BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018538
(354 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224076324|ref|XP_002304926.1| predicted protein [Populus trichocarpa]
gi|222847890|gb|EEE85437.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/331 (71%), Positives = 274/331 (82%), Gaps = 12/331 (3%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWK 60
M+S++ +SIF+ + RS APV+LLRTLA T A ++ K +V S S + CES K
Sbjct: 1 MASLNLASIFSYSYRSFSAPVTLLRTLAFTRA---YSLNKKALVWC-SLSKKKLSCESLK 56
Query: 61 RHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICREL 120
+ + T T+++ GYPEY RLLPCPS N PPR+EHLVVSE GPVL+YIC+ L
Sbjct: 57 QDIACTTATSSVN--------GYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKAL 108
Query: 121 NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREA 180
+LPPLFVADLIHFGAV+YALVCP+PP TATPEQ+RVF+EVT PSVL KR+SIKGKTVREA
Sbjct: 109 DLPPLFVADLIHFGAVHYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREA 168
Query: 181 QKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGG 240
QKTFRITHVDQ +EAG YLRVHVHPKRFPRCYDIDW SRII VTES VVLDKPAGTSVGG
Sbjct: 169 QKTFRITHVDQFLEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGG 228
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
TTDNIEESCATFA+RALGLT PLRTTHQIDNCTEGCVVLART+E CS+FH KIREK VKK
Sbjct: 229 TTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKK 288
Query: 301 LYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
LY+AL +P+P+G++ HYMRPIN+APRLVSE
Sbjct: 289 LYIALAASPVPIGVVNHYMRPINMAPRLVSE 319
>gi|225444351|ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis
vinifera]
gi|302144082|emb|CBI23187.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/328 (73%), Positives = 271/328 (82%), Gaps = 21/328 (6%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG VL+YI + L+LP
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PLFVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 118 PLFVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
NIEESCATFA+RALGLTTPLRTTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKKLY
Sbjct: 238 NIEESCATFATRALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYR 297
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE 331
AL AP+P+GI+THYMRP+NIAPRL+SE
Sbjct: 298 ALAAAPMPIGIVTHYMRPVNIAPRLISE 325
>gi|255554955|ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542360|gb|EEF43902.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 476
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/333 (71%), Positives = 275/333 (82%), Gaps = 10/333 (3%)
Query: 1 MSSVSFSSIFTNNGRSLGAPVSLLRTLASTHA-SCHRNIYKSNVV-LSFSSSNRNFVCES 58
MSS+S +SIF RS PV++LRTLASTHA S HR+ K+ + S +S R F CES
Sbjct: 1 MSSLSLASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCES 60
Query: 59 WKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICR 118
K V T+T+ + G +Y RLLPCPS N PPR+EHLVV E GPVL+YIC+
Sbjct: 61 SKPEVAYTTNTSCVN--------GNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICK 112
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
L+LPPLFVADLI FGAV+YALVCP+PP TATPEQ+R+F++ T PSVL KRSSIKGKTVR
Sbjct: 113 ALDLPPLFVADLIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVR 172
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
EAQKTFRITHVDQ +EAGTYLRVHVHPKRFPRCYDIDW SRIIAVT+ +VVLDKPAGTSV
Sbjct: 173 EAQKTFRITHVDQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSV 232
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
GGT DNIEESCATFA+RALGLTTPL+TTHQIDNCTEGCVVLAR++EYCS+FH KIREKKV
Sbjct: 233 GGTADNIEESCATFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKV 292
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
KKLYLAL +P+PVG++ +YMRP+NIAPRL+SE
Sbjct: 293 KKLYLALAASPVPVGVIKNYMRPVNIAPRLLSE 325
>gi|449467613|ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/335 (69%), Positives = 267/335 (79%), Gaps = 18/335 (5%)
Query: 22 SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAATT 77
SLLRTLA S A+ R+ + S S + F C+S + TD + AT
Sbjct: 20 SLLRTLARPRASLSAASSRDYFAPR--RSLGSKSSAFPCKS------SITDVT-VKTATN 70
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
+ GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+ LNLPPL+VADLIHFGAVY
Sbjct: 71 SAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVY 130
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALVCP+PP TATPEQ+R+FK+ T+PS L R SIKGKTVREAQKTFRITHVD+ VE GT
Sbjct: 131 YALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGT 190
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATFA+RAL
Sbjct: 191 YLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRAL 250
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GLT+PL TTHQIDNCTEGCV+ ART+EYCSIFH KIREKKV KLYLAL+ AP+P+GI+TH
Sbjct: 251 GLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITH 310
Query: 318 YMRPINIAPRLVS----EGKTIFGLALM-IREMVW 347
YMRPINIAPRLVS +G I L ++ RE+ W
Sbjct: 311 YMRPINIAPRLVSKDCIDGWIICQLEVLECREVSW 345
>gi|449488468|ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
chloroplastic-like [Cucumis sativus]
Length = 475
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/335 (69%), Positives = 266/335 (79%), Gaps = 18/335 (5%)
Query: 22 SLLRTLA----STHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAATT 77
SLLRTLA S A+ R+ + S S + F C+S + TD + AT
Sbjct: 20 SLLRTLARPRASLSAASSRDYFAPRC--SLGSKSSAFPCKS------SITDVT-VKTATN 70
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
+ GYP+YHRLLPCPS + PPRVEH+VV E GPV+EYIC+ LNLPPL+VADLIHFGAVY
Sbjct: 71 SAENGYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVY 130
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALVCP+PP TATPEQ+R+FK T+PS L R SIKGKTVREAQKTFRITHVD+ VE GT
Sbjct: 131 YALVCPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGT 190
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATFA+RAL
Sbjct: 191 YLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRAL 250
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GLT+PL TTHQIDNCTEGCV+ ART+EYCSIFH KIREKKV KLYLAL+ AP+P+GI+TH
Sbjct: 251 GLTSPLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITH 310
Query: 318 YMRPINIAPRLVS----EGKTIFGLALM-IREMVW 347
YMRPINIAPRLVS +G I L ++ RE+ W
Sbjct: 311 YMRPINIAPRLVSKDCIDGWIICQLEVLECREVSW 345
>gi|356546416|ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/336 (66%), Positives = 259/336 (77%), Gaps = 26/336 (7%)
Query: 7 SSIFTNNGRSLGAP-----VSLLRTLASTHASCH------RNIYKSNVVLSFSSSNRNFV 55
S +F R L P + + R S+H + H R+ + SN L+ +
Sbjct: 5 SMLFAGGCRILAVPAAARAIRIPRAALSSHHNKHAPSWGCRSSHNSNTALAGEAE----- 59
Query: 56 CESWKRHVFTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEY 115
F+ TD + A T SS +P+Y RLLPCPS PPR+EHLV+SEGGPVLE
Sbjct: 60 --------FSTTDAGNLTA--TSSSDSFPKYDRLLPCPSHKNPPRIEHLVISEGGPVLEL 109
Query: 116 ICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGK 175
IC+ L+LPPL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGK
Sbjct: 110 ICKALDLPPLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGK 169
Query: 176 TVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
TVREAQKTFR+THVDQ VE GTYLRVHVHPKRFPR Y+IDW SRIIAV ES+VVLDKPAG
Sbjct: 170 TVREAQKTFRVTHVDQFVEPGTYLRVHVHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAG 229
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
TSVGGTTDNIEESCATFA+RALG+TTPL TTHQIDNCTEGCVVLART++YCSIFH KIRE
Sbjct: 230 TSVGGTTDNIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKDYCSIFHGKIRE 289
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSE 331
KKVKKLYLAL +PLP GI+THYMRPIN+APRL+SE
Sbjct: 290 KKVKKLYLALAASPLPTGIITHYMRPINMAPRLISE 325
>gi|449454720|ref|XP_004145102.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/337 (65%), Positives = 263/337 (78%), Gaps = 13/337 (3%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIREKKV KLYLAL PLP GIM
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIM 308
Query: 316 THYMRPINIAPRLVS----EGKTIFGLALM-IREMVW 347
THYMRP N+APRLVS +G + L ++ RE+ W
Sbjct: 309 THYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSW 345
>gi|449488373|ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
sativus]
Length = 475
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/337 (65%), Positives = 263/337 (78%), Gaps = 13/337 (3%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIREKKV KLYLAL PLP GIM
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIM 308
Query: 316 THYMRPINIAPRLVS----EGKTIFGLALM-IREMVW 347
THYMRP N+APRLVS +G + L ++ RE+ W
Sbjct: 309 THYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSW 345
>gi|356557901|ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
max]
Length = 473
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/328 (68%), Positives = 257/328 (78%), Gaps = 10/328 (3%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYK---SNVVLSFSSSNRNFVCESWKRHV 63
S +F+ + RSL P + R + + A+ N K S S +SN E+
Sbjct: 5 SMLFSGSCRSLAMPAAA-RAVRISRAALVNNRNKHPPSWCCRSSHNSNTALAGEA----E 59
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
F TD + A T SS + +Y RLLPCPS PPR+EHLVVSEGGPVLE+IC+ L+LP
Sbjct: 60 FLTTDAGILNA--TSSSDSFRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLP 117
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
PL+V+DLI FGAVYYALVCP+PP AT EQ+RVFKEVT+PSVL KR+SIKGKTVREAQKT
Sbjct: 118 PLYVSDLIQFGAVYYALVCPQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKT 177
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FR+THVDQ VE GTYLRVHVHPKR PRCY+IDW SRII V ES+VVLDKPAGTSVGGTTD
Sbjct: 178 FRVTHVDQFVEPGTYLRVHVHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTD 237
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
NIEESCATFA+RALG+TTPL TTHQIDNCTEGCVVLART+EYCS+FH KIREKKVKK YL
Sbjct: 238 NIEESCATFATRALGMTTPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYL 297
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE 331
AL PLP GI+THYMRPI++APRL+SE
Sbjct: 298 ALAAFPLPTGIITHYMRPIDMAPRLISE 325
>gi|297799888|ref|XP_002867828.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297313664|gb|EFH44087.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 476
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/344 (64%), Positives = 266/344 (77%), Gaps = 10/344 (2%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASC---HRNIYKSNVVLSFSSSNRNFVCESWKRHV 63
S T R+L APVSLLRTLAST + N Y+ + F SS + F C S +
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTCITTTLFRTNKYQYKIPPRFISSPKRFTCLSLHK-- 60
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNL 122
TD+ ++ S+ GYPEY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+L
Sbjct: 61 ---TDSQNQTTLSSSSTSGYPEYNRLMPCPAHNLPPRIEHMVVLEDDVLVSEFISKQLDL 117
Query: 123 PPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQK 182
PPL+V+DLI FGAV+YALVCPKPP TATPEQ+ +F+EVT PSVL KRSSIKGKTVREAQK
Sbjct: 118 PPLYVSDLIRFGAVHYALVCPKPPPTATPEQIELFEEVTCPSVLKKRSSIKGKTVREAQK 177
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
TFR+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTT
Sbjct: 178 TFRVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTT 237
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
DNIEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY
Sbjct: 238 DNIEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLY 297
Query: 303 LALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMV 346
AL APLP GI++HYMRP N+APRLVSE +I G L E++
Sbjct: 298 RALAAAPLPTGIISHYMRPKNMAPRLVSE-DSIKGWHLCQLEVL 340
>gi|15234586|ref|NP_193908.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
gi|75212600|sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|4455285|emb|CAB36821.1| hypothetical protein [Arabidopsis thaliana]
gi|7268974|emb|CAB81284.1| hypothetical protein [Arabidopsis thaliana]
gi|23296381|gb|AAN13057.1| unknown protein [Arabidopsis thaliana]
gi|110741616|dbj|BAE98756.1| hypothetical protein [Arabidopsis thaliana]
gi|332659101|gb|AEE84501.1| RNA pseudourine synthase 6 [Arabidopsis thaliana]
Length = 472
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/342 (64%), Positives = 266/342 (77%), Gaps = 10/342 (2%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRNIYKSNV-VLSFSSSNRNFVCESWKRHVFT 65
S T R+L APVSLLRTLAST + +++SN F SS + F C S
Sbjct: 3 SPALTGGYRNLTAPVSLLRTLASTRVTT--PLFRSNKHSPRFISSPKRFTCLS-----LL 55
Query: 66 HTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVL-EYICRELNLPP 124
TD+ ++ S+ GY EY+RL+PCP+ N PPR+EH+VV E ++ E+I ++L+LPP
Sbjct: 56 KTDSQNQTTLSSSSNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 115
Query: 125 LFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTF 184
L+VADLI FGAV+YALVCPKPP TATPE++ +F+EVT PSVL KRSSIKGKTVREAQKTF
Sbjct: 116 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 175
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+TH +Q EAGTYLRVHVHPKR PRCY+IDW SRI+AVT+S+V+LDKPAGT+VGGTTDN
Sbjct: 176 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 235
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
IEESCATFASRAL L PL+TTHQIDNCTEGCVV ART+EYCS+FH KIR K+VKKLY A
Sbjct: 236 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 295
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMV 346
L APLP+GI++HYMRP N+APRLV+E +I G L E++
Sbjct: 296 LAAAPLPIGIISHYMRPKNMAPRLVAE-DSIQGWHLCQLEVL 336
>gi|255554953|ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542359|gb|EEF43901.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 395
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/246 (80%), Positives = 222/246 (90%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPSQN PPRVEHLVV E GPVL+YIC+ L+LPPLFVADLIHFGAV+YALVCP+P
Sbjct: 3 YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TATPEQ+R+F+E T PSVL KR+SIKGKTVREAQKTFR++ V Q +E GTYLRV+VHP
Sbjct: 63 PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+RFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTT+NIEE+CATFA+RALGLT PL+T
Sbjct: 123 RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
THQIDNCTEGCVVLART EYC +FH KIRE KVKKLYLAL P+PVG++THYMRP NI
Sbjct: 183 THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242
Query: 326 PRLVSE 331
PRLVSE
Sbjct: 243 PRLVSE 248
>gi|357511989|ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501298|gb|AES82501.1| RNA pseudourine synthase [Medicago truncatula]
Length = 462
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/268 (73%), Positives = 227/268 (84%), Gaps = 5/268 (1%)
Query: 67 TDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLF 126
D+ AI+ T YP+Y RLLPCPS PPR+EHLVVS+ GPVL+YIC+ L+LP LF
Sbjct: 46 NDSNAISETVT-----YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLF 100
Query: 127 VADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRI 186
VADLI FGAVY+ALV P+PP TAT EQ+R+F++VT+P VL KRSS+KGKT+REAQKTFR+
Sbjct: 101 VADLIQFGAVYFALVSPEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRV 160
Query: 187 THVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIE 246
T +Q VE GTYLRVHVHPKRFPRCY+IDW SRIIAV ES+VVLDKPAGTSVG TT NIE
Sbjct: 161 TDANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIE 220
Query: 247 ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
ESC TFA+RALGLTTPL TTHQIDNCTEGCVVLAR +EYCS+FH KIREKKVKK+YLAL
Sbjct: 221 ESCVTFATRALGLTTPLITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALA 280
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEGKT 334
+PLP+GI+ HYMRP N APRL+SEG +
Sbjct: 281 ASPLPIGIIKHYMRPTNTAPRLISEGNS 308
>gi|449471733|ref|XP_004153393.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 287
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/279 (67%), Positives = 223/279 (79%), Gaps = 8/279 (2%)
Query: 16 SLGAPVSLLRTLASTHASCHRNIYKSNVVLSFSSSNRNFVCESWKRHVFTHTDTAAIAAA 75
SL P + RT A+ AS + + + SFS +++ F CES + TD A
Sbjct: 17 SLNLPREVARTRANLSASISSTCFAA--LRSFSFNSKAFPCES------STTDVNVTQTA 68
Query: 76 TTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGA 135
T + GYP+YHRLLPC S N PPRVEHLVV EGGPV+EYI + L+LPP++VADLIHFGA
Sbjct: 69 TNSAENGYPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGA 128
Query: 136 VYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEA 195
VYYALVCP+PP TA+ E++R+FK+ T PS L R SIKGKT+REAQKTFRITH+D+ VE
Sbjct: 129 VYYALVCPQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEV 188
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
GTYLRV+VHPKRFPRCY++DW SRIIAVT+S+VVLDKPAGTSVGGTT+NIEE+C TFA+R
Sbjct: 189 GTYLRVYVHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATR 248
Query: 256 ALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
ALGLT+PL TTHQIDNCTEGCV+LART+EYCSIFHRKIR
Sbjct: 249 ALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIR 287
>gi|242051172|ref|XP_002463330.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
gi|241926707|gb|EER99851.1| hypothetical protein SORBIDRAFT_02g041930 [Sorghum bicolor]
Length = 480
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/249 (71%), Positives = 209/249 (83%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 74 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFISRSLGLPPLYAADLIKFGAVYYALVA 133
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE ++F+EVT+PS+L +R+SIKGKTVREAQKTFR+T DQ +EAGTYLRVH
Sbjct: 134 PQPPPYASPEHFKIFREVTEPSILRRRASIKGKTVREAQKTFRVTDPDQRLEAGTYLRVH 193
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY+IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALG+ TP
Sbjct: 194 VHPKRFPRCYEIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGMETP 253
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTTAP+ G +THYMRP+
Sbjct: 254 LLTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTAPVSTGTITHYMRPV 313
Query: 323 NIAPRLVSE 331
N APRLVSE
Sbjct: 314 NRAPRLVSE 322
>gi|414591093|tpg|DAA41664.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 474
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/249 (72%), Positives = 208/249 (83%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TSVGG TDNIEESCA F SRALGL TP
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATSVGGATDNIEESCAVFTSRALGLETP 251
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTTAP+ G +THYMRP+
Sbjct: 252 LLTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTAPVSTGTITHYMRPV 311
Query: 323 NIAPRLVSE 331
N APRLVSE
Sbjct: 312 NRAPRLVSE 320
>gi|226724674|sp|A3BN26.1|PUS6_ORYSJ RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 6; AltName:
Full=RNA-uridine isomerase 6; Flags: Precursor
gi|125601389|gb|EAZ40965.1| hypothetical protein OsJ_25447 [Oryza sativa Japonica Group]
Length = 477
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/254 (71%), Positives = 213/254 (83%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
GL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP+ GI+TH
Sbjct: 246 GLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAPVSTGIITH 305
Query: 318 YMRPINIAPRLVSE 331
YMRPIN APRLVSE
Sbjct: 306 YMRPINRAPRLVSE 319
>gi|357116152|ref|XP_003559847.1| PREDICTED: uncharacterized protein LOC100824239 [Brachypodium
distachyon]
Length = 986
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/249 (71%), Positives = 210/249 (84%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y R+LPCP+Q+ PPR+EHLV E ++I R L LPPL+VADLI FGAVYYALV
Sbjct: 580 YPAYDRILPCPAQDDPPRIEHLVAREDEAAGDFISRSLGLPPLYVADLIKFGAVYYALVA 639
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A PE +R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T Q +EAGTYLRVH
Sbjct: 640 PQPPPYAAPEHVRIFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPGQHLEAGTYLRVH 699
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262
VHPKRFPRCY IDW SR+IAVT+++VVL+KPA TSVGG TDNIEESC F SRALG+ +P
Sbjct: 700 VHPKRFPRCYQIDWKSRVIAVTDNYVVLNKPAATSVGGATDNIEESCVVFTSRALGVDSP 759
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
L TTHQIDNC+EGCVVL++T+E+CS+FH IREK+VKKLYLALTT P+ GI+THYMRP+
Sbjct: 760 LMTTHQIDNCSEGCVVLSKTKEFCSVFHGLIREKQVKKLYLALTTKPVSPGIITHYMRPL 819
Query: 323 NIAPRLVSE 331
N APRLVSE
Sbjct: 820 NRAPRLVSE 828
>gi|125559481|gb|EAZ05017.1| hypothetical protein OsI_27198 [Oryza sativa Indica Group]
Length = 333
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/266 (68%), Positives = 213/266 (80%), Gaps = 11/266 (4%)
Query: 78 PSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVY 137
P++ YP Y RLLPCP Q+ PPR+EHLV E +++I R L LPPL+VADLI FGAVY
Sbjct: 66 PATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVADLIKFGAVY 125
Query: 138 YALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT 197
YALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T +Q +EAGT
Sbjct: 126 YALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDPNQRLEAGT 185
Query: 198 YLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL 257
YLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC F SRAL
Sbjct: 186 YLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRAL 245
Query: 258 GLTTPLRTTHQIDNCTEG-----------CVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
GL TPL TTHQIDNC+EG VVL++T+E+CS+FH IREK+V K YLALT
Sbjct: 246 GLETPLMTTHQIDNCSEGWFVSYHFTSTTSVVLSKTKEFCSVFHGMIREKQVNKRYLALT 305
Query: 307 TAPLPVGIMTHYMRPINIAPRLVSEG 332
TAP+ GI+THYMRPIN APRLVSEG
Sbjct: 306 TAPVSTGIITHYMRPINRAPRLVSEG 331
>gi|115473865|ref|NP_001060531.1| Os07g0660400 [Oryza sativa Japonica Group]
gi|34395182|dbj|BAC83571.1| unknown protein [Oryza sativa Japonica Group]
gi|113612067|dbj|BAF22445.1| Os07g0660400 [Oryza sativa Japonica Group]
Length = 400
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/202 (75%), Positives = 176/202 (87%)
Query: 130 LIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHV 189
LI FGAVYYALV P+PP A PE +R+F+EVT+PSVL +R SIKGKTVREAQKTFR+T
Sbjct: 41 LIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDP 100
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
+Q +EAGTYLRVHVHPKRFPRCY+IDW SR+IAVT+++VVLDKPA TSVGG TDNIEESC
Sbjct: 101 NQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESC 160
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
F SRALGL TPL TTHQIDNC+EGCVVL++T+E+CS+FH IREK+V K YLALTTAP
Sbjct: 161 VVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAP 220
Query: 310 LPVGIMTHYMRPINIAPRLVSE 331
+ GI+THYMRPIN APRLVSE
Sbjct: 221 VSTGIITHYMRPINRAPRLVSE 242
>gi|168054605|ref|XP_001779721.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668919|gb|EDQ55517.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 180/247 (72%), Gaps = 2/247 (0%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RL+PCP+ + P RVEHL++ + G +++ IC EL+LPPL+V DLI FGAV+YAL CP P
Sbjct: 8 YDRLMPCPNYSLPARVEHLLIEKDGNIVDIICEELSLPPLYVVDLISFGAVFYALECPTP 67
Query: 146 PLTATPEQMRVFKEVTD--PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV 203
P A+PEQ+ ++ S +R S+KGKT++EAQKTFRI + +E+GTYLRVHV
Sbjct: 68 PPHASPEQLELYNRQVKLRASRKKERLSLKGKTLKEAQKTFRIASPSEYIESGTYLRVHV 127
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HPKR PR Y++DW SR+IA T+S VV+DKPAG SVGGT DN+EE CATF SRAL L PL
Sbjct: 128 HPKRGPRVYEVDWLSRVIAETDSFVVVDKPAGVSVGGTVDNLEEMCATFVSRALKLKKPL 187
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
THQID CTEGCVV A+T+ + + FH +RE+KV+K Y AL AP+ G HYMR
Sbjct: 188 ILTHQIDTCTEGCVVFAKTKAFSTHFHMLLRERKVRKEYTALAAAPVAPGHHVHYMRSDR 247
Query: 324 IAPRLVS 330
APR+VS
Sbjct: 248 YAPRMVS 254
>gi|147833193|emb|CAN68642.1| hypothetical protein VITISV_030809 [Vitis vinifera]
Length = 400
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/328 (51%), Positives = 195/328 (59%), Gaps = 93/328 (28%)
Query: 7 SSIFTNNGRSLGAPVSLLRTLASTHASCHRN---IYKSNVVLSFSSSNRNFVCESWKRHV 63
SS++ +N RS G PV+L RTLAS++ R+ ++ SN N C
Sbjct: 16 SSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSN----------NPTC------- 58
Query: 64 FTHTDTAAIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLP 123
T TA+ +A T S GYPEYHRLLPCPSQN PPRVEHLVVSEGG
Sbjct: 59 -TRELTASSDSANTSSVNGYPEYHRLLPCPSQNGPPRVEHLVVSEGG------------- 104
Query: 124 PLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKT 183
FVADLIHFGAVYYALVCP+PP +ATPEQ+R+FKEVT PSVL KR SIKGKT+REAQKT
Sbjct: 105 --FVADLIHFGAVYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKT 162
Query: 184 FRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
FRIT V++ VEAGTYLRVHVHPKRFPRCY+IDW SRIIAV
Sbjct: 163 FRITDVNEFVEAGTYLRVHVHPKRFPRCYEIDWKSRIIAV-------------------- 202
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
TE VVL + EKKVKKLY
Sbjct: 203 -----------------------------TESYVVLDKPA--------GTSEKKVKKLYR 225
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSE 331
AL AP+P+GI+THYMRP+NIAPRL+SE
Sbjct: 226 ALAAAPMPIGIVTHYMRPVNIAPRLISE 253
>gi|302796533|ref|XP_002980028.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
gi|300152255|gb|EFJ18898.1| hypothetical protein SELMODRAFT_111763 [Selaginella moellendorffii]
Length = 428
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 182/269 (67%), Gaps = 25/269 (9%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+EESC TFASRALG+ PL THQIDNCTEGCVVLA+ +++ S F+R +R +KV K YL
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEGCVVLAKDKDFVSNFNRLLRTRKVDKRYLV 236
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGK 333
L +P+P+GI++HYMRP + AP L+S+ K
Sbjct: 237 LAASPVPLGIVSHYMRPDHFAPHLLSQDK 265
>gi|302822543|ref|XP_002992929.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
gi|300139274|gb|EFJ06018.1| hypothetical protein SELMODRAFT_136180 [Selaginella moellendorffii]
Length = 428
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 181/269 (67%), Gaps = 25/269 (9%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCP + P R+EHL V + G V++Y+C+ L+LP L+V DLI FGAVY+AL C +P
Sbjct: 1 YDRLLPCPGDDLPVRIEHLFVEKNGNVVDYLCQALSLPSLYVNDLIEFGAVYHALRCSEP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P TA E M +K ++ +KG +V+E+QK RI + VEAG+Y+RVHVHP
Sbjct: 61 PETAPKEHMEFYKR----ALAMDLPRVKGMSVQESQKARRIVSKHEEVEAGSYMRVHVHP 116
Query: 206 KRFPR---------------------CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+RFPR CY++DW SRI+A + VVLDKPAG SVGG+ DN
Sbjct: 117 RRFPRQETLAGCFFSLVYTRVFFVVRCYEVDWKSRILAENDLFVVLDKPAGVSVGGSVDN 176
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+EESC TFASRALG+ PL THQIDNCTEGCVVLA+ +++ S F+R +R +KV K YL
Sbjct: 177 LEESCVTFASRALGMAFPLLVTHQIDNCTEGCVVLAKDKDFVSNFNRLLRTRKVDKRYLV 236
Query: 305 LTTAPLPVGIMTHYMRPINIAPRLVSEGK 333
L P+P+GI++HYMRP + AP L+S+ K
Sbjct: 237 LAAFPVPLGIVSHYMRPDHFAPHLLSQDK 265
>gi|302796789|ref|XP_002980156.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
