Query 018533
Match_columns 354
No_of_seqs 165 out of 832
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1k_A B3 domain-containing tr 100.0 6.2E-36 2.1E-40 254.3 16.5 133 214-347 13-145 (146)
2 1yel_A AT1G16640; CESG, protei 100.0 2.2E-28 7.6E-33 196.6 12.6 98 2-100 7-104 (104)
3 1yel_A AT1G16640; CESG, protei 99.9 4E-24 1.4E-28 171.7 11.5 99 243-345 4-102 (104)
4 1wid_A DNA-binding protein RAV 99.9 7.2E-21 2.5E-25 158.6 13.7 104 244-347 8-120 (130)
5 4i1k_A B3 domain-containing tr 99.8 2.9E-20 1E-24 157.7 13.9 96 2-98 45-143 (146)
6 1wid_A DNA-binding protein RAV 99.6 2.6E-14 9E-19 118.8 11.9 96 2-97 10-117 (130)
7 2glw_A PHS018, 92AA long hypot 59.5 49 0.0017 24.7 8.0 69 18-89 15-89 (92)
8 2cbp_A Cucumber basic protein; 50.5 7.8 0.00027 29.4 2.1 27 313-339 18-44 (96)
9 1x9u_A Umecyanin; cupredoxin, 46.3 7.4 0.00025 30.7 1.5 28 312-339 23-50 (116)
10 1yfb_A Transition state regula 44.1 44 0.0015 22.8 5.0 29 56-87 21-49 (59)
11 1oa8_A Ataxin-1; RNA binding, 43.0 5.1 0.00017 32.5 -0.0 24 304-327 91-124 (133)
12 2l66_A SSO7C4, transcriptional 42.2 25 0.00086 23.2 3.5 29 57-88 12-40 (53)
13 1ws8_A Mavicyanin; oxidized fo 37.1 21 0.00071 27.7 2.7 23 65-87 21-43 (109)
14 1f56_A Plantacyanin; cupredoxi 35.3 23 0.00078 26.4 2.6 28 312-339 12-39 (91)
15 1ws8_A Mavicyanin; oxidized fo 34.5 25 0.00085 27.2 2.8 28 312-339 23-50 (109)
16 1x9u_A Umecyanin; cupredoxin, 34.1 12 0.0004 29.5 0.8 21 67-87 23-43 (116)
17 1jer_A Cucumber stellacyanin; 25.1 22 0.00076 28.8 1.0 29 311-339 24-52 (138)
18 4e8b_A Ribosomal RNA small sub 23.8 1.7E+02 0.0058 25.8 6.7 53 1-56 1-58 (251)
19 3o27_A Putative uncharacterize 23.4 91 0.0031 21.9 3.7 25 262-286 24-48 (68)
20 3e0e_A Replication protein A; 21.5 1E+02 0.0035 22.8 4.1 19 308-327 54-72 (97)
No 1
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.2e-36 Score=254.33 Aligned_cols=133 Identities=81% Similarity=1.356 Sum_probs=114.1
Q ss_pred cccchhccccccccCCHHHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCceEEcCHHHHHhhCCCCCeeEEEEeCCCCeE
Q 018533 214 QFRFYESASARKRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYKGCIMYLPSCFAEKHLNGVCGFIKLQLSDGKQW 293 (354)
Q Consensus 214 ~~~~~~~~~~~~~~~t~~e~~~a~~~a~~~~s~~P~F~~~m~~s~v~~~~~L~iP~~f~~~~l~~~~~~i~L~~~~Gr~W 293 (354)
...||+++++++++||.+|+++|+++|++|+|++|+|+++|++|++++++.|.||++|+++|||....+|+|+++ |+.|
T Consensus 13 ~~~~~~~~~~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W 91 (146)
T 4i1k_A 13 RSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQW 91 (146)
T ss_dssp -------------CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEE
T ss_pred hhhhhhhhccCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEE
Confidence 346888999999999999999999999999999999999999999998888999999999999999999999999 5999
Q ss_pred EEEEEEeCCeeeecccHHHhhhhcCCCCCcEEEEEEecCceeEEEEEEEeecCC
Q 018533 294 PVRCLYRGGRAKFSQGWYEFTVENRLGEGDVCVFEVLRAREFVLKVTVFRVSES 347 (354)
Q Consensus 294 ~v~~~~~~~~~~l~~GW~~F~~~n~Lk~GD~cvFel~~~~~~~~~V~Ifr~~~~ 347 (354)
.|++.+.+++..|++||..||++|+|++||+|||||+++.+++|+|||||++|+
T Consensus 92 ~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~ 145 (146)
T 4i1k_A 92 PVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY 145 (146)
T ss_dssp EEEEEEETTEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred EEEEEEeCCcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccCC
Confidence 999988888999999999999999999999999999998788999999999986
No 2
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=2.2e-28 Score=196.62 Aligned_cols=98 Identities=23% Similarity=0.420 Sum_probs=93.5
