Query 018536
Match_columns 354
No_of_seqs 191 out of 1194
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2426 Dihydroxyacetone kinas 100.0 8E-114 2E-118 854.8 30.2 347 1-353 71-430 (582)
2 PRK14479 dihydroxyacetone kina 100.0 1E-112 3E-117 881.9 37.3 343 1-353 67-410 (568)
3 TIGR02361 dak_ATP dihydroxyace 100.0 5E-112 1E-116 878.9 38.0 349 1-353 66-423 (574)
4 PTZ00375 dihydroxyacetone kina 100.0 2E-111 4E-116 873.6 36.6 341 1-353 70-424 (584)
5 PRK14481 dihydroxyacetone kina 100.0 2E-105 4E-110 779.6 29.8 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 3E-105 6E-110 777.9 29.5 260 1-265 69-329 (329)
7 TIGR02362 dhaK1b probable dihy 100.0 6E-105 1E-109 774.6 29.2 260 1-265 65-326 (326)
8 PRK14483 DhaKLM operon coactiv 100.0 8E-105 2E-109 774.0 29.3 260 1-265 67-329 (329)
9 PRK11468 dihydroxyacetone kina 100.0 1E-104 2E-109 777.7 30.0 266 1-268 68-355 (356)
10 PF02733 Dak1: Dak1 domain; I 100.0 5E-106 1E-110 783.1 20.4 267 1-268 52-325 (325)
11 COG2376 DAK1 Dihydroxyacetone 100.0 9.8E-79 2.1E-83 590.0 22.3 256 1-265 67-323 (323)
12 COG2376 DAK1 Dihydroxyacetone 94.6 0.027 5.8E-07 56.0 3.1 50 304-353 16-73 (323)
13 TIGR03599 YloV DAK2 domain fus 89.0 35 0.00077 36.4 19.1 178 4-230 337-519 (530)
14 TIGR02364 dha_pts dihydroxyace 84.0 5.5 0.00012 34.3 7.7 78 15-113 44-124 (125)
15 PRK11377 dihydroxyacetone kina 82.6 11 0.00024 39.6 10.6 121 15-157 48-170 (473)
16 PRK14484 phosphotransferase ma 82.3 3.4 7.3E-05 35.8 5.6 77 15-113 44-120 (124)
17 PRK09314 bifunctional 3,4-dihy 79.5 2.5 5.5E-05 42.5 4.4 55 4-59 252-310 (339)
18 PF13684 Dak1_2: Dihydroxyacet 74.4 95 0.0021 30.8 15.8 179 4-230 119-302 (313)
19 PF00925 GTP_cyclohydro2: GTP 72.6 3 6.4E-05 37.6 2.6 61 4-65 51-146 (169)
20 PRK12485 bifunctional 3,4-dihy 69.8 5.6 0.00012 40.5 4.1 60 4-63 256-345 (369)
21 PRK00393 ribA GTP cyclohydrola 66.6 9.5 0.0002 35.3 4.6 34 4-37 53-90 (197)
22 TIGR00505 ribA GTP cyclohydrol 63.4 12 0.00026 34.4 4.6 34 4-37 50-87 (191)
23 TIGR00762 DegV EDD domain prot 62.9 42 0.00091 32.2 8.5 94 12-121 60-156 (275)
24 cd00641 GTP_cyclohydro2 GTP cy 61.4 14 0.0003 34.0 4.7 34 4-37 52-89 (193)
25 PLN02831 Bifunctional GTP cycl 59.4 9.8 0.00021 39.8 3.7 38 3-40 290-331 (450)
26 PF02645 DegV: Uncharacterised 58.7 38 0.00082 32.6 7.4 185 12-235 61-266 (280)
27 PRK09311 bifunctional 3,4-dihy 54.3 17 0.00038 37.4 4.5 35 3-37 256-294 (402)
28 cd00615 Orn_deC_like Ornithine 54.3 33 0.00071 32.8 6.2 54 12-69 138-191 (294)
29 PTZ00397 macrophage migration 52.8 30 0.00065 28.8 5.0 41 190-230 59-99 (116)
30 COG3412 Uncharacterized protei 51.3 24 0.00052 30.9 4.1 79 14-111 44-122 (129)
31 PRK08815 GTP cyclohydrolase; P 48.7 15 0.00033 37.5 3.0 38 4-42 224-265 (375)
32 PRK14019 bifunctional 3,4-dihy 48.1 20 0.00044 36.4 3.8 56 4-59 256-337 (367)
33 PTZ00450 macrophage migration 48.1 21 0.00046 30.2 3.3 41 190-230 59-99 (113)
34 PF00975 Thioesterase: Thioest 47.8 26 0.00055 31.4 4.1 76 145-236 31-107 (229)
35 PRK05340 UDP-2,3-diacylglucosa 46.9 27 0.00058 32.6 4.2 36 5-40 37-81 (241)
36 COG1732 OpuBC Periplasmic glyc 44.9 52 0.0011 32.8 5.9 87 120-238 14-100 (300)
37 COG0616 SppA Periplasmic serin 43.8 90 0.0019 30.9 7.5 60 165-236 83-142 (317)
38 PRK09318 bifunctional 3,4-dihy 42.5 21 0.00046 36.6 2.9 39 3-42 239-280 (387)
39 PF03793 PASTA: PASTA domain; 37.6 59 0.0013 23.6 4.0 30 34-65 1-30 (63)
40 TIGR01854 lipid_A_lpxH UDP-2,3 36.3 54 0.0012 30.4 4.4 37 5-41 35-80 (231)
41 COG1105 FruK Fructose-1-phosph 36.0 1.7E+02 0.0036 29.4 8.0 126 113-262 67-199 (310)
42 PRK09319 bifunctional 3,4-dihy 35.7 39 0.00085 36.3 3.7 38 3-41 261-302 (555)
43 cd03465 URO-D_like The URO-D _ 34.2 96 0.0021 29.9 6.0 107 11-132 205-315 (330)
44 COG1416 Uncharacterized conser 33.5 92 0.002 26.7 4.9 71 164-241 13-83 (112)
45 TIGR00619 sbcd exonuclease Sbc 33.1 1.7E+02 0.0036 27.8 7.3 54 5-60 44-105 (253)
46 PF02955 GSH-S_ATP: Prokaryoti 33.1 93 0.002 28.3 5.3 58 179-237 75-159 (173)
47 PF08353 DUF1727: Domain of un 32.7 53 0.0012 27.9 3.4 33 9-41 80-112 (113)
48 PF01187 MIF: Macrophage migra 32.5 36 0.00078 28.4 2.3 41 190-230 57-97 (114)
49 PLN03065 isocitrate dehydrogen 32.5 5E+02 0.011 27.7 11.1 135 22-175 324-474 (483)
50 PF02873 MurB_C: UDP-N-acetyle 32.3 61 0.0013 27.2 3.7 34 192-226 66-99 (105)
51 PRK07198 hypothetical protein; 31.2 76 0.0016 33.0 4.8 38 3-41 246-291 (418)
52 PF02633 Creatininase: Creatin 31.0 2.5E+02 0.0055 26.1 8.1 62 151-226 72-134 (237)
53 TIGR02326 transamin_PhnW 2-ami 30.9 1.6E+02 0.0034 28.7 7.0 57 10-71 58-115 (363)
54 cd07385 MPP_YkuE_C Bacillus su 30.4 1.2E+02 0.0026 27.2 5.6 54 5-58 37-92 (223)
55 COG1307 DegV Uncharacterized p 30.0 4.9E+02 0.011 25.4 10.1 203 14-246 64-279 (282)
56 PRK00115 hemE uroporphyrinogen 30.0 73 0.0016 31.6 4.4 106 11-132 221-328 (346)
57 KOG1526 NADP-dependent isocitr 29.7 37 0.00081 34.1 2.2 129 24-175 267-414 (422)
58 PRK05647 purN phosphoribosylgl 29.3 97 0.0021 28.6 4.8 45 14-63 13-57 (200)
59 TIGR00347 bioD dethiobiotin sy 28.9 74 0.0016 27.5 3.8 38 29-66 129-166 (166)
60 TIGR00639 PurN phosphoribosylg 28.4 99 0.0021 28.4 4.7 48 10-62 5-55 (190)
61 PHA02097 hypothetical protein 28.1 26 0.00057 26.1 0.6 23 25-48 15-37 (59)
62 COG3208 GrsT Predicted thioest 27.0 1.5E+02 0.0033 28.7 5.8 56 159-229 52-107 (244)
63 PF13500 AAA_26: AAA domain; P 26.5 41 0.00089 30.1 1.8 39 29-67 129-167 (199)
64 TIGR01753 flav_short flavodoxi 26.0 3.7E+02 0.008 22.0 7.6 102 107-225 13-114 (140)
65 cd06167 LabA_like LabA_like pr 25.9 1.5E+02 0.0033 25.0 5.1 44 19-66 88-132 (149)
66 COG2100 Predicted Fe-S oxidore 25.7 2E+02 0.0044 29.4 6.6 98 7-131 168-267 (414)
67 COG0336 TrmD tRNA-(guanine-N1) 25.7 47 0.001 32.0 2.1 58 16-73 64-133 (240)
68 PF14552 Tautomerase_2: Tautom 23.6 59 0.0013 26.0 2.0 52 179-230 18-70 (82)
69 PF08708 PriCT_1: Primase C te 23.4 1.3E+02 0.0028 22.7 3.8 32 86-117 13-49 (71)
70 PF07788 DUF1626: Protein of u 23.2 71 0.0015 25.1 2.3 24 31-59 47-70 (70)
71 cd07404 MPP_MS158 Microscilla 22.4 1.1E+02 0.0025 26.3 3.8 9 190-198 157-165 (166)
72 TIGR01822 2am3keto_CoA 2-amino 22.1 2.3E+02 0.0049 27.8 6.3 54 13-70 151-209 (393)
73 PF12327 FtsZ_C: FtsZ family, 21.9 2.7E+02 0.0058 22.6 5.6 73 163-246 16-90 (95)
74 cd05013 SIS_RpiR RpiR-like pro 21.5 2.5E+02 0.0054 22.6 5.5 57 10-70 42-98 (139)
75 TIGR01464 hemE uroporphyrinoge 21.4 1.7E+02 0.0036 28.7 5.2 108 11-134 215-325 (338)
76 PRK11340 phosphodiesterase Yae 21.1 2.2E+02 0.0047 27.2 5.7 55 5-59 85-144 (271)
77 PF14468 DUF4427: Protein of u 21.0 3.5E+02 0.0077 23.7 6.3 99 102-226 2-104 (132)
78 PRK11414 colanic acid/biofilm 20.8 4.1E+02 0.0088 24.2 7.3 71 153-236 2-77 (221)
No 1
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-114 Score=854.79 Aligned_cols=347 Identities=49% Similarity=0.793 Sum_probs=319.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~-~~g 79 (354)
|||||+||+||||||++|||+|||+|.+.+|+|+||||||||+||||||+|+||++|++||+|+|+||||+++++. ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEeccccCCCCcccc-
Q 018536 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVA- 158 (354)
Q Consensus 80 RRGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~- 158 (354)
||||||||||||||||+|++|++|++|+++++.+++|+.|||++|+||++||++++++|+++|||+|||||||||++|.
