Query 018531
Match_columns 354
No_of_seqs 192 out of 402
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 1.3E-25 2.9E-30 167.3 6.8 51 112-162 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 9.8E-24 2.1E-28 208.3 6.7 65 14-79 232-296 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 1E-21 2.2E-26 148.3 6.2 56 17-72 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.0005 1.1E-08 49.1 5.3 48 19-70 1-48 (48)
5 smart00426 TEA TEA domain. 89.5 0.41 8.9E-06 38.5 3.3 18 21-38 5-22 (68)
6 PF15235 GRIN_C: G protein-reg 79.0 1.5 3.2E-05 39.5 2.3 19 134-152 71-89 (137)
7 PF14379 Myb_CC_LHEQLE: MYB-CC 68.5 14 0.00031 28.3 5.0 22 127-148 6-27 (51)
8 TIGR02894 DNA_bind_RsfA transc 59.7 70 0.0015 29.7 8.7 51 14-70 43-93 (161)
9 smart00501 BRIGHT BRIGHT, ARID 58.3 9.1 0.0002 30.7 2.6 47 24-71 32-85 (93)
10 PF01285 TEA: TEA/ATTS domain 52.5 13 0.00028 38.6 3.2 53 16-69 46-112 (431)
11 PF12776 Myb_DNA-bind_3: Myb/S 51.0 18 0.00039 28.3 3.1 52 21-72 1-64 (96)
12 smart00717 SANT SANT SWI3, AD 50.9 48 0.001 21.7 4.8 43 20-68 2-45 (49)
13 cd00167 SANT 'SWI3, ADA2, N-Co 45.1 76 0.0017 20.5 5.0 44 21-69 1-44 (45)
14 PF01519 DUF16: Protein of unk 36.5 2.2E+02 0.0047 24.8 7.6 21 137-157 70-90 (102)
15 KOG3841 TEF-1 and related tran 29.0 30 0.00064 36.3 1.5 57 17-75 74-147 (455)
16 PF07384 DUF1497: Protein of u 27.6 52 0.0011 25.7 2.2 21 21-41 37-57 (59)
17 cd07645 I-BAR_IMD_BAIAP2L1 Inv 22.3 4E+02 0.0087 26.1 7.6 70 112-184 63-141 (226)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=1.3e-25 Score=167.34 Aligned_cols=51 Identities=75% Similarity=1.067 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 018531 112 SLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLA 162 (354)
Q Consensus 112 ~~qI~EALrmQmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La 162 (354)
+++|+||||+||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=9.8e-24 Score=208.28 Aligned_cols=65 Identities=43% Similarity=0.751 Sum_probs=60.2
Q ss_pred cCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccccchhh
Q 018531 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQHVEA 79 (354)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~~~~~ 79 (354)
..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++....
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~r 296 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAR 296 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccch
Confidence 3689999999999999999999999 7999999999999999999999999999999998754433
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.85 E-value=1e-21 Score=148.32 Aligned_cols=56 Identities=57% Similarity=0.974 Sum_probs=54.5
Q ss_pred CCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhc
Q 018531 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72 (354)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~ 72 (354)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.34 E-value=0.0005 Score=49.10 Aligned_cols=48 Identities=29% Similarity=0.405 Sum_probs=41.2
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR 70 (354)
|..||++=+.+|++||.++|. . .-+.|-..|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 1 4789999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=89.47 E-value=0.41 Score=38.46 Aligned_cols=18 Identities=28% Similarity=0.702 Sum_probs=16.5
Q ss_pred cCChHHHHHHHHHHHHhC
Q 018531 21 KWTPELHQRFVDAVNHLG 38 (354)
Q Consensus 21 rWT~ELH~rFV~AV~qLG 38 (354)
+|.++|-..|++|+...-
T Consensus 5 vWp~~lE~Af~~aL~~~~ 22 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP 22 (68)
T ss_pred cCcHHHHHHHHHHHHHcC
Confidence 799999999999999775
No 6
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=78.98 E-value=1.5 Score=39.49 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 018531 134 EVQRHLQLRIEAQGKYLQS 152 (354)
Q Consensus 134 EVQRhLQLRIEAQGKYLQs 152 (354)
.||+||+++|+.|++.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999987754
No 7
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=68.51 E-value=14 Score=28.31 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 018531 127 RKLHEQIEVQRHLQLRIEAQGK 148 (354)
Q Consensus 127 rrLhEQLEVQRhLQLRIEAQGK 148 (354)
--|..|+||||+|.=.+|.|.+
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~ 27 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777644
No 8
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.74 E-value=70 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=38.3
Q ss_pred cCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (354)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR 70 (354)
|.....|||...+-.++.+||...- -.+-.++.. ...||+..|-+-||.|.
