Query 018531
Match_columns 354
No_of_seqs 192 out of 402
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1.3E-29 4.6E-34 194.9 6.4 62 13-75 1-62 (64)
2 2cu7_A KIAA1915 protein; nucle 87.4 1.4 4.7E-05 33.0 6.1 53 15-73 5-57 (72)
3 2hzd_A Transcriptional enhance 86.6 0.53 1.8E-05 37.8 3.5 58 15-74 2-76 (82)
4 2yum_A ZZZ3 protein, zinc fing 86.2 1.2 3.9E-05 33.5 5.1 56 15-73 4-62 (75)
5 2yus_A SWI/SNF-related matrix- 84.2 0.73 2.5E-05 35.8 3.2 46 18-69 17-62 (79)
6 1x41_A Transcriptional adaptor 83.7 1.1 3.7E-05 32.6 3.8 52 14-71 3-55 (60)
7 2xag_B REST corepressor 1; ami 82.4 1.9 6.3E-05 44.0 6.1 56 15-76 376-431 (482)
8 2iw5_B Protein corest, REST co 81.6 2.2 7.6E-05 40.0 5.9 56 13-74 127-182 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 80.6 2.1 7.1E-05 32.9 4.5 51 16-72 5-58 (72)
10 2elk_A SPCC24B10.08C protein; 68.9 4.9 0.00017 29.0 3.7 47 19-70 9-56 (58)
11 3sjm_A Telomeric repeat-bindin 64.6 16 0.00055 27.0 5.9 52 12-66 4-55 (64)
12 2cqr_A RSGI RUH-043, DNAJ homo 62.7 19 0.00064 27.6 6.1 51 18-71 17-68 (73)
13 1ity_A TRF1; helix-turn-helix, 60.6 19 0.00065 26.4 5.6 51 15-69 6-57 (69)
14 2ba2_A D12_ORF131, hypothetica 59.6 32 0.0011 27.9 7.1 42 113-157 32-73 (85)
15 2d9a_A B-MYB, MYB-related prot 58.1 8.7 0.0003 27.4 3.3 51 14-69 3-53 (60)
16 1guu_A C-MYB, MYB proto-oncoge 53.9 29 0.001 23.8 5.4 46 19-69 3-48 (52)
17 3uun_A Dystrophin; triple heli 53.8 44 0.0015 25.1 6.9 55 129-183 38-92 (119)
18 3uul_A Utrophin; spectrin repe 51.0 59 0.002 24.5 7.2 55 130-184 39-93 (118)
19 2kes_A Synphilin-1; synphillin 50.7 14 0.00047 26.9 3.3 24 124-147 15-42 (48)
20 2yqk_A Arginine-glutamic acid 50.2 15 0.00052 27.0 3.6 47 15-66 5-51 (63)
21 1gvd_A MYB proto-oncogene prot 49.5 30 0.001 23.8 4.9 46 19-69 3-48 (52)
22 1wgx_A KIAA1903 protein; MYB D 48.9 24 0.00082 27.4 4.6 48 21-71 10-58 (73)
23 2cjj_A Radialis; plant develop 43.7 36 0.0012 27.2 5.1 50 19-71 8-58 (93)
24 2lm1_A Lysine-specific demethy 43.0 8.3 0.00029 30.7 1.3 48 24-72 44-97 (107)
25 2eqr_A N-COR1, N-COR, nuclear 42.9 21 0.00071 25.9 3.3 46 15-66 8-53 (61)
26 2dim_A Cell division cycle 5-l 40.8 73 0.0025 23.2 6.1 50 15-69 5-54 (70)
27 1c20_A DEAD ringer protein; DN 39.6 10 0.00035 31.3 1.3 48 24-72 52-106 (128)
28 2cxy_A BAF250B subunit, HBAF25 38.2 11 0.00037 31.1 1.3 48 24-72 51-104 (125)
29 2eqy_A RBP2 like, jumonji, at 38.0 12 0.00043 30.7 1.6 49 24-73 42-96 (122)
30 4eef_G F-HB80.4, designed hema 37.4 14 0.00047 29.2 1.6 49 16-67 17-66 (74)
31 2jrz_A Histone demethylase jar 36.9 12 0.00039 30.7 1.2 47 25-72 41-93 (117)
32 2li6_A SWI/SNF chromatin-remod 36.6 10 0.00036 30.8 0.9 48 24-74 49-100 (116)
33 2crg_A Metastasis associated p 36.0 33 0.0011 25.8 3.5 49 13-66 2-50 (70)
34 1ig6_A MRF-2, modulator recogn 33.4 9.8 0.00034 30.4 0.3 50 24-74 33-89 (107)
35 2jxj_A Histone demethylase jar 33.3 12 0.00041 29.2 0.7 46 25-71 37-88 (96)
36 1w0t_A Telomeric repeat bindin 29.7 1.4E+02 0.0047 20.6 5.9 48 19-69 2-49 (53)
37 2rq5_A Protein jumonji; develo 29.1 21 0.00071 29.8 1.5 48 25-73 43-97 (121)
38 2kk0_A AT-rich interactive dom 27.9 23 0.00078 30.1 1.6 48 24-72 64-118 (145)
39 1kkx_A Transcription regulator 27.8 21 0.00073 29.6 1.4 48 24-74 48-99 (123)
40 2aje_A Telomere repeat-binding 25.6 1.2E+02 0.0042 24.7 5.5 50 15-67 9-60 (105)
41 3ok8_A Brain-specific angiogen 24.3 1.2E+02 0.004 28.0 5.8 43 113-155 71-122 (222)
42 2din_A Cell division cycle 5-l 22.9 1.9E+02 0.0066 20.6 5.7 47 17-70 7-53 (66)
43 1gv2_A C-MYB, MYB proto-oncoge 22.3 1.4E+02 0.0046 23.1 5.0 44 18-69 3-49 (105)
44 2k9n_A MYB24; R2R3 domain, DNA 20.6 1.6E+02 0.0055 23.0 5.2 47 18-70 52-98 (107)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=1.3e-29 Score=194.89 Aligned_cols=62 Identities=42% Similarity=0.792 Sum_probs=58.9
Q ss_pred ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhcccc
