Query 018536
Match_columns 354
No_of_seqs 191 out of 1194
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1un8_A Dihydroxyacetone kinase 100.0 3E-111 9E-116 866.8 34.4 327 1-353 73-404 (552)
2 3ct4_A PTS-dependent dihydroxy 100.0 3E-107 1E-111 790.0 26.6 261 1-266 70-332 (332)
3 2iu4_A DHA-DHAQ, dihydroxyacet 100.0 3E-107 1E-111 790.4 23.2 263 1-268 66-331 (336)
4 1oi2_A Hypothetical protein YC 100.0 6E-107 2E-111 792.7 24.6 267 1-268 78-365 (366)
5 3nyi_A FAT acid-binding protei 83.1 4.4 0.00015 38.2 8.9 95 12-120 66-165 (297)
6 3pl5_A SMU_165, putative uncha 81.9 4.5 0.00015 38.8 8.5 199 13-240 98-308 (320)
7 3fdj_A DEGV family protein; GU 81.2 6.6 0.00023 36.7 9.2 205 12-245 61-275 (278)
8 3jr7_A Uncharacterized EGV fam 80.6 5 0.00017 37.9 8.3 199 12-238 81-290 (298)
9 3ct6_A PTS-dependent dihydroxy 67.7 8.7 0.0003 32.0 5.6 79 15-119 45-125 (131)
10 1pzx_A Hypothetical protein AP 67.1 19 0.00066 33.6 8.5 209 12-246 63-283 (289)
11 2dt8_A DEGV family protein; fa 65.3 22 0.00075 33.1 8.5 93 12-121 62-157 (280)
12 3b48_A Uncharacterized protein 61.5 17 0.00059 30.1 6.3 77 15-113 50-129 (135)
13 2bz1_A GTP cyclohydrolase II; 59.3 4 0.00014 36.7 2.0 55 4-59 53-143 (196)
14 3egl_A DEGV family protein; al 50.5 21 0.00072 33.2 5.6 206 13-248 44-263 (277)
15 3gx1_A LIN1832 protein; APC633 49.3 1.1E+02 0.0037 25.1 9.3 77 17-116 49-125 (130)
16 3fys_A Protein DEGV; fatty aci 46.2 85 0.0029 29.7 9.2 190 12-240 96-306 (315)
17 3djh_A Macrophage migration in 44.6 12 0.00041 29.8 2.5 40 190-229 57-96 (114)
18 3lup_A DEGV family protein; PS 43.8 76 0.0026 29.4 8.3 195 12-246 65-282 (285)
19 4dh4_A MIF; trimer, isomerase; 41.8 12 0.0004 29.8 2.0 40 190-229 58-97 (114)
20 1uiz_A MIF, macrophage migrati 41.1 17 0.00058 28.7 2.9 42 188-229 56-97 (115)
21 1mgp_A Hypothetical protein TM 41.0 49 0.0017 31.4 6.5 196 12-240 89-300 (313)
22 2os5_A Acemif; macrophage migr 39.4 21 0.00073 28.4 3.2 42 188-229 56-97 (119)
23 1hfo_A Migration inhibitory fa 39.3 16 0.00055 28.6 2.5 40 190-229 57-96 (113)
24 3b64_A Macrophage migration in 39.1 15 0.00051 28.9 2.2 41 189-229 57-97 (112)
25 3fwu_A Macrophage migration in 37.6 16 0.00053 30.3 2.2 41 190-230 79-119 (133)
26 2yxd_A Probable cobalt-precorr 37.3 1.1E+02 0.0038 24.4 7.5 56 3-66 102-157 (183)
27 2xcz_A Possible ATLS1-like lig 32.7 20 0.00068 28.2 2.0 42 188-229 56-97 (115)
28 3fwt_A Macrophage migration in 32.2 14 0.00048 30.6 1.0 41 190-230 79-119 (133)
29 2lnd_A De novo designed protei 31.5 82 0.0028 24.7 5.2 50 150-212 24-73 (112)
30 3t5s_A Gilaa.00834.A, macropha 31.3 15 0.00051 30.5 1.0 41 189-229 78-118 (135)
31 2wkb_A Macrophage migration in 29.6 20 0.00068 28.9 1.5 40 190-229 58-97 (125)
32 3ihu_A Transcriptional regulat 28.7 81 0.0028 27.4 5.5 64 161-237 16-83 (222)
33 3lub_A Putative creatinine ami 22.9 1.2E+02 0.004 27.7 5.6 59 151-225 83-142 (254)
34 2g7z_A Conserved hypothetical 22.5 68 0.0023 29.7 4.0 94 12-122 66-163 (282)
35 2q8u_A Exonuclease, putative; 21.8 49 0.0017 30.6 2.8 51 5-57 66-122 (336)
36 1byr_A Protein (endonuclease); 21.7 1E+02 0.0035 24.7 4.5 51 10-64 7-60 (155)
37 1uf3_A Hypothetical protein TT 21.7 87 0.003 26.2 4.2 38 5-42 37-76 (228)
No 1
>1un8_A Dihydroxyacetone kinase; transferase; HET: MYY; 2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A*
Probab=100.00 E-value=2.6e-111 Score=866.82 Aligned_cols=327 Identities=45% Similarity=0.692 Sum_probs=299.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++ +||
T Consensus 73 ml~aav~G~vFaSPs~~~i~~ai~a~~~g~Gvl~ivkNYtGD~lnF~~A~e~a~~~gi~v~~v~v~DDva~~~~---~~R 149 (552)
T 1un8_A 73 MLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDN---KHP 149 (552)
T ss_dssp SBSEEEEEEETSCCCHHHHHHHHHHHCCTTCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCTTC---SSC
T ss_pred ccceeeecCcCCCCCHHHHHHHHHhhcCCCCEEEEecccHHHHhhHHHHHHHHHhcCCcEEEEEecCcccCCCC---CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864 899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCC-CCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f-~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+||+||+|+||+||+++++++++|++||||+|++||+|+++|+| +|++||||||||||||||++|.+
T Consensus 150 RGvaGtv~v~KiaGAaAe~G~~L~ev~~~a~~~~~~~~s~gval~~ctvP~~~~~f~~l~~~e~E~G~GiHGEpG~~~~~ 229 (552)
T 1un8_A 150 RGIAGTILVHKIAGYFAERGYNLATVLREAQYAASNTFSLGVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVID 229 (552)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTEEEEEEEEECCCCSSCCSSSCCBCTTCEEETCCTTCCCCSEEES
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhceEEEEEcCCccCCCCCCCcccCCCCceEeccccCCCCCccCCC
Confidence 99999999999999999999999999999999999999999999999999998999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec--ccccccC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG--SFMTSLD 237 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG--~~~TSl~ 237 (354)
++|+++++++|+++|+++ ++++ |+|+||||||||||.+|||++++++.++|+++ | +|+|+| +||||||
T Consensus 230 ~~~a~~~~~~l~~~ll~~----~~~~--~~v~~lvN~lG~t~~~El~i~~~~v~~~L~~~-g---~~~~vG~~~~~Tsld 299 (552)
T 1un8_A 230 TQNSAQVVNLMVDKLLAA----LPET--GRLAVMINNLGGVSVAEMAIITRELASSPLHS-R---IDWLIGPASLVTALD 299 (552)
T ss_dssp CCBHHHHHHHHHHHHHHH----SCSS--CCEEEEEEECBCSCHHHHHHHHHHHHTSTTGG-G---EEEEEEEECSSCCTT
T ss_pred CCCHHHHHHHHHHHHHhh----CCCc--CcEEEEEeCCCCCCHHHHHHHHHHHHHHHHHc-C---CeeeeCCccccCccC
Confidence 999999999999999986 7776 99999999999999999999999999999887 8 999999 9999999
Q ss_pred CCcceEEEecccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCcccCCCcccccchHHHHHHHHHHH
Q 018536 238 MAGFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIP--VPMPPSHSMKSDESLGRPLQLSQQGHVLEVTIEAAA 315 (354)
Q Consensus 238 m~GfSiTll~ld~~l~~lLdaP~~a~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (354)
|+|||||||++|+++++|||+||++|+||+... +.. .+ .+... . .. . ...+.. + ..+++||+.+|