gi|300152383|gb|EFJ19026.1| hypothetical protein SELMODRAFT_112010 [Selaginella moellendorffii]
Length = 415
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 188/273 (68%), Gaps = 9/273 (3%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
PL TP+Q+++FK+ + K + ++ EA+K R+T + E G+Y+RVHVHP
Sbjct: 61 PLNLTPQQVQLFKKASP----KKWPVLDRVSLVEARKPERVTDPNHYAEPGSYIRVHVHP 116
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
KRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL T
Sbjct: 117 KRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPLVT 176
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
THQ+DNCTEGC++LA+ E+ S FHR ++E KV+K YLAL AP+P+G HYMR
Sbjct: 177 THQLDNCTEGCLLLAKNNEFASRFHRLLKENKVEKFYLALAAAPVPLGKTAHYMRSDKYP 236
Query: 326 PRLVSEGKTI-FGLALM----IREMVWKFEACI 353
PR++S + + + L +M +++ W EA +
Sbjct: 237 PRIMSNNERLGWQLCVMHVLECKQVPWPSEAAL 269
>gi|302822493|ref|XP_002992904.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
gi|300139249|gb|EFJ05993.1| hypothetical protein SELMODRAFT_136149 [Selaginella moellendorffii]
Length = 415
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 188/273 (68%), Gaps = 9/273 (3%)
Query: 86 YHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP 145
Y RLLPCPS PR+EHL+V + G VL + L LP +VADL+ FGAV++AL CPKP
Sbjct: 1 YKRLLPCPSTQLGPRIEHLLVKKKGTVLSIVSEVLKLPSEYVADLMSFGAVHHALRCPKP 60
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
PL TP+Q+++FK+ + K + ++ EA+K R+T + E G+Y+RVHVHP
Sbjct: 61 PLNLTPQQVQLFKKASP----KKWPVLDRVSLVEARKPERVTDPNHYAEPGSYIRVHVHP 116
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
KRFPRCY++DW SRIIA ES VVL+KPAG SVGG+ DN+EE C+TFA+RAL L PL T
Sbjct: 117 KRFPRCYEVDWRSRIIANEESFVVLNKPAGVSVGGSVDNVEEICSTFATRALNLEQPLVT 176
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
THQ+DNCTEGC++LA+ E+ S FHR ++E KV+K YLAL AP+P+G HYMR
Sbjct: 177 THQLDNCTEGCLLLAKNNEFASRFHRFLKENKVEKFYLALAAAPVPLGKTAHYMRSDKYP 236
Query: 326 PRLVSEGKTI-FGLALM----IREMVWKFEACI 353
PR++S + + + L +M +++ W EA +
Sbjct: 237 PRIMSNNERLGWQLCVMHVLECKQVPWPSEAAL 269
>gi|116793412|gb|ABK26738.1| unknown [Picea sitchensis]
Length = 292
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/168 (68%), Positives = 141/168 (83%), Gaps = 1/168 (0%)
Query: 71 AIAAATTPSSYGYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADL 130
AI+ A+ P++ YPEY+RLLPCPSQ+ R+EHLV+ E G V++ IC+ LN P L+VADL
Sbjct: 116 AISTASLPTT-RYPEYNRLLPCPSQSQSSRIEHLVMEETGNVVDLICQALNFPHLYVADL 174
Query: 131 IHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVD 190
IHFGAVY ALVCP PP TAT EQ+++FK+VT P+ L KR+S+KGKTVREAQKTFRIT+
Sbjct: 175 IHFGAVYCALVCPTPPPTATAEQVKIFKKVTAPAALKKRASLKGKTVREAQKTFRITNAS 234
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
+ VEAG+YLRVHVHPKRFPRCY++DW SR+IA TES+VVLDKP GTSV
Sbjct: 235 EYVEAGSYLRVHVHPKRFPRCYEVDWLSRVIAETESYVVLDKPVGTSV 282
>gi|414591092|tpg|DAA41663.1| TPA: hypothetical protein ZEAMMB73_582506 [Zea mays]
Length = 232
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/155 (69%), Positives = 125/155 (80%)
Query: 83 YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142
YP Y RLLPCP Q+ PPR+EHLV E ++I R L LPPL+ ADLI FGAVYYALV
Sbjct: 72 YPVYDRLLPCPLQDDPPRIEHLVAREDEVAADFIARSLGLPPLYAADLIEFGAVYYALVA 131
Query: 143 PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202
P+PP A+PE R+F+EVT+PSVL +R+SIKGKTVREAQKTFR+T +Q +EAGTYLRVH
Sbjct: 132 PQPPPYASPEHFRLFREVTEPSVLRRRASIKGKTVREAQKTFRVTDPNQRLEAGTYLRVH 191
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
VHPKRFPRCY IDW SR+IAV + +VVLDKPA TS
Sbjct: 192 VHPKRFPRCYQIDWKSRVIAVADEYVVLDKPAATS 226
>gi|384250670|gb|EIE24149.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 457
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 120/240 (50%), Gaps = 54/240 (22%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKE 159
RVEH++V+E G + E + L+LP FV +LI FGAV++ CP P+ A P
Sbjct: 67 RVEHILVNEPGVLSEVVAAALDLPQDFVTELIRFGAVHW---CPVLPVKAGPP------- 116
Query: 160 VTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR 219
VE Y+RVHVHPKRFP Y +DW +R
Sbjct: 117 ---------------------------------VEKYAYVRVHVHPKRFPSAYKVDWKAR 143
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ VV++KPAG V T DNI ESC ++AL +PL +TH++D CTEG VVL
Sbjct: 144 IVHAAPDFVVINKPAGVPVVPTVDNILESCLACTAQALDEASPLLSTHRLDTCTEGLVVL 203
Query: 280 ARTQEYCSIFHRKIRE-KKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGL 338
R E+ + F++ + + ++K Y ALT P G + HY V+ GK + GL
Sbjct: 204 GRKYEFVAAFNKLLGQPGALQKYYRALTKQAPPTGGLVHY----------VTVGKRVKGL 253
>gi|303272809|ref|XP_003055766.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463740|gb|EEH61018.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 483
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 121/253 (47%), Gaps = 47/253 (18%)
Query: 100 RVEHLVVSEG--GPVLEYICRELNLPPL---FVADLIHFGAVYYALVCPKPPLTATPEQM 154
RV+H+V+ GP + L LP + + LI FGAVYY+ V P P A+
Sbjct: 51 RVKHVVLGPDAFGPAATIVASALGLPDVDARYARQLIEFGAVYYSDVPPPRPRAASGSGS 110
Query: 155 RVF-KEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYD 213
DPS +R + +++V G YLRVHVHPKRFP
Sbjct: 111 SSSTNNKRDPSATPQR----------------VKSANRVVHPGGYLRVHVHPKRFPAARA 154
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLT------------- 260
DW IIA ++ VV+DKPAG +VG T DN +E A +RALG
Sbjct: 155 TDWRRAIIAAGDAFVVVDKPAGVNVGFTVDNAKECVAQCVARALGDAFAENGSDSSSTDS 214
Query: 261 ------------TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
TPL TH++D T G +VLAR E+ F+ +RE+KV+K Y ++ A
Sbjct: 215 STECSSWGWADATPLIVTHRLDAATSGVLVLARDVEFARHFNDALRERKVQKTYACVSEA 274
Query: 309 PLPVGIMTHYMRP 321
+PVG+M H+ P
Sbjct: 275 RVPVGVMEHWTDP 287
>gi|145344926|ref|XP_001416975.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577201|gb|ABO95268.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 116/250 (46%), Gaps = 36/250 (14%)
Query: 88 RLLPCPSQNCPPRVEHLVVSEGGP------VLEYICRELN---LPPLFVADLIHFGAVYY 138
RL P ++ P +V HLVV + G V +Y+ + L + + +L+ GAV++
Sbjct: 9 RLFPL-AEPLPAKVAHLVVDDDGGTGTALTVTKYLAKTLGDEGVDETYAEELLDIGAVWF 67
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
A P L P R + LS R + D + AG Y
Sbjct: 68 ATAQPPRELRGVPRTARARR-------LSPRDA------------------DAPLRAGNY 102
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
LRVHV PKRFP + +DW + ++ V E +V KPAG SV T DN++ESC RA G
Sbjct: 103 LRVHVQPKRFPAAFAVDWKACVLKVGEGYVCAHKPAGVSVVPTVDNVKESCLAMLERAAG 162
Query: 259 LTTP-LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
L L+ H++D TEG +VL T + F + ++ V K+Y LT +P G+ H
Sbjct: 163 LKEGTLKPIHRLDVGTEGVLVLGTTSAFAKEFGDMLADRSVTKVYRVLTENAVPRGVHIH 222
Query: 318 YMRPINIAPR 327
P PR
Sbjct: 223 DAEPATEGPR 232
>gi|307111759|gb|EFN59993.1| hypothetical protein CHLNCDRAFT_56496 [Chlorella variabilis]
Length = 476
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 24/216 (11%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVAD---------------------LIHFGAVYY 138
RVEH++ G + E + L LP +D L+ FGA++
Sbjct: 29 RVEHVLAPRDGRLSELVTESLQLPQARGSDGLACCGPQHPHGKPFAGAAELLLRFGAIH- 87
Query: 139 ALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTY 198
CP P + ++ ++ +++ +T + D V Y
Sbjct: 88 --TCPVAPTLPASILASMSQQQAAQVQRRRQEALQRAGNSSQARTPQRAAADAEVARHAY 145
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH+HPKRFP Y +DW R++A TE + V+ KPAG T DN E A++ALG
Sbjct: 146 IRVHLHPKRFPAAYSVDWLDRLVASTEEYAVVSKPAGVPAAPTVDNWLECAPACAAQALG 205
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
L PL TH++D CTEG +VL RT+ + + F+ ++
Sbjct: 206 LPQPLLITHRLDQCTEGLLVLGRTKSFVARFNELVK 241
>gi|302836900|ref|XP_002950010.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
gi|300264919|gb|EFJ49113.1| hypothetical protein VOLCADRAFT_90418 [Volvox carteri f.
nagariensis]
Length = 421
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 192 IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT 251
+V G Y+RVH PKR+P CY DW R++ +VV++KPAG N E A+
Sbjct: 115 VVPRGHYVRVHPRPKRYPACYCADWPRRVLHCDSDYVVVNKPAGLPCMRHESNALEELAS 174
Query: 252 FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI--REKKVKKLYLALTTAP 309
RALG+ L H++D T G VVL+RT+E F R + RE + K Y LT +P
Sbjct: 175 CVGRALGMEG-LEVCHRLDQWTTGVVVLSRTKEANKAFKRSLQDREAGLIKTYKGLTYSP 233
Query: 310 LPVGIMTHYM 319
+P+G + HYM
Sbjct: 234 VPLGTLEHYM 243
>gi|389548702|gb|AFK83590.1| pseudouridine synthase [uncultured bacterium]
Length = 297
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D+ + G Y+RVH++PKRFP IDW + I+ ++ VV++KPAG V T DN E+
Sbjct: 56 DRALSPGQYIRVHLNPKRFP-VEGIDWATTIVHRDKAFVVVNKPAGIPVHATLDNQVENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
ALG L T ++D G +V+ARTQE+ F+R + ++K+KK Y AL T
Sbjct: 115 LHQLRVALG--GALYVTQRLDTDVSGLIVVARTQEFQRQFNRLLADRKLKKRYRALVTTA 172
Query: 310 LPVGIMTHYMRPINIAPRLVS 330
VG HYM P +P+ ++
Sbjct: 173 PEVGRHIHYMEPSERSPKTIA 193
>gi|223999965|ref|XP_002289655.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
gi|220974863|gb|EED93192.1| hypothetical protein THAPSDRAFT_268629 [Thalassiosira pseudonana
CCMP1335]
Length = 404
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
R+ +R +E GT +RV+ HP+RFP CYD +R++ + +V+DKP
Sbjct: 97 RQMSLRYRRILTPSTIEPGTDIRVYPHPRRFPSCYDFADPNRLLYEDTTFIVVDKPPMLP 156
Query: 238 VGGTTDNIEESCATFASRALGLTTPLRTT-----------HQIDNCTEGCVVLARTQEYC 286
N EE C + LG P +T H++D+C GC+VL++
Sbjct: 157 SQPEPSNYEECCPGCVNTLLG---PFKTIAGEDVARPLICHRVDSCVGGCLVLSKDGNGQ 213
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
+F R++K+KKLYLA+TT P+P+G+ H+M
Sbjct: 214 RVFSDLQRQRKIKKLYLAVTTEPVPLGMHVHWM 246
>gi|424513024|emb|CCO66608.1| predicted protein [Bathycoccus prasinos]
Length = 417
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 40/242 (16%)
Query: 93 PSQNCPPRVEH---LVVSEGGPVLEYICREL-NLPPLFVADLIHFGAVYYALVCPKPPLT 148
PS+ P RVEH +S + E + E+ ++ + LI FGAVY
Sbjct: 62 PSEKRPARVEHCDLKSLSNNKKLSEALHGEITDVTERYFQALIEFGAVY----------- 110
Query: 149 ATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGT--YLRVHVHPK 206
++D L + ++ TV+ K R D I+ AG+ Y+R HV+P+
Sbjct: 111 -----------ISDE--LEEDFQLEPNTVKHKMKRIR---SDVILPAGSRHYVRAHVNPR 154
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL------- 259
RF + W I+ T+ VV+ KP+G V + DN +E+ AL +
Sbjct: 155 RFLAAGETRWMDCILKETDDFVVVMKPSGLPVSPSVDNAKENVLRCVWSALRVGNENDDE 214
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
T L TH++D T G VV+A+ + SIF + +R+ V+K YLALT P +G+MTH
Sbjct: 215 ATKLFPTHRLDVTTSGVVVVAKNSKAASIFSKILRDGFVEKQYLALTENPAKIGLMTHEY 274
Query: 320 RP 321
P
Sbjct: 275 EP 276
>gi|397620710|gb|EJK65863.1| hypothetical protein THAOC_13233 [Thalassiosira oceanica]
Length = 470
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 174 GKTVRE---AQKTFRITHV--DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV 228
G+T+ E Q++ R V +E GT +R++ HP+RFP CY+ R + + +
Sbjct: 162 GETLEEYVARQESLRYRRVLTASTIEPGTDIRIYPHPRRFPSCYEFSDPQRKLYEDTTFI 221
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALG---------LTTPLRTTHQIDNCTEGCVVL 279
V+DKP N EE C + +G + PL H++D+C GCVVL
Sbjct: 222 VVDKPPMLPTQPEPSNYEECCPGCVNLLMGPFHTIAGEEVARPL-ICHRVDSCVGGCVVL 280
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM 319
++ +F R++K+KKLYLA+TT P+P+G+ H+M
Sbjct: 281 SKDGNGQRVFSDLQRQRKIKKLYLAVTTEPVPLGMHVHWM 320
>gi|255071535|ref|XP_002499442.1| predicted protein [Micromonas sp. RCC299]
gi|226514704|gb|ACO60700.1| predicted protein [Micromonas sp. RCC299]
Length = 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 108/271 (39%), Gaps = 85/271 (31%)
Query: 101 VEHLVVSEGGPVLEYICREL---NLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVF 157
VEH+++ GG + + + ++ V L+ GAVY A V P
Sbjct: 62 VEHVILDAGGLIAAVLPAHIPGDDVDETTVTQLVRIGAVYAADVPPP------------- 108
Query: 158 KEVTDPSVLSKRSSIKGKT-VREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDW 216
K KT VR + + R+ D+ + G Y+RVHVHPKRFP DW
Sbjct: 109 ---------------KDKTGVRRSLRPARVNSPDRALPNGAYVRVHVHPKRFPAAVACDW 153
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF-ASRALGLTTPLRTT--------- 266
RIIA V +DKP G G + DN E CAT+ +RAL L TT
Sbjct: 154 GGRIIARGRDWVAVDKPPGVPAGPSLDNATE-CATYRVARAL---RRLETTDNDDDDDDE 209
Query: 267 ---------------------------------------HQIDNCTEGCVVLARTQEYCS 287
H++D T G +VLAR + +
Sbjct: 210 EEEDEEKKKKKKEEEEGGHSWWGGDGDGDGDGGTTLTTTHRLDVATSGVLVLARRSSFAA 269
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
F+ +R ++V K Y +T +PVG++ H+
Sbjct: 270 EFNDALRRRRVTKTYECVTARAVPVGVLEHW 300
>gi|426404290|ref|YP_007023261.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860958|gb|AFY01994.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
str. Tiberius]
Length = 283
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVANKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA-LTTA 308
++ + L T + TH++D T G +V A+T E+ S F++ + +++ K+Y A +
Sbjct: 115 QSYLQQTLNQT--VYVTHRLDVPTRGLIVYAKTPEFQSEFNKLLIAREMNKIYRARVQGQ 172
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMVWKFEACIL 354
L G++ HYM P AP++VS +EM K++ C+L
Sbjct: 173 NLSTGLLQHYMEPSPRAPKVVS------------KEMQPKWQECLL 206
>gi|299115628|emb|CBN75829.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 505
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASR 255
G YLRVH P+ FP +DW+ RI+ E VV+DKPAG T DN ++C AS
Sbjct: 151 GAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASL 210
Query: 256 ALG--------LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
A+ L PL ++D CT G VV AR +E + R ++VKK YLAL T
Sbjct: 211 AVAGMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLT 270
Query: 308 --APLPVGIMTHYMR 320
+P G M H R
Sbjct: 271 PGPAVPTGSMAHCCR 285
>gi|219115335|ref|XP_002178463.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410198|gb|EEC50128.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 497
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 182 KTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGT 241
+ FR +EAGT LRV+ +P+RFP C ++ R++ + +V+DKP
Sbjct: 195 QRFRRILKPSWIEAGTDLRVYPNPRRFPACEELT-RDRLLYEDTTFIVVDKPPLLPTQPD 253
Query: 242 TDNIEESCATFASRALGLTTPLRTT--------HQIDNCTEGCVVLARTQEYCSIFHRKI 293
+ N E C LG T ++ H++D+C GCVVL++ +F
Sbjct: 254 SSNYVECCPGCVQDNLGPFTDIQGNEVVRPLLCHRVDSCVGGCVVLSKDGNGQKVFQEMQ 313
Query: 294 REKKVKKLYLALTTAPLPVGIMTHYM 319
RE+K++KLYLA+TT P+P+G+ H+M
Sbjct: 314 RERKLRKLYLAVTTQPVPLGMHLHWM 339
>gi|422294702|gb|EKU22002.1| ribosomal pseudouridine [Nannochloropsis gaditana CCMP526]
Length = 381
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 14/160 (8%)
Query: 181 QKTFRITHVDQ-----IVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
Q FR TH+ + V G RV++ P+RFP C ID+ R+I + +++DKP G
Sbjct: 160 QNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECM-IDYTFRVIWENDDLLLVDKPPG 218
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
N E+ AS +LGL L +++D T G V LA+T + + F +IR
Sbjct: 219 CPCSLHVSNALEALDVAASASLGLN--LIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRR 276
Query: 296 KKVKKLYLALTTAPLPVGIMTHYMRPINI-----APRLVS 330
++ K Y AL T P+PVG++ HYM P I APR +S
Sbjct: 277 DRLGKRYKALLTGPVPVGLLEHYM-PGKIIHRRPAPRAIS 315
>gi|428181430|gb|EKX50294.1| hypothetical protein GUITHDRAFT_104105 [Guillardia theta CCMP2712]
Length = 296
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 32/198 (16%)
Query: 116 ICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGK 175
I E + V +L+ FGAVY PP A + K+S +K
Sbjct: 11 IMEETGMDGKLVKELVKFGAVYTG-----PPQDAMDK---------------KQSPVK-- 48
Query: 176 TVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG 235
VR Q D + G+Y+RVH PKR Y IDW++R+I ++ +V+DKP G
Sbjct: 49 AVRTMQ--------DVELLPGSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPG 100
Query: 236 TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE 295
T DN E + + ++ L T ++D CT G ++ A+T+++C ++ + E
Sbjct: 101 VPSLTTIDNGVECVMSQVEKMRNIS--LMPTSRLDVCTAGVLIFAKTRDFCLKTNKAMSE 158
Query: 296 KKVKKLYLALTTAPLPVG 313
++ K+YL L+ LP G
Sbjct: 159 RRCDKVYLLLSERELPRG 176
>gi|42523804|ref|NP_969184.1| RNA pseudouridylate synthase [Bdellovibrio bacteriovorus HD100]
gi|39576011|emb|CAE80177.1| putative RNA pseudouridylate synthase [Bdellovibrio bacteriovorus
HD100]
Length = 283
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D V G Y+RVH P+RF D W SRI+ E VV +K +G V + DN+ E+
Sbjct: 56 DSSVSVGDYIRVHTKPRRFT-ANDGQWRSRIVFENEHFVVTNKISGLPVHASVDNLHENL 114
Query: 250 ATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA- 308
++ + L + TH++D T G +V A++ E+ + F++ + +++ K+Y A
Sbjct: 115 QSYLQQT--LHQNVYVTHRLDVPTRGLIVYAKSPEFQTEFNKLLIAREMNKIYRARVQGH 172
Query: 309 PLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREMVWKFEACIL 354
L G++ HYM P AP++VS +E+ K++ C+L
Sbjct: 173 SLSTGLLQHYMEPSPRAPKVVS------------KELQPKWQECLL 206
>gi|384252304|gb|EIE25780.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 363
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 110 GPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKR 169
G +LE +L V+ LI GAVYY T P Q ++ + +
Sbjct: 43 GTLLEIAAEVSDLTLDVVSGLIDLGAVYYGE-------TEAPGQAPKWRRANRLAEAAPH 95
Query: 170 SSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV 229
IK G ++RVH +PKR+P DW +R+I + V
Sbjct: 96 HPIK---------------------QGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCV 134
Query: 230 LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIF 289
++KPA V N E+ +ALGL L H++D CT G ++L R ++ F
Sbjct: 135 VNKPARIPVQSHESNSVETVPRCLVKALGLEH-LWMLHRLDYCTTGVLLLGRNEQSSRRF 193
Query: 290 HRKIREKKVKKLYLALTTAPLPVGI-MTHYMRP 321
+ + KV+K Y LT P+ G+ + HYM P
Sbjct: 194 MQDMEAHKVQKQYKVLTPVPVEAGLEVVHYMYP 226
>gi|255088607|ref|XP_002506226.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
gi|226521497|gb|ACO67484.1| RNA pseudouridylate synthase [Micromonas sp. RCC299]
Length = 481
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 191 QIVEAGTYLRVHVHPKRFPR-CY-DID-WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+IV G +RVH P+R+ C+ D W R++ ++ +V++KP N E
Sbjct: 153 KIVAKGEVIRVHKRPRRYRHACWLGADAWRHRVVHEDDAILVVNKPHRLPSMAHESNGVE 212
Query: 248 SCATFASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE----KKVKKLY 302
CA R+LGL+ + LR TH++D+ T G +VL +T F+ + + K++ K Y
Sbjct: 213 HCAGCLERSLGLSPSTLRVTHRLDSSTSGVLVLGKTATAVREFNDSVAKTPGSKEIVKSY 272
Query: 303 LALTTA--PLPVGIMTHYMRPINIAP 326
AL A +P+G+MTH+M P P
Sbjct: 273 AALVYAKHAVPLGLMTHWMYPGPFGP 298
>gi|449467849|ref|XP_004151635.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like, partial
[Cucumis sativus]
Length = 188
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 295 EKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVS----EGKTIFGLALM-IREMVW 347
EKKV KLYLAL PLP GIMTHYMRP N+APRLVS +G + L ++ RE+ W
Sbjct: 1 EKKVTKLYLALVAVPLPKGIMTHYMRPNNLAPRLVSRDCIDGWNLCQLEVLECREVSW 58
>gi|298713714|emb|CBJ48905.1| putative RNA pseudouridylate synthase [Ectocarpus siliculosus]
Length = 555
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 43/194 (22%)
Query: 91 PCPSQNCPPR--VEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKP--- 145
P P N PP V H GP+ + L LI FG VYY KP
Sbjct: 37 PLPRLNAPPHDYVRHAYSPRAGPLWSSVAAFLGWTEELARGLITFGGVYY-----KPGGA 91
Query: 146 PLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHP 205
P A P K DP D+ VE G YLR+ P
Sbjct: 92 PALAKP------KRELDP--------------------------DREVEIGEYLRIFPEP 119
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
+R+P +DW S+I+ ++++KPAG T DN E+ R++ L
Sbjct: 120 RRYPAFLGVDWESKIVYDCAGVMLVNKPAGVPAHATVDNFAENMLA-GIRSVRPDLDLLL 178
Query: 266 THQIDNCTEGCVVL 279
H++D T G V++
Sbjct: 179 PHRLDIDTSGLVIV 192
>gi|219120675|ref|XP_002181071.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407787|gb|EEC47723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 607
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 182 KTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRI---------IAVTES----HV 228
K R+ ++AG YLRVH HP+RFP + DW+ I + V E +
Sbjct: 131 KPVRLDQTAPALQAGDYLRVHHHPRRFPHAHRYDWSKSIHDTSGDKPGVIVAEDTDKGWL 190
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP--------LRTTHQIDNCTEGCVVLA 280
V+ KP+ V T DN E+ A +A +P + T ++D T G VV+A
Sbjct: 191 VIRKPSMVPVHMTVDNCRENVADCLKQARAWQSPTADARDVYITTPQRLDQNTSGLVVVA 250
Query: 281 RTQEYCSIFHRKIREKKVKKL 301
+ + + F +R K ++L
Sbjct: 251 THKPFAAYFASLLRSKTARQL 271
>gi|281206797|gb|EFA80981.1| hypothetical protein PPL_05814 [Polysphondylium pallidum PN500]
Length = 702
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ + ++ +EA + +++ +P+ + + ID ++ + +V+DKP G S+G DN
Sbjct: 374 RVFNYEETIEADSLVKIFFYPRHYSTDH-IDLQRLVVYENDQFMVIDKPHGVSIGPVIDN 432
Query: 245 IEESCATF--ASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIRE-----KK 297
+ SR LTT + H++D T G VL + +Y S F+ +R KK
Sbjct: 433 YHNNINHLIKTSRPSELTT-IYNPHRLDFQTRGLCVLVKDSDYISQFNLLLRNRDNISKK 491
Query: 298 VKKLYLALTTAP------LPVGIMTHYMRPINIAPRLVSEGK 333
+ Y + + G+ THYMRP + +S K
Sbjct: 492 YRAFYKQVDNLQEDKDDIIEPGLYTHYMRPTKSTFKEMSHSK 533
>gi|66818229|ref|XP_642774.1| hypothetical protein DDB_G0277359 [Dictyostelium discoideum AX4]
gi|60470894|gb|EAL68866.1| hypothetical protein DDB_G0277359 [Dictyostelium discoideum AX4]
Length = 386
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 188 HVDQIVEAGTYLRVHVHPKRFPRCYDIDW---NSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+D+++ G+ L+ +P R ID+ N II + +V+DKP G +VG D+
Sbjct: 83 QIDKVINKGSLLKYFFYP-RVNSTDHIDFKNFNKYIIFENQYFLVIDKPHGINVGPIVDH 141
Query: 245 IEESCATFASRALG-------LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKK 297
+ + +F L L H +D+ T G V+A+ + S F++ + +KK
Sbjct: 142 LHNNFTSFVKDWLKKRNNNNDNNLILYNPHNLDSPTRGLFVIAKDFNFLSKFNKLLSDKK 201
Query: 298 VKKLYLALT-------TAPLPVGIMTHYMRPINIAPR 327
V K Y A + GI H+M N +P+
Sbjct: 202 VSKKYKAFIPIKENEENIEIKPGIYKHFMEITNHSPK 238
>gi|330840802|ref|XP_003292398.1| hypothetical protein DICPUDRAFT_83013 [Dictyostelium purpureum]
gi|325077354|gb|EGC31072.1| hypothetical protein DICPUDRAFT_83013 [Dictyostelium purpureum]
Length = 382
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 208 FPRCYDI------DWNSRIIAVTESHVVLDKPAGTSVGGTTDN----IEESCATFASRAL 257
+PR Y + D + II + +++DKP G VG DN I + +
Sbjct: 89 YPRPYSMEHVRCEDPSKYIIFENQYFLIVDKPHGLDVGPIVDNYHGNITAIIGDYIEKRD 148
Query: 258 GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----TTAPLPV 312
L H+ID T G +V+ + ++ F++ I + +V K+Y A +
Sbjct: 149 NRKHKLYNPHRIDGPTRGLIVIIKDPDFLKKFNKMIIKNEVSKIYKAFLPKSSNQNIINP 208
Query: 313 GIMTHYMRPINIAPRLVSEGKTIFGLALMIREMVWKFEACIL 354
G+ HYM P N+ P+ +M+ E + K+ C+L
Sbjct: 209 GLYRHYMSPDNVLPK------------VMVNEKLEKYHECLL 238
>gi|303274711|ref|XP_003056671.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461023|gb|EEH58316.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 548
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 88/229 (38%), Gaps = 48/229 (20%)
Query: 126 FVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFR 185
++L+ GAVY + PE R + D S R ++G +R R
Sbjct: 125 LASELLDAGAVY---------VDWWPEGRRAGGDDDDESAARWRR-LRGDVIRR-----R 169
Query: 186 ITHVDQI---VEAGTYLRVHVHPKRF-PRCY--DIDWNSRIIAVTESHVVLDKPAGTSVG 239
+ V AG +RVH P+R+ C+ + W R++ E + ++KP
Sbjct: 170 LAVVPTPFPHARAGERVRVHRTPRRYRDACWLGEAGWRKRVVYEDEETLAVNKPHALPTQ 229
Query: 240 GTTDNIEESCATFASRALGLT-------TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRK 292
N E +RALG T L TH++D T G VVL +T F+
Sbjct: 230 AHESNAAECVPGCVARALGFTGGVTDGDDALLVTHRLDASTSGVVVLGKTLGAVRAFNAS 289
Query: 293 IR-EKKVKKLYLALTT-------------------APLPVGIMTHYMRP 321
I K+V K Y+AL P+P+G HYM P
Sbjct: 290 IAGGKRVTKTYVALVENASNVRRRGVTVEDATTPPPPVPLGRFVHYMYP 338
>gi|406916265|gb|EKD55290.1| hypothetical protein ACD_60C00017G0007 [uncultured bacterium]
Length = 318
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTE 274
++RI+ + ++++KP+G V GGT NI A R++ P L H++D+ T
Sbjct: 92 SNRILYEDKHLLIINKPSGVPVHGGTQVNI---GIIEALRSMYPELPHLELAHRLDSDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-------PLPVGIMTHYMRPINIAPR 327
GC+VLA+ + H +RE KV K+YLALT + V + HY++ +
Sbjct: 149 GCLVLAKKRSILRELHGLLREGKVHKVYLALTKGHWKTSELTVDVSLQKHYLQGGERMVK 208
Query: 328 LVSEGKT 334
+ EGK+
Sbjct: 209 VDREGKS 215
>gi|88810811|ref|ZP_01126068.1| ribosomal large subunit pseudouridine synthase C [Nitrococcus
mobilis Nb-231]
gi|88792441|gb|EAR23551.1| ribosomal large subunit pseudouridine synthase C [Nitrococcus
mobilis Nb-231]
Length = 314
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E ++LDKP+G +V G + +R G T PL H++D T GC+++
Sbjct: 87 ILYENEQLLILDKPSGLAVHGGSGLAYGVIEAIRARRPG-TLPLDLAHRLDRDTSGCLII 145
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A+ +E H +R +V+K YLAL L
Sbjct: 146 AKRRETLRQIHALMRSNRVEKRYLALLRGKL 176
>gi|289208370|ref|YP_003460436.1| pseudouridine synthase [Thioalkalivibrio sp. K90mix]
gi|288944001|gb|ADC71700.1| pseudouridine synthase, RluA family [Thioalkalivibrio sp. K90mix]
Length = 328
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTPLRTTHQIDNCTEG 275
I+ + +VLDKP+G +V G S F A R L + L H++D T G
Sbjct: 99 ILHEDDQVLVLDKPSGLAVHGG------SGLAFGIIEAMRQLRPGSELELGHRLDRETSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
C++LA+++ FH +RE +V+K YLAL P
Sbjct: 153 CLLLAKSRSGLQDFHAALREGRVEKRYLALQVGAFP 188
>gi|219682262|ref|YP_002468646.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|384226150|ref|YP_005617313.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|384226664|ref|YP_005618415.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
gi|384227208|ref|YP_005618958.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|414562706|ref|YP_005617897.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|219621995|gb|ACL30151.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|311086084|gb|ADP66166.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086657|gb|ADP66738.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087242|gb|ADP67322.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087761|gb|ADP67840.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 314
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ID T G ++LA+ + H ++REKK+KK Y+AL P
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWP 184
>gi|15616954|ref|NP_240167.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219681707|ref|YP_002468093.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|257471403|ref|ZP_05635402.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|11387076|sp|P57430.1|RLUC_BUCAI RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|25322330|pir||E84970 pseudouridylate synthase (EC 4.2.1.70) [imported] - Buchnera sp.
