metG methionyl-tRNA 28.1 3.1E+02 0.0068 27.9 8.8 46 145-192 68-113 (530)
223 PRK10508 hypothetical protein; 27.8 83 0.0018 30.2 4.2 42 142-187 286-327 (333)
224 PLN03228 methylthioalkylmalate 27.8 6.7E+02 0.015 25.6 11.6 110 142-258 103-234 (503)
225 cd03327 MR_like_2 Mandelate ra 27.8 5.4E+02 0.012 24.5 13.4 158 74-253 121-280 (341)
226 TIGR00676 fadh2 5,10-methylene 27.8 4.9E+02 0.011 24.0 16.0 159 75-260 15-193 (272)
227 PF10566 Glyco_hydro_97: Glyco 27.7 2.2E+02 0.0048 26.5 6.9 59 199-257 28-97 (273)
228 PRK09875 putative hydrolase; P 27.7 5.2E+02 0.011 24.3 13.1 29 74-103 33-62 (292)
229 PLN02321 2-isopropylmalate syn 27.6 5.4E+02 0.012 27.2 10.3 149 148-310 110-280 (632)
230 COG2102 Predicted ATPases of P 27.6 4.5E+02 0.0097 23.8 8.4 73 176-259 75-148 (223)
231 COG0247 GlpC Fe-S oxidoreducta 27.4 20 0.00043 34.7 -0.1 22 328-349 59-81 (388)
232 PF14871 GHL6: Hypothetical gl 27.3 50 0.0011 27.1 2.3 21 236-256 47-67 (132)
233 TIGR00655 PurU formyltetrahydr 27.3 5.2E+02 0.011 24.1 14.4 141 77-252 14-166 (280)
234 PRK09485 mmuM homocysteine met 27.2 5.3E+02 0.011 24.2 19.9 226 74-308 45-302 (304)
235 TIGR03699 mena_SCO4550 menaqui 27.2 5.5E+02 0.012 24.4 12.5 128 72-216 72-223 (340)
236 COG0218 Predicted GTPase [Gene 26.9 4.5E+02 0.0098 23.3 12.5 130 33-189 60-198 (200)
237 TIGR02534 mucon_cyclo muconate 26.9 1.7E+02 0.0037 28.3 6.3 75 179-258 226-301 (368)
238 PRK06015 keto-hydroxyglutarate 26.6 2.4E+02 0.0051 25.1 6.6 89 142-251 13-102 (201)
239 COG0145 HyuA N-methylhydantoin 26.6 3.8E+02 0.0083 28.5 9.1 91 70-172 134-242 (674)
240 PRK13209 L-xylulose 5-phosphat 26.5 4.9E+02 0.011 23.6 11.0 17 237-253 103-119 (283)
241 PRK13803 bifunctional phosphor 26.4 3.1E+02 0.0068 28.7 8.5 75 143-227 12-88 (610)
242 PF01297 TroA: Periplasmic sol 26.4 4.8E+02 0.01 23.5 10.0 59 193-258 173-234 (256)
243 PF01081 Aldolase: KDPG and KH 26.3 2.5E+02 0.0054 24.8 6.7 88 143-251 18-106 (196)
244 PRK12323 DNA polymerase III su 26.2 3.2E+02 0.0068 29.1 8.3 70 142-212 104-175 (700)
245 COG1560 HtrB Lauroyl/myristoyl 26.2 5.7E+02 0.012 24.3 9.5 90 77-198 111-200 (308)
246 PRK13505 formate--tetrahydrofo 26.2 1.4E+02 0.003 30.8 5.6 56 203-259 359-414 (557)
247 PRK15072 bifunctional D-altron 26.0 2.8E+02 0.006 27.3 7.7 85 163-255 232-317 (404)
248 PRK10658 putative alpha-glucos 25.8 3.2E+02 0.0069 29.0 8.4 90 161-253 234-345 (665)
249 PRK14465 ribosomal RNA large s 25.7 6.1E+02 0.013 24.5 10.8 91 166-258 216-330 (342)
250 PRK12385 fumarate reductase ir 25.7 25 0.00055 32.2 0.3 22 328-349 204-226 (244)
251 PRK09061 D-glutamate deacylase 25.6 7.2E+02 0.016 25.3 13.2 114 74-201 168-286 (509)
252 PRK14863 bifunctional regulato 25.6 41 0.00089 31.5 1.7 26 303-328 215-240 (292)
253 PRK11840 bifunctional sulfur c 25.6 4.5E+02 0.0098 25.2 8.6 70 140-210 145-216 (326)
254 PRK05826 pyruvate kinase; Prov 25.4 7.2E+02 0.016 25.1 11.2 90 78-192 176-274 (465)
255 PF14691 Fer4_20: Dihydroprymi 25.4 11 0.00024 30.1 -1.9 17 334-350 31-48 (111)
256 COG2055 Malate/L-lactate dehyd 25.2 5.2E+02 0.011 25.0 9.0 95 141-252 5-114 (349)
257 PRK05283 deoxyribose-phosphate 25.2 3.6E+02 0.0079 24.9 7.7 141 72-228 23-172 (257)
258 PLN02389 biotin synthase 25.0 6.6E+02 0.014 24.6 13.5 126 70-213 114-252 (379)
259 TIGR02080 O_succ_thio_ly O-suc 25.0 6.4E+02 0.014 24.4 10.2 13 205-217 155-167 (382)
260 PRK12268 methionyl-tRNA synthe 24.9 2.9E+02 0.0063 28.3 8.0 102 91-200 6-127 (556)
261 TIGR00384 dhsB succinate dehyd 24.9 25 0.00055 31.5 0.1 22 328-349 195-217 (220)
262 cd07943 DRE_TIM_HOA 4-hydroxy- 24.7 5.4E+02 0.012 23.5 17.0 128 72-216 19-154 (263)
263 PLN02951 Molybderin biosynthes 24.7 6.5E+02 0.014 24.4 15.6 138 72-230 90-240 (373)
264 TIGR01283 nifE nitrogenase mol 24.7 7.1E+02 0.015 24.8 11.0 102 110-220 106-227 (456)
265 PRK13753 dihydropteroate synth 24.5 5.9E+02 0.013 23.8 13.7 100 143-256 23-129 (279)
266 KOG0922 DEAH-box RNA helicase 24.5 80 0.0017 33.0 3.6 41 151-193 411-451 (674)
267 PRK14467 ribosomal RNA large s 24.5 6.5E+02 0.014 24.3 11.7 100 161-260 207-332 (348)
268 PF01261 AP_endonuc_2: Xylose 24.5 4.3E+02 0.0093 22.2 8.0 52 204-255 28-93 (213)
269 TIGR01182 eda Entner-Doudoroff 24.4 3.2E+02 0.0069 24.3 7.0 95 142-263 17-112 (204)
270 PRK14847 hypothetical protein; 24.4 5.4E+02 0.012 24.8 9.0 111 142-258 51-182 (333)
271 COG1144 Pyruvate:ferredoxin ox 24.3 28 0.0006 26.7 0.2 23 324-351 63-86 (91)
272 PRK10076 pyruvate formate lyas 24.3 5.1E+02 0.011 23.0 9.8 67 161-228 88-169 (213)
273 TIGR02026 BchE magnesium-proto 24.2 7.5E+02 0.016 25.0 12.3 46 142-190 222-268 (497)
274 PRK04147 N-acetylneuraminate l 24.2 5.8E+02 0.013 23.7 12.6 31 70-100 19-50 (293)
275 TIGR01290 nifB nitrogenase cof 24.0 6.4E+02 0.014 25.2 9.9 112 141-260 59-201 (442)
276 PRK14456 ribosomal RNA large s 23.9 5E+02 0.011 25.3 8.9 91 166-258 238-354 (368)
277 TIGR03772 anch_rpt_subst ancho 23.8 7.8E+02 0.017 25.0 11.7 20 237-256 411-430 (479)
278 PRK15108 biotin synthase; Prov 23.7 6.4E+02 0.014 24.2 9.6 112 142-257 76-195 (345)
279 PLN02428 lipoic acid synthase 23.7 6.8E+02 0.015 24.3 14.0 164 73-257 131-325 (349)
280 PRK05660 HemN family oxidoredu 23.7 4.2E+02 0.0091 25.7 8.4 88 73-200 141-241 (378)
281 PRK13210 putative L-xylulose 5 23.7 5.5E+02 0.012 23.2 10.5 54 199-252 48-113 (284)
282 cd00423 Pterin_binding Pterin 23.5 5.7E+02 0.012 23.3 13.0 160 142-313 21-193 (258)
283 PRK06256 biotin synthase; Vali 23.5 6.3E+02 0.014 23.8 12.4 125 71-215 90-228 (336)
284 PRK14478 nitrogenase molybdenu 23.5 7.7E+02 0.017 24.8 11.5 104 110-220 104-221 (475)
285 COG5310 Homospermidine synthas 23.4 6E+02 0.013 24.6 8.8 173 47-250 15-210 (481)
286 PRK01313 rnpA ribonuclease P; 23.3 3.8E+02 0.0083 21.9 6.8 60 126-188 48-113 (129)
287 TIGR00433 bioB biotin syntheta 23.2 5.9E+02 0.013 23.4 12.0 20 73-92 63-82 (296)
288 PLN00191 enolase 23.0 7E+02 0.015 25.2 9.9 97 143-252 296-394 (457)
289 COG3693 XynA Beta-1,4-xylanase 23.0 2E+02 0.0043 27.6 5.6 55 176-230 203-264 (345)
290 cd03174 DRE_TIM_metallolyase D 22.9 5.5E+02 0.012 23.0 15.1 130 72-217 16-160 (265)
291 TIGR00035 asp_race aspartate r 22.9 4.8E+02 0.01 23.2 8.1 62 143-205 15-89 (229)
292 PRK07570 succinate dehydrogena 22.9 30 0.00064 31.9 0.2 23 328-350 213-236 (250)
293 PRK13984 putative oxidoreducta 22.7 30 0.00064 36.0 0.1 22 328-349 186-208 (604)
294 PRK10550 tRNA-dihydrouridine s 22.7 6.6E+02 0.014 23.8 12.6 128 74-210 74-214 (312)
295 TIGR00314 cdhA CO dehydrogenas 22.6 21 0.00045 38.2 -1.0 24 326-349 436-460 (784)
296 COG1751 Uncharacterized conser 22.6 3.1E+02 0.0067 23.4 6.0 74 73-161 12-85 (186)
297 COG1064 AdhP Zn-dependent alco 22.6 3.5E+02 0.0075 26.2 7.3 78 163-251 230-308 (339)
298 TIGR00238 KamA family protein. 22.6 6.8E+02 0.015 23.9 13.3 139 74-223 144-288 (331)
299 PRK00133 metG methionyl-tRNA s 22.5 3.9E+02 0.0085 28.3 8.5 98 91-192 5-116 (673)
300 PF13289 SIR2_2: SIR2-like dom 22.4 3.1E+02 0.0068 21.7 6.3 70 177-250 74-143 (143)
301 TIGR01502 B_methylAsp_ase meth 22.3 5.5E+02 0.012 25.5 8.9 84 167-255 267-357 (408)
302 cd06300 PBP1_ABC_sugar_binding 22.3 5.5E+02 0.012 22.7 9.9 75 143-221 13-90 (272)
303 PF13378 MR_MLE_C: Enolase C-t 22.2 1.1E+02 0.0023 23.7 3.3 55 198-258 3-57 (111)
304 KOG0369 Pyruvate carboxylase [ 22.0 9.4E+02 0.02 25.8 10.5 149 75-258 43-196 (1176)
305 PF06415 iPGM_N: BPG-independe 21.9 3.2E+02 0.007 24.7 6.6 23 287-309 168-190 (223)
306 TIGR00126 deoC deoxyribose-pho 21.7 5.8E+02 0.012 22.7 15.8 136 72-228 15-157 (211)
307 PRK14040 oxaloacetate decarbox 21.5 5.2E+02 0.011 27.0 8.9 95 148-251 29-142 (593)
308 PRK14839 undecaprenyl pyrophos 21.5 1.3E+02 0.0028 27.5 4.0 90 237-326 44-137 (239)
309 TIGR01286 nifK nitrogenase mol 21.5 6.5E+02 0.014 25.8 9.5 116 93-221 119-252 (515)
310 KOG1579 Homocysteine S-methylt 21.3 7.2E+02 0.016 23.7 13.9 227 74-309 52-313 (317)
311 cd01971 Nitrogenase_VnfN_like 21.2 6.6E+02 0.014 24.8 9.4 106 110-222 71-192 (427)
312 COG2022 ThiG Uncharacterized e 21.2 3.5E+02 0.0077 24.7 6.5 53 140-192 78-132 (262)
313 PF13380 CoA_binding_2: CoA bi 21.1 2.8E+02 0.006 22.0 5.5 15 237-251 93-107 (116)
314 PRK03459 rnpA ribonuclease P; 21.1 4.4E+02 0.0096 21.2 6.9 62 125-189 48-114 (122)
315 cd03323 D-glucarate_dehydratas 21.1 7.9E+02 0.017 24.0 13.3 151 74-255 169-321 (395)
316 PRK02399 hypothetical protein; 20.9 8.1E+02 0.018 24.3 9.5 135 149-320 199-334 (406)
317 PRK02910 light-independent pro 20.9 9E+02 0.02 24.7 10.5 139 110-256 70-243 (519)
318 cd06311 PBP1_ABC_sugar_binding 20.6 6E+02 0.013 22.5 9.6 75 144-221 14-90 (274)
319 cd03329 MR_like_4 Mandelate ra 20.5 7.7E+02 0.017 23.7 15.1 154 73-253 143-299 (368)
320 cd06660 Aldo_ket_red Aldo-keto 20.4 55 0.0012 30.0 1.5 24 305-328 222-245 (285)
321 PRK14841 undecaprenyl pyrophos 20.4 1.4E+02 0.0031 27.1 4.1 90 237-326 38-131 (233)
322 cd04728 ThiG Thiazole synthase 20.4 6.8E+02 0.015 23.0 15.7 105 140-251 71-180 (248)
323 PRK09427 bifunctional indole-3 20.4 2.5E+02 0.0054 28.3 6.1 64 155-227 273-338 (454)
324 PRK07003 DNA polymerase III su 20.3 3.5E+02 0.0076 29.4 7.3 67 142-209 99-167 (830)
325 PRK04820 rnpA ribonuclease P; 20.2 3.8E+02 0.0081 22.4 6.3 62 126-189 49-114 (145)
326 cd03324 rTSbeta_L-fuconate_deh 20.1 8.5E+02 0.018 24.1 13.1 151 75-253 198-352 (415)
327 COG1245 Predicted ATPase, RNas 20.1 37 0.0008 34.2 0.2 28 327-354 50-83 (591)
328 PRK09140 2-dehydro-3-deoxy-6-p 20.0 6.1E+02 0.013 22.4 11.9 105 72-211 19-123 (206)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=6.1e-55 Score=406.68 Aligned_cols=275 Identities=31% Similarity=0.429 Sum_probs=230.1
Q ss_pred ccccccccceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCc
Q 018530 29 FATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAIN 108 (354)
Q Consensus 29 ~~~~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~ 108 (354)
..+....|.|+++|++|++||++|||||.+.. |+ +. .+++++.+++++|+++|+||||||++||+|.+
T Consensus 5 ~~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~~---~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~----- 72 (336)
T KOG1575|consen 5 EPSTELGMLRRKLGNSGLKVSPLGLGCMGWTT---FG---GQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS----- 72 (336)
T ss_pred cccchhcceeeeccCCCceecceeecceeeec---cc---cC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc-----
Confidence 34556689999999999999999999984332 22 23 57799999999999999999999999999887
Q ss_pred hHHHHHHHHHhccCCCCCceEEEEeccCCCC-----CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHH
Q 018530 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDG 182 (354)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~-----~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~a 182 (354)
|.++|++|++++. +|++|+|+||++... ...+...+...++.||++||+|||||||+||+|+ .+.++++++
T Consensus 73 -E~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~a 149 (336)
T KOG1575|consen 73 -EELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRA 149 (336)
T ss_pred -HHHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHH
Confidence 9999999999875 489999999998643 5567888999999999999999999999999998 789999999
Q ss_pred HHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCc
Q 018530 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIF 262 (354)
Q Consensus 183 L~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 262 (354)
|.+++++||||+||+|++++++|.+++..++ +++.++|++||+++|+.++++++++|++.||++++||||++|+|++
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltg 226 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTG 226 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceecc
Confidence 9999999999999999999999999998864 5699999999999999888889999999999999999999999998
Q ss_pred hhhhhhhhhcccchhhhhhhcccCCCceeeeCCCCH-hHHHHHHHHHHHHHHHhCCCcchhhhccccccc
Q 018530 263 AARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKSP-TTVEQNQGTRRELQQNFHTGRPQLAISPGQCCA 331 (354)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~en~~~~~~la~~~~~s~~qlAlaw~~c~~ 331 (354)
++......+... ....|... ...+.. ++.+..++.+.++++++|+|++|+||+|-.++.
T Consensus 227 k~~~~e~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~ 286 (336)
T KOG1575|consen 227 KYKLGEDSRNGD----KRFQFLGL------SPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNG 286 (336)
T ss_pred Cccccccccccc----cccccccc------ccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 654332111110 11122110 012222 666777788888999999999999999966555
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.8e-55 Score=399.68 Aligned_cols=242 Identities=30% Similarity=0.489 Sum_probs=218.5
Q ss_pred ccceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHH
Q 018530 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (354)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG 114 (354)
.+.+.+|++ |.+||.||||||.+++. +.+.+.+.+|++.|+|+||||..||+ |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 356678887 88899999999998764 33889999999999999999999998 99999
Q ss_pred HHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC---ChHHHHHHHHHHHHcCC
Q 018530 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW---GNEGFIDGLGDAVEQGL 191 (354)
Q Consensus 115 ~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---~~~~~~~aL~~l~~~Gk 191 (354)
+++++.+. +|+++||+||+++ ...+++.+.+++++||++||+||||||++|||.+. ...++|++|++++++||
T Consensus 59 ~aI~~s~v--~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESGV--PREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcCC--CHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 99999554 5999999999986 45688999999999999999999999999999752 25799999999999999
Q ss_pred ccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC-CCchhhhhhhh
Q 018530 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS-PIFAARLKTSC 270 (354)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~~~~~~ 270 (354)
||+||||||+..+|+++++. .++.|.++|++||++.++.+ ++++|+++||.+++||||+.|. +...+.+..++
T Consensus 135 ir~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia 208 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIA 208 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccccccChHHHHHH
Confidence 99999999999999999876 35789999999999999875 9999999999999999999766 88888999999
Q ss_pred hcc-cchhhhhhhcccCCCceeeeCCCCHhHHHHHHHHHH
Q 018530 271 SHW-KVYTTESTNWASRPDLHCRVSKKSPTTVEQNQGTRR 309 (354)
Q Consensus 271 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~en~~~~~ 309 (354)
+++ +.+.|.+++|..+.++.+++++.+++|++||+.+++
T Consensus 209 ~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~ 248 (280)
T COG0656 209 KKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFD 248 (280)
T ss_pred HHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhc
Confidence 999 778889999977777888888888999999999977
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.6e-54 Score=410.49 Aligned_cols=253 Identities=33% Similarity=0.499 Sum_probs=220.8
Q ss_pred cceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 018530 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (354)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~ 115 (354)
|++|+||+||++||+||||||.+|+. +.+.+.+++.++|++|+++||||||||++||.|.+ |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999873 22345567888999999999999999999999987 999999
Q ss_pred HHHhccCCCCCceEEEEeccCCCC--------CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHH
Q 018530 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (354)
Q Consensus 116 al~~~~~~~~R~~v~I~TK~~~~~--------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l 186 (354)
+|++++. |++++|+||++... .+.++++++++++.||+|||||||||||+||||+ ++.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999863 79999999998643 3468999999999999999999999999999998 7789999999999
Q ss_pred HHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhh
Q 018530 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARL 266 (354)
Q Consensus 187 ~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 266 (354)
+++||||+||+||++.+++.++++.+ .+++++|.+||+++++.+. +++++|+++||++++||||++|+|+++...
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998874 4799999999999986654 599999999999999999999999986332
Q ss_pred ----------------------------hhhhhcc-cchhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHH
Q 018530 267 ----------------------------KTSCSHW-KVYTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 267 ----------------------------~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~ 309 (354)
..+++.. ..+.+.++.| +.+|.+.+.+.|.+ .+|+++|+++++
T Consensus 220 ~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~ 293 (316)
T COG0667 220 GPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALD 293 (316)
T ss_pred CcchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhc
Confidence 2233333 3346788999 78888877777777 899999999865
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.1e-51 Score=395.24 Aligned_cols=259 Identities=26% Similarity=0.374 Sum_probs=217.0
Q ss_pred cccceeecCCCCcccCceeecccc-cCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCC--CCCCCCCchH
Q 018530 34 TAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSE 110 (354)
Q Consensus 34 ~~m~~r~lg~tg~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~--g~~~~~~~sE 110 (354)
..|+||+||+||++||+||||||+ +|.. .+.+++.++|++|++.||||||||+.||+ |.+ |
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E 74 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------E 74 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------H
Confidence 359999999999999999999996 3321 23467899999999999999999999995 766 9
Q ss_pred HHHHHHHHhccCCCCCceEEEEeccCCC--C----CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHH
Q 018530 111 TLLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (354)
Q Consensus 111 ~~lG~al~~~~~~~~R~~v~I~TK~~~~--~----~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL 183 (354)
+.||++|++.... +|+++||+||++.. + ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|
T Consensus 75 ~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al 153 (346)
T PRK09912 75 ENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASAL 153 (346)
T ss_pred HHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHH
Confidence 9999999874211 38999999998631 1 2357999999999999999999999999999986 5678999999
Q ss_pred HHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCch
Q 018530 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFA 263 (354)
Q Consensus 184 ~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 263 (354)
++|+++||||+||||||++++++++.+.+...++++.++|++||++++..+..+++++|+++||++++|+||++|+|+++
T Consensus 154 ~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~ 233 (346)
T PRK09912 154 AHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGK 233 (346)
T ss_pred HHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCC
Confidence 99999999999999999999999888877666678899999999999876544699999999999999999999999864
Q ss_pred h----------------------------------hhhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHH
Q 018530 264 A----------------------------------RLKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQG 306 (354)
Q Consensus 264 ~----------------------------------~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~ 306 (354)
. .+..++.+++. +.+.+++| +.+|.+.+++++++ ++|+++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~ 313 (346)
T PRK09912 234 YLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQ 313 (346)
T ss_pred CCCCCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHh
Confidence 2 11123334433 45677999 67888888777777 899999999
Q ss_pred HHH
Q 018530 307 TRR 309 (354)
Q Consensus 307 ~~~ 309 (354)
+++
T Consensus 314 a~~ 316 (346)
T PRK09912 314 ALN 316 (346)
T ss_pred hhc
Confidence 873
No 5
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.4e-52 Score=384.66 Aligned_cols=290 Identities=20% Similarity=0.315 Sum_probs=238.0
Q ss_pred cceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 018530 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (354)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~ 115 (354)
|.||++++||.++|.+|||||++... |. ...|++.+.++|++|++.||||||||..|..|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 88999999999999999999998654 32 3457789999999999999999999999987776 999999
Q ss_pred HHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CC---hHHHHHHHHHHHHcC
Q 018530 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WG---NEGFIDGLGDAVEQG 190 (354)
Q Consensus 116 al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~---~~~~~~aL~~l~~~G 190 (354)
+|++.. |++|+++||+..++ ..+++.+++-++++|++||+||+|+|+||..+. +. ..+.++.+++++++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999985 99999999997542 468899999999999999999999999999865 11 234799999999999
Q ss_pred CccEEeccCCCH-HHHHHHHHHHHhcCCCeeeeccccCcccCCcch-hhHHHHHHHcCcEEEEcccCCCCCCCch--hhh
Q 018530 191 LVKAVGVSNYSE-KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQDSPIFA--ARL 266 (354)
Q Consensus 191 kir~iGvSn~~~-~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~--~~~ 266 (354)
|||++|+|.|+. +.+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|+.. .++
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~ 218 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKL 218 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHH
Confidence 999999999964 666676654 5799999999999876542 1489999999999999999999988873 345
Q ss_pred hhhhhccc---chhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHHHHHH-----------H-hCCCcchhhhccccc
Q 018530 267 KTSCSHWK---VYTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRRELQQ-----------N-FHTGRPQLAISPGQC 329 (354)
Q Consensus 267 ~~~~~~~~---~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~~la~-----------~-~~~s~~qlAlaw~~c 329 (354)
..++.++. .+..-+++| +++|.|+++++|++ ++|++||+++++++.. + .+.-...+... |
T Consensus 219 ~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~---C 295 (391)
T COG1453 219 EELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVP---C 295 (391)
T ss_pred HHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCC---C
Confidence 56666664 234466899 89999999999999 8999999999887652 0 00111111222 5
Q ss_pred ccCCCCccCCCCccccccccc
Q 018530 330 CANPRSQKCRTGCRIRGCIGM 350 (354)
Q Consensus 330 ~~~~~~~~c~~gi~i~~~~~~ 350 (354)
.+|.-|+|||+||+||.|||+
T Consensus 296 t~C~yC~PCP~gInIP~~f~l 316 (391)
T COG1453 296 TGCRYCLPCPSGINIPEIFRL 316 (391)
T ss_pred ccccccCcCCCCCChHHHHHH
Confidence 555559999999999999986
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5e-51 Score=388.40 Aligned_cols=255 Identities=23% Similarity=0.324 Sum_probs=212.6
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 018530 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (354)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al 117 (354)
||+||+||++||+||||||.+.+. ..+.+++.++|++|++.||||||||++||.|.+ |+.||++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 588999999999999999974221 135578999999999999999999999998877 99999999
Q ss_pred HhccCCCCCceEEEEeccCCC-----CCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcCC
Q 018530 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (354)
Q Consensus 118 ~~~~~~~~R~~v~I~TK~~~~-----~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~Gk 191 (354)
++.+. +|+++||+||++.. ..+.+++.+++++++||+|||+||||+|++|||++ .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86532 38999999998531 12467999999999999999999999999999987 567899999999999999
Q ss_pred ccEEeccCCCHHHHHHHHHHHHhcC-CCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh------
Q 018530 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA------ 264 (354)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~-~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~------ 264 (354)
||+||||||++++++++...+...+ ++|+++|++||+++++..+.+++++|+++||++++|+||++|+|+++.
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~ 223 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPP 223 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCC
Confidence 9999999999999988876655555 478999999999998754446999999999999999999999987532
Q ss_pred -----------------------------hhhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHH
Q 018530 265 -----------------------------RLKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 265 -----------------------------~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~ 309 (354)
.+..++++++. +.+.+++| +++|++.+++++++ ++|+++|+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~ 300 (317)
T TIGR01293 224 YSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQ 300 (317)
T ss_pred cccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhh
Confidence 12223444433 45677999 77888876666666 999999999876
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.2e-50 Score=388.35 Aligned_cols=260 Identities=22% Similarity=0.317 Sum_probs=213.1
Q ss_pred cceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCC-CCCCchHHHHH
Q 018530 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLG 114 (354)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~-~~~~~sE~~lG 114 (354)
|+||+||+||++||+||||||.||.. .+.+++.++|+.|++.||||||||+.||.+.. ++.+.||..||
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG 70 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIG 70 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHH
Confidence 78999999999999999999998753 24578999999999999999999999984100 01112499999
Q ss_pred HHHHhccCCCCCceEEEEeccCCCC----------CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-----------
Q 018530 115 RFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----------- 173 (354)
Q Consensus 115 ~al~~~~~~~~R~~v~I~TK~~~~~----------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~----------- 173 (354)
++|+..+ +|++++|+||++... ...+++.+++++++||+|||+||||||++|||+.
T Consensus 71 ~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~ 147 (346)
T PRK10625 71 NWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYS 147 (346)
T ss_pred HHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccc
Confidence 9998653 389999999985311 1367999999999999999999999999999864
Q ss_pred -------CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCC-CeeeeccccCcccCCcchhhHHHHHHHc
Q 018530 174 -------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDEL 245 (354)
Q Consensus 174 -------~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~-~~~~~Q~~~n~~~~~~~~~~l~~~~~~~ 245 (354)
.+.+++|++|++|+++||||+||||||+.++++++...+...++ .+.++|++||++++..+. +++++|+++
T Consensus 148 ~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll~~~~~~ 226 (346)
T PRK10625 148 WTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLAEVSQYE 226 (346)
T ss_pred cccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHHHHHHHc
Confidence 24679999999999999999999999999999988776655554 488999999999987543 699999999
Q ss_pred CcEEEEcccCCCCCCCchh------------------------------hhhhhhhcccc-hhhhhhhc-ccCCCceeee
Q 018530 246 GITLIAYCPIAQDSPIFAA------------------------------RLKTSCSHWKV-YTTESTNW-ASRPDLHCRV 293 (354)
Q Consensus 246 gi~v~a~spl~~G~L~~~~------------------------------~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~ 293 (354)
||++++|+||++|+|+++. .+..++.+++. ..+.+++| +++|.+.+++
T Consensus 227 gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I 306 (346)
T PRK10625 227 GVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTL 306 (346)
T ss_pred CCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEE
Confidence 9999999999999987531 12235555544 45678999 7788887766
Q ss_pred CCCC-HhHHHHHHHHHH
Q 018530 294 SKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 294 ~~~~-~~~~~en~~~~~ 309 (354)
++++ ++|+++|+++++
T Consensus 307 ~G~~~~~~l~en~~a~~ 323 (346)
T PRK10625 307 LGATTMEQLKTNIESLH 323 (346)
T ss_pred eCCCCHHHHHHHHhhcc
Confidence 6666 899999999754
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.4e-50 Score=382.24 Aligned_cols=256 Identities=23% Similarity=0.304 Sum_probs=212.8
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 018530 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (354)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al 117 (354)
||+||+||++||.||||||+||+. |+ ..+.+++.++|++|++.||||||||+.||+|.+ |..+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG-----PVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC-----CCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999998863 33 345688999999999999999999999999887 99999999
Q ss_pred HhccCCCCCceEEEEeccCCCC--CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC----CChHHHHHHHHHHHHcCC
Q 018530 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (354)
Q Consensus 118 ~~~~~~~~R~~v~I~TK~~~~~--~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~----~~~~~~~~aL~~l~~~Gk 191 (354)
++.+. +|+++||+||++... .+.+++.+++++++||++||+||||+|++|||+. ...+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 98643 389999999998532 3578999999999999999999999999999964 235689999999999999
Q ss_pred ccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh-------
Q 018530 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA------- 264 (354)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~------- 264 (354)
||+||||||++++++.+.+......+.+..+|+.||+.++..+ +++++|+++||++++|+||++|+|+++.
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~ 223 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPA 223 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCCC
Confidence 9999999999999888776433222345567899998876433 6999999999999999999999998641
Q ss_pred ---------hhhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHHH
Q 018530 265 ---------RLKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRRE 310 (354)
Q Consensus 265 ---------~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~~ 310 (354)
.++.++++++. +.+.+++| +++|.+.+++++++ ++|+++|+++++.
T Consensus 224 ~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~ 281 (314)
T PLN02587 224 PPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATE 281 (314)
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhh
Confidence 12234555544 45688999 77888888777777 8999999999774
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-50 Score=371.32 Aligned_cols=240 Identities=25% Similarity=0.400 Sum_probs=214.9
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 018530 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (354)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al 117 (354)
+.+|.+ |.+||.||||||.. ++.++.+.++.|++.|+||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 678876 99999999999972 2378899999999999999999999999 99999999
Q ss_pred HhccCCC--CCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----------------ChHH
Q 018530 118 KERKQRD--PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (354)
Q Consensus 118 ~~~~~~~--~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----------------~~~~ 178 (354)
++.-.+. +|+++||+||+|. ....++.++.++++||++||+||||||++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 9764322 7999999999976 34789999999999999999999999999998542 2568
Q ss_pred HHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 179 ~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
+|++|++++++|++|+||||||+..+|+++++.+ .++|.++|+++||+.++.+ ++++|+++||.|.|||||+++
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998876 4789999999999988764 999999999999999999976
Q ss_pred CC----Cchhhhhhhhhcc-cchhhhhhhcccCCCceeeeCCCCHhHHHHHHHHHH
Q 018530 259 SP----IFAARLKTSCSHW-KVYTTESTNWASRPDLHCRVSKKSPTTVEQNQGTRR 309 (354)
Q Consensus 259 ~L----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~en~~~~~ 309 (354)
.- ..++.+..+++++ +.++|.+++|..+.++.+++.++++++++||+++++
T Consensus 214 ~~~~~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 214 GRGSDLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFD 269 (300)
T ss_pred CCccccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhcc
Confidence 54 6778889999999 456778899999999999999999999999999866
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=5.4e-48 Score=361.88 Aligned_cols=249 Identities=37% Similarity=0.586 Sum_probs=215.8
Q ss_pred eeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHH
Q 018530 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (354)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al 117 (354)
+|+||+||++||+||||||.++.. | .+.+++.+++++|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 588999999999999999988753 1 35588999999999999999999999999887 99999999
Q ss_pred HhccCCCCCceEEEEeccCCCC---CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-C-hHHHHHHHHHHHHcCCc
Q 018530 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 118 ~~~~~~~~R~~v~I~TK~~~~~---~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~-~~~~~~aL~~l~~~Gki 192 (354)
+..+ +|+++||+||++... .+.+++.+++++++||++||+||||+|++|+|+.. . ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 389999999998643 23689999999999999999999999999999873 3 78999999999999999
Q ss_pred cEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhh-------
Q 018530 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAAR------- 265 (354)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~------- 265 (354)
|+||||||+++.++++.+.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.++....
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~ 218 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE 218 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh
Confidence 99999999999999887664 35899999999999998764 59999999999999999999999876432
Q ss_pred ------hhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHH
Q 018530 266 ------LKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTR 308 (354)
Q Consensus 266 ------~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~ 308 (354)
+...+...+. ..+.+++| +++|.+.+++.+++ ++|+++|++++
T Consensus 219 ~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~ 270 (285)
T cd06660 219 GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAAL 270 (285)
T ss_pred hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhc
Confidence 2244555544 45678999 78888888888777 89999999886
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.4e-47 Score=353.63 Aligned_cols=231 Identities=24% Similarity=0.378 Sum_probs=197.7
Q ss_pred cccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 018530 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (354)
Q Consensus 46 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (354)
++||.||||||+++. +++.+++++|++.||||||||+.||+ |+.+|++|++.+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999998643 57899999999999999999999996 9999999987543 3
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC---CChHHHHHHHHHHHHcCCccEEeccCCCH
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~---~~~~~~~~aL~~l~~~Gkir~iGvSn~~~ 202 (354)
|+++||+||++. ...+++.+++++++||+|||+||||+|++|||++ .+.+++|++|++++++||||+||||||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 3478999999999999999999999999999975 35688999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccc-hhhhh
Q 018530 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKV-YTTES 280 (354)
Q Consensus 203 ~~l~~~~~~~~~~~~-~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~-~~~~~ 280 (354)
++++++.+.. +. +++++|++||++++.. +++++|+++||+|++|+||++|.+...+.+..++++++. +.+.+
T Consensus 134 ~~l~~~~~~~---~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~~~~~s~aqva 207 (267)
T PRK11172 134 ALMKQAIAAV---GAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAAKHNATPAQVI 207 (267)
T ss_pred HHHHHHHHhc---CCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHHHhCCCHHHHH
Confidence 9999887642 23 6899999999998752 599999999999999999999988777778888887755 45577
Q ss_pred hhcccCCCceeeeCCCCHhHHHHHHHHHH
Q 018530 281 TNWASRPDLHCRVSKKSPTTVEQNQGTRR 309 (354)
Q Consensus 281 ~~~~~~~~v~~~~~~~~~~~~~en~~~~~ 309 (354)
++|..+.++.+++...+++|+++|+++++
T Consensus 208 l~w~l~~~~~~i~g~~~~~~l~~n~~~~~ 236 (267)
T PRK11172 208 LAWAMQLGYSVIPSSTKRENLASNLLAQD 236 (267)
T ss_pred HHHHHhCCCEeecCCCCHHHHHHHHhhcC
Confidence 99944445655555555999999998854
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.6e-47 Score=356.24 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=202.9
Q ss_pred eecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHH
Q 018530 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (354)
Q Consensus 39 r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~ 118 (354)
.+|+ |++||+||||||++|+.+.|+. ..+++++.++|+.|++.||||||||+.||+|.+ |+.+|++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 4555 8999999999999987534542 235678999999999999999999999999876 999999996
Q ss_pred hccCCCCCceEEEEeccCCC-------CCCCCHHHHHHHHHHHHHhhCCCccceEEEccCC------CCChHHHHHHHHH
Q 018530 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLGD 185 (354)
Q Consensus 119 ~~~~~~~R~~v~I~TK~~~~-------~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~------~~~~~~~~~aL~~ 185 (354)
.. |+++||+||++.. +...+++.+++++++||+|||+||||+|++|+++ ..+.+++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 42 7999999998641 2356799999999999999999999999988742 2346789999999
Q ss_pred HHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhh
Q 018530 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAAR 265 (354)
Q Consensus 186 l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 265 (354)
|+++||||+||||||++++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++.......
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~~~~~~~ 225 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFTPLQSST 225 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCChhhhHH
Confidence 99999999999999999999988765 368999999999997643 59999999999999999998654333456
Q ss_pred hhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHH
Q 018530 266 LKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~ 309 (354)
+..++.+++. ..+.+++| ++++...+++++++ ++|+++|+++++
T Consensus 226 l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~ 272 (290)
T PRK10376 226 LSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAE 272 (290)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhcc
Confidence 7777877765 45677999 55654445555555 999999998864
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.4e-46 Score=351.70 Aligned_cols=243 Identities=17% Similarity=0.203 Sum_probs=198.3
Q ss_pred CcccCceeecccccCCC-CCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCC
Q 018530 45 DLKVTKLGVGAWSWGDT-SYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR 123 (354)
Q Consensus 45 g~~vs~lglG~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~ 123 (354)
+++||+||||||+||.. ++|+ ..+...+.+++.++|+.|++.||||||||+.||. ||+.+|++|+..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~-~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~--- 69 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSS-APRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRP--- 69 (292)
T ss_pred CCcceeeeeeeeccCCCccccc-CCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccC---
Confidence 68999999999999863 1111 1123467799999999999999999999999974 599999999742
Q ss_pred CCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CCh-HHHHHHHHHHHHcCCccEEeccCC
Q 018530 124 DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNY 200 (354)
Q Consensus 124 ~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~-~~~~~aL~~l~~~Gkir~iGvSn~ 200 (354)
.|++++|+||.. +.+++.+++++++||+|||+||||+|++|+|++ .+. +++|++|++|+++||||+||||||
T Consensus 70 -~~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 144 (292)
T PRK14863 70 -VPFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAH 144 (292)
T ss_pred -CceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeecc
Confidence 146799999862 457899999999999999999999999999976 223 578999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhh---------------
Q 018530 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAAR--------------- 265 (354)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~--------------- 265 (354)
+++++.++... .+|+++|++||+++++.+..+++++|+++||++++|+||++|+|+....
T Consensus 145 ~~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~ 219 (292)
T PRK14863 145 ASDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSR 219 (292)
T ss_pred CHHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHH
Confidence 99888776432 5899999999999987643369999999999999999999999875321
Q ss_pred hhhhhhccc-chhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHH
Q 018530 266 LKTSCSHWK-VYTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 266 ~~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~ 309 (354)
+...++..+ .+.+.+++| +++|.+.+++.|++ ++|+++|+++++
T Consensus 220 ~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~ 266 (292)
T PRK14863 220 VRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAAS 266 (292)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHh
Confidence 111222233 345678999 77899988777777 899999999877
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=330.74 Aligned_cols=247 Identities=19% Similarity=0.351 Sum_probs=217.4
Q ss_pred cceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHH
Q 018530 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (354)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~ 115 (354)
|++.+|++.|+++|+|.+|+|++.. |+ ++.++....|+.+++.|||+||-|+.||++.+ |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7889999889999999999999876 44 34478899999999999999999999999998 999999
Q ss_pred HHHhccCCCCCceEEEEeccCC----------CCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHH
Q 018530 116 FIKERKQRDPEVEVTVATKFAA----------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (354)
Q Consensus 116 al~~~~~~~~R~~v~I~TK~~~----------~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~ 184 (354)
+|+-.+.- |+++.|.||+|. ..++.+.++|.+++|+||++|+|||||++++|+||+ .+.+++-+|+.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99887753 899999999986 146789999999999999999999999999999999 78999999999
Q ss_pred HHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh
Q 018530 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA 264 (354)
Q Consensus 185 ~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 264 (354)
.|.+.||||++|||||+|.+++-+..... .++.+||+++|+++.....++.+++|+.+.|..++||||++|.++..
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g- 219 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG- 219 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC-
Confidence 99999999999999999999998877643 35899999999999988888899999999999999999999976531
Q ss_pred hhhhhhhcccchhhhhhhcccCCCceeeeCCCCHhHHHHHHHHHHHHHHHhC-CCcchhhhcccccccCCCCcc
Q 018530 265 RLKTSCSHWKVYTTESTNWASRPDLHCRVSKKSPTTVEQNQGTRRELQQNFH-TGRPQLAISPGQCCANPRSQK 337 (354)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~en~~~~~~la~~~~-~s~~qlAlaw~~c~~~~~~~~ 337 (354)
.+.+++--++++.+++++| .|.++||+||-+ +.|..-+|
T Consensus 220 ---------------------------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWll-R~Pa~~~P 259 (298)
T COG4989 220 ---------------------------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLL-RHPAKPQP 259 (298)
T ss_pred ---------------------------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHH-hCcCcccc
Confidence 2345566678999999999 799999999954 44333333
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.2e-44 Score=337.84 Aligned_cols=237 Identities=22% Similarity=0.328 Sum_probs=198.7
Q ss_pred ceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHH
Q 018530 37 DKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF 116 (354)
Q Consensus 37 ~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~a 116 (354)
++.+| ++|+.||+||||||+++ .+++.++|++|++.||||||||+.||+ |+.+|++
T Consensus 5 ~~~~l-~~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~a 60 (275)
T PRK11565 5 TVIKL-QDGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKA 60 (275)
T ss_pred ceEEc-CCCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHH
Confidence 34567 45999999999999753 267899999999999999999999986 9999999
Q ss_pred HHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC--ChHHHHHHHHHHHHcCCccE
Q 018530 117 IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKA 194 (354)
Q Consensus 117 l~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~--~~~~~~~aL~~l~~~Gkir~ 194 (354)
|+..+. +|++++|+||++ ..+++.+++++++||++||+||||+|++|||++. ...++|++|++|+++||||+
T Consensus 61 l~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~ 134 (275)
T PRK11565 61 LKEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKS 134 (275)
T ss_pred HHHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeE
Confidence 997543 389999999985 3467899999999999999999999999999762 36799999999999999999
Q ss_pred EeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC--CCchhhhhhhhhc
Q 018530 195 VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS--PIFAARLKTSCSH 272 (354)
Q Consensus 195 iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~--L~~~~~~~~~~~~ 272 (354)
||||||++++++++... .+++|.++|++||++.+.. +++++|+++||.+++|+||++|. +.....+..++++
T Consensus 135 iGvSn~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~ 208 (275)
T PRK11565 135 IGVCNFQIHHLQRLIDE---TGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADK 208 (275)
T ss_pred EeeccCCHHHHHHHHHh---CCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHH
Confidence 99999999999988643 3467899999999998753 59999999999999999998763 3344567788877
Q ss_pred ccc-hhhhhhhcccCCCceeeeCCCCHhHHHHHHHHHH
Q 018530 273 WKV-YTTESTNWASRPDLHCRVSKKSPTTVEQNQGTRR 309 (354)
Q Consensus 273 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~en~~~~~ 309 (354)
++. ..+.+++|..+.++.+++...+++|+++|+++++
T Consensus 209 ~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~ 246 (275)
T PRK11565 209 YGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFD 246 (275)
T ss_pred hCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccC
Confidence 755 5567799954445555555555999999998855
No 16
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=5.7e-45 Score=341.07 Aligned_cols=238 Identities=32% Similarity=0.521 Sum_probs=194.9
Q ss_pred ceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceE
Q 018530 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (354)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v 129 (354)
+||||||.++.. ..+.+++.++|+.|++.|||+||||+.||+|.+ |+.+|++|++.+. +|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~~--~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSRV--PRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTSS--TGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------ccccccccccccc--ccccc
Confidence 589999998752 357799999999999999999999999988876 9999999999333 49999
Q ss_pred EEEeccC---CCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CC-hHHHHHHHHHHHHcCCccEEeccCCCHHH
Q 018530 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (354)
Q Consensus 130 ~I~TK~~---~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~-~~~~~~aL~~l~~~Gkir~iGvSn~~~~~ 204 (354)
+|+||+. ......+++.+++++++||++||+||||+|++|+|+. .. ..++|++|++|+++|+||+||||||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1235689999999999999999999999999999987 55 79999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh--------------------
Q 018530 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA-------------------- 264 (354)
Q Consensus 205 l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~-------------------- 264 (354)
++.+ .....++|+++|++||++++.... +++++|+++||++++|+||++|.|++..
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELAD 219 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHH
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccccchhhhhhh
Confidence 9988 223346899999999999554443 6999999999999999999999987432
Q ss_pred hhhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHH
Q 018530 265 RLKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTR 308 (354)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~ 308 (354)
.+..++.+++. ..+.+++| +++|.+.+++.+++ ++|+++|++++
T Consensus 220 ~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~ 266 (283)
T PF00248_consen 220 ALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAAL 266 (283)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGS
T ss_pred hhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHh
Confidence 24445555544 45578999 77888888888777 89999999886
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=9.9e-41 Score=296.07 Aligned_cols=269 Identities=20% Similarity=0.237 Sum_probs=223.4
Q ss_pred cccccceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHH
Q 018530 32 VKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET 111 (354)
Q Consensus 32 ~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~ 111 (354)
..+.|+||.+|.||++||+||||...++.. +.+.++++....+..|++.|||+|||++.||++++ |.