T Consensus 300 m~G~SiTll~ld~el~~~ldap~~~~~~~~~~~---~~~-~~~~~~~~~-~-~~--~-~~~~~~---~-~~l~~~l~~~a 366 (552)
T 1un8_A 300 MKGFSLTAIVLEESIEKALLTEVETSNWPTPVP---PRE-ITCVVSSHA-S-AR--V-EFQPSA---N-ALVAGIVELVT 366 (552)
T ss_dssp BEEEEEEEEECCTTHHHHHHSCCCCSSCCCCBC---CCC-CCEECCCCC-C-CS--C-CCCCBC---C-HHHHHHHHHHH
T ss_pred CCcceEEeecCCHHHHHHhcCCCCCCCCCCccC---ccc-ccccccccc-c-cc--C-CCCcch---h-HHHHHHHHHHH
Confidence 999999999999999999999999999987531 100 00 00000 0 00 0 011111 2 56899999999
Q ss_pred HHHHHhHhhhhhhcccCCCCcchhhHHHHHHHHHHhhc
Q 018536 316 EAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKK 353 (354)
Q Consensus 316 ~~ii~~e~~Lt~LD~~iGDGDhG~tl~rGa~av~~~l~ 353 (354)
+.|+++|++||+||+.+||||||+||.+||+++.+.++
T Consensus 367 ~~l~~~~d~Ln~LD~~VGDGD~GtNM~~G~~av~~~l~ 404 (552)
T 1un8_A 367 ATLSDLETHLNALDAKVGDGDTGSTFAAAAREIASLLH 404 (552)
T ss_dssp HHHHHTHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998875
No 2
>3ct4_A PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DHAK; dihydroxyacetone kinase subunit, tranferase; 2.50A {Lactococcus lactis subsp}
Probab=100.00 E-value=3.3e-107 Score=790.04 Aligned_cols=261 Identities=36% Similarity=0.588 Sum_probs=247.6
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++.+++||
T Consensus 70 MLdAAv~G~VFaSPs~~qi~~aikav~~g~GvL~ivkNYtGDvlNF~mAaE~a~~eGi~v~~VvV~DDvA~~~~~~~~gR 149 (332)
T 3ct4_A 70 MLSAAVCGAIFTSPTPDQIYEAIKSADEGAGVLLIIKNYLGDVMNFEMAREMAEMEEIKVEQIIVDDDIAVENSLYTQGR 149 (332)
T ss_dssp SBSEEEEEEETCCCCHHHHHHHHHHHCCSSCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSSSSCTTCSSS
T ss_pred ccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHhhcHHHHHHHHHhcCCcEEEEEeCCcccCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+|||||+|+||+||+++|+++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 150 RGvAGtvlv~KIaGAaAe~G~~L~ev~~~a~~~~~~~~SiGval~~ctvP~~g~p~f~l~~~emE~G~GIHGEpG~~r~~ 229 (332)
T 3ct4_A 150 RGVAGTVLVHKILGAAAHQEASLDEIKDLADKVVKNIKTIGLALSAATVPEVGKPGFVLDDNEIEYGVGIHSEPGYRREK 229 (332)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTEEEEEEESSCCCCC----------CCEEEETCCTTSCCCSEEEE
T ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECCCcCCCCCCCCCCccCCCceEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 018536 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m~ 239 (354)
++|+++++++|+++|+++ ++++++|+++||||||||||.+|||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 230 ~~~a~el~~~m~~~ll~~----~~~~~gd~v~vlVNgLG~t~~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldM~ 304 (332)
T 3ct4_A 230 MKTSYELATELVGKLKEE----FKFEAGQKYGILVNGMGATPLMEQFIFMNDVAKLLTEE-NIEILFKKVGNYMTSIDMA 304 (332)
T ss_dssp CCCHHHHHHHHHHHHHHH----HTCCTTCEEEEEEEECBSSCHHHHHHHHHHHHHHHHTT-TCEEEEEEEECSSCCTTBC
T ss_pred CCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEECCCCcCHHHHHHHHHHHHHHHHHC-CCeEEEEEeeccccccCCC
Confidence 999999999999999986 78889999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEecccH-HHHHhhcCcCCCCCCC
Q 018536 240 GFSISIMKADE-VILKHLDATTKAPHWP 266 (354)
Q Consensus 240 GfSiTll~ld~-~l~~lLdaP~~a~~w~ 266 (354)
||||||+++|+ ++++|||+||++|+|+
T Consensus 305 G~SiTll~ldd~el~~lldaP~~tp~w~ 332 (332)
T 3ct4_A 305 GLSLTMIKLEDDQWLKNLNEDVKTISWG 332 (332)
T ss_dssp EEEEEEEECCSHHHHHHHTSCCBCSCC-
T ss_pred ccEEEEEECCHHHHHHHhCCCCCCCCCC
Confidence 99999999999 9999999999999994
No 3
>2iu4_A DHA-DHAQ, dihydroxyacetone kinase; transferase, CO-activa kinase; HET: HIQ; 1.96A {Lactococcus lactis} PDB: 2iu6_A
Probab=100.00 E-value=3.3e-107 Score=790.37 Aligned_cols=263 Identities=32% Similarity=0.493 Sum_probs=257.4
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++.+++||
T Consensus 66 MLdAAv~G~VFaSPs~~qi~~aikav~~g~GvL~ivkNYtGDvlNF~mAaE~a~~eGi~v~~VvV~DDvA~~~~~~~~gR 145 (336)
T 2iu4_A 66 MLAAAVTGPLFIPPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEAIKEARTEGIDVRYIVSHDDISVNAYNFHKRH 145 (336)
T ss_dssp SBSEEEEEEETSCCCHHHHHHHHHHHCSSSCEEEEEESCHHHHHHHHHHHHHHHHTTCCEEEEEECCBCHHHHHTCCSCC
T ss_pred ccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHhhcHHHHHHHHHhCCCcEEEEEecCceecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCCCCCCCCCCCCceEEeccccCCCCcccccC
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~f~l~~~e~E~G~GIHgEpG~~~~~~ 160 (354)
||+|||||||||+|||||+|+||+||+++|+++++|++||||+|++||+|+.+|+|+|++||||||||||||||++|.++
T Consensus 146 RGvAGtvlv~KIaGAaAe~G~~L~ev~~~a~~~~~~~~SiGvaL~~ctvP~~~p~F~l~~~emE~G~GIHGEpG~~r~~~ 225 (336)
T 2iu4_A 146 RGVAGTILLHKILGAFAKEGGSIDEIEQLALSLSPEIYTLGVALAPVHFPHQKTSFVLAEDEVSFGIGIXGEPGYRVEKF 225 (336)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGEEEEEEEEECCEETTTEESSCCCTTEEEESCCCCCCCCSEEEEC
T ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECCCccCCCCCCCCccCCCceEecccccCCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCC--CCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 018536 161 QPVDVVVSHVLKQILSTETNYVPIT--RGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (354)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~r~~~~~~--~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG~~~TSl~m 238 (354)
+|+++++++|+++|+++ ++++ ++|+++||||||||||.+|||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 226 ~~a~el~~~m~~~ll~~----l~~~~~~gd~v~vlVNgLG~t~~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSLdM 300 (336)
T 2iu4_A 226 EGSERIAIELVNKLKAE----INWQKKANKNYILLVNGLGSTTLMELYSFQYDVMRLLELE-GLSVKFCKVGNLMTSCDM 300 (336)
T ss_dssp CCHHHHHHHHHHHHHHH----HCGGGCSCCEEEEEEEECBSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEECSSCCTTB
T ss_pred CCHHHHHHHHHHHHHhh----CccccCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHHC-CCeEEEEeeecccCccCC
Confidence 99999999999999986 7777 8999999999999999999999999999999887 999999999999999999
Q ss_pred CcceEEEecccH-HHHHhhcCcCCCCCCCCC
Q 018536 239 AGFSISIMKADE-VILKHLDATTKAPHWPVG 268 (354)
Q Consensus 239 ~GfSiTll~ld~-~l~~lLdaP~~a~~w~~~ 268 (354)
+|||||||++|+ ++++|||+||++|+|+..