(strain APS)
gi|10039019|dbj|BAB13053.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219624550|gb|ACL30705.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
Length = 314
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
FP + + +RI+ ++++KP+G +V G + + + + L L H
Sbjct: 82 FPLNHSTNLLNRILYEDSHLLIINKPSGIAVHGGS-GLNFGVIEYFRKLRPLNKFLELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ID T G ++LA+ + H ++REKK+KK Y+AL P
Sbjct: 141 RIDRDTSGVLILAKKRTSLVSLHEQLREKKIKKEYIALVHGLWP 184
>gi|452994430|emb|CCQ93949.1| Uncharacterized RNA pseudouridine synthase YhcT [Clostridium
ultunense Esp]
Length = 311
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+++DKPAG SV T + + A + GL T +R H++D T G +++A+
Sbjct: 96 LIVDKPAGISVHPTEVGQKGTLANALAYHYFQEGLRTKVRHVHRLDRETSGLLLVAKHAL 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
SI ++RE++VK++YLA+ LP
Sbjct: 156 AHSILDEELRERRVKRIYLAIIAGTLP 182
>gi|255021322|ref|ZP_05293370.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340782174|ref|YP_004748781.1| ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
gi|254969185|gb|EET26699.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus ATCC 51756]
gi|340556327|gb|AEK58081.1| Ribosomal large subunit pseudouridine synthase C [Acidithiobacillus
caldus SM-1]
Length = 316
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT 266
R P +D R++ + +VLDKPAG +V G + I + L
Sbjct: 79 RLPEQLAVDLRERVLFEDDRVLVLDKPAGMAVHGGS-GIRYGVIEALRQLRPDLRELELV 137
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
H++D T GC++L++ + H+ +RE+ + K YLAL
Sbjct: 138 HRLDRDTSGCLLLSKRRSALRSLHQALREEAMDKRYLALVGG 179
>gi|221056917|ref|XP_002259596.1| ribosomal large subunit pseudouridylate synthase [Plasmodium
knowlesi strain H]
gi|193809668|emb|CAQ40369.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium knowlesi strain H]
Length = 504
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N II E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 65 NLSIIYENEFFLVVNKPYDIKLEKGKLDDVYPSVETLLRQKTNLDV-FRICGQLDYATSG 123
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-----NIAPRLVS 330
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI N +L
Sbjct: 124 LLIIAKDKLSCNILNYNIESKRISKIYLAILYGHLPLGVL-HVNTPISKIKNNFKMKLCY 182
Query: 331 EGKTIFGLALMIREMVWKFEACIL 354
+ +++ ++ C L
Sbjct: 183 NYNDYYDTGKYCYSLIYPYKQCYL 206
>gi|78485049|ref|YP_390974.1| pseudouridine synthase RluD [Thiomicrospira crunogena XCL-2]
gi|78363335|gb|ABB41300.1| ribosomal large subunit pseudouridine synthase C [Thiomicrospira
crunogena XCL-2]
Length = 312
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP+G +V G + I+ L L H+ID T GC++LA+
Sbjct: 96 LVINKPSGIAVHGGS-GIQWGLIEIVRALRPLAKRLELVHRIDRDTSGCILLAKKASVLK 154
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGI 314
H +IRE K+ K YLAL P G+
Sbjct: 155 ALHEQIRENKMTKEYLALVAHHWPKGL 181
>gi|307718151|ref|YP_003873683.1| ribosomal large subunit pseudouridine synthase C [Spirochaeta
thermophila DSM 6192]
gi|306531876|gb|ADN01410.1| ribosomal large subunit pseudouridine synthase C [Spirochaeta
thermophila DSM 6192]
Length = 300
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 200 RVHVH----PKRFPRCYDIDWNSRIIAV---TESHVVLDKPAGTSV---GGTTDNIEESC 249
R+H+H P+R PR W R + + T+ ++L+KP G V G TD +
Sbjct: 61 RIHIHRSLLPEREPRQ---KWEPRALPILLETDHLLILNKPPGAVVHGPGSLTDQVRSYL 117
Query: 250 ATFASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+L T +PL H++D T G +V +R+ F R +RE ++K YLAL
Sbjct: 118 KDRIPPSLAFTPSPL---HRLDRLTSGILVFSRSIHGARWFTRALREGGIEKTYLAL 171
>gi|350561198|ref|ZP_08930037.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781305|gb|EGZ35613.1| pseudouridine synthase, RluA family [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 319
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTPLRTTHQIDNCTEG 275
I+ + ++VLDKPAG +V G S F A R L L H++D T G
Sbjct: 93 ILFEDDDYLVLDKPAGLAVHGG------SGLAFGLIEAMRELRPGVALELGHRLDRETSG 146
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
C++L R++ + FH +R V+K YLAL
Sbjct: 147 CLILTRSRRALTAFHSALRSGGVEKRYLAL 176
>gi|344344883|ref|ZP_08775742.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
gi|343803577|gb|EGV21484.1| pseudouridine synthase, RluA family [Marichromatium purpuratum 984]
Length = 333
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P + ++ +V+DKP+G +V G + + ES R L
Sbjct: 92 PARAPEGWLARLEGAVLYEDNRLLVIDKPSGLAVHGGSGLSFGLIESL-----RQLHPGR 146
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
L H++D T GC+V+ + + HR +RE ++K YLAL LP MT
Sbjct: 147 ELELVHRLDRDTSGCLVVTKRRSALRELHRMMREDGIEKRYLALIGGELPRAEMT 201
>gi|254482018|ref|ZP_05095260.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
gi|214037708|gb|EEB78373.1| pseudouridine synthase, RluA family [marine gamma proteobacterium
HTCC2148]
Length = 318
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTT 261
P PR + R+I +V+DKP+G +V GG+ N ES S
Sbjct: 82 PPTIPRYWSEQLKQRVIYEDGGLLVVDKPSGLAVHGGSGLNFGMIESLRQIRSE----DR 137
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
L H++D T G +++AR HR++RE V K YLAL P
Sbjct: 138 YLELVHRLDRDTSGLIMVARKPAILRELHRQLREDHVDKRYLALVAGKWP 187
>gi|389584119|dbj|GAB66852.1| ribosomal large subunit pseudouridylate synthase [Plasmodium
cynomolgi strain B]
Length = 503
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N I+ E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 65 NLSIVYENEFFLVVNKPYDIKLEKGKLDDMYPSVETLLRQKTNLNV-FRICGQLDYATSG 123
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI-----NIAPRLVS 330
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI N +L
Sbjct: 124 LLIIAKDKLSCNILNYNIESKRLSKIYLAILYGHLPLGVL-HVNTPISKIKNNFKMKLCY 182
Query: 331 EGKTIFGLALMIREMVWKFEACIL 354
+ +++ ++ C L
Sbjct: 183 NYNDYYDNGKYCYSLIYPYKQCYL 206
>gi|39995777|ref|NP_951728.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
gi|409911220|ref|YP_006889685.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
gi|39982541|gb|AAR34001.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
PCA]
gi|298504786|gb|ADI83509.1| RNA pseudouridine synthase, RluA family [Geobacter sulfurreducens
KN400]
Length = 296
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
V+++KPAG V T + E + A + G LR +++D T G +LA++
Sbjct: 88 VIVNKPAGLPVHRTAEAGEANLVELAEHFMAGRGTAVKLRPVNRLDRGTSGATILAKSSS 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
+ R ++E+ + KLYLA+T LP
Sbjct: 148 SAGMLGRYVKEEGLDKLYLAVTDGSLP 174
>gi|21672612|ref|NP_660679.1| ribosomal large subunit pseudouridine synthase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
gi|25091178|sp|Q8K9J8.1|RLUC_BUCAP RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|21623244|gb|AAM67890.1| ribosomal large subunit pseudouridine synthase [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 314
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + I + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GINLGVIEYFRKIRPLEKFLELVHRIDRDTSGVLMLAKKRRSLL 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGI 314
H++IREKKV+K Y+AL P+ +
Sbjct: 161 SLHKQIREKKVQKKYIALVHGLWPLSL 187
>gi|428171903|gb|EKX40816.1| hypothetical protein GUITHDRAFT_142445 [Guillardia theta CCMP2712]
Length = 175
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+++ V P+RFP CY +WN R++ E ++++KP N E+ R
Sbjct: 93 MKIFVRPRRFPACYQ-EWNDRVLFEDEKFLIINKPHNLPCQAVDSNSHETVVECVGRK-- 149
Query: 259 LTTPLRTTHQIDNCTE 274
L L H++DNC E
Sbjct: 150 LNKRLHLAHRLDNCVE 165
>gi|308178003|ref|YP_003917409.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
gi|307745466|emb|CBT76438.1| pseudouridylate synthase [Arthrobacter arilaitensis Re117]
Length = 321
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPR-----CYDIDWNSRIIAVTES 226
+ GK V+E +R+ D+I T H P R PR + ++ E
Sbjct: 59 VNGKKVQEG---YRLAANDKI----TLPAFHAQPTREPRIEVPPALLKRLRNTVVHEDED 111
Query: 227 HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
+V+DKPAG V TDN F R L P L +H++D T G +VLA+T
Sbjct: 112 VLVIDKPAGIPVHKGTDNPAGVIEAF--RQLRPELPDLELSHRLDRDTSGLLVLAKTPSI 169
Query: 286 CSIFHRKI--REKKVKKLYLALTTA 308
H + RE ++++ YLAL
Sbjct: 170 LRYLHEMLRDREDEIERHYLALVAG 194
>gi|108759583|ref|YP_629678.1| RluA family pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108463463|gb|ABF88648.1| pseudouridine synthase, RluA family [Myxococcus xanthus DK 1622]
Length = 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 74/214 (34%), Gaps = 49/214 (22%)
Query: 100 RVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKE 159
RVE +V G V + EL LP L+ GAVY A
Sbjct: 7 RVEGALV--GKAVARAVADELGLPEPGARGLVEVGAVYVA-------------------- 44
Query: 160 VTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIV--EAGTYLRVHVHPKRFPRCYDIDWN 217
GK R+A V +V E G P P + +
Sbjct: 45 --------------GKRSRDANARLTAGQVVTVVLEEGGQSPLSEAPPA--PELRVLYED 88
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+ +IAV DKPAG S T + +S LG P H++D T G
Sbjct: 89 ADVIAV-------DKPAGVSAQPTEGRVGDSLVDLVGAKLG--RPAGLVHRLDRETSGVT 139
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
V +T E S + RE + +K Y+A T LP
Sbjct: 140 VFGKTAEATSALAAEFREGRARKRYVAATGPGLP 173
>gi|209963759|ref|YP_002296674.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957225|gb|ACI97861.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
Length = 336
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +VLDKPAG + G T+ ++ A + + H++D T GC
Sbjct: 98 RARVLFRDHDVIVLDKPAGLATQGGTNQVKHLDAMLDALKFEAEGRPKLVHRLDKDTSGC 157
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV 312
+VLAR+ + R ++ +K+Y A+T P P+
Sbjct: 158 LVLARSAAAAAKLTAAFRSREARKIYWAVTVGVPKPM 194
>gi|406878936|gb|EKD27704.1| hypothetical protein ACD_79C00616G0002 [uncultured bacterium]
Length = 232
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCVVLARTQEYC 286
V++KPAG +V + +++E + ++ LGL R H++D T G +++A+ +E
Sbjct: 14 VIEKPAGITVNRSENDLENTLEDWSQDKLGLKLLERAGIVHRLDKETSGLIIIAKDEESL 73
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
++ E++VKK Y AL L
Sbjct: 74 HKLQQQFAEREVKKKYSALVHGLL 97
>gi|337754571|ref|YP_004647082.1| ribosomal large subunit pseudouridine synthase C [Francisella sp.
TX077308]
gi|336446176|gb|AEI35482.1| Ribosomal large subunit pseudouridine synthase C [Francisella sp.
