Query 018537
Match_columns 354
No_of_seqs 82 out of 84
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 81.8 4.5 0.00015 34.5 7.5 94 60-177 14-109 (131)
2 1kdx_B CREB; complex (transcri 31.6 21 0.00073 23.4 1.6 13 138-150 12-24 (28)
3 3ic3_A Putative pyruvate dehyd 17.4 55 0.0019 27.1 1.8 15 307-321 44-58 (101)
4 3lfp_A CSP231I C protein; tran 16.1 1.2E+02 0.0041 22.6 3.3 53 133-202 37-89 (98)
5 2xi8_A Putative transcription 16.0 1.4E+02 0.0047 19.8 3.4 37 120-156 20-56 (66)
6 1oey_A P67-PHOX, neutrophil cy 15.9 81 0.0028 24.9 2.4 20 137-156 21-40 (83)
7 1rp3_A RNA polymerase sigma fa 15.6 3E+02 0.01 22.7 6.1 36 142-177 21-56 (239)
8 4dnd_A Syntaxin-10, SYN10; str 15.2 1.2E+02 0.004 25.5 3.4 53 61-125 70-122 (130)
9 1b0n_A Protein (SINR protein); 14.9 1.2E+02 0.004 22.6 3.1 38 120-157 20-58 (111)
10 2al3_A TUG long isoform; TUG U 13.5 78 0.0027 25.5 1.7 18 139-156 29-46 (90)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=81.82 E-value=4.5 Score=34.45 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhcCCCCCCcc--hhhhcccCCcchhHHhhhhhHHHHHHHHHHHHHcccccchhhhhcC
Q 018537 60 DPELRSVLELATDSELYELERILFGPSYFSPL--LKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (354)
Q Consensus 60 ~~ELr~vLelATdeEL~~L~~ILf~~s~fsPL--lkSi~~r~~~Dy~~~~~~~~~R~~~i~~Ie~rfrflAaD~~s~LRG 137 (354)
.|.....+...+-++|..|.+|||++. .+.- -++|..=.+-.+ +.++.+++.-.+.|+.
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~---~~~~~~~~k~~e~l~K--------------- 74 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPF---EKGSVQYKKKEEMLKK--------------- 74 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSC---CCSSHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCC---CccHHHHHHHHHHHHc---------------
Confidence 466677788888899999999999975 2221 122221111111 1223333333233321
Q ss_pred CCccHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhh
Q 018537 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (354)
Q Consensus 138 ~gpsYReVLldVckkLkV~~s~~lsT~dLEaeIflhLL~~ 177 (354)
...+-|.++|+=|+|+++. +.++|-+.|+..|..=
T Consensus 75 ---~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~P 109 (131)
T 2jx3_A 75 ---FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMHP 109 (131)
T ss_dssp ---HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTSC
T ss_pred ---cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhCc
Confidence 2356789999999999985 4678877777666543
No 2
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=31.60 E-value=21 Score=23.44 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.0
Q ss_pred CCccHHHHHHHHH
Q 018537 138 WRPSYRNVLLAVR 150 (354)
Q Consensus 138 ~gpsYReVLldVc 150 (354)
++||||.||-|..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998864
No 3
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=17.39 E-value=55 Score=27.09 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHH
Q 018537 307 LGPVLWGTFLADVVI 321 (354)
Q Consensus 307 lGPilW~wf~aDL~~ 321 (354)
=.|-.||.+++||+-
T Consensus 44 ~~p~~WG~lLaDlar 58 (101)
T 3ic3_A 44 EDPEMWGLLLVDIAR 58 (101)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 479999999999993
No 4
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=16.06 E-value=1.2e+02 Score=22.58 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=33.9
Q ss_pred hhhcCCCccHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhHH
Q 018537 133 STLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSL 202 (354)
Q Consensus 133 s~LRG~gpsYReVLldVckkLkV~~s~~lsT~dLEaeIflhLL~~~~~~~~~~~~~awek~~~~~e~~sl 202 (354)
..-+|.+..--+.|..+|+.|+|+.+.=+..++-..+ ++.. +.+++++ +++.+
T Consensus 37 ~~E~g~~~p~~~~l~~la~~l~v~~~~l~~~~~~~~~----~~~~------------~~~l~~~-~~~~~ 89 (98)