T Consensus 301 ~G~SiTll~ldd~el~~lldaP~~tpa~~~~ 331 (336)
T 2iu4_A 301 SGISLTLCSVKDPKWLDYLNVPTGAFAWLEH 331 (336)
T ss_dssp EEEEEEEEECCSTHHHHHHHSCCCCTTCCCC
T ss_pred CccEEEEEECCHHHHHHHhcCCCCCcccchh
Confidence 999999999999 999999999999999754
No 4
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=100.00 E-value=6e-107 Score=792.73 Aligned_cols=267 Identities=39% Similarity=0.624 Sum_probs=251.0
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 018536 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (354)
Q Consensus 1 mL~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gR 80 (354)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++.+++||
T Consensus 78 MLdaAv~G~VFaSPs~~qi~~ai~av~~g~GvL~ivkNYtGDvlNF~mA~E~a~~eGi~v~~Vvv~DDvAv~~~~~~~gR 157 (366)
T 1oi2_A 78 MLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGR 157 (366)
T ss_dssp SBSEEEEEEETSCCCHHHHHHHHHHHCCSSCEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEECCBCSCBSCTTCSSB
T ss_pred ccceeeecccCCCCCHHHHHHHHHhhcCCCCEEEEeCCcHHHhhcHHHHHHHHHhcCCcEEEEEecCceecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccccccccccCC-CCCCCCCCCCceEEeccccCCCCccccc
Q 018536 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (354)
Q Consensus 81 RGlaG~vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigval~~c~~Pg-~~~~f~l~~~e~E~G~GIHgEpG~~~~~ 159 (354)
||+|||||||||+|||||+|+||+||+++|+++++|++||||||++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 158 RGvAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~SiGvaL~~ctvP~~g~p~F~l~~~emE~G~GIHGEPG~~r~~ 237 (366)
T 1oi2_A 158 RGVANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 237 (366)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTEEEEEEEEECC-----------CCTTEEEETCCTTSCCCSEEEE
T ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECCCcCCCCCCCCCCccCCCceEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcc--------------------ccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhh
Q 018536 160 LQPVDVVVSHVLKQILST--------------------ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219 (354)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~--------------------~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~ 219 (354)
++|+++++++|+++|+++ +|.|++++++|+|+||||||||||.+|||++++++.++|+++
T Consensus 238 ~~sa~elv~~m~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~vLVNgLG~T~~~El~iv~~~v~~~L~~~ 317 (366)
T 1oi2_A 238 FSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQA 317 (366)
T ss_dssp CCCHHHHHHHHHHHHHHSCCEEEEEEEEETTTTEEEEEEEEECCCCTTCEEEEEEEECBSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcccccccccccccccccccccccccCCCCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHHC
Confidence 999999999999999986 155789999999999999999999999999999999999888
Q ss_pred cCCeEEEeeecccccccCCCcceEEEecccHHHHHhhcCcCCCCCCCCC
Q 018536 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (354)
Q Consensus 220 ~gi~v~r~~vG~~~TSl~m~GfSiTll~ld~~l~~lLdaP~~a~~w~~~ 268 (354)
||+|+|+|+|+|||||||+|||||||++|+++++|||+||++|+||++
T Consensus 318 -gi~v~r~~vG~y~TSLdM~G~SiTLl~lddel~~lldaP~~tpa~~~g 365 (366)
T 1oi2_A 318 -GLTIERNLIGAYCTSLDMTGFSITLLKVDDETLALWDAPVHTPALNWG 365 (366)
T ss_dssp -TCEEEEEEEECSSCCTTBEEEEEEEEEECHHHHHHHHSCEESSSCEEC
T ss_pred -CCeEEEEeeecccCCCCCCccEEEEEecCHHHHHHhCCCCCCCcCCCC
Confidence 999999999999999999999999999999999999999999999874
No 5
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=83.09 E-value=4.4 Score=38.21 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHhh-cCCCceEEEe--eccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCccccchh
Q 018536 12 ASPPVDSILAGIHAV-TGPMGCLLIV--TNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRRGLAGT 86 (354)
Q Consensus 12 aSPs~~~I~~ai~~v-~~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRRGlaG~ 86 (354)
+.||+.++.++.+.. ..+..||+|- ..-+|=.=+.-+|+++.+.+ +.+|.+| |- +..-.|.
T Consensus 66 Sqps~~~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~~~~~I~Vi---DS-----------~~~s~g~ 131 (297)
T 3nyi_A 66 SLPSVESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVI---DS-----------KQNTVTQ 131 (297)
T ss_dssp ECCCHHHHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHCTTCCEEEE---EC-----------SCCHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEE---eC-----------CchHHHH
Confidence 358999999998665 4557788776 55677777888888887554 4454433 21 2233455
Q ss_pred hhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccc
Q 018536 87 ILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTM 120 (354)
Q Consensus 87 vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Ti 120 (354)
-++..-|..++++|.|++||.+..++..+++.+.
T Consensus 132 g~~v~~A~~l~~~G~s~~eI~~~l~~~~~~~~~~ 165 (297)
T 3nyi_A 132 ALLIDQFVRMLEDGLSFEQAMSKLDALMASARIF 165 (297)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEE
Confidence 5555558889999999999999999999887765
No 6
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=81.93 E-value=4.5 Score=38.82 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHhh-cCCCceEEEe--eccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 13 SPPVDSILAGIHAV-TGPMGCLLIV--TNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 13 SPs~~~I~~ai~~v-~~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
.||+.++.++.+.. ..+..||+|- ..-+|=.=+.-+|+++...+ +.+|.+| |- +..-.|.-
T Consensus 98 qPs~~~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~~~~~I~Vi---DS-----------~~~s~g~g 163 (320)
T 3pl5_A 98 QVNVGQFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIV---DT-----------LAATGGEG 163 (320)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHCTTCCEEEE---EC-----------CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhCCCCeEEEE---cC-----------CchHHHHH
Confidence 58999999998654 4456787775 45677777788888887654 4444333 21 22334566
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccccCCCC-CCCCCCCCceEEeccccCC-CCc--ccccCC
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQV-TSDRLGPGKMELGLGIHGE-PGA--AVADLQ 161 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~~Pg~~-~~f~l~~~e~E~G~GIHgE-pG~--~~~~~~ 161 (354)
++..-|-.++++|.+++||.+..++..+++.+.=+- |..=.-=||= +.-.+=-+-+-|=-=+|=+ -|. -..+..
T Consensus 164 ~lv~~Aa~l~~~G~s~eeI~~~le~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~iG~lL~IKPIl~~~~dG~l~~~~KvR 243 (320)
T 3pl5_A 164 YLAMLAAQAREEGKSLKETKELILDVGPRLRTFFLVDNLYHLMRGGRLSKTSAIVGSLVNIKPLLWLDASGKLVPIAKLR 243 (320)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHGGGEEEEEECSCSHHHHHHTCCC--------CTTEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECChHHHHhCCCccHHHHHHHhhhCceEEEEEccCCeEEEEeeec
Confidence 666667889999999999999999999888765331 1100000110 0000000001111111222 342 234566
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeecccccccCCCc
Q 018536 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTGSFMTSLDMAG 240 (354)
Q Consensus 162 ~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~vG~~~TSl~m~G 240 (354)
+.+..+++|++.+.+. .. ..+ +.+.+. + . .|. +.++.+.|+++++. .+.-..+|+-+.+==.+|
T Consensus 244 g~kka~~~lv~~~~~~----~~---~~~-v~I~h~-~-~--~e~---a~~l~~~l~~~~~~~~i~i~~ig~vIg~H~GpG 308 (320)
T 3pl5_A 244 GRKKGMKEMLKRATAD----VA---HDT-AVVAYA-N-D--SEA---AENLKEQLLANEKIKNVVTLPLGPVISTHVGPN 308 (320)
T ss_dssp SHHHHHHHHHHHHTSS----CC---SSE-EEEEES-S-C--HHH---HHHHHHHHHTSTTCCEEEEEECCHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHh----cC---CCE-EEEEeC-C-C--HHH---HHHHHHHHHhhcCCCcEEEEEeccEEEEEecCC
Confidence 6778888999888653 22 233 334443 2 2 232 45666777777664 444455666555433443
No 7
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=81.22 E-value=6.6 Score=36.66 Aligned_cols=205 Identities=11% Similarity=0.102 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 018536 12 ASPPVDSILAGIHAVTGPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv 89 (354)
+.||+.++.++.+ +...||+|- ..-+|=.=+.-+|+++...+--+.++.+|+- |..-.|.-++
T Consensus 61 Sqps~~~~~~~f~---~~~~ii~i~iSs~LSGTy~sA~~aa~~~~ee~~~~~I~ViDS------------~~~s~g~g~~ 125 (278)
T 3fdj_A 61 ACPGIDAWLEAFG---DDDEIFVVTITAGMSGTYNSAMAARAVYLEEHPQAKVRVIDS------------KSTGPQMRII 125 (278)
T ss_dssp ECCCHHHHHHHHT---TCSEEEEEESCTTTCSHHHHHHHHHHHHHTTCTTCEEEEEEC------------SSCTHHHHHH
T ss_pred cCCCHHHHHHHHh---cCCcEEEEECCCcHhHHHHHHHHHHHHHHhhCCCCeEEEEcC------------CchhHHHHHH
Confidence 3488888888886 455677665 4566766678888888765522233333332 2233566666
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccccCCCCCC-CCCCCCceEEeccccC-CCCc--ccccCCCH
Q 018536 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTS-DRLGPGKMELGLGIHG-EPGA--AVADLQPV 163 (354)
Q Consensus 90 ~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~~Pg~~~~-f~l~~~e~E~G~GIHg-EpG~--~~~~~~~a 163 (354)
..-|-.++++|.|++||.+..++..+++.+.=+- |..=.-=||=.. -.+=-+-+-|=-=+|= +-|. -..+..+.
T Consensus 126 v~~A~~~~~~G~s~~eI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~l~~~~KvRg~ 205 (278)
T 3fdj_A 126 LEQLQQMIEEGKKFEEIDGAIDAYMQKTRLFCSLKSLHNLAQNGRVSKVVASAAEVLGISVIGTASSHGTLEAIGKCRGD 205 (278)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTTEEEEEEESCCHHHHHTTSSCHHHHHGGGSTTEEEEEEECTTSSEEEEEEEESH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcceEEEEECChHHHHHCCcchHHHHHHHHhhCcEEEEEEccCCeEEEeeeecCH
Confidence 6777889999999999999999999887765331 111111111000 0000000011111221 3342 23455566
Q ss_pred HHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcC-CeEEEeeeccccc-ccCCCcc
Q 018536 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG-LAVERVYTGSFMT-SLDMAGF 241 (354)
Q Consensus 164 ~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~g-i~v~r~~vG~~~T-Sl~m~Gf 241 (354)
+..+++|++.+.+. .. ...++. +.+. .. . |. +.++.+.|+++++ .++.-..+|.-++ =.+-.|+
T Consensus 206 kka~~~l~~~~~~~-----~~-~~~~v~-i~h~--~~-~-e~---a~~l~~~l~~~~~~~~i~i~~~g~vi~~h~G~gal 271 (278)
T 3fdj_A 206 KKLLVKLQALLDDA-----GY-EGGKLR-ICHV--EN-E-AL---ADKIADMIKQAYGTTDVCVYKAGGLCSYYAERGGI 271 (278)
T ss_dssp HHHHHHHHHHHHHH-----TC-CSCCEE-EEES--SC-H-HH---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHHHh-----CC-CCcEEE-EEec--CC-H-HH---HHHHHHHHHHhCCCCcEEEEEeCcEEEEEECCCeE
Confidence 67778888877653 11 123443 3332 12 2 22 3445555555554 3455555665554 3455555
Q ss_pred eEEE
Q 018536 242 SISI 245 (354)
Q Consensus 242 SiTl 245 (354)
.|..
