Your job contains 1 sequence.
>018538
MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK
RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL
NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA
QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG
TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK
LYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMVWKFEACIL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018538
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119073 - symbol:AT4G21770 species:3702 "Arabi... 1088 3.8e-110 1
DICTYBASE|DDB_G0277359 - symbol:DDB_G0277359 "Pseudouridy... 127 2.8e-05 1
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 119 0.00013 1
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 116 0.00032 2
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 114 0.00084 1
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 114 0.00084 1
GENEDB_PFALCIPARUM|PFE1080w - symbol:PFE1080w "ribosomal ... 115 0.00088 1
UNIPROTKB|Q8I3P7 - symbol:PFE1080w "Ribosomal large subun... 115 0.00088 1
>TAIR|locus:2119073 [details] [associations]
symbol:AT4G21770 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161555 EMBL:AL035527
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AY142506
EMBL:AK226645 IPI:IPI00544059 PIR:T05852 RefSeq:NP_193908.1
UniGene:At.32599 ProteinModelPortal:Q9SVS0 PRIDE:Q9SVS0
EnsemblPlants:AT4G21770.1 GeneID:828265 KEGG:ath:AT4G21770
TAIR:At4g21770 eggNOG:NOG306455 HOGENOM:HOG000242495
InParanoid:Q9SVS0 OMA:THQIDNC PhylomeDB:Q9SVS0
ProtClustDB:CLSN2685595 Genevestigator:Q9SVS0 Uniprot:Q9SVS0
Length = 472
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 213/327 (65%), Positives = 255/327 (77%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLS-FSSSNRNFVCESWKRHVFX 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S +
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTTP--LFRSNKHSPRFISSPKRFTCLSLLK---- 56
Query: 66 XXXXXXXXXXXXPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 57 -TDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSE 331
L APLP+GI++HYMRP N+APRLV+E
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAE 322
>DICTYBASE|DDB_G0277359 [details] [associations]
symbol:DDB_G0277359 "Pseudouridylate synthase PUS5"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 dictyBase:DDB_G0277359
GO:GO:0003723 EMBL:AAFI02000019 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 KO:K01718 RefSeq:XP_642774.1
ProteinModelPortal:Q86K31 STRING:Q86K31 EnsemblProtists:DDB0217957
GeneID:8620965 KEGG:ddi:DDB_G0277359 InParanoid:Q86K31 OMA:YIIFENQ
Uniprot:Q86K31
Length = 386
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 45/169 (26%), Positives = 74/169 (43%)
Query: 179 EAQKTFRI---THVDQIVEAGTYLRVHVHPKRFPRCYDIDW---NSRIIAVTESHVVLDK 232
E KT I +D+++ G+ L+ +P R ID+ N II + +V+DK
Sbjct: 71 EVTKTKTIPKRVQIDKVINKGSLLKYFFYP-RVNSTDHIDFKNFNKYIIFENQYFLVIDK 129
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTP-------LRTTHQIDNCTEGCVVLARTQEY 285
P G +VG D++ + +F L L H +D+ T G V+A+ +
Sbjct: 130 PHGINVGPIVDHLHNNFTSFVKDWLKKRNNNNDNNLILYNPHNLDSPTRGLFVIAKDFNF 189
Query: 286 CSIFHRKIREKKVKKLYLALT-------TAPLPVGIMTHYMRPINIAPR 327
S F++ + +KKV K Y A + GI H+M N +P+
Sbjct: 190 LSKFNKLLSDKKVSKKYKAFIPIKENEENIEIKPGIYKHFMEITNHSPK 238
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 44/180 (24%), Positives = 79/180 (43%)
Query: 166 LSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTE 225
L+ ++ V+ T I +VD+I + VH R + II E
Sbjct: 30 LNSSKALASSRVQRGD-TVSIRNVDKIASRSKEAK-EVHDDALLRLV----SDNIIYKDE 83
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ + ++KPAG +V G T + S + ++ + L H++D T G +++AR Q
Sbjct: 84 NIIAINKPAGVNVQGGT-KVSISLSDLLNKIIP-GEQLHIVHRLDRDTSGVLIIARGQSI 141
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI------NIAPRLV-SEGKTIFGL 338
I ++R ++V+K Y+A+T +P PI + L+ E KT+F +
Sbjct: 142 ARILSEELRFRRVRKEYIAVTKG-VPAFSKGEITMPIYCKKQSGVGETLIPKEAKTVFSV 200
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 116 (45.9 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
V+++KPAG V T + E + A + G LR +++D T G +LA++
Sbjct: 88 VIVNKPAGLPVHRTAEAGEANLVELAEHFMAGRGTAVKLRPVNRLDRGTSGATILAKSSS 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
+ R ++E+ + KLYLA+T LP
Sbjct: 148 SAGMLGRYVKEEGLDKLYLAVTDGSLP 174
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 183 TFRITHVDQIVEAGTYLR 200
T++IT +D A ++LR
Sbjct: 3 TYQITDIDHCRSAESFLR 20
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 114 (45.2 bits), Expect = 0.00084, P = 0.00084
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPI 322
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIH-RYRCPI 211
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 114 (45.2 bits), Expect = 0.00084, P = 0.00084
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTHYMRPI 322
T G +VLA+T+ F + +R+ K +K YLA + P GI Y PI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGIH-RYRCPI 211
>GENEDB_PFALCIPARUM|PFE1080w [details] [associations]
symbol:PFE1080w "ribosomal large subunit
pseudouridylate synthase, putative" species:5833 "Plasmodium
falciparum" [GO:0004730 "pseudouridylate synthase activity"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723
GO:GO:0006364 EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01718 RefSeq:XP_001351773.1
ProteinModelPortal:Q8I3P7 EnsemblProtists:PFE1080w:mRNA
GeneID:813031 KEGG:pfa:PFE1080w EuPathDB:PlasmoDB:PF3D7_0521500
HOGENOM:HOG000283688 ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 219 RIIAVTESHVVLDKPAGTSVG-GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI+
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPIS 168
>UNIPROTKB|Q8I3P7 [details] [associations]
symbol:PFE1080w "Ribosomal large subunit pseudouridylate
synthase, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0006364
EMBL:AL844504 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 KO:K01718
RefSeq:XP_001351773.1 ProteinModelPortal:Q8I3P7
EnsemblProtists:PFE1080w:mRNA GeneID:813031 KEGG:pfa:PFE1080w
EuPathDB:PlasmoDB:PF3D7_0521500 HOGENOM:HOG000283688
ProtClustDB:CLSZ2432216 Uniprot:Q8I3P7
Length = 487
Score = 115 (45.5 bits), Expect = 0.00088, P = 0.00088
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 219 RIIAVTESHVVLDKPAGTSVG-GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI+
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPIS 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 341 0.00095 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 621 (66 KB)
Total size of DFA: 248 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.13u 0.18s 30.31t Elapsed: 00:00:02
Total cpu time: 30.13u 0.18s 30.31t Elapsed: 00:00:02
Start: Mon May 20 17:56:55 2013 End: Mon May 20 17:56:57 2013