Q 018531 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (354)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~ 75 (354)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...+
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999 799999999999999999999999999999998654
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.43 E-value=1.4 Score=33.04 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=42.0
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhcc
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGK 73 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k 73 (354)
+.-.+-.||+|=++.|++||..+|- .=..|-+. ++|=|-.+|+.|.++|-...
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 3456778999999999999999993 33556665 47899999999999885443
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.62 E-value=0.53 Score=37.81 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=37.2
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhh---h-C-----------C--CCccHHhHHhhhhhhhhccc
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV---M-G-----------I--PGLTLYHLKSHLQKYRLGKS 74 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l---M-~-----------V--~gLT~~hVKSHLQKYRl~k~ 74 (354)
|.+..-+|.++|-..|++|+...-=....+ -+|.. | | . +-=|+.+|.||||.-+..+.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 455677999999999999999775111222 22211 1 1 1 23477889999997765543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.21 E-value=1.2 Score=33.48 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=41.9
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCc---hhHHhhhCCCCccHHhHHhhhhhhhhcc
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATP---KSLMRVMGIPGLTLYHLKSHLQKYRLGK 73 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~gLT~~hVKSHLQKYRl~k 73 (354)
+...+-.||+|=+.+|++||..+| .+...| +.|-+.| +|=|-.+|+.|.++|-...
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 445566899999999999999999 222222 3444554 6899999999999996543
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=84.20 E-value=0.73 Score=35.84 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred CcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
.+-.||+|=+.+|++||..+|+- =+.|-+.|+ +=|..+++.|.++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence 36789999999999999999943 366777664 78999999999977
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=83.71 E-value=1.1 Score=32.59 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=40.7
Q ss_pred cCCCCcccCChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHhhhhhhhh
Q 018531 14 TDAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (354)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl 71 (354)
...-.|-.||+|=..+|++||..+| +- =+.|-+.| +|=|-.+++.|.++|-.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 3455667899999999999999999 32 35666666 67899999999888744
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=82.36 E-value=1.9 Score=44.00 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=45.5
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccccc
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQH 76 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~~~ 76 (354)
..+..-+||++=|..|++||.+.|- .=+.|-++++- =|..+|++|.++||......
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ld 431 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNID 431 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhChH
Confidence 3456789999999999999999983 35677777665 49999999999998876543
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=81.61 E-value=2.2 Score=39.98 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=45.8
Q ss_pred ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhhhccc
Q 018531 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (354)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYRl~k~ 74 (354)
.+..+..-+||+|=++.|++|+...|-- =..|-++ |++=|..+|++|..+||....