T Consensus 272 ~i~~ 275 (278)
T 3fdj_A 272 ILSC 275 (278)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 8
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=80.63 E-value=5 Score=37.93 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEe--eccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 12 ASPPVDSILAGIHAVTGPMGCLLIV--TNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~--G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
+.||+.++.++.+. ....||+|- ..-+|=.=+.-+|+++...+ +.+|. +|+- |.--.|.-
T Consensus 81 Sqps~~~~~~~f~~--~~~~Ii~i~iSs~LSGTy~sA~~Aa~~~~e~~~~~~I~--ViDS------------~~~s~g~g 144 (298)
T 3jr7_A 81 SCPSPERYMESYHC--DAERIYVVTLSAELSGSYNSAVLGKNLYEEEYGEKQIH--VFNS------------RSASVGET 144 (298)
T ss_dssp ECCCHHHHHHHHCS--SCSEEEEEESCTTTCSHHHHHHHHHHHHHHHHCCCEEE--EEEC------------SSCTHHHH
T ss_pred CCCCHHHHHHHHHh--cCCeEEEEECCcchhHHHHHHHHHHHHHHhhCCCCeEE--EECC------------CchhHHHH
Confidence 35899999998884 556677665 45677666788888887654 33433 3322 22234555
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccccCCC-CCCCCCCCCceEEeccc-cCCCCc--ccccCC
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQ-VTSDRLGPGKMELGLGI-HGEPGA--AVADLQ 161 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~~Pg~-~~~f~l~~~e~E~G~GI-HgEpG~--~~~~~~ 161 (354)
++..-|-.++++|.|++||.+..++..+++.+.=+- |..=.-=|| .+.-.+=-+-+-|=-=+ +.+-|. -..+..
T Consensus 145 ~lv~~Aa~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~l~~~~KvR 224 (298)
T 3jr7_A 145 LIALKVQQCEKAGMTFEEVVESVECYIEEQHTYFVLENLDTLRKNGRLTGIKSLVAGALNIKPIMGSTPQGTICQKEKAR 224 (298)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCEEEECSCCHHHHHTTCSTTCCC--CCCTTEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhCeEEEEeCChHHHHhCCeehHHHHHHHhhcCcEEEEEEccCCeEEEeeecC
Confidence 666667789999999999999999999988775331 111111121 01100111112222223 234453 235666
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeecccccccCC
Q 018536 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTGSFMTSLDM 238 (354)
Q Consensus 162 ~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~vG~~~TSl~m 238 (354)
+-+..+++|++.+.+. .. +.....+.+.+. + .+ |. +.++.+.|+++++. ++.-..+|+.+.+--.
T Consensus 225 g~kka~~~l~~~~~~~----~~-~~~~~~v~I~h~-~-~~--e~---a~~l~~~l~~~~~~~~i~i~~~g~vig~H~G 290 (298)
T 3jr7_A 225 GMKKALVKMADCVAAD----VV-NAGDKILAIAHC-N-CE--ER---AKEVQRLLKERFAVKSSFIVDTSGISTVYAN 290 (298)
T ss_dssp SHHHHHHHHHHHHHHH----CC-SGGGCEEEEEES-S-CH--HH---HHHHHHHHHHHCCCSEEEEEECCHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH----hc-cCCCcEEEEEeC-C-CH--HH---HHHHHHHHHhhcCCCcEEEEEEccEEEEEeC
Confidence 6777888888888664 21 112233333432 2 22 22 34555666666654 4555566766554333
No 9
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=67.66 E-value=8.7 Score=32.02 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=53.4
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 018536 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (354)
Q Consensus 15 s~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~KiaG 94 (354)
..++|.++|+.++ +.|||+++== -|=.+|-.++.++.. -+|+++ ..| +|.-..-
T Consensus 45 ~~~~i~~ai~~~~-~dgVlvltDL-Ggsp~N~~~al~~~~---~~v~vi------NlP---------------mvega~~ 98 (131)
T 3ct6_A 45 SFDRVMNAIEENE-ADNLLTFFDL-GSARMNLDLVSEMTD---KELTIF------NVP---------------LIEGAYT 98 (131)
T ss_dssp CHHHHHHHHHHSS-CSEEEEEESS-GGGHHHHHHHHHTCS---SEEEEC------CSC---------------HHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeC-CCChHHHHHHHHhcC---CCEEEE------Ehh---------------HHHHHHH
Confidence 4789999999988 6899988744 677788777777533 256554 222 3433333
Q ss_pred H--HHHcCCCHHHHHHHHHHHHhhhcc
Q 018536 95 A--AAAAGLSLADVAAEAKRASEMVGT 119 (354)
Q Consensus 95 A--aAe~G~~L~ev~~~a~~~~~~~~T 119 (354)
| .+..|.+++|+.+.+..+..+-||
T Consensus 99 aa~~~~~~~~l~el~~~~~~~~~~~~~ 125 (131)
T 3ct6_A 99 ASALLEAGATFEAIKEQLEKMLIEKRS 125 (131)
T ss_dssp HHHHHHTTCCHHHHHHHHGGGCCCCCC
T ss_pred HHHHhhcCCCHHHHHHHHHHHHhCccc
Confidence 3 246799999998888776555443
No 10
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=67.12 E-value=19 Score=33.59 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=108.7
Q ss_pred CCCCHHHHHHHHHhh-cCCCceEEEee--ccccccccHHHHHHHHHh--cCCcEEEEEecccccCCCCCCCCCccccchh
Q 018536 12 ASPPVDSILAGIHAV-TGPMGCLLIVT--NYTGDRLNFGLAAEQAKS--EGYKVEIVIVGDDCALPPPRGIAGRRGLAGT 86 (354)
Q Consensus 12 aSPs~~~I~~ai~~v-~~~~GvL~iv~--NYtGD~lnFgmA~e~a~~--~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~ 86 (354)
+.||+.++.++.+.. ..+..||+|-- .-+|=.=+.-+|+++... .+.+|. +| | -|..-.|.
T Consensus 63 Sqps~~~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~ee~~~~~I~--Vi-D-----------S~~~s~g~ 128 (289)
T 1pzx_A 63 AQPSPLAMKELFLPYAKENRPCLYIAFSSKLSGTYQTAMAVRSELLDEYPEFRLT--II-D-----------SKCASLGQ 128 (289)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEECCTTTCSHHHHHHHHHHHHHHHSTTCCEE--EE-E-----------CCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCCchhHHHHHHHHHHHhhHhhCCCCeEE--EE-c-----------CchhhHHH
Confidence 458999999998665 44466777652 345555566777777543 244433 22 2 12333566
Q ss_pred hhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccccCCCC-CCCCCCCCceEEeccccCCCCc--ccccCC
Q 018536 87 ILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQV-TSDRLGPGKMELGLGIHGEPGA--AVADLQ 161 (354)
Q Consensus 87 vlv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~~Pg~~-~~f~l~~~e~E~G~GIHgEpG~--~~~~~~ 161 (354)
-++..-|-.++++|.|++||.+..++..+++++.=+- |..=.-=||= +.-.+=-+-+-|=-=+|=+-|. -..+..