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred cCCCHHHHHHHHHHHHHcc--ccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 018536 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (354)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~--~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (354)
+++|+++||.+||++|+++ +|+|++++++|+||+|||||||+|.|||++++.++.++|+.+|||.|+|+|+|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6777999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecc---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccchHHH
Q 018536 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (354)
Q Consensus 237 ~m~GfSiTll~l---------d~~l~~lLdaP~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (354)
||+||||||||. |..+++|+|+|+++|+||.......+ .+..+.....+. ..+.++....+.+.+
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~-----~~~~~~~s~~~~-~~~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVP-----TPPISSSSLEHL-ESEKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCC-----CCCCCCcchhhc-ccccCCCccccHHHH
Confidence 999999999999 78899999999999999986532111 111111111111 122333667789999
Q ss_pred HHHHHHHHHHHHHhHhhhhhhcccCCCCcchhhHHHHHHHHHHhhc
Q 018536 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKK 353 (354)
Q Consensus 308 ~~~l~~~~~~ii~~e~~Lt~LD~~iGDGDhG~tl~rGa~av~~~l~ 353 (354)
..||.++++.|++.||.||+||+.+||||||+||.||+++|++.++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k 430 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALK 430 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999884
No 2
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=1.5e-112 Score=881.88 Aligned_cols=343 Identities=44% Similarity=0.674 Sum_probs=308.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655568899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
+.++++++++|+++|+++ ++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999996 68899999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccchHHHHHHHHHHHHHHH
Q 018536 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAAEAVV 319 (354)
Q Consensus 240 GfSiTll~ld~~l~~lLdaP~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii 319 (354)
|||||||++|++|++|||+||++|+||.... ..+.. +.......... ...........+...+++||+.+|+.|+
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~-~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~a~~l~ 376 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGA-VEPVE--YVEAAEEDDAE--EPPRASKASRATAANLVAALDAVAEALI 376 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCc-ccccC--ccccccccccc--ccccCCccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999966311 00110 00000000000 0000011112346889999999999999
Q ss_pred HhHhhhhhhcccCCCCcchhhHHHHHHHHHHhhc
Q 018536 320 NLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKK 353 (354)
Q Consensus 320 ~~e~~Lt~LD~~iGDGDhG~tl~rGa~av~~~l~ 353 (354)
+++++||+||+.+||||||+||.+||+++.+.++
T Consensus 377 ~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~ 410 (568)
T PRK14479 377 DNEDELGELDAVAGDGDHGIGMARGSKAALAAAR 410 (568)
T ss_pred HhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875
No 3
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=4.9e-112 Score=878.92 Aligned_cols=349 Identities=49% Similarity=0.766 Sum_probs=308.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCC
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~-~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~-~~~ 78 (354)
||||||||+||||||++||++|||++++ ++|||||||||||||||||||+|+|+++||+|++|+|+||||+++.+ .++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 99999999999999999999999999999999999999999998743 478
Q ss_pred CccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCC-CCCCCceEEeccccCCCCccc
Q 018536 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (354)
Q Consensus 79 gRRGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f-~l~~~e~E~G~GIHgEpG~~~ 157 (354)
||||+|||||||||+||+|++|.||+||+++++++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976655 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHccc--cCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccc
Q 018536 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (354)
Q Consensus 158 ~~~~~-a~~lv~~ml~~ll~~~--r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~T 234 (354)
.++.| +++++++|+++|+++. |+|++++++|+|+||||||||||+||||++++++.++|+++++|+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67899999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEecccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccchHHHHHHH
Q 018536 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (354)
Q Consensus 235 Sl~m~GfSiTll~ld~---~l~~lLdaP~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (354)
||||+||||||+++|+ +|++|||+||++|+||.......+............ . ...........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREVVSSSA-P---ELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCccccccccccccccccc-c---ccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 999999999999999763211101000000000000 0 00010111123568899999
Q ss_pred HHHHHHHHHhHhhhhhhcccCCCCcchhhHHHHHHHHHHhhc
Q 018536 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKK 353 (354)
Q Consensus 312 ~~~~~~ii~~e~~Lt~LD~~iGDGDhG~tl~rGa~av~~~l~ 353 (354)
+++|+.++++|++||+||+.+||||||+||.+|++++.+.++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~ 423 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLK 423 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999998875
No 4
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=1.7e-111 Score=873.56 Aligned_cols=341 Identities=41% Similarity=0.646 Sum_probs=303.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||||||||||||||||||+|+|+++||+|++|+|+||||++ +.+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEeccccCCCCcccccC
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~~ 160 (354)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999954488999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccc--c---CCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccc
Q 018536 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (354)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~--r---~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TS 235 (354)
+++++++++|+++|+++. + ++++++++|+|+|||||||+||++|||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999887 999999999999999
Q ss_pred cCCCcceEEEecccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccchHH
Q 018536 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (354)
Q Consensus 236 l~m~GfSiTll~ld~-~l~~--------lLdaP~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (354)
|||+||||||+++|| +|++ |||+||++|+||.... +... .... .... .....+.. +.....