T Consensus 18 ~vrrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~ 84 (342)
T KOG1576|consen 18 KVRRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EE 84 (342)
T ss_pred HHHHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HH
Confidence 346899999999999999999999999876 44567788888888899999999999999999988 99
Q ss_pred HHHHHHHhccCCCCCceEEEEeccCCCC------CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----ChHHHH
Q 018530 112 LLGRFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFI 180 (354)
Q Consensus 112 ~lG~al~~~~~~~~R~~v~I~TK~~~~~------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----~~~~~~ 180 (354)
.+|.++++.| |+.++|+||++... ++++.+.+++++++||+||++||||++++|..+.. ...|++
T Consensus 85 ~lg~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etl 160 (342)
T KOG1576|consen 85 GLGLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETL 160 (342)
T ss_pred HHHHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHH
Confidence 9999999985 99999999999732 57899999999999999999999999999997763 267899
Q ss_pred HHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeec--cccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 181 ~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q--~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
.+|++++++||||+|||+.++.+.+..+++.. .-..+++- ..|++.+..-. ..+++.+++|++|+.-++++.|
T Consensus 161 p~Le~lk~~Gk~RfiGitgypldvl~~~ae~~---~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~Asalsmg 235 (342)
T KOG1576|consen 161 PALEELKQEGKIRFIGITGYPLDVLTECAERG---KGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMG 235 (342)
T ss_pred HHHHHHHhcCceeEeeecccchHHHHHHHhcC---CCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHH
Confidence 99999999999999999999999998886542 11355555 56666555433 4778889999999999999999
Q ss_pred CCCchhhhhhhhhcccchhhhhhhcccCCCceeeeCCCCHhHHHHHHHHHHHHHHHhCCCcchhhhcccccccCCCCccC
Q 018530 259 SPIFAARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKSPTTVEQNQGTRRELQQNFHTGRPQLAISPGQCCANPRSQKC 338 (354)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~en~~~~~~la~~~~~s~~qlAlaw~~c~~~~~~~~c 338 (354)
+|+......+ ||. .+++++.-+...+..++.++..+.||+.+ ..+.+...+|
T Consensus 236 LLt~~gp~~w-----------------HPa---------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Y--am~~~~~~~~ 287 (342)
T KOG1576|consen 236 LLTNQGPPPW-----------------HPA---------SDELKEAAKAAAEYCQSRNVELGKLAMYY--AMSLPGVSTV 287 (342)
T ss_pred HhhcCCCCCC-----------------CCC---------CHHHHHHHHHHHHHHHHcCccHHHHHHHH--HHccCCcceE
Confidence 9987543332 332 36678888888889999999999999995 4455666788
Q ss_pred CCCccccccccc
Q 018530 339 RTGCRIRGCIGM 350 (354)
Q Consensus 339 ~~gi~i~~~~~~ 350 (354)
-+|++=.+.+|.
T Consensus 288 lvGm~s~~~l~~ 299 (342)
T KOG1576|consen 288 LVGMSSRQLLRI 299 (342)
T ss_pred EecCchHHHHHH
Confidence 899887776653
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.03 E-value=1.2e-05 Score=71.67 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcc
Q 018530 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 176 ~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~s 253 (354)
..++|+.|++++.+|+|..||||.|+..+|+++++.+ .+.|.++|++..-...-+. +|.++|..++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~sa---qVvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSA---QVVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhh---ccccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 4579999999999999999999999999999999886 4789999999988777665 59999999999998765
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=88.61 E-value=8.3 Score=37.51 Aligned_cols=144 Identities=19% Similarity=0.180 Sum_probs=90.7
Q ss_pred CceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCC---CCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 018530 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (354)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (354)
..+|-=|..+-. |+.-.....+.++..++++..-+.- +-.+|..+.-+.- ...+.+.+. .
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~------~ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVG------N 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhC------C
Confidence 445666665543 2221112234455566776666554 4567765533321 233333332 1
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHH
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l 205 (354)
+.-++|.+|.-..+.....+.+.+.++.-.+.+|....|++++........+++++.+.+..+.+.+-.+|.+|.....|
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 46788999986533233455666666766777787666888887766677888999998888788899999999998777
Q ss_pred HHHH
Q 018530 206 RNAY 209 (354)
Q Consensus 206 ~~~~ 209 (354)
-..+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 6554
No 20
>PRK08392 hypothetical protein; Provisional
Probab=86.35 E-value=24 Score=31.47 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHH---hccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~---~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
...+.++.|.+.|++.|=.+++.-... ...+-..++ +...+ .+-+|++..-++.. ++. ....+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~-------~~~~~~y~~~i~~l~~~-~~i~il~GiE~~~~-----~~~-~~~~~ 80 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFT-------PSKFNAYINEIRQWGEE-SEIVVLAGIEANIT-----PNG-VDITD 80 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccc-------hhhHHHHHHHHHHHhhc-cCceEEEeEEeeec-----CCc-chhHH
Confidence 356789999999999987776652210 111222222 22211 01233333333211 111 12333
Q ss_pred HHHHhhCCCccceEEEc-cCCCCChHHHHHHHHHHHHcCCccEEeccC--------CCHHHHHHHHHHHHhcCCCeeeec
Q 018530 153 DSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH-~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn--------~~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
..+++ .||+ +.-+| +++....+...+.+.++.+.+.+.-+|=-. ...+.++++++.+...|..+.+|-
T Consensus 81 ~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 81 DFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC
Confidence 34443 4665 66678 443333467788888888999876665311 113566777777877777777764
Q ss_pred cccCcccCCcchhhHHHHHHHcCcEEE
Q 018530 224 VNYSLIYRKPEENGVKAACDELGITLI 250 (354)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~v~ 250 (354)
. +. . +.. .+++.|++.|+.++
T Consensus 158 ~-~~--~--p~~-~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 R-YR--V--PDL-EFIRECIKRGIKLT 178 (215)
T ss_pred C-CC--C--CCH-HHHHHHHHcCCEEE
Confidence 2 21 1 222 48999999997654
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.90 E-value=19 Score=33.98 Aligned_cols=157 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
+.++..+.++.+++.|++.|+.-- |.... ...+.+ +++++.- - ++-|.-+.. ..++.+.. ..+-
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~----g-~~~l~vD~n---~~~~~~~A-~~~~ 197 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA----P-DARLRVDAN---QGWTPEEA-VELL 197 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC----C-CCeEEEeCC---CCcCHHHH-HHHH
Confidence 346667788888999999999742 32110 012223 2333321 1 455666663 23555443 2333
Q ss_pred HHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccC
Q 018530 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~ 231 (354)
+.|+.+++++ +-.|-+ .+-++.+.+|++.-.|. +.|=+-++...+.++++. --.+++|+.....-.
T Consensus 198 ~~l~~~~l~~-----iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GG 264 (316)
T cd03319 198 RELAELGVEL-----IEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGG 264 (316)
T ss_pred HHHHhcCCCE-----EECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCC
Confidence 4555555444 333322 13467788888887775 445566788888877653 246778877655321
Q ss_pred CcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 232 KPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
-.....+..+|+++|+.++..+-+.++
T Consensus 265 i~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 265 LTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 111225889999999999987555443
No 22
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.78 E-value=5.5 Score=39.05 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 018530 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL 155 (354)
....++++|++.|++++||+.+.-. +..+.+..+ +..+.+..-+|..| ..+--.+...+++--
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~~ 142 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFDP-GITNVLAAYAAKELF 142 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcCc-chHHHHHHHHHHHhh
Confidence 3457899999999999999976544 333333333 34567777776432 222222333333322
Q ss_pred HhhCCCccceEEEccCCC
Q 018530 156 FRLGLSSVELYQLHWAGI 173 (354)
Q Consensus 156 ~rLg~dyiDl~~lH~p~~ 173 (354)
+ .+++||+|..+-|++
T Consensus 143 ~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 143 D--EIESIDIYVGGLGEH 158 (389)
T ss_pred c--cccEEEEEEecCCCC
Confidence 2 589999999998775
No 23
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=84.51 E-value=32 Score=31.59 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~ 153 (354)
.++..+.++.+.+.|++.|-.=- |.... .-.+.+ +++++.- .+++.|.-... ..++.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~~~~----~d~~~v-~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GRDPA----RDVAVV-AALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CCCHH----HHHHHH-HHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 35566777888899999887532 21100 001222 3344332 13455554442 235555444433 3
Q ss_pred HHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCC
Q 018530 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (354)
Q Consensus 154 SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~ 232 (354)
.|+.++ +.++..|-+. +-++.+.++++.-.+. +.|=+-+++..+.++++. -..+++|+..+..-.=
T Consensus 151 ~l~~~~-----i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDLG-----LDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhcC-----CCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 444444 4444555331 2357777788776654 455566788888777653 2477888876654321
Q ss_pred cchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 233 PEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
.+...+...|+++|+.++..+.+.+++
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchHH
Confidence 122258899999999999876655443
No 24
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=83.86 E-value=18 Score=35.45 Aligned_cols=198 Identities=13% Similarity=0.144 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHH-HHhccCCC---CCceEEEEeccCCCCCCCCHHHHH
Q 018530 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRF-IKERKQRD---PEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~a-l~~~~~~~---~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
.+.-.+-++.|++.|-. ..|-+. .|+ -..+-+. |+..+... |=-+.++-.. ....+.+.+.+.
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-Ggd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~--~~~~~mt~d~~~ 143 (423)
T TIGR00190 76 IEEEVEKALIAIKYGADTVMDLST-GGD---------LDEIRKAILDAVPVPVGTVPIYQAAEKVH--GAVEDMDEDDMF 143 (423)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCC---------HHHHHHHHHHcCCCCccCccHHHHHHHhc--CChhhCCHHHHH
Confidence 34445568999999976 556543 344 3333333 33333211 0001111000 012457889999
Q ss_pred HHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCc
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~ 228 (354)
+.+++..+ |-||.+-+|.- -..+.++.++++| |..|+-+-.-..+......- -.=||
T Consensus 144 ~~ie~qa~----dGVDfmTiH~G------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~-----------~~ENP 200 (423)
T TIGR00190 144 RAIEKQAK----DGVDFMTIHAG------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLHH-----------HKENP 200 (423)
T ss_pred HHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHHc-----------CCcCc
Confidence 99998887 56899999964 3678899999999 45777777666665554321 12255
Q ss_pred ccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh---hhhhhhhcccchhhhhhhcccCCCceeeeCCCC--H-hHHH
Q 018530 229 IYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA---RLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--P-TTVE 302 (354)
Q Consensus 229 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~ 302 (354)
++...+ ++++.|+++++.+-----|--|-+.... ++.++. . ...+.+-+...+|-+.+-|.- | .+++
T Consensus 201 lye~fD--~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~----~-lgeL~~rA~e~gVQvMVEGPGHvPl~~I~ 273 (423)
T TIGR00190 201 LYKNFD--YILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELI----T-LGELVERAREADVQCMVEGPGHVPLDQIE 273 (423)
T ss_pred hHHHHH--HHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH----H-HHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 555443 5999999999998533333333333211 111100 0 001112233467777777765 3 8899
Q ss_pred HHHHHHHHHHH
Q 018530 303 QNQGTRRELQQ 313 (354)
Q Consensus 303 en~~~~~~la~ 313 (354)
.|+++-.+|..
T Consensus 274 ~nv~lqK~lc~ 284 (423)
T TIGR00190 274 ANVRLQKELCD 284 (423)
T ss_pred HHHHHHHHhhC
Confidence 99988777654
No 25
>PRK08609 hypothetical protein; Provisional
Probab=83.12 E-value=55 Score=33.93 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=85.7
Q ss_pred HHHHHHHHHHCCCCeeecccccCC-----CCCCCCCchHHHHHHHH---HhccCCCCCceEEEEeccCCCCCCCCHHHHH
Q 018530 77 AKAAFDTSLDNGITFFDTAEVYGS-----RASFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDTA~~Yg~-----g~~~~~~~sE~~lG~al---~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
..++++.|.+.|+.+|=.++++.. |.+ ...+-..+ +......+.=+|++..-+.. .++...
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~------~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i-----~~~g~~ 419 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLT------EERLLEQAEEIKALNEKYPEIDILSGIEMDI-----LPDGSL 419 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCC------HHHHHHHHHHHHHHHHhcCCCeEEEEEEEee-----cCCcch
Confidence 445899999999999988888622 222 33333332 22221111113444433332 111112
Q ss_pred HHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccC------C--CHHHHHHHHHHHHhcCCCee
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn------~--~~~~l~~~~~~~~~~~~~~~ 220 (354)
.-.+..|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++.+.+...|+.+.
T Consensus 420 d~~~~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lE 496 (570)
T PRK08609 420 DYDDEVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALE 496 (570)
T ss_pred hhcHHHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEE
Confidence 222334444 5666 77778764445677888899999888877665332 1 13456666666666665455
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEE
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLI 250 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 250 (354)
+|-..+ ..... ..++..|.+.|+.++
T Consensus 497 INa~~~---r~~~~-~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 497 LNANPN---RLDLS-AEHLKKAQEAGVKLA 522 (570)
T ss_pred EcCCcc---ccCcc-HHHHHHHHHcCCEEE
Confidence 443332 21121 248888888888643
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=82.82 E-value=44 Score=31.73 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=90.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~ 149 (354)
...+.++..++++.+.+.|++.+.-. | |+. .. ..-+-+.++.......-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEP--ll--~~~l~~li~~i~~~~~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEP--LL--RKDLEDIIAALAALPGIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCC--cC--ccCHHHHHHHHHhcCCCceEEEEcCchh---------HHH
Confidence 34667889999999999999877643 3 321 11 1112333333221000246777776521 112
Q ss_pred HHHHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCC----ccEEeccCCCHHHHHHHHHHHHhcC
Q 018530 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gk----ir~iGvSn~~~~~l~~~~~~~~~~~ 216 (354)
. -..|...|++.|- +-+|..++ ...+.++++++.+++.|. |..+.+-..+.+.+.++.+.++..+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 2 2345555655442 33344332 236789999999999985 3345555677788999988887766
Q ss_pred CCeeeeccccCcccCCcc--------hhhHHHHHHHcCcEEEE
Q 018530 217 IPLASNQVNYSLIYRKPE--------ENGVKAACDELGITLIA 251 (354)
Q Consensus 217 ~~~~~~Q~~~n~~~~~~~--------~~~l~~~~~~~gi~v~a 251 (354)
+.+ .-++|.++..... ..++++..+++|+.+..
T Consensus 188 v~v--~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 188 IQL--RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CeE--EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 543 3344444332210 12577888887765443
No 27
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.02 E-value=4 Score=38.78 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=92.5
Q ss_pred ccccccceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHCCCC--eeecccccCCCCCCCCCc
Q 018530 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (354)
Q Consensus 31 ~~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~fDTA~~Yg~g~~~~~~~ 108 (354)
+.+.+|++..++ .|..|-.+|+|. +|.. .++.|-..|.+ .||+++
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~------------ 215 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSS------------ 215 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCc------------
Confidence 566789999998 599999999987 6653 46667777765 666543
Q ss_pred hHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHH
Q 018530 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (354)
Q Consensus 109 sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~ 188 (354)
+---++++.++ .|.||.+.- +++ ..+++..++. .+.|.+--+ .....-..+.-+|.
T Consensus 216 --~kkeea~~~LG-----Ad~fv~~~~-------d~d-~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 216 --KKKEEAIKSLG-----ADVFVDSTE-------DPD-IMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKV 271 (360)
T ss_pred --hhHHHHHHhcC-----cceeEEecC-------CHH-HHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhc
Confidence 12225677777 345555442 233 3333444433 233332222 11234456777899
Q ss_pred cCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEE
Q 018530 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (354)
Q Consensus 189 ~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v 249 (354)
.|++-.+|+-+. +..+.-.- .-+-...+-.|..-...+.++++++|.+++|..
T Consensus 272 ~Gt~V~vg~p~~-~~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEK-PLKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCC-cccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999999999876 22222110 123445556666655556668999999998753
No 28
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=80.48 E-value=22 Score=34.96 Aligned_cols=199 Identities=13% Similarity=0.136 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHH-HHHhccCCC---CCceEEEEe--ccCCCCCCCCHHH
Q 018530 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGR-FIKERKQRD---PEVEVTVAT--KFAALPWRLGRQS 146 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~-al~~~~~~~---~R~~v~I~T--K~~~~~~~~~~~~ 146 (354)
.+.-.+=++.|++.|-. ..|-+. .|+ -..+-+ .|+..+... |=-+.++-. |-+ ...+.+.+.
T Consensus 76 ~~~E~~K~~~A~~~GADtiMDLSt-ggd---------l~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~-~~~~mt~d~ 144 (431)
T PRK13352 76 IEEELEKAKVAVKYGADTIMDLST-GGD---------LDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG-SVVDMTEDD 144 (431)
T ss_pred HHHHHHHHHHHHHcCCCeEeeccC-CCC---------HHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC-ChhhCCHHH
Confidence 34445568999999976 555543 333 333333 333332211 000111101 111 124678899
Q ss_pred HHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 147 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
+.+.+++..+ |-||.+-+|.- -..+.++.++++|+ ..|+-+-.-..+......- ..=
T Consensus 145 ~~~~ie~qa~----~GVDfmTiHcG------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n-----------~~E 201 (431)
T PRK13352 145 LFDVIEKQAK----DGVDFMTIHCG------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN-----------NKE 201 (431)
T ss_pred HHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc-----------CCc
Confidence 9999998887 56899999964 25788899999984 4777777666665554321 122
Q ss_pred CcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh---hhhhhhhcccchhhhhhhcccCCCceeeeCCCC--H-hH
Q 018530 227 SLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA---RLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--P-TT 300 (354)
Q Consensus 227 n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~ 300 (354)
||++...+ ++++.|+++++.+--=--|--|-+.... ++.++. . ...+.+-+...+|-+.+-|.- | .+
T Consensus 202 NPlye~fD--~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~----~-lgeL~~RA~e~gVQvMVEGPGHvPl~~ 274 (431)
T PRK13352 202 NPLYEHFD--YLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELI----T-LGELVKRAREAGVQVMVEGPGHVPLDQ 274 (431)
T ss_pred CchHHHHH--HHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH----H-HHHHHHHHHHcCCeEEEECCCCCCHHH
Confidence 55555444 5999999999998533333333333211 111100 0 001112234567888887765 2 88
Q ss_pred HHHHHHHHHHHHH
Q 018530 301 VEQNQGTRRELQQ 313 (354)
Q Consensus 301 ~~en~~~~~~la~ 313 (354)
++.|+++-.+|..
T Consensus 275 I~~nv~l~K~lc~ 287 (431)
T PRK13352 275 IEANVKLQKRLCH 287 (431)
T ss_pred HHHHHHHHHHhhC
Confidence 9999998777655
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=79.56 E-value=58 Score=31.01 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
..+.++..++++.+.+.|+..|.-. | |+. .. ..-+-+.++.........++.|+|-... +. .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G-GEP--ll--r~dl~~li~~i~~~~~l~~i~itTNG~l---------l~-~ 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G-GEP--LV--RRGCDQLVARLGKLPGLEELSLTTNGSR---------LA-R 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-cCC--Cc--cccHHHHHHHHHhCCCCceEEEEeChhH---------HH-H
Confidence 4677889999999999999877542 3 321 00 1112233322211000125666665421 22 2
Q ss_pred HHHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCC--c--cEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gk--i--r~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
.-+.|+..|+++|-+ -|+..++ ...+.+++.++.+++.|. | ..+.+...+.+.+.++.+.+...++
T Consensus 106 ~~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 106 FAAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 345566677776653 4444432 125789999999999885 2 3444556788899999999888776
Q ss_pred Ceee
Q 018530 218 PLAS 221 (354)
Q Consensus 218 ~~~~ 221 (354)
.+.+
T Consensus 185 ~~~~ 188 (329)
T PRK13361 185 DIAF 188 (329)
T ss_pred eEEE
Confidence 5443
No 30
>PRK07945 hypothetical protein; Provisional
Probab=79.19 E-value=62 Score=31.09 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCC-CCCCCCchHHHHHHHHHh---ccCCCCCc-eEEEEeccCCCCCCCCHHHHHHH
Q 018530 76 AAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin~fDTA~~Yg~g-~~~~~~~sE~~lG~al~~---~~~~~~R~-~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
...+++++|.+.|+..+=.+++.-.- ...+. +...+-+.++. ...+. .+ +|++.--+...+ +.+.+..
T Consensus 112 ~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~--~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 112 PIEEMARTAAALGHEYCALTDHSPRLTVANGL--SAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccCCCCC--CHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 35679999999999988777764221 00000 12223333322 22111 22 222222222111 1222322
Q ss_pred HHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccC------------CCHHHHHHHHHHHHhcCCC
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIP 218 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn------------~~~~~l~~~~~~~~~~~~~ 218 (354)
++.|+. .||+ +.-+|+....+.++..+.|.++.+.+++..+|=-. .....++++.+.+...++.
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~ 260 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA 260 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE
Confidence 333333 5666 67779865445566778888888888887777321 0111235566666666666
Q ss_pred eeeeccccCcccCCcchhhHHHHHHHcCcEE
Q 018530 219 LASNQVNYSLIYRKPEENGVKAACDELGITL 249 (354)
Q Consensus 219 ~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v 249 (354)
+.+|-.... ..+. ..++..|++.|+.+
T Consensus 261 lEINt~~~r---~~P~-~~il~~a~e~G~~v 287 (335)
T PRK07945 261 VEINSRPER---RDPP-TRLLRLALDAGCLF 287 (335)
T ss_pred EEEeCCCCC---CCCh-HHHHHHHHHcCCeE
Confidence 666643322 2222 24888888888875
No 31
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=78.79 E-value=1.4 Score=32.00 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=15.9
Q ss_pred ccccCCCC-ccCCCCcccc
Q 018530 328 QCCANPRS-QKCRTGCRIR 345 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~ 345 (354)
.|..|++| .-||+||+|.
T Consensus 51 ~CVgCgrCv~~CP~~Idir 69 (69)
T PF13746_consen 51 DCVGCGRCVRVCPAGIDIR 69 (69)
T ss_pred cCCCcChHhhhcCCCCCcC
Confidence 59999999 6799999995
No 32
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=77.96 E-value=13 Score=33.97 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCC----------------CCCCCCCchHHHHHHHHHhccCCCCCceEEEEecc
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~----------------g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~ 135 (354)
.+.++..++.+++-+.||.||=|...-.. ++. ..-.+| +.+.+. ...++|+|-.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl----~n~~lL-~~~A~t-----gkPvIlSTG~ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDL----TNLPLL-EYIAKT-----GKPVILSTGM 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGT----T-HHHH-HHHHTT------S-EEEE-TT
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccc----cCHHHH-HHHHHh-----CCcEEEECCC
Confidence 45688899999999999999988653211 000 001122 111122 2457777766
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC---hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHH
Q 018530 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (354)
Q Consensus 136 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~---~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~ 209 (354)
.+.+.|.++++...++-+ -|+.++|.....| .+--+..|..|++.=- --||+|.|+.....-+.
T Consensus 123 ------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~ 189 (241)
T PF03102_consen 123 ------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIA 189 (241)
T ss_dssp --------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHH
T ss_pred ------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHH
Confidence 466777777776644433 5999999876522 2334556666664422 56899999864443333
No 33
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=76.69 E-value=73 Score=30.55 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~ 153 (354)
.++..+.++.+.+.|++.|-.=-..+....+......+.+ +++++.- -.++.|.-... ..++.+...+-++
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~~~~- 210 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIRLAR- 210 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHHHHH-
Confidence 4666777788889999988653211110000000012233 3333321 13556666653 2355554443322
Q ss_pred HHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCC
Q 018530 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (354)
Q Consensus 154 SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~ 232 (354)
.|+.+ ++.++..|-+. +.++.+.++++.-.+. ..|=|.+++..+.++++. -..+++|+...-.---
T Consensus 211 ~l~~~-----~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 211 ALEEY-----DLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred HhCcc-----CCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 23333 45556655432 2467778888876554 445566788888887654 1467888776554211
Q ss_pred cchhhHHHHHHHcCcEEEEcc
Q 018530 233 PEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~s 253 (354)
.....+..+|+++|+.++..+
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccC
Confidence 112258999999999987655
No 34
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=75.45 E-value=22 Score=34.52 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=86.7
Q ss_pred CceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHC---CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 018530 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (354)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~---Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~ 125 (354)
..+|-=|..+-. |+.......+.++..+++....+. =+-.+|..+..+.. ...+-+.+. .
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~------~ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVG------G 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhC------C
Confidence 456666666543 222111123345555555554432 23466754443331 112223332 1
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHH
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l 205 (354)
..-++|.+|+-..+...+.+.+.+-+.+-++.+|....|++++-.-.....+++++.|.++.+.+.|-.+|.+|.....+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35788999996533334556666667667777886555777776665577889999998887777899999999998776
Q ss_pred HHHH
Q 018530 206 RNAY 209 (354)
Q Consensus 206 ~~~~ 209 (354)
-..+
T Consensus 171 iN~l 174 (360)
T TIGR03597 171 INKL 174 (360)
T ss_pred HHHH
Confidence 5554
No 35
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.89 E-value=18 Score=32.96 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcC-CccEEeccCCCHHHHHHHHHHHHhcCCC
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~G-kir~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (354)
.++.+...+-++ .|..+|+++|++-..-.+.. .-..+.++.++++++.+ .++...++......++.+.+. .
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~------g 87 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA------G 87 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC------C
Confidence 355665555444 57789999988876554321 11356788889999988 677767776556666665443 2
Q ss_pred eeeeccccCccc--------CCcch-----hhHHHHHHHcCcEEEEcc
Q 018530 219 LASNQVNYSLIY--------RKPEE-----NGVKAACDELGITLIAYC 253 (354)
Q Consensus 219 ~~~~Q~~~n~~~--------~~~~~-----~~l~~~~~~~gi~v~a~s 253 (354)
++.+++.+..-+ +..++ ...++++++.|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555554431 11110 147788999999877655
No 36
>PLN02681 proline dehydrogenase
Probab=74.67 E-value=99 Score=31.13 Aligned_cols=170 Identities=13% Similarity=0.110 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 76 AAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
...++.++|.+.|+. +||.=+.|=+..- ..+.-+..++......+.-|+++--.. -..+++.+...++.+
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~a 291 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLERS 291 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHHH
Confidence 456788999999998 6776554433211 333444444443110023455555543 235677777777766
Q ss_pred HHh---hCC-----Cccce-----EEEccCCC-CC----hHH-HHHHHHHHHH---cCCccEEeccCCCHHHHHHHHHHH
Q 018530 155 LFR---LGL-----SSVEL-----YQLHWAGI-WG----NEG-FIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 155 L~r---Lg~-----dyiDl-----~~lH~p~~-~~----~~~-~~~aL~~l~~---~Gkir~iGvSn~~~~~l~~~~~~~ 212 (354)
.+. +|+ -|+|- -.+.||++ ++ .+. .-..++.+.+ .|. -++.|.+||...+..+.+.+
T Consensus 292 ~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~ 370 (455)
T PLN02681 292 EREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKM 370 (455)
T ss_pred HhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHH
Confidence 543 222 23332 11223333 11 122 2233333443 354 48899999999999999988
Q ss_pred HhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 213 ~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
...++++.-..++|-.+..=.+ ++-....+.|-.|.-|-|+|.
T Consensus 371 ~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 371 NELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 8777755433444444433222 355556677988999999884
No 37
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=74.16 E-value=11 Score=34.96 Aligned_cols=178 Identities=13% Similarity=0.191 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCC-CCCCCHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGRQSVLAA 150 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~-~~~~~~~~i~~~ 150 (354)
+.+.+.+.+++.++. +.+++|.-..-.- -+.+. =...|-++|..+. ++.=.-|.-.. ...+.-+-+...
T Consensus 118 sadkvreSv~rSlerLqldyvDilqiHDv--efap~-ld~vl~Etlp~Le------~lk~~Gk~RfiGitgypldvl~~~ 188 (342)
T KOG1576|consen 118 SADKVRESVKRSLERLQLDYVDILQIHDV--EFAPN-LDIVLNETLPALE------ELKQEGKIRFIGITGYPLDVLTEC 188 (342)
T ss_pred hHHHHHHHHHHHHHHhCCceeEEEEeecc--ccccc-ccHHHHHHHHHHH------HHHhcCceeEeeecccchHHHHHH
Confidence 446777888888864 8889887332110 00000 1344555555432 11111111100 011233333333
Q ss_pred HHHHHHhhCCCccceEE--EccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCc
Q 018530 151 LKDSLFRLGLSSVELYQ--LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~--lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~ 228 (354)
+ +-+...+|+++ .|.. +....+++.|+.++..| +||.|-++-.+-.+.+. | |+ +|||
T Consensus 189 a-----e~~~G~~dvvlsY~ry~--l~d~tLl~~~~~~~sk~----vgVi~AsalsmgLLt~~----g-p~-----~wHP 247 (342)
T KOG1576|consen 189 A-----ERGKGRLDVVLSYCRYT--LNDNTLLRYLKRLKSKG----VGVINASALSMGLLTNQ----G-PP-----PWHP 247 (342)
T ss_pred H-----hcCCCceeeehhhhhhc--cccHHHHHHHHHHHhcC----ceEEehhhHHHHHhhcC----C-CC-----CCCC
Confidence 3 44556788887 4432 34567888899998766 78888776555444322 2 22 3566
Q ss_pred ccCCcch--hhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhc-ccCCCceeeeCCCC-HhHHHHH
Q 018530 229 IYRKPEE--NGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNW-ASRPDLHCRVSKKS-PTTVEQN 304 (354)
Q Consensus 229 ~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en 304 (354)
..++-.+ ....++|+++|+.+ |. -++.| ++.|++.+++.|++ .+.++.|
T Consensus 248 aS~Elk~~a~~aa~~Cq~rnv~l--------~k-------------------LA~~Yam~~~~~~~~lvGm~s~~~l~~n 300 (342)
T KOG1576|consen 248 ASDELKEAAKAAAEYCQSRNVEL--------GK-------------------LAMYYAMSLPGVSTVLVGMSSRQLLRIN 300 (342)
T ss_pred CCHHHHHHHHHHHHHHHHcCccH--------HH-------------------HHHHHHHccCCcceEEecCchHHHHHHH
Confidence 5543221 13567888888763 11 23456 56899999999998 6889999
Q ss_pred HHH
Q 018530 305 QGT 307 (354)
Q Consensus 305 ~~~ 307 (354)
++.
T Consensus 301 Lda 303 (342)
T KOG1576|consen 301 LDA 303 (342)
T ss_pred HHh
Confidence 875
No 38
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=73.94 E-value=1.6 Score=41.04 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCcchhhhccccccc
Q 018530 306 GTRRELQQNFHTGRPQLAISPGQCCA 331 (354)
Q Consensus 306 ~~~~~la~~~~~s~~qlAlaw~~c~~ 331 (354)
..+.+||++|+.|++||+|+|..++.
T Consensus 223 ~~l~~iA~K~~kt~aQIlLrw~~q~g 248 (300)
T KOG1577|consen 223 PVLKEIAKKYNKTPAQILLRWALQRG 248 (300)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 35777999999999999999988655
No 39
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=73.84 E-value=2.1 Score=41.26 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCcchhhhcccc
Q 018530 303 QNQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 303 en~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+.++.+.++++++|+|++|+||+|..
T Consensus 265 ~~~~~l~~~a~~~g~t~aq~AL~w~l 290 (346)
T PRK09912 265 NSLRLLNEMAQQRGQSMAQMALSWLL 290 (346)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33567888999999999999999966
No 40
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.62 E-value=46 Score=30.83 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-------CChHHHHHHHHHHHHcCCccEEeccCCC---HHHHHHHH
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAY 209 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-------~~~~~~~~aL~~l~~~Gkir~iGvSn~~---~~~l~~~~ 209 (354)
+.++.+.. ..+-+.|.++|+|+|++-+...... ....+.++.+....+ +..+..+++... .+.++.+.
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 34666644 4555569999999999987654321 123566666666553 346666666543 34444432
Q ss_pred HHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEc
Q 018530 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (354)
Q Consensus 210 ~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (354)
..++ +.+.+.+..-.-+.. .+++++++++|+.|...
T Consensus 93 ----~~gv--~~iri~~~~~~~~~~-~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 ----GSVV--DMIRVAFHKHEFDEA-LPLIKAIKEKGYEVFFN 128 (266)
T ss_pred ----cCCc--CEEEEecccccHHHH-HHHHHHHHHCCCeEEEE
Confidence 2233 333333322111111 25888999999876644
No 41
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=73.40 E-value=29 Score=29.86 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCC--CCCCchHHHHHHHHHhccCCCCCceEEEEeccCC---CCCCCCHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRAS--FGAINSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVLA 149 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~--~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~---~~~~~~~~~i~~ 149 (354)
+++..++-.++..|-..+ ..|||.| +-.|.+++++|++-++++.- .-+-++|-... ...+++++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 556778888899998888 4678877 24456788889888887632 35556654432 1246777765
Q ss_pred HHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHH
Q 018530 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~ 209 (354)
+.+..+.+|.. =|+++==.+.. ....++++++..++.|. .-||++.-+-..+..+.
T Consensus 99 -FsRqveA~g~~-GDvLigISTSG-NS~nVl~Ai~~Ak~~gm-~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 99 -FSRQVEALGQP-GDVLIGISTSG-NSKNVLKAIEAAKEKGM-TVIALTGKDGGKLAGLL 154 (176)
T ss_pred -HHHHHHhcCCC-CCEEEEEeCCC-CCHHHHHHHHHHHHcCC-EEEEEecCCCccccccc
Confidence 44555666653 37776655433 35679999999999996 56999888877776654
No 42
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=72.50 E-value=53 Score=35.26 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=46.6
Q ss_pred EEccCCCCChHHHHHHHH--HHHHcCCccEEeccCCCHHHHHH-----------HHHHHHhcCCCeeeeccccCcccCCc
Q 018530 167 QLHWAGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRN-----------AYEKLKKRGIPLASNQVNYSLIYRKP 233 (354)
Q Consensus 167 ~lH~p~~~~~~~~~~aL~--~l~~~Gkir~iGvSn~~~~~l~~-----------~~~~~~~~~~~~~~~Q~~~n~~~~~~ 233 (354)
.+|..++...+.++++++ ++.+ .|.-+|++.-..+.++. -.+.+-..|. ++++=+.++=..+
T Consensus 241 ~vhGHnp~l~~~iv~~~~~~el~~--gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~TGa-vD~~VvD~QCi~p-- 315 (781)
T PRK00941 241 LVIGHNVAPGTYIIDYLEENGLTD--KVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRSGI-PDVIVVDEQCVRT-- 315 (781)
T ss_pred EEECCCchHHHHHHHHHhCcchhh--CceEEEEecccchHhhhccCCcccCcHHHHHHHHHcCC-CcEEEEecccCcc--
Confidence 334433333456666665 4444 67777887665543311 0011111232 4444444443333
Q ss_pred chhhHHHHHHHcCcEEEEcccCCC
Q 018530 234 EENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
++.+.|++.|.++|+.++-.+
T Consensus 316 ---~L~eiA~~ygt~lItTs~k~~ 336 (781)
T PRK00941 316 ---DILEEAKKLGIPVIATNDKIC 336 (781)
T ss_pred ---cHHHHHHHhCCCEEEeccccc
Confidence 489999999999999999864
No 43
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=72.24 E-value=75 Score=30.39 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccC----------------CCCCCCCCchHHHHHHHHHhccCCCCCceEEEEecc
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYG----------------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg----------------~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~ 135 (354)
.+.+.-.++.++|-+.|+-+|-|-..+. .|+. +-..+|-...+ .. ..++++|-.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~----~~~plik~iA~-~~-----kPiIlSTGm 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI----NDLPLIKYIAK-KG-----KPIILSTGM 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc----cChHHHHHHHh-cC-----CCEEEEccc
Confidence 3456678899999999999987754332 1211 11333433222 22 467888876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC--ChH-HHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHH
Q 018530 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 136 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~--~~~-~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 212 (354)
.+-+.+.++++...++ |. .|+.+||..... +.+ --+.+|..|.+.= ---||+|.|+...+.-+...+
T Consensus 157 ------a~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvA 226 (347)
T COG2089 157 ------ATIEEIEEAVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAVA 226 (347)
T ss_pred ------ccHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHHH
Confidence 4567788888765554 33 399999986542 222 2233344443332 334999999988666665544
No 44
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=72.19 E-value=39 Score=31.84 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=66.3
Q ss_pred HHHhhCCCccceEEEccCCC------CChHHHHHHHHHHHHcCCc-cEEeccCC---CHHHHHHHHHHHHhcCCCeeeec
Q 018530 154 SLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 154 SL~rLg~dyiDl~~lH~p~~------~~~~~~~~aL~~l~~~Gki-r~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
..++.| .|++.+|-... .+..+..+.|+++.+.=+| -.||-|.. +++.++++.+.++....-+..
T Consensus 159 ~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS-- 233 (403)
T COG2069 159 CVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS-- 233 (403)
T ss_pred HHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec--
Confidence 345566 47888885432 4578999999999998887 45888876 678999999887644322222
Q ss_pred cccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
...+ -+.+ .+.+.+.++|-.|++|+++.-
T Consensus 234 anld---lDy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 234 ANLD---LDYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cccc---cCHH--HHHHHHHhcCceEEEeeccCh
Confidence 2221 1222 489999999999999998864
No 45
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=69.35 E-value=1.7 Score=41.71 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.6
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|++| .-||++|+|++++.
T Consensus 302 ~CvgCGrC~~~CP~~idi~~~i~ 324 (334)
T TIGR02910 302 MCVGCGRCDDICPEYISFSNCIN 324 (334)
T ss_pred ccCCcCchhhhCCCCCCHHHHHH
Confidence 59999999 66999999999874
No 46
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=68.70 E-value=25 Score=37.54 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=48.9
Q ss_pred EEccCCCCChHHHHHHHH--HHHHcCCccEEeccCCCHHHHHHH------------HHHHHhcCCCeeeeccccCcccCC
Q 018530 167 QLHWAGIWGNEGFIDGLG--DAVEQGLVKAVGVSNYSEKRLRNA------------YEKLKKRGIPLASNQVNYSLIYRK 232 (354)
Q Consensus 167 ~lH~p~~~~~~~~~~aL~--~l~~~Gkir~iGvSn~~~~~l~~~------------~~~~~~~~~~~~~~Q~~~n~~~~~ 232 (354)
.+|..++...+.+++.++ ++.++ |.-+|++.-..+.+ +. .+.+-..|. ++++=+.++=..+
T Consensus 237 ~vhGHnp~l~~~iv~~~~~~~l~~~--I~l~GiCCTg~e~~-R~~~gv~~~Gn~~~qe~~i~TGa-vD~~VvD~QCi~p- 311 (784)
T TIGR00314 237 LVIGHNVMPGRPIADYLEENGMEDE--VELCGICCTAIDMT-RYNAKAKIVGPLSRQLRVIRAGV-ADVIIVDEQCIRA- 311 (784)
T ss_pred EEECCCchHHHHHHHHHhChhHHHH--hceeeeeccccHHh-hhccCCcccCcHHHHHHHHHcCC-CcEEEEecccCcc-
Confidence 444444444556666666 55554 77788876655433 21 011111222 3444444443333
Q ss_pred cchhhHHHHHHHcCcEEEEcccCC-CCCC
Q 018530 233 PEENGVKAACDELGITLIAYCPIA-QDSP 260 (354)
Q Consensus 233 ~~~~~l~~~~~~~gi~v~a~spl~-~G~L 260 (354)
++.+.|+..+..+|+.++.+ .|+.
T Consensus 312 ----~l~~~a~c~~tklItTs~ka~~gl~ 336 (784)
T TIGR00314 312 ----DILEECKKMGIPLIATNDKACLGLP 336 (784)
T ss_pred ----cHHHHHHhcCCeEEEcchHHhcCCC
Confidence 58999999999999999986 4553
No 47
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.48 E-value=39 Score=33.51 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCC-----ccceEEEccCCCCC-----hHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHWAGIWG-----NEGF 179 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~d-----yiDl~~lH~p~~~~-----~~~~ 179 (354)
|+.|-++|++...+.+-+=|+|.|-... +-+-..++...++++.+ .+.++.++.|+... .+.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~-------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT-------ETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch-------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 7888888887654332234667666532 22222333444444321 35677888776522 2334
Q ss_pred HHHHHHH-------HHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 180 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 180 ~~aL~~l-------~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
+++|.+. ++.++|--||-++.+...++++.+..+..|+++..
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPII 187 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4444332 23456877887766444455555556666765544
No 48
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=67.79 E-value=1.1e+02 Score=28.96 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
..+.++..++++.+.+.|+..+.- .| |+.-=...-.+++.. +++... -+++.|+|-.. ...+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~l---tG-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~-----ll~~----- 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRL---TG-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGL-----LLAR----- 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE---EC-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCch-----hHHH-----
Confidence 456788999999999999987763 23 321000011223322 232210 13678888542 1111
Q ss_pred HHHHHHhhCCCccceEEEccCCC----------CChHHHHHHHHHHHHcCCc----cEEeccCCCHHHHHHHHHHHHhcC
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRG 216 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~----------~~~~~~~~aL~~l~~~Gki----r~iGvSn~~~~~l~~~~~~~~~~~ 216 (354)
.-+.|++.|+++|- +-++..++ ...+.+++.++.+++.|.- ..+-+.+.+.+++.++.+.+...+
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERG 182 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 23456666765443 22343322 1357899999999999852 223445678888999999888777
Q ss_pred CCeee
Q 018530 217 IPLAS 221 (354)
Q Consensus 217 ~~~~~ 221 (354)
+.+.+
T Consensus 183 v~~~~ 187 (334)
T TIGR02666 183 VTLRF 187 (334)
T ss_pred CeEEE
Confidence 65444
No 49
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=67.23 E-value=1e+02 Score=28.28 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCCh-HHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~-~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
.+++.+.+..++.++ -|-|+||+=. .|...+. ++..+.+..+.+.-. .-|.|-+++++.++.+++.+. |. .-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G~-~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--GK-CV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--CC-cE
Confidence 456667777666665 5999999854 2332222 232233222222212 237888999999999987531 22 22
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
+|-+ +....+.....+++.+++.|..++.+..-..|.
T Consensus 96 INsI--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g~ 132 (252)
T cd00740 96 VNSI--NLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQ 132 (252)
T ss_pred EEeC--CCCCCccccHHHHHHHHHhCCCEEEeccCCCCC
Confidence 3222 222211111258899999999998876544443
No 50
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=67.21 E-value=1.2e+02 Score=28.99 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCC
Q 018530 112 LLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL 191 (354)
Q Consensus 112 ~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gk 191 (354)
.+|-++-..... .++.+.++.|.... .-...+...+++..+.+|. ++.+ ..+...+.....+.++.++.+|
T Consensus 10 ~~~~~~~~~~~~-~~~~i~~v~k~~~~---pf~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~- 80 (336)
T PRK15408 10 ALGIALISMTVQ-AAERIAFIPKLVGV---GFFTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG- 80 (336)
T ss_pred HHHHHHhccccc-CCcEEEEEECCCCC---HHHHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-
Confidence 345444443332 26788899997532 2345678889999999984 5543 3344344566778899999876
Q ss_pred ccEEeccCCCHHHHHHHHHHHHhcCCCeeee
Q 018530 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (354)
Q Consensus 192 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (354)
+..|-++..++..+...++.+...++|+..+
T Consensus 81 vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 81 YNAIIVSAVSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHCCCeEEEe
Confidence 8889898888877777777777777765544
No 51
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=66.10 E-value=4.3 Score=38.49 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCcchhhhcccc
Q 018530 303 QNQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 303 en~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+.++.+.++++++|+|++|+||+|..
T Consensus 249 ~~~~~l~~ia~~~g~s~aqlal~w~l 274 (317)
T TIGR01293 249 ARLKDLQAIAERLGCTLPQLAIAWCL 274 (317)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 33456788899999999999999955
No 52
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=65.81 E-value=1.1e+02 Score=28.15 Aligned_cols=106 Identities=8% Similarity=0.081 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
..|.+...+.++..++.|++-+-..-.-|.+.+-...+=++++..+.+... .++-|..-++. .+-+...+.
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~~----~~~~~~i~~ 84 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVGA----NSTREAIEL 84 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecCC----ccHHHHHHH
Confidence 567889999999999999998876555554433111111334444554443 23444444432 122211111
Q ss_pred HHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHc
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~ 189 (354)
. +..+.+|. |-+++.-|.. .+.+++++.+.++.+.
T Consensus 85 a-~~a~~~Ga---d~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 85 A-RHAEEAGA---DGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred H-HHHHHcCC---CEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 1 12244453 5555554443 2345566666666554
No 53
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.37 E-value=78 Score=29.38 Aligned_cols=151 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccceEEEccCC---------CCChHHHHHHHHHHHHcCCccE-------EeccCCCHHHHHHHHHH
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAG---------IWGNEGFIDGLGDAVEQGLVKA-------VGVSNYSEKRLRNAYEK 211 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~---------~~~~~~~~~aL~~l~~~Gkir~-------iGvSn~~~~~l~~~~~~ 211 (354)
...+-..|.++|+++|++- .|. ..+..+.++.+.++...-++.. +|++.+..+..+..++.