T Consensus 129 g~~v~~A~~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPil~~~~G~l~~~~KvR 208 (289)
T 1pzx_A 129 GLAVMKAVELAKQNTPYNLLCETIESYCRHMEHIFTVDNLDYLARGGRISKTAAAFGGLLNIKPLLHVEDGALIPLEKWR 208 (289)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTEEEEEECSCHHHHHHHTSCC----------CEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCEEEEEeCCHHHHHHCCCccHHHHHHHHhhCceEEEEEECCEEEEeeccC
Confidence 6666777888999999999999999999988776431 1111110110 0000000001111111111242 234556
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcC-CeEEEeeecccccccCCCc
Q 018536 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG-LAVERVYTGSFMTSLDMAG 240 (354)
Q Consensus 162 ~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~g-i~v~r~~vG~~~TSl~m~G 240 (354)
+.+..+++|++.+.+. .. +.....+.+... + . .| -+.++.+.|+++++ .++....+|+-+.+-=.+|
T Consensus 209 g~kka~~~l~~~~~~~----~~-~~~~~~v~i~h~-~-~--~e---~a~~l~~~l~~~~~~~~i~i~~~g~vig~H~Gpg 276 (289)
T 1pzx_A 209 GRKKVLKRMVELMGER----GD-DLQKQTIGISHA-D-D--EE---TALELKQMIEETHGCTRFFLSDIGSAIGAHAGPG 276 (289)
T ss_dssp SHHHHHHHHHHHHHHH----CS-SGGGSEEEEEES-S-C--HH---HHHHHHHHHHHHTCCCEEEEEECCHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHH----hc-cCCCeEEEEEEC-C-C--HH---HHHHHHHHHHhhCCCCcEEEEEeccEEEEEeCCC
Confidence 6677778888887653 11 111223333332 2 2 22 23455566666554 3455555676665544444
Q ss_pred -ceEEEe
Q 018536 241 -FSISIM 246 (354)
Q Consensus 241 -fSiTll 246 (354)
+.|..+
T Consensus 277 ~igi~~~ 283 (289)
T 1pzx_A 277 TIALFFL 283 (289)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 444443
No 11
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=65.26 E-value=22 Score=33.06 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHhh-cCCCceEEEee--ccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 018536 12 ASPPVDSILAGIHAV-TGPMGCLLIVT--NYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (354)
Q Consensus 12 aSPs~~~I~~ai~~v-~~~~GvL~iv~--NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vl 88 (354)
+.||+.++.++.+.. ..+..||+|-- .-+|=.=+.-+|+++ ...+| .+| | -+..-.|.-+
T Consensus 62 Sqps~~~~~~~f~~l~~~~~~ii~i~lSs~LSGTy~sA~~aa~~---~~~~I--~Vi-D-----------S~~~s~g~g~ 124 (280)
T 2dt8_A 62 SQPSPEDFARVYREALEEADHVLSLHISGKLSGTVQSAELAAQE---FPGRV--TVV-D-----------TQAASLGVGM 124 (280)
T ss_dssp ECCCHHHHHHHHHHHTTSCSEEEEEESCTTTCTHHHHHHHHHTT---STTSE--EEE-E-----------CSCCTHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCCcHhHHHHHHHHHHHh---CCCCE--EEE-C-----------CchhHHHHHH
Confidence 358999999999776 34455666542 223322233333322 12122 222 2 1223356666
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccc
Q 018536 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMG 121 (354)
Q Consensus 89 v~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tig 121 (354)
+..-|-.++++|.|++||.+..++..+++++.=
T Consensus 125 ~v~~a~~l~~~G~s~eei~~~l~~~~~~~~~~f 157 (280)
T 2dt8_A 125 MVLRAKELLEEGQSLEAVLAELERLRRDHFVRF 157 (280)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHSCEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEE
Confidence 667778889999999999999999998887653
No 12
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural genomics, PSI-2, PROT structure initiative; 2.21A {Enterococcus faecalis} SCOP: c.54.1.2
Probab=61.49 E-value=17 Score=30.07 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 018536 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (354)
Q Consensus 15 s~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~-G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~Kia 93 (354)
...+|.++|+.++.+.|||+++== -|=.+|-.+|.+....+ .-+|+++ ..| +|.+..
T Consensus 50 ~~~~i~~ai~~~~~~dgVlvltDL-Ggsp~N~~~~~~~~~~~~~~~v~vv------NlP---------------mv~~~l 107 (135)
T 3b48_A 50 DPMKIIDTINEADSDREFLIFADL-GSAVLSSELAFDMLEEDQQKHYHLV------DAP---------------LVEGAF 107 (135)
T ss_dssp CHHHHHHHHHHSCSSCEEEEEECS-HHHHHHHHHHHHHSCHHHHTTEEEC------CSC---------------HHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeC-CCChhHHHHHHHHhcccccCCEEEE------EHH---------------HHHHHH
Confidence 578999999999999999998844 66667877887765432 2256653 222 565554
Q ss_pred hHH--HHcCCCHHHHHHHHHHH
Q 018536 94 GAA--AAAGLSLADVAAEAKRA 113 (354)
Q Consensus 94 GAa--Ae~G~~L~ev~~~a~~~ 113 (354)
-|+ +..|.+++|+.+.+...
T Consensus 108 ~aa~~~~~~~~l~el~~~a~~~ 129 (135)
T 3b48_A 108 ASAITAGVSDDLTQILAEAQNA 129 (135)
T ss_dssp HHHHHHC-CCCHHHHHHHHHTC
T ss_pred HHHHHhhcCCCHHHHHHHHHHH
Confidence 433 35699999998877653
No 13
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A
Probab=59.28 E-value=4 Score=36.73 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=41.8
Q ss_pred eeecCCccCCCC---HHHHHHHHHhhcC-CCceEEEeecccc--------------------------------ccccHH
Q 018536 4 AAICGDVFASPP---VDSILAGIHAVTG-PMGCLLIVTNYTG--------------------------------DRLNFG 47 (354)
Q Consensus 4 Aav~G~vFaSPs---~~~I~~ai~~v~~-~~GvL~iv~NYtG--------------------------------D~lnFg 47 (354)
.+..||||-|.. -.|+-+|++.+.. +.|||+..- -.| |-=+||
T Consensus 53 ec~tgDvfgs~rcdcg~qL~~Al~~I~~~G~GVlvyLr-qegrgigL~~kl~ay~lqd~g~dt~~an~~lg~~~d~R~yg 131 (196)
T 2bz1_A 53 ECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAADERDFT 131 (196)
T ss_dssp CCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEEEEEEC-CHHHHTCHHHHHHHHHHHHTTCCHHHHHHHTTCCSCCCCTH
T ss_pred cCChHHHhCCCCCCChHHHHHHHHHHHHhCCEEEEEEC-CCCcchhHHHHHHHHhhhccCCcccccccccCCCCccccHH
Confidence 456799999984 5689999988874 669998874 222 556888
Q ss_pred HHHHHHHhcCCc
Q 018536 48 LAAEQAKSEGYK 59 (354)
Q Consensus 48 mA~e~a~~~G~~ 59 (354)
++++..+.-|++
T Consensus 132 igAqIL~dLGV~ 143 (196)
T 2bz1_A 132 LCADMFKLLGVN 143 (196)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 888888888875
No 14
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines, structural GE PSI-2, protein structure initiative; HET: MLY MSE PLM; 2.41A {Corynebacterium glutamicum}
Probab=50.54 E-value=21 Score=33.22 Aligned_cols=206 Identities=13% Similarity=-0.014 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHh-hcC--CCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 13 SPPVDSILAGIHA-VTG--PMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 13 SPs~~~I~~ai~~-v~~--~~GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
.||+.++.+..+. ... ...||+|- ..-+|=.=+.-+|+++.. +.+|. |=| -|..-.|.-
T Consensus 44 qps~~~~~~~f~~~~~~~~~d~Ii~I~iSs~LSGTy~sA~~aa~~~~--~~~I~---ViD-----------S~~~s~g~g 107 (277)
T 3egl_A 44 GLSSLELAASYARQLERGGDDGVLALHISXELSSTWSAAVTAAAVFD--DDSVR---VVD-----------TSSLGMAVG 107 (277)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCEEEECSCTTTCSHHHHHHHHHTTSS--TTSEE---EEC-----------CSCCTHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCCcEEEEEeCcchhhhhHHHHHHHHhCC--CCCEE---EEC-----------CCchhHHHH
Confidence 3999999999854 332 25687775 345554444444444321 22322 223 133345666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccccCCCC-C-CCCCCCCceEEeccccCCCCc--ccccCC
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQV-T-SDRLGPGKMELGLGIHGEPGA--AVADLQ 161 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~~Pg~~-~-~f~l~~~e~E~G~GIHgEpG~--~~~~~~ 161 (354)
++..-|-.++++|.+++||.+..++..+++.+.=+- |+.=.-=||= + ...+ -+-+-|=-=+|=+-|. -..+..