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~~~~--~~~~--~~~~--~~~~~~~~-~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---PLSA--LQLA--KPEA--EAASRKAA-TPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---Cccc--cccc--cccc--cccCcccc-chhHHH
Confidence 999999999999965 5999 8888899999976321 1000 0000 0000 00011111 012477
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhcccCCCCcchhhHHHHHHHHHHhhc
Q 018536 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKK 353 (354)
Q Consensus 307 ~~~~l~~~~~~ii~~e~~Lt~LD~~iGDGDhG~tl~rGa~av~~~l~ 353 (354)
+++||+++|+.++++|++||+||+++||||||+||.|||+++.+.++
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~ 424 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLP 424 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999998875
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.8e-105 Score=779.59 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=256.8
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
++|+++++++|+++|+++ ++++++|+++||||||||||.||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68999999999999999999999999999999999877 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCcCCCCCCCC
Q 018536 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (354)
Q Consensus 240 GfSiTll~ld~~l~~lLdaP~~a~~w~~ 267 (354)
||||||+++|++|++|||+||++|+||+
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999976
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=2.7e-105 Score=777.87 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.3
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
+.|+++++++|+++|+++ ++++++|+++|||||||+||++|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 68899999999999999999999999999999999877 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCcCCCCCC
Q 018536 240 GFSISIMKADEVILKHLDATTKAPHW 265 (354)
Q Consensus 240 GfSiTll~ld~~l~~lLdaP~~a~~w 265 (354)
||||||+++|+++++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=6e-105 Score=774.63 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.7
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++.+..||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654445599
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||||++|+||+||+++++++++|++||||||++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
++|+++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 58889999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEecc-cHHHHHhhcCcCCCCCC
Q 018536 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (354)
Q Consensus 240 GfSiTll~l-d~~l~~lLdaP~~a~~w 265 (354)
|||||||++ |++|++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 8
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=7.6e-105 Score=774.05 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.7
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~-~~~~~g 79 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++ +++..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 655669
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCcccc
Q 018536 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (354)
Q Consensus 80 RRGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~ 158 (354)
|||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 018536 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (354)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m 238 (354)
++.|+++++++|+++|+++ ++++++|+|+||||||||||++|||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 58889999999999999999999999999999999877 999999999999999999
Q ss_pred CcceEEEecc-cHHHHHhhcCcCCCCCC
Q 018536 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (354)
Q Consensus 239 ~GfSiTll~l-d~~l~~lLdaP~~a~~w 265 (354)
+||||||+++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 9
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.1e-104 Score=777.66 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=257.9
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++++++||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999887778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccc---------------------cCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhh
Q 018536 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~---------------------r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~ 218 (354)
+.|+++++++|+++|+++. |+ ++++++|+|+||||||||||.+|||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 22 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEeeecccccccCCCcceEEEecccHHHHHhhcCcCCCCCCCCC
Q 018536 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (354)
Q Consensus 219 ~~gi~v~r~~vG~~~TSl~m~GfSiTll~ld~~l~~lLdaP~~a~~w~~~ 268 (354)
+ ||+|+|+|+|+|||||||+|||||||++|+++++|||+||++|+|+++
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 7 999999999999999999999999999999999999999999999653
No 10
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=5e-106 Score=783.09 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.2
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~-~g 79 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875 99
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCcccc
Q 018536 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (354)
Q Consensus 80 RRGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~ 158 (354)
|||+||+||||||+|||||+|+||+||++++++++++++||||+|+|||+|| ++++|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHccc---cCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeecccc
Q 018536 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (354)
Q Consensus 159 ~~~~-a~~lv~~ml~~ll~~~---r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L-~~~~gi~v~r~~vG~~~ 233 (354)
++.| +++++++|+++|+++. |+|++++++|+++||||||||||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 77899999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEecccHHHHHhhcCcCCCCCCCCC
Q 018536 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (354)
Q Consensus 234 TSl~m~GfSiTll~ld~~l~~lLdaP~~a~~w~~~ 268 (354)
|||||+|||||||++|+++++|||+||++|+|+++
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999873
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-79 Score=590.03 Aligned_cols=256 Identities=45% Similarity=0.719 Sum_probs=248.2
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCCC
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIAG 79 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~-~~~g 79 (354)
||+|+++|++|+||+++|||++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|+|||++.++. ..++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999875 4789
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEeccccCCCCccccc
Q 018536 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 80 RRGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
|||++|++|||||+||+|++|+||+++.+++++++.+++|+|++|++|++|+... |++++||||+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999433 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
++++++++.+|+++|+++ ++++ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|.++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999985 5677 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCcCCCCCC
Q 018536 240 GFSISIMKADEVILKHLDATTKAPHW 265 (354)
Q Consensus 240 GfSiTll~ld~~l~~lLdaP~~a~~w 265 (354)
||||||+++|++|++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 55
No 12
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.027 Score=56.04 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHH----HhHhhhhh--hcccCCCCcchhhHH--HHHHHHHHhhc
Q 018536 304 GHVLEVTIEAAAEAVV----NLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKK 353 (354)
Q Consensus 304 ~~~~~~~l~~~~~~ii----~~e~~Lt~--LD~~iGDGDhG~tl~--rGa~av~~~l~ 353 (354)
.+.+.+++....+.+. .+++++++ +|..+||||||.||+ +|+..+.+++.
T Consensus 16 l~g~~~~~~~~~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~ 73 (323)
T COG2376 16 LEGLAKALPDLLDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALV 73 (323)
T ss_pred HHHHHHHHHHHHHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhc
Confidence 3445556666666654 89999999 999999999999999 99998887663
No 13
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=88.96 E-value=35 Score=36.39 Aligned_cols=178 Identities=23% Similarity=0.241 Sum_probs=114.9
Q ss_pred eeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccc
Q 018536 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRG 82 (354)
Q Consensus 4 Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRG 82 (354)
..++|.==.-||+.+|++||+.++... |+++-.|. |.=||+|+|... +.+|.+|- .+. =-.|
T Consensus 337 ~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vvp---------T~s--~~qg 399 (530)
T TIGR03599 337 VVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVIP---------TKT--IVQG 399 (530)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEEe---------CCC--HHHH
Confidence 345555434799999999999987655 88887773 888999999764 55544432 221 1223
Q ss_pred cchhhhHHHHHhHHH-HcCCCHHHHHHHHHHHHhhhccccccc--cccccCCCCCCCCCCCCceEEeccccCCCCccccc
Q 018536 83 LAGTILVNKIAGAAA-AAGLSLADVAAEAKRASEMVGTMGVAL--SVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 83 laG~vlv~KiaGAaA-e~G~~L~ev~~~a~~~~~~~~Tigval--~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
++ -.++ ....++++-.+.-..+..+++|.-|.. ..-++.| ..+.+|+. |||-+..=+..
T Consensus 400 ia---------Al~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~-- 461 (530)
T TIGR03599 400 LA---------ALLVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV-- 461 (530)
T ss_pred HH---------HHHhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--
Confidence 32 2222 568899999999999999998877633 2222332 12223322 33333221111
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeec
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG 230 (354)
=++..+.+..+++++++ ++.+++-++-|=+.+.. .++.+.++++++| ++.+...+.|
T Consensus 462 ~~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 462 GKDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred cCCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 23567888888888865 47788888888777765 4577777888887 7888876665
No 14
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=84.04 E-value=5.5 Score=34.34 Aligned_cols=78 Identities=28% Similarity=0.296 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhhcC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 018536 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (354)
Q Consensus 15 s~~~I~~ai~~v~~-~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~Kia 93 (354)
++++|.++|+.+.+ +.|||+++== -|=+||..||.++.+.+.. +.|..-| .=+|....
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n------------------lPlvega~ 102 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD------------------APLVEGAF 102 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec------------------hhHHHHHH
Confidence 56899999999966 8999988844 8899999999999865533 2222211 11344433
Q ss_pred hH--HHHcCCCHHHHHHHHHHH
Q 018536 94 GA--AAAAGLSLADVAAEAKRA 113 (354)
Q Consensus 94 GA--aAe~G~~L~ev~~~a~~~ 113 (354)
-| .+..|.+|++|.+.++.+
T Consensus 103 ~aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 103 AAAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHHcCCCCHHHHHHHHHhc
Confidence 33 335799999999888753
No 15
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=82.58 E-value=11 Score=39.62 Aligned_cols=121 Identities=20% Similarity=0.226 Sum_probs=74.8
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 018536 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (354)
Q Consensus 15 s~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~KiaG 94 (354)
++..|.+||+.+.++.|||+++ ----=+||-+||.|+...+ .+-++.++ | ..+ + =|++ .|-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~-DlGSa~~~~e~a~e~~~~~-~~~~v~~~-~-apl------V-----Eg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMM-DMGSALLSAETALELLDPE-IAAKVRLC-A-APL------V-----EGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEE-ecchHHhHHHHHHHhhccc-ccceEEEe-c-Cch------H-----hHHH----HHH
Confidence 5789999999999999999988 4455589999999998533 32232222 2 111 1 1222 233
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-cccccccccccCCC-CCCCCCCCCceEEeccccCCCCccc
Q 018536 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAV 157 (354)
Q Consensus 95 AaAe~G~~L~ev~~~a~~~~~~~~-Tigval~~c~~Pg~-~~~f~l~~~e~E~G~GIHgEpG~~~ 157 (354)
.+|..|.+|++|.+.++.+...-. ..|... ..|.. .+.-..+.+..+.=+-|.++-|..-
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHA 170 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHV 170 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcH
Confidence 466789999999999998765433 333322 11111 1112224566677666677777643
No 16
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=82.28 E-value=3.4 Score=35.82 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 018536 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (354)
Q Consensus 15 s~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~KiaG 94 (354)
+.++|.++|+.+++ .|||+++== -|=.||-.||.|+...+ .+|++ .| ..+ + =|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d-aPl------V-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID-API------V-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC-CcH------H-----HHHH----HHH
Confidence 57899999999999 999999855 89999999999998655 34443 33 211 0 1222 233
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 018536 95 AAAAAGLSLADVAAEAKRA 113 (354)
Q Consensus 95 AaAe~G~~L~ev~~~a~~~ 113 (354)
..|..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4557899999999988864
No 17
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=79.49 E-value=2.5 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=44.6
Q ss_pred eeecCCccCCCCHHHHHHHHHhhcCCCceEEEeecccc----ccccHHHHHHHHHhcCCc
Q 018536 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (354)
Q Consensus 4 Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtG----D~lnFgmA~e~a~~~G~~ 59 (354)
.+..||+|+|....|+-.|++.+....|||+.. +..| |--+||+++++.+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYL-rqegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFL-NTESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEE-cCCCCCcccccchhHHHHHHHHCCCC
Confidence 356799999998899999999876555998865 3333 578999999999999985
No 18
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=74.39 E-value=95 Score=30.77 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=102.4
Q ss_pred eeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCcc
Q 018536 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRR 81 (354)
Q Consensus 4 Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRR 81 (354)
..+.|.-=-.||+..|++||+.++... |+++-.| -|.-||+++|... +.+|.+| |.+ .=-.
T Consensus 119 ~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~Vi---------pTk--s~~q 181 (313)
T PF13684_consen 119 VVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVVI---------PTK--SIPQ 181 (313)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEEE---------ecC--CHHH
Confidence 345555435799999999999986544 7777655 5777888887653 3332222 111 1123
Q ss_pred ccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEe--ccccCCCCccccc
Q 018536 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELG--LGIHGEPGAAVAD 159 (354)
Q Consensus 82 GlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G--~GIHgEpG~~~~~ 159 (354)
|++..+ +-....++++-.+.-+.+..+++|.-+..... ...+...++.-| +||.+.--+...