TX077308]
Length = 307
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 193 VEAGTYLRV-------HVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTT 242
V AG +R+ V + PR + RI+ T+ +++++KP+G +V G
Sbjct: 56 VSAGDIVRIPPFNLDEKVENIKVPRSHLDFLEQRILYETDDYIIVNKPSGMAVHGGSGVN 115
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
+ E +A L H++D T GCV+LA+ F +E+KVKK+Y
Sbjct: 116 SGLVERLRQLRPKA----RRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKERKVKKIY 171
Query: 303 LALT 306
AL
Sbjct: 172 YALV 175
>gi|254455970|ref|ZP_05069399.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082972|gb|EDZ60398.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
Length = 292
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II E+ +VL+K +G SV G T + + FA + T + H++D T G
Sbjct: 77 DQIIDNNENFIVLNKSSGISVQGGTKSKKNLVDIFAKSEIFQGTKPYSVHRLDKDTSGVF 136
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMTHYMRPINIAPRLVSEGKTI 335
++A+T++ + R +KV K YLA+ L G + + +++ + KTI
Sbjct: 137 IMAKTRQSAQLLTSLFRLRKVHKTYLAICHGELNKDSGEWNDDLIRYDGEKKIIEKAKTI 196
Query: 336 F 336
+
Sbjct: 197 Y 197
>gi|156095414|ref|XP_001613742.1| ribosomal large subunit pseudouridylate synthase [Plasmodium vivax
Sal-1]
gi|148802616|gb|EDL44015.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium vivax]
Length = 460
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N I+ E +V++KP + G D++ S T + L R Q+D T G
Sbjct: 22 NLSIVYENEFFLVVNKPYDIKLEKGKLDDMYPSVETLLRQKTNLDV-FRICGQLDYATSG 80
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+++A+ + C+I + I K++ K+YLA+ LP+G++ H PI
Sbjct: 81 LLIVAKDKLSCNILNYNIESKRISKIYLAMLYGHLPLGVL-HVNTPI 126
>gi|407802982|ref|ZP_11149821.1| RNA pseudouridine synthase [Alcanivorax sp. W11-5]
gi|407023142|gb|EKE34890.1| RNA pseudouridine synthase [Alcanivorax sp. W11-5]
Length = 239
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+IA VVLDKPAG SV + E+ A + PL H++D T G ++L
Sbjct: 6 LIAEQPDFVVLDKPAGVSV-----HSEDGAGVVAQLSALRDEPLWLVHRLDRDTSGALLL 60
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTT 307
AR +E + ++V K YL ++T
Sbjct: 61 ARNREAAAALGTLFAARQVTKFYLGIST 88
>gi|374622266|ref|ZP_09694792.1| RluA family pseudouridine synthase [Ectothiorhodospira sp. PHS-1]
gi|373941393|gb|EHQ51938.1| RluA family pseudouridine synthase [Ectothiorhodospira sp. PHS-1]
Length = 194
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDN 271
++W+ ++ + +V++KPAG V GG+ + A R +G P L H++D
Sbjct: 95 LEWS--VLLEDDDLLVINKPAGLPVHGGSGVAV---GVIEALRKMGRGKPFLELAHRLDR 149
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
T GC+VLAR + FH +R + K+YL L P G
Sbjct: 150 ETSGCLVLARNRPALLAFHELLRGGGIDKIYLTLLAGRWPGG 191
>gi|328867454|gb|EGG15836.1| hypothetical protein DFA_09505 [Dictyostelium fasciculatum]
Length = 418
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFA--SRALGLTTPLRTTHQIDNCTEGCV 277
II ES +V+DKP G +VG DN++ + + + + TP+ H+ID T G
Sbjct: 144 IIHDNESFMVVDKPHGINVGPLIDNLKNNLSWMVRQQQQQSIDTPIYNPHRIDFPTRGLC 203
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL-----------------TTAPLPVGIMTHYMR 320
+L + + F++ +++ +KK Y L VG HYM+
Sbjct: 204 LLVKKSDEIHRFNQLFKDRTIKKRYRVFIYENQNDKDKEIEKDGEEKEKLRVGRYIHYMK 263
Query: 321 P 321
P
Sbjct: 264 P 264
>gi|440298171|gb|ELP90812.1| ribosomal large subunit pseudouridine synthase C, putative
[Entamoeba invadens IP1]
Length = 362
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 200 RVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGL 259
R+H H P D + II T+ ++V++KPAG V T + S T G
Sbjct: 87 RIHAHEPPVP-----DHHIDIIEDTDEYLVINKPAGIPVHPTGRYMYNSIITILKEE-GK 140
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK------KVKKLYLALTTAPLPVG 313
L+ +++D T G +VLA+T+ F + +R+K +++K+YLA P
Sbjct: 141 YNDLKLVYRLDKNTSGVLVLAKTKRIAQKFQKALRDKTVGDFQEIEKIYLARVVGEFPET 200
Query: 314 IMTHYMRPINI 324
++ +PI++
Sbjct: 201 LVVD--KPIHL 209
>gi|334144241|ref|YP_004537397.1| pseudouridine synthase Rlu family protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333965152|gb|AEG31918.1| pseudouridine synthase, RluA family [Thioalkalimicrobium cyclicum
ALM1]
Length = 320
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + +V++KP+G +V G + + A L + H++D T G ++L
Sbjct: 94 ILFEDDDLIVINKPSGMAVHGGS-GVSWGLIELVRNARPLAKRVELVHRLDRDTSGAIIL 152
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
A+ H++IRE +V KLY L P +M
Sbjct: 153 AKKMSVLRDLHQQIREHQVTKLYWTLVKGRWPKALM 188
>gi|384227779|ref|YP_005619524.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ak (Acyrthosiphon kondoi)]
gi|345538719|gb|AEO08696.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ak (Acyrthosiphon kondoi)]
Length = 314
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP+G +V G + + + + L L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGS-GLSFGIIEYFRKLRPLDKFLELVHRIDRETSGVLILAKKRTSLI 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGI 314
H ++REKK+KK Y+AL P+ I
Sbjct: 161 SLHTQLREKKIKKEYIALVHGLWPIHI 187
>gi|387886246|ref|YP_006316545.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
gi|386871062|gb|AFJ43069.1| lysozyme [Francisella noatunensis subsp. orientalis str. Toba 04]
Length = 309
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSRVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GCV+LA+ F +E+KV K+Y AL
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYAL 174
>gi|124506351|ref|XP_001351773.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium falciparum 3D7]
gi|23504702|emb|CAD51580.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium falciparum 3D7]
Length = 487
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+II + +VL+KP + G D+I S T + L R Q+D T G +
Sbjct: 65 KIIYENDYFLVLNKPYDIKLEKGKLDDIYPSVETLLYQKRKLDV-FRICGQLDYATSGLL 123
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFG 337
++A+ + C+I + I K + K+YLA+ LP+ I+ H PI S+ K F
Sbjct: 124 IVAKDKLSCNILNYNIESKNISKIYLAILYGHLPLDIL-HINTPI-------SKNKEGFK 175
Query: 338 LAL 340
+ L
Sbjct: 176 MKL 178
>gi|431929968|ref|YP_007243014.1| RluA family pseudouridine synthase [Thioflavicoccus mobilis 8321]
gi|431828271|gb|AGA89384.1| pseudouridine synthase, RluA family [Thioflavicoccus mobilis 8321]
Length = 317
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
P + W I ++ V V+DKPAG +V G + + RA L H
Sbjct: 83 PPLREAAWIEGAILYEDAQVLVIDKPAGLAVHGGS-GLSHGLIELL-RAARPAQELELVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+++++ + HR +R+K V K YLAL LP
Sbjct: 141 RLDRDTSGCLLVSKRRSALRELHRLLRDKAVDKRYLALLVGRLP 184
>gi|406706327|ref|YP_006756680.1| RNA pseudouridylate synthase,S4 domain-containing protein [alpha
proteobacterium HIMB5]
gi|406652103|gb|AFS47503.1| RNA pseudouridylate synthase,S4 domain-containing protein [alpha
proteobacterium HIMB5]
Length = 303
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II E+ VV++K AG SV G T + + F+ + T + H++D T G ++
Sbjct: 92 IIDNNENFVVMNKSAGISVQGGTKSKKNLIDIFSKSEIFQDTKPFSVHRLDKETSGVFII 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTHYMRPINIAPRLVSEGKTIF 336
A+ +E + R +KV K YLA+ + G + + +++ E KT +
Sbjct: 152 AKNRETAQLLTSLFRMRKVHKTYLAICHGEIEKNSGQFNDMLIRYDNGKKIIEEAKTTY 210
>gi|381394076|ref|ZP_09919794.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330348|dbj|GAB54927.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 315
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II + +V++KP+G +V G + A RAL +P L H++D T GC+V
Sbjct: 93 IIYEDDRLLVINKPSGMAVHGGSG--LSYGLIEALRALRPNSPYLELVHRLDRDTSGCIV 150
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
LA+ + H ++R+KK+ K Y AL P
Sbjct: 151 LAKKRSALRHLHEQLRDKKMDKTYHALVAGHWP 183
>gi|167627177|ref|YP_001677677.1| lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
gi|167597178|gb|ABZ87176.1| Lysozyme [Francisella philomiragia subsp. philomiragia ATCC 25017]
Length = 309
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GCV+LA+ F +E+KV K+Y AL
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYAL 174
>gi|383767080|ref|YP_005446061.1| putative pseudouridine synthase [Phycisphaera mikurensis NBRC
102666]
gi|381387348|dbj|BAM04164.1| putative pseudouridine synthase [Phycisphaera mikurensis NBRC
102666]
Length = 265
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRA-----------LGLTTPLRT--THQIDNCTE 274
VLDKPAG V IEE+ + A +G PLR+ H+ID T
Sbjct: 58 AVLDKPAGQDV--HPLKIEEAGTLLQAAAGRYPELLRGGGVGREGPLRSGVVHRIDGVTS 115
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
GCVVLART + +V+K YLA
Sbjct: 116 GCVVLARTDDAWDALRDAFARHRVRKTYLA 145
>gi|121998031|ref|YP_001002818.1| RluA family pseudouridine synthase [Halorhodospira halophila SL1]
gi|121589436|gb|ABM62016.1| ribosomal large subunit pseudouridine synthase C [Halorhodospira
halophila SL1]
Length = 325
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRT 265
P + ++ E +VLDKP+G +V GG+T + A R L P +
Sbjct: 85 LPDGLEARLRRGVLYEDERLLVLDKPSGLAVHGGSTVRL---GLVEALRGLRPDLPFIEL 141
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
H++D T GC++LA+ + H ++R+ KV+K Y L PL
Sbjct: 142 VHRLDQETSGCLMLAKRRSTLRRLHEQLRQGKVEKHYTTLLVGPL 186
>gi|254466117|ref|ZP_05079528.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
gi|206687025|gb|EDZ47507.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
Length = 348
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 193 VEAGTYLRV------HVHPKRFPRCYDI-DWNSRIIAV-----TESHVVLDKPAGTSVGG 240
VEAG +RV + P PR I D ++++I + +VL+KPAG +V G
Sbjct: 56 VEAGQVVRVPPLADSDLKPAE-PRAMKISDADAKMIQSCVIYRDDDVIVLNKPAGLAVQG 114
Query: 241 TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
+ + + GL + H+ID T G +VLAR ++ R K +K
Sbjct: 115 GSGTTKHVDGLAEALKFGLEEKPKLVHRIDKDTSGVLVLARNRKAAQGLTAAFRHKNTRK 174
Query: 301 LYLALTTA-PLP 311
+Y AL P P
Sbjct: 175 IYWALVAGVPTP 186
>gi|254876283|ref|ZP_05248993.1| ribosomal large subunit pseudouridine synthase C [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842304|gb|EET20718.1| ribosomal large subunit pseudouridine synthase C [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 309
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ T+ ++V+DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYETDDYIVVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GCV+LA+ F +E+KV K+Y AL
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKERKVNKIYYAL 174
>gi|50955140|ref|YP_062428.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951622|gb|AAT89323.1| ribosomal large subunit pseudouridine synthase [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 306
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNS-RIIAVTESHVVLDKPAGT 236
REA K+ R+ AG++L V P+ PR I + I+ + VVLDKPAG
Sbjct: 46 REAGKSDRLP-------AGSWLDVTWQPREEPRIVPIVVSELTIVHEDDDIVVLDKPAGV 98
Query: 237 ----SVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCVVLARTQEYCSIFH 290
S+G + + A R P R H++D T G +V+A+++ ++
Sbjct: 99 AAHPSIGWEGPTVLGALAAAGFRISTSGAPERAGIVHRLDAGTSGLMVVAKSEHAYTVLK 158
Query: 291 RKIREKKVKKLYLAL 305
R ++ V+K+Y A+
Sbjct: 159 RAFHDRTVEKIYHAV 173
>gi|430761113|ref|YP_007216970.1| Ribosomal large subunit pseudouridine synthase C [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430010737|gb|AGA33489.1| Ribosomal large subunit pseudouridine synthase C [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 319
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + ++VLDKPAG +V G T A R L L H++D T GC+VL
Sbjct: 93 VVFEDDDYLVLDKPAGLAVHGGTGL--AFGLIEAMRELRPGVALELGHRLDRETSGCLVL 150
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
+++ + H +R V+K YLAL
Sbjct: 151 TKSRRALTALHSALRAGGVEKRYLAL 176
>gi|255319550|ref|ZP_05360764.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter
radioresistens SK82]
gi|262378429|ref|ZP_06071586.1| RNA pseudouridylate synthase [Acinetobacter radioresistens SH164]
gi|255303490|gb|EET82693.1| pseudouridylate synthase, 23S RNA-specific [Acinetobacter
radioresistens SK82]
gi|262299714|gb|EEY87626.1| RNA pseudouridylate synthase [Acinetobacter radioresistens SH164]
Length = 303
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
VD I E H++ RF P+ + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 VDSIYEGNQ----HIYYYRFLPKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGKTIFGLALM 341
AP + PIN+ RL +G+ + + ++
Sbjct: 181 APFKPDLNF----PINLKLRL-DKGEPFYTMQIV 209
>gi|340363266|ref|ZP_08685607.1| ribosomal large subunit pseudouridine synthase C [Neisseria macacae
ATCC 33926]
gi|339886207|gb|EGQ75875.1| ribosomal large subunit pseudouridine synthase C [Neisseria macacae
ATCC 33926]
Length = 332
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 187
>gi|404497687|ref|YP_006721793.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|418067343|ref|ZP_12704688.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195289|gb|ABB33056.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|373558948|gb|EHP85265.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 296
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
VV++KP G V T ++ E++ A R L G LR +++D T G +LA++
Sbjct: 88 VVVNKPPGLPVHRTAED-EQTLVDVAERFLAQRGTPAKLRPVNRLDRGTSGATILAKSAT 146
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
+F R ++E + KLYLA+ LP
Sbjct: 147 SAGMFGRFVKETGLGKLYLAVADGKLP 173
>gi|419797945|ref|ZP_14323395.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
gi|385696794|gb|EIG27262.1| pseudouridine synthase, RluA family [Neisseria sicca VK64]
Length = 332
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPDARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 187
>gi|372278301|ref|ZP_09514337.1| ribosomal large subunit pseudouridine synthase C [Oceanicola sp.
S124]
Length = 350
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 205 PKRFPRCYDIDWNSRIIAV--TESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
P+ PR D D AV + H++ L+KP G V G + + G
Sbjct: 75 PESGPRILDADVKMMQAAVLWKDDHIIALNKPPGLPVQGGSKQTRHVDGLSEALKFGYDE 134
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R H++D T G ++LART+E + R ++ +K+Y AL
Sbjct: 135 KPRLVHRLDKDTSGLLLLARTREAAAKLTAAFRSRETRKIYWALVAG 181
>gi|296446414|ref|ZP_06888358.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
gi|296256049|gb|EFH03132.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
Length = 229
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
SR++ +V+DKPAG V GG DN+E+ F + GL P H++D
Sbjct: 3 SRLLYRDGLMLVVDKPAGLPVHRGPRGG--DNLEDH---FDALRFGLPRPPALAHRLDRD 57
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GC+VL R ++ + R+ +++K Y A+
Sbjct: 58 TSGCLVLGRHRKALERLGKLFRDGRIEKTYWAVVEG 93
>gi|225025072|ref|ZP_03714264.1| hypothetical protein EIKCOROL_01961 [Eikenella corrodens ATCC
23834]
gi|224942164|gb|EEG23373.1| hypothetical protein EIKCOROL_01961 [Eikenella corrodens ATCC
23834]
Length = 323
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
PR +DI + E +V+DKP+G +V G + + RA L H+
Sbjct: 87 PREFDIVFED------EHLLVVDKPSGVAVHGGS-GVSFGVIEQLRRARPQARYLELVHR 139
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+D T G +V+A+ + H R K KK+YLAL P G+
Sbjct: 140 LDKDTSGLLVVAKKRSALVKLHEAWRNDKPKKVYLALGMGAWPQGV 185
>gi|311032387|ref|ZP_07710477.1| pseudouridine synthase, RluA family protein [Bacillus sp. m3-13]
Length = 307
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEG 275
+II TE +V++K AG ++D S + + G+++ +R H++D T G
Sbjct: 80 KIIYETEHLLVINKEAGMDTHPSSDQDFRSLSNGVAHYFNNNGISSKVRHIHRLDQDTSG 139
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAP 326
++ A+ +I R + E+KVK+ YLAL T P+G H+ ++P
Sbjct: 140 AILFAKHAISGAILDRMLEERKVKRTYLALVEGIVKTPEGTIDKPIGKDRHHASRRRVSP 199
>gi|288940468|ref|YP_003442708.1| RluA family pseudouridine synthase [Allochromatium vinosum DSM 180]
gi|288895840|gb|ADC61676.1| pseudouridine synthase, RluA family [Allochromatium vinosum DSM
180]
Length = 346
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P II E +V+DKP+G +V G + + ES R L
Sbjct: 107 PARAPEAQLARLEGAIIHEDERLLVIDKPSGLAVHGGSGLSYGLIESL-----RQLRPGR 161
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
L H++D T GC+V+ + + H IRE + K YLAL LP
Sbjct: 162 ELELVHRLDRDTSGCLVVCKRRSALRELHALIREGGLDKRYLALILGELP 211
>gi|410632029|ref|ZP_11342700.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
gi|410148565|dbj|GAC19567.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
Length = 317
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRT 265
Y+ DW +VL+KP+GT+V G S +F A RAL L
Sbjct: 96 LYEDDW----------LIVLNKPSGTAVHGG------SGLSFGVIEALRALRPQQKFLEL 139
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T GC+++A+ + H ++R++KV K Y AL P
Sbjct: 140 VHRLDRDTSGCLLIAKKRSALKNLHEQLRDRKVDKRYQALVAGEWP 185
>gi|90407030|ref|ZP_01215220.1| Predicted pseudouridylate synthase, Rlu family protein
[Psychromonas sp. CNPT3]
gi|90311901|gb|EAS39996.1| Predicted pseudouridylate synthase, Rlu family protein
[Psychromonas sp. CNPT3]
Length = 303
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCT 273
SRI+ ++ ++L+KP+G +V G + + A L P L H++D T
Sbjct: 83 SRIVYEDDALLILNKPSGIAVHGGS-----GLSFGAIEGLRALRPDARFLELVHRLDKAT 137
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC+++A+ + H ++R K + K YLAL
Sbjct: 138 SGCLLIAKKRSMLRALHEQLRNKTMNKQYLALVKG 172
>gi|256423396|ref|YP_003124049.1| pseudouridine synthase [Chitinophaga pinensis DSM 2588]
gi|256038304|gb|ACU61848.1| pseudouridine synthase [Chitinophaga pinensis DSM 2588]
Length = 570
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
II ES VV++KP+G SV G T I++S T ALG PL H++D T G +V
Sbjct: 370 IIYQDESVVVVNKPSGLRSVPGVT--IQDSVYTRLKHALGDIEPL-IVHRLDMDTSGLLV 426
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
+A+TQ R+ ++ V K Y AL
Sbjct: 427 VAKTQAAHKHIQRQFLQRTVSKRYTAL 453
>gi|57239048|ref|YP_180184.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|58578991|ref|YP_197203.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|57161127|emb|CAH58040.1| putative ribosomal large subunit pseudouridine synthase C
[Ehrlichia ruminantium str. Welgevonden]
gi|58417617|emb|CAI26821.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
Length = 305
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ++ +V++KP+G SV GG+ I S + R + ++ H++D T G
Sbjct: 90 DNIVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIR---IGESMKIVHRLDKSTSGI 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT 306
++LAR + + +++KVKK YLALT
Sbjct: 147 LMLARNARVSRLIMNEFKDRKVKKKYLALT 176
>gi|381157162|ref|ZP_09866396.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
gi|380881025|gb|EIC23115.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
Length = 338
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 225 ESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
E +++DKP+G +V GG+ ++ A RA+ L H++D T GC+++++
Sbjct: 119 EGLILIDKPSGLAVHGGSGLSL---GLIEALRAMRPQQSLELVHRLDRETSGCLLISKKP 175
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLP 311
H+++RE +V+K Y AL LP
Sbjct: 176 AILRWLHQQLREGQVRKRYQALLVGGLP 203
>gi|319650250|ref|ZP_08004396.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
gi|317398081|gb|EFV78773.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
Length = 265
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 193 VEAGTYLRVHVHPKR----FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT---DNI 245
++AG L+ H + P YDI+ ++ + +VL+KPAG + +N
Sbjct: 20 LQAGDKLKFHFFREEDLGLIPSYYDIE----VLFEDDHLLVLNKPAGMDTHPNSPEQNNT 75
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+ A F + G ++ H++D T G ++ A+ +I +K+ E+ +K+ YLAL
Sbjct: 76 LANAAAFHMQMQGEYRSIKHIHRLDRDTTGAILFAKHALAGAILDKKLEERTIKRTYLAL 135
>gi|58617049|ref|YP_196248.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
gi|58416661|emb|CAI27774.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
Length = 305
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ++ +V++KP+G SV GG+ I S + R + ++ H++D T G
Sbjct: 90 DNIVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIR---IGESMKIVHRLDKSTSGI 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT 306
++LAR + + +++KVKK YLALT
Sbjct: 147 LMLARNSRVSRLIMNEFKDRKVKKKYLALT 176
>gi|418292825|ref|ZP_12904755.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
ATCC 14405 = CCUG 16156]
gi|379064238|gb|EHY76981.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
ATCC 14405 = CCUG 16156]
Length = 294
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+R+H + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 64 MRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 123 -NTDLVPIHRIDRLTAGLVLFSANRESRGAYQALFREREISKRYEAICPA 171
>gi|365858930|ref|ZP_09398824.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
gi|363713362|gb|EHL96989.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
Length = 238
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P R P + +RI+ T++ +VLDKPAG V + A G +
Sbjct: 9 PPRLPAEPPAEIAARILLRTDTVLVLDKPAGLPVHAGPRGGASLESWLPLLAFGKKRIPQ 68
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
H++D T GC+VL RT+ + E + +K Y A+ P P
Sbjct: 69 PAHRLDTDTAGCLVLGRTKPALAELGALFAEGRAEKTYWAVLRGPGPA 116
>gi|339492826|ref|YP_004713119.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
ATCC 17588 = LMG 11199]
gi|338800198|gb|AEJ04030.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
ATCC 17588 = LMG 11199]
Length = 294
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+R+H + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 64 MRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 123 -NTDLVPIHRIDRLTAGLVLFSANRESRGAYQALFREREISKRYEAICPA 171
>gi|195434112|ref|XP_002065047.1| GK15252 [Drosophila willistoni]
gi|194161132|gb|EDW76033.1| GK15252 [Drosophila willistoni]
Length = 532
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RII + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 217 RIIHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKD-LRTIHRLDRLTSGLLL 275
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R ++IR+++V+K Y+ L P GI+
Sbjct: 276 FGRNANKARELEQQIRQRQVQKEYVCLVEGKFPDGII 312
>gi|423420666|ref|ZP_17397755.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|401101233|gb|EJQ09224.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
Length = 307
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGAGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|297172314|gb|ADI23291.1| pseudouridylate synthases, 23S RNA-specific [uncultured
actinobacterium HF0770_13M05]
Length = 244
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II E +VL+KP G +V G + I R H++D T GC+++
Sbjct: 34 IIYEDEELLVLNKPVGVAVHGGS-GIRHGIIEIL-RQTRSDVAFELVHRLDRDTSGCMLI 91
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
A+T+ H RE +VKK Y A+ P G+ T
Sbjct: 92 AKTRRMLLELHAAFREARVKKRYDAVVAGDWPQGLRT 128
>gi|409397182|ref|ZP_11248120.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas sp. Chol1]
gi|409118342|gb|EKM94742.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas sp. Chol1]
Length = 294
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
+DQ+ AG LR+H + P + + RI+ V E VV DKP SV + + E+
Sbjct: 56 LDQLYRAG--LRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNET 112
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+ LG L H+ID T G V+ + ++ + RE+++ K Y A+ A
Sbjct: 113 LLARLCKRLG-NADLVPIHRIDRLTAGLVLFSANRDSRGAYQALFREREIAKRYEAICPA 171
>gi|294668132|ref|ZP_06733239.1| ribosomal large subunit pseudouridine synthase [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309840|gb|EFE51083.1| ribosomal large subunit pseudouridine synthase [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 297
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAGT+V G + + RA L H++D T G +++
Sbjct: 62 IIYEDDALLVIDKPAGTAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 120
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR +K+YLAL LP
Sbjct: 121 AKKRNALVKLHEAIRNDHPQKIYLALGVGKLP 152
>gi|415884374|ref|ZP_11546302.1| pseudouridine synthase, RluA family protein [Bacillus methanolicus
MGA3]
gi|387590043|gb|EIJ82362.1| pseudouridine synthase, RluA family protein [Bacillus methanolicus
MGA3]
Length = 306
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR 264
P +D+ +++ E ++ +KPAG G T+ + + A F +A G ++
Sbjct: 81 PAYFDV----QVLYEDEHLIIFNKPAGMDTHPNEAGQTNTLANAAA-FYLQAKGEAVKIK 135
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA---------PLPVGIM 315
H++D T G V+ A+ SI R + E+ +K+ YLA+T LP+G
Sbjct: 136 HIHRLDRDTTGAVLFAKHSLAGSILDRMLEERLIKRTYLAITEGFFQKQSGIINLPIGRD 195
Query: 316 THY 318
H+
Sbjct: 196 RHH 198
>gi|406936443|gb|EKD70162.1| hypothetical protein ACD_46C00616G0003 [uncultured bacterium]
Length = 322
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
RI+ E ++++KP+G SV G T + A R + P L H++D+ T G
Sbjct: 98 DRILYEDEYLLIINKPSGMSVHAGNTVRV---GVVEALRHMFPKLPHLELAHRLDSETSG 154
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
C+VLA+ + H +RE KV K+Y ALT
Sbjct: 155 CLVLAKRKRILRELHTLLREGKVNKIYWALTKG 187
>gi|229016637|ref|ZP_04173574.1| Pseudouridine synthase [Bacillus cereus AH1273]
gi|229022852|ref|ZP_04179372.1| Pseudouridine synthase [Bacillus cereus AH1272]
gi|228738387|gb|EEL88863.1| Pseudouridine synthase [Bacillus cereus AH1272]
gi|228744627|gb|EEL94692.1| Pseudouridine synthase [Bacillus cereus AH1273]
Length = 307
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPQYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|304312939|ref|YP_003812537.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
gi|301798672|emb|CBL46904.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
Length = 311
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ E +VL+KPAG +V GG+ ++ A A R L + L H++D T GC++
Sbjct: 88 ILYEDEGLIVLNKPAGMAVHGGSGVSVGVIEALRAIRPL--SRHLELVHRLDRDTSGCLM 145
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + H +++ +++K+Y AL
Sbjct: 146 VAKKRSRLRVLHEQLQAGEIRKVYWALVEG 175
>gi|410446729|ref|ZP_11300832.1| pseudouridine synthase, RluA family [SAR86 cluster bacterium
SAR86E]
gi|409980401|gb|EKO37152.1| pseudouridine synthase, RluA family [SAR86 cluster bacterium
SAR86E]
Length = 313
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 207 RFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN----IEESCATFASRALGLTTP 262
+ P I++ S II + ++++K G SV T+N ++ + A F S + L
Sbjct: 78 KIPSSRLIEFESSIIDQNDDFILVNKEPGLSVHSGTNNQFGLVDIARAKFPSLEIDLC-- 135
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
H+ID T GCV+L++ + + FH+++ V K Y A+ +G+M + I
Sbjct: 136 ----HRIDKSTSGCVLLSKNKLFLRHFHKQLINNNVTKKYEAIL-----IGVMK---KNI 183
Query: 323 NIAPRLVSEGKTIF 336
+ +L S K F
Sbjct: 184 KVESKLDSSTKEHF 197
>gi|149247844|ref|XP_001528310.1| hypothetical protein LELG_00830 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448264|gb|EDK42652.1| hypothetical protein LELG_00830 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 430
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G V T + S + + T H++D T G V+L + ++
Sbjct: 117 IVIDKPSGIPVHPTGSYMFNSLSEIVKEMFNFDN-IWTCHRLDKVTSGVVILCKNRDAAV 175
Query: 288 IFHRKIREK--KVKKLYLALTTAPLPVGI-----------MTHYMRPINIAPRLVSEGKT 334
F + EK KVKK+YLA P G+ M Y++P N+ L++ T
Sbjct: 176 KFLNILLEKSDKVKKIYLARVNGKFPDGVYRYTCPILAVNMNGYIQPSNLES-LLTLTST 234
Query: 335 IF 336
IF
Sbjct: 235 IF 236
>gi|423392314|ref|ZP_17369540.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
gi|401634961|gb|EJS52723.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
Length = 307
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + D++++ G L+VH+ Y +D + + + HV +
Sbjct: 45 KGITVNGEQRRW-----DELLKEGDKLQVHMF---MEEEYGVDPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|350564123|ref|ZP_08932942.1| pseudouridine synthase Rlu family protein, TIGR01621
[Thioalkalimicrobium aerophilum AL3]
gi|349778123|gb|EGZ32482.1| pseudouridine synthase Rlu family protein, TIGR01621
[Thioalkalimicrobium aerophilum AL3]
Length = 223
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + VVLDKP G S + A R L T L H++D T G V++
Sbjct: 5 VVFESNEFVVLDKPDGLSFHSEQ---QPGLVVLAERQLNQT--LYPVHRLDKMTSGLVIM 59
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTT 307
A+T + F + ++ ++K YLA++T
Sbjct: 60 AKTDQVARQFQQMFEQRLIEKYYLAIST 87
>gi|83312904|ref|YP_423168.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947745|dbj|BAE52609.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 229
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SR++ + +VLDKPAG +V ++ + + A G + H++D T GC+
Sbjct: 8 SRVLYKDQDVIVLDKPAGLAVHAGPNSPDHLELYLGALAFGWAEMPKLAHRLDRDTSGCL 67
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALT 306
+L R + + ++V+K+Y +++
Sbjct: 68 ILGRHAKAIKRLGKMFEHRRVEKVYWSVS 96
>gi|410617784|ref|ZP_11328749.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
gi|410162915|dbj|GAC32887.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
Length = 318
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKALHEQLRDKKMDKRYQALVVGEWP 186
>gi|308801855|ref|XP_003078241.1| putative RNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116056692|emb|CAL52981.1| putative RNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 215
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 254 SRALGL-TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
RA+GL L+ H++D TEG +VLA T + F + ++ V KLY LT+ +
Sbjct: 3 ERAMGLREGTLKPVHRLDVGTEGVLVLATTSAFAKEFGDMLAKRSVTKLYRVLTSRAVET 62
Query: 313 GIMTHYMRPINIAPR 327
GI H P PR
Sbjct: 63 GIHIHDAEPATEGPR 77
>gi|146281243|ref|YP_001171396.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
A1501]
gi|145569448|gb|ABP78554.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
A1501]
Length = 294
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 64 MRVHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 123 -NADLVPIHRIDRLTAGLVLFSANRESRDAYQALFRERRIAKRYEAICPA 171
>gi|347739549|ref|ZP_08870795.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
gi|346917122|gb|EGX99601.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
Length = 337
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G T + A + H++D T GC+VLART +
Sbjct: 111 IVLNKPAGLAVQGGTGQNKHLDAMLDVLTFDGKERPKLVHRLDKDTSGCLVLARTSFAAT 170
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
R K+ +K Y A+T VG+ Y I+ A
Sbjct: 171 RLGGYFRGKEARKYYWAVT-----VGVPKQYQGKIDAA 203
>gi|421464165|ref|ZP_15912858.1| RNA pseudouridine synthase [Acinetobacter radioresistens WC-A-157]
gi|400206539|gb|EJO37516.1| RNA pseudouridine synthase [Acinetobacter radioresistens WC-A-157]
Length = 303
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+D I E H++ RF P+ + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 IDSIYEGNQ----HIYYYRFLPKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGKTIFGLALM 341
AP + PIN+ RL +G+ + + ++
Sbjct: 181 APFKPELNF----PINLTLRL-DKGEPFYTMQVV 209
>gi|113931514|ref|NP_001039205.1| RNA pseudouridylate synthase domain-containing protein 4 [Xenopus
(Silurana) tropicalis]
gi|123892314|sp|Q28C59.1|RUSD4_XENTR RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|89268931|emb|CAJ83700.1| RNA pseudouridylate synthase domain containing 4 [Xenopus
(Silurana) tropicalis]
Length = 324
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATF----ASRALGLTT-PLR 264
Y + S+++ V+++KP G V GG T +E S A+ A G PL+
Sbjct: 42 VYLRELKSQVVREDPELVLVNKPHGLPVHGGPT--VERSVASLLPALAKHHFGWKAEPLK 99
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G ++LART E + +RE++V ++Y AL
Sbjct: 100 LCHRLDRDTTGALILARTTEAAERVQQALREREVHRVYWAL 140
>gi|410611272|ref|ZP_11322371.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
gi|410169123|dbj|GAC36260.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
Length = 317
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F A RAL L H++D T GC+++A+
Sbjct: 103 IVLNKPSGTAVHGG------SGLSFGVIEALRALRPQQKFLELVHRLDRDTSGCLLIAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ H ++R++KV K Y AL P
Sbjct: 157 RSALKSLHEQLRDRKVDKRYQALVAGEWP 185
>gi|56695430|ref|YP_165778.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
gi|56677167|gb|AAV93833.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
Length = 347
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G + + G R H++D T G +VLART+E +
Sbjct: 101 IVLNKPAGLAVQGGSGQTRHVDGLSEALRFGNDENPRLVHRLDKDTSGVLVLARTREAAA 160
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
R + +K+Y AL G+ T Y+ I
Sbjct: 161 RLTAAFRHRNTRKIYWALV-----AGVPTPYLGEIKTG 193
>gi|50545681|ref|XP_500379.1| YALI0B01276p [Yarrowia lipolytica]
gi|49646245|emb|CAG82596.1| YALI0B01276p [Yarrowia lipolytica CLIB122]
Length = 337
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RI+ ++ VV+DKP G V T + S GL L H++D T G +V
Sbjct: 110 RIVFENDALVVVDKPGGIPVHPTGKYLFNSVKEILKHETGLEE-LYPAHRLDKNTTGVLV 168
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG-IMTHY 318
A+T E + ++I + KK YLA P G + TH+
Sbjct: 169 FAKTSESVNHVTQQIMSRSAKKEYLARVKGRFPPGRVETHH 209
>gi|374603453|ref|ZP_09676432.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374390924|gb|EHQ62267.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 295
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
R+ DQI AG LR+H+ P+ D + I+ ++ +V KPAG +V T
Sbjct: 44 RMLAQDQIRTAGDRLRMHLFPEEAMTTEPADEPAEILYEDDAVLVAYKPAGMAVHAATAE 103
Query: 245 IEESCATFASRAL------GLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
E+ A+ A G + +R H++D T G V++A+ ++ +R K +
Sbjct: 104 QEQRRASLAHAVACHYAWTGQSLRVRHIHRLDTDTTGPVLIAKHALPHAVLDADMRSKAI 163
Query: 299 KKLYLAL 305
++ Y A+
Sbjct: 164 RRSYAAI 170
>gi|384921230|ref|ZP_10021218.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
gi|384464864|gb|EIE49421.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
Length = 352
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 205 PKRFPR--CYDIDWNSRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
P+ PR D++ + + HV+ ++KPAG G + + + G+
Sbjct: 80 PRTPPRVNAEDVELIQSCVLWKDDHVIAINKPAGLPTQGGSGQLRHVDGMADALRFGMDE 139
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
R H++D T G ++LART+E +R K+ +K+Y A+ G+ T Y+
Sbjct: 140 KPRLVHRLDKDTSGVLLLARTREAAQALTAALRHKQTRKIYWAVV-----AGVPTPYLGE 194
Query: 322 I 322
I
Sbjct: 195 I 195
>gi|410628423|ref|ZP_11339143.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
gi|410152029|dbj|GAC25912.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
Length = 318
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKNLHEQLRDKKMDKRYQALVVGEWP 186
>gi|336316273|ref|ZP_08571173.1| 23S RNA-specific pseudouridylate synthase [Rheinheimera sp. A13L]
gi|335879395|gb|EGM77294.1| 23S RNA-specific pseudouridylate synthase [Rheinheimera sp. A13L]
Length = 235
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKP+G+S E A GL L H++D T G ++LA++ E +
Sbjct: 13 LVLDKPSGSSF---HSEFEPGVVALAEAQFGLK--LYAVHRLDKGTSGLLLLAKSSEAAA 67
Query: 288 IFHRKIREKKVKKLYLALT 306
+ ++++K YLALT
Sbjct: 68 LLSELFLNQQIQKFYLALT 86
>gi|386019428|ref|YP_005937452.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
DSM 4166]
gi|327479400|gb|AEA82710.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
DSM 4166]
Length = 274
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 44 MRVHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 102
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 103 -NADLVPIHRIDRLTAGLVLFSANRESRDAYQALFRERRIAKRYEAICPA 151
>gi|407792848|ref|ZP_11139884.1| pseudouridylate synthase [Idiomarina xiamenensis 10-D-4]
gi|407217106|gb|EKE86942.1| pseudouridylate synthase [Idiomarina xiamenensis 10-D-4]
Length = 315
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 33/144 (22%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQI 269
+A ESH+ VL+KP+G +V G + + E +A + H++
Sbjct: 87 VAALESHILYEDDVLLVLNKPSGLAVHGGSGLQFGLIEGLRALRPQA----KQMELVHRL 142
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHY 318
D T GC+++A+ + H+++REK ++K YLAL TAPL +
Sbjct: 143 DRETSGCILVAKRRSALRHLHQQLREKSMQKRYLALVRGQWQAHDKVVTAPLQKNTLKSG 202
Query: 319 MRPINIAPRLVSEGK---TIFGLA 339
R + R+ +EGK T F +A
Sbjct: 203 ERVV----RVDAEGKPSETRFNIA 222
>gi|109898450|ref|YP_661705.1| RluA family pseudouridine synthase [Pseudoalteromonas atlantica
T6c]
gi|109700731|gb|ABG40651.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
atlantica T6c]
Length = 318
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKNLHEQLRDKKMDKRYQALVVGEWP 186
>gi|407788345|ref|ZP_11135477.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
gi|407197626|gb|EKE67680.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
Length = 348
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG G + + GL R H++D T G ++LART +
Sbjct: 102 IVLNKPAGLPTQGGSKQTRHVDGLAEALKFGLEEKPRLVHRLDKDTSGVLILARTPAMAT 161
Query: 288 IFHRKIREKKVKKLYLALTTA-PLP 311
R K +K+Y AL P+P
Sbjct: 162 KLTEAFRHKNTRKIYWALVAGVPVP 186
>gi|403216128|emb|CCK70626.1| hypothetical protein KNAG_0E03690 [Kazachstania naganishii CBS
8797]
Length = 354
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E ++V+DKP G V T T + PL H++D T G ++ ART +
Sbjct: 97 EQYLVVDKPCGIPVHPTGQYFHH---TLVEQLRATQGPLWPCHRLDRVTSGLMIFARTPQ 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
S R I+ K+YLA P G+
Sbjct: 154 AASKLQRAIQRHDAVKVYLARVQGKFPGGV 183
>gi|261364850|ref|ZP_05977733.1| ribosomal large subunit pseudouridine synthase [Neisseria mucosa
ATCC 25996]
gi|288566895|gb|EFC88455.1| ribosomal large subunit pseudouridine synthase [Neisseria mucosa
ATCC 25996]
Length = 332
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAG +V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGVAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 187
>gi|397691901|ref|YP_006529782.1| tRNA pseudouridine synthase [Candidatus Mycoplasma haemolamae str.