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 4578899999999999999998654 222222221 25699999999999885
No 9
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=58.34 E-value=9.1 Score=30.68 Aligned_cols=47 Identities=32% Similarity=0.510 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCC----chhHHhhhCCCCc---cHHhHHhhhhhhhh
Q 018531 24 PELHQRFVDAVNHLGGPDKAT----PKSLMRVMGIPGL---TLYHLKSHLQKYRL 71 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAt----PK~IL~lM~V~gL---T~~hVKSHLQKYRl 71 (354)
-+|+.-|. +|..+||.+..+ =+.|.+.||++.- ...++++|..||=+
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 36888887 699999976544 2568899998752 35678999998844
No 10
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=52.53 E-value=13 Score=38.60 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCCcccCChHHHHHHHHHHHHhCCCCCCCchhHH-hhhC----------C-CC--ccHHhHHhhhhhh
Q 018531 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLM-RVMG----------I-PG--LTLYHLKSHLQKY 69 (354)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL-~lM~----------V-~g--LT~~hVKSHLQKY 69 (354)
.+..-+|++++...|++|+...-=-.+++- .+. ++.| . .| =|+.+|.||+|..
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~-~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKL-SDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---H-HHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCccc-ccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 567889999999999999987631112221 111 1111 1 23 4778999999987
No 11
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=51.03 E-value=18 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred cCChHHHHHHHHHHHHh---CCC-CCCCch-----hHHhhhCC---CCccHHhHHhhhhhhhhc
Q 018531 21 KWTPELHQRFVDAVNHL---GGP-DKATPK-----SLMRVMGI---PGLTLYHLKSHLQKYRLG 72 (354)
Q Consensus 21 rWT~ELH~rFV~AV~qL---GG~-dkAtPK-----~IL~lM~V---~gLT~~hVKSHLQKYRl~ 72 (354)
+||++..+-||+.+-+. |.- .....| .|.+.|+- ..+|..+|++|+...|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999988644 433 233333 34555542 446889999998765544
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=50.94 E-value=48 Score=21.75 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=32.2
Q ss_pred ccCChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHhhhhh
Q 018531 20 LKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQK 68 (354)
Q Consensus 20 lrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~gLT~~hVKSHLQK 68 (354)
-.||++=...|+.+|.++| +. =+.|-..|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~----w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN----WEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC----HHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 33 355666654 6677777766554
No 13
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=45.13 E-value=76 Score=20.51 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=32.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
.||++=+..|+.++..+|- ..-+.|-+.|+ +=|...|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 22456666664 36777777776543
No 14
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.50 E-value=2.2e+02 Score=24.82 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 018531 137 RHLQLRIEAQGKYLQSVLKKA 157 (354)
Q Consensus 137 RhLQLRIEAQGKYLQsiLEKA 157 (354)
+.||.+|.+||+-|++|++.-
T Consensus 70 kel~~e~k~qgktL~~I~~~L 90 (102)
T PF01519_consen 70 KELQVEQKAQGKTLQLILKTL 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999843
No 15
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=29.00 E-value=30 Score=36.27 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCcccCChHHHHHHHHHHHHhCCCCCCCchhHHh--------------hhCC---CCccHHhHHhhhhhhhhcccc
Q 018531 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMR--------------VMGI---PGLTLYHLKSHLQKYRLGKSQ 75 (354)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~--------------lM~V---~gLT~~hVKSHLQKYRl~k~~ 75 (354)
-.--+|+++.-+.|.+|+.-.- .--+-|-||. .+.. +-=|+.+|.||.|..-..+.+
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3445899999999999998663 1122333332 1111 335788999999976544443
No 16
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=27.58 E-value=52 Score=25.69 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHhCCCC
Q 018531 21 KWTPELHQRFVDAVNHLGGPD 41 (354)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~d 41 (354)
++..|+|..|-+-|..|||.+
T Consensus 37 kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 37 KFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred HhhHHHHHHHHHHHHHhcccc
Confidence 578999999999999999854
No 17
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=22.27 E-value=4e+02 Score=26.11 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHH
Q 018531 112 SLQIAQALQVQMEVQRKLHEQIEV---------QRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLV 182 (354)
Q Consensus 112 ~~qI~EALrmQmEVQrrLhEQLEV---------QRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gieaakaeLseL~ 182 (354)
+..|.++|.-=-||+|+++.|||. =..|.-.+|..-||+...+.+=|.- |-.-..++|-+.++|--+-
T Consensus 63 SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E---~k~k~dsLeK~~seLKK~R 139 (226)
T cd07645 63 SKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTE---HKNKLDSLEKSQADLKKIR 139 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 456677776666899999998873 3478899999999999887764422 3344456777777776665
Q ss_pred Hh
Q 018531 183 SM 184 (354)
Q Consensus 183 s~ 184 (354)
-+
T Consensus 140 RK 141 (226)
T cd07645 140 RK 141 (226)
T ss_pred hc
Confidence 54
Done!