T Consensus 182 GlaAl~--------~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avr-------d~~~~~~~i~~gd~igl~~~~i~~~~- 245 (313)
T PF13684_consen 182 GLAALL--------VFDPEADLEENVEAMTEAAARVRTGEITYAVR-------DTKINGGEIKKGDYIGLVDGKIVVVG- 245 (313)
T ss_pred HHHHHH--------HhCccCChHHHHHHHHHHHhhCeeeeEEEeee-------cceecCcccccCCEEEEeCCEEEEEc-
Confidence 332211 11344588888888888888888776644411 111222233322 455444333322
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeec
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG 230 (354)
.+..+.+..+++++++ ++.+++-++=| ..++.-| +..+.++|+++| ++.+.-.+.|
T Consensus 246 -~~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~----a~~l~~~l~~~~p~~eve~~~Gg 302 (313)
T PF13684_consen 246 -KDLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEE----AEALAEFLEEKYPDVEVEVYDGG 302 (313)
T ss_pred -CCHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHH----HHHHHHHHHHHhCCeEEEEEECC
Confidence 2466777888888754 36688888877 3444434 445555666665 6666644444
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=72.61 E-value=3 Score=37.62 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=37.3
Q ss_pred eeecCCccCC---CCHHHHHHHHHhhc-CCCceEEEeec-------------------------------cccccccHHH
Q 018536 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (354)
Q Consensus 4 Aav~G~vFaS---Ps~~~I~~ai~~v~-~~~GvL~iv~N-------------------------------YtGD~lnFgm 48 (354)
.+..||+|-| ....|+-.|++.+. .+.|||+.+.+ +-.|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 4567999998 56778888998876 57799999921 1256678999
Q ss_pred HHHHHHhcCCcEEEEEe
Q 018536 49 AAEQAKSEGYKVEIVIV 65 (354)
Q Consensus 49 A~e~a~~~G~~v~~v~v 65 (354)
+++..+.-|++ +|.+.
T Consensus 131 gaqIL~dLGV~-~~rLL 146 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLL 146 (169)
T ss_dssp HHHHHHHTT---SEEEE
T ss_pred HHHHHHHcCCC-EEEEC
Confidence 99999988886 44443
No 20
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=69.76 E-value=5.6 Score=40.52 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=40.3
Q ss_pred eeecCCccCCC----CHHHHHHHHHhhcC-CCceEEEeecccc------------------------ccccHHHHHHHHH
Q 018536 4 AAICGDVFASP----PVDSILAGIHAVTG-PMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (354)
Q Consensus 4 Aav~G~vFaSP----s~~~I~~ai~~v~~-~~GvL~iv~NYtG------------------------D~lnFgmA~e~a~ 54 (354)
.+..||||-|. .-.|...|++.+.. +.|||+...|-.| |--+||+|+++.+
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46789999884 34579999999764 5599886652222 0115778888888
Q ss_pred hcCCc-EEEE
Q 018536 55 SEGYK-VEIV 63 (354)
Q Consensus 55 ~~G~~-v~~v 63 (354)
.-|++ |+..
T Consensus 336 ~LGV~kirLL 345 (369)
T PRK12485 336 DLGVGKLRHL 345 (369)
T ss_pred HcCCCEEEEC
Confidence 87764 4443
No 21
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=66.61 E-value=9.5 Score=35.28 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=26.0
Q ss_pred eeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEee
Q 018536 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (354)
Q Consensus 4 Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~ 37 (354)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~ 90 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLR 90 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEc
Confidence 3567899987644 67888999975 5669998774
No 22
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=63.36 E-value=12 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEee
Q 018536 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (354)
Q Consensus 4 Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~ 37 (354)
.+..||||.|... .|+..|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 3567899987633 68888999875 5679988774
No 23
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=62.87 E-value=42 Score=32.21 Aligned_cols=94 Identities=22% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHhhc-CCCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 018536 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~-~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vl 88 (354)
+.||+.++.++.+... .+.-||+|- ..-+|=.=|+-+|+++.. +++ |.|=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~---i~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAK---VTVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCC---EEEEC-----------ChHHHHHHHH
Confidence 3478888888987653 334566654 344555555666665542 233 22323 2444567888
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccc
Q 018536 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMG 121 (354)
Q Consensus 89 v~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tig 121 (354)
+..-|..+.++|.+++||.+..++..+++.+.=
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f 156 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYF 156 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEE
Confidence 888999999999999999999999999888764
No 24
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=61.35 E-value=14 Score=33.98 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.6
Q ss_pred eeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEee
Q 018536 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (354)
Q Consensus 4 Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~ 37 (354)
.+..+|||.|... .|+..|++.+. .+.|||+++.
T Consensus 52 ~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 52 ECLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 3567899987643 67888999975 5679988774
No 25
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=59.35 E-value=9.8 Score=39.80 Aligned_cols=38 Identities=16% Similarity=0.398 Sum_probs=28.6
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEeeccc
Q 018536 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYT 40 (354)
Q Consensus 3 ~Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~NYt 40 (354)
+.+..||||-|... .|+-+|++.+. .+.|||+..-|-.
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qe 331 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHE 331 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCC
Confidence 35678999998754 68888999976 5669988775333
No 26
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=58.69 E-value=38 Score=32.57 Aligned_cols=185 Identities=15% Similarity=0.134 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHh-hcCCC-ceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 12 ASPPVDSILAGIHA-VTGPM-GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 12 aSPs~~~I~~ai~~-v~~~~-GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
+.||+.++.+..+. ...+. -||+|- ...+|=-=|.-+|+++. .+.+|.++ | -+-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~Vi---D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHVI---D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEEE---E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEEE---e-----------CCCcchhhh
Confidence 45889999999987 66554 476664 34566555666677666 34444332 2 133445666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccccc------ccccCC----------CCCCCCCCCCceEEeccccC
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~------~c~~Pg----------~~~~f~l~~~e~E~G~GIHg 151 (354)
++..-|-.++++|.|++||.+..+...+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 77777779999999999999999999998876543111 001110 01222333333332
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeec
Q 018536 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (354)
Q Consensus 152 EpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~vG 230 (354)
..+..+.+..++.|++.+... .. ......+.+...- .. | .+.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e---~a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-E---EAEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-H---HHHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-H---HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 345667778888888887432 11 1223333333332 22 3 234555556666565 55555566
Q ss_pred ccccc
Q 018536 231 SFMTS 235 (354)
Q Consensus 231 ~~~TS 235 (354)
.-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55554
No 27
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=54.34 E-value=17 Score=37.38 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=26.9
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEee
Q 018536 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (354)
Q Consensus 3 ~Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~ 37 (354)
+.+..||||-|-.. .|+-.|++.+. .+.|||+...
T Consensus 256 s~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 256 SECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 35678999998543 78888999975 5669988776
No 28
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=54.33 E-value=33 Score=32.84 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccc
Q 018536 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDv 69 (354)
...+++++-++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 45688888888876344555666556999999999888899988775 3455555
No 29
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=52.80 E-value=30 Score=28.79 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
+.+=|...|+.+....--+++++.+.|++.+|+.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 45567778999988788899999999999999999999974
No 30
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.32 E-value=24 Score=30.92 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 018536 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (354)
Q Consensus 14 Ps~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~Kia 93 (354)
-|+.+|.+||..++..+++|+++ ---.=+||-.||.|+...+ +.++..++ | + |--+ |.+ .|
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~~-d-a--PlVE---------Ga~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNILC-D-A--PLVE---------GAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhhc-c-c--chhh---------hHH----HH
Confidence 46899999999888888888877 7778899999999998544 44444322 1 2 2111 111 23
Q ss_pred hHHHHcCCCHHHHHHHHH
Q 018536 94 GAAAAAGLSLADVAAEAK 111 (354)
Q Consensus 94 GAaAe~G~~L~ev~~~a~ 111 (354)
-+.++.|.|+++|..-+.
T Consensus 105 aa~~~~ga~~~evi~~~~ 122 (129)
T COG3412 105 AALLQGGASIDEVIAEAL 122 (129)
T ss_pred HHHHhcCCCHHHHHHHHH
Confidence 345578999988876544
No 31
>PRK08815 GTP cyclohydrolase; Provisional
Probab=48.69 E-value=15 Score=37.45 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=28.3
Q ss_pred eeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEeeccccc
Q 018536 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTGD 42 (354)
Q Consensus 4 Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~NYtGD 42 (354)
.+..||||-|... .|.-+|++.+. .++|||+.. |-.|-
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegr 265 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGR 265 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCc
Confidence 4678999987643 78888999975 667998876 54543
No 32
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=48.12 E-value=20 Score=36.45 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred eeecCCccCCCC---HHHHHHHHHhhc-CCCceEEEeecc-cc---------------------ccccHHHHHHHHHhcC
Q 018536 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (354)
Q Consensus 4 Aav~G~vFaSPs---~~~I~~ai~~v~-~~~GvL~iv~NY-tG---------------------D~lnFgmA~e~a~~~G 57 (354)
.+..||||-|-. -.|+..|++.+. .+.|||+...|- .| |-=+||+|+++.+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 467899998753 478999999975 556998876543 12 3446778888888777
Q ss_pred Cc
Q 018536 58 YK 59 (354)
Q Consensus 58 ~~ 59 (354)
++
T Consensus 336 v~ 337 (367)
T PRK14019 336 VG 337 (367)
T ss_pred CC
Confidence 64
No 33
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=48.10 E-value=21 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=35.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
..+=|..+|+.+.-.-.-+...+.+.|++++||...|+|+-
T Consensus 59 A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 59 AYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 34568899999987777788999999999999999999973
No 34
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=47.83 E-value=26 Score=31.42 Aligned_cols=76 Identities=20% Similarity=0.178 Sum_probs=54.1
Q ss_pred EeccccCCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 018536 145 LGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (354)
Q Consensus 145 ~G~GIHgEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v 224 (354)
+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|+++ |.+|
T Consensus 31 ~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~v 94 (229)
T PF00975_consen 31 YGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEEV 94 (229)
T ss_dssp EEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-SE
T ss_pred EEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhcc
Confidence 344434433 33456789999999999999763 233489999999887 5888899999999 9999
Q ss_pred EEee-eccccccc
Q 018536 225 ERVY-TGSFMTSL 236 (354)
Q Consensus 225 ~r~~-vG~~~TSl 236 (354)
.++. +.+..+..