Purdue]
gi|397328631|gb|AFO51637.1| tRNA pseudouridine synthase [Candidatus Mycoplasma haemolamae str.
Purdue]
Length = 231
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR-----TTHQIDNCT 273
+++ TE ++V+DK +G V +DN E T +GL R H++D T
Sbjct: 7 QVVYETEHYLVVDKESGVLVH--SDNYTEDKDTL----IGLLKERRGEELYLVHRLDKDT 60
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+++ + F E+K++K YLA+ + PLP
Sbjct: 61 SGLLIVAKSKLALATFQAIFLEQKIEKKYLAILSNPLP 98
>gi|339246467|ref|XP_003374867.1| pseudouridylate synthase 6 [Trichinella spiralis]
gi|316971885|gb|EFV55608.1| pseudouridylate synthase 6 [Trichinella spiralis]
Length = 404
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 14/150 (9%)
Query: 162 DPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRII 221
+ ++L+ R ++ G+ T VD +VE G +R H P +D I+
Sbjct: 88 EEAILAGRVTVNGQP----------TSVDYVVENGDLIRHMCHRHELPV---LDSAVDIV 134
Query: 222 AVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
TE +V++KP V S + G+ L+T H++D T G V+ +
Sbjct: 135 TDTEDILVVNKPCSIPVHPCGRYHFNSLVLYLKHIGGMDN-LKTFHRLDRLTSGLVIFLK 193
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++ +++ E ++KK YL L P
Sbjct: 194 NEKIEKKLRQQMIENQIKKEYLCLVDGEFP 223
>gi|27904809|ref|NP_777935.1| ribosomal large subunit pseudouridine synthase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|34395769|sp|Q89AH2.1|RLUC_BUCBP RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|27904207|gb|AAO27040.1| ribosomal large subunit pseudouridine synthase D [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 315
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFA--SRALGLTTPLRTTHQ 268
I +N+ I+ ++L+KP+G SV G + E+ +R L L H+
Sbjct: 89 IIFNNMILYEDNYFLILNKPSGMSVHSGSGINYGMIENLRILRPYNRYLDLV------HR 142
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+D T G +++A+ + H ++REKK+KK Y+AL P
Sbjct: 143 LDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALVHGVWP 185
>gi|257464999|ref|ZP_05629370.1| RNA pseudouridine synthase [Actinobacillus minor 202]
gi|257450659|gb|EEV24702.1| RNA pseudouridine synthase [Actinobacillus minor 202]
Length = 212
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP G SV DN ++ LG+ + H++D T G ++LA T+E
Sbjct: 15 IVIDKPEGISV--HKDNEATGLTERIAQQLGVPQ-VWLVHRLDKATSGLLILALTKEAAV 71
Query: 288 IFHRKIREKKVKKLYLALTTA 308
F+ ++ K++K Y AL+TA
Sbjct: 72 EFYHLFKQHKIQKTYWALSTA 92
>gi|254361221|ref|ZP_04977365.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452745187|ref|ZP_21945024.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
gi|153092712|gb|EDN73761.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|452086797|gb|EME03183.1| 23S rRNA pseudouridylate synthase C [Mannheimia haemolytica
serotype 6 str. H23]
Length = 320
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ S+I+ ES +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELESQILYEDESMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|158317482|ref|YP_001509990.1| pseudouridine synthase [Frankia sp. EAN1pec]
gi|158112887|gb|ABW15084.1| pseudouridine synthase [Frankia sp. EAN1pec]
Length = 285
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
SR I E+ + LDKP G SV G E S A L H+ID T G
Sbjct: 9 ESRKIFEDEAVLALDKPVGVSVMG-----ERHDTDLVSMARDAGEELFPAHRIDKVTSGV 63
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT 306
V+ A+ + R+ + V+K YLALT
Sbjct: 64 VLFAKELRFHGDLTRQFNRRTVEKTYLALT 93
>gi|196004434|ref|XP_002112084.1| hypothetical protein TRIADDRAFT_1807 [Trichoplax adhaerens]
gi|190585983|gb|EDV26051.1| hypothetical protein TRIADDRAFT_1807, partial [Trichoplax
adhaerens]
Length = 418
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II + + VV++KPA V S +R GL L T H++D T G ++
Sbjct: 101 QIIKMDDDIVVINKPASIPVHPCGRYRHNSVVFMLARDYGLQN-LHTIHRLDRLTSGILI 159
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPL---------PVGIMTHYMRPINIAPRLV 329
ART + +++R+++++K Y+ P+ +++H + ++P+
Sbjct: 160 FARTLQKAQELEKQVRDRQIEKQYVCRVDGEFPTETIDCKEPIDVVSHKLGVCRVSPKGK 219
Query: 330 SEGKTIF 336
S +TIF
Sbjct: 220 S-CQTIF 225
>gi|91974996|ref|YP_567655.1| pseudouridine synthase [Rhodopseudomonas palustris BisB5]
gi|91681452|gb|ABE37754.1| pseudouridine synthase [Rhodopseudomonas palustris BisB5]
Length = 298
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 204 HPKRF--PRCYDIDWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRA 256
HP +F P D +R++ +V+DKPAG V GG N+E S F
Sbjct: 5 HPDQFDVPELSPEDIQARVLHRDGLMLVIDKPAGLPVHRGPKGGP--NLETS---FEFLR 59
Query: 257 LGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GL P H++D T GC+VL R ++ + + K+ K Y A+
Sbjct: 60 FGLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSKISKTYWAIVEG 111
>gi|375309918|ref|ZP_09775196.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
gi|375077871|gb|EHS56101.1| pseudouridine synthase [Paenibacillus sp. Aloe-11]
Length = 309
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 185 RITHVDQIVEAGTYLRVHVHP----KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H I G LR+ + P PR YD+ +++ + +V+ KPAG +V
Sbjct: 55 RLRHEKGIEHTGDRLRLALFPVMDLGVIPRWYDL----KVLYEDDFCLVVHKPAGMAVHP 110
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
GG D ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 111 DGGVKDGPLTLDHAVASYYE-IHGIHAAVRHVHRLDGDTTGPVLYAKNEFALLKLDEQMR 169
Query: 295 EKKVKKLYLALTTAPLPVGIMT 316
K + + Y+AL +P + T
Sbjct: 170 AKAIDRRYVALVRGEVPSSLRT 191
>gi|332290332|ref|YP_004421184.1| tRNA pseudouridine synthase C [Gallibacterium anatis UMN179]
gi|330433228|gb|AEC18287.1| tRNA pseudouridine synthase C [Gallibacterium anatis UMN179]
Length = 232
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A TE+ VV++KP G SV D+ E+ T + LG+ + H++D T G ++
Sbjct: 12 QIVAQTENFVVINKPCGVSV--HKDDNEQGLTTQLAEQLGVEQ-VWLVHRLDKSTSGLLL 68
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
A ++ + + +V+K+YLAL T
Sbjct: 69 CALNRQAAAELSAQFAAHQVQKIYLALATG 98
>gi|299473311|emb|CBN77710.1| pseudouridylate synthases, 23S RNA-specific [Ectocarpus
siliculosus]
Length = 256
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRT-THQIDNCTEGCV 277
I+ V E VV +KP+ V G + ++S AT A+ LG R H++D T GCV
Sbjct: 52 ILFVDEEIVVCNKPSDLLCVPGRIE--KDSLATRAALELGHYRVDRMIVHRLDMATSGCV 109
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
++ART +R+ RE++V+K Y+A+ L
Sbjct: 110 IMARTDAALKDLNRQFRERQVRKRYVAIVHGVL 142
>gi|375111640|ref|ZP_09757844.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
gi|374568276|gb|EHR39455.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
Length = 242
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A T+ VL+K AG S + E+ A L L H++D T G ++
Sbjct: 10 QIVAQTDDFYVLNKAAGVSF-----HSEQGPGLVALAEQQLAQKLYPVHRLDKVTSGLLL 64
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
LAR E + R +++V+K YLAL+ A
Sbjct: 65 LARRPEVAAELTRLFAKRQVQKCYLALSAA 94
>gi|349610413|ref|ZP_08889763.1| hypothetical protein HMPREF1028_01738 [Neisseria sp. GT4A_CT1]
gi|348610012|gb|EGY59720.1| hypothetical protein HMPREF1028_01738 [Neisseria sp. GT4A_CT1]
Length = 332
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II ++ +V+DKPAG +V G + + RA L H++D T G +++
Sbjct: 97 IIYEDDALLVIDKPAGIAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 155
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 156 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 187
>gi|332306496|ref|YP_004434347.1| RluA family pseudouridine synthase [Glaciecola sp. 4H-3-7+YE-5]
gi|332173825|gb|AEE23079.1| pseudouridine synthase, RluA family [Glaciecola sp. 4H-3-7+YE-5]
Length = 318
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKNLHEQLRDKKMDKRYHALVVGEWP 186
>gi|410641164|ref|ZP_11351687.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
gi|410139291|dbj|GAC09874.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
Length = 318
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKNLHEQLRDKKMDKRYHALVVGEWP 186
>gi|325187007|emb|CCA21551.1| RNA pseudouridylate synthaselike protein putative [Albugo laibachii
Nc14]
Length = 639
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I T +VL+K + G N + + R R HQ+D T G + +
Sbjct: 69 VIRKTSGLIVLNKGFDQRLDG---NFDATIEKALHRDYPDIAKFRWIHQLDFATSGVLCV 125
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
T+E S+ R RE+KV+K YLA+ + LP + + NIA
Sbjct: 126 GTTKEATSLGCRLFRERKVEKEYLAIVSGHLPFSPLEYQAAETNIA 171
>gi|33519868|ref|NP_878700.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Blochmannia floridanus]
gi|33504213|emb|CAD83475.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Blochmannia floridanus]
Length = 322
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG-LTTPLRTTHQIDNCTEGCVV 278
+I E +VL+KP+G SV G DN + A R L L H++D T G ++
Sbjct: 94 VIYEDEHLLVLNKPSGISVHGGGDNKLQLNIIDALRMLRPKIRFLWLVHRLDRDTSGLLL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA---------LTTAPLPVGIMTHYMRPINIA 325
+A+++ H ++R +K++K YLA +T+ P+ Y++ IN+
Sbjct: 154 IAKSRIVLIKLHEQLRLQKIQKTYLAIVYGSWDTHITSISAPLFKKKDYIKNINVV 209
>gi|410646393|ref|ZP_11356844.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
gi|410133999|dbj|GAC05243.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
Length = 318
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTH 267
+A ESH+ VL+KP+G +V G S +F AL P L H
Sbjct: 89 VASLESHILFEDDLLIVLNKPSGMAVHGG------SGLSFGVIEALRALRPQARFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+V+A+ + H ++R+KK+ K Y AL P
Sbjct: 143 RLDRDTSGCLVIAKKRSALKNLHEQLRDKKMDKRYHALVVGEWP 186
>gi|387825306|ref|YP_005824777.1| Ribosomal large subunit pseudouridine synthase [Francisella cf.
novicida 3523]
gi|332184772|gb|AEE27026.1| Ribosomal large subunit pseudouridine synthase [Francisella cf.