T Consensus 108 ~~v~~Aa~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~i-g~lL~IKPIl~~~dG~l~~~~KvR 186 (277)
T 3egl_A 108 AAAMAAARMAXDGASLQECYDIAVDTLXRSETWIYLHRIDEIWXSGRISTATAMV-STALATRPIMRFNGGRMEIAAXTR 186 (277)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTEEEEEECSCSHHHHHTTCSCTTTCSS-GGGGCSSCEEEEETTEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEcCCHHHHhhCCccchHHHHH-hhccceEEEEEEeCCEEEEEEecC
Confidence 777778889999999999999999999888765331 1111111110 0 0000 0000000001111242 235677
Q ss_pred CHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC--eEEEeeecccccccCCC
Q 018536 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL--AVERVYTGSFMTSLDMA 239 (354)
Q Consensus 162 ~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi--~v~r~~vG~~~TSl~m~ 239 (354)
+.+..+++|++.+.+. .. ..+..+.+.+. + . . |. +.++.+.|+++++. ++.-..+|+-+.+==.+
T Consensus 187 g~kka~~~l~~~~~~~----~~--~~~~~i~i~h~-~-~-~-e~---a~~l~~~l~~~~~~~~~i~i~~ig~vIg~H~Gp 253 (277)
T 3egl_A 187 TQSXAFAXLVELAQIR----AD--GEPVFIAIGQN-E-A-R-EA---AXQLEELLRNALPEGSSFMSVDIDPTLAVHSGP 253 (277)
T ss_dssp SHHHHHHHHHHHHHHH----HT--TSCCEEEEEEE-S-C-H-HH---HHHHHHHHHHHSCTTCEEEEEECCHHHHHHHCT
T ss_pred ChhHHHHHHHHHHHHH----hC--CCCEEEEEEeC-C-C-H-HH---HHHHHHHHHHhcCCCceEEEEEEccEEEEEeCC
Confidence 7777888888888653 21 12223333332 2 2 1 22 34555666666553 56666677766554455
Q ss_pred c-ceEEEecc
Q 018536 240 G-FSISIMKA 248 (354)
Q Consensus 240 G-fSiTll~l 248 (354)
| +.|..++-
T Consensus 254 g~igi~~~~~ 263 (277)
T 3egl_A 254 GAVSVSAVFA 263 (277)
T ss_dssp TEEEEEEECS
T ss_pred CeEEEEEEEC
Confidence 5 56665554
No 15
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=49.32 E-value=1.1e+02 Score=25.07 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHhHH
Q 018536 17 DSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAGAA 96 (354)
Q Consensus 17 ~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vlv~KiaGAa 96 (354)
+++.++|+.++.++|||+++== |=-.||.. ...+..+.++++| +=+. +-++.+++ -.
T Consensus 49 ~~i~~~i~~~d~~~GVLiL~Dm--GSp~n~a~--~l~~~~~~~v~vI---~gvn---------------lpmllea~-~~ 105 (130)
T 3gx1_A 49 EKLKQTVVKLNPVKGVLILSDM--GSLTSFGN--ILTEELGIRTKTV---TMVS---------------TPVVLEAM-RK 105 (130)
T ss_dssp HHHHHHHHTSCCTTCEEEEECS--GGGGTHHH--HHHHHHCCCEEEE---CSCC---------------HHHHHHHH-HH
T ss_pred HHHHHHHHhhCCCCCEEEEEeC--CCHHHHHH--HHHHhcCCCEEEE---eCCC---------------HHHHHHHH-HH
Confidence 5666678888999999999942 77777643 3333336676654 1122 23455543 23
Q ss_pred HHcCCCHHHHHHHHHHHHhh
Q 018536 97 AAAGLSLADVAAEAKRASEM 116 (354)
Q Consensus 97 Ae~G~~L~ev~~~a~~~~~~ 116 (354)
+..+.+|+|+++.++..-++
T Consensus 106 ~~~~~~l~el~~~~~~~~~~ 125 (130)
T 3gx1_A 106 ASLGRGLEDIYQSCEQLFEN 125 (130)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHH
Confidence 45566999999888776654
No 16
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=46.21 E-value=85 Score=29.69 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHhhc-CCCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 018536 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~-~~~GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~vl 88 (354)
+.||+.++.++.+... ....||+|- ..-+|=.=+.-+|+++. .+.+ +.+| | -|..-.|.-+
T Consensus 96 SqPs~~~~~~~fe~l~~~~~~Ii~I~iSS~LSGTy~sA~~Aa~~~--~~~~--I~Vi-D-----------S~~~s~g~g~ 159 (315)
T 3fys_A 96 SQPPIGELVALYEELGKSYDAVISIHLSSGISGTFSSAAAADSMV--DNID--VYPF-D-----------SEISCLAQGF 159 (315)
T ss_dssp ECCCHHHHHHHHHHHTTTCSEEEEEESCTTTCSHHHHHHHGGGGC--SSCE--EEEE-E-----------CSSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeCCCcHhHHHHHHHHHHHhC--CCCC--EEEE-C-----------CchhHHHHHH
Confidence 4589999999997654 456677665 33444333333333321 2322 2222 2 1333456666
Q ss_pred HHHHHhHHHHcCC-CHHHHHHHHHHHHhhhcccccc--cccc--------------ccCCCCCCCCCCCCceEEeccccC
Q 018536 89 VNKIAGAAAAAGL-SLADVAAEAKRASEMVGTMGVA--LSVC--------------TLPGQVTSDRLGPGKMELGLGIHG 151 (354)
Q Consensus 89 v~KiaGAaAe~G~-~L~ev~~~a~~~~~~~~Tigva--l~~c--------------~~Pg~~~~f~l~~~e~E~G~GIHg 151 (354)
+..-|-.++++|. +++||.+..++..+++.+.=+- |+.= ++=.=+|-..+.+|+++
T Consensus 160 lv~~Aa~l~~~G~~s~eeI~~~l~~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~ig~lL~IKPIl~~~dG~l~------- 232 (315)
T 3fys_A 160 YALKAAELIKNGASSPEDIIKELEEMKKTVRAYFMVDDLAHLQRGGRLSSAQAFIGSLLKVKPILHFDNKVIV------- 232 (315)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTTCEEEEECSCTHHHHHHTTTHHHHHHHSSCCCSCEEEEEETTEEE-------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccEEEEEECchHHHHhCCcchHHHHHHHhhcCcEEEEEEECCEEE-------
Confidence 6667788999999 9999999999998877664321 0000 00001222233333322
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeec
Q 018536 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (354)
Q Consensus 152 EpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~vG 230 (354)
-..+..+.+..++.|++.+.+. .. ...+..+.+... + .+ | .+.++.+.|+++++. .+.-..+|
T Consensus 233 ----~~~KvRg~kka~~~l~~~~~~~----~~-~~~~~~v~I~h~-~-~~--e---~a~~l~~~l~~~~~~~~i~i~~ig 296 (315)
T 3fys_A 233 ----PFEKIRTRKKAISRIYELLDED----AS-KGLPMRAAVIHA-N-RE--E---EAAKIIEELSAKYPHVEFYNSYFG 296 (315)
T ss_dssp ----EEEECSCHHHHHHHHHHHHHHH----HT-TCCCEEEEEEES-S-CH--H---HHHHHHHHHHHHCTTEEEEEEECC
T ss_pred ----EEeeeccHHHHHHHHHHHHHHH----hh-cCCCcEEEEEec-C-CH--H---HHHHHHHHHHHhCCCCcEEEEEEc
Confidence 2346667777788888877653 11 112223333332 2 22 2 234555666666554 34445566
Q ss_pred ccccccCCCc
Q 018536 231 SFMTSLDMAG 240 (354)
Q Consensus 231 ~~~TSl~m~G 240 (354)
.-+.+==.+|
T Consensus 297 ~vIg~H~GpG 306 (315)
T 3fys_A 297 AVIGTHLGEG 306 (315)
T ss_dssp HHHHHHHCTT
T ss_pred cEEEEEeCCC
Confidence 6555433443
No 17
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=44.58 E-value=12 Score=29.79 Aligned_cols=40 Identities=13% Similarity=0.085 Sum_probs=36.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
..+-|..+|+++.-+---++..+.+.|++.+|+.+.|+|+
T Consensus 57 a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI 96 (114)
T 3djh_A 57 ALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYI 96 (114)
T ss_dssp EEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 5667889999999888889999999999999999999997
No 18
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=43.80 E-value=76 Score=29.44 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHhhcC-C-CceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 12 ASPPVDSILAGIHAVTG-P-MGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~~-~-~GvL~iv--~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
+.||+.++.++.+.... + ..||+|- ..-+|=.=+.-+|+|+. .+.+ |.|=| -+..-.|.-
T Consensus 65 Sqps~~~~~~~f~~l~~~g~d~ii~i~iSs~LSGTy~sA~~a~~~~--~~~~---I~ViD-----------S~~~s~g~g 128 (285)
T 3lup_A 65 SQPSLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEH--PNLT---IAFPD-----------TKITSAPQG 128 (285)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEEECCSCGGGCTHHHHHTTHHHHC--TTSE---EECCC-----------CCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeCCCchhHHHHHHHHHHHhC--CCCC---EEEEc-----------CCchHHHHH
Confidence 45899999999876543 3 4576654 34455433344444321 2322 22222 233445666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccccc--ccccc--------------cCCCCCCCCCC-CCceEEecccc
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCT--------------LPGQVTSDRLG-PGKMELGLGIH 150 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigva--l~~c~--------------~Pg~~~~f~l~-~~e~E~G~GIH 150 (354)
++..-|-.++++|.|++||.+..++..+++.+.=+- |..=. +=.=+|-..+. +|+++
T Consensus 129 ~~v~~A~~l~~~G~s~eeI~~~l~~~~~~~~~~f~v~~L~~L~kGGRis~~~a~ig~lL~IKPIl~~~~~G~l~------ 202 (285)
T 3lup_A 129 NLVRNALMCSREGMDFDVIVNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGKIV------ 202 (285)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTTCEEEEECSCTHHHHHHTCBTTHHHHHHHHTTSCCEEEECTTSCEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECChHHHhhCCCccHHHHHHHHhhCcEEEEEEccCceEE------