T Consensus 95 ~~l~liD~~~p~~ 107 (229)
T PF00975_consen 95 SRLILIDSPPPSI 107 (229)
T ss_dssp SEEEEESCSSTTC
T ss_pred CceEEecCCCCCc
Confidence 8765 46555543
No 35
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=46.94 E-value=27 Score=32.61 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.4
Q ss_pred eecCCccC--------CCCHHHHHHHHHhhc-CCCceEEEeeccc
Q 018536 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (354)
Q Consensus 5 av~G~vFa--------SPs~~~I~~ai~~v~-~~~GvL~iv~NYt 40 (354)
.++||+|- +|....+.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 566778888887775 3478999999987
No 36
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=44.85 E-value=52 Score=32.75 Aligned_cols=87 Identities=28% Similarity=0.388 Sum_probs=60.3
Q ss_pred ccccccccccCCCCCCCCCCCCceEEeccccCCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCC
Q 018536 120 MGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGA 199 (354)
Q Consensus 120 igval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ 199 (354)
.-++|..|+.|+-.+ ...+..+-||-.+-.|+ .++..|+..+|+++ | =-+....|||+
T Consensus 14 ~~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~~--------~-~kv~~~~~lG~ 71 (300)
T COG1732 14 SLLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEKN--------G-IKVEDKTGLGG 71 (300)
T ss_pred HHHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHhc--------C-CceeeccCCCc
Confidence 345778899887222 44567777776665555 68899999998852 1 12556899999
Q ss_pred ChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 018536 200 TPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (354)
Q Consensus 200 ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m 238 (354)
|+. +++.|..- .|.+.--|.|+-.+++.-
T Consensus 72 t~v---------~~~Al~~G-~IDiYpEYTGt~~~~~lk 100 (300)
T COG1732 72 TAV---------VRNALKSG-DIDIYPEYTGTALFSFLK 100 (300)
T ss_pred hHH---------HHHHHHcC-CCCeEeeecchhhhhhcc
Confidence 975 34445566 788998999988776654
No 37
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=43.83 E-value=90 Score=30.93 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 018536 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (354)
Q Consensus 165 ~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (354)
+.+.+.++.+..+ ++.+.++|.||.=||+.. .-..+++++ +.|.++ + |+.++++.++-|=
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~-as~~i~~~l-~~l~~~-~--PV~v~v~~~AASG 142 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVV-ASELIARAL-KRLRAK-K--PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchh-HHHHHHHHH-HHHhhc-C--CEEEEECCeecch
Confidence 3446667776442 346779999999999876 333344444 455566 5 8889988777663
No 38
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=42.46 E-value=21 Score=36.62 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=28.1
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhhcCCCceEEEeeccccc
Q 018536 3 TAAICGDVFASPPV---DSILAGIHAVTGPMGCLLIVTNYTGD 42 (354)
Q Consensus 3 ~Aav~G~vFaSPs~---~~I~~ai~~v~~~~GvL~iv~NYtGD 42 (354)
+.+..||||-|-.. .|+-.|++.+....|||+.. |..|-
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvYL-rqegr 280 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIYL-RQEGR 280 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEE-CCCCc
Confidence 35678999998544 78888999986434998654 65643
No 39
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=37.59 E-value=59 Score=23.62 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.6
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEe
Q 018536 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (354)
Q Consensus 34 ~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v 65 (354)
+.+-||+| |+..-|.+.+++.|+++...-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 35789999 9999999999999998877775
No 40
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=36.32 E-value=54 Score=30.42 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.1
Q ss_pred eecCCccCC--------CCHHHHHHHHHhhcC-CCceEEEeecccc
Q 018536 5 AICGDVFAS--------PPVDSILAGIHAVTG-PMGCLLIVTNYTG 41 (354)
Q Consensus 5 av~G~vFaS--------Ps~~~I~~ai~~v~~-~~GvL~iv~NYtG 41 (354)
.++||+|-. |...++.+.++.+.. +.+|.+|.+|+-.
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 478999962 223567777777654 5789999999984
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=36.02 E-value=1.7e+02 Score=29.36 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=83.8
Q ss_pred HHhhhccccccccccccCC-CCCCCCCCCC----ceEEeccccCCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCC
Q 018536 113 ASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRG 187 (354)
Q Consensus 113 ~~~~~~Tigval~~c~~Pg-~~~~f~l~~~----e~E~G~GIHgEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~ 187 (354)
..+.++..|+-..-+.++| .+-++.|-++ |-|| ++||-.. +-+++ +++++++... +.+.
T Consensus 67 ~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~i----s~~~~-~~~l~~~~~~------l~~~ 130 (310)
T COG1105 67 FVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPEI----SEAEL-EQFLEQLKAL------LESD 130 (310)
T ss_pred HHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCCC----CHHHH-HHHHHHHHHh------cccC
Confidence 3455677888888899999 4566666433 4554 5677332 22333 6677776431 2333
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccc-cccCCCcceEEEeccc-HHHHHhhcCcCCC
Q 018536 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTKA 262 (354)
Q Consensus 188 d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~-TSl~m~GfSiTll~ld-~~l~~lLdaP~~a 262 (354)
.++ .++ |+.|+-=-.-.|.++.+++.++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-..
T Consensus 131 -d~V-vls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 131 -DIV-VLS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELTT 199 (310)
T ss_pred -CEE-EEe--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCCC
Confidence 343 344 4555544456788999999888 9999888888666 699998 7888875 6788888877664
No 42
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.70 E-value=39 Score=36.34 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=28.5
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhhc-CCCceEEEeecccc
Q 018536 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (354)
Q Consensus 3 ~Aav~G~vFaSPs~---~~I~~ai~~v~-~~~GvL~iv~NYtG 41 (354)
+.|..||||-|--. .|.-+|++.+. .+.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 45778999988643 78888999976 556998755 6554
No 43
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.15 E-value=96 Score=29.93 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=62.2
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhH
Q 018536 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILV 89 (354)
Q Consensus 11 FaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~g-RRGlaG~vlv 89 (354)
|..|..++|+++++.. +..=++.+.+|++- + .+....-|+++=.+-...|+.-. ++..| |.-+.|.+=.
T Consensus 205 ~~~p~~k~i~~~i~~~-g~~~~lH~cG~~~~---~----~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~ 274 (330)
T cd03465 205 FSLPYLKKVFDAIKAL-GGPVIHHNCGDTAP---I----LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDP 274 (330)
T ss_pred HhhHHHHHHHHHHHHc-CCceEEEECCCchh---H----HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcCh
Confidence 3467778888888764 34446667777661 1 33334445544222222344422 22344 5678888755
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhcc--cccccc-ccccCCC
Q 018536 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQ 132 (354)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~T--igval~-~c~~Pg~ 132 (354)
... + ...+-+||.+..+++.+.++. =|.-|+ .|.+|-.
T Consensus 275 ~~~---l--~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 275 IDV---L--LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred HHh---h--cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 522 1 234669999999999988865 345554 3877754
No 44
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=92 Score=26.72 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCCcc
Q 018536 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (354)
Q Consensus 164 ~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~Gf 241 (354)
.+-+..++..+.+ .+...+.-++.|.+||-|-....+-......-...|.++ |+++ .-+|+=|++.+++.-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~--~aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEF--VACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEE--EEecchHHHcCCCHH
Confidence 4555667766654 466668899999999999888888777776566667777 7665 567998998888753
No 45
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.14 E-value=1.7e+02 Score=27.82 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=33.8
Q ss_pred eecCCccCCCC--HHH---HHHHHHhhcC-C-CceEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 018536 5 AICGDVFASPP--VDS---ILAGIHAVTG-P-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (354)
Q Consensus 5 av~G~vFaSPs--~~~---I~~ai~~v~~-~-~GvL~iv~NYtG-D~lnFgmA~e~a~~~G~~v 60 (354)
.++||+|=..+ ... +...++.+.. + -.|++|.+|+-- +++++ ..+.++..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998644 322 3345544432 3 689999999974 55654 455566666553
No 46
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=33.14 E-value=93 Score=28.30 Aligned_cols=58 Identities=21% Similarity=0.455 Sum_probs=39.2
Q ss_pred cCCCC-CCCCCeEEEEEeC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eecc
Q 018536 179 TNYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGS 231 (354)
Q Consensus 179 r~~~~-~~~~d~vvvlvNn--------------------LG~ts-----~lEl~ii~~~v~~~L~~~~gi~v~r~-~vG~ 231 (354)
+.|++ ...||+=++++|| .||+. .-+..-+++.+...|.++ |+--+++ .+|.