T Consensus 23 ~~~ia~~L~~~Gv~~iE~G---~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 23 MLPIAEALDEAGFFSLEVW---GGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHcCCCEEEcc---CCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Q ss_pred HHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCCCcee
Q 018530 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRPDLHC 291 (354)
Q Consensus 212 ~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (354)
+...++...-+-...|-++.-.. .+++++++|+.+...-.+..+.......+...+................-+
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~---~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G--- 173 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEV---AIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG--- 173 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHH---HHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---
Q ss_pred eeCCCCHhHHHHHHHHHHH
Q 018530 292 RVSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 292 ~~~~~~~~~~~en~~~~~~ 310 (354)
.+.|+++.+.++.+.+
T Consensus 174 ---~~~P~~v~~lv~~l~~ 189 (275)
T cd07937 174 ---LLTPYAAYELVKALKK 189 (275)
T ss_pred ---CCCHHHHHHHHHHHHH
No 54
>PRK06740 histidinol-phosphatase; Validated
Probab=64.67 E-value=1.3e+02 Score=28.84 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=55.3
Q ss_pred HHHHHHHHhhCCCccceEEEccCCCC--------------C----hHHHHHHHHHHHHcCCccEEecc------CCC---
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGIW--------------G----NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~~--------------~----~~~~~~aL~~l~~~Gkir~iGvS------n~~--- 201 (354)
..++..|+....||+ +.-+|..+.+ + .....+.+.++.+.|++..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345566666777777 7778875421 0 12355778888888887776622 111
Q ss_pred ---HHHHHHHHHHHHhcCCCeeeecc-ccC--cccCCcchhhHHHHHHHcCcEEE
Q 018530 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLI 250 (354)
Q Consensus 202 ---~~~l~~~~~~~~~~~~~~~~~Q~-~~n--~~~~~~~~~~l~~~~~~~gi~v~ 250 (354)
...++++.+.+...+..+.+|-. .+. ....-+. ..+++.|++.|+.++
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~-~~il~~~~e~Gv~~t 288 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPS-PLFLQVLAKHEVPIT 288 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcC-HHHHHHHHHCCCeEE
Confidence 13555666666666666666553 111 1111111 136777777777653
No 55
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=64.35 E-value=62 Score=28.53 Aligned_cols=153 Identities=17% Similarity=0.169 Sum_probs=93.3
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH----
Q 018530 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS---- 154 (354)
Q Consensus 79 ~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S---- 154 (354)
++|..-++.|-+.+|-.. |+| .+-+.|++.. ++.. .| -..+++.+.+++.+-
T Consensus 5 ~~I~~~I~pgsrVLDLGC--GdG----------~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGC--GDG----------ELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCC--Cch----------HHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 356677889999999764 332 1335565531 1110 11 235666666665444
Q ss_pred -------HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 155 -------LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 155 -------L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
|....-+..|.+.+..-= .......+.|+++.+-|+---|++.||.-+..+.-+- ..|--|..-+++|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtL-Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~---~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTL-QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLL---LRGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHH-HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHH---hcCCCCCCCCCCCc
Confidence 444444444544443210 0122344557777888987779999998766654322 12345777888888
Q ss_pred cccCCcch----hhHHHHHHHcCcEEEEcccCCCCC
Q 018530 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 228 ~~~~~~~~----~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
-++...-. .+..++|++.|+.+.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 77654322 368899999999999999988765
No 56
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=64.13 E-value=1.4e+02 Score=28.51 Aligned_cols=133 Identities=18% Similarity=0.091 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
+.++..++++...+. ||+.+--+ .|+. ...+...+-+.++..........+.|.|+... ..+..+...+
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilS----GGDP--l~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~el 189 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILT----GGDP--LVLSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPAL 189 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEe----CCCc--ccCCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHHH
Confidence 446677777766544 77644211 1211 00112333344433321101245677887632 2334444455
Q ss_pred HHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcCCccE----E--eccCCCHHHHHHHHHHHHhcCCC
Q 018530 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKA----V--GVSNYSEKRLRNAYEKLKKRGIP 218 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~Gkir~----i--GvSn~~~~~l~~~~~~~~~~~~~ 218 (354)
-+.|++.|.. ..+-+|...+ .-.++++++++.|++.|..-. + |+ |.+.+.+.++.+.+...++.
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCe
Confidence 5566666732 3467776433 114778899999999985211 1 33 56677777777666666654
No 57
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=62.93 E-value=2.8 Score=41.25 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.7
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
+|..|+.| ..||+.|+||++++
T Consensus 359 ~c~lcg~C~evCPv~Ipl~eli~ 381 (459)
T COG1139 359 ACSLCGACTEVCPVKIPLPELIR 381 (459)
T ss_pred hhccccCCCCcCCCCCCHHHHHH
Confidence 67778889 67999999999875
No 58
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.82 E-value=51 Score=28.99 Aligned_cols=150 Identities=12% Similarity=-0.015 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.|++++.++++.+++.|++..|. | +..+..+++..+....+++++++-=. ...+.++..+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~~------~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHVM------MSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHHH------HHHHHHHHHH
Confidence 35688999999999999887764 2 44455555554422223444432211 2334455555
Q ss_pred HHHHHhhCCC----ccceEEEccCC-CCChHHHHHHHHHHHHcCC-ccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccc
Q 018530 152 KDSLFRLGLS----SVELYQLHWAG-IWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (354)
Q Consensus 152 e~SL~rLg~d----yiDl~~lH~p~-~~~~~~~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (354)
+.....+..+ .---+++-.+. +.-.-+..-.-.-++..|. |.++|. +.+++.+.+.... ..|+++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEc
Confidence 5444444321 00111222111 1111223333344556674 666774 3444444444332 367777777
Q ss_pred cCcccCCcchhhHHHHHHHcCc
Q 018530 226 YSLIYRKPEENGVKAACDELGI 247 (354)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi 247 (354)
+.....-..-.++++.+++.|.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 6655443333457777777753
No 59
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=62.68 E-value=4.3 Score=37.97 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCcchhhhcccc
Q 018530 306 GTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 306 ~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
.++.+|+++||.|++|++|+|..
T Consensus 202 ~~l~~Ia~k~g~t~AQv~L~W~i 224 (280)
T COG0656 202 PVLAEIAKKYGKTPAQVALRWHI 224 (280)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHH
Confidence 47889999999999999999944
No 60
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=62.53 E-value=8 Score=37.11 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=33.1
Q ss_pred hhhhhhcccc-hhhhhhhc-ccCCCceeeeCCCC-HhHHHHHHHHHH
Q 018530 266 LKTSCSHWKV-YTTESTNW-ASRPDLHCRVSKKS-PTTVEQNQGTRR 309 (354)
Q Consensus 266 ~~~~~~~~~~-~~~~~~~~-~~~~~v~~~~~~~~-~~~~~en~~~~~ 309 (354)
+..++.+++. .++.++.| +.++.+...+++.+ .+|++||+.++.
T Consensus 263 ~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~ 309 (336)
T KOG1575|consen 263 LSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALS 309 (336)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhh
Confidence 4567777754 57788999 67777666666666 899999999643
No 61
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=62.19 E-value=5.7 Score=37.84 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcchhhhcccc
Q 018530 304 NQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 304 n~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
.++.++++++++|+|++|+||+|-.
T Consensus 243 ~~~~l~~~a~~~g~t~aq~ALawvl 267 (316)
T COG0667 243 ILRALEELAKELGATPAQVALAWVL 267 (316)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444677888999999999999966
No 62
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=61.31 E-value=92 Score=30.42 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=64.3
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHHcCC----ccEEecc--CCCHHHHHHHHHHHHhcC----CCeeeec
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVS--NYSEKRLRNAYEKLKKRG----IPLASNQ 223 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~~Gk----ir~iGvS--n~~~~~l~~~~~~~~~~~----~~~~~~Q 223 (354)
+-||.|+. ++.+++++++.+..+... +-|+=+. |-++++..++.+.++... .+..++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 67899875 357899999988865432 2222222 667888888888775321 1568999
Q ss_pred cccCcccCCcc----h---hhHHHHHHHcCcEEEEcccCCCCC
Q 018530 224 VNYSLIYRKPE----E---NGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 224 ~~~n~~~~~~~----~---~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
++||+...... . ....+..+++||.+......|.-+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 99999643221 1 146677889999999998887543
No 63
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=61.24 E-value=5.7 Score=38.20 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCcchhhhcccc
Q 018530 304 NQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 304 n~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
.++.+.++++++++|++|+||+|..
T Consensus 273 ~~~~l~~la~~~g~t~aqval~w~l 297 (346)
T PRK10625 273 AVAAYVDIAKRHGLDPAQMALAFVR 297 (346)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3566888999999999999999955
No 64
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=60.55 E-value=1.3e+02 Score=29.00 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCccce---------EEEccCCCCChHHHHHHHHHHHHcCCccEEec-cCCCHHHHHH
Q 018530 138 LPWRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-SNYSEKRLRN 207 (354)
Q Consensus 138 ~~~~~~~~~i~~~le~SL~rLg~dyiDl---------~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGv-Sn~~~~~l~~ 207 (354)
..+.++.+.+.+-++. |.+.|+++|.+ -+...+...+..+.++.+.+..+.-++..+-+ ...+.+.++.
T Consensus 18 ~~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 18 VRHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CCCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHH
Q ss_pred HHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCC
Q 018530 208 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRP 287 (354)
Q Consensus 208 ~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (354)
+.+. ..+.+.+..+.-+.+... +.+++++++|+.+..+ +..........+...++...............-
T Consensus 97 a~~~------gvd~iri~~~~~e~~~~~-~~i~~ak~~G~~v~~~--l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 167 (337)
T PRK08195 97 AYDA------GVRVVRVATHCTEADVSE-QHIGLARELGMDTVGF--LMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA 167 (337)
T ss_pred HHHc------CCCEEEEEEecchHHHHH-HHHHHHHHCCCeEEEE--EEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC
Q ss_pred CceeeeCCCCHhHHHHHHHHHHH
Q 018530 288 DLHCRVSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 288 ~v~~~~~~~~~~~~~en~~~~~~ 310 (354)
+ .+.|+++.+.++.+.+
T Consensus 168 G------~~~P~~v~~~v~~l~~ 184 (337)
T PRK08195 168 G------ALLPEDVRDRVRALRA 184 (337)
T ss_pred C------CCCHHHHHHHHHHHHH
No 65
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=59.76 E-value=90 Score=33.38 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=49.2
Q ss_pred EEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHH-----------HHHHHHhcCCCeeeeccccCcccCCcc
Q 018530 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRN-----------AYEKLKKRGIPLASNQVNYSLIYRKPE 234 (354)
Q Consensus 166 ~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~-----------~~~~~~~~~~~~~~~Q~~~n~~~~~~~ 234 (354)
+.+|.+++.....+.+++++---+..|.-.|++.-..+..+. -.+.+-..|. ++++=+.++=..+
T Consensus 203 Ivv~GHnp~l~~~iv~~~ee~~l~~~i~~~G~cCt~~d~~R~~~~~~~~g~~~~qe~~i~tG~-~D~~vvD~qCi~~--- 278 (731)
T cd01916 203 ILVIGHNVAPGAEIMDYLEENGLEDKVEVGGICCTAIDLTRYNEKAKVVGPLSRQLKVVRSGI-ADVVVVDEQCIRA--- 278 (731)
T ss_pred EEEECCCCccHHHHHHHHhccchhhCceEEEEecccchHhhhccCCCccCcHHHHHHHHHcCC-CcEEEEecccCcc---
Confidence 455666555566677766643333377778887655443311 0011111222 3444344333322
Q ss_pred hhhHHHHHHHcCcEEEEcccCCC
Q 018530 235 ENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 235 ~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
++.+.|++.|.++++.++-.+
T Consensus 279 --~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 279 --DILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred --cHHHHHHHhCCCEEEechhhh
Confidence 599999999999999998765
No 66
>PLN02444 HMP-P synthase
Probab=59.75 E-value=83 Score=32.35 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
+.+.+.+.+.|++..+ +-||.+-+|.- -..+.++.++ + |..|+-+-.-..+....-.-
T Consensus 296 ~lt~d~~~d~ieeQae----qGVDfmTIH~G------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~-------- 353 (642)
T PLN02444 296 NLTWEVFRETLIEQAE----QGVDYFTIHAG------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAY-------- 353 (642)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEChh------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHc--------
Confidence 4666777777777666 45788888853 1344444444 3 66777666655555443221
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCCCceeeeCCCC--H
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--P 298 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 298 (354)
-.=|+++...+ ++++.|++++|.+--=--|--|-+..... ......... ...+.+-+...+|-+.+-|.- |
T Consensus 354 ---~kENPlYe~FD--~ileI~k~YDVtlSLGDGLRPG~iaDA~D-~AQ~~EL~t-LGELtkrA~e~gVQVMIEGPGHVP 426 (642)
T PLN02444 354 ---HKENFAYEHWD--DILDICNQYDIALSIGDGLRPGSIYDAND-TAQFAELLT-QGELTRRAWEKDVQVMNEGPGHVP 426 (642)
T ss_pred ---CCcCchHHHHH--HHHHHHHHhCeeeeccCCcCCCccccCCc-HHHHHHHHH-HHHHHHHHHHcCCeEEEECCCcCc
Confidence 11245554433 59999999999985333333333322100 000000000 011122233457888877766 3
Q ss_pred -hHHHHHHHHHHHHHH
Q 018530 299 -TTVEQNQGTRRELQQ 313 (354)
Q Consensus 299 -~~~~en~~~~~~la~ 313 (354)
.++++|+++-.++..
T Consensus 427 l~~I~~Nv~lqk~lC~ 442 (642)
T PLN02444 427 LHKIPENMQKQLEWCN 442 (642)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 889999988766544
No 67
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=59.19 E-value=46 Score=30.33 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=64.1
Q ss_pred cCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCC
Q 018530 48 VTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPE 126 (354)
Q Consensus 48 vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R 126 (354)
-|+|-+||..+.+. + +++.|++ +|-..+-.|----+-... ..+..+-+.| ++
T Consensus 8 ~SRL~lGTgky~s~-------------~----~m~~ai~aSg~evvTvalRR~~~~~~---~~~~~~~~~i-------~~ 60 (247)
T PF05690_consen 8 RSRLILGTGKYPSP-------------E----VMREAIEASGAEVVTVALRRVNLGSK---PGGDNILDYI-------DR 60 (247)
T ss_dssp S-SEEEE-STSSSH-------------H----HHHHHHHHTT-SEEEEECCGSTTTS----TTCHHCCCCT-------TC
T ss_pred ecceEEecCCCCCH-------------H----HHHHHHHHhCCcEEEEEEecccCCCC---CCCccHHHHh-------cc
Confidence 36889999876432 2 4555554 577776665322111000 0012222222 23
Q ss_pred ceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCc
Q 018530 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 127 ~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gki 192 (354)
+++.+.--.. ..++.+...+..+-..+-+++++|-|=.+..+.. .+..+++++-+.|+++|-+
T Consensus 61 ~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 61 SGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp CTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred cCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 4555444332 4678888888888899999999888766665554 4578999999999999964
No 68
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.84 E-value=90 Score=31.07 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=57.7
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCC-CccceEEEccCCC
Q 018530 95 AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGI 173 (354)
Q Consensus 95 A~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~-dyiDl~~lH~p~~ 173 (354)
.-.||. |+.|-++|++...+.+.+=++|.|-.-. ..-.+.+...+++.-++... ..+.++.++.|..
T Consensus 64 d~V~Gg---------~~~L~~ai~~~~~~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 64 AAVFGG---------QNNLIDGLKNAYAVYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred ceEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 456776 8888888887665432344667766532 22233333333332233211 1378899988865
Q ss_pred C-----ChHHHHHHHHH-HHH-------cCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 174 W-----GNEGFIDGLGD-AVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 174 ~-----~~~~~~~aL~~-l~~-------~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
. +.+.++++|.+ +.. .++|--||-.+...+.+.++.+..+..|+++.
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 2 23344444432 222 23455565222221225555555666677653
No 69
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=57.99 E-value=69 Score=28.66 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
++.+. +..+-+.|.++|+++|++- .|.. ....+.++.+.+.... .+..+++......++.+.+.+...+.+..
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 45554 4445556999999999988 2211 1233445555555555 56667777888888887776666665544
Q ss_pred eeccccCcccCC------cc-----hhhHHHHHHHcCcEE
Q 018530 221 SNQVNYSLIYRK------PE-----ENGVKAACDELGITL 249 (354)
Q Consensus 221 ~~Q~~~n~~~~~------~~-----~~~l~~~~~~~gi~v 249 (354)
.+-...|..... .+ -.+.+.++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444444431110 00 024788999999998
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.69 E-value=40 Score=31.64 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC-hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
++.+ -+..+-+.|.++|+++|++-.++.|...+ ..+.++.+..+.+...++...+. .+...++.+.+. +++..
T Consensus 23 ~s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTA-DKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 3444 34456667999999999997555554322 23346666666555456666655 477778777653 33321
Q ss_pred eeccccCcc------cCCcch-----hhHHHHHHHcCcEEEE
Q 018530 221 SNQVNYSLI------YRKPEE-----NGVKAACDELGITLIA 251 (354)
Q Consensus 221 ~~Q~~~n~~------~~~~~~-----~~l~~~~~~~gi~v~a 251 (354)
.+-+..|.. ....++ .+.+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 111222211 111111 2588999999998863
No 71
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=56.52 E-value=1.9e+02 Score=27.76 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCccce---------EEEccCCCCChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHH
Q 018530 138 LPWRLGRQSVLAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRN 207 (354)
Q Consensus 138 ~~~~~~~~~i~~~le~SL~rLg~dyiDl---------~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~ 207 (354)
..+.++.+.+.+-++. |.+.|+|+|.+ -+-+.+...+..+.++++.+..+.-++..+-+.+. +.+.++.
T Consensus 17 ~~~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 17 IRHQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CCCcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHH
Q ss_pred HHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCC
Q 018530 208 AYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRP 287 (354)
Q Consensus 208 ~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (354)
+.+. ..+.+.+..+.-+-+... +.+++++++|+.+..+-..+ .......+...++...............-
T Consensus 96 a~~~------gvd~iri~~~~~e~d~~~-~~i~~ak~~G~~v~~~l~~s--~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 96 AYDA------GARTVRVATHCTEADVSE-QHIGMARELGMDTVGFLMMS--HMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred HHHC------CCCEEEEEeccchHHHHH-HHHHHHHHcCCeEEEEEEcc--cCCCHHHHHHHHHHHHhcCCCEEEEccCC
Q ss_pred CceeeeCCCCHhHHHHHHHHHHH
Q 018530 288 DLHCRVSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 288 ~v~~~~~~~~~~~~~en~~~~~~ 310 (354)
+ .+.|+++.+.++.+++
T Consensus 167 G------~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 167 G------AMLPDDVRDRVRALKA 183 (333)
T ss_pred C------CCCHHHHHHHHHHHHH
No 72
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=56.35 E-value=53 Score=32.62 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEc-cCCC-----------CC-h---HHHHHHH-HHHHHcCCccEEeccCCCH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WG-N---EGFIDGL-GDAVEQGLVKAVGVSNYSE 202 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH-~p~~-----------~~-~---~~~~~aL-~~l~~~Gkir~iGvSn~~~ 202 (354)
.+.+.+.+.++..++ |+.|+|.+|.+- -|.. .+ . .+.++.. +.|.+.|. +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 567777777777665 789999999773 2221 11 1 2344443 44556676 9999999975
No 73
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.27 E-value=32 Score=30.58 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHhhCCCccceEEEcc-CCCCChHHHHHHHHHHHHcCCccEEecc-CCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 154 SLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 154 SL~rLg~dyiDl~~lH~-p~~~~~~~~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
.+..+|.|||=+.+... |...+.+.+ ..+.+.. .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 34569999999875442 322333333 3333332 3568889996 7788888888664 4789999975
No 74
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=56.09 E-value=81 Score=31.06 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEec--------cCCCCCCCC
Q 018530 73 KMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLG 143 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK--------~~~~~~~~~ 143 (354)
+.+.-.+-++.|.+.|-. ..|-+. -|+ -..+-+.+-+. ..+-|.|= ......+.+
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLSt-ggd---------l~~iR~~il~~------~~vpvGTVPiYqa~~~~~~~~~~~t 137 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLST-GGD---------LDEIRRAILEN------SPVPVGTVPIYQAAIRKGGSIVDMT 137 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE----STT---------HHHHHHHHHHT-------SS-EEE-HHHHHHHHTTT-GGG--
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCC-CCC---------HHHHHHHHHHh------CCCccccchHHHHHHHhCCChhhCC
Confidence 334445667899999976 556543 223 33333433322 23334331 111124678
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeec
Q 018530 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 144 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
.+.+.+.+++..+. -||.+-+|.- -..+.++.++++|++ .|+-+-.-..+......-
T Consensus 138 ~d~~~~~ie~qa~~----GVDfmtiH~g------it~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~n----------- 194 (420)
T PF01964_consen 138 EDDFFDVIEKQAKD----GVDFMTIHCG------ITRETLERLKKSGRI--MGIVSRGGSILAAWMLHN----------- 194 (420)
T ss_dssp HHHHHHHHHHHHHH----T--EEEE-TT--------GGGGGGGT--TSS--S----HHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHc----CCCEEEEccc------hhHHHHHHHhhhccc--cCccccchHHHHHHHHhc-----------
Confidence 99999999998884 5899999964 246677788888866 455555444444443221
Q ss_pred cccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchh---hhhhhhhcccchhhhhhhcccCCCceeeeCCCC---
Q 018530 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAA---RLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--- 297 (354)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 297 (354)
..=||++...+ ++++.|+++++.+.--..|--|-+.... ++.++. . ..++.+-+...+|-+.+-|.-
T Consensus 195 ~~ENPly~~fD--~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~----~-lgeL~~rA~e~gVQvMVEGPGHVP 267 (420)
T PF01964_consen 195 GKENPLYEHFD--RLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELI----I-LGELVKRAREAGVQVMVEGPGHVP 267 (420)
T ss_dssp TS--HHHHTHH--HHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHH----H-HHHHHHHHHHTT--EEEEE-SB--
T ss_pred CCcCcHHHhHH--HHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHH----H-HHHHHHHHHHCCCeEEeeCCCCCC
Confidence 12245554443 5999999999998644444444443211 111100 0 001111123456777766654
Q ss_pred HhHHHHHHHHHHHHHH
Q 018530 298 PTTVEQNQGTRRELQQ 313 (354)
Q Consensus 298 ~~~~~en~~~~~~la~ 313 (354)
..+++.|+++-.++..
T Consensus 268 l~~I~~nv~lqK~lc~ 283 (420)
T PF01964_consen 268 LNQIEANVKLQKRLCH 283 (420)
T ss_dssp GGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3888889887766543
No 75
>PLN02587 L-galactose dehydrogenase
Probab=55.99 E-value=9.3 Score=36.14 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcchhhhcccc
Q 018530 299 TTVEQNQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 299 ~~~~en~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+.+.+.++.+.++++++++|++|+||+|..
T Consensus 225 ~~~~~~~~~l~~~a~~~~~s~aq~al~~~l 254 (314)
T PLN02587 225 PELKSACAAAATHCKEKGKNISKLALQYSL 254 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566677788999999999999999843
No 76
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=55.66 E-value=6.6 Score=36.51 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCcchhhhcccc
Q 018530 306 GTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 306 ~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+.+.++++++|+|++|+||+|..
T Consensus 200 ~~l~~ia~~~g~s~aq~aL~w~l 222 (275)
T PRK11565 200 KVIRDLADKYGKTPAQIVIRWHL 222 (275)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 56888999999999999999855
No 77
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=55.35 E-value=2.1e+02 Score=28.01 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEec--------cCCCCCCCC
Q 018530 73 KMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--------FAALPWRLG 143 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK--------~~~~~~~~~ 143 (354)
+.++-.+-+..|.+.|.. ..|-+. .|+ -..+.+++-+. .++=|-|= ......+.+
T Consensus 76 ~i~~EveK~~~A~~~GADtvMDLSt-Ggd---------l~eiR~~ii~~------s~vPvGTVPIYqA~~~~~~~~~~~t 139 (432)
T COG0422 76 DIDEEVEKAVWAIKWGADTVMDLST-GGD---------LHEIREWIIRN------SPVPVGTVPIYQALEEVNGKVEDLT 139 (432)
T ss_pred CHHHHHHHHHHHHHhCcceeEeccc-CCC---------HHHHHHHHHhc------CCCCcCCchHHHHHHHHhcchhhCC
Confidence 334445667889999964 566553 344 44444444322 11112111 000113578
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeec
Q 018530 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 144 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
.+.+...++...+ +-+|.+-+|.- -.++.++.+++.|++ .|+.+-.-..+....-. .
T Consensus 140 ~d~~~~~v~~qa~----~GVdfmTIHaG------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~-----------~ 196 (432)
T COG0422 140 EDDFFDTVEKQAE----QGVDFMTIHAG------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLH-----------N 196 (432)
T ss_pred HHHHHHHHHHHHH----hCCcEEEeehh------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHH-----------c
Confidence 8888888888877 46899999953 368889999999965 67766655555443221 1
Q ss_pred cccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCch---hhhhhhhhcccchhhhhhhcccCCCceeeeCCCC--H
Q 018530 224 VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFA---ARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--P 298 (354)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 298 (354)
..=|+++...+ ++++.|+++++.+----.|.-|-+... .++.++. . ...+.+-+...+|-+.+-|.. |
T Consensus 197 ~~ENply~~fd--~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~EL~----t-lgeL~krA~~~gVQvmvEGPGHvp 269 (432)
T COG0422 197 HKENPLYEHFD--ELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFAELI----T-LGELTKRAWEAGVQVMVEGPGHVP 269 (432)
T ss_pred CCcCchhhhHH--HHHHHHHHhCeeeeccCCCCCCcccCCccHHHHHHHH----H-HHHHHHHHHHcCCEEEEECCCcCc
Confidence 12255555444 599999999998853333333333221 1111100 0 011112223467777777766 2
Q ss_pred -hHHHHHHHHHHHHHH
Q 018530 299 -TTVEQNQGTRRELQQ 313 (354)
Q Consensus 299 -~~~~en~~~~~~la~ 313 (354)
.+++.|+++-.++..
T Consensus 270 l~~I~~nv~l~k~~c~ 285 (432)
T COG0422 270 LNEIEANVKLQKELCD 285 (432)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 788888887666544
No 78
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=55.21 E-value=3.5 Score=39.82 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=18.9
Q ss_pred cccccCCCCcc-CCCCcccccccc
Q 018530 327 GQCCANPRSQK-CRTGCRIRGCIG 349 (354)
Q Consensus 327 ~~c~~~~~~~~-c~~gi~i~~~~~ 349 (354)
..|..|+.|.+ ||.+|+||.+|+
T Consensus 351 s~CieCgqCl~~CPq~l~Ip~~Lk 374 (391)
T COG1453 351 SDCIECGQCLEKCPQHLDIPELLK 374 (391)
T ss_pred cccchhhhhhhcCCCcCcHHHHHH
Confidence 36777777965 999999999875
No 79
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.68 E-value=84 Score=28.85 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCC------CChHHHHHHHHHHHHc-CCccEEeccCC---CHHHHHHHHH
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQ-GLVKAVGVSNY---SEKRLRNAYE 210 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~------~~~~~~~~aL~~l~~~-Gkir~iGvSn~---~~~~l~~~~~ 210 (354)
.++.+... .+-+.|.++|+++|++-+...... ......++.++.+++. +..+...++.+ +...++.+.+
T Consensus 18 ~~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 35555444 455558999999999986532110 1122346666666443 34676666522 3455555443
Q ss_pred HHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEc
Q 018530 211 KLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (354)
Q Consensus 211 ~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (354)
.+ ++.+.+.++.-+... -.+.+++++++|+.+...
T Consensus 97 ----~g--~~~iri~~~~s~~~~-~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 ----LG--VDVVRVATHCTEADV-SEQHIGAARKLGMDVVGF 131 (263)
T ss_pred ----cC--CCEEEEEechhhHHH-HHHHHHHHHHCCCeEEEE
Confidence 23 344443333222111 125888999999877654
No 80
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=54.63 E-value=4.5 Score=38.99 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=19.2
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|++| .-||++|+|++++.
T Consensus 308 ~CvgCGrC~~~CP~~I~i~~~i~ 330 (344)
T PRK15055 308 MCVGCGRCDDRCPEYISFSNCIN 330 (344)
T ss_pred hCcCcCccccccCCCCCHHHHHH
Confidence 59999999 66999999998874
No 81
>PRK05588 histidinol-phosphatase; Provisional
Probab=54.36 E-value=1.7e+02 Score=26.58 Aligned_cols=84 Identities=7% Similarity=0.161 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCC---chHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~---~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
...+.+++|.+.|+..+ .+++.-.....+.. .-+..+ +.+++.. ..+|++.--++ +.++ ....++
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~~~ 84 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEENK 84 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHHHH
Confidence 46678999999999998 77663211000000 012222 2222321 13444444443 2222 345667
Q ss_pred HHHHhhCCCccceEEEccCC
Q 018530 153 DSLFRLGLSSVELYQLHWAG 172 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~ 172 (354)
+.|++...||+ +.-+|+.+
T Consensus 85 ~~l~~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 85 ELINKYEFDYV-IGSIHLVD 103 (255)
T ss_pred HHHhhCCCCeE-EEeEEeeC
Confidence 78888888887 78889754
No 82
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.25 E-value=1.6e+02 Score=26.84 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=16.9
Q ss_pred hHHHHHHHcCcEEEEcccCCCC
Q 018530 237 GVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~~G 258 (354)
..+++|+..|...+...|...|
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~ 115 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAG 115 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCC
Confidence 4778999999998887775444
No 83
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.09 E-value=2.1e+02 Score=27.66 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=83.1
Q ss_pred HHHHHHHHhccCC--CCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEEccCCC------------CC
Q 018530 111 TLLGRFIKERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI------------WG 175 (354)
Q Consensus 111 ~~lG~al~~~~~~--~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg-~dyiDl~~lH~p~~------------~~ 175 (354)
..+-++++..... .+...+.|+| .|. .+.+++-.+.-+++|| .+....+-||.+++ ++
T Consensus 165 ~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~ 237 (345)
T PRK14457 165 DEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP 237 (345)
T ss_pred HHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC
Confidence 3445666654311 0123677777 331 2223333333334443 34457788998875 23
Q ss_pred hHHHHHHHHH-HHHcCC---ccEEecc--CCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCc----chh---hHHHHH
Q 018530 176 NEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EEN---GVKAAC 242 (354)
Q Consensus 176 ~~~~~~aL~~-l~~~Gk---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~----~~~---~l~~~~ 242 (354)
.+++++++.+ +.+.|+ |+++=+. |.+.+.++++.+.++.. +..++-++||++.... ... .+.+..
T Consensus 238 l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l--~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L 315 (345)
T PRK14457 238 IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGF--QSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVL 315 (345)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcC--CCeEEEecCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 6777877766 455563 5666665 45678888888877543 4578889999864322 111 355677
Q ss_pred HHcCcEEEEcccCCCC
Q 018530 243 DELGITLIAYCPIAQD 258 (354)
Q Consensus 243 ~~~gi~v~a~spl~~G 258 (354)
+++|+.+......|.-
T Consensus 316 ~~~Gi~vtvR~~~G~d 331 (345)
T PRK14457 316 EQRGVAVSVRASRGLD 331 (345)
T ss_pred HHCCCeEEEeCCCCCc
Confidence 7889999888777653
No 84
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=54.09 E-value=63 Score=32.04 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEEccCCCCC-----hHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg-~dyiDl~~lH~p~~~~-----~~~~~~aL 183 (354)
|+.|-++|++...+.+.+=|+|.|-... ..-.+.+..-+++.-++.- ...+.++.+|.|+... .+.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~---eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLT---ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc---cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 7888888877654332345777776643 2222333333333323310 0136788999888632 23333333
Q ss_pred HH-H--------HHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 184 ~~-l--------~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
.+ + ++.++|--||-++.++..++++.+..+..|+++.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 32 1 23456888876666677777777777777776533
No 85
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.75 E-value=1.5e+02 Score=29.79 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHhhCCCccceE---EEccCCCCChHHHHHHHHHHHHc-CCcc---------EEeccCCCHHHHHHHH
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQ-GLVK---------AVGVSNYSEKRLRNAY 209 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~---~lH~p~~~~~~~~~~aL~~l~~~-Gkir---------~iGvSn~~~~~l~~~~ 209 (354)
+.+... .+-..|.++|++.|++. -++.--.+-.++-|+.+..+++. ..++ .+|.+++..+.+++..
T Consensus 24 ~t~dkl-~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 24 TTEEML-PILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 344333 34556888899999984 01100001223457777777765 2233 2577777666666666
Q ss_pred HHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEE
Q 018530 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (354)
Q Consensus 210 ~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 251 (354)
+.+...|+. ++.+-.++-+...-. ..+++++++|+.+.+
T Consensus 103 ~~A~~~Gvd--~irif~~lnd~~n~~-~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 103 QKSVENGID--IIRIFDALNDVRNLE-TAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHCCCC--EEEEEEecCcHHHHH-HHHHHHHHcCCeEEE
Confidence 666666654 333333332221122 488999999987654
No 86
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=53.48 E-value=5.3 Score=38.98 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=18.6
Q ss_pred cccccCCCC-ccCCC------Cccccccc
Q 018530 327 GQCCANPRS-QKCRT------GCRIRGCI 348 (354)
Q Consensus 327 ~~c~~~~~~-~~c~~------gi~i~~~~ 348 (354)
+.|..|+.| ..||. +|+||+.+
T Consensus 67 ~~C~~Cg~C~~~CP~apPhef~i~ip~~l 95 (389)
T PRK15033 67 NLCHNCGACLHACQYAPPHEFAVNVPKAM 95 (389)
T ss_pred HhCcCcccccccCcCCCCcccCCCHHHHH
Confidence 468888889 67999 99999876
No 87
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=52.88 E-value=1.6e+02 Score=25.80 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
|++.+.++++.+++.|+...|. | +..+..++++.+....+++++++-=. ...+.++..+.
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~vG~~w~~~~i~va~e~------~as~~~~~~l~ 68 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDI---I-----------EEGLAPGMDIVGDKYEEGEIFVPELL------MAADAMKAGLD 68 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHccCCeeHHHHH------HHHHHHHHHHH
Confidence 5588999999999999775553 2 33444444443321112333333211 22233444444
Q ss_pred HHHHhhCCCcc---ceEEEccCC-CCChHHHHHHHHHHHHcCC-ccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 153 DSLFRLGLSSV---ELYQLHWAG-IWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 153 ~SL~rLg~dyi---Dl~~lH~p~-~~~~~~~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
.....+..... --+++-.+. +.-.-+..-.-.-|+..|. |.++| .+.+++.+.++... ..|+++-+.++
T Consensus 69 ~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~-----~~~d~v~lS~~ 142 (201)
T cd02070 69 LLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKE-----HKPDILGLSAL 142 (201)
T ss_pred HHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHH-----cCCCEEEEecc
Confidence 43333332111 112222221 1111122222334556664 56666 45555555555433 35666666665
Q ss_pred cccCCcchhhHHHHHHHcCc
Q 018530 228 LIYRKPEENGVKAACDELGI 247 (354)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi 247 (354)
....-..-.++++.+++.+.
T Consensus 143 ~~~~~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 143 MTTTMGGMKEVIEALKEAGL 162 (201)
T ss_pred ccccHHHHHHHHHHHHHCCC
Confidence 44433322357777777753
No 88
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.69 E-value=1.7e+02 Score=28.41 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=61.4
Q ss_pred EccCCC------------CChHHHHHHHHHHH-HcCC---ccEEeccCC--CHHHHHHHHHHHHhcCCCeeeeccccCcc
Q 018530 168 LHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (354)
Q Consensus 168 lH~p~~------------~~~~~~~~aL~~l~-~~Gk---ir~iGvSn~--~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~ 229 (354)
||.+++ ++.+++++++.++. +.|+ |+++=+..+ +.+.++++.+.++.. +..++-++||++
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPyn~~ 303 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILFNPH 303 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCCC
Confidence 898875 23467888887554 5554 577666644 678888888877643 568889999987
Q ss_pred cCC----cchh---hHHHHHHHcCcEEEEcccCCCCC
Q 018530 230 YRK----PEEN---GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 230 ~~~----~~~~---~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
... +..+ .+.+..+++|+.+....+.+.-+
T Consensus 304 ~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 304 EGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 532 1111 24556778899999888777543
No 89
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=52.63 E-value=75 Score=28.38 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=50.4
Q ss_pred HhhCCCccceEEEc-cCCCCChHHHHHHHHHHHHcCC-ccEEecc-CCCHHHHHHHHHHHHhcCCCeeeeccccCcccCC
Q 018530 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (354)
Q Consensus 156 ~rLg~dyiDl~~lH-~p~~~~~~~~~~aL~~l~~~Gk-ir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~ 232 (354)
..+|.||+=+.+.- .|...+.+ ...++.+.-. ++.+||. |.+.+.+.++.+. ..++++|++-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~----~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPE----QAREIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHH----HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 45899998877665 44444333 3333444433 8899987 5577888888765 47999998864
Q ss_pred cchhhHHHHHHHcC-cEEE
Q 018530 233 PEENGVKAACDELG-ITLI 250 (354)
Q Consensus 233 ~~~~~l~~~~~~~g-i~v~ 250 (354)
+..+.++..++.. +.|+
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 2223566666554 4443
No 90
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=52.21 E-value=38 Score=30.82 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=49.4
Q ss_pred CCCcccCceeecccc---cCCCCCCCCCCcchhhHHHHHHHHHH----HHHCCCCeeeccc--c-cCCCCCCCCCchHHH
Q 018530 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDT----SLDNGITFFDTAE--V-YGSRASFGAINSETL 112 (354)
Q Consensus 43 ~tg~~vs~lglG~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~----A~~~Gin~fDTA~--~-Yg~g~~~~~~~sE~~ 112 (354)
.||+.+|.++|.+.+ ||+. ++..++++.++++. |.+.|||.|--|- + |.... |+.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d-------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD-------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC-------HHH
Confidence 579999999998864 3432 44555666655554 5578999998884 3 33322 555
Q ss_pred HHHHHHhccCC---CCCceEEEEeccC
Q 018530 113 LGRFIKERKQR---DPEVEVTVATKFA 136 (354)
Q Consensus 113 lG~al~~~~~~---~~R~~v~I~TK~~ 136 (354)
..+++...... ..|.+|.++--+.
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeeec
Confidence 55555443211 1366788887773
No 91
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=51.74 E-value=2.5e+02 Score=27.77 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcCCccEEeccC---C-CHHHHHHHHHHHHhcC
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSN---Y-SEKRLRNAYEKLKKRG 216 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~Gkir~iGvSn---~-~~~~l~~~~~~~~~~~ 216 (354)
.+.+.+.+.+.+.+.-...+ .+-+.+-...+ .-...+.+.++.+++.|.--+|+.+| + +++.++++.+.
T Consensus 54 ~t~~evl~ev~~d~~~~~~~-~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~----- 127 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTGR-DTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN----- 127 (404)
T ss_pred CCHHHHHHHHHHHHHHhcCC-CCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-----
Confidence 57777888888777655322 45555555433 33567888888888888777777444 3 55666666543
Q ss_pred CCeeeeccccCcccCCcc---------hh--hHHHHHHHcCcEEEEcccCCCCCCCchhh--hhhhhhcccchhhhhhhc
Q 018530 217 IPLASNQVNYSLIYRKPE---------EN--GVKAACDELGITLIAYCPIAQDSPIFAAR--LKTSCSHWKVYTTESTNW 283 (354)
Q Consensus 217 ~~~~~~Q~~~n~~~~~~~---------~~--~l~~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~~~~~~~~~~~~~~~ 283 (354)
.++.+++..+-.++... +. +.+....+ ++.+++-.|+..|.-.+... .-..+..+....-..++|
T Consensus 128 -gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y 205 (404)
T TIGR03278 128 -GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred -CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 23444454444432111 10 23444445 57788888888886543221 111122222211122333
Q ss_pred c--cCC----CceeeeCCCCHhHHHHHHHHHHHHHHHhC
Q 018530 284 A--SRP----DLHCRVSKKSPTTVEQNQGTRRELQQNFH 316 (354)
Q Consensus 284 ~--~~~----~v~~~~~~~~~~~~~en~~~~~~la~~~~ 316 (354)
. ..+ +.....++.++..-++-.+.++++.++++
T Consensus 206 ~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~ 244 (404)
T TIGR03278 206 ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFP 244 (404)
T ss_pred ccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 2 111 22223334445555555666677777766
No 92
>PRK10376 putative oxidoreductase; Provisional
Probab=51.17 E-value=7.9 Score=36.23 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCcchhhhcccc
Q 018530 305 QGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 305 ~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
.+.+.++++++++|++|+||+|..
T Consensus 223 ~~~l~~ia~~~~~t~aq~al~w~l 246 (290)
T PRK10376 223 SSTLSDVAASLGATPMQVALAWLL 246 (290)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHH
Confidence 467888999999999999999966
No 93
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=51.03 E-value=1.1e+02 Score=28.33 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 018530 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (354)
Q Consensus 76 ~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL 155 (354)
+...+.+.+.++|..|+=|+.-|+.+.+ ....-+++-+.+++... ..+ +--|... .-.+.+....-++.--
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 4778889999999999999999875332 00112334444443321 122 3334321 2368899999999999
Q ss_pred HhhCCCccc
Q 018530 156 FRLGLSSVE 164 (354)
Q Consensus 156 ~rLg~dyiD 164 (354)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999999887
No 94
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=50.92 E-value=1.3e+02 Score=30.85 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHH-HhccCCCCCceEE---EEeccCCCCCCCCHHHHHH
Q 018530 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFI-KERKQRDPEVEVT---VATKFAALPWRLGRQSVLA 149 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~al-~~~~~~~~R~~v~---I~TK~~~~~~~~~~~~i~~ 149 (354)
++-.+-+..|++.|-. ..|-+. .|+ -..+-+++ +..+... .-|= ..-|+.....+.+.+.+++
T Consensus 232 eeEveK~~~A~~~GADtvMDLST-Ggd---------i~~~R~~Il~~spvPv--GTVPiYqA~~~~~~~~~~lt~e~~~d 299 (607)
T PRK09284 232 EEEVEKMVWATRWGADTVMDLST-GKN---------IHETREWILRNSPVPI--GTVPIYQALEKVNGVAEDLTWEIFRD 299 (607)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC-CCC---------HHHHHHHHHHcCCCCc--cCccHHHHHHHhcCChhhCCHHHHHH
Confidence 3444557888888875 555542 233 34444444 3332211 1000 0111111124578888888
Q ss_pred HHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcc
Q 018530 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~ 229 (354)
.|++..+ +-||.+-+|.- -..+.++.++ + |..|+-+-.-..+....-.- -.=|++
T Consensus 300 ~ieeQAe----qGVDf~TIHaG------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h-----------~kENpl 354 (607)
T PRK09284 300 TLIEQAE----QGVDYFTIHAG------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH-----------HKENFL 354 (607)
T ss_pred HHHHHHH----hCCCEEEEChh------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHc-----------CCcCcH
Confidence 8888877 45899999953 2344455554 3 77888777766666553321 112445
Q ss_pred cCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCCCceeeeCCCC--H-hHHHHHHH
Q 018530 230 YRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS--P-TTVEQNQG 306 (354)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~en~~ 306 (354)
+...+ ++++.|++.+|.+--=--|--|-+..... ......+.. ...+.+-+...+|-+.+-|.- | .++++|++
T Consensus 355 Ye~FD--~ileI~k~YDVtlSLGDGLRPG~iaDA~D-~AQ~~EL~t-LGELt~rA~e~gVQVMIEGPGHVPl~~I~~N~~ 430 (607)
T PRK09284 355 YTHFE--EICEIMAAYDVSFSLGDGLRPGSIADAND-EAQFAELET-LGELTKIAWEHDVQVMIEGPGHVPMHLIKENMD 430 (607)
T ss_pred HHHHH--HHHHHHHHhCeeeeccCCcCCCccccCCc-HHHHHHHHH-HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHH
Confidence 54333 59999999999985333333333322100 000000000 011122223457778877766 3 88999998
Q ss_pred HHHHHHH
Q 018530 307 TRRELQQ 313 (354)
Q Consensus 307 ~~~~la~ 313 (354)
+-.++..
T Consensus 431 lqk~lc~ 437 (607)
T PRK09284 431 KQLEHCH 437 (607)
T ss_pred HHHHhhC
Confidence 8666544
No 95
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=50.87 E-value=7.8 Score=35.78 Aligned_cols=23 Identities=4% Similarity=0.018 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCcchhhhcccc
Q 018530 306 GTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 306 ~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
..++++++++++|++|+||+|..
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l 212 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAM 212 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 45888999999999999999855
No 96
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=50.73 E-value=2.1e+02 Score=26.66 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHCC-CCeeecccccCC
Q 018530 71 DRKMKAAKAAFDTSLDNG-ITFFDTAEVYGS 100 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~G-in~fDTA~~Yg~ 100 (354)
..|.+...+.++..++.| ++-+=..-..|.