novicida 3523]
Length = 307
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
RI+ + ++++DKP+G +V G + I + L H++D T GC
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGS-GINSGLVERLRQLRPKARRLDLVHRLDKETSGC 145
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
V+LA+ F +++KV K+Y A+ I+T
Sbjct: 146 VILAKKHSSLVYFFDIFKQRKVDKIYYAIVHGHWDKKIIT 185
>gi|269958889|ref|YP_003328678.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
centrale str. Israel]
gi|269848720|gb|ACZ49364.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
centrale str. Israel]
Length = 299
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVV-LDKPAGTSV-GGTTD 243
I H D+IV +R R +D S I + +V+ ++KPAG SV GG+
Sbjct: 62 IKHADRIVMREKEIR------RLQHVPLLDLISNNILYEDQNVIAINKPAGVSVQGGSKV 115
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
+ R G R H++D T G +VLAR + R+ RE++V+K Y+
Sbjct: 116 GVSIGDLLDKIRPGGCC---RIVHRLDKDTSGVLVLARDLDVARCLAREFRERRVQKEYI 172
Query: 304 ALTTA 308
A+T
Sbjct: 173 AITKG 177
>gi|222056620|ref|YP_002538982.1| RluA family pseudouridine synthase [Geobacter daltonii FRC-32]
gi|221565909|gb|ACM21881.1| pseudouridine synthase, RluA family [Geobacter daltonii FRC-32]
Length = 296
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRTTHQIDNCTEGCVVLARTQ 283
VV +KP G + + + + SR L G LR +++D T G V+LA++
Sbjct: 88 VVFNKPPGLPMHRAAEVDDVNLVDVGSRLLNRRDGGNGKLRPVNRLDRGTSGAVILAKSS 147
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPL 310
+F R+++E + KLYLA+ L
Sbjct: 148 TAAGMFGRQLKEDGLDKLYLAIVDGRL 174
>gi|88607689|ref|YP_505141.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
phagocytophilum HZ]
gi|88598752|gb|ABD44222.1| ribosomal large subunit pseudouridine synthase C [Anaplasma
phagocytophilum HZ]
Length = 297
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 183 TFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTT 242
T I +VD+I + VH R + II E+ + ++KPAG +V G T
Sbjct: 46 TVSIRNVDKIASRSKEAK-EVHDDALLRLV----SDNIIYKDENIIAINKPAGVNVQGGT 100
Query: 243 DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLY 302
+ S + ++ + L H++D T G +++AR Q I ++R ++V+K Y
Sbjct: 101 -KVSISLSDLLNKIIP-GEQLHIVHRLDRDTSGVLIIARGQSIARILSEELRFRRVRKEY 158
Query: 303 LALTTA 308
+A+T
Sbjct: 159 IAVTKG 164
>gi|244539183|dbj|BAH83226.1| 23S rRNA pseudouridylate synthase [Candidatus Ishikawaella
capsulata Mpkobe]
Length = 317
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFAS----RALGLTTPL 263
P +I + I ++H+ +L+KP+G +V G S +F R L + L
Sbjct: 83 PNRKEISILEKAILFEDNHILILNKPSGIAVHGG------SGLSFGVIEGLRLLRPNSHL 136
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G ++LA+ + H ++R K+V+K YLAL P
Sbjct: 137 ELVHRLDRDTSGLLLLAQKRSALRSLHEQLRTKEVRKEYLALVQGKWP 184
>gi|372271855|ref|ZP_09507903.1| ribosomal large subunit pseudouridine synthase C [Marinobacterium
stanieri S30]
Length = 324
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ ++S VV++KP+G +V G + + AL P L H++D T G
Sbjct: 98 IVYESDSLVVINKPSGLAVHGGS-----GVSLGMIEALRQIRPKSRFLELVHRLDRDTSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
C+++A+ + H +R++KV K+Y AL
Sbjct: 153 CIMVAKKRSMLRYLHDALRQRKVNKIYHALVVG 185
>gi|108757756|ref|YP_630767.1| RluA family pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108461636|gb|ABF86821.1| pseudouridine synthase, RluA family [Myxococcus xanthus DK 1622]
Length = 316
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG-- 235
R A+K +T AG ++ V V + D D+ ++ +S V +DKPAG
Sbjct: 49 RPAKKGLTLT-------AGQHIAVEVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRP 101
Query: 236 -----TSVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ GT N E + A+ +R GL H++D T G VV ART++
Sbjct: 102 SHPLQSGETGTVANALVARYPECALASLDAREGGLC------HRLDVETSGVVVAARTRD 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+ + V K YLAL T PL
Sbjct: 156 AWNAVREAFGSRAVDKRYLALVTGPL 181
>gi|392422552|ref|YP_006459156.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
CCUG 29243]
gi|390984740|gb|AFM34733.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
CCUG 29243]
Length = 274
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+R+H + P + + RI+ V E VV DKP SV + + E+ S+ LG
Sbjct: 44 MRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLSKRLG 102
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 103 -NADLVPIHRIDRLTAGLVLFSANRESRGAYQALFREREISKRYEAICPA 151
>gi|384228339|ref|YP_005620074.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
gi|345539272|gb|AEO08139.1| ribosomal large subunit pseudouridine synthase C [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
Length = 314
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++++KP+G +V GG+ N + + L T L H+ID T G ++LA+ +
Sbjct: 102 LIINKPSGIAVHGGSGCNF--GVIEYFRKLRPLNTFLELVHRIDRETSGILMLAKKRISL 159
Query: 287 SIFHRKIREKKVKKLYLALTTAPLP 311
H+++RE K+KK Y AL P
Sbjct: 160 VSLHKQLRENKIKKEYTALVHGLWP 184
>gi|381168928|ref|ZP_09878109.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380681944|emb|CCG42929.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 231
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 218 SRIIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+R++ + +VLDKPAG +V GTTD++E G + R H++D T
Sbjct: 8 ARVLYRDQDVIVLDKPAGLAVHAGPGTTDHLELYLDPLR---FGWSQNPRLAHRLDRDTS 64
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
GC++L R + R +++K+Y ++ P
Sbjct: 65 GCLILGRHDKALKRLGRMFETHRIEKVYWSVCIGAPP 101
>gi|423460729|ref|ZP_17437526.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|401140782|gb|EJQ48338.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
Length = 307
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|392382035|ref|YP_005031232.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
gi|356877000|emb|CCC97801.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
Length = 339
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ L+KPAG +V G T+ + A + + H++D T G ++LAR S
Sbjct: 112 IALNKPAGLAVQGGTNTTKHLDAMLDALRFDAKERPKLVHRLDKDTSGVLLLARNTFAAS 171
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
+ R + V+K+Y A T VG+ Y I++A L EG
Sbjct: 172 KLTEQFRGRDVRKIYWAAT-----VGVPKPYQGKIDLA--LAKEG 209
>gi|322420987|ref|YP_004200210.1| RluA family pseudouridine synthase [Geobacter sp. M18]
gi|320127374|gb|ADW14934.1| pseudouridine synthase, RluA family [Geobacter sp. M18]
Length = 303
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
V L+KPAG +V T D E + A L LR +++D T G ++LA++
Sbjct: 88 VCLNKPAGLAVHRTEDPDEITLVDLAEALLKKRDGAGKLRPVNRLDKGTSGAIILAKSAV 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+F + ++E+ + KLYLA+ L
Sbjct: 148 AAGMFGKMVQEEGLGKLYLAMVEGKL 173
>gi|229172031|ref|ZP_04299596.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|423404095|ref|ZP_17381268.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|228611374|gb|EEK68631.1| Pseudouridine synthase [Bacillus cereus MM3]
gi|401647302|gb|EJS64911.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
Length = 307
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|344923106|ref|ZP_08776567.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 323
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S II E ++++KP+G +V G T A R TH+ID T G
Sbjct: 94 KSLIIWEDEDLLIINKPSGLAVQGGTKTFRHVDRYLAGLGELNNCRYRLTHRIDRDTSGL 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+V+A+ + + ++ ++ KV+K+Y A+T
Sbjct: 154 LVIAKKSDMATHLTQQFKDGKVEKIYWAVT 183
>gi|331698896|ref|YP_004335135.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
gi|326953585|gb|AEA27282.1| pseudouridine synthase [Pseudonocardia dioxanivorans CB1190]
Length = 252
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ES +V+DKP G SV G + + T A+ A LR ++ID T G V+L
Sbjct: 12 VLWEDESCLVVDKPPGLSVMGERHDTD--LVTIAADA---GEDLRWVNRIDKVTSGAVLL 66
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A+++E R+ +++ V K YLA+
Sbjct: 67 AKSKEAHGALTRQFQQRTVAKSYLAI 92
>gi|423475275|ref|ZP_17451990.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
gi|402436377|gb|EJV68408.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
Length = 307
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGITVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|383453341|ref|YP_005367330.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
gi|380734165|gb|AFE10167.1| RluA family pseudouridine synthase [Corallococcus coralloides DSM
2259]
Length = 312
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKPAG + T + S S LG L H++D T G V +T S
Sbjct: 92 IAVDKPAGLNAQPTEGRVGGSLVDLVSEHLGRQAGL--VHRLDRETSGVTVFGKTPAATS 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVG 313
RE +K YLA T LP G
Sbjct: 150 ALAEAFREGTARKRYLAATGPGLPAG 175
>gi|379706961|ref|YP_005262166.1| putative RNA pseudouridylate synthase [Nocardia cyriacigeorgica
GUH-2]
gi|374844460|emb|CCF61522.1| putative RNA pseudouridylate synthase [Nocardia cyriacigeorgica
GUH-2]
Length = 256
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 213 DIDWNSRI----IAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
DIDW IA ++ V ++KPAG SV G ++ A+ A+G T L H+
Sbjct: 2 DIDWPDLRERCRIAEDDAIVAVNKPAGISVTGER---HDTDIVQAAAAVGET--LYPVHR 56
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
ID T G V+LA+ R+ ++ +K YLA+ T P
Sbjct: 57 IDKVTSGVVLLAKELAAHGQLTRQFNKQTARKTYLAIVTTP 97
>gi|111220539|ref|YP_711333.1| hypothetical protein FRAAL1074 [Frankia alni ACN14a]
gi|111148071|emb|CAJ59739.1| hypothetical protein FRAAL1074 [Frankia alni ACN14a]
Length = 303
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 215 DWNS--RIIAVTESHVVL--DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
DW R+ A+ E VL DKP G SV G E A L H+ID
Sbjct: 8 DWADIRRLHAIYEDEAVLALDKPVGISVMG-----ERHDTDLVRLAADAGEELFPVHRID 62
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T G V+ AR Y R+ + + V K YLALT
Sbjct: 63 KVTSGIVLFARELRYHGDLTRQFQRRTVGKCYLALT 98
>gi|386346156|ref|YP_006044405.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
gi|339411123|gb|AEJ60688.1| pseudouridine synthase [Spirochaeta thermophila DSM 6578]
Length = 300
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 200 RVHVH----PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATF 252
R+H+ P+R P+ + I+ T+ ++L+KP G V G TD +
Sbjct: 61 RIHIDRSLLPERKPQQKGKASSLPILLETDHLLILNKPPGAVVHGPGSLTDQVRSYLKDR 120
Query: 253 ASRALGLT-TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+L T +PL H++D T G +V +R+ F + +RE +++K YLAL
Sbjct: 121 IPPSLAFTPSPL---HRLDRLTSGILVFSRSIHGARWFTQALREGRIEKTYLAL 171
>gi|72127019|ref|XP_792641.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Strongylocentrotus purpuratus]
gi|390368006|ref|XP_003731372.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Strongylocentrotus purpuratus]
Length = 414
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGG------TTDNIEESCA-TFASRALGLTTPLRTTHQID 270
R+I + LDKP G V G + D++ A T ++ G T L H++D
Sbjct: 147 DRVIFDKGDIIALDKPYGLPVHGGPGMKHSIDSLLPQLAWTLNNKGGGNTEELHLIHRLD 206
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G ++LAR + + H R++++ K YL +T
Sbjct: 207 KETTGVMLLARNERTARVLHEMFRKRQIIKRYLVITVG 244
>gi|348671761|gb|EGZ11581.1| pseudouridine synthase [Phytophthora sojae]
Length = 413
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD-NIEESCATFASRALGLTTPLRTTH 267
PR D R+++ E VVL+K + G D +E++ A R R H
Sbjct: 87 PRTLD-QLQLRVLSKDEHFVVLNKGPDERMDGEFDVTLEKALA----RDFPDVPKFRWIH 141
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
Q+D T G +V+ T+E + R REK+V+K YLA+ LP
Sbjct: 142 QLDFATSGVLVVGATKEATATGCRLFREKQVQKEYLAVVRGHLP 185
>gi|347529629|ref|YP_004836377.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345138311|dbj|BAK67920.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 244
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R++ + ++LDKPAG V D AS G H++D T GC+
Sbjct: 19 DRVLFIDGEAIILDKPAGLPVDPPRDGSLSLHNHLASLTFGFERWPVAVHRLDRDTSGCL 78
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+LAR + F + V+K YLA+
Sbjct: 79 LLARNPKAAKRFTEAFEARAVEKSYLAVVDG 109
>gi|196040729|ref|ZP_03108028.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|228932672|ref|ZP_04095546.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229090345|ref|ZP_04221588.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|196028519|gb|EDX67127.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|228692928|gb|EEL46646.1| Pseudouridine synthase [Bacillus cereus Rock3-42]
gi|228826990|gb|EEM72750.1| Pseudouridine synthase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 307
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|228926422|ref|ZP_04089494.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229120931|ref|ZP_04250173.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|228662591|gb|EEL18189.1| Pseudouridine synthase [Bacillus cereus 95/8201]
gi|228833246|gb|EEM78811.1| Pseudouridine synthase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 307
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|392959181|ref|ZP_10324665.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421052955|ref|ZP_15515939.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421061189|ref|ZP_15523551.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421067881|ref|ZP_15529297.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421070091|ref|ZP_15531227.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392442702|gb|EIW20279.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446776|gb|EIW24053.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|392448702|gb|EIW25883.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392450881|gb|EIW27887.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392456564|gb|EIW33306.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
Length = 300
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPA V T + + A + + L G+ T +R H++D T GCV+ A+
Sbjct: 90 LVLNKPAYQLVHPTGQTTKGTLANYLAYHLQQQGIITTIRPVHRLDRETSGCVIFAKDDR 149
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
I ++++++ +K++Y AL
Sbjct: 150 SQFILEQQLKDRTLKRVYWAL 170
>gi|49184224|ref|YP_027476.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|65318659|ref|ZP_00391618.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|165870408|ref|ZP_02215063.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167634370|ref|ZP_02392691.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167639342|ref|ZP_02397614.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170686762|ref|ZP_02877982.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|170706270|ref|ZP_02896731.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|177651449|ref|ZP_02934238.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190568721|ref|ZP_03021625.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|218902499|ref|YP_002450333.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|227815867|ref|YP_002815876.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|228913961|ref|ZP_04077585.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229604571|ref|YP_002865810.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|254682548|ref|ZP_05146409.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254726210|ref|ZP_05187992.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. A1055]
gi|254733966|ref|ZP_05191680.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254740346|ref|ZP_05198037.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254753734|ref|ZP_05205769.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|254758830|ref|ZP_05210857.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Australia 94]
gi|270000596|ref|YP_003329034.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612209|ref|YP_003541023.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|421507075|ref|ZP_15953996.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|421637892|ref|ZP_16078489.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
gi|49178151|gb|AAT53527.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|164713903|gb|EDR19425.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167512781|gb|EDR88155.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167530258|gb|EDR92984.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170128804|gb|EDS97670.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|170669285|gb|EDT20028.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172082727|gb|EDT67790.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190560137|gb|EDV14118.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|218535216|gb|ACK87614.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|224552848|gb|ACN55061.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|227003057|gb|ACP12800.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|228845683|gb|EEM90710.1| Pseudouridine synthase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229268979|gb|ACQ50616.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850296|gb|ACZ49998.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
gi|401822727|gb|EJT21876.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. UR-1]
gi|403395451|gb|EJY92690.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. BF1]
Length = 307
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|359299985|ref|ZP_09185824.1| RNA pseudouridine synthase [Haemophilus [parainfluenzae] CCUG
13788]
gi|402305329|ref|ZP_10824388.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
sputorum HK 2154]
gi|400376442|gb|EJP29329.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
sputorum HK 2154]
Length = 219
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
VV++KPAG SV D + ++ LG+ L H++D T G ++ AR Q
Sbjct: 15 VVINKPAGISV--HKDEQAVGLSEKLAKQLGVEK-LWLVHRLDKVTSGLLIFARNQTAAV 71
Query: 288 IFHRKIREKKVKKLYLALT 306
F+ E KV+K YLAL+
Sbjct: 72 NFYHLFHEHKVEKTYLALS 90
>gi|296533864|ref|ZP_06896396.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296265811|gb|EFH11904.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 236
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 219 RIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ TE+ +V+DKPAG V GG + +E+ A P H++D T
Sbjct: 22 KILLQTEAVLVIDKPAGLPVHRGPRGGAS--LEDHLPALAQGKRHWPQP---AHRLDTDT 76
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
GC+VL RT+ + R E + +K Y A+
Sbjct: 77 AGCLVLGRTKPALAALGRLFAEGRARKTYWAV 108
>gi|83593991|ref|YP_427743.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|386350743|ref|YP_006048991.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
gi|83576905|gb|ABC23456.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|346719179|gb|AEO49194.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
Length = 330
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 219 RIIAVTESH-VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R I ++H +V++K AG +V G T S A G TP R H++D T G +
Sbjct: 94 RAILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESLADGGETP-RLVHRLDKDTSGVL 152
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
VLARTQ R ++ K+Y A+ P+
Sbjct: 153 VLARTQAAARALTSAFRSREALKVYWAIVVGRPPM 187
>gi|404494901|ref|YP_006719007.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|418067555|ref|ZP_12704894.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78192530|gb|ABB30297.1| RNA pseudouridine synthase, RluA family [Geobacter metallireducens
GS-15]
gi|373558553|gb|EHP84889.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 295
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 24/184 (13%)
Query: 171 SIKGKTVREAQKTFRITHVDQIVEAGTYLRVHV-HPKRFPR-CYDIDWNSRIIAVTESHV 228
++ G VR A +T R AG + + V P+R+ Y D ++ + ++
Sbjct: 42 AVAGAMVRVASRTLR---------AGEEIVLGVMEPERYQELAYTRD---DLLFENDDYL 89
Query: 229 VLDKPAGTSVGGTTDNIE---ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
++K AG + T ++ E T R LG P R H++D T G ++ +T+
Sbjct: 90 AVNKAAGLNCQRTPYQLKGTVEHAVTLYLRTLGSQEPARVIHRLDRGTSGVMIFPKTKRA 149
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIFGLALMIREM 345
+ +++E +V+K+Y AL TA P PI G +G+A RE
Sbjct: 150 AAHISAQLKEGRVEKVYWALVTAE-PASDQWEVNAPI------AKVGSARYGVATPGREA 202
Query: 346 VWKF 349
+ +F
Sbjct: 203 LTRF 206
>gi|301052930|ref|YP_003791141.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|300375099|gb|ADK04003.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
Length = 307
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|390950506|ref|YP_006414265.1| RluA family pseudouridine synthase [Thiocystis violascens DSM 198]
gi|390427075|gb|AFL74140.1| pseudouridine synthase, RluA family [Thiocystis violascens DSM 198]
Length = 348
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
P R P + ++ + +V+DKP G +V G + + ES R L
Sbjct: 107 PGRAPETQLARLDRSVLYEDDRLLVIDKPPGLAVHGGSGLSYGLIESL-----RQLRPGH 161
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
L H++D T GC+V+++ + H IRE K+ K YLAL L
Sbjct: 162 ELELVHRLDRETSGCLVISKRRSALRELHALIREGKMDKRYLALIVGEL 210
>gi|406936200|gb|EKD69986.1| hypothetical protein ACD_46C00683G0002 [uncultured bacterium]
Length = 318
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
+RI+ ++L+KP+G V GG+ I A R + P L H++D+ T G
Sbjct: 93 TRILYEDNYLLILNKPSGVPVHGGSQVKI---GIIEALRCMYPNLPHLELAHRLDSDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-------PLPVGIMTHYMRPINIAPRL 328
C++LA+ + H +R K++K+Y+ALT + V + Y++ ++
Sbjct: 150 CLILAKKRSILKELHELLRLGKMRKIYMALTQGHWKPSELRVEVALQKSYLQGGERIVKV 209
Query: 329 VSEGKT 334
S+GKT
Sbjct: 210 DSQGKT 215
>gi|118476866|ref|YP_894017.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196046511|ref|ZP_03113736.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225863254|ref|YP_002748632.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|229183584|ref|ZP_04310807.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|376265233|ref|YP_005117945.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
gi|118416091|gb|ABK84510.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|196022695|gb|EDX61377.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|225789436|gb|ACO29653.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228599827|gb|EEK57424.1| Pseudouridine synthase [Bacillus cereus BGSC 6E1]
gi|364511033|gb|AEW54432.1| putative ribosomal large subunit pseudouridine synthase [Bacillus
cereus F837/76]
Length = 307
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|365969978|ref|YP_004951539.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
cloacae EcWSU1]
gi|365748891|gb|AEW73118.1| Ribosomal large subunit pseudouridine synthase C [Enterobacter
cloacae EcWSU1]
Length = 315
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
PR + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PRLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|304389009|ref|ZP_07371056.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ATCC 13091]
gi|385342762|ref|YP_005896633.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240149]
gi|385856345|ref|YP_005902857.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NZ-05/33]
gi|416167879|ref|ZP_11607759.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis OX99.30304]
gi|416181350|ref|ZP_11611596.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M13399]
gi|416186231|ref|ZP_11613592.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M0579]
gi|304337143|gb|EFM03330.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ATCC 13091]
gi|325131027|gb|EGC53753.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis OX99.30304]
gi|325135123|gb|EGC57750.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M13399]
gi|325137030|gb|EGC59626.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M0579]
gi|325202968|gb|ADY98422.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240149]
gi|325207234|gb|ADZ02686.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NZ-05/33]
Length = 330
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|387927550|ref|ZP_10130229.1| ribosomal large subunit pseudouridine synthase D [Bacillus
methanolicus PB1]
gi|387589694|gb|EIJ82014.1| ribosomal large subunit pseudouridine synthase D [Bacillus
methanolicus PB1]
Length = 307
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPL 263
P +D+ ++I E +V +KPAG G T+ + + A F +A G +
Sbjct: 81 MPTYFDV----QVIYEDEHLIVFNKPAGMDTHPNETGQTNTLANAAA-FYLQAKGEAVKI 135
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
R H++D T G V+ A+ SI R + + +K+ YLA+ L
Sbjct: 136 RHIHRLDRDTTGAVLFAKHALAGSILDRMLEHRLIKRTYLAMAEGIL 182
>gi|386735092|ref|YP_006208273.1| Ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. H9401]
gi|384384944|gb|AFH82605.1| Ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. H9401]
Length = 215
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKVK 181
>gi|345303474|ref|YP_004825376.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
gi|345112707|gb|AEN73539.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
Length = 254
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 228 VVLDKPAGTSVGGTTDN-----------IEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+V++KP+G G I+E + LGL H++D G
Sbjct: 29 LVINKPSGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLV------HRLDTPVSGV 82
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP-VGIMTHYMRPINIAPRLVSE 331
+VLART + + ++ RE+ V+K+YLAL L GI +M P RLV E
Sbjct: 83 MVLARTSKAAARLGQQFRERTVEKVYLALVEGELAGSGIWEDFMAPARDHMRLVPE 138
>gi|325288659|ref|YP_004264840.1| pseudouridine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324964060|gb|ADY54839.1| pseudouridine synthase, RluA family [Syntrophobotulus glycolicus
DSM 8271]
Length = 295
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 210 RCYDIDWNSRIIAV---TESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPL 263
R Y ++ + I + ES +VL+KPAG V G TT + R LG+ +
Sbjct: 69 RSYGVNPEAGAIDILYEDESLIVLNKPAGLLVHPAGMTTSGTLANYLADYFRQLGVICTI 128
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R H++D T GC+V A+ S + K+K+ YLAL
Sbjct: 129 RPLHRLDRDTSGCLVFAKGPVVQSKMEDLLAAGKIKRTYLALAEG 173
>gi|293375853|ref|ZP_06622121.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325844995|ref|ZP_08168320.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
gi|292645532|gb|EFF63574.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325488968|gb|EGC91358.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
Length = 299
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
++ Q +I ++I+E G L + V N I+ E ++L+KPAG
Sbjct: 44 KKVQLNAQIADFNKILEVGDILLIPVFESEGIDFKPQKMNLDIVYEDEHLLILNKPAGVM 103
Query: 238 VG-GTTDNIEE--SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V D + + + G +R H+ID T G ++ A+ S+ ++
Sbjct: 104 VHPDQKDGLNTLVNGVAYYYEQKGFNERIRYIHRIDTDTSGGIIFAKHFMAHSLMDYQLS 163
Query: 295 EKKVKKLYLALTTAPL 310
EK++++ YLAL + L
Sbjct: 164 EKQIRRWYLALVSGNL 179
>gi|15676125|ref|NP_273256.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis MC58]
gi|385339240|ref|YP_005893112.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis G2136]
gi|385852405|ref|YP_005898919.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis H44/76]
gi|416199950|ref|ZP_11619535.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 961-5945]
gi|421537238|ref|ZP_15983426.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|421553948|ref|ZP_15999899.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|427826919|ref|ZP_18993964.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
H44/76]
gi|433464190|ref|ZP_20421684.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|433466311|ref|ZP_20423774.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|433487395|ref|ZP_20444574.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|433489569|ref|ZP_20446708.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|433504207|ref|ZP_20461152.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|433506250|ref|ZP_20463169.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|433508384|ref|ZP_20465270.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
gi|433510467|ref|ZP_20467310.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
gi|7225419|gb|AAF40655.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis MC58]
gi|316985120|gb|EFV64072.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
H44/76]
gi|325143210|gb|EGC65550.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 961-5945]
gi|325197484|gb|ADY92940.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis G2136]
gi|325199409|gb|ADY94864.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis H44/76]
gi|402319715|gb|EJU55220.1| pseudouridine synthase [Neisseria meningitidis 93003]
gi|402333984|gb|EJU69279.1| pseudouridine synthase [Neisseria meningitidis 98008]
gi|432205099|gb|ELK61130.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
87255]
gi|432206000|gb|ELK62015.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM422]
gi|432226160|gb|ELK81893.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M13255]
gi|432230565|gb|ELK86240.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM418]
gi|432243590|gb|ELK99101.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9506]
gi|432244266|gb|ELK99761.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
9757]
gi|432250035|gb|ELL05433.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
12888]
gi|432250535|gb|ELL05928.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
4119]
Length = 330
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|389604823|emb|CCA43749.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha522]
Length = 330
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|366052468|ref|ZP_09450190.1| pseudouridylate synthase [Lactobacillus suebicus KCTC 3549]
Length = 302
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL-RTTHQIDNCTEGCVVLARTQEYC 286
+V++KPAG + FA+ L + + H+ID T G V++A+
Sbjct: 97 MVVNKPAGIKTHPNWQGETGTLMNFAAAYLSQSNQVPYMVHRIDQQTSGAVIIAKNPVVV 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPLP 311
I R I K++K+ YLA+T LP
Sbjct: 157 PILDRLISSKQIKRQYLAITDGTLP 181
>gi|161870862|ref|YP_001600036.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 053442]
gi|416194779|ref|ZP_11617496.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis CU385]
gi|416211596|ref|ZP_11621465.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240013]
gi|418287403|ref|ZP_12900010.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM233]
gi|421539393|ref|ZP_15985555.1| pseudouridine synthase [Neisseria meningitidis 93004]
gi|421556191|ref|ZP_16002108.1| pseudouridine synthase [Neisseria meningitidis 80179]
gi|421558184|ref|ZP_16004068.1| pseudouridine synthase [Neisseria meningitidis 92045]
gi|421564339|ref|ZP_16010138.1| pseudouridine synthase [Neisseria meningitidis NM3081]
gi|421566670|ref|ZP_16012413.1| pseudouridine synthase [Neisseria meningitidis NM3001]
gi|433512557|ref|ZP_20469359.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63049]
gi|161596415|gb|ABX74075.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis 053442]
gi|325141211|gb|EGC63711.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis CU385]
gi|325145393|gb|EGC67670.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240013]
gi|372203795|gb|EHP17398.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM233]
gi|402321973|gb|EJU57444.1| pseudouridine synthase [Neisseria meningitidis 93004]
gi|402338044|gb|EJU73283.1| pseudouridine synthase [Neisseria meningitidis 80179]
gi|402338578|gb|EJU73809.1| pseudouridine synthase [Neisseria meningitidis 92045]
gi|402345094|gb|EJU80221.1| pseudouridine synthase [Neisseria meningitidis NM3001]
gi|402345936|gb|EJU81040.1| pseudouridine synthase [Neisseria meningitidis NM3081]
gi|432250312|gb|ELL05707.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63049]
Length = 330
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|423552873|ref|ZP_17529200.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|401185486|gb|EJQ92580.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
Length = 307
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|163803777|ref|ZP_02197632.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. AND4]
gi|159172418|gb|EDP57289.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. AND4]
Length = 314
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II E +VL+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIFEDEHMLVLNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRYLQAQFREKTVKKFYFALVMG 183
>gi|85710030|ref|ZP_01041095.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85688740|gb|EAQ28744.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 234