Confidence 777777889999999999999999999887665321 00000 00112333333 34443
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeee
Q 018536 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYT 229 (354)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~v 229 (354)
-..+..+.+..++.|++.+.+. .. . .+..+.+... + .+ |. +.++.+.|++++.. .+....+
T Consensus 203 -----~~~KvRg~kka~~~l~~~~~~~----~~-~-~~~~v~i~h~-~-~~--e~---a~~l~~~l~~~~~~~~i~i~~i 264 (285)
T 3lup_A 203 -----VYEKVRTEKKALKRLAEIVKEM----TA-D-GEYDIAIIHS-R-AQ--DK---AEQLYNLLAKAGLKDDLEIVSF 264 (285)
T ss_dssp -----EEECCSSHHHHHHHHHHHHHHH----GG-G-SCEEEEEEES-S-CH--HH---HHHHHHHHHHTTCGGGEEEEEC
T ss_pred -----EeeecCCHHHHHHHHHHHHHHh----hc-C-CCcEEEEEeC-C-CH--HH---HHHHHHHHHhhCCCCeEEEEEE
Confidence 2345666677778888877653 22 1 2222333332 2 22 22 23455555555442 4555566
Q ss_pred cccccccCCCc-ceEEEe
Q 018536 230 GSFMTSLDMAG-FSISIM 246 (354)
Q Consensus 230 G~~~TSl~m~G-fSiTll 246 (354)
|.-+.+==.+| +.|..+
T Consensus 265 g~vig~H~Gpg~igi~~~ 282 (285)
T 3lup_A 265 GGVIATHLGEGAVAFGIT 282 (285)
T ss_dssp CHHHHHHHCTTCEEEEEE
T ss_pred CcEEEEEecCCeEEEEEE
Confidence 76665444444 344433
No 19
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=41.82 E-value=12 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
..+-|..+|+.+...--.+...+.+.|++.+|+.+.|+|+
T Consensus 58 a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI 97 (114)
T 4dh4_A 58 AFIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYT 97 (114)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 5677889999999777889999999999999999999986
No 20
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=41.13 E-value=17 Score=28.67 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=36.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 188 d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
+-+.+=|..+||.+..+...+++++.+.|.+.+|+.+.|+|+
T Consensus 56 ~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (115)
T 1uiz_A 56 PCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYI 97 (115)
T ss_dssp SCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 335667888999999888999999999999999999998886
No 21
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=40.99 E-value=49 Score=31.38 Aligned_cols=196 Identities=12% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHhhc-CC-CceEEEee--ccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 12 ASPPVDSILAGIHAVT-GP-MGCLLIVT--NYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 12 aSPs~~~I~~ai~~v~-~~-~GvL~iv~--NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
+.||+.++.++.+... .+ ..||+|-- .-+|=.=+.-+|+++. +.+ +.+| |- +..-.|.-
T Consensus 89 SqPs~~~~~e~f~~l~~~g~d~Ii~I~iSs~LSGTy~sA~~Aa~~~---~~~--I~Vi-DS-----------~~~s~g~g 151 (313)
T 1mgp_A 89 SQPSVEDFKKRYLKYKEEDYDVVLVLTLSSKLSGTYNSAVLASKEV---DIP--VYVV-DT-----------LLASGAIP 151 (313)
T ss_dssp ECCCHHHHHHHHHHHHHTTCSEEEEEESCTTTCSHHHHHHHHHHHS---SSC--EEEE-EC-----------SCCGGGTH
T ss_pred CCcCHHHHHHHHHHHHHcCCCeEEEEECCccHhHHHHHHHHHHhcC---CCe--EEEE-eC-----------CcchHHHH
Confidence 4589999999997653 33 35666642 2344333444444442 222 2222 21 22234555
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHh--hhcccccc--ccccccCCCC-C-CCCCCCCc--eEEeccccCCCCc--cc
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASE--MVGTMGVA--LSVCTLPGQV-T-SDRLGPGK--MELGLGIHGEPGA--AV 157 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~--~~~Tigva--l~~c~~Pg~~-~-~f~l~~~e--~E~G~GIHgEpG~--~~ 157 (354)
++..-|-.++++|.|++||.+..+...+ ++.+.=+- |..=.-=||= + ...+ -+- +--=+.+. -|. -.
T Consensus 152 ~lv~~Aa~l~~~G~s~eeI~~~l~~~~~~~~~~~~f~v~~L~~L~kGGRIs~~~a~i-G~lL~IKPIl~~~--~G~l~~~ 228 (313)
T 1mgp_A 152 LPARVAREMLENGATIEEVLKKLDERMKNKDFKAIFYVSNFDYLVKGGRVSKFQGFV-GNLLKIRVCLHIE--NGELIPY 228 (313)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEEESCTHHHHHHTCC----------CTTEEEEEEEE--TTEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhhhCceEEEEEeCCHHHHhHCCCccHHHHHH-HHhhCcEEEEEEE--CCEEEEe
Confidence 6666777889999999999999999999 77665331 1111100110 0 0000 000 01011112 242 23
Q ss_pred ccCCCHHHHHHHHHHHHHccccCCCCCCCC-CeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeecccccc
Q 018536 158 ADLQPVDVVVSHVLKQILSTETNYVPITRG-NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTGSFMTS 235 (354)
Q Consensus 158 ~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~-d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi-~v~r~~vG~~~TS 235 (354)
.+..+.+..+++|++.+.+. .. .. ....+.| . ++.+ | .+.++.+.|+++++. ++.-..+|.-+.+
T Consensus 229 ~KvRg~kka~~~l~~~~~~~----~~--~~~~~~~i~I-h-~~~~--e---~a~~l~~~l~~~~~~~~i~i~~ig~vig~ 295 (313)
T 1mgp_A 229 RKVRGDKKAIEALIEKLRED----TP--EGSKLRVIGV-H-ADNE--A---GVVELLNTLRKSYEVVDEIISPMGKVITT 295 (313)
T ss_dssp EEEESHHHHHHHHHHHHHTT----SC--TTCEEEEEEE-E-SSCH--H---HHHHHHHHHTTTSEEEEEEEEECCHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHH----hh--ccCCCeEEEE-E-eCCH--H---HHHHHHHHHHHhCCCCCEEEEEEccEEEE
Confidence 45566677888888888652 11 11 2344555 3 3332 2 245566666665442 3333445655554
Q ss_pred cCCCc
Q 018536 236 LDMAG 240 (354)
Q Consensus 236 l~m~G 240 (354)
==.+|
T Consensus 296 H~GpG 300 (313)
T 1mgp_A 296 HVGPG 300 (313)
T ss_dssp HHCTT
T ss_pred EcCCC
Confidence 43443
No 22
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=39.41 E-value=21 Score=28.36 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=36.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 188 d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
+-+.+=|..+||.+..+.-.+++++.+.|.+.+|+.+.|+|+
T Consensus 56 ~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (119)
T 2os5_A 56 PVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVII 97 (119)
T ss_dssp SCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 346677888999998888899999999999999999999886
No 23
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=39.26 E-value=16 Score=28.64 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=35.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
+.+=|..+||.+..+...+++++.+.|.+.+|+.+.|+|+
T Consensus 57 ~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 96 (113)
T 1hfo_A 57 AFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYI 96 (113)
T ss_dssp EEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEE
Confidence 5667888999998888899999999999999999998886
No 24
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=39.05 E-value=15 Score=28.93 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=36.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 189 RVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 189 ~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
-+.+=|...||.+..+.-.+++++.+.|++.+|+.+.|+|+
T Consensus 57 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (112)
T 3b64_A 57 VACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFV 97 (112)
T ss_dssp CEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 35667889999998888899999999999999999999886
No 25
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=37.64 E-value=16 Score=30.31 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
+.+-|..+|+.+..+--.+++.+.+.|++.+||.+.|+|+=
T Consensus 79 a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~ 119 (133)
T 3fwu_A 79 ACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVL 119 (133)
T ss_dssp EEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 56678899999887788899999999999999999999973
No 26
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=37.26 E-value=1.1e+02 Score=24.40 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=39.1
Q ss_pred ceeecCCccCCCCHHHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 018536 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (354)
Q Consensus 3 ~Aav~G~vFaSPs~~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~v~ 66 (354)
|.+++..+ +...+++..++.+ +.|.|++...... ++.-..+..+..|.+++.+-+.