T Consensus 75 Q~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~ 153 (173)
T PF02955_consen 75 QPFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGD 153 (173)
T ss_dssp EE--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETT
T ss_pred EeccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEecccc
Confidence 34666 4678999999997 56654 446777889999999998 9877664 3588
Q ss_pred cccccC
Q 018536 232 FMTSLD 237 (354)
Q Consensus 232 ~~TSl~ 237 (354)
|+|-.|
T Consensus 154 ~l~EiN 159 (173)
T PF02955_consen 154 KLTEIN 159 (173)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 887655
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=32.67 E-value=53 Score=27.86 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=25.5
Q ss_pred CccCCCCHHHHHHHHHhhcCCCceEEEeecccc
Q 018536 9 DVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (354)
Q Consensus 9 ~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtG 41 (354)
.|...|+.++.++.......+.+.++|+.|||.
T Consensus 80 ~i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 80 KIIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred HeEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 345578888888885556677888999999994
No 48
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=32.50 E-value=36 Score=28.37 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
..+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 57 a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 57 AFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 45567899999888888999999999999999999999863
No 49
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=32.49 E-value=5e+02 Score=27.73 Aligned_cols=135 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred HHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---cchh-------hh
Q 018536 22 GIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------IL 88 (354)
Q Consensus 22 ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva---~~~~~~~~gRRG---laG~-------vl 88 (354)
+.+.+.++.|-.++.+||-||+|. .+++...-.-|+- -.+.+++|-. ..+..+.+-|-- ++|- -.
T Consensus 324 ~~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHH
Confidence 346778889999999999999997 5888888777764 4466777753 234343333311 2222 23
Q ss_pred HHHHHhHHHHcCC--CHHHHHHHHHHHHhhhc-cccccccccccCCCCCCCCCCCCceEEeccccCCCCcccccCCCHHH
Q 018536 89 VNKIAGAAAAAGL--SLADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDV 165 (354)
Q Consensus 89 v~KiaGAaAe~G~--~L~ev~~~a~~~~~~~~-Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~~~~a~~ 165 (354)
+.=.+..+...|. .-+++.+.|+++-+.+. |+.- | .-+- .+|.=+||. ...+....+-.|
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~e 464 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEE 464 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHH
Confidence 3344455555565 12345555555544432 2221 1 0011 134445662 223445567778
Q ss_pred HHHHHHHHHH
Q 018536 166 VVSHVLKQIL 175 (354)
Q Consensus 166 lv~~ml~~ll 175 (354)
+.+.+.++|-
T Consensus 465 f~daV~~~L~ 474 (483)
T PLN03065 465 FIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHH
Confidence 8888877773
No 50
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=32.28 E-value=61 Score=27.15 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=23.8
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 018536 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (354)
Q Consensus 192 vlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r 226 (354)
.+|| .|+.+.-+...+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 3455 688888899999999999999999987654
No 51
>PRK07198 hypothetical protein; Validated
Probab=31.20 E-value=76 Score=32.95 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.2
Q ss_pred ceeecCCccCCCCH---HH----HHHHHHhhcC-CCceEEEeecccc
Q 018536 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (354)
Q Consensus 3 ~Aav~G~vFaSPs~---~~----I~~ai~~v~~-~~GvL~iv~NYtG 41 (354)
+.+..||||-|-.. .| |-+|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 45778999999865 44 5567777765 8899988854 65
No 52
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=31.01 E-value=2.5e+02 Score=26.15 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=36.0
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhh-cCCeEEE
Q 018536 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVER 226 (354)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~-~gi~v~r 226 (354)
+=||.-..+-.+...++..+++.|... |=+-+++||+=|| + ....+.+.++|..+ .++.+..
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N---~~~l~~~~~~l~~~~~~~~v~~ 134 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--N---IAALEAAARELRQEYPGVKVFV 134 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--H---HHHHHHHHHHHHHHGCC-EEEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--H---HHHHHHHHHHHHhhCCCcEEEE
Confidence 347765555556667777777777553 4456999999999 2 22345555555555 4666543
No 53
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=30.91 E-value=1.6e+02 Score=28.65 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=39.5
Q ss_pred ccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHH-HHHHHhcCCcEEEEEecccccC
Q 018536 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGDDCAL 71 (354)
Q Consensus 10 vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA-~e~a~~~G~~v~~v~v~DDva~ 71 (354)
+|++.++..+..++...-.++|..+++.| -.|+.. ...|+..|.++..|-+.+|-..
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~-----~~~~~~~~~~a~~~g~~~~~v~~~~~~~~ 115 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVIN-----GAYGARIVQIAEYLGIPHHVVDTGEVEPP 115 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeC-----ChhhHHHHHHHHHcCCceEEEeCCCCCCC
Confidence 47888888888888777666665555443 245543 4567788999999888765544
No 54
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=30.45 E-value=1.2e+02 Score=27.23 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=36.0
Q ss_pred eecCCccCCCCHH--HHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCC
Q 018536 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (354)
Q Consensus 5 av~G~vFaSPs~~--~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~ 58 (354)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4679999876554 56666677766778999999987555444432455555564
No 55
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.04 E-value=4.9e+02 Score=25.40 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHhhcCCC--ceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 018536 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (354)
Q Consensus 14 Ps~~~I~~ai~~v~~~~--GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv 89 (354)
||+..+.++.+...... .||+|- ..-.| .|.. +..|+...-+.++.+++=..+. .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77788888887776543 455553 23333 3555 4444443333444444322221 234455
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccccc--cccccccCCCCCCC--CCCCCceEEeccccCCCCc--ccccCCCH
Q 018536 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV--ALSVCTLPGQVTSD--RLGPGKMELGLGIHGEPGA--AVADLQPV 163 (354)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigv--al~~c~~Pg~~~~f--~l~~~e~E~G~GIHgEpG~--~~~~~~~a 163 (354)
-+=+..++++|.+++|+.+..+++.+++.+.=+ -|+++.-=||=+.. .| -+-.-+=.=++-|.|. --.+..+.
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~l-g~lL~ikPIl~~~~G~~~~~~K~R~~ 206 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFL-GNLLKIKPILSFEDGELVLLGKVRGQ 206 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHH-HhhhcceEEEEEeCCEEEEEeecccH
Confidence 556778999999999999999999999776533 24455444431110 00 0001111122333343 23466777
Q ss_pred HHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeec-ccccccCCCc
Q 018536 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG-SFMTSLDMAG 240 (354)
Q Consensus 164 ~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~--v~r~~vG-~~~TSl~m~G 240 (354)
+..++.|++.+.+. .. ......++++.+-+. | ......+.|.++ ++. +.-...| ...|-.+-..
T Consensus 207 kka~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~vi~~H~G~ga 273 (282)
T COG1307 207 KKAIKKLIELLKKE----VK-DGAGYRVAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGPVIGTHTGPGA 273 (282)
T ss_pred HHHHHHHHHHHHHH----hc-cCCceEEEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCCEEEEEECCCe
Confidence 78888899888764 22 222334444444222 2 344445555555 443 4444444 3444555556
Q ss_pred ceEEEe
Q 018536 241 FSISIM 246 (354)
Q Consensus 241 fSiTll 246 (354)
++|.+.
T Consensus 274 ~~i~~~ 279 (282)
T COG1307 274 LGIGVI 279 (282)
T ss_pred EEEEEE
Confidence 666554
No 56
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=30.02 E-value=73 Score=31.56 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=63.7
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CCccccchhhhH
Q 018536 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AGRRGLAGTILV 89 (354)
Q Consensus 11 FaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~-~gRRGlaG~vlv 89 (354)
|..|..++|+++++....+.-+|++.+|.+.. .+..+.-|+ +.+-++.-+.....++. .+++-+.|.+=-
T Consensus 221 f~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-------~~~~~~~~~--~~is~d~~~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 221 FVLPYMKRIVAELKREHPDVPVILFGKGAGEL-------LEAMAETGA--DVVGLDWTVDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-------HHHHHhcCC--CEEeeCCCCCHHHHHHHcCCCeEEEeCCCh
Confidence 45789999999998742134478888876532 333333455 44545544444322333 345889998743
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccc-cccccCCC
Q 018536 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL-SVCTLPGQ 132 (354)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval-~~c~~Pg~ 132 (354)
. +- .| +-++|.+-++++.+....=|.-| +.|.+|-.
T Consensus 292 ~-----ll-~g-t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 292 A-----VL-LA-PPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred h-----Hh-cC-CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 1 11 23 47999999999998874333333 34777653
No 57
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=29.72 E-value=37 Score=34.13 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=69.7
Q ss_pred HhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCC--CCCCCc------ccc------chhhhH
Q 018536 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPP--RGIAGR------RGL------AGTILV 89 (354)
Q Consensus 24 ~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~--~~~~gR------RGl------aG~vlv 89 (354)
.++.+..|-++-+|||.|||..==+| +---+-|+=..+++.-|--.+..+ .+.+-| +|- -..+|.