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE 47 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGE 47 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccc
Confidence 467788899999999999 887655544443
No 97
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=50.69 E-value=10 Score=25.95 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=23.1
Q ss_pred cCccccccccceeecCCCCcccCceeecccc
Q 018530 27 EGFATVKTAEDKVKLGGSDLKVTKLGVGAWS 57 (354)
Q Consensus 27 ~~~~~~~~~m~~r~lg~tg~~vs~lglG~~~ 57 (354)
.|.+.+.+....+.|+.||+.||.+-+|++-
T Consensus 6 qPLaqalPfs~~~~l~dtglrvpv~KmGtgw 36 (61)
T PF15221_consen 6 QPLAQALPFSLGRALRDTGLRVPVIKMGTGW 36 (61)
T ss_pred CchhhhCCccccccccccccCCceeeecchH
Confidence 3444445555678899999999999988863
No 98
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=50.22 E-value=94 Score=30.09 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCccceEEEccCCCC----ChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeee
Q 018530 147 VLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (354)
Q Consensus 147 i~~~le~SL~rLg~dyiDl~~lH~p~~~----~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (354)
-+..+-+.|.++|+++|++-..-.|... +.+++++.+. +...++..++. .+...++.+.+. +.+...+
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~----g~~~v~i 140 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAA----GAKEVAV 140 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHc----CcCEEEE
Confidence 4556777799999999998655454322 2344555553 33335555554 478888888764 3322111
Q ss_pred ccccCcc------cCCcch-----hhHHHHHHHcCcEEEEc
Q 018530 223 QVNYSLI------YRKPEE-----NGVKAACDELGITLIAY 252 (354)
Q Consensus 223 Q~~~n~~------~~~~~~-----~~l~~~~~~~gi~v~a~ 252 (354)
-+..|.. ....++ .+++++++++|+.+.++
T Consensus 141 ~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 141 FASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 1111111 111121 15888999999988533
No 99
>PRK07534 methionine synthase I; Validated
Probab=50.16 E-value=2.4e+02 Score=27.09 Aligned_cols=229 Identities=11% Similarity=-0.031 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC---CC-CCchHHHHHHHHH---hccCCCCCceEEEEeccCCCCC------
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS---FG-AINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~---~~-~~~sE~~lG~al~---~~~~~~~R~~v~I~TK~~~~~~------ 140 (354)
++...++=+..+++|-+.+=|.....+... .+ ....+++.-.+++ +...+ .+.+++|+.=+|+...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~-~~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADK-AGRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh-cCCccEEEEecCCCccccCCCC
Confidence 466777777888999999987654333100 00 0011223322222 11100 0236888888887421
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCC------HHHHHHHHHHHHh
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKK 214 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~------~~~l~~~~~~~~~ 214 (354)
..+.+.+.......++.|--..+|++++--. ....|+..+++.+++.++=-.+.++-.+ -..++++.+.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 2456677777777777774456999999754 2356666666667767765555555322 1344555555443
Q ss_pred cCCCeeeeccccCcccCCcchhhHHHHHHHc-CcEEEEcccCCCCC-CCchhhhhhhhhcccchhhhhhhcccCCCceee
Q 018530 215 RGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYCPIAQDS-PIFAARLKTSCSHWKVYTTESTNWASRPDLHCR 292 (354)
Q Consensus 215 ~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~-gi~v~a~spl~~G~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 292 (354)
.+..++++-+++..- +......++...... ++.+++|---+.-. ..+.......... ....+.+|.. .++..+
T Consensus 201 ~~~~~~avGvNC~~g-p~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~~~~~~~~~~p~~---~~~~~~~~~~-~Ga~iI 275 (336)
T PRK07534 201 LGEPPLAFGANCGVG-ASDLLRTVLGFTAQGPERPIIAKGNAGIPKYVDGHIHYDGTPEL---MAEYAVLARD-AGARII 275 (336)
T ss_pred cCCCceEEEecCCCC-HHHHHHHHHHHHHhcCCCeEEEEcCCCCcccCCCccccCCCHHH---HHHHHHHHHH-cCCcEE
Confidence 334567777777641 100001234443333 45666664322201 1110001111111 1223346643 455444
Q ss_pred --eCCCCHhHHHHHHHHHHH
Q 018530 293 --VSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 293 --~~~~~~~~~~en~~~~~~ 310 (354)
-.+++|+|+++.-+.++.
T Consensus 276 GGCCGTtP~hI~~la~~l~~ 295 (336)
T PRK07534 276 GGCCGTMPEHLAAMRAALDA 295 (336)
T ss_pred eeecCCCHHHHHHHHHHHcc
Confidence 237789999988777653
No 100
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=50.03 E-value=1.9e+02 Score=25.80 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecc-cccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTA-EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA-~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
.+.++..++++...+.||..|+.. +..+.. ..+.+.+..+..+ . ..+.+.. ....+.++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~ 72 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED-------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERA 72 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH-------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH-------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHH
Confidence 345788889999899999999999 333221 1444555554443 2 2333333 2356667776
Q ss_pred HHHHHHhhCCCccceEEEccCCC------CC----hHHHHHHHHHHHHcCCccEEec---cCCCHHHHHHHHHHHHhcCC
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~------~~----~~~~~~aL~~l~~~Gkir~iGv---Sn~~~~~l~~~~~~~~~~~~ 217 (354)
++.. +..|.|.+.++.-=++.. .. .+.+.+..+.+++.|.-..+++ +.++++.+.++.+.+...+.
T Consensus 73 ~~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 73 VEAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred HHhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 7643 567888887765332210 11 3456667777788998888887 44577777777776665543
Q ss_pred Ceeeeccc--cCcccCCcchhhHHHHHHH----cCcEEEEcccCCCC
Q 018530 218 PLASNQVN--YSLIYRKPEENGVKAACDE----LGITLIAYCPIAQD 258 (354)
Q Consensus 218 ~~~~~Q~~--~n~~~~~~~~~~l~~~~~~----~gi~v~a~spl~~G 258 (354)
+.+.+. +..+.+.... +++...++ ..+++....-++.+
T Consensus 152 --~~i~l~Dt~G~~~P~~v~-~lv~~~~~~~~~~~l~~H~Hnd~Gla 195 (237)
T PF00682_consen 152 --DIIYLADTVGIMTPEDVA-ELVRALREALPDIPLGFHAHNDLGLA 195 (237)
T ss_dssp --SEEEEEETTS-S-HHHHH-HHHHHHHHHSTTSEEEEEEBBTTS-H
T ss_pred --eEEEeeCccCCcCHHHHH-HHHHHHHHhccCCeEEEEecCCccch
Confidence 333332 2233332222 45665554 23666666666543
No 101
>PRK07328 histidinol-phosphatase; Provisional
Probab=49.15 E-value=2.1e+02 Score=26.20 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCCeeecccccCCC------CCCCCCchHHHHHHHHHhc---cCCCCCceEEEEeccCCCCCCCCHHHH
Q 018530 77 AKAAFDTSLDNGITFFDTAEVYGSR------ASFGAINSETLLGRFIKER---KQRDPEVEVTVATKFAALPWRLGRQSV 147 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDTA~~Yg~g------~~~~~~~sE~~lG~al~~~---~~~~~R~~v~I~TK~~~~~~~~~~~~i 147 (354)
..+++++|.+.|+..+=.+++.-.. ...+..-....+-..+++. ..+..+=+|++---++. -+ ..
T Consensus 20 ~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~-----~~-~~ 93 (269)
T PRK07328 20 PEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADY-----HP-GT 93 (269)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEecc-----cC-Cc
Confidence 5678999999999977666553210 0000000011222333222 11111123444444432 12 13
Q ss_pred HHHHHHHHHhhCCCccceEEEccCCCC--------------ChHHH----HHHHHHHHHcCCccEEe
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAGIW--------------GNEGF----IDGLGDAVEQGLVKAVG 196 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~~~--------------~~~~~----~~aL~~l~~~Gkir~iG 196 (354)
...+++.|++-..||+ +.-+|+.+.+ +.+++ ++.+.++++.|.+.-+|
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlg 159 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIG 159 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEee
Confidence 3455566777677777 7778985421 11222 23566777778776665
No 102
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.92 E-value=87 Score=31.13 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhc---CCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEccc
Q 018530 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (354)
Q Consensus 181 ~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~---~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (354)
+....+-+.|-+..+|..+.+++++++.++..+.. +-||-+|-+ .++-++.. +.++++.+.++||.++..+-
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEecc
Confidence 44445667899999999999999999988888763 346766654 33333222 23689999999998876654
No 103
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=48.32 E-value=2.1e+02 Score=26.21 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHH
Q 018530 134 KFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (354)
Q Consensus 134 K~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~ 213 (354)
|+|...+.+..+.-....=+..+++|.|+|++..-..... +....+++..+.++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~e~l~~~~~~G~~~VEl~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~ 62 (279)
T TIGR00542 4 PLGIYEKALPKGECWLERLQLAKTCGFDFVEMSVDETDDR---------------------LSRLDWSREQRLALVNAII 62 (279)
T ss_pred ccceehhhCCCCCCHHHHHHHHHHcCCCEEEEecCCccch---------------------hhccCCCHHHHHHHHHHHH
Q ss_pred hcCCCeeeecc----ccCcccCCcc--------hhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhh
Q 018530 214 KRGIPLASNQV----NYSLIYRKPE--------ENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTEST 281 (354)
Q Consensus 214 ~~~~~~~~~Q~----~~n~~~~~~~--------~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~ 281 (354)
..|+.+..+.. .+++..+++. -...+++|++.|..++.+. +............
T Consensus 63 ~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~~~~~~~~~~------------- 127 (279)
T TIGR00542 63 ETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLA--GYDVYYEEHDEET------------- 127 (279)
T ss_pred HcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEec--CcccccCcCCHHH-------------
Q ss_pred hcccCCCceeeeCCCCHhHHHHHHHHHHHHHHHhCCCcc
Q 018530 282 NWASRPDLHCRVSKKSPTTVEQNQGTRRELQQNFHTGRP 320 (354)
Q Consensus 282 ~~~~~~~v~~~~~~~~~~~~~en~~~~~~la~~~~~s~~ 320 (354)
.+.+.++++.+-++++++|+...
T Consensus 128 ----------------~~~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 128 ----------------RRRFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred ----------------HHHHHHHHHHHHHHHHHcCCEEE
No 104
>PLN02363 phosphoribosylanthranilate isomerase
Probab=48.24 E-value=54 Score=30.29 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEcc-CCCCChHHHHHHHHHHHHcCCccEEecc-CCCHHHHHHHHHHHHhcCCCe
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~~~~~~~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~ 219 (354)
.+.+.++... ++|.|||=+.+... |...+.+ ..+.+.+......++.+||. |-+++.+.++.+. ..+
T Consensus 55 t~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-----~~l 123 (256)
T PLN02363 55 TSARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADS-----SDL 123 (256)
T ss_pred CcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-----cCC
Confidence 4555555444 48999999875432 3223333 33334333333246779985 7788888877664 478
Q ss_pred eeecccc
Q 018530 220 ASNQVNY 226 (354)
Q Consensus 220 ~~~Q~~~ 226 (354)
+++|++-
T Consensus 124 d~VQLHG 130 (256)
T PLN02363 124 ELVQLHG 130 (256)
T ss_pred CEEEECC
Confidence 9999975
No 105
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=48.03 E-value=2.2e+02 Score=28.41 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCCCC-ceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC------hHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~------~~~~~~a 182 (354)
|+.|-++|++...+.+. +=|+|.|-... ..-.+.+..-+++.-++++ +.++.+|.|+... ...+.++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 88888888876655433 55777776632 2223334444444334444 6899999887622 1222333
Q ss_pred -HHHHH--------HcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 183 -L~~l~--------~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
++.+. +.++|--||-.++ +..++++.+..+..|+++.
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 221 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVV 221 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEE
Confidence 23343 2467888886554 3344555555666676553
No 106
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.65 E-value=47 Score=26.07 Aligned_cols=73 Identities=25% Similarity=0.162 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCC-CC------------
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LP------------ 139 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~-~~------------ 139 (354)
|....+...--.+++|.-|+-|-..|.-|+ |..+---|-+.+ +++++++|+.. .+
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv 85 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGV 85 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceee
Confidence 445556666667899999999999998764 666655555544 68899999742 11
Q ss_pred ---CCCCHHHHHHHHHHHHHh
Q 018530 140 ---WRLGRQSVLAALKDSLFR 157 (354)
Q Consensus 140 ---~~~~~~~i~~~le~SL~r 157 (354)
.+-.-..+++++|.-|..
T Consensus 86 ~f~d~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 86 QFTDGENGLKVRNQIETLLGG 106 (117)
T ss_pred eccCCCchhhHHHHHHHHHHh
Confidence 112234688888877743
No 107
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=47.46 E-value=2.4e+02 Score=26.24 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
..+.++..++++.+.+.|+..+.- .| |+..-...-.+++. .+++.+ -.++.|+|-.. . + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~-~l~~~g----~~~v~i~TNG~-----l----l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIR-RIKDYG----IKDVSMTTNGI-----L----L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHH-HHHhCC----CceEEEEcCch-----H----H-HH
Confidence 456788888999999999987763 23 32200001122222 223322 13677777542 1 1 12
Q ss_pred HHHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCC----ccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gk----ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
.-..|.+.|++.|- +-++.+++ ...+.+++.++.+++.|. |..+.+.+.+.+.+.++.+.+...++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 33446666766543 22344332 135778888999988874 23444455677788888877776665
Q ss_pred C
Q 018530 218 P 218 (354)
Q Consensus 218 ~ 218 (354)
.
T Consensus 179 ~ 179 (302)
T TIGR02668 179 I 179 (302)
T ss_pred E
Confidence 4
No 108
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=46.77 E-value=1.5e+02 Score=28.71 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=60.4
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHH-cCC---ccEEeccCC--CHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~-~Gk---ir~iGvSn~--~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
+-||.+++ .+.+++++++.++.+ .|+ |+++=+.++ +.+.++++.+.++. .+..++-++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 56898874 235788888877654 442 455555444 56888888877754 34677778999
Q ss_pred cccCCcc----hh---hHHHHHHHcCcEEEEcccCCCCC
Q 018530 228 LIYRKPE----EN---GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 228 ~~~~~~~----~~---~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
++..... .. .+.++.+++|+.+......+.-+
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 8653221 11 35567778899999988877533
No 109
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=46.63 E-value=71 Score=27.49 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCc----cceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHH
Q 018530 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (354)
Q Consensus 147 i~~~le~SL~rLg~dy----iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 211 (354)
.+..++..++++|.+. ++.++-.+.......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3456666677777651 1111111111122457888999999988 56666888887777766543
No 110
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.22 E-value=3e+02 Score=26.98 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=64.4
Q ss_pred eEEEccCCC------------CChHHHHHHHHHHH-HcCC---ccEEecc--CCCHHHHHHHHHHHHhcC-CCeeeeccc
Q 018530 165 LYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVS--NYSEKRLRNAYEKLKKRG-IPLASNQVN 225 (354)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~aL~~l~-~~Gk---ir~iGvS--n~~~~~l~~~~~~~~~~~-~~~~~~Q~~ 225 (354)
.+-||.+++ ++.+++++++.+.. +.|+ |.++=+. |-+.+.++++.+.++... .+..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 367898875 24688999988776 4464 5666666 456677777777765431 146889999
Q ss_pred cCcccCCcch-------hhHHHHHHHcCcEEEEcccCCCC
Q 018530 226 YSLIYRKPEE-------NGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 226 ~n~~~~~~~~-------~~l~~~~~~~gi~v~a~spl~~G 258 (354)
||++.....+ ..+.+..+++||.+......+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9986432211 14677788999999998887753
No 111
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=45.93 E-value=87 Score=32.39 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCccEEeccC--CCHHHHHHHHHHHHhcCCCeeeecccc--------CcccCCcchhhHHHHHHHcCc
Q 018530 178 GFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY--------SLIYRKPEENGVKAACDELGI 247 (354)
Q Consensus 178 ~~~~aL~~l~~~Gkir~iGvSn--~~~~~l~~~~~~~~~~~~~~~~~Q~~~--------n~~~~~~~~~~l~~~~~~~gi 247 (354)
.+++.|++---+-++--.|++. |+..+..+..+. +-+-..|..| .+.+-+-...++++.+.+.|+
T Consensus 251 ~i~dyleE~~l~d~vE~~GlccTA~D~tRy~~~aKv-----vGpls~ql~~IrsG~aDViVvDEqCir~Dileea~k~g~ 325 (772)
T COG1152 251 YIMDYLEENGLEDEVELAGLCCTAIDMTRYDEAAKV-----VGPLSKQLKVIRSGKADVIVVDEQCIREDILEEASKLGI 325 (772)
T ss_pred HHHHHHHhccchhhhheeeeeeeccccchhhhhhhh-----hchhhhhhhhhhcCCceEEEecccccchhHHHHHhccCC
Confidence 4555555333333444556553 444444444332 1233333332 233444444579999999999
Q ss_pred EEEEcccCC
Q 018530 248 TLIAYCPIA 256 (354)
Q Consensus 248 ~v~a~spl~ 256 (354)
.+++-.-..
T Consensus 326 ~vIat~~k~ 334 (772)
T COG1152 326 PVIATNEKG 334 (772)
T ss_pred ceEechhHH
Confidence 999876543
No 112
>PRK00208 thiG thiazole synthase; Reviewed
Probab=45.72 E-value=2.5e+02 Score=25.89 Aligned_cols=105 Identities=10% Similarity=-0.109 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
..++.+...+..+-..+-++++.|-|=.+..+.. .+..+++++.++|.++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678888888888888888999888877776654 46889999999999999864 44677777777666553
Q ss_pred CeeeeccccCcccCC--cchhhHHHHHHH-cCcEEEE
Q 018530 218 PLASNQVNYSLIYRK--PEENGVKAACDE-LGITLIA 251 (354)
Q Consensus 218 ~~~~~Q~~~n~~~~~--~~~~~l~~~~~~-~gi~v~a 251 (354)
.+++++.-=+++-.. ....++++...+ .++.|++
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIv 180 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIV 180 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 345553311222211 101235666655 4777765
No 113
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=45.52 E-value=2.8e+02 Score=28.34 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC-----hHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-----~~~~~~aL~ 184 (354)
|+.|-++|++...+.+.+-|+|.|-+ ..+-+-..++...+.++.+.++++.++.|.... .+.+++++.
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 78888888876543322335555544 344455555666666665568899999887622 222333222
Q ss_pred H-H----------HHcCCccEEeccCC---CHHHHHHHHHHHHhcCCCeee
Q 018530 185 D-A----------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 185 ~-l----------~~~Gkir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~ 221 (354)
+ + .+.++|--||.++. .+..+.++.+..+..|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 2 1 12356888898763 455566666666666765543
No 114
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=45.14 E-value=70 Score=30.34 Aligned_cols=165 Identities=15% Similarity=0.246 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHCCCC-eeecccccCCCCCCCCCchHHHHHHHHH---hccCCCCCceEEEEeccCCCCCCCCHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~~~~~~sE~~lG~al~---~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~ 150 (354)
+...++.+.|.+.|+. .||.=+.+-. +.++--+.+ .... .+..+.++--.. -..+++.+...
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~--~~~~vg~tlQaY---L~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNK--GWPNVGITLQAY---LKRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGT--T--SEEEEEETT---BTTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhC--CCCeEEEEEech---hhchHHHHHHH
Confidence 4567888999999988 6776555444 444444443 1221 134566655553 13466777777
Q ss_pred HHHHHHhhCCCccceEEEc---------------cCCC--CC----hHHHHHHHHHHHHcCC-c--cEEeccCCCHHHHH
Q 018530 151 LKDSLFRLGLSSVELYQLH---------------WAGI--WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLR 206 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH---------------~p~~--~~----~~~~~~aL~~l~~~Gk-i--r~iGvSn~~~~~l~ 206 (354)
++.+-++ |. .+-+=++- ++++ ++ .+.....+..+..++. - -+++|.+||...+.
T Consensus 158 ~~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~ 235 (313)
T PF01619_consen 158 LELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIA 235 (313)
T ss_dssp HHHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHH
T ss_pred HHHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHH
Confidence 7666542 22 12222221 1211 11 3345666666666555 3 58999999999999
Q ss_pred HHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 207 ~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
.+.+.++..++++.--+++|-.+.-=.+ ++.....+.|..|.-|.|+|.
T Consensus 236 ~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 236 LALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecCC
Confidence 9999998887765334555554443222 477778889999999999983
No 115
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.70 E-value=57 Score=29.04 Aligned_cols=65 Identities=25% Similarity=0.252 Sum_probs=41.2
Q ss_pred HHhhCCCccceEEEc-cCCCCChHHHHHHHHHHHHcCCccEEecc-CCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 155 L~rLg~dyiDl~~lH-~p~~~~~~~~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
+..+|.||+=+.+.. .|...+.+ ..+.+.... .+.++.+||. |-+++.+.++.+. ..++++|++-
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 345899999886433 22223333 333333322 3568899987 5688888887664 4789999975
No 116
>PRK05414 urocanate hydratase; Provisional
Probab=44.53 E-value=50 Score=33.48 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=67.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHH----------HHHHHHHHHhhCCCccceEEEccCCCCChHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV----------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i----------~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~ 179 (354)
|.++..+-+..+.. -+.++||++-+|.-.. --|..+ +-.-.+.-+||.+.|+|.+- .+.+++
T Consensus 151 eT~~~a~rk~f~g~-L~G~~~lTaGLGGMgG-AQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldea 222 (556)
T PRK05414 151 ETFAEAARQHFGGD-LAGRLVLTAGLGGMGG-AQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEA 222 (556)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEecCCcccc-ccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHH
Confidence 44444444433322 2678999998874210 001100 11123445788899999643 357899
Q ss_pred HHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee--eeccccC
Q 018530 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (354)
Q Consensus 180 ~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~--~~Q~~~n 227 (354)
++..++.+++|+..+||+-..-.+.++++.+. ++.|+ .-|...|
T Consensus 223 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~----~i~pDlvtDQTSaH 268 (556)
T PRK05414 223 LALAEEAKAAGEPLSIGLLGNAADVLPELVRR----GIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHHcCCceEEEEeccHHHHHHHHHHc----CCCCCccCcCcccc
Confidence 99999999999999999998888888887653 55544 4566543
No 117
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=44.50 E-value=48 Score=33.46 Aligned_cols=106 Identities=10% Similarity=0.015 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHH----------HHHHHHHHHhhCCCccceEEEccCCCCChHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV----------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i----------~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~ 179 (354)
|.++..+-+..+.. -+.++||++-+|.-... -|..+ +-.-.+.-+||.+.|+|.+. .+.+++
T Consensus 142 eT~~~aark~f~~~-L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldea 213 (545)
T TIGR01228 142 ETFAELARQHFGGS-LKGKWVLTAGLGGMGGA-QPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEA 213 (545)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEeCCCccccc-cHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHH
Confidence 55544444444332 26789999988742100 01110 01123344788899999643 357899
Q ss_pred HHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee--eeccccC
Q 018530 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA--SNQVNYS 227 (354)
Q Consensus 180 ~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~--~~Q~~~n 227 (354)
++..++.+++|+..+||+-..-.+.++++.+. ++.|+ .-|...|
T Consensus 214 l~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSaH 259 (545)
T TIGR01228 214 LARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCccc
Confidence 99999999999999999998888888887653 45544 4566543
No 118
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=44.47 E-value=1.1e+02 Score=30.71 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=59.3
Q ss_pred cccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEEccCCCC
Q 018530 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIW 174 (354)
Q Consensus 96 ~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg-~dyiDl~~lH~p~~~ 174 (354)
-.||. |+.|-++|++...+.+-+=|+|.|-.-. ..-.+.+..-+++.-++.. ...+.++.++.|+..
T Consensus 72 ~VfGg---------~~~L~~aI~~~~~~~~P~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 72 TILGG---------DENVEEAILNICKKAKPKIIGLCTTGLT---ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFK 139 (455)
T ss_pred eEeCC---------HHHHHHHHHHHHHhhCCCEEEEeCcchH---hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCC
Confidence 46776 8888888887654321244666655421 1122222222222222211 113678889988763
Q ss_pred C-----hHHHHHHHHH-HH--------HcCCccEEeccCCCHHHHHHHHHHHHhcCCCe
Q 018530 175 G-----NEGFIDGLGD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (354)
Q Consensus 175 ~-----~~~~~~aL~~-l~--------~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (354)
. .+.++++|.+ +. +.++|--||-+++.+..++++.+..+..|+++
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v 198 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEP 198 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCce
Confidence 2 2333333332 21 34568888766665656666666666667665
No 119
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=44.25 E-value=2.8e+02 Score=26.22 Aligned_cols=153 Identities=11% Similarity=-0.014 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
++..+.++...+.|++.|=.-- +. .. +..+=+++++.. .++.|.-=.. ..++.+..+ . -+.
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~-----~~~~l~vDaN---~~~~~~~a~-~-~~~ 194 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF-----PQIPLVIDAN---ESYDLQDFP-R-LKE 194 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC-----CCCcEEEECC---CCCCHHHHH-H-HHH
Confidence 5566677778889999874321 11 11 222223444432 1222222221 234555432 1 233
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCc
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~ 233 (354)
|+. .++.++-.|-. .+-++.+.++++.-.+. +.|=|.++...+.++++. --.+++|+...-.-.=.
T Consensus 195 l~~-----~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGit 261 (324)
T TIGR01928 195 LDR-----YQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGLT 261 (324)
T ss_pred Hhh-----CCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCHH
Confidence 443 35556665532 34467788888876664 677788888888887653 13677787765432111
Q ss_pred chhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 234 EENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
....+...|+++|+.++..+.+.+|+
T Consensus 262 ~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 262 EVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHHHHHcCCeEEEcceEcccH
Confidence 12258999999999999776665554
No 120
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=44.19 E-value=9.4 Score=36.95 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=33.7
Q ss_pred cCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcc-cCCcchhhHHHHHHHcCcE
Q 018530 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI-YRKPEENGVKAACDELGIT 248 (354)
Q Consensus 189 ~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~-~~~~~~~~l~~~~~~~gi~ 248 (354)
-|+||++||--++.+.+.++...-+ .-+..+.+..++ ++.. ..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~D--P~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHD--PAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCC--HHHHHHHHHcCCc
Confidence 3999999999999999998865421 123333333333 2221 1467777777664
No 121
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=44.07 E-value=3.4e+02 Score=27.10 Aligned_cols=109 Identities=22% Similarity=0.121 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
..+.+.+++.++..++ |+.++|++|.+.-...+ .|.+.+++|++..-.-..-..+..+.+.+.+...|+
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT-------~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy--- 294 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGT-------PLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW--- 294 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCC-------HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC---
Confidence 4577888888876654 89999999887632211 122345556543100000011233333444443343
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCC
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPI 261 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~ 261 (354)
.|.+.+-+.+...+..+-...-..+..++++.+=+.|.+.
T Consensus 295 -~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~ 334 (449)
T PRK09058 295 -RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIG 334 (449)
T ss_pred -eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccC
Confidence 3444443333221112334444557778888887777654
No 122
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=43.99 E-value=2.2e+02 Score=25.43 Aligned_cols=74 Identities=16% Similarity=0.322 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
++...+.+.+.++|..|+=|+.-|+.+.+ +..-+ +.|++.-. .+-.|.++--+ .+.+.+.+-++.-
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf~~~ga-----t~~dv-~~m~~~v~--~~v~IKaaGGi------rt~~~a~~~i~aG 197 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGFGAGGA-----TVEDV-RLMRNTVG--DTIGVKASGGV------RTAEDAIAMIEAG 197 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCC-----CHHHH-HHHHHHhc--cCCeEEEeCCC------CCHHHHHHHHHHh
Confidence 56678899999999999999988874322 12222 22222220 02233333222 4788899999999
Q ss_pred HHhhCCCc
Q 018530 155 LFRLGLSS 162 (354)
Q Consensus 155 L~rLg~dy 162 (354)
-.|+|++.
T Consensus 198 a~riGts~ 205 (211)
T TIGR00126 198 ASRIGASA 205 (211)
T ss_pred hHHhCcch
Confidence 99999875
No 123
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=43.82 E-value=3e+02 Score=26.37 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCC---CCceEEEEeccCCCCCCCCHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~---~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
.+.++...+++.+.+.|++=+=-+ |. |..+-+-|.+.-... .-.++-++|-.- +.
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~~~~islTTNG~----------~L 100 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLGIRDLSLTTNGV----------LL 100 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcccceEEEecchh----------hH
Confidence 467999999999999999866422 33 555544443321110 025677776652 34
Q ss_pred HHHHHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCC----ccEEeccCCCHHHHHHHHHHHHhc
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKR 215 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gk----ir~iGvSn~~~~~l~~~~~~~~~~ 215 (354)
.....-|+.-|++.|-+ -||..++ .....+++.++++.++|. |-.+=+-+.+..+|..+++.+...
T Consensus 101 ~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~ 179 (322)
T COG2896 101 ARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKER 179 (322)
T ss_pred HHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhc
Confidence 55666777778776653 3444443 125788999999999985 456667778888888888888776
Q ss_pred CCCee
Q 018530 216 GIPLA 220 (354)
Q Consensus 216 ~~~~~ 220 (354)
+..+.
T Consensus 180 ~~~lr 184 (322)
T COG2896 180 GAQLR 184 (322)
T ss_pred CCceE
Confidence 65433
No 124
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=43.69 E-value=1.3e+02 Score=26.78 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=55.1
Q ss_pred cceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHH
Q 018530 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (354)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~ 241 (354)
.++.++-.|-+. +-++.+.+|.+...+. +.+=|.++...+.++++. -..+++|+..+..-.-.+...+..+
T Consensus 120 ~~i~~iEeP~~~---~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAP---DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCc---cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 456666655332 2366777788877665 445555677776655443 1467788776654221111258899
Q ss_pred HHHcCcEEEEcccCCCC
Q 018530 242 CDELGITLIAYCPIAQD 258 (354)
Q Consensus 242 ~~~~gi~v~a~spl~~G 258 (354)
|+++|+.++..+.+..+
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999987766554
No 125
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.58 E-value=72 Score=28.38 Aligned_cols=77 Identities=27% Similarity=0.344 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeec
Q 018530 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 144 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
...+.+.+++.++.+|.+. +++ .+...+.....+.++.+.++| +..|=++..++..+...++.+...|+|+..+-
T Consensus 13 ~~~~~~g~~~~a~~~g~~~-~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEV-EIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEE-EEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCEE-EEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 4568888999999999633 332 222245678889999999888 88888887777666666666666777655543
Q ss_pred cc
Q 018530 224 VN 225 (354)
Q Consensus 224 ~~ 225 (354)
..
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 33
No 126
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=43.25 E-value=1.8e+02 Score=26.00 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeeec
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDT 94 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDT 94 (354)
.|++.+.++++.|++.|+.-.|+
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 35688999999999999776554
No 127
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=42.93 E-value=2.2e+02 Score=27.54 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=64.3
Q ss_pred CccceEE-EccCCC------------CChHHHHHHHHHHHH-cCC---ccEEecc--CCCHHHHHHHHHHHHhc---CCC
Q 018530 161 SSVELYQ-LHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVS--NYSEKRLRNAYEKLKKR---GIP 218 (354)
Q Consensus 161 dyiDl~~-lH~p~~------------~~~~~~~~aL~~l~~-~Gk---ir~iGvS--n~~~~~l~~~~~~~~~~---~~~ 218 (354)
.++||.+ ||.+++ .+.+++++++.+..+ .|. |+++=+- |.+.+.++++.+.++.. +..
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 4588854 787754 235667776666655 443 4555554 55677899888887654 124
Q ss_pred eeeeccccCcccCC------cch---hhHHHHHHHcCcEEEEcccCCCCC
Q 018530 219 LASNQVNYSLIYRK------PEE---NGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 219 ~~~~Q~~~n~~~~~------~~~---~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
..++-++||++... +.. ..+.++.+++|+.+......|.-+
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di 332 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSDI 332 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 57888999986432 111 146677888999999888777533
No 128
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.91 E-value=2.6e+02 Score=25.65 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHc--------CC-ccEEe
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--------GL-VKAVG 196 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~--------Gk-ir~iG 196 (354)
|.+-+=.|+..........+.++.-++.|++.|.. =| -...+|++|++. -| |+.+|
T Consensus 25 rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~--S~-------------Fl~~~lEqLq~~l~~~~~piek~~vclg 89 (281)
T KOG3131|consen 25 RGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQ--SD-------------FLLVALEQLQQQLEGIRKPIEKIIVCLG 89 (281)
T ss_pred cCCCccccccccCcccccHHHHHHHHHHHHHHHHH--HH-------------HHHHHHHHHhHHHhhhccchhheEEEEe
Confidence 44444466665444456788899999999999853 12 123334444332 24 48899
Q ss_pred ccCCCH-----HHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 197 VSNYSE-----KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 197 vSn~~~-----~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
+.++.. -|+.-+++..+...+.. ++-.-|.|..+. +=.+|.+..|--|+.-.+.+.-
T Consensus 90 lG~f~~~~~a~~Qlal~iei~r~fk~~~-~~~s~fDPvf~k----~E~eyLeslG~cvLs~~e~~~~ 151 (281)
T KOG3131|consen 90 LGPFSRTYHALHQLALVIEIHRHFKIRD-VEASYFDPVFRK----SEKEYLESLGGCVLSKDEAGKH 151 (281)
T ss_pred eccccccccHHHHHHHHHHHHHHhcccc-ceeeeeCcchhh----hHHHHHHhcCCeEeccCccccc
Confidence 988743 45555555554433332 222233444443 2478888999888877776654
No 129
>PRK07329 hypothetical protein; Provisional
Probab=42.72 E-value=2.6e+02 Score=25.33 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHHhCCCc
Q 018530 298 PTTVEQNQGTRRELQQNFHTGR 319 (354)
Q Consensus 298 ~~~~~en~~~~~~la~~~~~s~ 319 (354)
++++-.+++...++.++.|.+.
T Consensus 221 ~~~vg~~~~~a~~~l~~~g~~~ 242 (246)
T PRK07329 221 LEHYRYNFDDAQKLLKEHGIKE 242 (246)
T ss_pred HHHHHHHHHHHHHHHHHcCCce
Confidence 6788777777777888877654
No 130
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=42.66 E-value=8.4 Score=37.44 Aligned_cols=21 Identities=10% Similarity=0.373 Sum_probs=18.1
Q ss_pred ccccCCCC-ccCCC------Cccccccc
Q 018530 328 QCCANPRS-QKCRT------GCRIRGCI 348 (354)
Q Consensus 328 ~c~~~~~~-~~c~~------gi~i~~~~ 348 (354)
.|.+|+.| ..||. ++++|+++
T Consensus 49 lChnC~~C~~~CPy~pPHef~v~~p~lm 76 (372)
T TIGR02484 49 LCHDCQSCWHDCQYAPPHAFAINLPATL 76 (372)
T ss_pred HCcCcccccccCcCCCCccccCCHHHHH
Confidence 78888889 67999 88999875
No 131
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=42.40 E-value=8.4 Score=32.10 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.3
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| .-||+||++.+++.
T Consensus 47 ~C~~Cg~C~~~CP~~i~~~~~i~ 69 (144)
T TIGR03290 47 MCTTCYTCQERCPRDVKITDIIK 69 (144)
T ss_pred cCcCcCchhhhcCCCCCHHHHHH
Confidence 68888889 56999999987764
No 132
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.38 E-value=3.9e+02 Score=27.29 Aligned_cols=140 Identities=10% Similarity=0.114 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC-CCccceEEEccCCCCC--h---HHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG--N---EGFIDGL 183 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg-~dyiDl~~lH~p~~~~--~---~~~~~aL 183 (354)
|+.+-+.|++.....+-+=|+|.|-+. ++-+-..++...+.++ ..-++++.+|.|.... . +.+++++
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 666667776654332123455555543 2223333333333332 1136899999987622 1 2223332
Q ss_pred HHH---------------HHcCCccEEeccCC---CHHHHHHHHHHHHhcCCCeeeecc--------------ccCcccC
Q 018530 184 GDA---------------VEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYR 231 (354)
Q Consensus 184 ~~l---------------~~~Gkir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~--------------~~n~~~~ 231 (354)
.+. ...++|--||.++. ++..+.++.+..+..|+++.++-. .+|+...
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~ 222 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPY 222 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEec
Confidence 221 12356888987742 344555555556666665432221 2343321
Q ss_pred CcchhhHHHHHH-HcCcEEEEcccCC
Q 018530 232 KPEENGVKAACD-ELGITLIAYCPIA 256 (354)
Q Consensus 232 ~~~~~~l~~~~~-~~gi~v~a~spl~ 256 (354)
......+-++.+ +.|+.++...|++
T Consensus 223 ~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 223 REVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred hhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111112444444 5699988777876
No 133
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.12 E-value=3e+02 Score=25.95 Aligned_cols=52 Identities=8% Similarity=0.152 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
++.+|.++.+.++..+++..+.+.+++.- .+-..+++.|+.++...||+.+.
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~la~e~g~~v~~ldpl~~~~ 288 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRPA-------VIESVAKGTSVRMGTLDPLGTNI 288 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCChH-------HHHHHHHhcCCeEEEeccccccc
Confidence 56777777777777777777666555431 24455667777777767777553
No 134
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=41.97 E-value=2.6e+02 Score=26.49 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=17.2
Q ss_pred hHHHHHHHcCcEEEEcccCC
Q 018530 237 GVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~ 256 (354)
.+++.|+++||.|.||-.++
T Consensus 74 ~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred HHHHHHHHcCCEEEEEEEee
Confidence 48999999999999997443
No 135
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.92 E-value=2.3e+02 Score=27.42 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=61.4
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHHcC--C--ccEEecc--CCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~~G--k--ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
+-||.+++ .+.+++++++.+..+.+ + ++++=+. |.+.+.++++.+.++.. +..++-++||
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnlIPyn 288 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNLIPFN 288 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEEEecC
Confidence 55887765 23567888887776654 2 3455454 55678999988887644 4567779999
Q ss_pred cccCC----cchh---hHHHHHHHcCcEEEEcccCCCCC
Q 018530 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 228 ~~~~~----~~~~---~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
+.... +... .+....+++||.+....+.+...
T Consensus 289 ~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 327 (349)
T PRK14463 289 EHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDI 327 (349)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcch
Confidence 86431 1111 35667789999999998887543
No 136
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=41.72 E-value=3.5e+02 Score=26.54 Aligned_cols=112 Identities=23% Similarity=0.217 Sum_probs=60.7
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCC
Q 018530 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (354)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~ 172 (354)
+..-.||. |+.|-++|++...+.+.+=++|.|-... ..-.+.+..-+++.-++++ +.++.+|.|.
T Consensus 63 E~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~g 127 (410)
T cd01968 63 EKDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCVV---ALIGDDIDAVCKTASEKFG---IPVIPVHSPG 127 (410)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 44456777 8888888887665432345667776643 2222333333333333333 5788888877
Q ss_pred CCC-----hHHHHHHHHHHHH---------cCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 173 IWG-----NEGFIDGLGDAVE---------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 173 ~~~-----~~~~~~aL~~l~~---------~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
... .+.++++|.+... ++.|--||-.++ +..+.++.+..+..|+++.
T Consensus 128 f~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~ 188 (410)
T cd01968 128 FVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-AGELWGVKPLLEKLGIRVL 188 (410)
T ss_pred cccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-cccHHHHHHHHHHcCCeEE
Confidence 521 3344555444431 466777885444 2334444455555566544
No 137
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=41.69 E-value=1.3e+02 Score=27.03 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
+.++..++.+.+.+.|..|+=|+..|+.|.. +.+.+....+..+. |-.|..+--+ .+.+...+-++
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~ga-----t~~~v~~m~~~~~~---~~~IKasGGI------rt~~~a~~~i~ 199 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGA-----TVEDVKLMRETVGP---RVGVKASGGI------RTLEDALAMIE 199 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC-----CHHHHHHHHHHhCC---CceEEeeCCc------CCHHHHHHHHH
Confidence 3456677777778888888888777753222 25554443333321 2222222222 45666666666
Q ss_pred HHHHhhCCC
Q 018530 153 DSLFRLGLS 161 (354)
Q Consensus 153 ~SL~rLg~d 161 (354)
.--.|+||+
T Consensus 200 aGA~riGtS 208 (221)
T PRK00507 200 AGATRLGTS 208 (221)
T ss_pred cCcceEccC
Confidence 555555554
No 138
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=41.52 E-value=1.3e+02 Score=29.91 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCC-ccEEeccCCCHHHHHHHHHHHHhcCCCee-eecc
Q 018530 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLA-SNQV 224 (354)
Q Consensus 147 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~-~~Q~ 224 (354)
+.+++-..-.. +++. -++++|.- ..-+.+..+.++++|. ++++.|.+-....++++.+..+.. .... +.-+
T Consensus 118 vl~~v~~~~~~-~~~k-~iitl~~e----H~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~V 190 (428)
T KOG1549|consen 118 VLKGVARFFGD-KTKK-HIITLQTE----HPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHV 190 (428)
T ss_pred HHHHhhccccc-cccc-eEEEeccc----CcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEec
Confidence 33444333333 3332 35555532 1235666667777885 577887765444455444443222 1222 1112
Q ss_pred ccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
...+.--.+.+ ++...|++.||.|..=..-+-|.
T Consensus 191 nn~~gv~~Pv~-EI~~icr~~~v~v~~DaAQavG~ 224 (428)
T KOG1549|consen 191 NNEIGVLQPVK-EIVKICREEGVQVHVDAAQAVGK 224 (428)
T ss_pred ccCccccccHH-HHHHHhCcCCcEEEeehhhhcCC
Confidence 22222222332 48888888888776554444443
No 139
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.50 E-value=2.7e+02 Score=26.99 Aligned_cols=170 Identities=19% Similarity=0.151 Sum_probs=92.8
Q ss_pred hhHHHHHHHH---HHHHH-C--CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCC----CCCceEEEEeccCCCCCC
Q 018530 72 RKMKAAKAAF---DTSLD-N--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR----DPEVEVTVATKFAALPWR 141 (354)
Q Consensus 72 ~~~~~~~~~l---~~A~~-~--Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~----~~R~~v~I~TK~~~~~~~ 141 (354)
.+.++..+.+ +..++ . |.+.++---.-|.|+. ..+ -..+-++++..... ..-..+.|+|=.
T Consensus 130 lt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEP--Lln-~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G------ 200 (354)
T PRK14460 130 MTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEP--LLN-LDEVMRSLRTLNNEKGLNFSPRRITVSTCG------ 200 (354)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcc--cCC-HHHHHHHHHHHhhhhccCCCCCeEEEECCC------
Confidence 4456655555 33342 2 3332443333455532 111 33445666654311 011357777744
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCC------------CChHHHHHHHHHHHHc-CC---ccEEecc--CCCHH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEK 203 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~------------~~~~~~~~aL~~l~~~-Gk---ir~iGvS--n~~~~ 203 (354)
. .+ .++ -|...+...|++ -||.+++ ++.+++++++.+.... |+ |+++=+- |.+.+
T Consensus 201 ~-~~----~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~e 273 (354)
T PRK14460 201 I-EK----GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLE 273 (354)
T ss_pred C-hH----HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHH
Confidence 1 22 233 355555544554 5777665 2467788888765443 32 3444333 55677
Q ss_pred HHHHHHHHHHhcCCCeeeeccccCcccCCc----chh---hHHHHHHHcCcEEEEcccCCCCC
Q 018530 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EEN---GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~----~~~---~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
.++++.+.++.. +..++-++||+..... ... .+.++.+++|+.+......+.-+
T Consensus 274 d~~~l~~~l~~~--~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di 334 (354)
T PRK14460 274 HARELVRLLSRT--KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDI 334 (354)
T ss_pred HHHHHHHHHhcC--CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 888888877643 4577888999864321 111 35667788899999888877543
No 140
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=41.50 E-value=2.8e+02 Score=26.92 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=60.9
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHHcCCccEEec-------cCCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGV-------SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~~Gkir~iGv-------Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
+-||.|+. ++.++++++.+...+... +.|-+ -|-+.++.+++.+..+ +++-.++-++|
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP~ 292 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIPY 292 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEeec
Confidence 67898875 346788888887776554 43333 2555667777766653 34558999999
Q ss_pred CcccCCcch-------hhHHHHHHHcCcEEEEcccCCCCCC
Q 018530 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQDSP 260 (354)
Q Consensus 227 n~~~~~~~~-------~~l~~~~~~~gi~v~a~spl~~G~L 260 (354)
|+......+ ....+...++||.+....+-+..+.
T Consensus 293 Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DId 333 (349)
T COG0820 293 NPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDID 333 (349)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccccc
Confidence 998754422 1355666788899988877765443
No 141
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.11 E-value=2.9e+02 Score=25.43 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=23.5
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeecccccCC
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~ 100 (354)
...|.+...+.++..++.|++-+-..-..|.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE 46 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGE 46 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 3567788999999999999997765544443
No 142
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.84 E-value=3.4e+02 Score=26.07 Aligned_cols=133 Identities=16% Similarity=0.164 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccC----------------CCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccC
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYG----------------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFA 136 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg----------------~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~ 136 (354)
+.+.-.++.+++-+.|+.|+=|...-. .+.. ..-.+| +.+.+. ...|+|+|-.
T Consensus 75 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~----~n~~LL-~~va~~-----gkPvilstG~- 143 (327)
T TIGR03586 75 PWEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEI----TDLPLI-RYVAKT-----GKPIIMSTGI- 143 (327)
T ss_pred CHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccc----cCHHHH-HHHHhc-----CCcEEEECCC-
Confidence 446667788888999999887653211 1100 001122 112222 2345555544
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC---hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHH
Q 018530 137 ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (354)
Q Consensus 137 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~---~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~ 213 (354)
.+.+.+..+++-..+ -|. -|+.++|.....+ ..--+.++..|++.=. .-||+|.|+......+...+
T Consensus 144 -----~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva- 213 (327)
T TIGR03586 144 -----ATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA- 213 (327)
T ss_pred -----CCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH-
Confidence 367788888877653 342 3799999854422 2223455555555433 35999999876544444333
Q ss_pred hcCCCeeeeccccCcc
Q 018530 214 KRGIPLASNQVNYSLI 229 (354)
Q Consensus 214 ~~~~~~~~~Q~~~n~~ 229 (354)
.|. .++.-++++-
T Consensus 214 -~GA--~iIEkH~tld 226 (327)
T TIGR03586 214 -LGA--CVIEKHFTLD 226 (327)
T ss_pred -cCC--CEEEeCCChh
Confidence 232 3666666553
No 143
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=40.66 E-value=70 Score=29.85 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=60.3
Q ss_pred HHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccC---CCHHHHHHHHHHHHhcCCCeeeeccccCccc
Q 018530 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (354)
Q Consensus 154 SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~ 230 (354)
++++...+..|+..+..|.-.. ..++.+ ++..- .+|=|+. +....++++++..+..++++.++-+.||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-CpVi~s---l~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-CPVIAS---LKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-ChHHHh---hccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 4444444447888887764321 112222 22222 3444543 2335667777878888999999999997765
Q ss_pred CCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
. ++.++|++.|+.+++--|+..