Q ss_pred CCCeEEEeecccccccceeecchHHHHHhcCCCCCcEEEEcCCCCEEEEEEEEEcCeEEEcccHHHHHhHcCCCCCcEEE
Q 018533 2 PRPYFHKLILASTIRDKRLRIPENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLV 81 (354)
Q Consensus 2 ~~p~F~k~~~~~~~~~~~l~IP~~F~~~~~~~~~~~v~L~~~~G~~W~V~l~k~~~~~~~~~GW~~F~~~~~L~~gd~lv 81 (354)
.+|+|||+|+++.. ...|.||..|+++|.+.++.+|+|++++|++|+|.+.+.+++++|++||++||.+|+|++||+|+
T Consensus 7 ~~p~F~K~l~~~~~-~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~lv 85 (104)
T 1yel_A 7 GEVQFMKPFISEKS-SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQ 85 (104)
T ss_dssp CCEEEEEECCHHHH-TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEE
T ss_pred CCCCEEEEECCCCc-cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEEE
Confidence 47899999998863 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccceEEEEEEcCCCC
Q 018533 82 FRYEGNSAFNVYIFNLPSS 100 (354)
Q Consensus 82 F~~~g~s~F~V~if~~~~~ 100 (354)
|+|+|++.|.|+||+.++|
T Consensus 86 F~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 86 FIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp EEECSSSEEEEEEECSSCC
T ss_pred EEEcCCCeEEEEEECCCCC
Confidence 9999999999999999998
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.91 E-value=4e-24 Score=171.73 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=89.7
Q ss_pred cCCCCCeEEEEccCCCCCCCceEEcCHHHHHhhCCCCCeeEEEEeCCCCeEEEEEEEeCCeeeecccHHHhhhhcCCCCC
Q 018533 243 FEPSNPFCRVVLRPSYLYKGCIMYLPSCFAEKHLNGVCGFIKLQLSDGKQWPVRCLYRGGRAKFSQGWYEFTVENRLGEG 322 (354)
Q Consensus 243 ~~s~~P~F~~~m~~s~v~~~~~L~iP~~f~~~~l~~~~~~i~L~~~~Gr~W~v~~~~~~~~~~l~~GW~~F~~~n~Lk~G 322 (354)
..+++|.|.++|.+++. ...|.||.+|++.|++..+.+|+|++++|+.|.|++.+.+++..|++||++||++|+|++|
T Consensus 4 ~~~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~G 81 (104)
T 1yel_A 4 ADTGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDG 81 (104)
T ss_dssp CCCCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTT
T ss_pred CCCCCCCEEEEECCCCc--cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCC
Confidence 46789999999999873 3479999999999988888999999999999999998888899999999999999999999
Q ss_pred cEEEEEEecCceeEEEEEEEeec
Q 018533 323 DVCVFEVLRAREFVLKVTVFRVS 345 (354)
Q Consensus 323 D~cvFel~~~~~~~~~V~Ifr~~ 345 (354)
|+|+|+++++. .|+|+||+..
T Consensus 82 D~lvF~~~~~~--~f~V~If~~s 102 (104)
T 1yel_A 82 KYLQFIYDRDR--TFYVIIYGHN 102 (104)
T ss_dssp CEEEEEECSSS--EEEEEEECSS
T ss_pred CEEEEEEcCCC--eEEEEEECCC
Confidence 99999999764 6999999963
No 4
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.85 E-value=7.2e-21 Score=158.59 Aligned_cols=104 Identities=24% Similarity=0.348 Sum_probs=91.2
Q ss_pred CCCCCeEEEEccCCCCCCCceEEcCHHHHHhhCCCCC-------eeEEEEeCCCCeEEEEEEEeC--CeeeecccHHHhh
Q 018533 244 EPSNPFCRVVLRPSYLYKGCIMYLPSCFAEKHLNGVC-------GFIKLQLSDGKQWPVRCLYRG--GRAKFSQGWYEFT 314 (354)
Q Consensus 244 ~s~~P~F~~~m~~s~v~~~~~L~iP~~f~~~~l~~~~-------~~i~L~~~~Gr~W~v~~~~~~--~~~~l~~GW~~F~ 314 (354)
.+..|.|.++|++|+|...+.|.||++||++|||... ..|+|+|.+|+.|.+++.+++ .++.|++||..||
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV 87 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 87 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence 4778999999999999876789999999999998765 578999999999999998764 4688999999999
Q ss_pred hhcCCCCCcEEEEEEecCceeEEEEEEEeecCC
Q 018533 315 VENRLGEGDVCVFEVLRAREFVLKVTVFRVSES 347 (354)
Q Consensus 315 ~~n~Lk~GD~cvFel~~~~~~~~~V~Ifr~~~~ 347 (354)
++|+|++||+|+|+++.+.+..+.|.+.|....