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTT--DNIEESCATFASRALGLTTPLRTTHQI 269
N II +V+DKPAG V GG D+IE+ LG P H++
Sbjct: 2 NIPIIYEDGEALVIDKPAGLPVDRPKRGGPALFDHIEQL-------KLGFQRPPVPVHRL 54
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T GC++LAR + F++ ++ V K YLA+
Sbjct: 55 DTDTSGCLLLARNPKALKRFNKAFEDRLVGKTYLAV 90
>gi|127511033|ref|YP_001092230.1| pseudouridine synthase Rlu family protein [Shewanella loihica PV-4]
gi|126636328|gb|ABO21971.1| pseudouridine synthase Rlu family protein, TIGR01621 [Shewanella
loihica PV-4]
Length = 224
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+IIA +V+DK G + + S A L L + H++D T G ++
Sbjct: 3 KIIADETDFLVIDKAPGVHF----HSQDGSAGVMAQLESDLDIKLYSVHRLDTMTSGLLL 58
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
A++ E + F ++ E KV+K YLAL
Sbjct: 59 FAKSSEAAAAFTQRFSEHKVQKYYLALAKG 88
>gi|444318599|ref|XP_004179957.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
gi|387512998|emb|CCH60438.1| hypothetical protein TBLA_0C06450 [Tetrapisispora blattae CBS 6284]
Length = 378
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 207 RFPRCYDIDWN---SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
++P C D+ N I+ + + +V+DKP+G V T + LG L
Sbjct: 101 QWPSCGDLVENILGVPIVFKSSNLLVIDKPSGLPVHPTGQYFYNTLTKVLE--LGDFPSL 158
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
R ++D T G +VLAR E +KI+E V KLY A
Sbjct: 159 RPAFRLDKPTSGLLVLARDTETAGTIQKKIKEHSVTKLYFA 199
>gi|224014790|ref|XP_002297057.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968437|gb|EED86785.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 686
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 46/206 (22%)
Query: 119 ELNLPPLFVADLIHFGAVYYALVCPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVR 178
E + P L A+L+ G+V+Y P T+ ++ DPS K + +
Sbjct: 171 ENDNPNLIPAELLALGSVWY---LPYSSCTSIADRF-------DPSNGIKPTRLN----- 215
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWN--------------SRIIAVT 224
+ ++IV+AG Y RVH P+RF DW I+A
Sbjct: 216 -------VGDWNRIVQAGDYFRVHFDPRRFLETNRWDWGRGSSSADFTDTTKPGVIVARD 268
Query: 225 ES--HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+ +++++KP T V DN+ E+ A+ R + +Q+ + + R
Sbjct: 269 DDAGYLIINKPPSTPVHARVDNLVENVASSVGRMFWMERRESILNQLHDDVD------RA 322
Query: 283 QEY--CSIFHRKIREKKVKKLYLALT 306
EY RK R++K+++L T
Sbjct: 323 GEYDDGQATKRKRRKQKIEQLVYVAT 348
>gi|384084825|ref|ZP_09996000.1| RluA family pseudouridine synthase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 317
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 225 ESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+SHV VL+KP+G +V G + I E+ A L H++D T GC+VL+
Sbjct: 96 DSHVLVLNKPSGLAVHGGSGLSWGIIEALRQLRPEA----RELELVHRLDRDTSGCLVLS 151
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALT 306
+ + H +R+ +++K YL LT
Sbjct: 152 KKRSALRALHEALRQGQMEKQYLTLT 177
>gi|121634072|ref|YP_974317.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis FAM18]
gi|385327565|ref|YP_005881868.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha710]
gi|385338903|ref|YP_005892776.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis WUE 2594]
gi|416176389|ref|ZP_11609639.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M6190]
gi|416190031|ref|ZP_11615511.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ES14902]
gi|421541540|ref|ZP_15987657.1| pseudouridine synthase [Neisseria meningitidis NM255]
gi|433474673|ref|ZP_20432021.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
88050]
gi|433491684|ref|ZP_20448786.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM586]
gi|433493790|ref|ZP_20450866.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM762]
gi|433495906|ref|ZP_20452955.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7089]
gi|433497906|ref|ZP_20454923.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7124]
gi|433499979|ref|ZP_20456971.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM174]
gi|433502119|ref|ZP_20459090.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM126]
gi|433514568|ref|ZP_20471344.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2004090]
gi|433516784|ref|ZP_20473538.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
96023]
gi|433523019|ref|ZP_20479692.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97020]
gi|433527361|ref|ZP_20483974.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3652]
gi|433529452|ref|ZP_20486052.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3642]
gi|433531574|ref|ZP_20488143.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2007056]
gi|433533769|ref|ZP_20490318.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2001212]
gi|120865778|emb|CAM09507.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis FAM18]
gi|308388417|gb|ADO30737.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha710]
gi|319411317|emb|CBY91728.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis WUE 2594]
gi|325133121|gb|EGC55793.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M6190]
gi|325139089|gb|EGC61635.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis ES14902]
gi|402319909|gb|EJU55413.1| pseudouridine synthase [Neisseria meningitidis NM255]
gi|432212733|gb|ELK68668.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
88050]
gi|432230704|gb|ELK86376.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM586]
gi|432231968|gb|ELK87623.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM762]
gi|432237089|gb|ELK92689.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7124]
gi|432237548|gb|ELK93141.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
M7089]
gi|432237889|gb|ELK93478.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM174]
gi|432243331|gb|ELK98843.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM126]
gi|432256232|gb|ELL11555.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2004090]
gi|432256576|gb|ELL11898.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
96023]
gi|432262892|gb|ELL18123.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97020]
gi|432267430|gb|ELL22608.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3652]
gi|432269594|gb|ELL24751.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2007056]
gi|432270103|gb|ELL25250.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM3642]
gi|432274322|gb|ELL29415.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2001212]
Length = 330
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|348029689|ref|YP_004872375.1| pseudouridine synthase [Glaciecola nitratireducens FR1064]
gi|347947032|gb|AEP30382.1| pseudouridine synthase Rlu family protein [Glaciecola
nitratireducens FR1064]
Length = 238
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+++ +VL+KP G + + + I + AL L H++D+ T GC++
Sbjct: 3 KLVLDNPDFLVLNKPCGMPMHDSAEAIVP-----MAEALFNVDKLWLVHRLDSDTSGCIL 57
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LA+ ++ + F ++ EK ++K YLAL
Sbjct: 58 LAKNKDAAAEFGKQFAEKTIQKYYLAL 84
>gi|254564943|ref|XP_002489582.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|238029378|emb|CAY67301.1| DRAP deaminase, catalyzes the third step of the riboflavin
biosynthesis pathway [Komagataella pastoris GS115]
gi|328350006|emb|CCA36406.1| DRAP deaminase [Komagataella pastoris CBS 7435]
Length = 547
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 179 EAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
E + ++ +VD ++ G + +H P D I + V++KP+G V
Sbjct: 98 EVKLNDQVANVDSVLRNGDLISHRIHRHEPPVTLD---EIEIAYEDDEITVINKPSGIPV 154
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
T S + +G T T +++D T G + L +T + ++I+E+ V
Sbjct: 155 HPTGRYRHNSITMIMKQEMG--TIAHTCNRLDRLTSGIMFLGKTAMKTAKMVQQIKERNV 212
Query: 299 KKLYLALTTAPLPVGIMTHYMRPINIAPRLV---------SEGKTIF 336
K+Y+A P+G+ + I PRL E KT+F
Sbjct: 213 GKVYIAKCKGKFPLGLQVVDKPLLTIDPRLTFNLVDLEDGKEAKTLF 259
>gi|350563084|ref|ZP_08931907.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
gi|349779950|gb|EGZ34291.1| pseudouridine synthase, RluA family [Thioalkalimicrobium aerophilum
AL3]
Length = 316
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + +V++KP G +V G + + A L + H++D T G ++L
Sbjct: 90 ILFEDDDLIVINKPPGMAVHGGS-GVSWGLIELVRNARPLAKRVELVHRLDRDTSGAIIL 148
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ H+++R+ +V K+Y AL P
Sbjct: 149 AKKMSVLRDLHQQVRDHQVTKVYWALVKGQWP 180
>gi|409123707|ref|ZP_11223102.1| RNA pseudouridylate synthase [Gillisia sp. CBA3202]
Length = 284
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT---THQIDNCTEGCVVLARTQEY 285
V++KPAG G E F L L H++DN T G +++A+T+
Sbjct: 91 VINKPAGYPTSGNYFKTIEQALPFNLEPSTLPDALPYPIPVHRLDNPTSGLLIVAKTKSA 150
Query: 286 CSIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
H+ +KK++K YLAL T P+ H
Sbjct: 151 QLKLHQDFEDKKIQKTYLALVTGETPLEDSIH 182
>gi|261493033|ref|ZP_05989574.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496687|ref|ZP_05993066.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307656|gb|EEY08980.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311310|gb|EEY12472.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 320
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ S+I+ +S +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELESQILYEDDSMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|118581355|ref|YP_902605.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118504065|gb|ABL00548.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 310
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGT----TDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
I+ + +++KP+G ++ T T+ +E+ A A R G L +++D T G
Sbjct: 80 ILYEDDQIAIVNKPSGLAMHRTAEQETNLVEQGTAFMAWR--GTPCKLYPVNRLDRGTSG 137
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPVGIM 315
V+LA++ IF R+++E + KLYLAL P G++
Sbjct: 138 AVILAKSSTAAGIFGRQVKETGLDKLYLALVAGRPDGAGVI 178
>gi|119478176|ref|ZP_01618232.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [marine gamma
proteobacterium HTCC2143]
gi|119448685|gb|EAW29929.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [marine gamma
proteobacterium HTCC2143]
Length = 328
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ + ++++KP+G +V G + + AL + P L H++D T G
Sbjct: 102 ILYEDDRLLIINKPSGLAVHGGS-----GISQGLIEALRVLRPEARFLELVHRLDRDTSG 156
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-----------PLPVGIMTHYMRPINI 324
CV++A+ + H ++R K+ K YLAL + PL + R +N+
Sbjct: 157 CVMIAKKRSMLRHLHEQLRSGKIDKRYLALVSGRWPQKRRVVNEPLLKNSLQSGERMVNV 216
Query: 325 APRLVSEGK 333
AP EGK
Sbjct: 217 AP----EGK 221
>gi|229029062|ref|ZP_04185161.1| Pseudouridine synthase [Bacillus cereus AH1271]
gi|228732342|gb|EEL83225.1| Pseudouridine synthase [Bacillus cereus AH1271]
Length = 307
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---VEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
++KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|336315777|ref|ZP_08570684.1| pseudouridine synthase, RluA family [Rheinheimera sp. A13L]
gi|335879924|gb|EGM77816.1| pseudouridine synthase, RluA family [Rheinheimera sp. A13L]
Length = 319
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 193 VEAGTYLRV-----HVHPKRFPRCYDI----DWNSRIIAVTESHVVLDKPAGTSVGGTTD 243
++AG +RV H P++ P + + S II +VL+KP G +V G
Sbjct: 61 LQAGDQVRVPPLIVHDEPEKEPVSTGLSMVKNLESHIIFEDNDLIVLNKPTGMAVHGG-- 118
Query: 244 NIEESCATF----ASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
S +F A RAL T L H++D T GC+++A+ + + H ++R K V
Sbjct: 119 ----SGLSFGVIEALRALRPTARHLELVHRLDRDTSGCLLIAKKRSVLTNLHEQLRLKTV 174
Query: 299 KKLYLALTTA 308
+K Y AL
Sbjct: 175 EKKYWALVAG 184
>gi|433520986|ref|ZP_20477688.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
gi|432262770|gb|ELL18005.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
61103]
Length = 330
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|78485672|ref|YP_391597.1| pseudouridine synthase RluA-like protein [Thiomicrospira crunogena
XCL-2]
gi|78363958|gb|ABB41923.1| Pseudouridine synthase, Rlu family protein [Thiomicrospira
crunogena XCL-2]
Length = 238
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEE---SCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ + +V+DKPAG + D+ + F + LG+ L H++D T G
Sbjct: 10 VVFQSTEFIVVDKPAGMNFHSEPDSDGQKQPGLVVFVQQQLGVEE-LYPVHRLDKMTSGL 68
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
V+ A ++ F + ++++K YLA++T
Sbjct: 69 VIFALSKASAKAFQQLFESRQIQKFYLAIST 99
>gi|385323347|ref|YP_005877786.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis 8013]
gi|261391734|emb|CAX49183.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C; rRNA pseudouridylate synthase C) [Neisseria
meningitidis 8013]
Length = 330
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|374292582|ref|YP_005039617.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
gi|357424521|emb|CBS87400.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
Length = 354
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ ++KPAG +V GGT + A R G P + H++D T G ++LART
Sbjct: 128 IAINKPAGLAVQGGTGTSKHLDAMLDALRFDGNERP-KLVHRLDKDTSGVLLLARTTFAA 186
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
S R V+K+Y A+T VG+ T Y I++A L EG
Sbjct: 187 SKLTELFRGSAVRKIYWAVT-----VGVPTPYQGKIDLA--LAKEG 225
>gi|68488860|ref|XP_711730.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
gi|46433052|gb|EAK92508.1| hypothetical protein CaO19.2788 [Candida albicans SC5314]
Length = 402
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGI 314
T G +VLA+T+ F + +R+ K +K YLA + P GI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQHTEKTYLARVSGKFPEGI 204
>gi|338533727|ref|YP_004667061.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
gi|337259823|gb|AEI65983.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
Length = 316
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 178 REAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAG-- 235
R A+K +T AG ++ V V + D D+ ++ +S V +DKPAG
Sbjct: 49 RPAKKGLTLT-------AGQHIAVEVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRP 101
Query: 236 -----TSVGGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ GT N E + A+ +R GL H++D T G VV ART++
Sbjct: 102 SHPLQSGETGTVANALVARYPECAQASVDAREGGLC------HRLDVETSGVVVAARTRD 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+ + V K YLAL T PL
Sbjct: 156 AWNAVREAFGSRAVDKRYLALVTGPL 181
>gi|218767110|ref|YP_002341622.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis Z2491]
gi|421549758|ref|ZP_15995768.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|433470438|ref|ZP_20427838.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
68094]
gi|433476776|ref|ZP_20434104.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70012]
gi|433478931|ref|ZP_20436230.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63041]
gi|433518977|ref|ZP_20475704.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
65014]
gi|433525238|ref|ZP_20481884.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
69096]
gi|433537960|ref|ZP_20494447.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70030]
gi|433540132|ref|ZP_20496589.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63006]
gi|121051118|emb|CAM07389.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis Z2491]
gi|254672162|emb|CBA04981.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha275]
gi|402331709|gb|EJU67041.1| pseudouridine synthase [Neisseria meningitidis 69166]
gi|432211871|gb|ELK67815.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
68094]
gi|432217929|gb|ELK73794.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70012]
gi|432218905|gb|ELK74757.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63041]
gi|432256942|gb|ELL12253.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
65014]
gi|432263386|gb|ELL18606.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
69096]
gi|432276100|gb|ELL31162.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
70030]
gi|432278113|gb|ELL33157.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
63006]
Length = 330
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|385850466|ref|YP_005896981.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M04-240196]
gi|385854378|ref|YP_005900891.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240355]
gi|325203319|gb|ADY98772.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M01-240355]
gi|325205289|gb|ADZ00742.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis M04-240196]
Length = 330
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RAFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|288958958|ref|YP_003449299.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288911266|dbj|BAI72755.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 354
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ ++KPAG +V GGT + A R G P + H++D T G ++LART
Sbjct: 128 IAINKPAGLAVQGGTGTSKHLDAMLDALRFDGNERP-KLVHRLDKDTSGVLLLARTTFAA 186
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
S R V+K+Y A+T VG+ T Y I++A L EG
Sbjct: 187 SKLTELFRGSAVRKIYWAVT-----VGVPTPYQGKIDLA--LAKEG 225
>gi|433535853|ref|ZP_20492372.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
gi|432276274|gb|ELL31332.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
77221]
Length = 330
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKP+G +V G + + RA L H++D T G +++
Sbjct: 96 IVYEDDALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|372324245|ref|ZP_09518834.1| ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
gi|366983053|gb|EHN58452.1| ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
Length = 303
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL------GLTTPLRTTHQIDNCT 273
I+ + +++DKPAG + + N ++ F AL GL H+ID T
Sbjct: 87 IVYENDDCIIVDKPAGMKMHPHSPNETDTLLNFVQAALAGRRSHGLPASAYMVHRIDTDT 146
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL--PVGIMT 316
G V++A ++ ++ I +K +K+ YLA + L P G++T
Sbjct: 147 SGLVLIATNPLAAAVLNQLIAKKIIKRTYLAWVSGHLSEPNGVIT 191
>gi|418070160|ref|ZP_12707435.1| pseudouridine synthase [Lactobacillus rhamnosus R0011]
gi|423080100|ref|ZP_17068766.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|357539580|gb|EHJ23597.1| pseudouridine synthase [Lactobacillus rhamnosus R0011]
gi|357543904|gb|EHJ25911.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
Length = 300
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 31/139 (22%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLPAHGWIILPIG 186
Query: 314 IMT-HYMRPINIAPRLVSE 331
+ T YMR R+VSE
Sbjct: 187 VSTGFYMR------RVVSE 199
>gi|241949279|ref|XP_002417362.1| DRAP deaminase, putative; hydrolase, putative [Candida dubliniensis
CD36]
gi|223640700|emb|CAX45011.1| DRAP deaminase, putative [Candida dubliniensis CD36]
Length = 405
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 216 WNSRIIAVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+N I ++ E + +V+DKP+G T + S + + + + + T H++D T
Sbjct: 103 YNDIIKSIYEDNEILVVDKPSGIPTHPTGNYYHNSLSEIIKQQYNMDS-IWTCHRLDKVT 161
Query: 274 EGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGI 314
G +VLA+T+ F + +R+ K KK YLA + P GI
Sbjct: 162 SGVLVLAKTKNGGVKFSKLMRDSKQHTKKTYLARVSGKFPEGI 204
>gi|452749088|ref|ZP_21948858.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
NF13]
gi|452006914|gb|EMD99176.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
NF13]
Length = 294
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+R+H + P + + RI+ V E VV DKP SV + + E+ + LG
Sbjct: 64 MRIHYF-REVPNETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLGKRLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
L H+ID T G V+ + +E + RE+++ K Y A+ A
Sbjct: 123 -NADLVPIHRIDRLTAGLVLFSANRESRGAYQALFREREISKRYEAICPA 171
>gi|344199259|ref|YP_004783585.1| RluA family pseudouridine synthase [Acidithiobacillus ferrivorans
SS3]
gi|343774703|gb|AEM47259.1| pseudouridine synthase, RluA family [Acidithiobacillus ferrivorans
SS3]
Length = 317
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VLDKP+G +V G + I E+ A L H++D T GC++L++ +
Sbjct: 100 LVLDKPSGLAVHGGSGLSWGIIEALRQLRPDA----RELELVHRLDRDTSGCLILSKKRS 155
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
H +RE ++K YLAL
Sbjct: 156 ALRALHEALREGLMEKRYLALAAG 179
>gi|421770464|ref|ZP_16207159.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|421772414|ref|ZP_16209070.1| pseudouridine synthase [Lactobacillus rhamnosus LRHMDP3]
gi|411181984|gb|EKS49141.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|411183982|gb|EKS51117.1| pseudouridine synthase [Lactobacillus rhamnosus LRHMDP3]
Length = 300
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 31/139 (22%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLPAHGWIVLPIG 186
Query: 314 IMT-HYMRPINIAPRLVSE 331
+ T YMR R+VSE
Sbjct: 187 VSTGFYMR------RVVSE 199
>gi|418289652|ref|ZP_12901914.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM220]
gi|372203157|gb|EHP16871.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis NM220]
Length = 330
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQI 269
R +D+ + ++ +V+DKP+G +V G + + RA L H++
Sbjct: 92 RTFDVVYED------DALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRL 144
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +++A+ + H IR KK+YLAL LP
Sbjct: 145 DKDTSGLLMVAKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|238878813|gb|EEQ42451.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 402
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYYNSLSEIIKQQLNIDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGI 314
T G +VLA+T+ F + +R+ K +K YLA + P GI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGI 204
>gi|261400963|ref|ZP_05987088.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica ATCC 23970]
gi|269209209|gb|EEZ75664.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica ATCC 23970]
Length = 295
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKP+G +V G + + RA L H++D T G +++
Sbjct: 61 IVYEDDALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMV 119
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 120 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 151
>gi|229551713|ref|ZP_04440438.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus rhamnosus
LMS2-1]
gi|258539108|ref|YP_003173607.1| pseudouridine synthase [Lactobacillus rhamnosus Lc 705]
gi|385834766|ref|YP_005872540.1| RluA family pseudouridine synthase [Lactobacillus rhamnosus ATCC
8530]
gi|229314918|gb|EEN80891.1| 23S rRNA pseudouridylate synthase RluD [Lactobacillus rhamnosus
LMS2-1]
gi|257150784|emb|CAR89756.1| Pseudouridine synthase [Lactobacillus rhamnosus Lc 705]
gi|355394257|gb|AER63687.1| pseudouridine synthase, RluA family protein [Lactobacillus
rhamnosus ATCC 8530]
Length = 300
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 31/139 (22%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIILPIG 186
Query: 314 IMT-HYMRPINIAPRLVSE 331
+ T YMR R+VSE
Sbjct: 187 VSTGFYMR------RVVSE 199
>gi|423455161|ref|ZP_17432014.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|401134944|gb|EJQ42551.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
Length = 307
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
P+G + GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEQMDTHPSGKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYTALVEGKV 180
>gi|390455671|ref|ZP_10241199.1| pseudouridine synthase [Paenibacillus peoriae KCTC 3763]
Length = 309
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 185 RITHVDQIVEAGTYLRVHVHP----KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H I G LR+ + P PR YD+ +I+ + +V+ KPAG +V
Sbjct: 55 RLRHEKGIEHTGDRLRLALFPVMDLGVIPRWYDL----KILYEDDFCLVVHKPAGMAVHP 110
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
GG D ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 111 DGGVKDGPLTLDHAVASYYE-INGIHAAVRHVHRLDVDTTGPVLYAKNEFALLKLDEQMR 169
Query: 295 EKKVKKLYLALTTAPLPVGIMT 316
K + + Y+AL +P + T
Sbjct: 170 AKAIDRRYVALVRGEVPSTLRT 191
>gi|73666929|ref|YP_302945.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
gi|72394070|gb|AAZ68347.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
Length = 308
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 193 VEAGTYLRVHVHPKRFPR---CYDIDWNSRIIAVTESHV-VLDKPAGTSV-GGTTDNIEE 247
++ T + +H KR + Y I+ S I + V +++KPAG SV GGT I
Sbjct: 62 IKCNTIIGEEIHTKRICKTDSSYLINLISNSILYEDDDVLIINKPAGVSVQGGTKVRISI 121
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
S R +R H++D T G ++LAR + + + ++V+K YLALT
Sbjct: 122 SDILDKIRD---GESMRIVHRLDKDTSGILMLARNARASRLIMHEFKNRRVEKKYLALTQ 178
Query: 308 A 308
Sbjct: 179 G 179
>gi|325972566|ref|YP_004248757.1| pseudouridine synthase [Sphaerochaeta globus str. Buddy]
gi|324027804|gb|ADY14563.1| pseudouridine synthase [Sphaerochaeta globus str. Buddy]
Length = 417
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLR-TTHQIDNCTEGCV 277
I+ E VV++KP+G SV G T + +S T R L PL+ TH++D T G +
Sbjct: 208 IVYQDEHIVVVNKPSGLLSVPGRTQDKIDSVET-RIRLLYPHAPLQCATHRLDMDTSGLL 266
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
V+A ++ S H + RE++VKK Y+AL
Sbjct: 267 VVALNKQAHSRMHIQFREQQVKKSYIAL 294
>gi|363756212|ref|XP_003648322.1| hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891522|gb|AET41505.1| Hypothetical protein Ecym_8220 [Eremothecium cymbalariae
DBVPG#7215]
Length = 379
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ +S +V++KP G + + + L P+ H++D T G ++
Sbjct: 109 IVYEDDSILVINKPCGIPIHPIAYYYKNTLTEMLKD--NLNYPVFPCHRLDKITSGILIF 166
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLA 304
A+ Q+ S+ +IRE+ +KKLYLA
Sbjct: 167 AKNQDTASVLQAQIRERTMKKLYLA 191
>gi|54114079|gb|AAV29673.1| NT02FT1763 [synthetic construct]
Length = 309
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|260428027|ref|ZP_05782006.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
gi|260422519|gb|EEX15770.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
Length = 351
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + GL R H++D T G ++LART+
Sbjct: 101 DDHIIALNKPPGLPVQGGSKTTRHVDGLSEALRFGLDEKPRLVHRLDKDTSGVLLLARTR 160
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
IR K+ +K+Y A+ G+ T Y+ I A
Sbjct: 161 AVAQALTAAIRHKQTRKIYWAVV-----AGVPTPYLGEIRYA 197
>gi|258507862|ref|YP_003170613.1| pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|385827545|ref|YP_005865317.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|257147789|emb|CAR86762.1| Pseudouridine synthase [Lactobacillus rhamnosus GG]
gi|259649190|dbj|BAI41352.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
Length = 300
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 31/139 (22%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIVLPIG 186
Query: 314 IMT-HYMRPINIAPRLVSE 331
+ T YMR R+VSE
Sbjct: 187 VSTGFYMR------RVVSE 199
>gi|208780244|ref|ZP_03247586.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
gi|208743893|gb|EDZ90195.1| pseudouridine synthase, RluA family [Francisella novicida FTG]
Length = 309
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|68488811|ref|XP_711752.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
gi|46433075|gb|EAK92530.1| hypothetical protein CaO19.10304 [Candida albicans SC5314]
Length = 402
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 214 IDWNSRII-AVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
I W++ II +V E +V+DKP+G T + S + + L + + + T H++D
Sbjct: 100 IPWHNDIIKSVYEDDEILVVDKPSGIPTHPTGNYYFNSLSEIIKQQLNMDS-IWTCHRLD 158
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGI 314
T G +VLA+T+ F + +R+ K +K YLA + P GI
Sbjct: 159 KVTSGVLVLAKTKNGGVRFSKLMRDSKQYTEKTYLARVSGKFPEGI 204
>gi|229057021|ref|ZP_04196415.1| Pseudouridine synthase [Bacillus cereus AH603]
gi|228720298|gb|EEL71874.1| Pseudouridine synthase [Bacillus cereus AH603]
Length = 307
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL A +
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEAKV 180
>gi|156742179|ref|YP_001432308.1| pseudouridine synthase [Roseiflexus castenholzii DSM 13941]
gi|156233507|gb|ABU58290.1| pseudouridine synthase [Roseiflexus castenholzii DSM 13941]
Length = 309
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 228 VVLDKPAGTSVGGTTDNIE----ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ LDKP T V T + E + A F G PL H++D T G ++L++
Sbjct: 85 IALDKPIDTYVEATPWDAEGHLRAALAHFLEVRDGSAPPLHLAHRLDRDTSGVLLLSKAP 144
Query: 284 EYCSIFHRKIREKKVKKLYLAL 305
+ + R RE V+K YLAL
Sbjct: 145 DVNAALQRAFREGAVRKTYLAL 166
>gi|421858698|ref|ZP_16290961.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410831767|dbj|GAC41398.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 295
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 190 DQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESC 249
D+I AG LR+H+ P+ D + I+ ++ +V KPAG +V TT E+
Sbjct: 49 DKIQTAGDRLRMHLFPEEATTTKPADEPAEILYEDDAVLVAYKPAGMAVHATTAEQEKRR 108
Query: 250 ATFAS------RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
A A G + +R H++D T G V++A+ ++ +R K +++ Y
Sbjct: 109 AGLAHAVACHYEWTGQSLRVRHIHRLDTDTTGPVLIAKHALPHAVLDADMRSKVIRRSYA 168
Query: 304 AL 305
A+
Sbjct: 169 AI 170
>gi|170747290|ref|YP_001753550.1| RluA family pseudouridine synthase [Methylobacterium radiotolerans
JCM 2831]
gi|170653812|gb|ACB22867.1| pseudouridine synthase, RluA family [Methylobacterium radiotolerans
JCM 2831]
Length = 471
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL----RTTHQIDNCTEGCVVLARTQ 283
++L+KP G +V G + + A+ LT P R H++D T GC+++A+T+
Sbjct: 240 MILNKPFGLAVQGGSGTVRHVDGLLAA----LTGPDGQKPRLVHRLDKDTAGCLIIAKTR 295
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ + R + +K+Y ALT
Sbjct: 296 LAAATLAKSFRSRAARKIYWALTAG 320
>gi|89257067|ref|YP_514429.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica LVS]
gi|115315423|ref|YP_764146.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica OSU18]
gi|254368306|ref|ZP_04984325.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica 257]
gi|422939322|ref|YP_007012469.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC200]
gi|89144898|emb|CAJ80243.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica LVS]
gi|115130322|gb|ABI83509.1| pseudouridylate synthase [Francisella tularensis subsp. holarctica
OSU18]
gi|134254115|gb|EBA53209.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica 257]
gi|407294473|gb|AFT93379.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC200]
Length = 309
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|254373560|ref|ZP_04989047.1| hypothetical protein FTCG_01516 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151571285|gb|EDN36939.1| hypothetical protein FTCG_01516 [Francisella novicida GA99-3549]
Length = 309
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|56707234|ref|YP_169130.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110669704|ref|YP_666261.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC198]
gi|118498217|ref|YP_899267.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida U112]
gi|194324401|ref|ZP_03058174.1| pseudouridine synthase, RluA family [Francisella novicida FTE]
gi|254369904|ref|ZP_04985913.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC022]
gi|254369919|ref|ZP_04985927.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC033]
gi|254375025|ref|ZP_04990505.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida GA99-3548]
gi|254874072|ref|ZP_05246782.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis MA00-2987]
gi|379716435|ref|YP_005304771.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TIGB03]
gi|379725118|ref|YP_005317304.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TI0902]
gi|385793807|ref|YP_005830213.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis NE061598]
gi|421754660|ref|ZP_16191627.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700075]
gi|56603726|emb|CAG44688.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110320037|emb|CAL08071.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC198]
gi|118424123|gb|ABK90513.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida U112]
gi|151568165|gb|EDN33819.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis FSC033]
gi|151572743|gb|EDN38397.1| ribosomal large subunit pseudouridine synthase C [Francisella
novicida GA99-3548]
gi|157122874|gb|EDO66991.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FSC022]
gi|194321466|gb|EDX18951.1| pseudouridine synthase, RluA family [Francisella tularensis subsp.