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 4 389999999999998777764
No 144
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=40.64 E-value=3.4e+02 Score=26.06 Aligned_cols=135 Identities=16% Similarity=0.079 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccC----------------CCCCCCCCchHHHHHHHHHhccCCCCCceEEEEecc
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYG----------------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg----------------~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~ 135 (354)
.+.+....+.+++-+.|+.||=|...-. .+.. ..-.+| +.+.+. ...|+|+|-.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~----~n~pLL-~~~A~~-----gkPvilStGm 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEI----TNAPLL-KKIARF-----GKPVILSTGM 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccc----cCHHHH-HHHHhc-----CCcEEEECCC
Confidence 3457788899999999999987754211 1100 012222 122222 2456666655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC--C-hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHH
Q 018530 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 136 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~--~-~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~ 212 (354)
.+.+.+..+++...+. |.+--|+.+||..... + ..--+.++..|++.=. .-||+|.|+......+...+
T Consensus 143 ------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva 214 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA 214 (329)
T ss_pred ------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH
Confidence 3778888888877543 4321259999986531 1 2223444555554332 45999999876544444333
Q ss_pred HhcCCCeeeeccccCc
Q 018530 213 KKRGIPLASNQVNYSL 228 (354)
Q Consensus 213 ~~~~~~~~~~Q~~~n~ 228 (354)
.| -.++.-++.+
T Consensus 215 --lG--A~iIEkH~tl 226 (329)
T TIGR03569 215 --LG--ATVIEKHFTL 226 (329)
T ss_pred --cC--CCEEEeCCCh
Confidence 22 2356666555
No 145
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=40.61 E-value=2.9e+02 Score=25.35 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=57.4
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCC-------CCCHHHHHHHH
Q 018530 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (354)
Q Consensus 79 ~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~-------~~~~~~i~~~l 151 (354)
+++++|++.|...+..-..- +. ...+-..+++++ -.+++...-+.+.. ..-.+.+...+
T Consensus 87 ~v~e~al~~G~~iINdisg~-~~--------~~~~~~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 152 (257)
T cd00739 87 EVARAALEAGADIINDVSGG-SD--------DPAMLEVAAEYG-----APLVLMHMRGTPKTMQENPYYEDVVDEVLSFL 152 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCC-CC--------ChHHHHHHHHcC-----CCEEEECCCCCCcccccCCCcccHHHHHHHHH
Confidence 46777888887777633211 10 133456677664 45666554332110 00123344444
Q ss_pred HHH---HHhhCCC----ccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCC
Q 018530 152 KDS---LFRLGLS----SVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (354)
Q Consensus 152 e~S---L~rLg~d----yiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~ 201 (354)
++. +++.|++ ++|-.. .+.. ....++++.+..+++.|.=-.+|+||-+
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii~DPg~--gf~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 153 EARLEAAESAGVARNRIILDPGI--GFGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEecCC--CcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 443 4455776 444421 0100 1134678888888888877789999875
No 146
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=40.46 E-value=3.4e+02 Score=26.10 Aligned_cols=146 Identities=12% Similarity=0.010 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
++..+.++.+.+.|++.|=.=- . |. + +++++.- -.++.|.--.. ..++.+...+-++ .
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv------~------~~-v-~avre~~----G~~~~l~vDaN---~~w~~~~A~~~~~-~ 185 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL------P------KL-F-EAVREKF----GFEFHLLHDVH---HRLTPNQAARFGK-D 185 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH------H------HH-H-HHHHhcc----CCCceEEEECC---CCCCHHHHHHHHH-H
Confidence 4555666777788988764210 0 22 2 3333322 13444444332 2355554332222 2
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCc
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~ 233 (354)
|+. +++.++-.|-+ .+-++.+.+|++...+. +.|=|-+++..+..+++. --++++|+...-.--=.
T Consensus 186 l~~-----~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit 252 (361)
T cd03322 186 VEP-----YRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGIT 252 (361)
T ss_pred hhh-----cCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHH
Confidence 332 46666666533 23477888888887765 777788888888888664 14788888776532111
Q ss_pred chhhHHHHHHHcCcEEEEcccC
Q 018530 234 EENGVKAACDELGITLIAYCPI 255 (354)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a~spl 255 (354)
+...+.++|+++|+.++..+..
T Consensus 253 ~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 253 PARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHHHHcCCeeeccCCC
Confidence 2225899999999999876443
No 147
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=40.43 E-value=1.4e+02 Score=25.44 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=59.6
Q ss_pred EEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcc----hhhHHHH
Q 018530 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE----ENGVKAA 241 (354)
Q Consensus 166 ~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~----~~~l~~~ 241 (354)
+|+..|.....+++++...+=-++.-|++|=|.+-+-....++++..+.. ..++-+.|+....... +.++.+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~---lkvVvVthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD---LKVVVVTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC---ceEEEEEeecccccCCceecCHHHHHH
Confidence 45666666667788887777777778999988877766666666654322 3444455555443332 2368889
Q ss_pred HHHcCcEEEEcccCCCC
Q 018530 242 CDELGITLIAYCPIAQD 258 (354)
Q Consensus 242 ~~~~gi~v~a~spl~~G 258 (354)
.+++|..|+.-|-.-+|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999998876654444
No 148
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=40.07 E-value=3.1e+02 Score=25.44 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHCCCCeeecccc---cCC-CCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEV---YGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~---Yg~-g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~ 149 (354)
.++..+..+.+.+.|+..||.--. +.. |.. -..+.+.+-+.++.... .-++-|.-|+.+. . +.+ .
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~--~~~~~~~~~eiv~~vr~---~~~~Pv~vKl~~~---~--~~~-~ 169 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMA--FGTDPEAVAEIVKAVKK---ATDVPVIVKLTPN---V--TDI-V 169 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccc--ccCCHHHHHHHHHHHHh---ccCCCEEEEeCCC---c--hhH-H
Confidence 366777888888889999987322 111 010 01136677777776642 1267788998642 1 122 2
Q ss_pred HHHHHHHhhCCCccceEE------EccCC--C--------C----ChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHHH
Q 018530 150 ALKDSLFRLGLSSVELYQ------LHWAG--I--------W----GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 208 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~------lH~p~--~--------~----~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~ 208 (354)
.+-+.+...|.|.|++.- +|... + . ...-.++.+.++++.=.|.-||+... +++.+.++
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333456778888776641 12100 0 0 01124667777777656888888886 67777777
Q ss_pred HHHHHhcCCCeeeeccccCccc----CCcchhhHHHHHHHcCc
Q 018530 209 YEKLKKRGIPLASNQVNYSLIY----RKPEENGVKAACDELGI 247 (354)
Q Consensus 209 ~~~~~~~~~~~~~~Q~~~n~~~----~~~~~~~l~~~~~~~gi 247 (354)
+.. | -+.+|+-=-++. ......++.++.+++|.
T Consensus 250 l~~----G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 250 LMA----G--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHc----C--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 642 2 355554332222 11111245566666663
No 149
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.99 E-value=3.1e+02 Score=26.86 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=57.0
Q ss_pred EEccCCC------------CChHHHHHHHHHHHHcC-------CccEEeccC--CCHHHHHHHHHHHHhcCCCeeeeccc
Q 018530 167 QLHWAGI------------WGNEGFIDGLGDAVEQG-------LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVN 225 (354)
Q Consensus 167 ~lH~p~~------------~~~~~~~~aL~~l~~~G-------kir~iGvSn--~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (354)
-||.+++ ++.+++++++.+..++- .|+++=+.. .+.+.++++.+.++.. +..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEec
Confidence 3898775 13456666665555432 256665664 4678888888877543 45888899
Q ss_pred cCcccCC----cchh---hHHHHHHHcCcEEEEcccCCC
Q 018530 226 YSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 226 ~n~~~~~----~~~~---~l~~~~~~~gi~v~a~spl~~ 257 (354)
||++... +... .+.+..+++|+.+......+.
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~ 337 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGD 337 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 9986521 2211 355677788999988666654
No 150
>PRK05985 cytosine deaminase; Provisional
Probab=39.93 E-value=3.6e+02 Score=26.11 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
..+...+..++..|++++-+--.+..+.. . .+-..+-++.++... |-++-+..-... ...........+++.
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~--~-~~~~~~~~~~~~~~~---~~~~~~v~~~~~--g~~~~~~~~~ll~~~ 169 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAG--L-RHLEAVLAARETLRG---LIDIQIVAFPQS--GVLSRPGTAELLDAA 169 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCcc--c-chHHHHHHHHHHhhC---cccEEEEeccCc--cccCCcCHHHHHHHH
Confidence 44667799999999998733211211110 0 012223333333321 223333332211 112221123445555
Q ss_pred HHhhCCCccceEEE---ccCCCCChHHHHHHHHHHHHcCCccEEeccCCC---HHHHHHHHHHHHhcCCCeeeeccccCc
Q 018530 155 LFRLGLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLASNQVNYSL 228 (354)
Q Consensus 155 L~rLg~dyiDl~~l---H~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~---~~~l~~~~~~~~~~~~~~~~~Q~~~n~ 228 (354)
|+. |. |+..- |.++....+.+-+.++.+.+.|+.-++=+.... ...+.++.+.....+..-.+.-.+...
T Consensus 170 l~~-g~---~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~ 245 (391)
T PRK05985 170 LRA-GA---DVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFC 245 (391)
T ss_pred HHc-CC---CEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhh
Confidence 553 32 33222 222222234444555666777876544443332 235555555544444321111122211
Q ss_pred cc-CCcch-hhHHHHHHHcCcEEEEcccCCCC
Q 018530 229 IY-RKPEE-NGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 229 ~~-~~~~~-~~l~~~~~~~gi~v~a~spl~~G 258 (354)
+. ....+ .++++.+++.|+.++.-.|+..|
T Consensus 246 l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~~ 277 (391)
T PRK05985 246 LGDLPEREVDRLAERLAEAGVAIMTNAPGSVP 277 (391)
T ss_pred hhcCCHHHHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 11 11111 24789999999998765455444
No 151
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=39.71 E-value=2.2e+02 Score=26.05 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHH-HHHHHHcCCccEEeccCC----CHHHHHHHHHHHHhcCCCeee
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDG-LGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~a-L~~l~~~Gkir~iGvSn~----~~~~l~~~~~~~~~~~~~~~~ 221 (354)
.+.+++.|+-.| +|||++=+-|-.. .-.++.++. ++-+++-|.--+.|=+-+ ....+++.++.++..| |++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 346777777888 6999999987544 222334444 444555666566662111 1244555555565544 555
Q ss_pred eccccCcccCCcchh-hHHHHHHHcCcEEEE
Q 018530 222 NQVNYSLIYRKPEEN-GVKAACDELGITLIA 251 (354)
Q Consensus 222 ~Q~~~n~~~~~~~~~-~l~~~~~~~gi~v~a 251 (354)
+.+.=..+.-..++. .+++.++++|+.+..
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 555544444333322 578888888887763
No 152
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=39.32 E-value=1.6e+02 Score=25.64 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred cceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHH
Q 018530 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (354)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l 205 (354)
+|.++||..++ .+..+.+.+......++.+|++++....+
T Consensus 74 ~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 68899998642 23344444333346789999998865444
No 153
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=39.24 E-value=54 Score=32.73 Aligned_cols=107 Identities=11% Similarity=-0.032 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHH-H--------HHHHHHHHHHhhCCCccceEEEccCCCCChHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ-S--------VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFI 180 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~-~--------i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~ 180 (354)
|.++..+-+...... +.+++|++-+|......... . ++-.-.+.-+||.+.|+|.. ..++++.+
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeAl 223 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEAL 223 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHHH
Confidence 555555444444332 67889988887421100000 0 01111223378889999852 13578999
Q ss_pred HHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeee--ccccC
Q 018530 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNYS 227 (354)
Q Consensus 181 ~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~--Q~~~n 227 (354)
...++..++|+-.+||+-..-.+.++++.+. ++.|+++ |...|
T Consensus 224 ~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~vtDQTsaH 268 (561)
T COG2987 224 ALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCceeccccccc
Confidence 9999999999999999999888888887654 5666654 55443
No 154
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.79 E-value=3e+02 Score=24.98 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhCCCccceEEEccCC-----CCChHHHHHHHHHHHHcCC-ccEEeccCC--------CH-------HHHH
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAG-----IWGNEGFIDGLGDAVEQGL-VKAVGVSNY--------SE-------KRLR 206 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~-----~~~~~~~~~aL~~l~~~Gk-ir~iGvSn~--------~~-------~~l~ 206 (354)
.+.++ ..+.+|.++|++..-.... .++..+.-+..+.+.+.|. |-.++++++ ++ +.++
T Consensus 19 ~e~~~-~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~ 97 (284)
T PRK13210 19 EERLV-FAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMK 97 (284)
T ss_pred HHHHH-HHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHH
Confidence 33443 4568999999996432111 1233344444555667774 445544432 22 4456
Q ss_pred HHHHHHHhcCCCeeeeccccCcc-cCCcc---------hhhHHHHHHHcCcEEEEcccCC
Q 018530 207 NAYEKLKKRGIPLASNQVNYSLI-YRKPE---------ENGVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 207 ~~~~~~~~~~~~~~~~Q~~~n~~-~~~~~---------~~~l~~~~~~~gi~v~a~spl~ 256 (354)
++++.+...|.+...+- .+... .+..+ -.++.++++++||.+. +-+..
T Consensus 98 ~~i~~a~~lG~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-lE~~~ 155 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLA-GYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-VEIMD 155 (284)
T ss_pred HHHHHHHHhCCCEEEEC-CcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-EEecC
Confidence 77777777776554331 11111 11111 0247788899998554 55554
No 155
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.76 E-value=1.2e+02 Score=27.30 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=26.1
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeecccccCCCC
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRA 102 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~ 102 (354)
++.+.++..++++.|.+.|++-+=..++|-.|.
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 345678999999999999999776666665654
No 156
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=38.63 E-value=1.5e+02 Score=24.64 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=43.8
Q ss_pred CCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEEccCCC-CChHHHHHHHHHHHHc
Q 018530 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (354)
Q Consensus 125 ~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~ 189 (354)
+|=-+.|+-|++. ...+..+++.+.++++.+. +...|++++..... .+..++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3778899999874 4677778888888877663 45789999998764 3455666666555544
No 157
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=38.10 E-value=2.9e+02 Score=24.74 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
....++++.|.+.|+..+=.+++...... .+. ..+.++. =+|+..--+. ...++.+..-++..
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~~~~~ 78 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGLVGKF 78 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHHHHhc
Confidence 45678999999999998877776432110 011 1111211 1222222221 13344443333332
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCC---CHHHHHHHHHHHHhcCCCeeeeccccCcccC
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~ 231 (354)
+ +.+|++.+| |.. +.+ ...+.+.+.|.-||--.. ....-+.+.+.+...++-+. +.++.+..
T Consensus 79 ~-----~~~d~v~v~-~~~---~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lE---In~s~~~~ 143 (237)
T PRK00912 79 R-----KKVDVLAVH-GGD---EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIE---FNLRDILK 143 (237)
T ss_pred c-----CcccEEEEe-CCC---HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEE---EEchHhhh
Confidence 2 246888899 211 222 235778888888776532 11122344444555554444 34443221
Q ss_pred Cc---------chhhHHHHHHHcCcEEEE
Q 018530 232 KP---------EENGVKAACDELGITLIA 251 (354)
Q Consensus 232 ~~---------~~~~l~~~~~~~gi~v~a 251 (354)
.. ....++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 002488999999987764
No 158
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=38.04 E-value=3e+02 Score=28.76 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCccceE---EEccCCCCChHHHHHHHHHHHHcC-Ccc---------EEeccCCCHHHHHHHHHHHHhcC
Q 018530 150 ALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQG-LVK---------AVGVSNYSEKRLRNAYEKLKKRG 216 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~---~lH~p~~~~~~~~~~aL~~l~~~G-kir---------~iGvSn~~~~~l~~~~~~~~~~~ 216 (354)
.+-..|.+.|++.|+++ .++-.-.+-.++.|+.|.++++.. .++ .+|.+++..+.++...+.+...|
T Consensus 30 ~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~G 109 (592)
T PRK09282 30 PIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENG 109 (592)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCC
Confidence 35556888899999885 111100022356788888888773 233 25666777777777777666666
Q ss_pred CCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEc
Q 018530 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (354)
Q Consensus 217 ~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (354)
+. ++.+-..+-+...-. ..+++++++|..+.+.
T Consensus 110 vd--~irif~~lnd~~n~~-~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 110 ID--IFRIFDALNDVRNME-VAIKAAKKAGAHVQGT 142 (592)
T ss_pred CC--EEEEEEecChHHHHH-HHHHHHHHcCCEEEEE
Confidence 53 333333332222111 4678889999877643
No 159
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=36.91 E-value=3.4e+02 Score=25.01 Aligned_cols=162 Identities=10% Similarity=-0.038 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeee
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 222 (354)
+.+.+.+...+.. .-|-|+||+=.--.+ ....+.+...++.+++.-.+ -|-+-+++++.++.+++... |. +-+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~~~~-~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~--G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAGTAV-EEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAK--GP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCc-hhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCC--CC-CEEE
Confidence 4455554444433 568999998542111 11233455555555544233 37888999999999987632 22 2333
Q ss_pred ccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhh-------hcccCCCceeeeCC
Q 018530 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTEST-------NWASRPDLHCRVSK 295 (354)
Q Consensus 223 Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~ 295 (354)
-+. ..... . ..+++.+++.|..++...--..|...........+ ......+. +....|++..+ +
T Consensus 97 sIs--~~~~~-~-~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l---~~~v~~a~~~GI~~~~IilDPgi~~~--~ 167 (261)
T PRK07535 97 SVS--AEGEK-L-EVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVA---KELVEKADEYGIPPEDIYIDPLVLPL--S 167 (261)
T ss_pred eCC--CCCcc-C-HHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHH---HHHHHHHHHcCCCHhHEEEeCCCCcc--c
Confidence 222 21111 1 25899999999999976533344321111100111 00011111 22334544432 3
Q ss_pred CCHhHHHHHHHHHHHHHHHh-CCCc
Q 018530 296 KSPTTVEQNQGTRRELQQNF-HTGR 319 (354)
Q Consensus 296 ~~~~~~~en~~~~~~la~~~-~~s~ 319 (354)
.+.++..+.++.++.+.+.+ |+..
T Consensus 168 ~~~~~~~~~l~~i~~l~~~~pg~p~ 192 (261)
T PRK07535 168 AAQDAGPEVLETIRRIKELYPKVHT 192 (261)
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCE
Confidence 44567777788888888776 6554
No 160
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=36.83 E-value=82 Score=31.96 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=53.6
Q ss_pred CceEEEEeccCCCCCCCCHHHH-------------HHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc
Q 018530 126 EVEVTVATKFAALPWRLGRQSV-------------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i-------------~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki 192 (354)
+.++||++-+|.- +..+- +-.-++.-+|+.+.|+|.+. .+.+++++..++.+++|+.
T Consensus 156 ~Gk~~lTaGLGGM----gGAQplA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------~~ldea~~~~~ea~~~~~~ 225 (546)
T PF01175_consen 156 AGKLFLTAGLGGM----GGAQPLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------DDLDEALARAKEARAKKEP 225 (546)
T ss_dssp TT-EEEEE--STT----CCHHHHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------SSHHHHHHHHHHHHHTT--
T ss_pred cceEEEEeccccc----ccchHHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------CCHHHHHHHHHHhhccCCe
Confidence 6789999998742 11110 11123445788889999753 3578999999999999999
Q ss_pred cEEeccCCCHHHHHHHHHHHHhcCCC--eeeeccccC
Q 018530 193 KAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYS 227 (354)
Q Consensus 193 r~iGvSn~~~~~l~~~~~~~~~~~~~--~~~~Q~~~n 227 (354)
.+||+-..-.+.++++.+. ++. +..-|...|
T Consensus 226 ~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 226 LSIGLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp EEEEEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred eEEEEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 9999998877788777553 444 455676654
No 161
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=36.82 E-value=3.6e+02 Score=25.32 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 73 ~~~~~~~~l~~A~~-~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
++++..+.+...++ .|++.+|--..|+.-.. ..+-..+-++|+...... ..+.|+--+...+..++++.+ .+
T Consensus 88 ~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~~--p~l~vs~Tlp~~p~gl~~~g~--~~ 160 (294)
T cd06543 88 SADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKEY--PDLKISFTLPVLPTGLTPDGL--NV 160 (294)
T ss_pred cHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHHC--CCcEEEEecCCCCCCCChhHH--HH
Confidence 44554555555554 49999998777754110 011356677787765432 345555444433334444332 23
Q ss_pred HHHHHhhC--CCccceEEEccCCC---CC-hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccc
Q 018530 152 KDSLFRLG--LSSVELYQLHWAGI---WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (354)
Q Consensus 152 e~SL~rLg--~dyiDl~~lH~p~~---~~-~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (354)
-++.+..| +|+|.++-+..-.. .+ -..+..+.+.++.+=+--+=+ ++..++-.. -++.|.+=++.
T Consensus 161 l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~------ig~TpMiG~nD 231 (294)
T cd06543 161 LEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM------IGVTPMIGVND 231 (294)
T ss_pred HHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH------ccccccccccC
Confidence 33444455 45666655543221 11 234555555555443222211 222222221 13344443333
Q ss_pred cC--cccCCcchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 226 YS--LIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 226 ~n--~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
.. ++..... ..+.++++++||+.+.|..+.+..
T Consensus 232 ~~~e~ft~~da-~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 232 VGSEVFTLADA-QTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred CCCceeeHHHH-HHHHHHHHhCCCCeEeeeeccCCC
Confidence 32 2222222 359999999999999999987654
No 162
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=36.68 E-value=1.5e+02 Score=28.45 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=80.6
Q ss_pred HHHHhhCCCccceEEEcc-CCC--CChHHHHHHHHHHHHcCCcc-EEeccCC---CHHHHHHHHHHHHhcCCCeeeeccc
Q 018530 153 DSLFRLGLSSVELYQLHW-AGI--WGNEGFIDGLGDAVEQGLVK-AVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~-p~~--~~~~~~~~aL~~l~~~Gkir-~iGvSn~---~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (354)
+.-+.+|.|+||+-+.-. |+. ...++....++...+.=.+- .|..|.. +++.|+++++.++.. ++-++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC
Confidence 344578999999865432 321 12334444444443332332 2666644 789999998876532 24333322
Q ss_pred cCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhcccCCCceeeeCCCCHhHHHHHH
Q 018530 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKSPTTVEQNQ 305 (354)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~en~ 305 (354)
. +.. +.+.+.|+++|..|++.+|.. +.--..+...+..++.+.. +....|.+.. .+...+...+++
T Consensus 161 ~-----en~-~~i~~lA~~y~~~Vva~s~~D---ln~ak~L~~~l~~~Gi~~e---dIviDP~~~~--lg~g~e~~~~~~ 226 (319)
T PRK04452 161 E-----DNY-KKIAAAAMAYGHAVIAWSPLD---INLAKQLNILLTELGVPRE---RIVMDPTTGA--LGYGIEYSYSVM 226 (319)
T ss_pred H-----HHH-HHHHHHHHHhCCeEEEEcHHH---HHHHHHHHHHHHHcCCCHH---HEEEeCCccc--ccCCHHHHHHHH
Confidence 1 112 259999999999999988665 1111112222222222221 1222343322 245567888888
Q ss_pred HHHHHHHHHhCCCc
Q 018530 306 GTRRELQQNFHTGR 319 (354)
Q Consensus 306 ~~~~~la~~~~~s~ 319 (354)
..++.++-+ |-..
T Consensus 227 e~IR~aAl~-~d~~ 239 (319)
T PRK04452 227 ERIRLAALK-GDEM 239 (319)
T ss_pred HHHHHHHhc-CCCc
Confidence 888877765 5443
No 163
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=36.12 E-value=4e+02 Score=25.58 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=13.0
Q ss_pred HHHHHHHHHHCCCCeeec
Q 018530 77 AKAAFDTSLDNGITFFDT 94 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDT 94 (354)
..+..+.|.++|+..+|-
T Consensus 139 f~~aA~~a~~aGfDgVei 156 (353)
T cd02930 139 FARCAALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 344455677899999887
No 164
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.80 E-value=4e+02 Score=25.53 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCeeecc
Q 018530 78 KAAFDTSLDNGITFFDTA 95 (354)
Q Consensus 78 ~~~l~~A~~~Gin~fDTA 95 (354)
.+.-+.|.++|+..+|--
T Consensus 144 ~~AA~ra~~aGfDgVeih 161 (343)
T cd04734 144 ADAARRCQAGGLDGVELQ 161 (343)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 344456678999988753
No 165
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=35.71 E-value=3.2e+02 Score=24.38 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCC------HHHHHHHHHHHHhc
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKKR 215 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~------~~~l~~~~~~~~~~ 215 (354)
.+.+.-.+-++....+++.||||+=+-. ..+..+.+.+..+.|.++-|+ |.|+ .+.+...++.+...
T Consensus 75 ~~~~~~~~ll~~~~~~~~~d~vDiEl~~------~~~~~~~l~~~~~~~~~kvI~-S~H~f~~tp~~~~l~~~~~~~~~~ 147 (228)
T TIGR01093 75 GNEEEYLEELKRAADSPGPDFVDIELFL------PDDAVKELINIAKKGGTKIIM-SYHDFQKTPSWEEIVERLEKALSY 147 (228)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccC------CHHHHHHHHHHHHHCCCEEEE-eccCCCCCCCHHHHHHHHHHHHHh
Confidence 4445444556666688999999984322 134455555555567788777 6553 34555555555544
Q ss_pred C
Q 018530 216 G 216 (354)
Q Consensus 216 ~ 216 (354)
|
T Consensus 148 g 148 (228)
T TIGR01093 148 G 148 (228)
T ss_pred C
Confidence 4
No 166
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.68 E-value=3.6e+02 Score=24.97 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCC-C---CChHHHHHHHHHHHH--cCCc-cEEeccCCCHHHHHHHHHHH
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~-~---~~~~~~~~aL~~l~~--~Gki-r~iGvSn~~~~~l~~~~~~~ 212 (354)
...+.+.+++.++..++.+|+ |-+++-... + .+.+|-.+.++..++ .|++ -.+|++..+.....++.+.+
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv---~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGV---DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCC---CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 357888889989888886676 555554332 2 334444444444443 3554 45799888887777777778
Q ss_pred HhcCCCeeeeccccCcccCCcchhhHHHH----HHHc-CcEEEEcc-cCCCCCCC
Q 018530 213 KKRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYC-PIAQDSPI 261 (354)
Q Consensus 213 ~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~----~~~~-gi~v~a~s-pl~~G~L~ 261 (354)
+..|..-.++..+|..- .. +++++++ |+.- ++.++.|. |...|.-.
T Consensus 93 ~~~Gad~v~~~~P~y~~-~~--~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l 144 (288)
T cd00954 93 EELGYDAISAITPFYYK-FS--FEEIKDYYREIIAAAASLPMIIYHIPALTGVNL 144 (288)
T ss_pred HHcCCCEEEEeCCCCCC-CC--HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCC
Confidence 88887655555555432 22 2245554 4566 78999995 54455433
No 167
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=35.66 E-value=3.9e+02 Score=26.81 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=61.5
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCC----ccceEEEc
Q 018530 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLH 169 (354)
Q Consensus 95 A~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~-R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~d----yiDl~~lH 169 (354)
.-+||. |+.|-++|++...+.| -+=|+|.|-+.. ..-.+.+..-+++.-+.++-+ .+.++.+|
T Consensus 65 d~VfGG---------~~~L~~~I~~~~~~~~~p~~I~V~tTC~~---eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~ 132 (454)
T cd01973 65 SAVFGG---------AKRVEEGVLVLARRYPDLRVIPIITTCST---EIIGDDIEGVIRKLNEALKEEFPDREVHLIPVH 132 (454)
T ss_pred ceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCchH---hhhccCHHHHHHHHHhhhhhccCCCCCeEEEee
Confidence 356777 8888888887654432 234677777643 122233333333332222111 37889999
Q ss_pred cCCCCC--hHHHHHHHHHHHH--------cCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 170 WAGIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 170 ~p~~~~--~~~~~~aL~~l~~--------~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
.|+... ..+...+++.+.+ +++|--||-. .++..++++.+..+..|+++.
T Consensus 133 tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~-~~~~D~~ei~~lL~~~Gl~v~ 192 (454)
T cd01973 133 TPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGW-VNPGDVVELKHYLSEMDVEAN 192 (454)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCC-CChHHHHHHHHHHHHcCCCEE
Confidence 888732 2223333333322 4667778744 345566666666666676544
No 168
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=35.55 E-value=1.8e+02 Score=28.32 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----ChHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----~~~~~~~aL~ 184 (354)
|+.|-+++++...+...+=|+|.|-..+ ..-.+.+..-+++.-++.+. .++.+|-+... +.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777788876544321356777776632 12222233333333344443 88888877651 2455666665
Q ss_pred HHH-H------cCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeec--------------cccCcccCCcchhhHHHHHH
Q 018530 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--------------VNYSLIYRKPEENGVKAACD 243 (354)
Q Consensus 185 ~l~-~------~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q--------------~~~n~~~~~~~~~~l~~~~~ 243 (354)
+.. + .+.|--+|.++..+..+.++.+..+..|++....- ..+|+.........+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 555 2 36777889998876666777776776665322221 12444433322112445555
Q ss_pred H-cCcEEEE-cccCC
Q 018530 244 E-LGITLIA-YCPIA 256 (354)
Q Consensus 244 ~-~gi~v~a-~spl~ 256 (354)
+ .|+.++. -.|++
T Consensus 213 e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 213 ERFGIPYLYFPSPYG 227 (398)
T ss_dssp HHHT-EEEEEC-SBS
T ss_pred HHhCCCeeecccccc
Confidence 5 4999998 34443
No 169
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=35.42 E-value=3.2e+02 Score=25.22 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHh
Q 018530 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (354)
Q Consensus 78 ~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~r 157 (354)
.+.++.|++.|=-.+=.+.+||+ =++.+.++.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 45677888887777778889998 567888887765 345555443 2234466666666777
Q ss_pred hCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc
Q 018530 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 158 Lg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki 192 (354)
.|.+.++ ..+.+..+.+..++|.+
T Consensus 170 ~g~~~i~-----------~~~~~~~~~~~Lk~g~~ 193 (295)
T PF03279_consen 170 FGIELIP-----------KGEGIRELIRALKEGGI 193 (295)
T ss_pred cCCeEec-----------chhhHHHHHHHhccCCE
Confidence 7754433 11225555556666764
No 170
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.31 E-value=2.8e+02 Score=26.86 Aligned_cols=92 Identities=11% Similarity=0.080 Sum_probs=61.9
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHHcCC----ccEEec--cCCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~~Gk----ir~iGv--Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
+-||.+++ .+.++++++++++.+.+. |+++=+ -|.+.+.++++.+.++.. +..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecC
Confidence 56777764 235889999998877542 345444 455668888888877543 4567778898
Q ss_pred cccCC----cchh---hHHHHHHHcCcEEEEcccCCCCC
Q 018530 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 228 ~~~~~----~~~~---~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
++... +... .+.+.++++|+.+......+..+
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDI 339 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 87532 1111 35667889999998887776543
No 171
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=35.27 E-value=15 Score=35.82 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.4
Q ss_pred cccccccCCCC-ccCCCCccccccc
Q 018530 325 SPGQCCANPRS-QKCRTGCRIRGCI 348 (354)
Q Consensus 325 aw~~c~~~~~~-~~c~~gi~i~~~~ 348 (354)
.+..|..|+.| .-||++|++++++
T Consensus 52 ~~~~C~~C~~C~~~CP~~i~~~~~i 76 (396)
T PRK11168 52 SLKYCSNCKRCEVACPSGVKIGDII 76 (396)
T ss_pred CCCcCcCcCccCcccCCCCCHHHHH
Confidence 34578888889 6699999999876
No 172
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.89 E-value=4.4e+02 Score=26.69 Aligned_cols=120 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 018530 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~ 156 (354)
+....-+|+++|++.||||-. +-|...|...-|.++ .+|+..+ ++ ...+.+.+...-+. ++
T Consensus 220 A~An~laAieAGad~vD~ai~-g~g~gagN~~tE~lv-~~L~~~g----~~------------tgiDl~~L~~~a~~-~~ 280 (468)
T PRK12581 220 SQMTYLAAVEAGADRIDTALS-PFSEGTSQPATESMY-LALKEAG----YD------------ITLDETLLEQAANH-LR 280 (468)
T ss_pred HHHHHHHHHHcCCCEEEeecc-ccCCCcCChhHHHHH-HHHHhcC----CC------------CCcCHHHHHHHHHH-HH
Q ss_pred hhCCCccceEE----EccCCC------CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 157 RLGLSSVELYQ----LHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 157 rLg~dyiDl~~----lH~p~~------~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
.+...|.+..+ +..++. .+-...=....+|++.|. ..-=++.++++.++-+..|.+|.+
T Consensus 281 ~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~------~dr~~ev~~e~~~V~~~lG~p~~V 349 (468)
T PRK12581 281 QARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANA------ESKLEEVLAEVPRVRKDLGYPPLV 349 (468)
T ss_pred HHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCCc------HhhHHHHHHHHHHHHHHcCCCCEE
No 173
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=34.87 E-value=3e+02 Score=24.49 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.++++..+.++.+++.-=...=.-.+.|..-. ..+..+...++.... |.-+||=|+.... ...
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T----~~~~~m~~vl~~l~~---~gl~FvDS~T~~~----------s~a 133 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFT----SDREAMRWVLEVLKE---RGLFFVDSRTTPR----------SVA 133 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH----C-HHHHHHHHHHHHH---TT-EEEE-S--TT-----------SH
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCcccc----CCHHHHHHHHHHHHH---cCCEEEeCCCCcc----------cHH
Confidence 56788999999999862222211223333221 238888888877763 6677886766421 112
Q ss_pred HHHHHhhCCC--ccceEEEccCCCCChHHHH-HHHHHHHHcCCccEEeccCC-CHHHHHHHHHHHHhcCC
Q 018530 152 KDSLFRLGLS--SVELYQLHWAGIWGNEGFI-DGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 152 e~SL~rLg~d--yiDl~~lH~p~~~~~~~~~-~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~ 217 (354)
.+.-+++|+. ..|+|+=|..+.......+ ++....+++|.+-.||=..- +.+.|++.....+..|+
T Consensus 134 ~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 134 PQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp HHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred HHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 3444566655 3455544443322233333 33444566787666663332 33455555544444444
No 174
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=34.80 E-value=86 Score=28.76 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCC----HHHHHHHHHHHHhcCCCeee
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS----EKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~----~~~l~~~~~~~~~~~~~~~~ 221 (354)
...+++.|+-.| +|||++=+-|-.. .+.+-+-+.++-+++-|.--+.|=+-+. ...+++.++.++..| |++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCE
Confidence 356777777777 7999999988554 3333344444444555555555533221 234555555565544 555
Q ss_pred eccccCcccCCcchh-hHHHHHHHcCcEEEE
Q 018530 222 NQVNYSLIYRKPEEN-GVKAACDELGITLIA 251 (354)
Q Consensus 222 ~Q~~~n~~~~~~~~~-~l~~~~~~~gi~v~a 251 (354)
+.+.=..+.-..++. .++..+++.|..|+.
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 555444443333322 577888888877664
No 175
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=34.76 E-value=2.7e+02 Score=30.80 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhh-CCCccceEEEccCCCCC-----hHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG-----NEGFIDGL 183 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rL-g~dyiDl~~lH~p~~~~-----~~~~~~aL 183 (354)
|+.|-++|++...+.+-+=|+|.|-... ..-.+.+..-+++.-++. ...-+.++.++.|+... ...++++|
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~---eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLT---ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH---hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 7788888877543322345777776632 122233333333322221 11236899999988732 23333333
Q ss_pred H-HHH-----HcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 184 G-DAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 184 ~-~l~-----~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
. .+. ..++|--||-++.++..++++.+..+..|+++.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 221 3467888887776677777777777777776533
No 176
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.73 E-value=2.2e+02 Score=27.54 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHc-CC---ccEEec--cCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCc-----ch--hhHHH
Q 018530 174 WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----EE--NGVKA 240 (354)
Q Consensus 174 ~~~~~~~~aL~~l~~~-Gk---ir~iGv--Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~-----~~--~~l~~ 240 (354)
++.+++++++.++.+. |+ +-++=+ -|-+++.+.++.+..+ +.+..++-++||+..... .+ ..+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4577888888777554 42 123322 3678888888887764 346788889998854322 11 14666
Q ss_pred HHHHcCcEEEEcccCCCCC
Q 018530 241 ACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 241 ~~~~~gi~v~a~spl~~G~ 259 (354)
..+++|+.+......|.-.
T Consensus 301 ~L~~~gi~~tiR~~~G~di 319 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQDV 319 (344)
T ss_pred HHHHCCceEEEECCCCCch
Confidence 7789999999998887643
No 177
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=34.55 E-value=1.6e+02 Score=26.79 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhCCCccceEEEccCCC--C--ChHHHHHHHHHHHHcCC-ccEEeccCC------CHHHHHHHHHHH
Q 018530 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI--W--GNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKL 212 (354)
Q Consensus 144 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~--~~~~~~~aL~~l~~~Gk-ir~iGvSn~------~~~~l~~~~~~~ 212 (354)
++.+..+++...+. .- -+-| +++.-+. . .....++.+++|++.|. |..||+-.| ++..+...++..
T Consensus 102 ~~~i~~af~~ar~~-~P-~a~l-~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREA-DP-DAKL-FYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHh-CC-CCEE-EEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 46666666655433 22 1222 3342221 1 13467888999999998 999998655 467788888777
Q ss_pred HhcCCCeeeeccccCcccCC----cchhhHHHHHHHcC--cEEEEcc
Q 018530 213 KKRGIPLASNQVNYSLIYRK----PEENGVKAACDELG--ITLIAYC 253 (354)
Q Consensus 213 ~~~~~~~~~~Q~~~n~~~~~----~~~~~l~~~~~~~g--i~v~a~s 253 (354)
...|.++.+-.+.+...... ..-..+++.|.++. .+|+-|.
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg 225 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWG 225 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeC
Confidence 77777777766666543210 01135888888775 5666664
No 178
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.38 E-value=4e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCc--cEEeccCCCHHHHH
Q 018530 180 IDGLGDAVEQGLV--KAVGVSNYSEKRLR 206 (354)
Q Consensus 180 ~~aL~~l~~~Gki--r~iGvSn~~~~~l~ 206 (354)
-+.|..+++.|.- -++|+=+++...++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~ 145 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIRE 145 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHH
Confidence 3455567777863 56888888777664
No 179
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=34.27 E-value=15 Score=36.01 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=19.4
Q ss_pred ccccccCCCC-ccCCCCcccccccc
Q 018530 326 PGQCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 326 w~~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
+..|..|+.| .-||+||++++++.
T Consensus 51 ~~~C~~C~~C~~~CP~~i~~~~~i~ 75 (397)
T TIGR03379 51 LKYCTNCKRCEVACPSDVKIGDIIA 75 (397)
T ss_pred cccCcCcCccchhcCCCCCHHHHHH
Confidence 3478888889 66999999998763
No 180
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=34.10 E-value=4.7e+02 Score=26.17 Aligned_cols=116 Identities=11% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHHHH-hccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCC
Q 018530 113 LGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL 191 (354)
Q Consensus 113 lG~al~-~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gk 191 (354)
+.+.+. ..+.....++|+|++-. ..+++-.++-| ++-=|.+.+-.|.+ ..++.-+...|
T Consensus 141 ia~~l~~~~g~~~~~~~IiiT~G~------------q~al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g- 200 (459)
T COG1167 141 IAAYLLARRGISCEPEQIVITSGA------------QQALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG- 200 (459)
T ss_pred HHHHHHHhcCCccCcCeEEEeCCH------------HHHHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-
Confidence 444454 44443334578877764 34555333333 33457777777754 23333333334
Q ss_pred ccEEeccC----CCHHHHHHHHHHHHhcCCCeeeec----cccCcccCCcchhhHHHHHHHcCcEEEE
Q 018530 192 VKAVGVSN----YSEKRLRNAYEKLKKRGIPLASNQ----VNYSLIYRKPEENGVKAACDELGITLIA 251 (354)
Q Consensus 192 ir~iGvSn----~~~~~l~~~~~~~~~~~~~~~~~Q----~~~n~~~~~~~~~~l~~~~~~~gi~v~a 251 (354)
++.++|.. .+++.++++.+. ..+++.++. ++............++++|+++|+-+|-
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~---~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQ---WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHhh---cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 45555543 345555555332 122333322 2222222222223577777777777664
No 181
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.63 E-value=4.1e+02 Score=25.00 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccC-CC---CChH---HHHHHHHHHHHcCCc-cEEeccCCCHHHHHHHHHHH
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNE---GFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p-~~---~~~~---~~~~aL~~l~~~Gki-r~iGvSn~~~~~l~~~~~~~ 212 (354)
..+.+.+++.++..++ -| +|-+++-.- .+ ...+ +++++..+.. .|++ -.+|++..+.....++.+.+
T Consensus 25 ~iD~~~l~~lv~~li~-~G---v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A 99 (309)
T cd00952 25 TVDLDETARLVERLIA-AG---VDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRAL 99 (309)
T ss_pred CcCHHHHHHHHHHHHH-cC---CCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHH
Confidence 4667777777776666 44 566655432 22 2333 4455444444 4544 56899988887777777778
Q ss_pred HhcCCCeeeeccc-cCcccCCcchhhHHHH----HHHc-CcEEEEcc-cCCCCCCC
Q 018530 213 KKRGIPLASNQVN-YSLIYRKPEENGVKAA----CDEL-GITLIAYC-PIAQDSPI 261 (354)
Q Consensus 213 ~~~~~~~~~~Q~~-~n~~~~~~~~~~l~~~----~~~~-gi~v~a~s-pl~~G~L~ 261 (354)
+..|..-..+-.+ |....+ ++++++ |+.- ++.++.|. |-..|...
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~----~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l 151 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDV----DTAVQFYRDVAEAVPEMAIAIYANPEAFKFDF 151 (309)
T ss_pred HHhCCCEEEECCCcCCCCCH----HHHHHHHHHHHHhCCCCcEEEEcCchhcCCCC
Confidence 8888764444444 333321 246654 4556 69999994 54455433
No 182
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.62 E-value=4.1e+02 Score=25.00 Aligned_cols=50 Identities=8% Similarity=0.157 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhc
Q 018530 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~ 120 (354)
.+|.+...+.++..++.|++-+=..-..|.+.+-...+=++++..+.+..
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~ 74 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV 74 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh
Confidence 57888999999999999999776555554433211112234455555544
No 183
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=33.60 E-value=1.5e+02 Score=29.58 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC-----hHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-----~~~~~~aL~ 184 (354)
|+.|-++|++...+.+.+=++|.|-+-..--.-+-+.+-+.++.-... ..-+.++.++-|+... ...++++|.
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~--~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQ--HKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhccc--ccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 788888887765433234577777664311122333333333221111 1136788888887632 333444442
Q ss_pred -HHHH--------cCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 185 -DAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 185 -~l~~--------~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
.+.. .++|--||-++.++..+.++.+..+..|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceE
Confidence 2221 45677778777766666666666666677653
No 184
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=33.30 E-value=17 Score=37.25 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=20.6
Q ss_pred hhhcccccccCCCC-ccCCCCccccccc
Q 018530 322 LAISPGQCCANPRS-QKCRTGCRIRGCI 348 (354)
Q Consensus 322 lAlaw~~c~~~~~~-~~c~~gi~i~~~~ 348 (354)
++=-|..|..|+|| +-||+.|+|-.++
T Consensus 433 l~~l~d~C~~C~rCEq~Cpk~ipi~nm~ 460 (772)
T COG1152 433 LEDLHDVCIGCGRCEQVCPKNIPILNMI 460 (772)
T ss_pred HHHHHHHhhhhhhhhhhCcccCchhhHH
Confidence 33336789999999 8899999987654
No 185
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=33.18 E-value=1.6e+02 Score=27.67 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=60.3
Q ss_pred HHhhCCCccceEEEcc-CCCCChHHH-----HHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCc
Q 018530 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~-p~~~~~~~~-----~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~ 228 (354)
++-++-.++|++.+.. .......+. -+.+.+..++--=|++|+.+.++..-+.+.+..+..--..-++++..++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 7778888999999984 111111222 2567777777778999999997753232222222221123344444444
Q ss_pred ccCCc----ch-hhHHHHHHHcCcEEEEcccCC
Q 018530 229 IYRKP----EE-NGVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 229 ~~~~~----~~-~~l~~~~~~~gi~v~a~spl~ 256 (354)
..+.. .. ..+.++|+++|+.|+......