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 4556778899999999999999999922 4566666 578999999999999986644
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.61 E-value=2.1 Score=32.89 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCcccCChHHHHHHHHHHHHhCCCCCCCchh---HHhhhCCCCccHHhHHhhhhhhhhc
Q 018531 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKS---LMRVMGIPGLTLYHLKSHLQKYRLG 72 (354)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~gLT~~hVKSHLQKYRl~ 72 (354)
....-.||.|=+.+|+.|+..+++ -||.+ |-..| |=|..+|+.|.+++.-.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 344557999999999999999983 35654 55555 67999999998877544
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=68.87 E-value=4.9 Score=28.96 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred cccCChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR 70 (354)
+-.||++=..++++||...| +- =+.|-+.|+. |=|-.+++.|.++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45799999999999999999 32 3455555532 678888888888764
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=64.59 E-value=16 Score=27.01 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=35.5
Q ss_pred eccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhh
Q 018531 12 LSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (354)
Q Consensus 12 lst~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHL 66 (354)
+++....|-.||+|=-++++++|.+.|. . .=+.|.+.+++.|=|-.+++-+-
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHH
Confidence 3555667789999999999999999992 1 14567777777777777776443
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=62.73 E-value=19 Score=27.62 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=39.3
Q ss_pred CcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCccHHhHHhhhhhhhh
Q 018531 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQKYRL 71 (354)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~gLT~~hVKSHLQKYRl 71 (354)
.+-.||++=...|+.||..+|. -+|..--++= -|||=|-.+|+.|.+.+.-
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3446999999999999999982 3676554332 3589999999999987643
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=60.64 E-value=19 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCCCcccCChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
.++.|-.||+|=-...+++|..+| |- =+.|...|+..|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN----WSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC----HHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc----HHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 467888999999999999999999 32 3667777765477888888776655
No 14
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=59.63 E-value=32 Score=27.86 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018531 113 LQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKA 157 (354)
Q Consensus 113 ~qI~EALrmQmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKA 157 (354)
..|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--
T Consensus 32 ~kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 32 TVVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 346777777765445555565 888899999999999999843
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=58.09 E-value=8.7 Score=27.41 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=37.8
Q ss_pred cCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
.+...|-.||+|=.++++++|.++|. . .=..|-+.| +|=|-.+++.|..+|
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 44567889999999999999999992 1 124555554 677888888777765
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=53.94 E-value=29 Score=23.83 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.2
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
|-.||+|=..+++++|.++|. ..=+.|-+.| +|=|-.+++.|..+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 557999999999999999982 1235565554 577888888877765
No 17
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=53.84 E-value=44 Score=25.11 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHH
Q 018531 129 LHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVS 183 (354)
Q Consensus 129 LhEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gieaakaeLseL~s 183 (354)
+..|++-++.|+--|+++..-+.+|.+.|++-+.....++.....-+..+.+|..
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~ 92 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNS 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3445556677778888899999999999998876544444333334445555544
No 18
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.98 E-value=59 Score=24.48 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHHh
Q 018531 130 HEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 184 (354)
Q Consensus 130 hEQLEVQRhLQLRIEAQGKYLQsiLEKAqe~La~~~~~s~gieaakaeLseL~s~ 184 (354)
..|++-++.|+--|.++..-+..|.+.|++-+.....++.....-+..|.+|...
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNAR 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 3445556677778888999999999999887765444443333445556665554
No 19
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=50.74 E-value=14 Score=26.88 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhh
Q 018531 124 EVQRKLHEQ----IEVQRHLQLRIEAQG 147 (354)
Q Consensus 124 EVQrrLhEQ----LEVQRhLQLRIEAQG 147 (354)
.+-|.|+|| +.+|.+||.-+|+|.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778887 568999998888874
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.20 E-value=15 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhh
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHL 66 (354)
+...+-.||++=|..|.+|+...|= + =..|-+.| |+.=|..+|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 4455679999999999999999992 1 23333311 5667777776544
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=49.53 E-value=30 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=33.9
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
+-.||+|=..+++++|.+.|- . .=..|-+.| +|=|-.+++.|...|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 0 123454544 677888888877765
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.89 E-value=24 Score=27.40 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCccHHhHHhhhhhhhh
Q 018531 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQKYRL 71 (354)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~gLT~~hVKSHLQKYRl 71 (354)
.||.+=..+|..|+..++ +.+|-+--++- -|+|=|.+.|+.|......