T 3lfp_A 37 QYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ----IILT------------WNELNEQ-ERKRI 89 (98)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHTSCGGGGGCCCHHHHH----HHHH------------HTTCCHH-HHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCChhHHH----HHHH------------HHhCCHH-HHHHH
Confidence 4446875455667889999999998765544433333 2233 5568877 66665
No 5
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=15.95 E-value=1.4e+02 Score=19.79 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHcccccchhhhhcCCCccHHHHHHHHHhhcCcC
Q 018537 120 LESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIP 156 (354)
Q Consensus 120 Ie~rfrflAaD~~s~LRG~gpsYReVLldVckkLkV~ 156 (354)
++.++-.=........+|....-.+.+..+|+.|+|+
T Consensus 20 lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 20 LAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp HHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 4555443333334566787555567788999999986
No 6
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=15.93 E-value=81 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCccHHHHHHHHHhhcCcC
Q 018537 137 GWRPSYRNVLLAVRKNLNIP 156 (354)
Q Consensus 137 G~gpsYReVLldVckkLkV~ 156 (354)
..+.+|+++.-.||+||+++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 56999999999999999997
No 7
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=15.58 E-value=3e+02 Score=22.69 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhh
Q 018537 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (354)
Q Consensus 142 YReVLldVckkLkV~~s~~lsT~dLEaeIflhLL~~ 177 (354)
|...+..+|.++.-.+......+||-+|.|+.+++.
T Consensus 21 ~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 21 YLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 556666677766433456678999999999999987
No 8
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=15.20 E-value=1.2e+02 Score=25.54 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=31.3
Q ss_pred hhHHHHHHhhChHHHHHHHHHhcCCCCCCcchhhhcccCCcchhHHhhhhhHHHHHHHHHHHHHc
Q 018537 61 PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFL 125 (354)
Q Consensus 61 ~ELr~vLelATdeEL~~L~~ILf~~s~fsPLlkSi~~r~~~Dy~~~~~~~~~R~~~i~~Ie~rfr 125 (354)
.||+..|+-+ +++|+||.+-+- +..+++..|.--......|++|+..+.+++.
T Consensus 70 ~EL~~~l~si-e~dLeDLe~sI~-----------ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 70 NELRNGLRSI-EWDLEDLEETIG-----------IVEANPGKFKLPAGDLQERKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH-----------HHHHCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHH-----------HHHhCHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4557776655 456777765443 1122222332222347889999999998875
No 9
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=14.90 E-value=1.2e+02 Score=22.63 Aligned_cols=38 Identities=16% Similarity=0.035 Sum_probs=23.8
Q ss_pred HHHHHcccccchhhhhcC-CCccHHHHHHHHHhhcCcCC
Q 018537 120 LESRFLFLAADARSTLRG-WRPSYRNVLLAVRKNLNIPC 157 (354)
Q Consensus 120 Ie~rfrflAaD~~s~LRG-~gpsYReVLldVckkLkV~~ 157 (354)
++.++-.=.....+..+| ....-.+.|..+|+.|+|+.
T Consensus 20 lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~ 58 (111)
T 1b0n_A 20 LAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSV 58 (111)
T ss_dssp HHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCH
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCH
Confidence 444444332333456678 64445677889999999874
No 10
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=13.50 E-value=78 Score=25.50 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CccHHHHHHHHHhhcCcC
Q 018537 139 RPSYRNVLLAVRKNLNIP 156 (354)
Q Consensus 139 gpsYReVLldVckkLkV~ 156 (354)
+-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 567889999999999996
Done!