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC
Confidence 33221 11 258999999999998865554
No 186
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.09 E-value=3.9e+02 Score=24.58 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCC-ccEEeccCCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gk-ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
+..+-+.|.++|+++|.+-. +....+.+++.+.+.+.++ .+-.++...+.+.++.+.+. ..+.+-+.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~-----P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~------g~~~i~i~~ 92 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS-----PAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET------GVDGVDLVF 92 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC-----CCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc------CcCEEEEEE
Q ss_pred Cc--------ccCCcchh-----hHHHHHHHcCcEEEEc
Q 018530 227 SL--------IYRKPEEN-----GVKAACDELGITLIAY 252 (354)
Q Consensus 227 n~--------~~~~~~~~-----~l~~~~~~~gi~v~a~ 252 (354)
+. +....++. +++.+++++|+.|...
T Consensus 93 ~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 93 GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 187
>PRK12928 lipoyl synthase; Provisional
Probab=33.08 E-value=4.2e+02 Score=24.86 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHcC---CccE---EeccCCCHHHHHHHHHHHHhcCCCeeeecc-ccCc-------cc---CCcchhh
Q 018530 175 GNEGFIDGLGDAVEQG---LVKA---VGVSNYSEKRLRNAYEKLKKRGIPLASNQV-NYSL-------IY---RKPEENG 237 (354)
Q Consensus 175 ~~~~~~~aL~~l~~~G---kir~---iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~-~~n~-------~~---~~~~~~~ 237 (354)
..++.++.++.+++.| .++. +|+ +=+.+.+.+.+..+...++ +.+.+ +|.. +. ...+...
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~ 262 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFEA 262 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCC--CEEEEEcCCCCCccCCceeeccCHHHHHH
Confidence 4678899999999988 4443 577 5577777777777766543 33332 3321 11 1111235
Q ss_pred HHHHHHHcCcEEEEcccCCC
Q 018530 238 VKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 238 l~~~~~~~gi~v~a~spl~~ 257 (354)
+..++.+.|...++.+||-.
T Consensus 263 ~~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 263 LGQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHHcCCceeEecCccc
Confidence 77888899999898888864
No 188
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=32.69 E-value=4.4e+02 Score=25.91 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcCC
Q 018530 205 LRNAYEKLKKRGI 217 (354)
Q Consensus 205 l~~~~~~~~~~~~ 217 (354)
++++.+.++..++
T Consensus 164 l~~I~~la~~~gi 176 (405)
T PRK08776 164 LRFVIEAAHKVGA 176 (405)
T ss_pred HHHHHHHHHHcCC
Confidence 3444444444443
No 189
>PRK14017 galactonate dehydratase; Provisional
Probab=32.56 E-value=4.7e+02 Score=25.35 Aligned_cols=158 Identities=14% Similarity=0.117 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccc-----cCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~-----Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
.++..+.+..+.+.|++.|=.=-. ++.... ...-.+.+ +++++.- -.++.|.-=.. ..++.+...
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~--~~~d~~~i-~avr~~~----g~~~~l~vDaN---~~w~~~~A~ 194 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK--VDAAVARV-AAVREAV----GPEIGIGVDFH---GRVHKPMAK 194 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH--HHHHHHHH-HHHHHHh----CCCCeEEEECC---CCCCHHHHH
Confidence 355667778888999998754210 000000 00001222 2333321 12444443332 235555432
Q ss_pred HHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
+- -+.|+. +++.++-.|-+ .+-++.+.+|++...+. +.|=|-++...+..+++.. -.+++|+..+
T Consensus 195 ~~-~~~l~~-----~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-----a~d~v~~d~~ 260 (382)
T PRK14017 195 VL-AKELEP-----YRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-----GVDIIQPDLS 260 (382)
T ss_pred HH-HHhhcc-----cCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-----CCCeEecCcc
Confidence 22 223333 35555555532 12357788888887665 6666778888888876641 3678888766
Q ss_pred cccCCcchhhHHHHHHHcCcEEEEcccC
Q 018530 228 LIYRKPEENGVKAACDELGITLIAYCPI 255 (354)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~v~a~spl 255 (354)
-.--=.....+.++|+++||.++..+..
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 4421111225899999999999987543
No 190
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=32.53 E-value=4.1e+02 Score=24.58 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeecccccC
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYG 99 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg 99 (354)
...|.+...+.++..++.|++-+=..-..|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG 43 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTG 43 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCc
Confidence 356778889999999999988665443333
No 191
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.52 E-value=2.3e+02 Score=24.51 Aligned_cols=84 Identities=26% Similarity=0.340 Sum_probs=54.6
Q ss_pred HHHhhCCCc----cceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcc
Q 018530 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (354)
Q Consensus 154 SL~rLg~dy----iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~ 229 (354)
.|++.|+.- +|-=++-|.++...+++.+.+++++++| |+-+=+||.+...+..+.+. .++++. - -
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~---l~v~fi--~-----~ 90 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK---LGVPFI--Y-----R 90 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh---cCCcee--e-----c
Confidence 456666432 4556777776666789999999999999 56677999999998887543 222221 1 1
Q ss_pred cCCcchhhHHHHHHHcCcE
Q 018530 230 YRKPEENGVKAACDELGIT 248 (354)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~ 248 (354)
-..+....+..++++.++.
T Consensus 91 A~KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLP 109 (175)
T ss_pred ccCccHHHHHHHHHHcCCC
Confidence 1222233577777777653
No 192
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=32.26 E-value=4e+02 Score=24.43 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCC-------CCCHHHHHHHH
Q 018530 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (354)
Q Consensus 79 ~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~-------~~~~~~i~~~l 151 (354)
+.++.|++.|...+.....- + . ++.+ ..+++++ -.+++...-+.... ....+.+...+
T Consensus 86 ~vi~~al~~G~~iINsis~~-~--~------~~~~-~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 150 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGG-Q--D------PAML-EVAAEYG-----VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFL 150 (257)
T ss_pred HHHHHHHHcCCCEEEECCCC-C--C------chhH-HHHHHcC-----CcEEEEeCCCCCcccccCCCcccHHHHHHHHH
Confidence 45777888888877644221 1 1 3333 4455554 35666554332111 00123333444
Q ss_pred HHH---HHhhCCCccceEEEccCCCC----ChHHHHHHHHHHHHcCCccEEeccCCC
Q 018530 152 KDS---LFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (354)
Q Consensus 152 e~S---L~rLg~dyiDl~~lH~p~~~----~~~~~~~aL~~l~~~Gkir~iGvSn~~ 201 (354)
++. +.+.|++.-|+++=-..... ..-++++.++++++.|.=-.+|+||-+
T Consensus 151 ~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 151 EARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 444 45568875566553322221 134677788888887866689999875
No 193
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=32.03 E-value=4.6e+02 Score=25.09 Aligned_cols=150 Identities=13% Similarity=0.040 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
++..+.+..+++.|++.|=.=-....-.. ..+.+ +++++.- -.++.|..-.. ..++.+...+-++ .
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~-----d~~~v-~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADE-----DLAVV-RSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHh-----HHHHH-HHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 44555566667778775532110000000 02222 3444332 13455554442 3355554333332 3
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc-cEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCc
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki-r~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~ 233 (354)
|+.+ ++.++-.|-. .+-++.+.++++.--| -+.|=+.+++..+.++++. --++++|+..+-.--=.
T Consensus 209 l~~~-----~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQE-----GLTWIEEPTL---QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHcC-----CCCEEECCCC---CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 3444 4455555432 2246777778776543 3566677888888887654 13777887766542211
Q ss_pred chhhHHHHHHHcCcEEEE
Q 018530 234 EENGVKAACDELGITLIA 251 (354)
Q Consensus 234 ~~~~l~~~~~~~gi~v~a 251 (354)
+...+.++|+++|+.++.
T Consensus 276 ~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 276 GWLRASALAEQAGIPMSS 293 (355)
T ss_pred HHHHHHHHHHHcCCeecc
Confidence 222589999999999864
No 194
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=31.97 E-value=24 Score=32.37 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCcchhhhcccc
Q 018530 303 QNQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 303 en~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+..+.+.+++++++.|++|+||+|..
T Consensus 216 ~~~~~l~~~a~~~g~s~~q~al~~~l 241 (283)
T PF00248_consen 216 ELADALRELAEEHGVSPAQLALRWVL 241 (283)
T ss_dssp GGHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcccccchhhhhhhh
Confidence 67778999999999999999999855
No 195
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=31.65 E-value=13 Score=36.99 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=18.0
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| .-||+||++++++.
T Consensus 344 ~C~~Cg~C~~vCP~gI~~~~li~ 366 (432)
T TIGR00273 344 LSSLCGACREVCPVKIPLPELIR 366 (432)
T ss_pred cchhhhhhhccCCCCCcHHHHHH
Confidence 57777779 66999999998764
No 196
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.61 E-value=4.2e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHC-CCCeeecccccCC
Q 018530 71 DRKMKAAKAAFDTSLDN-GITFFDTAEVYGS 100 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~-Gin~fDTA~~Yg~ 100 (354)
..|.+...+.++..++. |++-+=..-.-|.
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE 47 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGE 47 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcC
Confidence 46778888899999999 9887755544443
No 197
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=31.52 E-value=17 Score=35.75 Aligned_cols=21 Identities=14% Similarity=0.456 Sum_probs=18.2
Q ss_pred ccccCCCC-ccCCCCccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCI 348 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~ 348 (354)
.|..|+.| .-||+||++++++
T Consensus 74 ~C~~C~~C~~~CP~~v~~~~li 95 (407)
T PRK11274 74 RCLTCRNCETTCPSGVQYGRLL 95 (407)
T ss_pred cCccccchhhhCCCCCCHHHHH
Confidence 68888889 6699999999987
No 198
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=31.49 E-value=4.6e+02 Score=24.90 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=40.8
Q ss_pred ceEEEEeccCCCC---CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-------CChHHHHHHHHHHHHcCCccEEe
Q 018530 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (354)
Q Consensus 127 ~~v~I~TK~~~~~---~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-------~~~~~~~~aL~~l~~~Gkir~iG 196 (354)
+++.|..|+.... ...+.+... .+-+.|+..|+|+|+ +|.... ......++.+.++++.=.|.-++
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 4667888876421 123444333 233456667766555 342110 11112245555666655566666
Q ss_pred ccCC-CHHHHHHHHH
Q 018530 197 VSNY-SEKRLRNAYE 210 (354)
Q Consensus 197 vSn~-~~~~l~~~~~ 210 (354)
..+. +++..+++++
T Consensus 296 ~G~i~t~~~a~~~l~ 310 (336)
T cd02932 296 VGLITDPEQAEAILE 310 (336)
T ss_pred eCCCCCHHHHHHHHH
Confidence 6665 5666666654
No 199
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.41 E-value=4.6e+02 Score=25.39 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=62.5
Q ss_pred eEEEccCCC------------CChHHHHHHHHHHHHcC--Cc--cEEecc--CCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQG--LV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 165 l~~lH~p~~------------~~~~~~~~aL~~l~~~G--ki--r~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
.+-||.|+. ++.+++++++.+..+.. +| -++=+. |.+.+++.++.+.++ +.+..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 477898775 34688888888865443 22 334443 667888888888775 34578889999
Q ss_pred CcccCC----cch---hhHHHHHHHcCcEEEEcccCCCCC
Q 018530 227 SLIYRK----PEE---NGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 227 n~~~~~----~~~---~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
|+.... +.. ....+..+++|+.+......+.-.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 975331 111 135667789999999988777533
No 200
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=31.34 E-value=5.5e+02 Score=25.74 Aligned_cols=140 Identities=18% Similarity=0.192 Sum_probs=70.5
Q ss_pred HHHHHHHHHhccCCCCC-ceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC---hHH---HHHH
Q 018530 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEG---FIDG 182 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R-~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~---~~~---~~~a 182 (354)
|+.|-++|++.....|+ +=++|.|-... ..-.+.+..-+++.-++.+ .+.++.+|.|+... ..+ +.++
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 88888888876543332 23677776632 2223333333333333332 26899999887632 112 2222
Q ss_pred -HHHHH--------HcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee-ec-------------cccCcccCCcchhhHH
Q 018530 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS-NQ-------------VNYSLIYRKPEENGVK 239 (354)
Q Consensus 183 -L~~l~--------~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~-~Q-------------~~~n~~~~~~~~~~l~ 239 (354)
++++. ..++|--||-.++ +..++++.+..+..|+.+.. .. ..+|+.........+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A 262 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIA 262 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHH
Confidence 22333 2356888885554 34455555556666765431 11 1233332111111234
Q ss_pred HHHH-HcCcEEEEcccC
Q 018530 240 AACD-ELGITLIAYCPI 255 (354)
Q Consensus 240 ~~~~-~~gi~v~a~spl 255 (354)
++.+ +.|+.++...|+
T Consensus 263 ~~Le~~~GiP~~~~~~~ 279 (457)
T TIGR01284 263 NELEERYGIPRLDIDFF 279 (457)
T ss_pred HHHHHHhCCCeEecccC
Confidence 4444 459999977653
No 201
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=31.02 E-value=2.4e+02 Score=27.07 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.4
Q ss_pred hHHHHHHHcCcEEEEcccCCCCC
Q 018530 237 GVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
++.++|++.||.++. |||....
T Consensus 94 ~Lke~a~~~Gi~~~S-SPfd~~s 115 (347)
T COG2089 94 QLKEYARKRGIIFFS-SPFDLTA 115 (347)
T ss_pred HHHHHHHHcCeEEEe-cCCCHHH
Confidence 689999999999986 7887543
No 202
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=30.81 E-value=3.1e+02 Score=25.38 Aligned_cols=53 Identities=9% Similarity=-0.132 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCccceEEEccCCC--CChHHHHHHHHHHHHcCCc
Q 018530 140 WRLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rL------g~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gki 192 (354)
..++.+...+..+-..+-+ ++++|-|=.+..+.. .+..+++++-+.|.++|-+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4567666555555555544 566666655555444 4578999999999999964
No 203
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.72 E-value=3.7e+02 Score=26.77 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=69.9
Q ss_pred HHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhh
Q 018530 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (354)
Q Consensus 79 ~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rL 158 (354)
..|+++++.|- +-....||+... --..|++.|..... ..+.-.+-+ ..+-+.+++.++++.+.+
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~-----GKTTlA~liA~~~~----~~f~~~sAv-----~~gvkdlr~i~e~a~~~~ 100 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGT-----GKTTLARLIAGTTN----AAFEALSAV-----TSGVKDLREIIEEARKNR 100 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCC-----CHHHHHHHHHHhhC----CceEEeccc-----cccHHHHHHHHHHHHHHH
Confidence 46888888873 233446875221 27788888877642 222222222 356788999999998888
Q ss_pred CCCccceEEE---ccCCCCChHHHHHHHHHHHHcCCccEEeccCCCH
Q 018530 159 GLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (354)
Q Consensus 159 g~dyiDl~~l---H~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~ 202 (354)
+...==++++ |+.+ ...-++|--.++.|.|-.||.++-+|
T Consensus 101 ~~gr~tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 101 LLGRRTILFLDEIHRFN----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred hcCCceEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 7544445555 5553 45678888899999999999987655
No 204
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.56 E-value=5.8e+02 Score=25.80 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHcCCccEEeccC----CCHHHHHHHHHHHHhcC-CCeee-eccccCcccCCcchhhHHHHHHHcCcEE
Q 018530 176 NEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGITL 249 (354)
Q Consensus 176 ~~~~~~aL~~l~~~Gkir~iGvSn----~~~~~l~~~~~~~~~~~-~~~~~-~Q~~~n~~~~~~~~~~l~~~~~~~gi~v 249 (354)
.+.+++.++.++++..++.+-++. .+...+.++.+.....+ +.+.. .+...+.+.++ .++++..++.|+..
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d---~ell~~l~~aG~~~ 300 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRD---ADILHLYRRAGLVH 300 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCC---HHHHHHHHHhCCcE
Confidence 455666666666544455554442 23344444444333332 22111 22222222221 13666666666544
Q ss_pred EE
Q 018530 250 IA 251 (354)
Q Consensus 250 ~a 251 (354)
+.
T Consensus 301 v~ 302 (497)
T TIGR02026 301 IS 302 (497)
T ss_pred EE
Confidence 43
No 205
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=30.07 E-value=19 Score=32.53 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=17.4
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| .-||+||++.+++.
T Consensus 199 ~C~~Cg~C~~~CP~gi~~~~~I~ 221 (232)
T PRK05950 199 RCHTIMNCVEVCPKGLNPTKAIG 221 (232)
T ss_pred cCcCcCCcCccccCCCCHHHHHH
Confidence 57777779 56999999987654
No 206
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=29.93 E-value=2.3e+02 Score=25.37 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCc
Q 018530 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (354)
Q Consensus 176 ~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi 247 (354)
..++.+.|+.|++.|.--.| +||.+...++..++.....+..++.+-..-......+...-+...+++.|+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 34688889999999854444 778777777777655433332223332222222222222235555566554
No 207
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=29.76 E-value=2.3e+02 Score=25.71 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCc
Q 018530 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (354)
Q Consensus 177 ~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi 247 (354)
.++.+.|+.|+++|..-+| +||.....+...++.....+..++.+-..-+.....+...-+...+++.|+
T Consensus 104 pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~ 173 (267)
T PRK13478 104 PGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGV 173 (267)
T ss_pred CCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCC
Confidence 4678888899999854444 667776666666554433333233332222222222221134555555554
No 208
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.45 E-value=5.1e+02 Score=24.78 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=53.6
Q ss_pred cceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHH
Q 018530 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (354)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~ 241 (354)
+++.++-.|-+ .+-++.+.+|++..-+. +.|=|.+++..+..+++. --++++|+.....---.....+.++
T Consensus 202 ~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GGit~~~~~~~l 273 (352)
T cd03325 202 YRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGGITELKKIAAM 273 (352)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 34555555532 22477888888876554 566677888888877553 1367888876543211112258999
Q ss_pred HHHcCcEEEEcc
Q 018530 242 CDELGITLIAYC 253 (354)
Q Consensus 242 ~~~~gi~v~a~s 253 (354)
|+++|+.++..+
T Consensus 274 A~~~gi~~~~h~ 285 (352)
T cd03325 274 AEAYDVALAPHC 285 (352)
T ss_pred HHHcCCcEeccC
Confidence 999999998654
No 209
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=29.43 E-value=1.6e+02 Score=28.33 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 179 FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 179 ~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
-++.+.+|+++..|. +.|=|-++...+.++++.. -++++|+...-.--=.....+..+|+++|+.++.-+-..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-----~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRG-----AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-----CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 456677777765554 5555666777777765531 2566666554432111112478888999998875443333
No 210
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.32 E-value=4.1e+02 Score=24.48 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
++.+|.++.+.++..+++..+.+.+++.- -+-..+++.|+.++...||+.+
T Consensus 205 s~~~l~~l~~~ik~~~v~~if~e~~~~~~-------~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 205 SPKQLAELVEFVKKSDVKYIFFEENASSK-------IAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHHHHHHcCCcEEEecccccc
Confidence 56778888877777777777666665431 1334567778877766677654
No 211
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=29.25 E-value=5.4e+02 Score=25.00 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC------hHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~------~~~~~~aL 183 (354)
|+.|-+++++...+.+.+=|+|.|-.-. ..-.+.+..-+++.-++.+ +.++.+|-+.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7888888887654332234666666532 2223334433333333444 7899999876522 34455555
Q ss_pred HHHH---------HcCCccEEeccCCCHHHHHHHHHHHHhcCCCe
Q 018530 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (354)
Q Consensus 184 ~~l~---------~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (354)
.+.. +.+.|--||..++ +..+.++.+..+..|+++
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gi~~ 189 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNI-GGDAWVIKPLLEELGIRV 189 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEecccc-chhHHHHHHHHHHcCCEE
Confidence 5443 2355778887765 334444444455556544
No 212
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=28.99 E-value=4.5e+02 Score=25.20 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
+.+++.+.++.+.+.|+..+..--.||- ...+.+.+++.++
T Consensus 132 ~~~~~~~ai~~lr~~g~~~v~iDli~Gl---------------------------------------Pgqt~~~~~~~l~ 172 (350)
T PRK08446 132 SQKQIIKAIENAKKAGFENISIDLIYDT---------------------------------------PLDNKKLLKEELK 172 (350)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCccceEEEccCCC----------CChHHHHHHHHHHHHcCCccEEeccCC
Q 018530 153 DSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~----------~~~~~~~~aL~~l~~~Gkir~iGvSn~ 200 (354)
..++ |+.++|.+|.+.-... .+.++.++...+..++-=-..+++|||
T Consensus 173 ~~~~-l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy~~yeis~f 229 (350)
T PRK08446 173 LAKE-LPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGFKQYEISNF 229 (350)
T ss_pred HHHh-cCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCCcEEEeehh
No 213
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=28.92 E-value=3.8e+02 Score=26.91 Aligned_cols=114 Identities=10% Similarity=0.100 Sum_probs=62.6
Q ss_pred ccccCCCCCCCCCchHHHHHHHHHhccCCCC-CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCC----ccceEEEc
Q 018530 95 AEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQLH 169 (354)
Q Consensus 95 A~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~-R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~d----yiDl~~lH 169 (354)
.-.||. |+.|-++|++...+.+ -+=|+|.|-+.. ..-.+.+..-++..-++|.-+ .+.++.+|
T Consensus 68 dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~ 135 (457)
T TIGR02932 68 SAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCST---ETIGDDIEGSIRKVNRALKKEFPDRKIKLVPVH 135 (457)
T ss_pred ceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCchH---HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEee
Confidence 346786 8888889988654331 234677666532 223333444444332222211 36889999
Q ss_pred cCCCC-----ChHHHHHHHHHHH-H-----cCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 170 WAGIW-----GNEGFIDGLGDAV-E-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 170 ~p~~~-----~~~~~~~aL~~l~-~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
.|+.. ..+.++++|.+.. + +++|--||-.+ ++..++++.+..+..|+++.+
T Consensus 136 tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~ 197 (457)
T TIGR02932 136 TPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANI 197 (457)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 88873 2344444444332 1 35677776443 355566666666666766544
No 214
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.87 E-value=1.3e+02 Score=30.96 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhh-CCCccceEEEccCCC
Q 018530 108 NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGI 173 (354)
Q Consensus 108 ~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rL-g~dyiDl~~lH~p~~ 173 (354)
-|-+.++++|-... ||+++.|.--. +.++ .-+-.||+|| |+.|+.-+.+-|..+
T Consensus 633 GsGkEF~~aLGGN~---pREQFTvVmLT------YERe---~VLm~sLeRL~gLPYLnKvvVVWNsp 687 (907)
T KOG2264|consen 633 GSGKEFSKALGGNR---PREQFTVVMLT------YERE---AVLMGSLERLHGLPYLNKVVVVWNSP 687 (907)
T ss_pred CchHHHHHHhcCCC---ccceEEEEEEE------ehHH---HHHHHHHHHhhCCcccceEEEEeCCC
Confidence 35777888886544 79998887665 3444 3477899999 799999988888655
No 215
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.86 E-value=91 Score=28.56 Aligned_cols=90 Identities=12% Similarity=0.057 Sum_probs=45.8
Q ss_pred hHHHHHHHcCcEEEEcccCCCCCCCchh-hhhhhhhcccchhhhhhhcccCCCceeeeCCCC---HhHHHHHHHHHHHHH
Q 018530 237 GVKAACDELGITLIAYCPIAQDSPIFAA-RLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS---PTTVEQNQGTRRELQ 312 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~~G~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~en~~~~~~la 312 (354)
+++++|.+.||..+..-.|...-+.++. ++..+..-...............++.+.+.|-. |+.+++.++-+++..
T Consensus 49 ~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T 128 (243)
T PRK14829 49 DVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELT 128 (243)
T ss_pred HHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHh
Confidence 5899999999998888777666554432 222211111111111122233446655444433 466666666655554
Q ss_pred HHhCCCcchhhhcc
Q 018530 313 QNFHTGRPQLAISP 326 (354)
Q Consensus 313 ~~~~~s~~qlAlaw 326 (354)
.....-.-.+|+++
T Consensus 129 ~~~~~~~Lnia~~Y 142 (243)
T PRK14829 129 KNNTTMDLVFCVNY 142 (243)
T ss_pred ccCCceEEEEEecC
Confidence 44333333444443
No 216
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=28.80 E-value=12 Score=25.77 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=11.5
Q ss_pred cccCCCCcc-CCCCccccc
Q 018530 329 CCANPRSQK-CRTGCRIRG 346 (354)
Q Consensus 329 c~~~~~~~~-c~~gi~i~~ 346 (354)
|..|+.|.+ ||+++.++.
T Consensus 2 C~~Cg~C~~~CP~~~~~~~ 20 (61)
T PF13534_consen 2 CTQCGYCVPACPSYIATPD 20 (61)
T ss_dssp ----STTGGGSHHHHHCTT
T ss_pred CCCCCcCcccCCCccccCc
Confidence 455566988 999998764
No 217
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.72 E-value=4.5e+02 Score=23.87 Aligned_cols=89 Identities=13% Similarity=0.014 Sum_probs=46.0
Q ss_pred HHHHhhCCCccceEEEccCCCC--ChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHHHHHHHHhcCCCeeeeccccCcc
Q 018530 153 DSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~~--~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~ 229 (354)
+-|+.+|. |.+.+|..+.. ...--++.+.++++.-.+.-|..... +++.+.++.+. .++.-.++=.-++--
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---GKADAALAASVFHYR 235 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CCcceeeEhHHHhCC
Confidence 34456664 66666764431 11123555666666655666655544 56677776543 223322221122211
Q ss_pred cCCcchhhHHHHHHHcCcEE
Q 018530 230 YRKPEENGVKAACDELGITL 249 (354)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~v 249 (354)
.-.. .++.++|+++|+.+
T Consensus 236 ~~~~--~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITI--GEVKEYLAERGIPV 253 (254)
T ss_pred CCCH--HHHHHHHHHCCCcc
Confidence 1222 25889999998864
No 218
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=28.70 E-value=3.1e+02 Score=23.45 Aligned_cols=83 Identities=12% Similarity=-0.095 Sum_probs=49.0
Q ss_pred HHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcC
Q 018530 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (354)
Q Consensus 111 ~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~G 190 (354)
+.+|++|++.+... +.|..++++- .++..+...+.++.+ ....+-......+...+++.++++.+
T Consensus 35 ~~~a~~L~~~~~~~--D~VL~Spa~R----------a~QTae~v~~~~~~~-~~~~~~~l~p~~d~~~~l~~l~~~~d-- 99 (163)
T COG2062 35 ELVAAWLAGQGVEP--DLVLVSPAVR----------ARQTAEIVAEHLGEK-KVEVFEELLPNGDPGTVLDYLEALGD-- 99 (163)
T ss_pred HHHHHHHHhcCCCC--CEEEeChhHH----------HHHHHHHHHHhhCcc-cceeccccCCCCCHHHHHHHHHHhcc--
Confidence 46799999887542 5566666652 455566666667632 11222221111345666666666666
Q ss_pred CccEEeccCCCHHHHHHH
Q 018530 191 LVKAVGVSNYSEKRLRNA 208 (354)
Q Consensus 191 kir~iGvSn~~~~~l~~~ 208 (354)
-+..+.+-.|+|..-+-+
T Consensus 100 ~v~~vllVgH~P~l~~l~ 117 (163)
T COG2062 100 GVGSVLLVGHNPLLEELA 117 (163)
T ss_pred cCceEEEECCCccHHHHH
Confidence 588899999988444333
No 219
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=28.67 E-value=5.9e+02 Score=25.22 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccC-CCCCceEEEEeccC
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ-RDPEVEVTVATKFA 136 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~-~~~R~~v~I~TK~~ 136 (354)
.++.+++..|++.|- ...|+.. -|...|-+.+.+.+.+... +...+||||++-..
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~ 136 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS 136 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccch
Confidence 567788888999883 3456553 2444667777777644332 22578999998873
No 220
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.52 E-value=4.8e+02 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeecccccCC
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~ 100 (354)
...|.+...+.++..++.|++-+=..-..|.
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE 47 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGE 47 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCc
Confidence 3577888999999999999987654443333
No 221
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=28.48 E-value=4.6e+02 Score=23.97 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEc-cCCCCChHHHHHHHHHHHH-cCCccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVE-QGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH-~p~~~~~~~~~~aL~~l~~-~Gkir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
+.++.+....-++. |.++|+++|++-+.- ++ .-++.++.+.+ ...++..+++.-+...++.+.+.
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~------~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~------ 81 (268)
T cd07940 15 VSLTPEEKLEIARQ-LDELGVDVIEAGFPAASP------GDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEA------ 81 (268)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCH------HHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHh------
Q ss_pred C----eeeeccccCcccCC-------------cchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhh
Q 018530 218 P----LASNQVNYSLIYRK-------------PEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTES 280 (354)
Q Consensus 218 ~----~~~~Q~~~n~~~~~-------------~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~ 280 (354)
. ++.+.+.+++-+.. ..-.+.+++++++|+.+. +++-..+. .....+...++.........
T Consensus 82 ~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-~~~~~~~~-~~~~~~~~~~~~~~~~G~~~ 159 (268)
T cd07940 82 LKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE-FSAEDATR-TDLDFLIEVVEAAIEAGATT 159 (268)
T ss_pred CCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE-EeeecCCC-CCHHHHHHHHHHHHHcCCCE
Q ss_pred hhcccCCCceeeeCCCCHhHHHHHHHHHHH
Q 018530 281 TNWASRPDLHCRVSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 281 ~~~~~~~~v~~~~~~~~~~~~~en~~~~~~ 310 (354)
+.....-+ .+.|+++.+-++.+++
T Consensus 160 i~l~DT~G------~~~P~~v~~lv~~l~~ 183 (268)
T cd07940 160 INIPDTVG------YLTPEEFGELIKKLKE 183 (268)
T ss_pred EEECCCCC------CCCHHHHHHHHHHHHH
No 222
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=28.11 E-value=3.1e+02 Score=27.91 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc
Q 018530 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 145 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki 192 (354)
+...+.+++.+++||++ .|.+.. .-++.-...+.+.+++|+++|.|
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~~-t~~~~~~~~v~~~~~~L~~kG~i 113 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFIR-TTDEEHKEIVQKIFQKLKENGYI 113 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCcc-CCCHHHHHHHHHHHHHHHHCCCE
Confidence 44678899999999997 475421 11111245678999999999998
No 223
>PRK10508 hypothetical protein; Provisional
Probab=27.82 E-value=83 Score=30.20 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV 187 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~ 187 (354)
.+++.+.+.|++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~-~~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI-FDHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC-CCHHHHHHHHHHHH
Confidence 5789999999999999998777 333322 34455555544443
No 224
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.81 E-value=6.7e+02 Score=25.63 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcC----------CccEEeccCCCHHHHHHHHHH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----------LVKAVGVSNYSEKRLRNAYEK 211 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~G----------kir~iGvSn~~~~~l~~~~~~ 211 (354)
++.+. +..+-+.|.++|+|+|.+-+ |.. ..+-.++++.+.+.+ ..+-.+++....+.++.+.+.
T Consensus 103 fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~--s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 103 LTPPQ-KLEIARQLAKLRVDIMEVGF---PGS--SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeC---CCC--CHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 45553 45566679999999888854 422 223344455554432 134456777777778887765
Q ss_pred HHhcCCC-eeee------ccccCcccCCcch-----hhHHHHHHHcCcEEEEcccCCCC
Q 018530 212 LKKRGIP-LASN------QVNYSLIYRKPEE-----NGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 212 ~~~~~~~-~~~~------Q~~~n~~~~~~~~-----~~l~~~~~~~gi~v~a~spl~~G 258 (354)
....+.+ +.+. ++.+++- ...++ .+.+++++++|+..+.+++-..+
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~-~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~ 234 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLK-KTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG 234 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCceEEecccccc
Confidence 3221221 1111 2222221 11111 25788999999865666654333
No 225
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.79 E-value=5.4e+02 Score=24.50 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC-CCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~-~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+. ++++.- -.++-|.-=.. ..++.+...+- -
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~-avr~~~----g~~~~l~vDan---~~~~~~~A~~~-~ 191 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVR-AIREAV----GYDVDLMLDCY---MSWNLNYAIKM-A 191 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHH-HHHHHh----CCCCcEEEECC---CCCCHHHHHHH-H
Confidence 355666777888999998754211111000 00001122332 333321 12333332221 23555543332 2
Q ss_pred HHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccC
Q 018530 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~ 231 (354)
+.|+. .|+.++-.|-+ .+-++.+.+|++...|. +.|=|.++...+.++++. -..+++|+..+-.--
T Consensus 192 ~~l~~-----~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GG 258 (341)
T cd03327 192 RALEK-----YELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGG 258 (341)
T ss_pred HHhhh-----cCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCC
Confidence 23333 35555555432 23467788888887775 666677888888887653 147888887654321
Q ss_pred CcchhhHHHHHHHcCcEEEEcc
Q 018530 232 KPEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~s 253 (354)
=.+...+.++|+++|+.++..+
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 1122358999999999987653
No 226
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.76 E-value=4.9e+02 Score=23.99 Aligned_cols=159 Identities=18% Similarity=0.121 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHH--HHHHHH-hccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~--lG~al~-~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
+...+.++..-+.|..|+..++.=+.... +.. ++..|+ +.+. +- |..... .+.++..+...|
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~------~~t~~~a~~l~~~~g~----~~--i~Hlt~---r~~n~~~l~~~L 79 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTR------DRTVRIVRRIKKETGI----PT--VPHLTC---IGATREEIREIL 79 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcH------HHHHHHHHHHHHhcCC----Ce--eEEeee---cCCCHHHHHHHH
Confidence 55556666666889999998775543222 333 334444 2231 11 222221 246777777777
Q ss_pred HHHHHhhCCCccceEEEcc-CC------C-CChHHHHHHHHHHHHcCCccEEeccCCCH---------HHHHHHHHHHHh
Q 018530 152 KDSLFRLGLSSVELYQLHW-AG------I-WGNEGFIDGLGDAVEQGLVKAVGVSNYSE---------KRLRNAYEKLKK 214 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~-p~------~-~~~~~~~~aL~~l~~~Gkir~iGvSn~~~---------~~l~~~~~~~~~ 214 (354)
... ..+|++ +++.|-. +. . .......+.++.+++..---.||+..+.. ..++.+.+..+
T Consensus 80 ~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~- 155 (272)
T TIGR00676 80 REY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVD- 155 (272)
T ss_pred HHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHH-
Confidence 744 777753 3333432 11 1 11123555555555542235788877522 34455544432
Q ss_pred cCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCC
Q 018530 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSP 260 (354)
Q Consensus 215 ~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 260 (354)
.|..+-+-|.-|++-. .. .+++.|++.|+.+ |+--|++
T Consensus 156 aGA~f~iTQ~~fd~~~---~~-~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 156 AGADYAITQLFFDNDD---YY-RFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred cCCCeEeeccccCHHH---HH-HHHHHHHHcCCCC----CEecccC
Confidence 3567888898887632 22 4888999998875 5555653
No 227
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.73 E-value=2.2e+02 Score=26.55 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeeeccccCcc---------c--CCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI---------Y--RKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 199 n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~---------~--~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
+.+.+...+.++.+.+.|++...+---+.-. . ....-.++++|++++||+|+.|.--..
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 3467788888888888888766664444310 1 111123799999999999998865543
No 228
>PRK09875 putative hydrolase; Provisional
Probab=27.68 E-value=5.2e+02 Score=24.28 Aligned_cols=29 Identities=3% Similarity=0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCC-eeecccccCCCCC
Q 018530 74 MKAAKAAFDTSLDNGIT-FFDTAEVYGSRAS 103 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin-~fDTA~~Yg~g~~ 103 (354)
.+.+.+-++.+.+.|++ .+|.. .+|-|+.
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd~T-~~g~GRd 62 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIEMT-NRYMGRN 62 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEecC-CCccCcC
Confidence 45566666667777776 66655 4556665
No 229
>PLN02321 2-isopropylmalate synthase
Probab=27.57 E-value=5.4e+02 Score=27.18 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccceEE-EccCCCCChHHHHHHHHHHHHcCC---------ccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 148 LAALKDSLFRLGLSSVELYQ-LHWAGIWGNEGFIDGLGDAVEQGL---------VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~~~aL~~l~~~Gk---------ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
+-.+-+.|.++|+|+|.+-+ ...|.+ ++++..+.+..+ .+-.+++.-+...++.+.+.......
T Consensus 110 Kl~Ia~~L~~lGVd~IEvGfP~~Sp~D------~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~ 183 (632)
T PLN02321 110 KLDIARQLAKLGVDIIEAGFPIASPDD------LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKR 183 (632)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCCCccH------HHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCC
Q ss_pred CeeeeccccCcccCCcc-----------hhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhc-cc
Q 018530 218 PLASNQVNYSLIYRKPE-----------ENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNW-AS 285 (354)
Q Consensus 218 ~~~~~Q~~~n~~~~~~~-----------~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (354)
+-..+.+.-|.++.... -.+.+++++++|...+.|++-..+.-......+- ...+..- ..
T Consensus 184 ~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~--------~~~a~~aGa~ 255 (632)
T PLN02321 184 PRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRI--------LGEVIKAGAT 255 (632)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHH--------HHHHHHcCCC
Q ss_pred CCCceeeeCCCCHhHHHHHHHHHHH
Q 018530 286 RPDLHCRVSKKSPTTVEQNQGTRRE 310 (354)
Q Consensus 286 ~~~v~~~~~~~~~~~~~en~~~~~~ 310 (354)
.=.+.-.+..+.|.++.+.++.+.+
T Consensus 256 ~I~L~DTvG~~~P~~v~~li~~l~~ 280 (632)
T PLN02321 256 TLNIPDTVGYTLPSEFGQLIADIKA 280 (632)
T ss_pred EEEecccccCCCHHHHHHHHHHHHH
No 230
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=27.57 E-value=4.5e+02 Score=23.78 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHcCCccEEeccC-CCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEccc
Q 018530 176 NEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (354)
Q Consensus 176 ~~~~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~sp 254 (354)
.+++.++|..++ +..|.... .+..|..++-..++..|+.. |.|+.....+ +++...-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~-ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPE-ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHH-HHHHHHHHcCCeEEEEEE
Confidence 455566666665 44454433 24556666666676666532 3454433332 477777778877777777
Q ss_pred CCCCC
Q 018530 255 IAQDS 259 (354)
Q Consensus 255 l~~G~ 259 (354)
-+.|+
T Consensus 144 sa~gL 148 (223)
T COG2102 144 SAEGL 148 (223)
T ss_pred eccCC
Confidence 77665
No 231
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=27.44 E-value=20 Score=34.71 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.6
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| ..||++|+++++++
T Consensus 59 ~C~~C~~C~~~CP~~i~~~~~~~ 81 (388)
T COG0247 59 TCLACGACATACPSGIDIGDLIR 81 (388)
T ss_pred hCcCccchHhhCCCCCcHHHHHH
Confidence 68888889 77999999998764
No 232
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.33 E-value=50 Score=27.14 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred hhHHHHHHHcCcEEEEcccCC
Q 018530 236 NGVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 236 ~~l~~~~~~~gi~v~a~spl~ 256 (354)
.++++.|+++||.|++|-.+.
T Consensus 47 ge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHCCCEEEEEEeee
Confidence 369999999999999998887
No 233
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=27.32 E-value=5.2e+02 Score=24.13 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=82.6
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHH-HH
Q 018530 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD-SL 155 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~-SL 155 (354)
..++-....+.|+|..|....--. . .+.+|...-+.......+.+.++..++. .-
T Consensus 14 VA~Vt~~La~~g~NI~d~sq~~~~-------------------~-----~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~ 69 (280)
T TIGR00655 14 VAAISTFIAKHGANIISNDQHTDP-------------------E-----TGRFFMRVEFQLEGFRLEESSLLAAFKSALA 69 (280)
T ss_pred HHHHHHHHHHCCCCEEeeeEEEcC-------------------C-----CCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 344455567999999997765432 0 1233433333221123578888999988 88
Q ss_pred HhhCCCccceEEEccCCC--------CChHHHHHHHHHHHHcCCc--cE-EeccCCCHHHHHHHHHHHHhcCCCeeeecc
Q 018530 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (354)
Q Consensus 156 ~rLg~dyiDl~~lH~p~~--------~~~~~~~~aL~~l~~~Gki--r~-iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~ 224 (354)
+.+|++ +.+|..+. ......+++|.+..++|.+ .- .=+||+... .. .+++.++|+.....
T Consensus 70 ~~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~--~~---~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 70 EKFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDL--RS---LVERFGIPFHYIPA 140 (280)
T ss_pred HHhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhH--HH---HHHHhCCCEEEcCC
Confidence 888875 46665543 1245678888888888864 32 335777422 11 25556676654433
Q ss_pred ccCcccCCcchhhHHHHHHHcCcEEEEc
Q 018530 225 NYSLIYRKPEENGVKAACDELGITLIAY 252 (354)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (354)
.. .++...+..+++..++.++-++..
T Consensus 141 ~~--~~~~~~e~~~~~~l~~~~~Dlivl 166 (280)
T TIGR00655 141 TK--DNRVEHEKRQLELLKQYQVDLVVL 166 (280)
T ss_pred CC--cchhhhHHHHHHHHHHhCCCEEEE
Confidence 22 233333335888888887766543
No 234
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=27.21 E-value=5.3e+02 Score=24.22 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCC---CCC--CchHHHHHHHHHh---ccCCCCCceEEEEeccCCCC------
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS---FGA--INSETLLGRFIKE---RKQRDPEVEVTVATKFAALP------ 139 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~---~~~--~~sE~~lG~al~~---~~~~~~R~~v~I~TK~~~~~------ 139 (354)
++...++-+..+++|-+.+.|.....+... .|. ...+++...+++- ...+..+.+++|+.=+|+..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 455677777788999999998765433110 011 0124444444431 11000122588888888732
Q ss_pred ------CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHc--CCccEEeccCCC------HHHH
Q 018530 140 ------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS------EKRL 205 (354)
Q Consensus 140 ------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~--Gkir~iGvSn~~------~~~l 205 (354)
+..+.+.+.+......+.|--..+|++++--.. ...++..+++.+++. ++--.+.++--+ -..+
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~--~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~ 202 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIP--NLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPL 202 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccC--CHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCH
Confidence 124678888888888888855669999997542 355666666666655 554455554321 1335
Q ss_pred HHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHH-cCcEEEEcccCCCCCCCchhhhhhhhhccc-chhhhhhhc
Q 018530 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE-LGITLIAYCPIAQDSPIFAARLKTSCSHWK-VYTTESTNW 283 (354)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~-~gi~v~a~spl~~G~L~~~~~~~~~~~~~~-~~~~~~~~~ 283 (354)
+++.+.+... -.++++-+++. .+..-. .+++...+ .+..+++| |-+ |.......-......-. .......+|
T Consensus 203 ~~~~~~l~~~-~~~~~iGiNC~--~p~~~~-~~l~~~~~~~~~pl~~~-PNa-G~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (304)
T PRK09485 203 AEAAALLAAS-PQVVAVGVNCT--APELVT-AAIAALRAVTDKPLVVY-PNS-GEVYDAVTKTWHGPADDASLGELAPEW 276 (304)
T ss_pred HHHHHHHhcC-CCceEEEecCC--CHHHHH-HHHHHHHhccCCcEEEE-CCC-CCCCCCCCCcccCCCChHHHHHHHHHH
Confidence 5555554321 13667777775 322111 24443433 24455544 333 22211000000000000 122344577
Q ss_pred ccCCCceee--eCCCCHhHHHHHHHHH
Q 018530 284 ASRPDLHCR--VSKKSPTTVEQNQGTR 308 (354)
Q Consensus 284 ~~~~~v~~~--~~~~~~~~~~en~~~~ 308 (354)
... ++..+ -.+++|+|+++.-+.+
T Consensus 277 ~~~-G~~iiGGCCGttP~hI~al~~~l 302 (304)
T PRK09485 277 YAA-GARLIGGCCRTTPEDIAALAAAL 302 (304)
T ss_pred HHc-CCeEEeeCCCCCHHHHHHHHHHh
Confidence 543 44433 2377799988876654
No 235
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=27.16 E-value=5.5e+02 Score=24.37 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHH---
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~--- 148 (354)
.+.++..+.++.+.+.|++.|-.......... ...+-+.++...... -++. + +..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i~----~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHIH----I----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCcC----C----CCCCHHHHHHHh
Confidence 56688888899999999987765422111111 223333333332000 0111 1 112332221
Q ss_pred -------HHHHHHHHhhCCCccceE--E-E-----cc--CCCCChHHHHHHHHHHHHcCC-ccE---EeccCCCHHHHHH
Q 018530 149 -------AALKDSLFRLGLSSVELY--Q-L-----HW--AGIWGNEGFIDGLGDAVEQGL-VKA---VGVSNYSEKRLRN 207 (354)
Q Consensus 149 -------~~le~SL~rLg~dyiDl~--~-l-----H~--p~~~~~~~~~~aL~~l~~~Gk-ir~---iGvSn~~~~~l~~ 207 (354)
+..-+.|++.|++.++.. - + +. |...+.++.+++++.+++.|. +.. +|. ..+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344456677788877632 1 1 11 111346778999999999985 322 454 556666666
Q ss_pred HHHHHHhcC
Q 018530 208 AYEKLKKRG 216 (354)
Q Consensus 208 ~~~~~~~~~ 216 (354)
.+...+..+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 555555443
No 236
>COG0218 Predicted GTPase [General function prediction only]
Probab=26.90 E-value=4.5e+02 Score=23.33 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=82.3
Q ss_pred ccccceeecCCCCcccCceeecccccCCCCCCCCCCcchhhHHHHHHHHHHHHHC------CCCeeecccccCCCCCCCC
Q 018530 33 KTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN------GITFFDTAEVYGSRASFGA 106 (354)
Q Consensus 33 ~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~------Gin~fDTA~~Yg~g~~~~~ 106 (354)
++...+..+++.-.-|-.=|||-+... ..-.+....++...++. .+-.+|.-.. +
T Consensus 60 Tq~iNff~~~~~~~lVDlPGYGyAkv~-----------k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~--------~ 120 (200)
T COG0218 60 TQLINFFEVDDELRLVDLPGYGYAKVP-----------KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP--------P 120 (200)
T ss_pred cceeEEEEecCcEEEEeCCCcccccCC-----------HHHHHHHHHHHHHHHhhchhheEEEEEEECCCC--------C
Confidence 345566666552222344477765432 12345566677666653 4456774321 1
Q ss_pred CchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccce--EEEc-cCCCCChHHHHHHH
Q 018530 107 INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVEL--YQLH-WAGIWGNEGFIDGL 183 (354)
Q Consensus 107 ~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl--~~lH-~p~~~~~~~~~~aL 183 (354)
...++.+=++|...+ ..=++|.||. .........+.+....+.|+.+.-|- +.+. .....+.+++++.+
T Consensus 121 ~~~D~em~~~l~~~~----i~~~vv~tK~----DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i 192 (200)
T COG0218 121 KDLDREMIEFLLELG----IPVIVVLTKA----DKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKI 192 (200)
T ss_pred cHHHHHHHHHHHHcC----CCeEEEEEcc----ccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHH
Confidence 223777788999887 4678999999 56777888889999999998877775 3333 23335678888887
Q ss_pred HHHHHc
Q 018530 184 GDAVEQ 189 (354)
Q Consensus 184 ~~l~~~ 189 (354)
.+...+
T Consensus 193 ~~~~~~ 198 (200)
T COG0218 193 LEWLKE 198 (200)
T ss_pred HHHhhc
Confidence 776654
No 237
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=26.88 E-value=1.7e+02 Score=28.26 Aligned_cols=75 Identities=11% Similarity=-0.056 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 179 FIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 179 ~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
-++.+.+|++...+. +.|=|-++...+.++++. --.+++|+...-.--=.....+...|+++|+.++..+.+.+
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s 300 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEG 300 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhh
Confidence 366677777766554 667677777777776553 13567776655432111112478888999999876554444
Q ss_pred C
Q 018530 258 D 258 (354)
Q Consensus 258 G 258 (354)
+
T Consensus 301 ~ 301 (368)
T TIGR02534 301 P 301 (368)
T ss_pred H
Confidence 4
No 238
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.64 E-value=2.4e+02 Score=25.06 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHHHHHHHHhcCCCee
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~~~ 220 (354)
.+++...+.++ .|-+-|+..|.+=+ ...+..+.+++++++..=-.||.-+. ++++.+++.+. |.+|.