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~vA-Qg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFA 345 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIVA-QGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFA 345 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHHH-hcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHH
Confidence 44568899999999999999864333 333455776777776665544321 111111 110 011221
Q ss_pred HHHHhHHHHcCC--CHHHHHHHHHHHHhhh-ccccccccccccCCCCCCCCCCCCce--EEeccccCCCCcccccCCCHH
Q 018536 90 NKIAGAAAAAGL--SLADVAAEAKRASEMV-GTMGVALSVCTLPGQVTSDRLGPGKM--ELGLGIHGEPGAAVADLQPVD 164 (354)
Q Consensus 90 ~KiaGAaAe~G~--~L~ev~~~a~~~~~~~-~Tigval~~c~~Pg~~~~f~l~~~e~--E~G~GIHgEpG~~~~~~~~a~ 164 (354)
..-.++.+|. +-+++..+++.+-..+ .|+ +.|.| .+-+-||| .+.|....+-.
T Consensus 346 --WtRgl~hR~kLD~n~~l~~F~~~LE~aci~tv------------------e~G~MTKDLal~i~g--~~~r~~y~~T~ 403 (422)
T KOG1526|consen 346 --WTRGLAHRAKLDNNEALAKFANALEKACIETV------------------ESGKMTKDLALCIHG--KVERSDYLNTE 403 (422)
T ss_pred --HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH------------------HhccchHhHHHHhcC--CccccccccHH
Confidence 2223444443 3455555555544321 111 11222 24466899 77888888877
Q ss_pred HHHHHHHHHHH
Q 018536 165 VVVSHVLKQIL 175 (354)
Q Consensus 165 ~lv~~ml~~ll 175 (354)
|.++.+-..|-
T Consensus 404 eFidav~~~L~ 414 (422)
T KOG1526|consen 404 EFIDAVASNLK 414 (422)
T ss_pred HHHHHHHHHHH
Confidence 77776665553
No 58
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=29.26 E-value=97 Score=28.63 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEE
Q 018536 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIV 63 (354)
Q Consensus 14 Ps~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v 63 (354)
+....++++++.-.-...|.++|.|-..- -+.+.|++.||++..+
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~-----~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDA-----YGLERAEAAGIPTFVL 57 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccc-----hHHHHHHHcCCCEEEE
Confidence 66677777765544457888888887632 2688999999998654
No 59
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.95 E-value=74 Score=27.47 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 018536 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (354)
Q Consensus 29 ~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~ 66 (354)
+.+||+|+..+-|.+-+--++.+.++..|+++.-++++
T Consensus 129 ~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 129 QLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 56688888888888666667888888888888888764
No 60
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.42 E-value=99 Score=28.37 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.4
Q ss_pred ccCC---CCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEE
Q 018536 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (354)
Q Consensus 10 vFaS---Ps~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~ 62 (354)
||+| .....++++++.=.-..++.+||.|... .-+.++|++.|+++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455566665543334589999999863 2457899999999765
No 61
>PHA02097 hypothetical protein
Probab=28.06 E-value=26 Score=26.13 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.0
Q ss_pred hhcCCCceEEEeeccccccccHHH
Q 018536 25 AVTGPMGCLLIVTNYTGDRLNFGL 48 (354)
Q Consensus 25 ~v~~~~GvL~iv~NYtGD~lnFgm 48 (354)
+.+.+.|||+=| |||=|+-||.|
T Consensus 15 amntp~gv~iri-~~tf~~~~f~~ 37 (59)
T PHA02097 15 AMNTPGGVIIRI-AHTFDVSNFKI 37 (59)
T ss_pred EeeCCCcEEEEE-EeEEeeccceE
Confidence 356788998877 99999999965
No 62
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.03 E-value=1.5e+02 Score=28.74 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=41.1
Q ss_pred cCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
.+.+...+++++.+.|. +...+..++++=-.|||. ++-|+.+.|++. |.-+.-.++
T Consensus 52 ~~~di~~Lad~la~el~-------~~~~d~P~alfGHSmGa~-------lAfEvArrl~~~-g~~p~~lfi 107 (244)
T COG3208 52 LLTDIESLADELANELL-------PPLLDAPFALFGHSMGAM-------LAFEVARRLERA-GLPPRALFI 107 (244)
T ss_pred ccccHHHHHHHHHHHhc-------cccCCCCeeecccchhHH-------HHHHHHHHHHHc-CCCcceEEE
Confidence 55667777777777763 134578899999999985 777888899988 666555443
No 63
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=26.49 E-value=41 Score=30.14 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 018536 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (354)
Q Consensus 29 ~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~D 67 (354)
+.-|++|+..+-|-.=+.-++.|.++.+|+++.-||++.
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 556999999999999999999999999999999999998
No 64
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.00 E-value=3.7e+02 Score=22.01 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEeccccCCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCC
Q 018536 107 AAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITR 186 (354)
Q Consensus 107 ~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~ 186 (354)
.++|+.+.+.+...|+-..-+.+..-.+..-.+.+-+=+|..+|+.-- ++ ..-+..+++.|.. ..+ +
T Consensus 13 ~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~-----~p--~~~~~~f~~~l~~-----~~~-~ 79 (140)
T TIGR01753 13 EEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDED-----LE--QDDFEPFFEELED-----IDL-G 79 (140)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCC-----CC--cchHHHHHHHhhh-----CCC-C
Confidence 345566666555555543333333222222234678889999986421 11 1233445555432 122 3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEE
Q 018536 187 GNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVE 225 (354)
Q Consensus 187 ~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~ 225 (354)
+.+++++- .|+.+. +..-..+.+.+.|+++ |.++.
T Consensus 80 gk~~~vfg--t~g~~~-~f~~~~~~~~~~l~~~-g~~~v 114 (140)
T TIGR01753 80 GKKVALFG--SGDWGY-EFCEAVDDWEERLKEA-GATII 114 (140)
T ss_pred CCEEEEEe--cCCCCc-hhhHHHHHHHHHHHHC-CCEEe
Confidence 66666664 455443 2455677788888776 87764
No 65
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.88 E-value=1.5e+02 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHHhhcC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 018536 19 ILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (354)
Q Consensus 19 I~~ai~~v~~-~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~ 66 (354)
++++++.+.. .-.+++|+ |||. .|-=+++++++.|.+|..+-..
T Consensus 88 ~~d~~~~~~~~~~d~ivLv---SgD~-Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 88 AIDALELAYKRRIDTIVLV---SGDS-DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHHhhhcCCCEEEEE---ECCc-cHHHHHHHHHHcCCEEEEEccC
Confidence 3445555443 33567776 5666 8888888888888888776554
No 66
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.73 E-value=2e+02 Score=29.42 Aligned_cols=98 Identities=21% Similarity=0.338 Sum_probs=71.8
Q ss_pred cCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCc-EEEEEecccccCCCCCCCCCccccch
Q 018536 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYK-VEIVIVGDDCALPPPRGIAGRRGLAG 85 (354)
Q Consensus 7 ~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~-v~~v~v~DDva~~~~~~~~gRRGlaG 85 (354)
.|+=|.=|.--++.+|++.. +||=+|-..=.|=.||-.++.|.+++ |++ +-.-+ | |..+
T Consensus 168 qGEP~lYP~l~~lVqalk~~---~~v~vVSmQTng~~L~~~lv~eLeeA-GLdRiNlSv---~-aLDp------------ 227 (414)
T COG2100 168 QGEPLLYPHLVDLVQALKEH---KGVEVVSMQTNGVLLSKKLVDELEEA-GLDRINLSV---D-ALDP------------ 227 (414)
T ss_pred CCCCccchhHHHHHHHHhcC---CCceEEEEeeCceeccHHHHHHHHHh-CCceEEeec---c-cCCH------------
Confidence 57778888888888888776 78888888888999999999988765 432 11111 1 1111
Q ss_pred hhhHHHHHhHHH-HcCCCHHHHHHHHHHHHhhhccccccccccccCC
Q 018536 86 TILVNKIAGAAA-AAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (354)
Q Consensus 86 ~vlv~KiaGAaA-e~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg 131 (354)
|.|=.++ .+-++++.|.++|+.+.+ ..|-|-++|.-+||
T Consensus 228 -----k~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~lPG 267 (414)
T COG2100 228 -----KLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWLPG 267 (414)
T ss_pred -----HHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeecCC
Confidence 1222222 356899999999999998 89999999999999
No 67
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.70 E-value=47 Score=32.00 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHh----------cCCcEEE--EEecccccCCC
Q 018536 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKS----------EGYKVEI--VIVGDDCALPP 73 (354)
Q Consensus 16 ~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~----------~G~~v~~--v~v~DDva~~~ 73 (354)
++-|.+||+.+...++..+|+..=.|=.+|=..|.|.|+. |||+=++ ..|++.||+++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 4568889999988878889999999999999999999987 4555333 36777888875
No 68
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=23.63 E-value=59 Score=26.00 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=30.8
Q ss_pred cCCCCCCCCCeEEEE-EeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 179 TNYVPITRGNRVVLM-INGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 179 r~~~~~~~~d~vvvl-vNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
.+|+....+++++++ |.-.-|-|...--.+++.+.+.|+++.||.+..+.+-
T Consensus 18 ~~ylg~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 18 PTYLGIDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp TTTS--TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CccCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 356666666666554 4444477887888999999999998779988877653
No 69
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=23.37 E-value=1.3e+02 Score=22.67 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=29.5
Q ss_pred hhhHHHHHhHHHHcCCCHHH-----HHHHHHHHHhhh
Q 018536 86 TILVNKIAGAAAAAGLSLAD-----VAAEAKRASEMV 117 (354)
Q Consensus 86 ~vlv~KiaGAaAe~G~~L~e-----v~~~a~~~~~~~ 117 (354)
...+++++|.++.+|.+-++ |..+++.+|++.