T Consensus 88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~ 120 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120 (130)
T ss_dssp HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCC
Confidence 999999999999999986555688888888644
No 5
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.84 E-value=2.9e-20 Score=157.68 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=88.0
Q ss_pred CCCeEEEeecccccccc-eeecchHHHHHhcCCCCCcEEEEcCCCCEEEEEEEEEcCeEEEcccHHHHHhHcCCCCCcEE
Q 018533 2 PRPYFHKLILASTIRDK-RLRIPENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFL 80 (354)
Q Consensus 2 ~~p~F~k~~~~~~~~~~-~l~IP~~F~~~~~~~~~~~v~L~~~~G~~W~V~l~k~~~~~~~~~GW~~F~~~~~L~~gd~l 80 (354)
.+|+|+++|+++++... .|.||..|++.|.+....+|+|+++ |+.|.|.+...+++.+|++||.+||.+|+|++||+|
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~c 123 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVC 123 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEE
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEE
Confidence 47999999999998543 6999999999999988999999999 599999998888889999999999999999999999
Q ss_pred EEEEeccc--eEEEEEEcCC
Q 018533 81 VFRYEGNS--AFNVYIFNLP 98 (354)
Q Consensus 81 vF~~~g~s--~F~V~if~~~ 98 (354)
+|+|+++. .|.|+||+..
T Consensus 124 vFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 124 VFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp EEEECSSSSCEEEEEEECCC
T ss_pred EEEEecCCceEEEEEEEecc
Confidence 99999965 8999999765
No 6
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.56 E-value=2.6e-14 Score=118.80 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=79.8
Q ss_pred CCCeEEEeecccccc-cceeecchHHHHHhcCCCC-------CcEEEEcCCCCEEEEEEEEE--cCeEEEcccHHHHHhH
Q 018533 2 PRPYFHKLILASTIR-DKRLRIPENFVRNFKDDLS-------AAATLIVPNGMVSRVGLRRL--DNKVWFYDGWQEFMER 71 (354)
Q Consensus 2 ~~p~F~k~~~~~~~~-~~~l~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~V~l~k~--~~~~~~~~GW~~F~~~ 71 (354)
..|.|.|+|+++++. ...|.||..|++.|.+.+. ..++|+|+.|+.|.+.+... ....+|+.||..||++
T Consensus 10 ~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~ 89 (130)
T 1wid_A 10 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 89 (130)
T ss_dssp CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred CcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHH
Confidence 356899999999885 3689999999999887665 36889999999999998754 3567899999999999
Q ss_pred cCCCCCcEEEEEEecc--ceEEEEEEcC
Q 018533 72 YFIRIGYFLVFRYEGN--SAFNVYIFNL 97 (354)
Q Consensus 72 ~~L~~gd~lvF~~~g~--s~F~V~if~~ 97 (354)
|+|++||.|+|..+.+ ..+.|.+...
T Consensus 90 ~~L~~GD~~~F~~~~~~~~~l~I~~rr~ 117 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNGQDQQLYIGWKSR 117 (130)
T ss_dssp TTCCTTCEEEEEECCSSSCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCcEEEEEEEEC
Confidence 9999999999999864 4666666544
No 7
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=59.52 E-value=49 Score=24.71 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=48.9
Q ss_pred ceeecchHHHHHhcCCCCCcEEEEc---CCCC-EEEEEEEE--EcCeEEEcccHHHHHhHcCCCCCcEEEEEEeccce
Q 018533 18 KRLRIPENFVRNFKDDLSAAATLIV---PNGM-VSRVGLRR--LDNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSA 89 (354)
Q Consensus 18 ~~l~IP~~F~~~~~~~~~~~v~L~~---~~G~-~W~V~l~k--~~~~~~~~~GW~~F~~~~~L~~gd~lvF~~~g~s~ 89 (354)
..+.||..+-+.++-.....|.+.. .+|. .......+ ..|.+.+- ++..+..+|+.||.|.|...|...