T Consensus 13 ~~~~~a~~ia~-al~~gGi~~iEit~-------~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fi 80 (201)
T PRK06015 13 DDVEHAVPLAR-ALAAGGLPAIEITL-------RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFI 80 (201)
T ss_pred CCHHHHHHHHH-HHHHCCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEE
Confidence 34555544444 45556765555433 12346666777766543345888876 77888887664 34554
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEE
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 251 (354)
+ +|... .+++++|+++||.++.
T Consensus 81 v-----SP~~~----~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 V-----SPGTT----QELLAAANDSDVPLLP 102 (201)
T ss_pred E-----CCCCC----HHHHHHHHHcCCCEeC
Confidence 3 33221 2599999999998875
No 239
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.60 E-value=3.8e+02 Score=28.52 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeeccc--ccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEe--ccCCCCCCCC--
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAE--VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--KFAALPWRLG-- 143 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~--~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~T--K~~~~~~~~~-- 143 (354)
.+.|.++..+.++...+.|+.-|=.+. +|-|... |..+++.+++.. .++-|++ ++++....+.
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~H------E~~v~eiire~~-----~~i~V~~shev~p~~~~~eR~ 202 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEH------ELRVAEIIREIG-----PDIPVSLSHEVSPEIGEYERA 202 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHH------HHHHHHHHHHhc-----CCceEEechhcchhcCcccch
Confidence 457889999999999999999776654 4555544 999999999986 3566666 7775211111
Q ss_pred ------------HHHHHHHHHHHHHhhCCCccceEEEccCC
Q 018530 144 ------------RQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (354)
Q Consensus 144 ------------~~~i~~~le~SL~rLg~dyiDl~~lH~p~ 172 (354)
-....++++..|+.-|.+ .+++++.+..
T Consensus 203 ~TavlnA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 203 NTAVLNAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred hhheeeeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 134566777777777765 5788887654
No 240
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.48 E-value=4.9e+02 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.7
Q ss_pred hHHHHHHHcCcEEEEcc
Q 018530 237 GVKAACDELGITLIAYC 253 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~s 253 (354)
..++.|++.|..++.+.
T Consensus 103 ~~i~~a~~lG~~~i~~~ 119 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLA 119 (283)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 47789999999988764
No 241
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=26.42 E-value=3.1e+02 Score=28.72 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEEcc-CCCCChHHHHHHHHHHHHcCCccEEecc-CCCHHHHHHHHHHHHhcCCCee
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~~~~~~~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~~ 220 (354)
+.+.++.. ..+|.|||=+.+... |...+.+.+...+.+....-.++.|||- |-+++.+.++.+. ..++
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld 81 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGID 81 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCC
Confidence 44545444 458999999876553 3334444423434433333357789995 7788888887664 4789
Q ss_pred eeccccC
Q 018530 221 SNQVNYS 227 (354)
Q Consensus 221 ~~Q~~~n 227 (354)
++|++-+
T Consensus 82 ~vQLHG~ 88 (610)
T PRK13803 82 FVQLHGA 88 (610)
T ss_pred EEEECCC
Confidence 9999864
No 242
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.36 E-value=4.8e+02 Score=23.46 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=35.4
Q ss_pred cEEeccC---CCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 193 KAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 193 r~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
..+|+++ .++.++.++.+.++..+++..+....++. .-+-..+++.|+.++...||+.+
T Consensus 173 ~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~~ 234 (256)
T PF01297_consen 173 GVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGGG 234 (256)
T ss_dssp EEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCST
T ss_pred eeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcCC
Confidence 3344444 36788888888888887776665444322 11344577888998888888433
No 243
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.35 E-value=2.5e+02 Score=24.77 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHHHHHHHHhcCCCeee
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~~~~ 221 (354)
+.+...+.+ +.|-.-|+..+.+ -+-. .+.++.++.++++--=-.||..+. +.++.+++++. |..|.+
T Consensus 18 ~~~~a~~~~-~al~~gGi~~iEi---T~~t----~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fiv 85 (196)
T PF01081_consen 18 DPEDAVPIA-EALIEGGIRAIEI---TLRT----PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIV 85 (196)
T ss_dssp SGGGHHHHH-HHHHHTT--EEEE---ETTS----TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEE
T ss_pred CHHHHHHHH-HHHHHCCCCEEEE---ecCC----ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEE
Confidence 445444333 3455556554443 2221 234455555554322245898886 78888888775 345554
Q ss_pred eccccCcccCCcchhhHHHHHHHcCcEEEE
Q 018530 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (354)
Q Consensus 222 ~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 251 (354)
+|. .. .+++++|+++||.++.
T Consensus 86 -----SP~---~~-~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 -----SPG---FD-PEVIEYAREYGIPYIP 106 (196)
T ss_dssp -----ESS------HHHHHHHHHHTSEEEE
T ss_pred -----CCC---CC-HHHHHHHHHcCCcccC
Confidence 232 11 2599999999999986
No 244
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.25 E-value=3.2e+02 Score=29.13 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHc--CCccEEeccCCCHHHHHHHHHHH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKL 212 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~--Gkir~iGvSn~~~~~l~~~~~~~ 212 (354)
.+-+.+++-++.....-....--+|+|+..+... ...+++|.+..++ +.+++|.++|.....+..+...+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 4556677766655443333345678888766543 3567788888887 88999999997666655555444
No 245
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.20 E-value=5.7e+02 Score=24.27 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=61.9
Q ss_pred HHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHH
Q 018530 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (354)
Q Consensus 77 ~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~ 156 (354)
-.+.+..+++.|-.++=...++|+ =++.|.++..... .+...-| ..+...+...+.+..+
T Consensus 111 g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~~-----~~~~~yr------p~~np~ld~~i~~~R~ 170 (308)
T COG1560 111 GLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQGP-----KVTAMYR------PPKNPLLDWLITRGRE 170 (308)
T ss_pred CHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhCC-----CeeEEec------CCCCHHHHHHHHHHHH
Confidence 456788888888888888888888 7888888887652 2222222 2455668888888999
Q ss_pred hhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEecc
Q 018530 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (354)
Q Consensus 157 rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvS 198 (354)
+.|...++- ..+-++.|.+..++|.+ +|+.
T Consensus 171 r~~~~~~~~----------~~~~ir~li~~Lk~G~~--v~~l 200 (308)
T COG1560 171 RFGGRLLPR----------KGEGIRQLIKALKQGEA--VGYL 200 (308)
T ss_pred hcCCcccCC----------CchhHHHHHHHHhcCCe--EEEe
Confidence 998776652 12556667777777754 3553
No 246
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=26.18 E-value=1.4e+02 Score=30.77 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC
Q 018530 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS 259 (354)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 259 (354)
..|++.++.+++.++|+.+.-+.|.. +.+.+-..+.++|+++|+.++....++.|-
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg 414 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKGG 414 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccCC
Confidence 55667777788888887776666654 333233358899999999998777776553
No 247
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=26.00 E-value=2.8e+02 Score=27.27 Aligned_cols=85 Identities=9% Similarity=-0.079 Sum_probs=55.8
Q ss_pred cceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHH
Q 018530 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (354)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~ 241 (354)
.++.++-.|-+ .+-++.+.+|++.-.|. +.|=|-++...+.++++. --.+++|+...-.--=.....+.++
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 35555555432 23367788888876665 677777888888888654 1378888766543211111258899
Q ss_pred HHHcCcEEEEcccC
Q 018530 242 CDELGITLIAYCPI 255 (354)
Q Consensus 242 ~~~~gi~v~a~spl 255 (354)
|+.+|+.++..+..
T Consensus 304 A~~~gi~~~~h~~~ 317 (404)
T PRK15072 304 AALYQVRTGSHGPT 317 (404)
T ss_pred HHHcCCceeeccCc
Confidence 99999999886543
No 248
>PRK10658 putative alpha-glucosidase; Provisional
Probab=25.78 E-value=3.2e+02 Score=29.03 Aligned_cols=90 Identities=14% Similarity=0.295 Sum_probs=57.3
Q ss_pred CccceEEEccCCCCChHHHHHHHHHHHHc---------CCccEEecc-CCCHHHHHHHHHHHHhcCCCeeeeccccCccc
Q 018530 161 SSVELYQLHWAGIWGNEGFIDGLGDAVEQ---------GLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (354)
Q Consensus 161 dyiDl~~lH~p~~~~~~~~~~aL~~l~~~---------Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~ 230 (354)
..||.|++..+++ .++++...+|.-. |.-..-+.. +++.+.+.++++..+..++|++++.+.+.-..
T Consensus 234 ~~ldyy~~~G~tp---~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPTP---KEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCCH---HHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 5799999998753 5566555554422 221111111 35667788888888889999998877643111
Q ss_pred C--------C----cchhhHHHHHHHcCcEEEEcc
Q 018530 231 R--------K----PEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 231 ~--------~----~~~~~l~~~~~~~gi~v~a~s 253 (354)
. + +.-.++++..+++|+.++.+-
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i 345 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWI 345 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEec
Confidence 0 0 111369999999999998773
No 249
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.72 E-value=6.1e+02 Score=24.46 Aligned_cols=91 Identities=10% Similarity=0.133 Sum_probs=60.8
Q ss_pred EEEccCCC------------CChHHHHHHHHHHHHc-CC---ccEEecc--CCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 166 ~~lH~p~~------------~~~~~~~~aL~~l~~~-Gk---ir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
+-||.|+. ++.+++++++.++.++ |+ ++++=+. |.+.+.++++.+.++..+ ..++-++||
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPyN 293 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPLN 293 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEccC
Confidence 67888875 2468899999987754 32 3354453 557788888888876543 567778888
Q ss_pred cccC---Ccch---hhHHHHHHHcCcEEEEcccCCCC
Q 018530 228 LIYR---KPEE---NGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 228 ~~~~---~~~~---~~l~~~~~~~gi~v~a~spl~~G 258 (354)
+... .+.. ....+..+++||.+......|.-
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~d 330 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKD 330 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcC
Confidence 7431 1111 13566778889999998887753
No 250
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=25.70 E-value=25 Score=32.15 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=17.0
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| .-||+||++...+.
T Consensus 204 ~C~~C~~C~~vCP~~I~~~~~I~ 226 (244)
T PRK12385 204 SCTFVGYCSEVCPKHVDPAAAIQ 226 (244)
T ss_pred hCcCcccccccCCCCCCHHHHHH
Confidence 57777779 56999999877654
No 251
>PRK09061 D-glutamate deacylase; Validated
Probab=25.64 E-value=7.2e+02 Score=25.26 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~ 153 (354)
.++..++++.|++.|+..|=+...|-.+.+ ...+-+.++... +-+..|..-...... .+......++++
T Consensus 168 l~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~ 236 (509)
T PRK09061 168 LAEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQE 236 (509)
T ss_pred HHHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHH
Confidence 355788899999999999987666754433 555666665554 345666666532110 112222233333
Q ss_pred HHH---hhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCC
Q 018530 154 SLF---RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (354)
Q Consensus 154 SL~---rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~ 201 (354)
.++ ..|. -+.+.|--.. ....+.++.+++++++|.--..-++-|.
T Consensus 237 ~i~lA~~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 237 LIAAAAETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHHhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 333 3343 3666664322 3457788999999999955445555444
No 252
>PRK14863 bifunctional regulator KidO; Provisional
Probab=25.63 E-value=41 Score=31.52 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCcchhhhcccc
Q 018530 303 QNQGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 303 en~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
+.+..+.++++++++|++|+||+|..
T Consensus 215 ~~~~~~~~~~~~~~~s~aqlalaw~l 240 (292)
T PRK14863 215 GRLSRVRRMIAEGRSDPLQAALGFAL 240 (292)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33455666777789999999999844
No 253
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=25.61 E-value=4.5e+02 Score=25.22 Aligned_cols=70 Identities=11% Similarity=-0.079 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHH
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~ 210 (354)
.+++.+...+..+-..+-+++++|-|=.+..... .+..+++++.++|.++|..-. =+++-++...+++.+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~ 216 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLED 216 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHh
Confidence 4678888888888888888998887766654333 458899999999999998642 456666666666544
No 254
>PRK05826 pyruvate kinase; Provisional
Probab=25.40 E-value=7.2e+02 Score=25.14 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHHHHHHHCCCCeeecccccCCCCCCCCCchHHH--HHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHH
Q 018530 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (354)
Q Consensus 78 ~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~--lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL 155 (354)
...++.+++.|+.++-.+..... |.. +-+.+...+ .+++.|..|+ -+++.+ +.+++.+
T Consensus 176 ~~~i~~ald~g~d~I~~sfV~sa---------edv~~l~~~l~~~~----~~~~~iiakI------Et~eav-~nldeI~ 235 (465)
T PRK05826 176 KADIKFAAEQGVDYIAVSFVRSA---------EDVEEARRLLREAG----CPHAKIIAKI------ERAEAV-DNIDEII 235 (465)
T ss_pred HHHHHHHHHCCCCEEEECCCCCH---------HHHHHHHHHHHHcC----CcCceEEEEE------cCHHHH-HhHHHHH
Confidence 44578899999999977665543 332 245555443 2279999999 355555 5677777
Q ss_pred HhhCCCccceEEEccCCC---CChHHHH----HHHHHHHHcCCc
Q 018530 156 FRLGLSSVELYQLHWAGI---WGNEGFI----DGLGDAVEQGLV 192 (354)
Q Consensus 156 ~rLg~dyiDl~~lH~p~~---~~~~~~~----~aL~~l~~~Gki 192 (354)
+- +|.+++-+-|- .+.+++. +.++..++.||.
T Consensus 236 ~~-----~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 236 EA-----SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred HH-----cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCC
Confidence 65 79999887554 3333333 334446677874
No 255
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=25.35 E-value=11 Score=30.11 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=10.8
Q ss_pred CC-ccCCCCccccccccc
Q 018530 334 RS-QKCRTGCRIRGCIGM 350 (354)
Q Consensus 334 ~~-~~c~~gi~i~~~~~~ 350 (354)
.| ..||.+++||+.+++
T Consensus 31 pC~~aCP~~~dip~~i~~ 48 (111)
T PF14691_consen 31 PCQAACPAHIDIPEYIRL 48 (111)
T ss_dssp HHHHTSTT---HHHHHHH
T ss_pred CcccCCCCCCcHHHHHHH
Confidence 35 469999999998875
No 256
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=25.24 E-value=5.2e+02 Score=25.05 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCC--
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP-- 218 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~-- 218 (354)
..+++.++.-+.+.|.+.|++--| ...+-+.|... -..|+.+|...++...++..+..++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~-----------A~~vA~~lv~a------d~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED-----------ARAVADVLVAA------DLRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH-----------HHHHHHHHHHH------HhcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 367899999999999999984321 12222222222 23578888888888887777766543
Q ss_pred --eeeeccccCcccCCcch-----------hhHHHHHHHcCcEEEEc
Q 018530 219 --LASNQVNYSLIYRKPEE-----------NGVKAACDELGITLIAY 252 (354)
Q Consensus 219 --~~~~Q~~~n~~~~~~~~-----------~~l~~~~~~~gi~v~a~ 252 (354)
|.+++.-=....-+... ..+++.|+++||++++-
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 34443222211111100 24788999999988864
No 257
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=25.20 E-value=3.6e+02 Score=24.91 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHH--CCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 018530 72 RKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~--~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~ 149 (354)
.++++..++++.|.+ .|+.-+-..+.| -....+.|+..+ -.++-|+|=++.+....+.+.-..
T Consensus 23 ~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----------v~~a~~~L~~~~----~~~vkv~tVigFP~G~~~t~~K~~ 87 (257)
T PRK05283 23 DTDEKVIALCHQAKTPVGNTAAICIYPRF-----------IPIARKTLREQG----TPEIRIATVTNFPHGNDDIDIALA 87 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECHHH-----------HHHHHHHhcccC----CCCCeEEEEecCCCCCCcHHHHHH
Confidence 456889999999999 577766665555 334455554321 015888888886544455565566
Q ss_pred HHHHHHHhhCCCccceEEEcc-CCCCChHHHHHHHHHHHHc---CC-ccEEe-ccCCCHHH-HHHHHHHHHhcCCCeeee
Q 018530 150 ALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQ---GL-VKAVG-VSNYSEKR-LRNAYEKLKKRGIPLASN 222 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~lH~-p~~~~~~~~~~aL~~l~~~---Gk-ir~iG-vSn~~~~~-l~~~~~~~~~~~~~~~~~ 222 (354)
..+..++ .|.|-||+++=-. .-.-+.+.+.+.+.+.++. |+ +|-|= .+-.+.++ +.++.+.+...|..|.=-
T Consensus 88 Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 88 ETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 6777776 4999999875321 1111233444455555542 33 33322 22234453 666666665555544444
Q ss_pred ccccCc
Q 018530 223 QVNYSL 228 (354)
Q Consensus 223 Q~~~n~ 228 (354)
-.-|..
T Consensus 167 STGf~~ 172 (257)
T PRK05283 167 STGKVP 172 (257)
T ss_pred CCCCCC
Confidence 444543
No 258
>PLN02389 biotin synthase
Probab=25.04 E-value=6.6e+02 Score=24.58 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=66.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeeeccccc-CCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHH
Q 018530 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVY-GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~fDTA~~Y-g~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
...+.++..+.++.+.+.|++.|--.... +.+.. + ..-+.+-+.++.... ..+.|....|. .+.+.+
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e--~-~~~e~i~eiir~ik~----~~l~i~~s~G~----l~~E~l- 181 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR--K-TNFNQILEYVKEIRG----MGMEVCCTLGM----LEKEQA- 181 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCC--h-hHHHHHHHHHHHHhc----CCcEEEECCCC----CCHHHH-
Confidence 34678999999999999999987543211 11100 0 012345555655531 23445444432 344432
Q ss_pred HHHHHHHHhhCCCccceEEEcc-CCC-------CChHHHHHHHHHHHHcCCcc----EEeccCCCHHHHHHHHHHHH
Q 018530 149 AALKDSLFRLGLSSVELYQLHW-AGI-------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLK 213 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~-p~~-------~~~~~~~~aL~~l~~~Gkir----~iGvSn~~~~~l~~~~~~~~ 213 (354)
+.|+..|+|.+-+-+ .. ++. ...++.++.++.+++.|.=- -+|+ +.+.+.+.+.+...+
T Consensus 182 ----~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gEt~edrv~~l~~Lr 252 (379)
T PLN02389 182 ----AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL-GEAEEDRVGLLHTLA 252 (379)
T ss_pred ----HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC-CCCHHHHHHHHHHHH
Confidence 344555776543311 10 100 23678899999999998521 1455 445544444444443
No 259
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=25.03 E-value=6.4e+02 Score=24.44 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=5.9
Q ss_pred HHHHHHHHHhcCC
Q 018530 205 LRNAYEKLKKRGI 217 (354)
Q Consensus 205 l~~~~~~~~~~~~ 217 (354)
++++.+.++..+.
T Consensus 155 l~~I~~la~~~g~ 167 (382)
T TIGR02080 155 IAKICHLAKAVGA 167 (382)
T ss_pred HHHHHHHHHHcCC
Confidence 3444444544444
No 260
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=24.92 E-value=2.9e+02 Score=28.32 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=57.1
Q ss_pred eeecccccCCCCCC-CCCchHH-----HHHHHHHhccCCCCCceEEEEeccCCC---------CCCCCH----HHHHHHH
Q 018530 91 FFDTAEVYGSRASF-GAINSET-----LLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAAL 151 (354)
Q Consensus 91 ~fDTA~~Yg~g~~~-~~~~sE~-----~lG~al~~~~~~~~R~~v~I~TK~~~~---------~~~~~~----~~i~~~l 151 (354)
+++|++-|-+|..+ |+. ... ++.++++..+ .+++..+-+-.. ....++ +...+.+
T Consensus 6 ~i~~~~py~ng~~HiGH~-~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 79 (556)
T PRK12268 6 LITSAWPYANGPLHLGHL-AGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEH 79 (556)
T ss_pred EEecCCCCCCCCcccccc-ccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 67788888776553 222 222 3444444332 355554443210 011233 3457788
Q ss_pred HHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc-cEEeccCC
Q 018530 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNY 200 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki-r~iGvSn~ 200 (354)
.+.+++||+++ |.+.-. .++.-.+.+.+.+.+|.++|.| +.-+--.|
T Consensus 80 ~~~~~~l~i~~-d~~~~t-~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~ 127 (556)
T PRK12268 80 KEDFKKLGISY-DLFTRT-TSPNHHEVVQEFFLKLYENGYIYKKTIEQAY 127 (556)
T ss_pred HHHHHHcCCcC-CCCcCC-CCHHHHHHHHHHHHHHHHCCCeEEeeeEEEe
Confidence 99999999974 754221 1111256788999999999987 33333334
No 261
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=24.86 E-value=25 Score=31.47 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=17.0
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
.|..|+.| .-||+||++.+++.
T Consensus 195 ~C~~Cg~C~~~CP~~I~~~~~I~ 217 (220)
T TIGR00384 195 RCTTCMNCSEVCPKGVNPARAIE 217 (220)
T ss_pred cCccccccccccCCCCCHHHHHH
Confidence 47777779 56999999877653
No 262
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.73 E-value=5.4e+02 Score=23.45 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCC-CC----CCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSR-AS----FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g-~~----~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~ 146 (354)
.+.++..++++...+.||..++.+..-+.+ .+ +.....++.+.+..+..+ ..++.+..-. .....+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~----~~~~~~~~~~----~~~~~~- 89 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK----QAKLGVLLLP----GIGTVD- 89 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc----CCEEEEEecC----CccCHH-
Confidence 345788889999999999999987210000 00 001112555655444432 2344322211 112233
Q ss_pred HHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEec---cCCCHHHHHHHHHHHHhcC
Q 018530 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRG 216 (354)
Q Consensus 147 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGv---Sn~~~~~l~~~~~~~~~~~ 216 (354)
.++..++ .|+|.+-++.--+ +...+.+..+.+++.|+--.+.+ +.++++.+.++.+.+...|
T Consensus 90 ---~i~~a~~-~g~~~iri~~~~s----~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G 154 (263)
T cd07943 90 ---DLKMAAD-LGVDVVRVATHCT----EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG 154 (263)
T ss_pred ---HHHHHHH-cCCCEEEEEechh----hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC
Confidence 3444443 3666655543221 23456677777788886444443 3356666666666555444
No 263
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=24.71 E-value=6.5e+02 Score=24.44 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.+.++..++++.+.+.|++.+-- .| |+. .. ..-+-+.++.......-..+.|+|-.. . +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEP--ll--r~dl~eli~~l~~~~gi~~i~itTNG~-----l----L~~~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEP--TL--RKDIEDICLQLSSLKGLKTLAMTTNGI-----T----LSRKL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCC--cc--hhhHHHHHHHHHhcCCCceEEEeeCcc-----h----HHHHH
Confidence 56788889999888999987753 34 321 00 111223333221100012466666431 1 11222
Q ss_pred HHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCC--c--cEEeccCCCHHHHHHHHHHHHhcCCC
Q 018530 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gk--i--r~iGvSn~~~~~l~~~~~~~~~~~~~ 218 (354)
..|+..|++.|-+ -|+..++ ...+.+++.++.+++.|+ | ..+-+-.++.+++.++.+.+...++
T Consensus 153 -~~L~~aGld~VnI-SLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLNI-SLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEEE-eeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 2445556554331 2233322 124789999999999985 2 2334456788889999988877654
Q ss_pred eeeeccccCccc
Q 018530 219 LASNQVNYSLIY 230 (354)
Q Consensus 219 ~~~~Q~~~n~~~ 230 (354)
.+.-++|.++.
T Consensus 230 -~vr~ie~mP~~ 240 (373)
T PLN02951 230 -NVRFIEFMPFD 240 (373)
T ss_pred -eEEEEEcccCC
Confidence 34444444443
No 264
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=24.66 E-value=7.1e+02 Score=24.83 Aligned_cols=102 Identities=23% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----ChHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----~~~~~~~aL~ 184 (354)
|+.|-++|++...+.+-+=++|.|-.-. ..-.+.+..-+++.-++++ +.++.++.|... +...++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 8888888887665432345677776632 2223333333333333444 578888887752 2233444544
Q ss_pred HHHH-------------cCCccEEeccCC--CHHHHHHHHHHHHhcCCCee
Q 018530 185 DAVE-------------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 185 ~l~~-------------~Gkir~iGvSn~--~~~~l~~~~~~~~~~~~~~~ 220 (354)
+... .+.|--||-.+. +.+.|.++ .+..|+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~l---L~~~Gl~v~ 227 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPL---LEKLGIRVL 227 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHH---HHHcCCeEE
Confidence 4331 356777885443 23455555 444565443
No 265
>PRK13753 dihydropteroate synthase; Provisional
Probab=24.52 E-value=5.9e+02 Score=23.84 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEE-EccCCC--CC----hHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhc
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WG----NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~--~~----~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 215 (354)
+.+.+.+..+.-+ .-|.|.||+=- -.+|.. .+ ..-+...++.+++.+. -|.|-++.++.++++++.
T Consensus 23 ~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~a---- 95 (279)
T PRK13753 23 DPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKR---- 95 (279)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHc----
Confidence 4555555555543 45788888844 334543 22 2234467777777753 489999999999988764
Q ss_pred CCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCC
Q 018530 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 216 ~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 256 (354)
|..+. | ..+-+. .+ .+.+.+.+.++.++.+-..+
T Consensus 96 GadiI-N--DVsg~~-d~---~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 96 GVGYL-N--DIQGFP-DP---ALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CCCEE-E--eCCCCC-ch---HHHHHHHHcCCCEEEEecCC
Confidence 44331 1 112222 21 48888999999888876544
No 266
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=24.49 E-value=80 Score=33.05 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc
Q 018530 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (354)
Q Consensus 151 le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir 193 (354)
.--.|+.||++ |++-+|+.++.+.+.+..+|+.|...|-+.
T Consensus 411 ~vL~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 411 AVLQLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 33458999998 999999999888889999999999877665
No 267
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.48 E-value=6.5e+02 Score=24.32 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=62.1
Q ss_pred Cccce-EEEccCCC------------CChHHHHHHHHHHH-HcCC---ccEEeccCC--CHHHHHHHHHHHHhcCCCeee
Q 018530 161 SSVEL-YQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 161 dyiDl-~~lH~p~~------------~~~~~~~~aL~~l~-~~Gk---ir~iGvSn~--~~~~l~~~~~~~~~~~~~~~~ 221 (354)
.++|| +-||.+++ .+.+++.+++.+.. +.|+ |+++=+-++ +.+.++++.+.++.......+
T Consensus 207 ~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~V 286 (348)
T PRK14467 207 PEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKV 286 (348)
T ss_pred cCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEE
Confidence 35566 45687765 12455666666554 4443 466656544 578888888877543223557
Q ss_pred eccccCcccCC----cchh---hHHHHHHHcCcEEEEcccCCCCCC
Q 018530 222 NQVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIAQDSP 260 (354)
Q Consensus 222 ~Q~~~n~~~~~----~~~~---~l~~~~~~~gi~v~a~spl~~G~L 260 (354)
+-++||++... +..+ .+.+..+++|+.+....+.|....
T Consensus 287 nLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~ 332 (348)
T PRK14467 287 NLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIF 332 (348)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchh
Confidence 77899976422 1111 355667788999999888876443
No 268
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.45 E-value=4.3e+02 Score=22.25 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCeeeeccccCcccCC-----cc---------hhhHHHHHHHcCcEEEEcccC
Q 018530 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRK-----PE---------ENGVKAACDELGITLIAYCPI 255 (354)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~-----~~---------~~~l~~~~~~~gi~v~a~spl 255 (354)
.++++.+.+++.++.+..+....+..... .. -...+++|++.|+..+...+-
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCc
Confidence 45555555666666544444433333211 00 024778888888877766544
No 269
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.38 E-value=3.2e+02 Score=24.28 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCC-CHHHHHHHHHHHHhcCCCee
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~~~~~~~~~~~ 220 (354)
.+++...+ +-+.|-+-|++.|.+=+ + ..+.++.+++++++..=-.||.-+. ++++.+++.+. |-+|.
T Consensus 17 ~~~e~a~~-~~~al~~~Gi~~iEit~-~------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fi 84 (204)
T TIGR01182 17 DDVDDALP-LAKALIEGGLRVLEVTL-R------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFI 84 (204)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEeC-C------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEE
Confidence 34554444 34456667776555533 2 2356677777776643356898876 78888887664 44554
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCch
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDSPIFA 263 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 263 (354)
+ +|.. . .+++++|+++||.++. |.++..
T Consensus 85 v-----sP~~---~-~~v~~~~~~~~i~~iP------G~~Tpt 112 (204)
T TIGR01182 85 V-----SPGL---T-PELAKHAQDHGIPIIP------GVATPS 112 (204)
T ss_pred E-----CCCC---C-HHHHHHHHHcCCcEEC------CCCCHH
Confidence 3 3322 1 2599999999998875 666643
No 270
>PRK14847 hypothetical protein; Provisional
Probab=24.38 E-value=5.4e+02 Score=24.79 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCC----ccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gk----ir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
++.+ =+-.+-+.|.+||+|.|.+ -.|.. .++-.++..++.+.++ ++-.+++....+.|+...+.....+.
T Consensus 51 fs~e-eKl~IA~~L~~lGVd~IEv---G~Pa~--s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 51 MDGA-RKLRLFEQLVAVGLKEIEV---AFPSA--SQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEe---eCCCC--CHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 3444 2455677799999877664 33321 2334677777777764 66777777778888888776543222
Q ss_pred CeeeeccccCcccC------Ccch-----hhHHHHHHHcCc---E---EEEcccCCCC
Q 018530 218 PLASNQVNYSLIYR------KPEE-----NGVKAACDELGI---T---LIAYCPIAQD 258 (354)
Q Consensus 218 ~~~~~Q~~~n~~~~------~~~~-----~~l~~~~~~~gi---~---v~a~spl~~G 258 (354)
....+-++-|.++. ..++ .+.+.++++++. + .+.|+|-...
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDas 182 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFS 182 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCC
Confidence 22222222232211 1111 146779999955 2 4777777543
No 271
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=24.28 E-value=28 Score=26.68 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=17.8
Q ss_pred hcccccccCCCC-ccCCCCcccccccccc
Q 018530 324 ISPGQCCANPRS-QKCRTGCRIRGCIGME 351 (354)
Q Consensus 324 law~~c~~~~~~-~~c~~gi~i~~~~~~~ 351 (354)
+.+.||+.|+.| .-||+ +.+.|+
T Consensus 63 idYdyCKGCGICa~vCP~-----kaI~Mv 86 (91)
T COG1144 63 IDYDYCKGCGICANVCPV-----KAIEMV 86 (91)
T ss_pred eEcccccCceechhhCCh-----hheEeE
Confidence 678899998888 66887 566654
No 272
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.27 E-value=5.1e+02 Score=23.02 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=42.6
Q ss_pred CccceEEEcc--CCC--------CChHHHHHHHHHHHHcCC---ccEEeccCC--CHHHHHHHHHHHHhcCCCeeeeccc
Q 018530 161 SSVELYQLHW--AGI--------WGNEGFIDGLGDAVEQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVN 225 (354)
Q Consensus 161 dyiDl~~lH~--p~~--------~~~~~~~~aL~~l~~~Gk---ir~iGvSn~--~~~~l~~~~~~~~~~~~~~~~~Q~~ 225 (354)
+++|++++.- .|+ .+++.+++.++.+.+.|+ ||..=|-++ +.+.++++.+.+...++. .+.-++
T Consensus 88 ~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llp 166 (213)
T PRK10076 88 KLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLP 166 (213)
T ss_pred HhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEec
Confidence 4677777642 121 246788899999999885 466666654 678888888877654432 233355
Q ss_pred cCc
Q 018530 226 YSL 228 (354)
Q Consensus 226 ~n~ 228 (354)
||.
T Consensus 167 yh~ 169 (213)
T PRK10076 167 FHQ 169 (213)
T ss_pred CCc
Confidence 554
No 273
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.22 E-value=7.5e+02 Score=24.99 Aligned_cols=46 Identities=7% Similarity=-0.009 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcC
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG 190 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~G 190 (354)
.+++.+.+.++...++.|+.++ .+...+. .+.+.+.+.++++++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 4778888899888888886543 3333322 23344556666666665
No 274
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.18 E-value=5.8e+02 Score=23.66 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHHHHH-CCCCeeecccccCC
Q 018530 70 DDRKMKAAKAAFDTSLD-NGITFFDTAEVYGS 100 (354)
Q Consensus 70 ~~~~~~~~~~~l~~A~~-~Gin~fDTA~~Yg~ 100 (354)
...|.+...+.++..++ .|++-|=..-..|.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE 50 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE 50 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccc
Confidence 35677889999999999 99987655554444
No 275
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=24.03 E-value=6.4e+02 Score=25.23 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCC---HHHHHHHHHHHHhc
Q 018530 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKR 215 (354)
Q Consensus 141 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~---~~~l~~~~~~~~~~ 215 (354)
.++++.+.+.+++..+.++ .++.+-+-.|.+ ...+.+++.|..++++..=..+.+++.. ++.++++.+.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~---- 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL---- 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----
Confidence 3678888888887776652 345566666443 2235678888888887211246776654 5666665442
Q ss_pred CCCeeeeccccCcccCCcc------------------h--------hhHHHHHHHcCcEEEEcccCCCCCC
Q 018530 216 GIPLASNQVNYSLIYRKPE------------------E--------NGVKAACDELGITLIAYCPIAQDSP 260 (354)
Q Consensus 216 ~~~~~~~Q~~~n~~~~~~~------------------~--------~~l~~~~~~~gi~v~a~spl~~G~L 260 (354)
.++.+.+.++-+++... . .+-++.+.+.|+.+....++-.|.-
T Consensus 133 --gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGiN 201 (442)
T TIGR01290 133 --GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGIN 201 (442)
T ss_pred --CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCcC
Confidence 23444444443332111 0 0124567788999888888877753
No 276
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.92 E-value=5e+02 Score=25.34 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=60.6
Q ss_pred EEEccCCC-------------CChHHHHHHHHH-HHHcC---CccEEecc--CCCHHHHHHHHHHHHhcCCCeeeecccc
Q 018530 166 YQLHWAGI-------------WGNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (354)
Q Consensus 166 ~~lH~p~~-------------~~~~~~~~aL~~-l~~~G---kir~iGvS--n~~~~~l~~~~~~~~~~~~~~~~~Q~~~ 226 (354)
+-||.+++ .+.+++++++.+ +.+.| +|+++=+. |.+.+.++++.+.++.. ...++-++|
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIpy 315 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLIDY 315 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEeee
Confidence 56787654 235788888875 44555 24555554 45667788888877543 456777888
Q ss_pred CcccCCcch-------hhHHHHHHHcCcEEEEcccCCCC
Q 018530 227 SLIYRKPEE-------NGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 227 n~~~~~~~~-------~~l~~~~~~~gi~v~a~spl~~G 258 (354)
|++...+.. ..+.+..+++|+.+......|.-
T Consensus 316 n~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 316 NSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTT 354 (368)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcc
Confidence 887553322 14667788999999998887753
No 277
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=23.83 E-value=7.8e+02 Score=25.01 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=11.2
Q ss_pred hHHHHHHHcCcEEEEcccCC
Q 018530 237 GVKAACDELGITLIAYCPIA 256 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~ 256 (354)
.+++..++++|.++-+.|..
T Consensus 411 ~Li~~IK~~~V~~IF~Epq~ 430 (479)
T TIGR03772 411 RLTRTIENLKVPAVFLEPNL 430 (479)
T ss_pred HHHHHHHHcCCCEEEEeCCC
Confidence 35555556666665555554
No 278
>PRK15108 biotin synthase; Provisional
Probab=23.74 E-value=6.4e+02 Score=24.19 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEc--cCCCCChHHHHHHHHHHHHcCCccEEeccC--CCHHHHHHHHHH-HHhcC
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYEK-LKKRG 216 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH--~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn--~~~~~l~~~~~~-~~~~~ 216 (354)
.+++.+.+.... ...+|...+-+ ... .|.....+.+.+.+..+++.|. .+.+|+ .+.+.++++.+. ++..+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 467777776654 45688887732 222 3322335666677777776664 243554 466777776543 11111
Q ss_pred CCeeeeccccCcc-cCCcch--hhHHHHHHHcCcEEEEcccCCC
Q 018530 217 IPLASNQVNYSLI-YRKPEE--NGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 217 ~~~~~~Q~~~n~~-~~~~~~--~~l~~~~~~~gi~v~a~spl~~ 257 (354)
+.++...-.|.-+ .....+ -+.++.+++.|+.+-+-..+|-
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 1122221122111 111111 1577788888886644334443
No 279
>PLN02428 lipoic acid synthase
Probab=23.72 E-value=6.8e+02 Score=24.27 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHCCCCeeeccc----ccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAE----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~----~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~ 148 (354)
+.++..++.+.+.+.|++++=-.. .|-++. -..+.+.++...... .++.|..=.. ....+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~p--df~~d----- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVP--DFRGD----- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCc--cccCC-----
Confidence 446666777788888987653321 232221 223445555443211 1233333111 01112
Q ss_pred HHHHHHHHhhCCCccceEEEccCCC------------CChHHHHHHHHHHHHc--CCc-cE---EeccCCCHHHHHHHHH
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLV-KA---VGVSNYSEKRLRNAYE 210 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~------------~~~~~~~~aL~~l~~~--Gki-r~---iGvSn~~~~~l~~~~~ 210 (354)
++.|+.|.-.-+|. +-|+++. ...++.++.|+.+++. |.. +. +|+ .=+.+.+.+.++
T Consensus 195 ---~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 22333332223566 3466553 1246788999999988 764 22 566 457788888887
Q ss_pred HHHhcCCCeeee-c--------cccCcccCCcchhhHHHHHHHcCcEEEEcccCCC
Q 018530 211 KLKKRGIPLASN-Q--------VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (354)
Q Consensus 211 ~~~~~~~~~~~~-Q--------~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 257 (354)
.+...++....+ | ++.+.+-...+...+-+++.+.|...++.+||-+
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 777666432221 2 2223232222333577888999999998888864
No 280
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.70 E-value=4.2e+02 Score=25.73 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
+.+++.+.++.+.+.|+..+..--.||- ...+.+.+.+.++
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl---------------------------------------pgqt~~~~~~~l~ 181 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL---------------------------------------PDQSLEEALDDLR 181 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHhhCCCccceEEEc-------------cCCCCChHHHHHHHHHHHHcCCccEEeccCC
Q 018530 153 DSLFRLGLSSVELYQLH-------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH-------------~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~ 200 (354)
..++ |+.|+|.+|.+- .|+.....+.++...+..++.--..+++|||
T Consensus 182 ~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~f 241 (378)
T PRK05660 182 QAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 (378)
T ss_pred HHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeecccc
No 281
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.67 E-value=5.5e+02 Score=23.22 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeeeeccc----cCcccCCcch--------hhHHHHHHHcCcEEEEc
Q 018530 199 NYSEKRLRNAYEKLKKRGIPLASNQVN----YSLIYRKPEE--------NGVKAACDELGITLIAY 252 (354)
Q Consensus 199 n~~~~~l~~~~~~~~~~~~~~~~~Q~~----~n~~~~~~~~--------~~l~~~~~~~gi~v~a~ 252 (354)
.|+...+.++.+.++..|+.+..+... |++...+.+. ...++.|++.|+.++..
T Consensus 48 ~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 48 DWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 455667788888888888876654332 2333333211 25788999999988875
No 282
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.51 E-value=5.7e+02 Score=23.29 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCccce-EEEccCCC------CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHh
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVEL-YQLHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl-~~lH~p~~------~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~ 214 (354)
.+.+.+.+..++.+ .-|-|+||+ ..--+|+. ...+.+...++.+++.-.+- |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHh---
Q ss_pred cCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCCC-----CCchhhhhhhhhcccchhhhhhhcccCCCc
Q 018530 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQDS-----PIFAARLKTSCSHWKVYTTESTNWASRPDL 289 (354)
Q Consensus 215 ~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 289 (354)
-.-+=+..+....+.+ +++.+++.|..++.+..-+.|. -...................+.+.--.+.-
T Consensus 96 ----g~~iINdis~~~~~~~---~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~ 168 (258)
T cd00423 96 ----GADIINDVSGGRGDPE---MAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPED 168 (258)
T ss_pred ----CCCEEEeCCCCCCChH---HHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHH
Q ss_pred eeeeCCCC-HhHHHHHHHHHHHHHH
Q 018530 290 HCRVSKKS-PTTVEQNQGTRRELQQ 313 (354)
Q Consensus 290 ~~~~~~~~-~~~~~en~~~~~~la~ 313 (354)
..+-++.. .....+|+.+++.+..
T Consensus 169 IilDPg~g~~k~~~~~~~~l~~i~~ 193 (258)
T cd00423 169 IILDPGIGFGKTEEHNLELLRRLDA 193 (258)
T ss_pred EEEeCCCCccCCHHHHHHHHHHHHH
No 283
>PRK06256 biotin synthase; Validated
Probab=23.50 E-value=6.3e+02 Score=23.83 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCee-ecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHH
Q 018530 71 DRKMKAAKAAFDTSLDNGITFF-DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (354)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~f-DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~ 149 (354)
..+.++..+.++.+.+.|++.| -.+..++.... --+.+-+.++.... +-.+.+.+-.+ ..+++.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~-----~~~~~~e~i~~i~~---~~~i~~~~~~g----~l~~e~l-- 155 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGK-----EVDQVVEAVKAIKE---ETDLEICACLG----LLTEEQA-- 155 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCch-----HHHHHHHHHHHHHh---cCCCcEEecCC----cCCHHHH--
Confidence 3577889999999999998633 22222222100 01234455554431 11233333332 2444433
Q ss_pred HHHHHHHhhCCCccceEEEccCCC---------CChHHHHHHHHHHHHcCCcc----EEeccCCCHHHHHHHHHHHHhc
Q 018530 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKR 215 (354)
Q Consensus 150 ~le~SL~rLg~dyiDl~~lH~p~~---------~~~~~~~~aL~~l~~~Gkir----~iGvSn~~~~~l~~~~~~~~~~ 215 (354)
+-|++.|++.+-+- +.. ++ ...++.+++++.+++.|.-- -+|+ +.+.+.+.+.+......
T Consensus 156 ---~~LkeaG~~~v~~~-lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l 228 (336)
T PRK06256 156 ---ERLKEAGVDRYNHN-LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKEL 228 (336)
T ss_pred ---HHHHHhCCCEEecC-Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhC
Confidence 34777787654331 111 11 13467778888888887521 1344 45666666666555443
No 284
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=23.49 E-value=7.7e+02 Score=24.83 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----ChHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----~~~~~~~aL~ 184 (354)
|+.|-++|.+...+.+-+=|+|.|-.-. ..-.+.+..-+++.-++++ +.++.++.+... +...++++|.