T Consensus 13 N~~lf~~a~~~~~~~v~~~~~~~~~v~~~~~~~N~~~ 49 (71)
T PF08708_consen 13 NCTLFRLARRLAYRGVDQEEQFRQEVLSLAQAINSNF 49 (71)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999 999999999874
No 70
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=23.22 E-value=71 Score=25.13 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.5
Q ss_pred ceEEEeeccccccccHHHHHHHHHhcCCc
Q 018536 31 GCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (354)
Q Consensus 31 GvL~iv~NYtGD~lnFgmA~e~a~~~G~~ 59 (354)
-=+++|..|--|+ |.|+|+.-||+
T Consensus 47 ~r~ivVtp~id~~-----a~~~A~~LGIe 70 (70)
T PF07788_consen 47 DRLIVVTPYIDDR-----AKEMAEELGIE 70 (70)
T ss_pred ceEEEEEeecCHH-----HHHHHHHhCCC
Confidence 5689999999999 99999999985
No 71
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=22.43 E-value=1.1e+02 Score=26.26 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.4
Q ss_pred EEEEEeCCC
Q 018536 190 VVLMINGLG 198 (354)
Q Consensus 190 vvvlvNnLG 198 (354)
+.+++|-+|
T Consensus 157 ~~~~~np~g 165 (166)
T cd07404 157 TRVLSNQLG 165 (166)
T ss_pred EEEEecCCC
Confidence 444555544
No 72
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=22.08 E-value=2.3e+02 Score=27.79 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhhcCC--CceEEE---eeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 018536 13 SPPVDSILAGIHAVTGP--MGCLLI---VTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (354)
Q Consensus 13 SPs~~~I~~ai~~v~~~--~GvL~i---v~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva 70 (354)
.++.+++-++++..... +-.+++ +-|.||++....--++.|++.| .++|-|++-
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~----~~li~De~~ 209 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYD----ALVMVDECH 209 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcC----CEEEEECCc
Confidence 46778887788764322 444555 3489999999888888888776 467888884
No 73
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=21.89 E-value=2.7e+02 Score=22.61 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=42.1
Q ss_pred HHHHHHHHHH-HHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccc-ccCCCc
Q 018536 163 VDVVVSHVLK-QILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT-SLDMAG 240 (354)
Q Consensus 163 a~~lv~~ml~-~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~T-Sl~m~G 240 (354)
+.+.+++.++ .|++ ..++.-+.+.|-|.+=--.+..|..-+.+.+.+++.+. .+ ++.|..+- +|+ .-
T Consensus 16 ~~~Av~~Al~spLl~-----~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~--a~---ii~G~~id~~l~-d~ 84 (95)
T PF12327_consen 16 AEEAVEQALNSPLLD-----VDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPD--AN---IIWGASIDEELE-DE 84 (95)
T ss_dssp HHHHHHHHHTSTTST-----S-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTT--SE---EEEEEEE-TTGT-TE
T ss_pred HHHHHHHHHhCcccc-----CChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcC--ce---EEEEEEECCCCC-Ce
Confidence 4456666664 3554 23455566666555433477889999999999988754 33 44565543 332 44
Q ss_pred ceEEEe
Q 018536 241 FSISIM 246 (354)
Q Consensus 241 fSiTll 246 (354)
+++|++
T Consensus 85 i~VtiI 90 (95)
T PF12327_consen 85 IRVTII 90 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 677775
No 74
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.50 E-value=2.5e+02 Score=22.58 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=38.4
Q ss_pred ccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 018536 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (354)
Q Consensus 10 vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva 70 (354)
++..+.......-.+.+ +.+.++|+-.++|.-...--++++|+..|+ ++|.++++-.
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~--~iv~iT~~~~ 98 (139)
T cd05013 42 VVLLSDPHLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGA--KVIAITDSAN 98 (139)
T ss_pred eEEecCHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCC--eEEEEcCCCC
Confidence 33445555555444444 345677777999998888778999999885 4567766543
No 75
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=21.38 E-value=1.7e+02 Score=28.73 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=65.1
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhH
Q 018536 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILV 89 (354)
Q Consensus 11 FaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~g-RRGlaG~vlv 89 (354)
|..|..++|+++++...++.-+|++.+|.+. ..+.....|+ +.+-++.-+.....++..| +.-+.|.+=-
T Consensus 215 f~~p~~k~i~~~i~~~~~~~~ilh~cg~~~~-------~~~~~~~~~~--~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p 285 (338)
T TIGR01464 215 FVLPYLKKIIEEVKARLPNVPVILFAKGAGH-------LLEELAETGA--DVVGLDWTVDLKEARKRVGPGVAIQGNLDP 285 (338)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCcHH-------HHHHHHhcCC--CEEEeCCCCCHHHHHHHhCCCeeEEeCCCh
Confidence 4578999999999885444457777776541 1333333454 4455554444433233344 5699999843
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccc-c-ccccccccCCCCC
Q 018536 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTM-G-VALSVCTLPGQVT 134 (354)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Ti-g-val~~c~~Pg~~~ 134 (354)
. -+ .| +-++|.+.++++.+....- | +.-+.|.+|-..|
T Consensus 286 ~----~l--~g-t~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp 325 (338)
T TIGR01464 286 A----VL--YA-PEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTP 325 (338)
T ss_pred H----Hh--cC-CHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcC
Confidence 2 12 35 7799999999999987531 1 3333477775433
No 76
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=21.08 E-value=2.2e+02 Score=27.16 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.4
Q ss_pred eecCCccC--CC-CHHHHHHHHHhhcCCCceEEEeecccccc--ccHHHHHHHHHhcCCc
Q 018536 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (354)
Q Consensus 5 av~G~vFa--SP-s~~~I~~ai~~v~~~~GvL~iv~NYtGD~--lnFgmA~e~a~~~G~~ 59 (354)
.++||++. +| ..+++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34566677777776678999999986321 1122334555667764
No 77
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=20.97 E-value=3.5e+02 Score=23.75 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEe---ccccCCCCcccccCCCHHHHHHHHHHHHHccc
Q 018536 102 SLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELG---LGIHGEPGAAVADLQPVDVVVSHVLKQILSTE 178 (354)
Q Consensus 102 ~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G---~GIHgEpG~~~~~~~~a~~lv~~ml~~ll~~~ 178 (354)
|-+.|++++.++++-+-++=..-+ |.-...-+|+| +=||. .-++++. .||+..
T Consensus 2 s~~~v~~~~~~i~~~i~~l~S~~d----------~~~~~~~~e~G~~wvWi~D----------N~~~~vR----ALl~~g 57 (132)
T PF14468_consen 2 SEERVKEYADRINEYISELYSKKD----------FLNDDYDREFGNAWVWIHD----------NQSEVVR----ALLQAG 57 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHhccch----------hhcccchhhcCceEEEEec----------CcCHHHH----HHHHcC
Confidence 345677777887777666654333 11122334444 12332 2235555 444432
Q ss_pred cCCCCCCCCCeEEEEEeCCCC-ChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 018536 179 TNYVPITRGNRVVLMINGLGA-TPVMELMIAAGKAVPNLQLEHGLAVER 226 (354)
Q Consensus 179 r~~~~~~~~d~vvvlvNnLG~-ts~lEl~ii~~~v~~~L~~~~gi~v~r 226 (354)
-++..+..|+.+=||+++. -|.=+.-.++.+|.++|..++|+.--+
T Consensus 58 --rV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~y 104 (132)
T PF14468_consen 58 --RVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGY 104 (132)
T ss_pred --ceeeccCceeeeecccccCCCchHHHHHHHHHHHHHHHHHhCcceeE
Confidence 3556677899999999999 555588889999999999999887543
No 78
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=20.81 E-value=4.1e+02 Score=24.15 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=45.8
Q ss_pred CCcccccCCCH-HHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHH----HHHHHHHhhhhhcCCeEEEe
Q 018536 153 PGAAVADLQPV-DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMI----AAGKAVPNLQLEHGLAVERV 227 (354)
Q Consensus 153 pG~~~~~~~~a-~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~i----i~~~v~~~L~~~~gi~v~r~ 227 (354)
||....+-.+. +.+.+.+.+.|+.- .+.+|+++ |. ....|.+- -++++++.|+.. |+-..+.
T Consensus 2 ~~~~~~~~~~~~e~v~~~l~~~I~~g-----~l~pG~~L----~e---~~La~~lgVSRtpVREAL~~L~~e-GLV~~~~ 68 (221)
T PRK11414 2 PGTEKTQHISLTLQVENDLKHQLSIG-----ALKPGARL----IT---KNLAEQLGMSITPVREALLRLVSV-NALSVAP 68 (221)
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHhC-----CCCCCCcc----CH---HHHHHHHCCCchhHHHHHHHHHHC-CCEEecC
Confidence 55544333344 66888889999873 57788884 21 12333333 578999999998 9876666
Q ss_pred eeccccccc
Q 018536 228 YTGSFMTSL 236 (354)
Q Consensus 228 ~vG~~~TSl 236 (354)
..|.+++.+
T Consensus 69 ~~g~~v~~~ 77 (221)
T PRK11414 69 AQAFTVPEV 77 (221)
T ss_pred CCceeecCC
Confidence 667666543
Done!