T Consensus 15 gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd~l~~~~~~~~~ 89 (92)
T 2glw_A 15 GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGEVIEVLLLGHYK 89 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCCEEEEEEeCcEE
Confidence 6799999999999988777777632 3333 11111122 24677776 789999999999999998876543
No 8
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=50.50 E-value=7.8 Score=29.39 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=19.7
Q ss_pred hhhhcCCCCCcEEEEEEecCceeEEEE
Q 018533 313 FTVENRLGEGDVCVFEVLRAREFVLKV 339 (354)
Q Consensus 313 F~~~n~Lk~GD~cvFel~~~~~~~~~V 339 (354)
-+..+..++||.++|++.....-+++|
T Consensus 18 Wa~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred hccCceEcCCCEEEEEecCCCCEEEEE
Confidence 367789999999999997543334444
No 9
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=46.26 E-value=7.4 Score=30.65 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=20.2
Q ss_pred HhhhhcCCCCCcEEEEEEecCceeEEEE
Q 018533 312 EFTVENRLGEGDVCVFEVLRAREFVLKV 339 (354)
Q Consensus 312 ~F~~~n~Lk~GD~cvFel~~~~~~~~~V 339 (354)
.-+..+..++||+++|++.....-+++|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 4478889999999999997543234443
No 10
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=44.09 E-value=44 Score=22.81 Aligned_cols=29 Identities=14% Similarity=-0.075 Sum_probs=24.6
Q ss_pred cCeEEEcccHHHHHhHcCCCCCcEEEEEEecc
Q 018533 56 DNKVWFYDGWQEFMERYFIRIGYFLVFRYEGN 87 (354)
Q Consensus 56 ~~~~~~~~GW~~F~~~~~L~~gd~lvF~~~g~ 87 (354)
.|++.+- ++..+..+|+.||.|.|...++
T Consensus 21 kGqItIP---keiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 21 LGRVVIP---IELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp TCEEECC---HHHHHHTTCCTTCEEEEEEETT
T ss_pred CCEEEeC---HHHHHHcCCCCCCEEEEEEECC
Confidence 3666776 7889999999999999999876
No 11
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=43.02 E-value=5.1 Score=32.46 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=18.3
Q ss_pred eeecccHHHhhh----------hcCCCCCcEEEE
Q 018533 304 AKFSQGWYEFTV----------ENRLGEGDVCVF 327 (354)
Q Consensus 304 ~~l~~GW~~F~~----------~n~Lk~GD~cvF 327 (354)
++.+.||..|.= -..|++||+|+-
T Consensus 91 FV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVCls 124 (133)
T 1oa8_A 91 FVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCIS 124 (133)
T ss_dssp EETTTEEEESCHHHHHHHHCCCCEECCTTCEEEE
T ss_pred EEcCCcccccCHhHhhHhhCCcceecccCCEEEe
Confidence 346889987753 357899999986
No 12
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=42.24 E-value=25 Score=23.24 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=23.6
Q ss_pred CeEEEcccHHHHHhHcCCCCCcEEEEEEeccc
Q 018533 57 NKVWFYDGWQEFMERYFIRIGYFLVFRYEGNS 88 (354)
Q Consensus 57 ~~~~~~~GW~~F~~~~~L~~gd~lvF~~~g~s 88 (354)
+.+.+- +++.+..+|+.||.|.|...++.
T Consensus 12 gqi~IP---k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 12 YQVTIP---AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp SCBCCC---HHHHHHSCCCTTCEEEEEECSSS
T ss_pred CEEEeC---HHHHHHcCcCCCCEEEEEEECCE
Confidence 455555 67889999999999999988764
No 13
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=37.07 E-value=21 Score=27.68 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHHHhHcCCCCCcEEEEEEecc
Q 018533 65 WQEFMERYFIRIGYFLVFRYEGN 87 (354)
Q Consensus 65 W~~F~~~~~L~~gd~lvF~~~g~ 87 (354)
...-+....+..||.|+|+|...
