BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018535
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 151 YARIYLADIMPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNFFTDL 210
YAR+ L + + A+ +V+YLD D++V D + LWD DL L A + F +
Sbjct: 84 YARLKLGEYI-ADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGAS-------IDLFVER 135
Query: 211 FWSDRNLAKTFDGRDPCYFNTGVMVMNVEKWRQGGYSQRVEEWMVVQKQKRIYHLGSLPP 270
+ DG YFN GV+++N++KWR+ + EW V++ K +
Sbjct: 136 QEGYKQKIGXADGE--YYFNAGVLLINLKKWRRHDIFKXSSEW--VEQYKDVXQYQDQDI 191
Query: 271 FLLVLAGNIKGVDHRWN----QHGLGGDNIEGKC-------RNLHPGPISLLHWSGKGKP 319
+ G + + R+N + + + R P+++ H+ G KP
Sbjct: 192 LNGLFKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPAKP 251
Query: 320 WLR 322
W R
Sbjct: 252 WHR 254
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 150 NYARIYLADIMPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNFFTD 209
YAR+ L + + A+ +V+YLD D++V D + LWD DL L A C + F +
Sbjct: 83 TYARLKLGEYI-ADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA---C----IDLFVE 134
Query: 210 LFWSDRNLAKTFDGRDPCYFNTGVMVMNVEKWRQGGYSQRVEEWMVVQKQKRIYHLGSLP 269
+ DG YFN GV+++N++KWR+ + EW V++ K +
Sbjct: 135 RQEGYKQKIGMADGE--YYFNAGVLLINLKKWRRHDIFKMSCEW--VEQYKDVMQYQDED 190
Query: 270 PFLLVLAGNIKGVDHRWNQHGLGGDNIEGKCRNLHPG-----------PISLLHWSGKGK 318
+ G + + R+N + + + H P+++ H+ G K
Sbjct: 191 ILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPAK 250
Query: 319 PWLR 322
PW R
Sbjct: 251 PWHR 254
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 151 YARIYLADIMPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNFFTDL 210
Y R+ + +P N+ ++YLD D +V++ + L D+ +LAA H T+
Sbjct: 88 YYRLLAGEFLPENLGEILYLDPDXLVINPLDDLLRTDISDYILAAA--SHTGKTDXAN-- 143
Query: 211 FWSDRNLAKTFDGRDPCYFNTGVMVMNVEKWRQ 243
N+ + G D Y+N+G++++N+++ R+
Sbjct: 144 -----NVNRIRLGTDTDYYNSGLLLINLKRARE 171
>pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 95 QNIEFHFLYSNFEPDVYSSINSTFPYLNLKVYKFDSNRVRGKISKSIRQALDQPLNYARI 154
N++ L + S I T + + + GK+ RQ L + LNY +
Sbjct: 16 SNVDIMSLAPTRNAAIQSIIMDTKRSVAVNLAGIQGALASGKMGGKGRQILGRGLNYDIV 75
Query: 155 YLADIMPANVKRVIYL----DSDLVVVDDIGKLWDVDLEGRVLAAPEYCHAN------FT 204
AD + NVK+++ + D++++ V L + R++A ++ A T
Sbjct: 76 GNADAIAENVKKLVQVDEGDDTNVIKVKGGKSLLIQSPKSRIIAGADFMSATTVGAAAVT 135
Query: 205 NFFTDLFWSD 214
D+F +D
Sbjct: 136 QTIMDMFGTD 145
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 150 NYARIYLADI--MPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNF 206
+AR Y+ + MP I+ ++ + +D +G++ +D + RV AA HA F+ +
Sbjct: 259 EHARTYIQSLPPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQY 317
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 150 NYARIYLADI--MPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNF 206
+AR Y+ + MP I+ ++ + +D +G++ +D + RV AA HA F+ +
Sbjct: 259 EHARTYIQSLPPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQY 317
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 150 NYARIYLADI--MPANVKRVIYLDSDLVVVDDIGKLWDVDLEGRVLAAPEYCHANFTNF 206
+AR Y+ + MP I+ ++ + +D +G++ +D + RV AA HA F+ +
Sbjct: 251 EHARTYIQSLPPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQY 309
>pdb|3OPK|A Chain A, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|B Chain B, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|C Chain C, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 118
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 298 GKCRNLHPGPISLLHWSGKGKPWLRLDSRKPCTVDHLWAPYDLYRPPPSTHSPEL 352
C L PG SL +W GK + + TV H A D + +PEL
Sbjct: 43 AACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPEL 97
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 94 PQNIEFHFLYSNFEPDVYSSINSTFPYLNLKVYKFDSNRVRGKISKSIRQALDQPLNYAR 153
+N+++ +FE D+Y L L+V KF + + + ++ A+DQ + AR
Sbjct: 225 ARNVKYEVYILDFEGDLYGQ------RLKLEVLKFXRDEKKFDSIEELKAAIDQDVKSAR 278
Query: 154 IYLADIMPANVKR 166
+ DI+ + ++
Sbjct: 279 NXIDDIINSKFEK 291
>pdb|2YF6|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
pdb|2YEZ|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
pdb|2YF1|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 11mer
Chicken Peptide
pdb|2YF5|A Chain A, Complex Of A B21 Chicken Mhc Class I Molecule And A 10mer
Chicken Peptide
Length = 329
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 220 TFDGRDPCYFNTGVMVMNV---------EKWRQGGYSQRVEEWM 254
+DGRD F+ G M + KW +GGY++ +++++
Sbjct: 135 AYDGRDFVAFDKGTMTLTAAVPEAVPTKRKWEEGGYAEGLKQYL 178
>pdb|3BEW|A Chain A, 10mer Crystal Structure Of Chicken Mhc Class I Haplotype
B21
pdb|3BEW|D Chain D, 10mer Crystal Structure Of Chicken Mhc Class I Haplotype
B21
Length = 271
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 220 TFDGRDPCYFNTGVMVMNV---------EKWRQGGYSQRVEEWM 254
+DGRD F+ G M + KW +GGY++ +++++
Sbjct: 114 AYDGRDFVAFDKGTMTLTAAVPEAVPTKRKWEEGGYAEGLKQYL 157
>pdb|3BEV|A Chain A, 11mer Structure Of An Mhc Class I Molecule From B21
Chickens Illustrate Promiscuous Peptide Binding
Length = 274
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 220 TFDGRDPCYFNTGVMVMNV---------EKWRQGGYSQRVEEWM 254
+DGRD F+ G M + KW +GGY++ +++++
Sbjct: 114 AYDGRDFVAFDKGTMTLTAAVPEAVPTKRKWEEGGYAEGLKQYL 157
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 94 PQNIEFHFLYSNFEPDVYSSINSTFPYLNLKVYKFDSNRVRGKISKSIRQALDQPLNYAR 153
+N+++ +FE D+Y L L+V KF + + + ++ A+DQ + AR
Sbjct: 225 ARNVKYEVYILDFEGDLYGQ------RLKLEVLKFMRDEKKFDSIEELKAAIDQDVKSAR 278
Query: 154 IYLADIMPANVKR 166
+ DI+ + ++
Sbjct: 279 NMIDDIINSKFEK 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,064,348
Number of Sequences: 62578
Number of extensions: 494594
Number of successful extensions: 856
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 16
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)