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 599999999999999987 34787665443 4788999999988876633
No 23
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=43.67 E-value=36 Score=27.24 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCchhHHhh-hCCCCccHHhHHhhhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV-MGIPGLTLYHLKSHLQKYRL 71 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~gLT~~hVKSHLQKYRl 71 (354)
.-.||+|=...|+.|+..+|. -+|.+--++ --|||=|-.+|+.|...+.-
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~---~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDK---DTPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 447999999999999999982 256543222 12479999999999988743
No 24
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.04 E-value=8.3 Score=30.65 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHhhhhhhhhc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLG 72 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT--~~hVKSHLQKYRl~ 72 (354)
-+||.-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+.
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 478888865 789999876654 4678889987533 35678888887443
No 25
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.90 E-value=21 Score=25.92 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=34.1
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhh
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHL 66 (354)
.++..-.||++=|+.|++|+.+.|- + =..|-.. +|+=|..+|.-|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHHH
Confidence 3566789999999999999999982 1 2445444 5678888877553
No 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.79 E-value=73 Score=23.20 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
....|-.||+|=.++++++|..+|- ..=+.|-..|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 4556778999999999999999991 12356666664 77888888777766
No 27
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.58 E-value=10 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-c--HHhHHhhhhhhhhc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gL-T--~~hVKSHLQKYRl~ 72 (354)
-+||.-|.. |..+||.++.+- +.|.+.||++.- | .+.++.|..||=+.
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 368888865 789999876554 567888998752 2 46788888888544
No 28
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.24 E-value=11 Score=31.11 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHhhhhhhhhc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLG 72 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT--~~hVKSHLQKYRl~ 72 (354)
-+||.-|.. |..+||.++.+- +.|.+.||++.-| -..++.|..||=+.
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 367877754 889999876553 4678889998643 35678888777444
No 29
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.03 E-value=12 Score=30.75 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHhhhhhhhhcc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGK 73 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT--~~hVKSHLQKYRl~k 73 (354)
-+|+.-|.. |..+||.++.+- +.|.+.||++.-+ ...++.|..||=+..
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 367887754 889999876554 4678899986533 256888888885543
No 30
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.40 E-value=14 Score=29.21 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhC-CCCccHHhHHhhhh
Q 018531 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMG-IPGLTLYHLKSHLQ 67 (354)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~gLT~~hVKSHLQ 67 (354)
+-.--.||.+=.+.|..|+...+ +-||.+--++-. |||=|...|+.|.|
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 33345699999999999998875 457876544433 68999999999987
No 31
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.95 E-value=12 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHhhhhhhhhc
Q 018531 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLG 72 (354)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT--~~hVKSHLQKYRl~ 72 (354)
+|+.-|.. |..+||.++.+- +.|.+.||++.-| .+.++.|..||=+.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 67887754 789999876654 4678899987433 35688888888554
No 32
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=36.65 E-value=10 Score=30.83 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCccHHhHHhhhhhhhhccc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT~~hVKSHLQKYRl~k~ 74 (354)
-+|+.-|. +|..+||.++.+. +.|.+.||++. -..++.|..||=+...
T Consensus 49 lDL~~Ly~-~V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 49 INLFYLYM-LVQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYE 100 (116)
T ss_dssp CSTTHHHH-HHHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSHHH
T ss_pred ecHHHHHH-HHHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHHHH
Confidence 46777775 5899999877654 57789999987 6789999998865543
No 33
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=35.96 E-value=33 Score=25.80 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.0
Q ss_pred ccCCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhh
Q 018531 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (354)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHL 66 (354)
|+.++..-.||++=|..|.+|+...|= + =..|-+. -|++=|...|..+.
T Consensus 2 ~~~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 2 SSGSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CCcccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 345677789999999999999999992 2 2333331 16777887777665
No 34
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.43 E-value=9.8 Score=30.37 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCC-cc--HHhHHhhhhhhhhccc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPG-LT--LYHLKSHLQKYRLGKS 74 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~g-LT--~~hVKSHLQKYRl~k~ 74 (354)
-+|+.-|.. |..+||.++.+- +.|.+.||++. .| -..++.|..||=+...