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~---~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVV---ALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChH---HHhccCHHHHHHHHHHhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 8888888877654332345667666532 1222333333333333444 678888877652 2333444443
Q ss_pred H-HH--------HcCCccEEeccCCCHHHHHHHHHHHHhcCCCee
Q 018530 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 185 ~-l~--------~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~ 220 (354)
+ +. +.+.|--||-.++.. .+.++.+..+..|+++.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~g-d~~elk~lL~~~Gl~v~ 221 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLAG-ELWQVKPLLDRLGIRVV 221 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCCC-CHHHHHHHHHHcCCeEE
Confidence 3 32 235678888666532 33333344444565543
No 285
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.43 E-value=6e+02 Score=24.64 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=87.5
Q ss_pred ccCceeecccccCCCC----C--CCCCCcchhhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhc
Q 018530 47 KVTKLGVGAWSWGDTS----Y--WNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER 120 (354)
Q Consensus 47 ~vs~lglG~~~~g~~~----~--~~~~~~~~~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~ 120 (354)
+|-.||||..+-|... . +..+.....|+++ +..+..-+.||+|+-++-.-.|. .++++..|+..
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~Ny--------k~vL~pll~~~ 84 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDNY--------KDVLKPLLKGV 84 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhhH--------HHHHHHHhhcC
Confidence 5667888876533211 0 1111122233333 44555568899999887644331 56677777665
Q ss_pred cCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CC-----hHHHHHHHHHHHHcCC---
Q 018530 121 KQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-----NEGFIDGLGDAVEQGL--- 191 (354)
Q Consensus 121 ~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~-----~~~~~~aL~~l~~~Gk--- 191 (354)
+ .+=|+..-. ++.+.- .|-+-++++|+=|||-..=-|+.+ ++ ....=-+|.+.+..-|
T Consensus 85 ~-----gqgf~vnLS----vd~~s~----Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~ 151 (481)
T COG5310 85 G-----GQGFCVNLS----VDTSSL----DLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRN 151 (481)
T ss_pred C-----CceEEEEeE----eccchh----HHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccC
Confidence 4 233333322 223322 345567889999999988888754 21 1222223444333333
Q ss_pred ---ccEEeccCCCHHHHH-----HHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEE
Q 018530 192 ---VKAVGVSNYSEKRLR-----NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (354)
Q Consensus 192 ---ir~iGvSn~~~~~l~-----~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 250 (354)
--++--+.-+|..+. .+.+.+...+..+.. -++.++++...++++.||..|
T Consensus 152 pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~e--------p~~ddr~gwAkLmkK~GVkgi 210 (481)
T COG5310 152 PGGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEE--------PAQDDREGWAKLMKKAGVKGI 210 (481)
T ss_pred CCCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccC--------CcchhhHHHHHHHHHcCCceE
Confidence 333333444553332 233444444433322 011222367788888887655
No 286
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=23.32 E-value=3.8e+02 Score=21.87 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=43.4
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCC----CccceEEEccCCC--CChHHHHHHHHHHHH
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~----dyiDl~~lH~p~~--~~~~~~~~aL~~l~~ 188 (354)
|=-+.|+-|+|. ...+..+++.|.++++.+.. ...|++++-.+.. .+..++.+.|..+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 667888889874 46778888888888876643 5579999998865 345566666665554
No 287
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.24 E-value=5.9e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHCCCCee
Q 018530 73 KMKAAKAAFDTSLDNGITFF 92 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~f 92 (354)
+.++..+.++.+.+.|++.|
T Consensus 63 ~~eei~~~~~~~~~~g~~~~ 82 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRF 82 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEE
Confidence 44666666777778898753
No 288
>PLN00191 enolase
Probab=23.01 E-value=7e+02 Score=25.15 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEecc--CCCHHHHHHHHHHHHhcCCCee
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS--NYSEKRLRNAYEKLKKRGIPLA 220 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvS--n~~~~~l~~~~~~~~~~~~~~~ 220 (354)
+++.+.+-+...+++ .++.++-.|-. ++-|+.+.+|.+..+|.-+|== ..++..+.++++.- -.+
T Consensus 296 s~~e~i~~~~~L~~~-----y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-----aad 362 (457)
T PLN00191 296 SGDELIDLYKEFVSD-----YPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-----ACN 362 (457)
T ss_pred CHHHHHHHHHHHhhc-----CCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-----CCC
Confidence 455444444444332 36677776643 2347778888888888777722 25678888876641 356
Q ss_pred eeccccCcccCCcchhhHHHHHHHcCcEEEEc
Q 018530 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (354)
Q Consensus 221 ~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~ 252 (354)
++++..|-.-.=.+..++.++|+++|+.++.-
T Consensus 363 ~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 363 ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 66666654332222235889999999999863
No 289
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=22.98 E-value=2e+02 Score=27.64 Aligned_cols=55 Identities=20% Similarity=0.369 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHcCC-ccEEeccCC------CHHHHHHHHHHHHhcCCCeeeeccccCccc
Q 018530 176 NEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (354)
Q Consensus 176 ~~~~~~aL~~l~~~Gk-ir~iGvSn~------~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~ 230 (354)
...+++.+++|+++|. |-.||+-+| +.+....+.......|+++.+-.+..+...
T Consensus 203 r~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 203 RNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEeeeeccC
Confidence 4567889999999999 999999766 345555555555555888888887777644
No 290
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=22.93 E-value=5.5e+02 Score=22.96 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.+.++..++++...+.|+..++...-=.....+-....++.+.+ +++.. +...+...++.+ .+ .+
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~-l~~~~---~~~~~~~l~~~~-------~~----~i 80 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRA-IRKLV---PNVKLQALVRNR-------EK----GI 80 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHH-HHhcc---CCcEEEEEccCc-------hh----hH
Confidence 35588999999999999999997532111000000112444433 33332 122333333321 22 22
Q ss_pred HHHHHhhCCCccceEEEccCC-------C---CChHHHHHHHHHHHHcCCccEEec---cC--CCHHHHHHHHHHHHhcC
Q 018530 152 KDSLFRLGLSSVELYQLHWAG-------I---WGNEGFIDGLGDAVEQGLVKAVGV---SN--YSEKRLRNAYEKLKKRG 216 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~-------~---~~~~~~~~aL~~l~~~Gkir~iGv---Sn--~~~~~l~~~~~~~~~~~ 216 (354)
+... ..|.+.|-++.--.+. . ...+.+.+.++.+++.|+--.+.+ +. ++++.+.++.+.+...+
T Consensus 81 ~~a~-~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 81 ERAL-EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred HHHH-hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 2222 2355554444421110 0 024556677777777776433333 44 66677777766666555
Q ss_pred C
Q 018530 217 I 217 (354)
Q Consensus 217 ~ 217 (354)
.
T Consensus 160 ~ 160 (265)
T cd03174 160 A 160 (265)
T ss_pred C
Confidence 4
No 291
>TIGR00035 asp_race aspartate racemase.
Probab=22.92 E-value=4.8e+02 Score=23.23 Aligned_cols=62 Identities=6% Similarity=-0.075 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHhhCCCccceEEEccCCCCC-------------hHHHHHHHHHHHHcCCccEEeccCCCHHHH
Q 018530 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (354)
Q Consensus 143 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-------------~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l 205 (354)
+-+.+++-++..-.+.+.++++.+.+++|+..+ ...+.+.++.|.+.| +.+|-++.++....
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 445667777777778899999999999986411 234556666666655 89999998877653
No 292
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=22.91 E-value=30 Score=31.86 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=17.8
Q ss_pred ccccCCCC-ccCCCCccccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIGM 350 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~~ 350 (354)
.|..|+.| .-||+||++-++.+|
T Consensus 213 ~C~~Cg~Cs~VCPk~I~~~~I~~l 236 (250)
T PRK07570 213 NCTNTGECEAVCPKGISLENIARM 236 (250)
T ss_pred cCcccCccccccCCCCCHHHHHHH
Confidence 47777779 559999998777765
No 293
>PRK13984 putative oxidoreductase; Provisional
Probab=22.69 E-value=30 Score=35.99 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.2
Q ss_pred ccccCCCC-ccCCCCcccccccc
Q 018530 328 QCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 328 ~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
-|..|+.| .-||.+++||+.++
T Consensus 186 ~C~~Cg~C~~~CP~~~~i~~~~~ 208 (604)
T PRK13984 186 RCVECGICTDTCPAHMDIPQYIK 208 (604)
T ss_pred hhcCCCcccccCCCCCCHHHHHH
Confidence 57778889 56999999998765
No 294
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=22.67 E-value=6.6e+02 Score=23.76 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCCeeecc---c-----ccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHH
Q 018530 74 MKAAKAAFDTSLDNGITFFDTA---E-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA---~-----~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~ 145 (354)
+++..+....+.+.|+..+|-- + .||.|.+ ...--+.+.+.++...... -.++-|+-|+... ++ +.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~--Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT--LLKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SGE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchH--hhcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cch
Confidence 3566666677788999999942 2 2444421 0011344555555442111 1246788887531 22 112
Q ss_pred HHHHHHHHHHHhhCCCccceEEEccCCC---CChH-HHHHHHHHHHHcCCccEEeccCC-CHHHHHHHHH
Q 018530 146 SVLAALKDSLFRLGLSSVELYQLHWAGI---WGNE-GFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (354)
Q Consensus 146 ~i~~~le~SL~rLg~dyiDl~~lH~p~~---~~~~-~~~~aL~~l~~~Gkir~iGvSn~-~~~~l~~~~~ 210 (354)
. ...+-+.|+..| +|.+.+|.-.. .... --|+...++++.-.|.-||.... +++..+++++
T Consensus 149 ~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 149 R-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred H-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHh
Confidence 2 235556677777 57777885322 1111 13777888888777888887776 6677776654
No 295
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=22.62 E-value=21 Score=38.17 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=15.2
Q ss_pred ccccccCCCC-ccCCCCcccccccc
Q 018530 326 PGQCCANPRS-QKCRTGCRIRGCIG 349 (354)
Q Consensus 326 w~~c~~~~~~-~~c~~gi~i~~~~~ 349 (354)
|..|..|+.| .-||.+|+|.+++.
T Consensus 436 ~d~C~~CG~C~evCP~gIpIvemI~ 460 (784)
T TIGR00314 436 EEQCYACGRCEQACPKNIPIISMIT 460 (784)
T ss_pred HhhhhhhhHHhccCCCCCCHHHHHH
Confidence 4466666666 45777777766654
No 296
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=3.1e+02 Score=23.38 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
+++...-.+++|-+.||.+|=.|..||.- -..+-+.+... =++++.|--... ...+...+...++
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~t--------A~k~lemveg~------lkvVvVthh~Gf-~e~g~~e~~~E~~ 76 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYT--------ALKALEMVEGD------LKVVVVTHHAGF-EEKGTQEMDEEVR 76 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHH--------HHHHHHhcccC------ceEEEEEeeccc-ccCCceecCHHHH
Confidence 34556667888889999999999999871 22222222211 145555543221 1233445677788
Q ss_pred HHHHhhCCC
Q 018530 153 DSLFRLGLS 161 (354)
Q Consensus 153 ~SL~rLg~d 161 (354)
+-|+..|.+
T Consensus 77 ~~L~erGa~ 85 (186)
T COG1751 77 KELKERGAK 85 (186)
T ss_pred HHHHHcCce
Confidence 889998863
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.61 E-value=3.5e+02 Score=26.17 Aligned_cols=78 Identities=13% Similarity=-0.043 Sum_probs=44.8
Q ss_pred cceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccC-CCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHH
Q 018530 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (354)
Q Consensus 163 iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn-~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~ 241 (354)
+|+.+.=-+ ...+-.+|.-|+..|.+-.+|+-. .....+....- -+.-.++.=|+.-...+..+++++
T Consensus 230 ~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~l-------i~~~~~i~GS~~g~~~d~~e~l~f 298 (339)
T COG1064 230 ADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLL-------ILKEISIVGSLVGTRADLEEALDF 298 (339)
T ss_pred CcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHh-------hhcCeEEEEEecCCHHHHHHHHHH
Confidence 676665544 245667788899999999999874 22111111100 011223333444444444579999
Q ss_pred HHHcCcEEEE
Q 018530 242 CDELGITLIA 251 (354)
Q Consensus 242 ~~~~gi~v~a 251 (354)
|.+++|....
T Consensus 299 ~~~g~Ikp~i 308 (339)
T COG1064 299 AAEGKIKPEI 308 (339)
T ss_pred HHhCCceeeE
Confidence 9999987654
No 298
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=22.56 E-value=6.8e+02 Score=23.86 Aligned_cols=139 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHC-CCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 74 ~~~~~~~l~~A~~~-Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
.++..++++...+. |++-+--+- |.... .....+.+.++.......-..+-|.|+. ....+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~----~~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRL----PVVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCC----CccCchhcCHHHH
Q ss_pred HHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEecc-----CCCHHHHHHHHHHHHhcCCCeeeec
Q 018530 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-----NYSEKRLRNAYEKLKKRGIPLASNQ 223 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvS-----n~~~~~l~~~~~~~~~~~~~~~~~Q 223 (354)
+.|++.|...+.+...-.+... .+++.++++.|++.|..-.+=.. |.+.+.+.++.+.+...|+.|-.++
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~Ei-~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~ 288 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCNEI-TEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLH 288 (331)
T ss_pred HHHHhcCCcEEEEccCCChHhC-CHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeec
No 299
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=22.49 E-value=3.9e+02 Score=28.27 Aligned_cols=98 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred eeecccccCCCCCC-CCCchHHHHHHHHHhccCCCCCceEEEEeccCCC---------CCCCCH----HHHHHHHHHHHH
Q 018530 91 FFDTAEVYGSRASF-GAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAALKDSLF 156 (354)
Q Consensus 91 ~fDTA~~Yg~g~~~-~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~---------~~~~~~----~~i~~~le~SL~ 156 (354)
++.|+.-|-+|..+ |+.. ..++...+.+..... -.+++..+-.-.+ ....++ +...+.+.+.++
T Consensus 5 ~itt~~py~ng~~HiGH~~-~~l~aDv~aR~~r~~-G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLV-EYIQADIWVRYQRMR-GHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred EEeCCCCCCCCcccccchH-HHHHHHHHHHHHHhc-CCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 67888888887664 3332 344444444322110 1345555433210 011233 346778899999
Q ss_pred hhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCc
Q 018530 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 157 rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gki 192 (354)
+||+++ |.+.-. -++.-.+.+.+.+.+|.++|.|
T Consensus 83 ~l~i~~-d~f~rt-t~~~h~~~v~~~~~~L~~~G~i 116 (673)
T PRK00133 83 GFGISF-DNYGST-HSEENRELAQEIYLKLKENGYI 116 (673)
T ss_pred HhCCCC-CCCccC-CcHHHHHHHHHHHHHHHHCCCE
Confidence 999984 743221 1111256788999999999987
No 300
>PF13289 SIR2_2: SIR2-like domain
Probab=22.41 E-value=3.1e+02 Score=21.73 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEE
Q 018530 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (354)
Q Consensus 177 ~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~ 250 (354)
...++.|..+.....+-.||.|--++ .+..++..+....-. .....|- +.+.........+.++.||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~--~~~~~~~-v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGK--SRPRHYI-VIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccC--CCccEEE-EEcCCchHHHHHHHHHcCCEEC
Confidence 45778888888888999999996665 444444333222111 0011111 1121111236788889998874
No 301
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=22.27 E-value=5.5e+02 Score=25.47 Aligned_cols=84 Identities=6% Similarity=-0.084 Sum_probs=53.0
Q ss_pred EEccCCCC-ChHHHHHHHHHHHHc------CCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHH
Q 018530 167 QLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (354)
Q Consensus 167 ~lH~p~~~-~~~~~~~aL~~l~~~------Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~ 239 (354)
++-.|-+. +.++.++.|.+|++. ..--..+=|.++.+.+.++++. --.+++|+..+-.--=.+...+.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHH
Confidence 55555431 223557777777765 3334556667778888877654 13677777766432212223589
Q ss_pred HHHHHcCcEEEEcccC
Q 018530 240 AACDELGITLIAYCPI 255 (354)
Q Consensus 240 ~~~~~~gi~v~a~spl 255 (354)
++|+++||.++.-+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999986554
No 302
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.26 E-value=5.5e+02 Score=22.69 Aligned_cols=75 Identities=25% Similarity=0.265 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhh---CCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCe
Q 018530 143 GRQSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (354)
Q Consensus 143 ~~~~i~~~le~SL~rL---g~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~ 219 (354)
-...+.+.+++.++++ |. .+++++..... +.....+.++.+..+ ++..|=+...+...+...++.+...++|+
T Consensus 13 ~~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~~--~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPv 88 (272)
T cd06300 13 WRAQMLDEFKAQAKELKKAGL-ISEFIVTSADG--DVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPV 88 (272)
T ss_pred HHHHHHHHHHHHHHhhhccCC-eeEEEEecCCC--CHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeE
Confidence 3456778888888888 63 24666654332 345566777777777 66666665554433333334444455654
Q ss_pred ee
Q 018530 220 AS 221 (354)
Q Consensus 220 ~~ 221 (354)
.+
T Consensus 89 v~ 90 (272)
T cd06300 89 VS 90 (272)
T ss_pred EE
Confidence 44
No 303
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=22.17 E-value=1.1e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEEcccCCCC
Q 018530 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 198 Sn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 258 (354)
|.++...+.++++. --.+++|+...-.--=.+...+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 34566666666553 13577777754432111122588999999999999886 443
No 304
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=22.02 E-value=9.4e+02 Score=25.80 Aligned_cols=149 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
+-+.++++++-+.|++.+- .|.. |..+----.+. ++-++..|. +.|-...-.+++.
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYse---------qD~~sMHRqKA------DEaY~iGk~------l~PV~AYL~idei 98 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSE---------QDRLSMHRQKA------DEAYLIGKG------LPPVGAYLAIDEI 98 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEec---------cchhhhhhhcc------ccceecccC------CCchhhhhhHHHH
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHH---HHHHHHHHhcCCCeeeeccccCcccC
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL---RNAYEKLKKRGIPLASNQVNYSLIYR 231 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l---~~~~~~~~~~~~~~~~~Q~~~n~~~~ 231 (354)
.+--.-..+|.+ .|.+-=..+--+.-+...+.| |++||=|---.+.+ ..+...+-..|++.. +..+
T Consensus 99 i~iak~~~vdav---HPGYGFLSErsdFA~av~~AG-i~fiGPspeVi~~mGDKv~AR~~Ai~agVpvV-------PGTp 167 (1176)
T KOG0369|consen 99 ISIAKKHNVDAV---HPGYGFLSERSDFAQAVQDAG-IRFIGPSPEVIDSMGDKVAARAIAIEAGVPVV-------PGTP 167 (1176)
T ss_pred HHHHHHcCCCee---cCCccccccchHHHHHHHhcC-ceEeCCCHHHHHHhhhHHHHHHHHHHcCCCcc-------CCCC
Q ss_pred Ccchh--hHHHHHHHcCcEEEEcccCCCC
Q 018530 232 KPEEN--GVKAACDELGITLIAYCPIAQD 258 (354)
Q Consensus 232 ~~~~~--~l~~~~~~~gi~v~a~spl~~G 258 (354)
.+.+. +.+++|++.|..||.-..+++|
T Consensus 168 gPitt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 168 GPITTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred CCcccHHHHHHHHHhcCCcEEEeecccCC
No 305
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.94 E-value=3.2e+02 Score=24.68 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=12.0
Q ss_pred CCceeeeCCCCHhHHHHHHHHHH
Q 018530 287 PDLHCRVSKKSPTTVEQNQGTRR 309 (354)
Q Consensus 287 ~~v~~~~~~~~~~~~~en~~~~~ 309 (354)
++=.++.-.+.+++.+|..+++-
T Consensus 168 dgD~vif~NFR~DRarql~~al~ 190 (223)
T PF06415_consen 168 DGDAVIFFNFRPDRARQLTRALT 190 (223)
T ss_dssp TT-EEEE--S-STTTHHHHHHHH
T ss_pred CCCEEEEEecChhHHHHHHHHHc
Confidence 34445555666777777776654
No 306
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=21.71 E-value=5.8e+02 Score=22.72 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.+.++..++.+.|.+.|+.-+=..+.| -....+.|+. .++-|+|=++.+......+.-...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 456889999999999998877665555 3344444532 4688888887644444444444555
Q ss_pred HHHHHhhCCCccceEEEccC-CCCChHHHHHHHHHHHHc--CCc-cE-EeccCCCHHHHHHHHHHHHhcCCCeeeeccc-
Q 018530 152 KDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GLV-KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p-~~~~~~~~~~aL~~l~~~--Gki-r~-iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~- 225 (354)
++.++ +|-|-||+++-... ..-....+.+.+.+.++. |+. +- +-.+-.+.+++.++.+.+...|. +++...
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA--DfvKTsT 153 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA--DFVKTST 153 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEeCC
Confidence 55554 79999999876542 112345566666666654 432 22 12222345666666666655543 444444
Q ss_pred -cCc
Q 018530 226 -YSL 228 (354)
Q Consensus 226 -~n~ 228 (354)
|..
T Consensus 154 Gf~~ 157 (211)
T TIGR00126 154 GFGA 157 (211)
T ss_pred CCCC
Confidence 553
No 307
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.48 E-value=5.2e+02 Score=27.01 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCccce---------EEEccCCCCChHHHHHHHHHHHHcCC-ccE---------EeccCCCHHHHHHH
Q 018530 148 LAALKDSLFRLGLSSVEL---------YQLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNA 208 (354)
Q Consensus 148 ~~~le~SL~rLg~dyiDl---------~~lH~p~~~~~~~~~~aL~~l~~~Gk-ir~---------iGvSn~~~~~l~~~ 208 (354)
...+-..|.++|.+.|++ +-....++ |+.|..+++... ++. +|.+++..+.++..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p------~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~ 102 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDP------WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERF 102 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCH------HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHH
Q ss_pred HHHHHhcCCCeeeeccccCcccCCcchhhHHHHHHHcCcEEEE
Q 018530 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (354)
Q Consensus 209 ~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~~~~gi~v~a 251 (354)
.+.+...|+...-+-...|-+..-.. .+++++++|..+.+
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 308
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.48 E-value=1.3e+02 Score=27.51 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=46.5
Q ss_pred hHHHHHHHcCcEEEEcccCCCCCCCchh-hhhhhhhcccchhhhhhhcccCCCceeeeCCC-C--HhHHHHHHHHHHHHH
Q 018530 237 GVKAACDELGITLIAYCPIAQDSPIFAA-RLKTSCSHWKVYTTESTNWASRPDLHCRVSKK-S--PTTVEQNQGTRRELQ 312 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~~G~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~~~~~en~~~~~~la 312 (354)
+++++|.+.||..+..-.|..--+.+++ ++..+..-...............++.+.+.|- + |+.+++.++-+++..
T Consensus 44 ~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T 123 (239)
T PRK14839 44 RVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAAT 123 (239)
T ss_pred HHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 5899999999887776666543333321 22222111111111111223334665544433 2 577887777777666
Q ss_pred HHhCCCcchhhhcc
Q 018530 313 QNFHTGRPQLAISP 326 (354)
Q Consensus 313 ~~~~~s~~qlAlaw 326 (354)
+...--.-.+|+++
T Consensus 124 ~~n~~~~Lnia~~Y 137 (239)
T PRK14839 124 AGGDRLHLRIAVDY 137 (239)
T ss_pred cCCCceEEEEEecC
Confidence 65554455555554
No 309
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.46 E-value=6.5e+02 Score=25.78 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred ecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCC-CccceEEEccC
Q 018530 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWA 171 (354)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~-dyiDl~~lH~p 171 (354)
+.+.+||. +..|-++|++.....+-+=|+|.|-+.. ..-.+.+..-+.+.-+.... +-+++.++|-|
T Consensus 119 E~~aVfGG---------~~~L~e~I~~~~~~y~P~~I~V~tTC~~---evIGDDi~a~i~~~~~~~~~p~~~pVi~v~Tp 186 (515)
T TIGR01286 119 EDAAVFGG---------LKNMVDGLQNCYALYKPKMIAVSTTCMA---EVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTP 186 (515)
T ss_pred CCceeeCc---------HHHHHHHHHHHHHhcCCCEEEEeCCcHH---HHhhccHHHHHHHHHHhcCCCCCCceEEeeCC
Confidence 33456776 7788888877654332345667776632 22334444444444444432 24689999998
Q ss_pred CCCC-----hHHHHHHHHHHH-----------HcCCccEEe-ccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 172 GIWG-----NEGFIDGLGDAV-----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 172 ~~~~-----~~~~~~aL~~l~-----------~~Gkir~iG-vSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
+... .+..++++.+.. ..++|--|| +..+ +..++++.+..+..|+++.+
T Consensus 187 gF~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 187 SFVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 8732 223333333221 135677774 4333 55555555556666765543
No 310
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=21.31 E-value=7.2e+02 Score=23.72 Aligned_cols=227 Identities=14% Similarity=0.064 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccC--CCCCceE-----EEEeccCCC--------
Q 018530 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ--RDPEVEV-----TVATKFAAL-------- 138 (354)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~--~~~R~~v-----~I~TK~~~~-------- 138 (354)
++...++-+..+++|.+.+-|...+..-.....-.+++..-+..+.... ...|+.+ +|+--+|++
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 5778888899999999999997655432110000012222222211110 0013333 344445441
Q ss_pred ------CCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC-CChHHHHHHHHHHHHcCCccEEeccCCC------HHHH
Q 018530 139 ------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRL 205 (354)
Q Consensus 139 ------~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~~~aL~~l~~~Gkir~iGvSn~~------~~~l 205 (354)
....+.+.+.+-..+.|+.+.-.-||++.+--... ...+.+++.|+++ .-.+=-+|+++..+ -+.+
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~~d~g~l~~G~t~ 210 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTIKDEGRLRSGETG 210 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEecCCCcccCCCcH
Confidence 11245566778888888887666699999886432 2223333444433 02223356665443 2455
Q ss_pred HHHHHHHHhcCCCeeeeccccCcccCCcchhhHHHHH-HHcCcEEEEcccCCCCCCCchhh-hhhh---hhcccchhhhh
Q 018530 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC-DELGITLIAYCPIAQDSPIFAAR-LKTS---CSHWKVYTTES 280 (354)
Q Consensus 206 ~~~~~~~~~~~~~~~~~Q~~~n~~~~~~~~~~l~~~~-~~~gi~v~a~spl~~G~L~~~~~-~~~~---~~~~~~~~~~~ 280 (354)
+++....++. ..+..+=+++..... ...-+.++. +-.++.++.| |.++........ .... ..+|..+.
T Consensus 211 e~~~~~~~~~-~~~~~IGvNC~~~~~--~~~~~~~L~~~~~~~~llvY-PNsGe~yd~~~g~~~~~~~~~~~~~~~~--- 283 (317)
T KOG1579|consen 211 EEAAQLLKDG-INLLGIGVNCVSPNF--VEPLLKELMAKLTKIPLLVY-PNSGEVYDNEKGGWIPTPFGLEPWQTYV--- 283 (317)
T ss_pred HHHHHHhccC-CceEEEEeccCCchh--ccHHHHHHhhccCCCeEEEe-cCCCCCCccccCcccCCCcccchHHHHH---
Confidence 6665544322 234444444433322 222244444 5557888887 676654432111 1111 11111111
Q ss_pred hhcccCCCceeee--CCCCHhHHHHHHHHHH
Q 018530 281 TNWASRPDLHCRV--SKKSPTTVEQNQGTRR 309 (354)
Q Consensus 281 ~~~~~~~~v~~~~--~~~~~~~~~en~~~~~ 309 (354)
-.|. +-++..+= .+++|.|+++.-+.++
T Consensus 284 ~~~~-~lGv~iIGGCCrt~P~~I~aI~e~v~ 313 (317)
T KOG1579|consen 284 KKAI-DLGVRIIGGCCRTTPKHIRAIAEAVK 313 (317)
T ss_pred HHHH-hcccceeCcccCCChHHHHHHHHHhh
Confidence 2332 22333332 2666889888776655
No 311
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.21 E-value=6.6e+02 Score=24.82 Aligned_cols=106 Identities=23% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCC-----ChHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-----~~~~~~~aL~ 184 (354)
|+.|-++|++...+.+-+-++|.|-... ..-.+.+..-+++. ++++ ++++.++.|+.. ..+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEGG---APIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhcC---CCEEEEECCCcCcccccHHHHHHHHHH
Confidence 7888888877554332345666666532 22233344444443 4443 688999988762 1333444444
Q ss_pred H-HH------HcCCccEEeccC-CC---HHHHHHHHHHHHhcCCCeeee
Q 018530 185 D-AV------EQGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (354)
Q Consensus 185 ~-l~------~~Gkir~iGvSn-~~---~~~l~~~~~~~~~~~~~~~~~ 222 (354)
+ +. +.+.|--||..+ .+ +..++++.+..+..|+++..+
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 3 22 234577888643 22 234455555556667665444
No 312
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=21.16 E-value=3.5e+02 Score=24.73 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCc
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLV 192 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gki 192 (354)
..++.+...+..+-..+-+++|+|-|=.+-.+.. .+..+++++-+.|+++|-+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 4678888888888889999999998877766554 4578999999999999965
No 313
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=21.15 E-value=2.8e+02 Score=21.96 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.0
Q ss_pred hHHHHHHHcCcEEEE
Q 018530 237 GVKAACDELGITLIA 251 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a 251 (354)
+++++|+++|+.++.
T Consensus 93 ~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 93 ELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 589999999999874
No 314
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=21.13 E-value=4.4e+02 Score=21.19 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=43.2
Q ss_pred CCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCC---ccceEEEccCCC--CChHHHHHHHHHHHHc
Q 018530 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (354)
Q Consensus 125 ~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~d---yiDl~~lH~p~~--~~~~~~~~aL~~l~~~ 189 (354)
+|=-+.|+-|+|. ...+..+++.|.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4778899999874 456777777777777776543 469999988764 3456666666666543
No 315
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=21.05 E-value=7.9e+02 Score=24.04 Aligned_cols=151 Identities=10% Similarity=-0.006 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHH-CCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHH
Q 018530 74 MKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (354)
Q Consensus 74 ~~~~~~~l~~A~~-~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le 152 (354)
.++..+.++.+++ .|++.|=.-. |.... ..-.+.+ +++++.. .++.|.--.. ..++++...+.+
T Consensus 169 ~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~---~~di~~v-~avRea~-----~~~~l~vDaN---~~w~~~~A~~~~- 233 (395)
T cd03323 169 PEGVVRLARAAIDRYGFKSFKLKG--GVLPG---EEEIEAV-KALAEAF-----PGARLRLDPN---GAWSLETAIRLA- 233 (395)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEec--CCCCH---HHHHHHH-HHHHHhC-----CCCcEEEeCC---CCcCHHHHHHHH-
Confidence 3555566666665 6999875421 21110 0001122 2333322 1233433332 235555433332
Q ss_pred HHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCcccC
Q 018530 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (354)
Q Consensus 153 ~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~~ 231 (354)
++|. - |+.++-.|-+ -++.|.+|++...+. +.|=|-++...+.++++. --.+++|....-.--
T Consensus 234 ---~~l~--~-~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GG 297 (395)
T cd03323 234 ---KELE--G-VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGG 297 (395)
T ss_pred ---HhcC--c-CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccC
Confidence 3342 2 6666665532 478888888887665 667677787777777653 137788877654321
Q ss_pred CcchhhHHHHHHHcCcEEEEcccC
Q 018530 232 KPEENGVKAACDELGITLIAYCPI 255 (354)
Q Consensus 232 ~~~~~~l~~~~~~~gi~v~a~spl 255 (354)
=.+...+.++|+++|+.+...+..
T Consensus 298 it~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 298 MRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCc
Confidence 112235899999999999987764
No 316
>PRK02399 hypothetical protein; Provisional
Probab=20.92 E-value=8.1e+02 Score=24.31 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCc
Q 018530 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (354)
Q Consensus 149 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~ 228 (354)
..++...++|.-.+.|.+-+|.-.. ==++||+|+++|.+. ||=..+...+...+-- |+
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~-----GGraME~Li~~G~~~--gVlDlTttEv~d~l~G----Gv----------- 256 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGT-----GGRAMEKLIDSGLIA--GVLDLTTTEVCDELFG----GV----------- 256 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC-----chHHHHHHHHcCCce--EEEEcchHHHHHHHhC----cC-----------
Confidence 4555555666555569999997543 236899999999884 6666665555443211 11
Q ss_pred ccCCcchhhHHHHHHHcCcEEEEcccCCCCCCCchhhhhhhhhcccchhhhhhhc-ccCCCceeeeCCCCHhHHHHHHHH
Q 018530 229 IYRKPEENGVKAACDELGITLIAYCPIAQDSPIFAARLKTSCSHWKVYTTESTNW-ASRPDLHCRVSKKSPTTVEQNQGT 307 (354)
Q Consensus 229 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~en~~~ 307 (354)
+...++ -+..+-+.||..+. ||=+--++.. .....++++|+. ..+ ..+|.+..+ .+ ..+||.++
T Consensus 257 ~sagp~---Rl~Aa~~~gIP~Vv-s~GalDmVnF-g~~~tvPe~f~~-----R~~~~HNp~vTlm--RT---t~eE~~~~ 321 (406)
T PRK02399 257 LAAGPD---RLEAAARTGIPQVV-SPGALDMVNF-GAPDTVPEKFRG-----RLLYKHNPQVTLM--RT---TPEENRQI 321 (406)
T ss_pred ccCCcc---HHHHHHHcCCCEEe-cCCceeeeec-CCcccccHhhcC-----CcceecCCcceee--ec---CHHHHHHH
Confidence 222332 57888899998763 3322222221 122223333311 123 334444433 22 34678888
Q ss_pred HHHHHHHhCCCcc
Q 018530 308 RRELQQNFHTGRP 320 (354)
Q Consensus 308 ~~~la~~~~~s~~ 320 (354)
-+.|+++++.+..
T Consensus 322 g~~ia~kLn~a~g 334 (406)
T PRK02399 322 GRWIAEKLNRAKG 334 (406)
T ss_pred HHHHHHHHhcCCC
Confidence 8888888775543
No 317
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.87 E-value=9e+02 Score=24.66 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhCCCccceEEEccCCCCC-----hHHHHHHHH
Q 018530 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (354)
Q Consensus 110 E~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-----~~~~~~aL~ 184 (354)
|+.|-++|++...+.+-+=|+|.|-+ ..+-+-..++...+.++.+ ++++.++.|.... .+.++.++.
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 77777888776543212334665554 3444555555555666643 6799999887621 222333322
Q ss_pred H-HH-----------HcCCccEEeccC---CCHHHHHHHHHHHHhcCCCeeeecc--------------ccCcccCCcch
Q 018530 185 D-AV-----------EQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEE 235 (354)
Q Consensus 185 ~-l~-----------~~Gkir~iGvSn---~~~~~l~~~~~~~~~~~~~~~~~Q~--------------~~n~~~~~~~~ 235 (354)
+ +. +.++|--||.++ +++..+.++.+..+..|+++.++-. .+|+.......
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g 221 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIG 221 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHH
Confidence 2 11 124577888765 2456666666666666765433321 22332111111
Q ss_pred hhHHHHH-HHcCcEEEEcccCC
Q 018530 236 NGVKAAC-DELGITLIAYCPIA 256 (354)
Q Consensus 236 ~~l~~~~-~~~gi~v~a~spl~ 256 (354)
..+-++. ++.|+.++...|++
T Consensus 222 ~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 222 ESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred HHHHHHHHHHhCCccccccccc
Confidence 1233433 35689888777766
No 318
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.64 E-value=6e+02 Score=22.51 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhCCCc--cceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCCCeee
Q 018530 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (354)
Q Consensus 144 ~~~i~~~le~SL~rLg~dy--iDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~~ 221 (354)
...+.+.+++.++++|..+ +++++.... .+.....+.++.+...+ +..|=+...+...+...++.+...++|+..
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 4567778888888886544 344443222 22333444455555543 566666655544444444444445565443
No 319
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.52 E-value=7.7e+02 Score=23.70 Aligned_cols=154 Identities=9% Similarity=-0.050 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHh-ccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~-~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
+.++..+.++.+.+.|++.|=.- .++...- ....+.+ +++++ .+ .++.|.-=.. ..++.+...+ +
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G-----~~~~l~vDan---~~~~~~~A~~-~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG-----PDMRLMHDGA---HWYSRADALR-L 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC-----CCCeEEEECC---CCcCHHHHHH-H
Confidence 34666777888899999988542 1211000 0002222 33333 22 2333332221 2345554332 2
Q ss_pred HHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCcc-EEeccCCC-HHHHHHHHHHHHhcCCCeeeeccccCcc
Q 018530 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir-~iGvSn~~-~~~l~~~~~~~~~~~~~~~~~Q~~~n~~ 229 (354)
-+.|+.+ ++.++-.|- +.. -++.+.+|+++-.|. +.|=+-++ +....++++.. -.+++|+..+..
T Consensus 209 ~~~l~~~-----~l~~iEeP~--~~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-----a~d~v~~d~~~~ 275 (368)
T cd03329 209 GRALEEL-----GFFWYEDPL--REA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-----ATDFLRADVNLV 275 (368)
T ss_pred HHHhhhc-----CCCeEeCCC--Cch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-----CCCEEecCcccc
Confidence 2334444 444444443 222 357788888876554 23334456 77777776541 478888877654
Q ss_pred cCCcchhhHHHHHHHcCcEEEEcc
Q 018530 230 YRKPEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~v~a~s 253 (354)
--=.+...+...|+++|+.++..+
T Consensus 276 GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 276 GGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEC
Confidence 221122258999999999997643
No 320
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=20.41 E-value=55 Score=30.01 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCcchhhhcccc
Q 018530 305 QGTRRELQQNFHTGRPQLAISPGQ 328 (354)
Q Consensus 305 ~~~~~~la~~~~~s~~qlAlaw~~ 328 (354)
...+..+++++++|++|+||+|..
T Consensus 222 ~~~~~~~~~~~~~s~~q~al~~~l 245 (285)
T cd06660 222 LEALKEIAEKHGVTPAQVALRWLL 245 (285)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 466888999999999999999866
No 321
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.41 E-value=1.4e+02 Score=27.07 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=41.7
Q ss_pred hHHHHHHHcCcEEEEcccCCCCCCCch-hhhhhhhhcccchhhhhhhcccCCCceeeeCCCC---HhHHHHHHHHHHHHH
Q 018530 237 GVKAACDELGITLIAYCPIAQDSPIFA-ARLKTSCSHWKVYTTESTNWASRPDLHCRVSKKS---PTTVEQNQGTRRELQ 312 (354)
Q Consensus 237 ~l~~~~~~~gi~v~a~spl~~G~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~en~~~~~~la 312 (354)
+++++|.+.||..+..-.|..--+.++ .++..+..-..........++...++.+.+.|-- |+.+++.++-+++..
T Consensus 38 ~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 38 NTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred HHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 488888888887776555554333321 1222221111111111122333445555544432 466666665555554
Q ss_pred HHhCCCcchhhhcc
Q 018530 313 QNFHTGRPQLAISP 326 (354)
Q Consensus 313 ~~~~~s~~qlAlaw 326 (354)
++...-.-.||+++
T Consensus 118 ~~~~~~~Lnia~~Y 131 (233)
T PRK14841 118 KEFDRMTLVIAFNY 131 (233)
T ss_pred cCCCCcEEEEEecC
Confidence 44433334444443
No 322
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=20.40 E-value=6.8e+02 Score=23.03 Aligned_cols=105 Identities=10% Similarity=-0.121 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCccceEEEccCCC--CChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHHHHhcCC
Q 018530 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (354)
Q Consensus 140 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~ 217 (354)
..++.+...+..+...+-+++++|-|=.+..+.. .++.+++++.++|.++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4678888888888888888999998887777665 46889999999999999763 45677777776666553
Q ss_pred CeeeeccccCcccCC--cchhhHHHHHHH-cCcEEEE
Q 018530 218 PLASNQVNYSLIYRK--PEENGVKAACDE-LGITLIA 251 (354)
Q Consensus 218 ~~~~~Q~~~n~~~~~--~~~~~l~~~~~~-~gi~v~a 251 (354)
.+++++..=++.-.+ ....+++....+ .++.|++
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 345553322222211 101235555555 4677664
No 323
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=20.39 E-value=2.5e+02 Score=28.27 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=41.1
Q ss_pred HHhhCCCccceEEEc-cCCCCChHHHHHHHHHHHHcCCccEEecc-CCCHHHHHHHHHHHHhcCCCeeeeccccC
Q 018530 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (354)
Q Consensus 155 L~rLg~dyiDl~~lH-~p~~~~~~~~~~aL~~l~~~Gkir~iGvS-n~~~~~l~~~~~~~~~~~~~~~~~Q~~~n 227 (354)
...+|.|+|=+.+.. .|...+.+.+ ..+.+... ++.+||- |-+++.+.++.+. ..++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 355788888886433 3433443333 32322222 8899987 6788888887664 47899999874
No 324
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.27 E-value=3.5e+02 Score=29.37 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHc--CCccEEeccCCCHHHHHHHH
Q 018530 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAY 209 (354)
Q Consensus 142 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~--Gkir~iGvSn~~~~~l~~~~ 209 (354)
.+-+.+++-++..........--+|+|...+... .+.+++|.+..++ ..+++|-++|.....+..+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 3456677666654433222334678887666543 3567888777777 58999999997554444443
No 325
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=20.21 E-value=3.8e+02 Score=22.44 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred CceEEEEeccCCCCCCCCHHHHHHHHHHHHHhhC--CCccceEEEccCCC--CChHHHHHHHHHHHHc
Q 018530 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (354)
Q Consensus 126 R~~v~I~TK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~--~~~~~~~~aL~~l~~~ 189 (354)
|=-+.|+-|++. ....+..+++.+.++++.+. +.-.|++++-.+.. .+..++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 566777777742 23456666666666665442 23348888877654 4456677777777655
No 326
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.13 E-value=8.5e+02 Score=24.07 Aligned_cols=151 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHHHHH
Q 018530 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (354)
Q Consensus 75 ~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~le~S 154 (354)
++..+..+.+++.|++.|=.-- |.... ...+.+ +++++.- -.++.|.-=.. ..++.+...+.++ .
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~~~-~ 262 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEWVK-Q 262 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHHHH-H
Confidence 4555666777788998765321 11000 001222 2333321 12333333332 2355554433332 2
Q ss_pred HHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcC----CccEEeccCCCHHHHHHHHHHHHhcCCCeeeeccccCccc
Q 018530 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (354)
Q Consensus 155 L~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~G----kir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~Q~~~n~~~ 230 (354)
|+. .++.++-.|-+ .+-++.+.+|++.. .--+.|=|.++...+.++++. --.+++|+...-.-
T Consensus 263 L~~-----~~l~~iEEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~G 329 (415)
T cd03324 263 LAE-----FKPWWIEEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRLG 329 (415)
T ss_pred hhc-----cCCCEEECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCccccC
Confidence 333 35556665533 23456666676654 333455566788777777653 14788888766432
Q ss_pred CCcchhhHHHHHHHcCcEEEEcc
Q 018530 231 RKPEENGVKAACDELGITLIAYC 253 (354)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~v~a~s 253 (354)
-=.+...+.+.|+++|+.+...+
T Consensus 330 Git~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 330 GVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcC
Confidence 11122258899999999987753
No 327
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=20.07 E-value=37 Score=34.20 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred cccccCCCC-ccCC----CCcccccccccc-ccC
Q 018530 327 GQCCANPRS-QKCR----TGCRIRGCIGME-THR 354 (354)
Q Consensus 327 ~~c~~~~~~-~~c~----~gi~i~~~~~~~-~~~ 354 (354)
..|..|+.| ..|| .-|+.|+-|.=| +||
T Consensus 50 ~lCiGCGICvkkCPF~AI~IvnLP~eLe~e~vHR 83 (591)
T COG1245 50 ELCIGCGICVKKCPFDAISIVNLPEELEEEVVHR 83 (591)
T ss_pred hhhccchhhhccCCcceEEEecCchhhcccceee
Confidence 468888889 7799 567788877766 776
No 328
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.02 E-value=6.1e+02 Score=22.35 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeeecccccCCCCCCCCCchHHHHHHHHHhccCCCCCceEEEEeccCCCCCCCCHHHHHHHH
Q 018530 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (354)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~fDTA~~Yg~g~~~~~~~sE~~lG~al~~~~~~~~R~~v~I~TK~~~~~~~~~~~~i~~~l 151 (354)
.+.+++.++++.+++.|++.|.-...-.+ +++.|...-++++ .++.|-.-. -.+.++++.++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--------~~~~i~~l~~~~~-----~~~~iGaGT-----V~~~~~~~~a~ 80 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD--------PFDSIAALVKALG-----DRALIGAGT-----VLSPEQVDRLA 80 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc--------HHHHHHHHHHHcC-----CCcEEeEEe-----cCCHHHHHHHH
Confidence 45689999999999999999987642222 3666655555543 234443332 25666665554
Q ss_pred HHHHHhhCCCccceEEEccCCCCChHHHHHHHHHHHHcCCccEEeccCCCHHHHHHHHHH
Q 018530 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (354)
Q Consensus 152 e~SL~rLg~dyiDl~~lH~p~~~~~~~~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 211 (354)
+ .|.| ++|.|.. ..++ .+.....|..- +.+.+++.++.++.+.
T Consensus 81 ~-----aGA~-----fivsp~~--~~~v---~~~~~~~~~~~--~~G~~t~~E~~~A~~~ 123 (206)
T PRK09140 81 D-----AGGR-----LIVTPNT--DPEV---IRRAVALGMVV--MPGVATPTEAFAALRA 123 (206)
T ss_pred H-----cCCC-----EEECCCC--CHHH---HHHHHHCCCcE--EcccCCHHHHHHHHHc
Confidence 4 4543 4565542 2233 34455777754 4457888888877653
Done!