T Consensus 102 D~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~ 157 (183)
T 2yxd_A 102 NKAFIGGT---KNIEKIIEILDKK--KINHIVANTIVLE---NAAKIINEFESRGYNVDAVNVF 157 (183)
T ss_dssp SEEEECSC---SCHHHHHHHHHHT--TCCEEEEEESCHH---HHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEECCc---ccHHHHHHHHhhC--CCCEEEEEecccc---cHHHHHHHHHHcCCeEEEEEee
Confidence 44555555 6778888888887 8888888864433 2445667777889888877543
No 27
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=32.70 E-value=20 Score=28.24 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=36.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 188 d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
+-+.+=|..+||.+..+...+++++.+.|.+.+|+.+.|+|+
T Consensus 56 ~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (115)
T 2xcz_A 56 PTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYI 97 (115)
T ss_dssp SCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 335666778999999999999999999999999999998886
No 28
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=32.16 E-value=14 Score=30.56 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~vG 230 (354)
+.+-|..+|+.+..+--.+++++.+.|++.+||.+.|+|+=
T Consensus 79 a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvyI~ 119 (133)
T 3fwt_A 79 AYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVF 119 (133)
T ss_dssp EEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 55667777888888888899999999999999999999973
No 29
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.48 E-value=82 Score=24.69 Aligned_cols=50 Identities=18% Similarity=0.372 Sum_probs=31.3
Q ss_pred cCCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHH
Q 018536 150 HGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKA 212 (354)
Q Consensus 150 HgEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v 212 (354)
|+=||.......|..++ ..++..+ + +.|.+.+|+||+ .|+-..+-+-+++
T Consensus 24 hnypgryirtatssqdi-rdiiksm--------k-dngkplvvfvng---asqndvnefqnea 73 (112)
T 2lnd_A 24 HNYPGRYIRTATSSQDI-RDIIKSM--------K-DNGKPLVVFVNG---ASQNDVNEFQNEA 73 (112)
T ss_dssp HHSCTTTEEEECSHHHH-HHHHHHH--------T-TCCSCEEEEECS---CCHHHHHHHHHHH
T ss_pred cCCCCceeeeccchhhH-HHHHHHH--------H-hcCCeEEEEecC---cccccHHHHHHHH
Confidence 88899765555555555 3333333 2 358889999998 5665555555544
No 30
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=31.25 E-value=15 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=32.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 189 RVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 189 ~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
-+.+-|..+|+.+..+--.+++.+.+.|++.+||.+.|+|+
T Consensus 78 ~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI 118 (135)
T 3t5s_A 78 CCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYI 118 (135)
T ss_dssp CEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEE
Confidence 35677889999988888889999999999999999999997
No 31
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=29.64 E-value=20 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeee
Q 018536 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYT 229 (354)
Q Consensus 190 vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~gi~v~r~~v 229 (354)
+.+=|..+||.+..+.-.+++++.+.|.+.+|+.+.|+|+
T Consensus 58 ~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I 97 (125)
T 2wkb_A 58 CFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYI 97 (125)
T ss_dssp EEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEE
Confidence 5667889999999888899999999999999999998886
No 32
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=28.75 E-value=81 Score=27.36 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHH----HHHHHHHhhhhhcCCeEEEeeeccccccc
Q 018536 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMI----AAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (354)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~i----i~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (354)
+-.+.+.+.+.+.|++- .+.+|+++- . ....|.+- -++++++.|+.. |+-..+...|.|++.+
T Consensus 16 ~~~~~v~~~l~~~I~~g-----~l~pG~~L~--E-----~~La~~lgVSRtpVREAl~~L~~e-Glv~~~~~~G~~V~~~ 82 (222)
T 3ihu_A 16 SASDTVFFGIMSGLELG-----TFVPGQRLV--E-----TDLVAHFGVGRNSVREALQRLAAE-GIVDLQRHRGAVIRRL 82 (222)
T ss_dssp CHHHHHHHHHHHHHHHT-----SSCTTCEEC--H-----HHHHHHHTCCHHHHHHHHHHHHHT-TSEEECSTTCEEECCC
T ss_pred cHHHHHHHHHHHHHHhC-----CCCCCCccC--H-----HHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCCCeEEecC
Confidence 34466777888888873 577898832 1 11222222 578999999999 9988888899999876
Q ss_pred C
Q 018536 237 D 237 (354)
Q Consensus 237 ~ 237 (354)
+
T Consensus 83 ~ 83 (222)
T 3ihu_A 83 S 83 (222)
T ss_dssp C
T ss_pred C
Confidence 5
No 33
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=22.89 E-value=1.2e+02 Score=27.73 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=37.0
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHccccCCCCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 018536 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (354)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~r~~~~~~~~d~vvvlvNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~ 225 (354)
+=||.-..+..+.-.++..+++.|.. .|=+-+|+||+=||-. +..+++++. .++ ++.+.
T Consensus 83 ~fPGTisl~~~tl~~~l~di~~sl~~---------~G~rrlvivNgHGGN~---l~~a~~~l~----~~~~~~~v~ 142 (254)
T 3lub_A 83 ELPFCIHTRYATQQAILEDIVSSLHV---------QGFRKLLILSGHGGNN---FKGMIRDLA----FEYPDFLIA 142 (254)
T ss_dssp TSTTCCBCCHHHHHHHHHHHHHHHHH---------TTCCEEEEEESCTTCC---CHHHHHHHH----HHCTTCEEE
T ss_pred CcCCeEEeCHHHHHHHHHHHHHHHHH---------cCCCEEEEEeCCchHH---HHHHHHHHH----HHCCCcEEE
Confidence 44776555555555666666666644 2556789999999987 444555554 443 55554
No 34
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, structural genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Probab=22.53 E-value=68 Score=29.72 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHhh-cCC-CceEEEee--ccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 018536 12 ASPPVDSILAGIHAV-TGP-MGCLLIVT--NYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (354)
Q Consensus 12 aSPs~~~I~~ai~~v-~~~-~GvL~iv~--NYtGD~lnFgmA~e~a~~~G~~v~~v~v~DDva~~~~~~~~gRRGlaG~v 87 (354)
+.||+.++.++.+.. ..+ ..||+|-- .-+|=.=+.-+|++ . ++.+|. +| | -+..-.|.-
T Consensus 66 Sqps~~~~~~~f~~l~~~gy~~ii~i~iSs~LSGTy~sA~~aa~-~--~~~~I~--Vi-D-----------S~~~s~g~g 128 (282)
T 2g7z_A 66 SQPPVGLFAETYENLVKKGVTDIVAIHLSPALSGTIEASRQGAE-I--AEAPVT--VL-D-----------SGFTDQAMK 128 (282)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEECCTTTCTHHHHHHHHHH-H--HTCCEE--EE-E-----------CSSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEECCCcHhHHHHHHHHHHh-C--CCCeEE--EE-C-----------CCchhHHHH
Confidence 458999999999765 343 46766642 33454445555655 3 222332 22 2 123345666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccccc
Q 018536 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (354)
Q Consensus 88 lv~KiaGAaAe~G~~L~ev~~~a~~~~~~~~Tigv 122 (354)
++..-|-.++++|.|++||.+..++..+++++.=+
T Consensus 129 ~~v~~A~~l~~~G~s~~eI~~~l~~~~~~~~~~f~ 163 (282)
T 2g7z_A 129 FQVVEAAKMAKAGASLNEILAAVQAIKSKTELYIG 163 (282)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 66677788899999999999999999998877543
No 35
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=21.81 E-value=49 Score=30.62 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=26.9
Q ss_pred eecCC-cc--CCCCHHH---HHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcC
Q 018536 5 AICGD-VF--ASPPVDS---ILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEG 57 (354)
Q Consensus 5 av~G~-vF--aSPs~~~---I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G 57 (354)
.++|| +| ..|+... ..+.++.+.....|++|.+|+--..++ ...+..+..|
T Consensus 66 liaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~GNHD~~~~~--~~~~~l~~~g 122 (336)
T 2q8u_A 66 LLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLK--LFGNFVTSIS 122 (336)
T ss_dssp EEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC------CH--HHHHHHHHHC
T ss_pred EECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCccccc--cHHHHHHhcC
Confidence 46999 99 4566543 444555543225799999998765533 3344455456
No 36
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=21.72 E-value=1e+02 Score=24.66 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=29.0
Q ss_pred ccCCCCH---HHHHHHHHhhcCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEE
Q 018536 10 VFASPPV---DSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVI 64 (354)
Q Consensus 10 vFaSPs~---~~I~~ai~~v~~~~GvL~iv~NYtGD~lnFgmA~e~a~~~G~~v~~v~ 64 (354)
++-||.. +.+++.|+.+. --++|..-|-.| -.+--|...|...|++|++++
T Consensus 7 ~~f~p~~~~~~~~~~~i~~A~---~~I~i~~~~~~~-~~i~~aL~~a~~rGV~Vril~ 60 (155)
T 1byr_A 7 VGYSPEGSARVLVLSAIDSAK---TSIRMMAYSFTA-PDIMKALVAAKKRGVDVKIVI 60 (155)
T ss_dssp EEEETTTHHHHHHHHHHHHCS---SEEEEEESSBCC-HHHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHh---hEEEEEEEEeCC-HHHHHHHHHHHHCCCEEEEEE
Confidence 4456653 34444555443 366666665544 233445556667899988766
No 37
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=21.65 E-value=87 Score=26.21 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=23.5
Q ss_pred eecCCccCCC-CHHHHHHHHHhhcC-CCceEEEeeccccc
Q 018536 5 AICGDVFASP-PVDSILAGIHAVTG-PMGCLLIVTNYTGD 42 (354)
Q Consensus 5 av~G~vFaSP-s~~~I~~ai~~v~~-~~GvL~iv~NYtGD 42 (354)
.++||+|-.. +..+....++.+.. +..+++|.+|+--.
T Consensus 37 i~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~ 76 (228)
T 1uf3_A 37 ALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAP 76 (228)
T ss_dssp EEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCS
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCCch
Confidence 3688888665 55544444444432 34688888888643
Done!