T Consensus 21 Y~~Wa~~~~F~vGD~LvF~y~~~ 43 (109)
T 1ws8_A 21 YAKWASSNKFHVGDSLLFNYNNK 43 (109)
T ss_dssp HHHHHHTSCBCTTCEEEEECCTT
T ss_pred hhHhhcCCcCcCCCEEEEeecCC
Confidence 34557889999999999999854
No 14
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=35.28 E-value=23 Score=26.44 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=20.5
Q ss_pred HhhhhcCCCCCcEEEEEEecCceeEEEE
Q 018533 312 EFTVENRLGEGDVCVFEVLRAREFVLKV 339 (354)
Q Consensus 312 ~F~~~n~Lk~GD~cvFel~~~~~~~~~V 339 (354)
.-+..+..++||.++|.+.....-+++|
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp BSCTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCcCCccEeCCCEEEEEccCCCCeEEEE
Confidence 4577889999999999997543334444
No 15
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=34.53 E-value=25 Score=27.22 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=20.5
Q ss_pred HhhhhcCCCCCcEEEEEEecCceeEEEE
Q 018533 312 EFTVENRLGEGDVCVFEVLRAREFVLKV 339 (354)
Q Consensus 312 ~F~~~n~Lk~GD~cvFel~~~~~~~~~V 339 (354)
.-+..+..++||.++|.+.....-+++|
T Consensus 23 ~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 23 KWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred HhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 4578899999999999997543334444
No 16
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=34.12 E-value=12 Score=29.50 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.9
Q ss_pred HHHhHcCCCCCcEEEEEEecc
Q 018533 67 EFMERYFIRIGYFLVFRYEGN 87 (354)
Q Consensus 67 ~F~~~~~L~~gd~lvF~~~g~ 87 (354)
.-+.......||.|+|+|...
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~ 43 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAG 43 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTT
T ss_pred hccccccCcCCCEEEEEecCC
Confidence 457888999999999999853
No 17
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=25.12 E-value=22 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=20.4
Q ss_pred HHhhhhcCCCCCcEEEEEEecCceeEEEE
Q 018533 311 YEFTVENRLGEGDVCVFEVLRAREFVLKV 339 (354)
Q Consensus 311 ~~F~~~n~Lk~GD~cvFel~~~~~~~~~V 339 (354)
..-+..+..++||.++|.+.....-+++|
T Consensus 24 ~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 24 SQWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 34577889999999999997433223444
No 18
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=23.76 E-value=1.7e+02 Score=25.80 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCCCeEEEeeccccc-ccceeecchHHHHHhcC----CCCCcEEEEcCCCCEEEEEEEEEc
Q 018533 1 MPRPYFHKLILASTI-RDKRLRIPENFVRNFKD----DLSAAATLIVPNGMVSRVGLRRLD 56 (354)
Q Consensus 1 ~~~p~F~k~~~~~~~-~~~~l~IP~~F~~~~~~----~~~~~v~L~~~~G~~W~V~l~k~~ 56 (354)
|+-|.||- +..+ ....+.|+..=+++... +..+.|.|.|.+|..|...+...+
T Consensus 1 MrmpRff~---~~~l~~~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~ 58 (251)
T 4e8b_A 1 MRIPRIYH---PEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSAS 58 (251)
T ss_dssp --CCEEEC---SSCCCTTCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEEC
T ss_pred CCCCEEEE---CcccCCCCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEee
Confidence 88898884 3322 24678999887776543 457899999999999999887653
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=23.45 E-value=91 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.0
Q ss_pred CceEEcCHHHHHhhCCCCCeeEEEE
Q 018533 262 GCIMYLPSCFAEKHLNGVCGFIKLQ 286 (354)
Q Consensus 262 ~~~L~iP~~f~~~~l~~~~~~i~L~ 286 (354)
.|.+.||+.++++........+.|.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ 48 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILN 48 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEE
Confidence 4789999999999877665555444
No 20
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=21.54 E-value=1e+02 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=16.1
Q ss_pred ccHHHhhhhcCCCCCcEEEE
Q 018533 308 QGWYEFTVENRLGEGDVCVF 327 (354)
Q Consensus 308 ~GW~~F~~~n~Lk~GD~cvF 327 (354)
..|.+.+.. .|++||++.+
T Consensus 54 tlW~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 54 TLWNELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEGGGGGC-CCCTTCEEEE
T ss_pred EEECCcccc-ccCCCCEEEE
Confidence 368888876 8999999998
Done!