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 468887754 789999877664 46788899865 22 2678898888855433
No 35
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.33 E-value=12 Score=29.17 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHhhhhhhhh
Q 018531 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRL 71 (354)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT--~~hVKSHLQKYRl 71 (354)
+|+.-|. +|..+||.++.+- +.|.+.|+++.-+ ...++.|..||=+
T Consensus 37 DL~~Ly~-~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 37 DLYALSK-IVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCHHHHH-HHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHH-HHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 5677775 5889999877654 4678889986432 3467777777743
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=29.67 E-value=1.4e+02 Score=20.57 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.6
Q ss_pred cccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhh
Q 018531 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 123567777764466777776655443
No 37
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.11 E-value=21 Score=29.80 Aligned_cols=48 Identities=27% Similarity=0.434 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc---HHhHHhhhhhhhhcc
Q 018531 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT---LYHLKSHLQKYRLGK 73 (354)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT---~~hVKSHLQKYRl~k 73 (354)
+|+.-| .+|..+||.++.|- +.|...||+|... .+.++.|..||=+..
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 566655 67888999877665 4677889987543 467888888886543
No 38
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.89 E-value=23 Score=30.06 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-c--HHhHHhhhhhhhhc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gL-T--~~hVKSHLQKYRl~ 72 (354)
-+|+..|.. |..+||.++.+- +.|.+.||++.- | .+.++.|..||=+.
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 367777755 789999876654 467889998762 1 36788888887443
No 39
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=27.81 E-value=21 Score=29.58 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCccHHhHHhhhhhhhhccc
Q 018531 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (354)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gLT~~hVKSHLQKYRl~k~ 74 (354)
-+|+.-|. +|..+||.++.+. +.|.+.|+++. -..++.|..||=+...
T Consensus 48 lDL~~Ly~-~V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 48 INLFYLYM-LVQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYE 99 (123)
T ss_dssp CCTTHHHH-HHTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred ecHHHHHH-HHHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHHHH
Confidence 35677665 5899999888775 56788999987 7788999988866543
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=25.56 E-value=1.2e+02 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=37.9
Q ss_pred CCCCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhC--CCCccHHhHHhhhh
Q 018531 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMG--IPGLTLYHLKSHLQ 67 (354)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~--V~gLT~~hVKSHLQ 67 (354)
.++.|-.||+|=-+..+++|..+|. . .=+.|++.+. .+|=|--++|-+-.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHH
Confidence 5788999999999999999999993 1 1356776552 37788888885544
No 41
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=24.30 E-value=1.2e+02 Score=28.00 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHH
Q 018531 113 LQIAQALQVQMEVQRKLHEQIEV---------QRHLQLRIEAQGKYLQSVLK 155 (354)
Q Consensus 113 ~qI~EALrmQmEVQrrLhEQLEV---------QRhLQLRIEAQGKYLQsiLE 155 (354)
-.|.+||.-=-|+||+|..+||. =.+|+.+||.-.||++....
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778886666899999999874 35799999999999986544
No 42
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.94 E-value=1.9e+02 Score=20.63 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=36.4
Q ss_pred CCcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (354)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR 70 (354)
-.+-.||+|=..+++++|..+|- .=..|-+++ |=|-.+++.|.+.|-
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l 53 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLL 53 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHh
Confidence 44567999999999999999983 235565644 578889999988774
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=22.28 E-value=1.4e+02 Score=23.06 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=0.0
Q ss_pred CcccCChHHHHHHHHHHHHhCCCCCCCch---hHHhhhCCCCccHHhHHhhhhhh
Q 018531 18 PRLKWTPELHQRFVDAVNHLGGPDKATPK---SLMRVMGIPGLTLYHLKSHLQKY 69 (354)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~gLT~~hVKSHLQKY 69 (354)
.+-.||+|=.++++++|...| ++ .|-..| +|=|..+++.|...|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g------~~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYG------PKRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC------TTCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhC------CCcHHHHhhhh--cCCCHHHHHHHHHhc
No 44
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=20.64 E-value=1.6e+02 Score=22.96 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=36.6
Q ss_pred CcccCChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHhhhhhhh
Q 018531 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (354)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVKSHLQKYR 70 (354)
.+-.||+|=...++++|..+|. .=..|-+.| ||=|-.+|+.|...+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 3568999999999999999993 134566655 7889999998876553
Done!