novicida FTE]
gi|254840071|gb|EET18507.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282158342|gb|ADA77733.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis NE061598]
gi|377826567|gb|AFB79815.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TI0902]
gi|377828112|gb|AFB78191.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis TIGB03]
gi|409090702|gb|EKM90714.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700075]
Length = 309
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|304389307|ref|ZP_07371272.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|304327425|gb|EFL94658.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
Length = 304
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+ AG L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLA-AGNLLEIDIPEPTGYVPEATRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP 326
+Y AL T + PVG + PI AP
Sbjct: 168 IYTALATGKVKPPVGTIDA---PIGRAP 192
>gi|385793628|ref|YP_005826604.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678953|gb|AEE88082.1| Ribosomal large subunit pseudouridine synthase C [Francisella cf.
novicida Fx1]
Length = 309
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAIV 175
>gi|114320585|ref|YP_742268.1| ribosomal large subunit pseudouridine synthase C [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226979|gb|ABI56778.1| ribosomal large subunit pseudouridine synthase C [Alkalilimnicola
ehrlichii MLHE-1]
Length = 327
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+ RI+ + +V+DKP+G +V G + + +A L H++D T
Sbjct: 95 ELAQRILYEDDRLLVIDKPSGLAVHGGS-GLAWGLIEVLRQARPSAPFLELVHRLDRATS 153
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
GC+++A+ + H ++R V K YLAL T L G
Sbjct: 154 GCLMVAKRRSALRELHEQLRTGAVHKRYLALLTGALGRG 192
>gi|71083779|ref|YP_266499.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1062]
gi|91763185|ref|ZP_01265149.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062892|gb|AAZ21895.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1062]
gi|91717598|gb|EAS84249.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter ubique HTCC1002]
Length = 304
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II + +VL+K +G SV G T + + FA + T + H++D T G ++
Sbjct: 92 IIDNNDDFIVLNKSSGISVQGGTKSKKNLVDIFARSEIFQDTKPFSVHRLDKDTSGVFIM 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A+ ++ + R +KV K YLA+ L
Sbjct: 152 AKHRQSAQLLTSLFRLRKVHKTYLAICHGEL 182
>gi|393768106|ref|ZP_10356648.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392726499|gb|EIZ83822.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 469
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
++L+KP G +V G + + A+ LT P R H++D T GC+++A+T+
Sbjct: 238 MILNKPFGLAVQGGSGTVRHVDGLLAA----LTGPDGQKPRLVHRLDKDTAGCLIIAKTR 293
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ + R + +K+Y ALT
Sbjct: 294 LAAATLAKSFRSRAARKIYWALTAG 318
>gi|156503277|ref|YP_001429342.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|290954356|ref|ZP_06558977.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica URFT1]
gi|423051448|ref|YP_007009882.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica F92]
gi|156253880|gb|ABU62386.1| pseudouridine synthase, Rlu family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421952170|gb|AFX71419.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. holarctica F92]
Length = 309
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMTVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI 174
>gi|56416692|ref|YP_153766.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222475057|ref|YP_002563472.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
gi|255003036|ref|ZP_05278000.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Puerto Rico]
gi|255004159|ref|ZP_05278960.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Virginia]
gi|56387924|gb|AAV86511.1| ribosomal large subunit pseudouridine synthase [Anaplasma marginale
str. St. Maries]
gi|222419193|gb|ACM49216.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Florida]
Length = 296
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQE 284
+ ++KPAG SV G + L P R H++D T G +VLAR +
Sbjct: 99 IAINKPAGVSVQGGS-----KVKVSIDDVLDKIKPGECCRIVHRLDKDTSGVLVLARNLD 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTA-PLP 311
R+ RE++VKK Y+A+T P P
Sbjct: 154 VARYLAREFRERRVKKEYIAVTRGVPQP 181
>gi|134301269|ref|YP_001121237.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis WY96-3418]
gi|421750987|ref|ZP_16188046.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis AS_713]
gi|421752843|ref|ZP_16189854.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 831]
gi|421756575|ref|ZP_16193479.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700103]
gi|421758440|ref|ZP_16195287.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70102010]
gi|424673678|ref|ZP_18110612.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70001275]
gi|134049046|gb|ABO46117.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis WY96-3418]
gi|409089205|gb|EKM89257.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 831]
gi|409089298|gb|EKM89349.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis AS_713]
gi|409092338|gb|EKM92314.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70102010]
gi|409093444|gb|EKM93389.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 80700103]
gi|417435673|gb|EKT90552.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. tularensis 70001275]
Length = 309
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GCV+LA+ F +++KV K+Y A+
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYAI 174
>gi|374852556|dbj|BAL55487.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
gi|374857372|dbj|BAL60225.1| ribosomal large subunit pseudouridine synthase D [uncultured
candidate division OP1 bacterium]
Length = 240
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 228 VVLDKPAGTSVGGTTDNIEE----SCATFASRALGLTTPLRTT--HQIDNCTEGCVVLAR 281
++++KPAG + G ++ E + A R+ G+ + + H++D T G VLA+
Sbjct: 14 LIVNKPAGVLMHGDRRHVGEPTLLAWALEHVRSSGVASDFQPAFVHRLDKETSGVAVLAK 73
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPL-PVG-IMTHYMRPIN 323
T++ +R+++ KK++K YLAL + P G I H + ++
Sbjct: 74 TKDAVRALNRQLKLKKIQKEYLALVVGEIDPQGSIRLHLQKQMD 117
>gi|378835691|ref|YP_005204967.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis GDL-1]
gi|385858120|ref|YP_005904631.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis MCLD]
gi|423262959|ref|YP_007012984.1| Ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis SK76]
gi|330723209|gb|AEC45579.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis MCLD]
gi|367460476|gb|AEX13999.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis GDL-1]
gi|422035496|gb|AFX74338.1| Ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis SK76]
Length = 294
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 192 IVEAGTYLRVHVHPKR---FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
I++ G+ + VH K + DI+ +I+ E+ +V+DKP V N E +
Sbjct: 48 ILKQGSQIEVHYQEKEQNIIAKAQDIEL--KIVFEDENVIVVDKPTNMVVHPAPGNYENT 105
Query: 249 CAT-----FASRALGLTTPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
FA + + LR H++D T G +++A+ + + ++++E+K+K+
Sbjct: 106 LVNALVYKFAQLS-NVNGSLRPGIVHRLDKDTSGLMLVAKNDKMHNFLAQQLKERKIKRK 164
Query: 302 YLALTTAPLPVGIMTHYMRPI 322
Y A+ L I +H PI
Sbjct: 165 YYAIIEGQLENQI-SHINLPI 184
>gi|313667509|ref|YP_004047793.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica 020-06]
gi|313004971|emb|CBN86399.1| ribosomal large subunit pseudouridine synthase C [Neisseria
lactamica 020-06]
Length = 330
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKP+G +V G + + RA L H++D T G +++
Sbjct: 96 IVYEDDALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|406960537|gb|EKD87564.1| Pseudouridine synthase [uncultured bacterium]
Length = 219
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT---HQIDNCTEGC 276
I+ E +V++KP G V EE+ +A + L T+ + + H+ID T GC
Sbjct: 5 ILFEDEDLLVINKPPGIVVNRAQSVKEETIEDWAGKKL--TSQVERSGIVHRIDKETSGC 62
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+++A+T R+ +E+++ K YLA+ L
Sbjct: 63 LLIAKTPHVFFELQRQFKEREIHKTYLAIVHGSL 96
>gi|402575151|ref|YP_006608043.1| RluA family pseudouridine synthase [Candidatus Portiera
aleyrodidarum BT-B-HRs]
gi|407453165|ref|YP_006732484.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-QVLC]
gi|407681507|ref|YP_006796683.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-QVLC]
gi|407681788|ref|YP_006796963.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-B-HRs]
gi|401871955|gb|AFQ24123.1| pseudouridine synthase, RluA family [Candidatus Portiera
aleyrodidarum BT-B-HRs]
gi|405779882|gb|AFS18885.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-QVLC]
gi|407243118|gb|AFT80519.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-QVLC]
gi|407243399|gb|AFT80799.1| Ribosomal large subunit pseudouridine synthase C [Candidatus
Portiera aleyrodidarum BT-B-HRs]
Length = 314
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 229 VLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+++KP+G +V GG NI A F R + H++D T GC++LA++ +
Sbjct: 98 IVNKPSGFAVHGGCIGNIGLIDALFLIRKD--LNFIYLVHRLDKNTSGCLLLAKSINFLL 155
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV 312
+ + K V+K YLAL P+
Sbjct: 156 FINFAFKNKYVEKCYLALVEGAWPI 180
>gi|381150267|ref|ZP_09862136.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
gi|380882239|gb|EIC28116.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
Length = 320
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E +V+DKPAG V G + ++ R T L H++D T GC+++A+ +
Sbjct: 104 EGFMVIDKPAGYPVHGGS-GVDAGIIEGLRRLRPEATFLELVHRLDRDTSGCLIVAKKRS 162
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
H R+ + K YLAL
Sbjct: 163 ALRRLHELFRDDHIHKTYLALLAG 186
>gi|421863332|ref|ZP_16295030.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379094|emb|CBX22225.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 330
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKP+G +V G + + RA L H++D T G +++
Sbjct: 96 IVYEDDALLVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|344340218|ref|ZP_08771144.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
gi|343799876|gb|EGV17824.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
Length = 420
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ E +V+DKPAG +V G + + ES R L L H++D T GC
Sbjct: 194 VLYEDERLLVIDKPAGLAVHGGSGLSYGLIESL-----RELRPGRELELVHRLDRDTSGC 248
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+V+++ + H IRE + K YLAL L
Sbjct: 249 LVISKRRSALRELHELIREGGMDKRYLALIVGEL 282
>gi|254994901|ref|ZP_05277091.1| ribosomal large subunit pseudouridine synthase (rluC) [Anaplasma
marginale str. Mississippi]
Length = 296
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQE 284
+ ++KPAG SV G + L P R H++D T G +VLAR +
Sbjct: 99 IAINKPAGVSVQGGS-----KVKVSIDDVLDKIKPGECCRIVHRLDKDTSGVLVLARNLD 153
Query: 285 YCSIFHRKIREKKVKKLYLALTTA-PLP 311
R+ RE++VKK Y+A+T P P
Sbjct: 154 VARYLAREFRERRVKKEYIAVTRGVPQP 181
>gi|255729940|ref|XP_002549895.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132964|gb|EER32521.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 392
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 218 SRIIAVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
RI +V E +V+DKP+G T + S + GL + T H++D T G
Sbjct: 104 GRIKSVYEDDELLVVDKPSGVPTHPTGNYYFNSVSEMVKDQFGLEA-IWTCHRLDKVTSG 162
Query: 276 CVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVGIMTH 317
++ +T+ S F R I++ K +K YLA P G + +
Sbjct: 163 VLIFGKTKSAGSKFSRLIKDHKDQTEKTYLARVVGEFPNGKLQY 206
>gi|199599112|ref|ZP_03212517.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|199590005|gb|EDY98106.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
Length = 300
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGTS----VGGTTDNIEESCATFASRALGLTTPL 263
FP CY+ D ++V++KPAG + VG D++ + + + +
Sbjct: 77 FPICYEDD----------DYLVVNKPAGVASIPAVGRRNDSMANMVKAYLIKTHAESQAV 126
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP----------LPVG 313
++D T G +V A+ S+ R++ + K YLAL T+ LP+G
Sbjct: 127 HVVTRLDRDTSGLMVFAKHSLAHSLLDRQLHSENFLKQYLALVTSKSLLSAHGWIILPIG 186
Query: 314 IMT-HYMRPINI 324
+ T YMR + I
Sbjct: 187 VSTGFYMRRVVI 198
>gi|392380039|ref|YP_004987197.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356882406|emb|CCD03418.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 236
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 218 SRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+RI+ E ++DKPAG +V G TD+++ A G TP R H++D T
Sbjct: 15 ARILHEDEDVFIIDKPAGLAVHKAGRITDHLDLYLPFLAE---GDGTPPRLAHRLDRDTA 71
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
GC+VL R+ V+K Y A++
Sbjct: 72 GCLVLGRSLWALKRLGDMFAAGHVEKTYWAIS 103
>gi|92116023|ref|YP_575752.1| pseudouridine synthase [Nitrobacter hamburgensis X14]
gi|91798917|gb|ABE61292.1| pseudouridine synthase [Nitrobacter hamburgensis X14]
Length = 292
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
+R++ +V+DKPAG V GG N+E A+F + GL P H++D
Sbjct: 12 QARVLHRDGLMLVIDKPAGIPVHRGPKGGA--NLE---ASFEALRFGLPRPPVLAHRLDR 66
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGIMTH 317
T GC+VL R ++ + + K+ K Y A+ T +P+G + H
Sbjct: 67 DTSGCLVLGRHRKATASLGLLFKHGKISKTYWAVVEGGPTEDEGTIDIPLGRLNH 121
>gi|251798409|ref|YP_003013140.1| pseudouridine synthase [Paenibacillus sp. JDR-2]
gi|247546035|gb|ACT03054.1| pseudouridine synthase, RluA family [Paenibacillus sp. JDR-2]
Length = 332
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+VL+KPAG V G T ++E+ A + G P+R H++D+ T G V+ ++
Sbjct: 122 LVLNKPAGMPVHESHSGQTGTLDEAAARWLLEQ-GDPLPVRHIHRLDDDTSGPVLYSKND 180
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ +REK++ + YLA+
Sbjct: 181 LAQWVLDEAMREKRIDRRYLAVVQG 205
>gi|90417736|ref|ZP_01225648.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
gi|90337408|gb|EAS51059.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
Length = 328
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I E V +KPAG +V GG+ N A R+ P R H++D T G +V
Sbjct: 97 LIYEDEKVFVFNKPAGLAVQGGSGLNRHVDKMLEAWRSRKGEKP-RLVHRLDRDTSGVLV 155
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA-LTTAPLP 311
+ART+ + + RE+ KK Y A L P+P
Sbjct: 156 VARTRGAATALTKAFRERDTKKTYWAILKGVPVP 189
>gi|298346986|ref|YP_003719673.1| putative pseudouridylate synthase [Mobiluncus curtisii ATCC 43063]
gi|298237047|gb|ADI68179.1| possible pseudouridylate synthase [Mobiluncus curtisii ATCC 43063]
Length = 304
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+ AG L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLA-AGNLLEIDIPEPTGYVPEVTRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP 326
+Y AL T + PVG + PI AP
Sbjct: 168 IYTALATGKVKPPVGTIDA---PIGRAP 192
>gi|421615834|ref|ZP_16056853.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
KOS6]
gi|409782016|gb|EKN61583.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
KOS6]
Length = 254
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RVH + P + + RI+ V E VV DKP SV + + E+ + LG
Sbjct: 24 MRVHYF-REVPDETPVPFEERILHVDEHLVVADKPHFLSVMPAGEYVNETLLARLCKRLG 82
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T L H+ID T G V+ + +E + R++++ K Y A+ A
Sbjct: 83 -NTDLVPIHRIDRLTAGLVLFSANRESRGAYQALFRQREIAKRYEAICPA 131
>gi|405355381|ref|ZP_11024607.1| Ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397091723|gb|EJJ22525.1| Ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 314
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +DKPAG + T + S LG P H++D T G V
Sbjct: 83 RVLYEDADVIAVDKPAGVTAQPTEGRVGGSLVDLVGEKLG--RPAGLVHRLDRETSGVTV 140
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
++ E S + RE + +K Y+A+ LP+
Sbjct: 141 FGKSAEATSALAAEFREGRARKRYVAVAGPGLPL 174
>gi|315656560|ref|ZP_07909447.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315492515|gb|EFU82119.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 304
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+ AG L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLA-AGNLLEIDIPEPTGYVPEVTRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP 326
+Y AL T + PVG + PI AP
Sbjct: 168 IYTALATGGVKPPVGTIDA---PIGRAP 192
>gi|91784729|ref|YP_559935.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
xenovorans LB400]
gi|91688683|gb|ABE31883.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
xenovorans LB400]
Length = 323
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RII E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 82 RIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 140
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE K+ K Y A
Sbjct: 141 LAKKRSALVNLHEQIRENKMDKRYYA 166
>gi|344943140|ref|ZP_08782427.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344260427|gb|EGW20699.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 319
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LR 264
P+ I+ E ++++KPAG +V G + ++ L L P L
Sbjct: 87 PQGLQAALQQGILFEDEGFLIVNKPAGFAVHGGS-----GVSSGIIEGLRLIRPEAHFLE 141
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
H++D T GC+++A+ + + H R+ + K YLAL
Sbjct: 142 LVHRLDKDTSGCLIIAKKRSALKLLHELFRDNHIHKTYLALLAG 185
>gi|409199833|ref|ZP_11228036.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas flavipulchra
JG1]
Length = 221
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
++IA +VV KP G S + E+ A A L PL H++D T G ++
Sbjct: 5 KLIADEIDYVVAYKPQGLSF-----HSEDGAGFVALLAEQLGYPLFAVHRLDKVTSGLIL 59
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
LA++ E +K+ K YLAL +A
Sbjct: 60 LAKSSEAAKQLTSLFSARKIDKFYLALVSA 89
>gi|52144044|ref|YP_082785.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
E33L]
gi|51977513|gb|AAU19063.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
E33L]
Length = 307
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSVG-------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++KP GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|365885567|ref|ZP_09424561.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. ORS 375]
gi|365285763|emb|CCD97092.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. ORS 375]
Length = 298
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+R++ +V+DKPAG V A+F + GL P H++D T GC+
Sbjct: 13 ARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCL 72
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
VL R ++ + + K+ K Y A+
Sbjct: 73 VLGRHRKATASLGLLFKHGKISKTYWAIVEG 103
>gi|149184985|ref|ZP_01863302.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
gi|148831096|gb|EDL49530.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
Length = 218
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 220 IIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
II +V+DKPAG SV GG +E+ F LG P H++D T
Sbjct: 6 IIFEDGEALVIDKPAGLSVDRPKRGGPC--LEDH---FEQLKLGFQRPPAAVHRLDTDTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
GC++LAR + F + ++ V+K YL + A +P G
Sbjct: 61 GCLLLARNPKALKRFAKAFEDRLVEKRYLGV-LAGIPDG 98
>gi|407717548|ref|YP_006794953.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
gi|407241304|gb|AFT80954.1| pseudouridylate synthase [Leuconostoc carnosum JB16]
Length = 305
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 220 IIAVTESHVVLDKPAGT-----SVGGTTDNIEESCATFASRALGLTTPLRT----THQID 270
I+ + V++DKPAG S+ T + A F R L L+ + H+ID
Sbjct: 87 IVFENDDLVIVDKPAGMKMHPHSITETDTLLNYLAANFQMRQL-LSASAQAKPYMVHRID 145
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
T G V++A+ I +R + EKK+K+ YLA T +
Sbjct: 146 RETSGLVIVAKNPVVVPILNRLLSEKKIKRTYLAWVTGAM 185
>gi|251792493|ref|YP_003007219.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus NJ8700]
gi|422336047|ref|ZP_16417020.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus F0387]
gi|247533886|gb|ACS97132.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus NJ8700]
gi|353346233|gb|EHB90518.1| pseudouridine synthase Rlu family protein [Aggregatibacter
aphrophilus F0387]
Length = 238
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 13 IVINKPNGISV--HKDHADVGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLILALNEKAAV 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
RK E +++K+YLAL+T
Sbjct: 70 TLSRKFAEHQIQKIYLALST 89
>gi|424863214|ref|ZP_18287127.1| rRNA pseudouridylate synthase C [SAR86 cluster bacterium SAR86A]
gi|400757835|gb|EJP72046.1| rRNA pseudouridylate synthase C [SAR86 cluster bacterium SAR86A]
Length = 294
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+ +II ++++V++K AG +V GG+ + I A + G L H++D T
Sbjct: 84 NLKEKIIYEDKNYIVINKDAGIAVHGGSKNYI--GIIDIARKIYGRNIDL--CHRLDKNT 139
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
GC+VLA+ ++ F+ I+ + V+K Y+ + + I+ + RP+
Sbjct: 140 SGCLVLAKNKQSAKHFNNLIKNRLVQKTYVCVLKGNIRKSIVVN--RPV 186
>gi|315655527|ref|ZP_07908426.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
gi|315490182|gb|EFU79808.1| ribosomal large subunit pseudouridine synthase D [Mobiluncus
curtisii ATCC 51333]
Length = 304
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 190 DQIVEAGTYLRVHV-HPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
DQ+V G L + + P + P +D N I+ + VV+DKPAG + T E
Sbjct: 51 DQLV-VGNLLEIDIPEPTGYVPEVTRVD-NLGILYADDDLVVVDKPAGVAAH-TGPGWEG 107
Query: 248 SCATFASRALGL----TTPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKK 300
A RA G+ + P+ H++D T G +V+A+++ + R +V+K
Sbjct: 108 PTVVGALRAAGIRVSTSGPVEREGIVHRLDAGTSGAMVVAKSELAYGKLKNEFRYHRVEK 167
Query: 301 LYLALTTAPL--PVGIMTHYMRPINIAP 326
+Y AL T + PVG + PI AP
Sbjct: 168 IYTALATGGVKPPVGTIDA---PIGRAP 192
>gi|229195588|ref|ZP_04322354.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|423576890|ref|ZP_17553009.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|423606904|ref|ZP_17582797.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
gi|228587837|gb|EEK45889.1| Pseudouridine synthase [Bacillus cereus m1293]
gi|401206640|gb|EJR13428.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|401241094|gb|EJR47486.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
Length = 307
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSVG-------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++KP GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|414176666|ref|ZP_11430895.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410886819|gb|EKS34631.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 243
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIDKTYWAVVEG 103
>gi|381404953|ref|ZP_09929637.1| 23S rRNA pseudouridylate synthase C [Pantoea sp. Sc1]
gi|380738152|gb|EIB99215.1| 23S rRNA pseudouridylate synthase C [Pantoea sp. Sc1]
Length = 318
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTE 274
I+ E+ +V++KP+GT+V G S TF L P L H++D T
Sbjct: 95 ILYEDEALLVMNKPSGTAVHGG------SGLTFGVIEGLRALRPEARFLELVHRLDRDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPIN 323
G +++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 149 GILLVAKKRSALRSLHEQLREKGMQKDYLALVRGNWPSHLKVVQAPLLKNILQSGERVV- 207
Query: 324 IAPRLVSEGK 333
R+ SEGK
Sbjct: 208 ---RVSSEGK 214
>gi|372274145|ref|ZP_09510181.1| 23S rRNA pseudouridylate synthase C [Pantoea sp. SL1_M5]
Length = 318
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 ILFEDESLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGNWPSHLKVVQAPLLKNILQSGERVV--- 207
Query: 326 PRLVSEGKT 334
R+ SEGK
Sbjct: 208 -RVSSEGKA 215
>gi|308186402|ref|YP_003930533.1| pseudouridylate synthase [Pantoea vagans C9-1]
gi|308056912|gb|ADO09084.1| putative pseudouridylate synthase [Pantoea vagans C9-1]
Length = 318
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 ILFEDESLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGNWPSHLKVVQAPLLKNILQSGERVV--- 207
Query: 326 PRLVSEGKT 334
R+ SEGK
Sbjct: 208 -RVSSEGKA 215
>gi|117924690|ref|YP_865307.1| pseudouridine synthase [Magnetococcus marinus MC-1]
gi|117608446|gb|ABK43901.1| pseudouridine synthase [Magnetococcus marinus MC-1]
Length = 255
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
D SR++ ++++KPAG V G N+E A F GL H++D
Sbjct: 10 DLESRLLYRDGLLLIINKPAGIPVHAGPGGGANLE---ALFGGLRFGLPKAPALAHRLDR 66
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
T GC+VL R + S + + KV+K Y A+ P
Sbjct: 67 DTSGCLVLGRHAKALSKLGKLFSQGKVQKTYWAVVQGGPP 106
>gi|390433500|ref|ZP_10222038.1| 23S rRNA pseudouridylate synthase C [Pantoea agglomerans IG1]
Length = 318
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 ILFEDESLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGNWPSHLKVVQAPLLKNILQSGERVV--- 207
Query: 326 PRLVSEGKT 334
R+ SEGK
Sbjct: 208 -RVSSEGKA 215
>gi|262393762|ref|YP_003285616.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|451976046|ref|ZP_21927218.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus E0666]
gi|262337356|gb|ACY51151.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|451930014|gb|EMD77736.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus E0666]
Length = 314
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK YLAL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYLALVMG 183
>gi|338176687|ref|YP_004653497.1| ribosomal large subunit pseudouridine synthase A [Parachlamydia
acanthamoebae UV-7]
gi|336481045|emb|CCB87643.1| ribosomal large subunit pseudouridine synthase A [Parachlamydia
acanthamoebae UV-7]
Length = 226
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALGLTTP--LRTTH 267
DID I+ +V++KPAG T N +E C + + L H
Sbjct: 3 DID----ILYADNHLLVVNKPAGLLTQPTDLNPESLEALCKQWVKQDKNKEGNIFLHAVH 58
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYM 319
++D G ++ ART + S +++REK KK YLA P+ GI+ HY+
Sbjct: 59 RLDKPASGILLFARTSKALSRLSKQMREKHCKKTYLACIDRPISQSEGILEHYL 112
>gi|269967347|ref|ZP_06181408.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus 40B]
gi|269828055|gb|EEZ82328.1| ribosomal large subunit pseudouridine synthase C [Vibrio
alginolyticus 40B]
Length = 368
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 150 IIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 204
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK YLAL
Sbjct: 205 ILLVAKKRSALRHLQAQFREKTVKKFYLALVMG 237
>gi|254476979|ref|ZP_05090365.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
gi|214031222|gb|EEB72057.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
Length = 348
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 193 VEAGTYLRV------HVHPKRFPRCYDIDWNSR-----IIAVTESHVVLDKPAGTSVGGT 241
VEAG +RV + P P D +++ +I ++ +VL+KPAG +V G
Sbjct: 56 VEAGQTVRVPPLPASDLKPAEAPSRRISDADAKMIRGCVIYKDDAVIVLNKPAGLAVQGG 115
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ + + R H++D T G +VLART++ R +K+
Sbjct: 116 SGTTKHVDGLSEALKFDAEEKPRLVHRLDKDTSGVLVLARTRQAAQALTAAFRHHATRKI 175
Query: 302 YLALTTAPLPVGIMTHYMRPIN 323
Y AL G+ T Y+ I
Sbjct: 176 YWALV-----AGVPTPYLGEIK 192
>gi|357384683|ref|YP_004899407.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
gi|351593320|gb|AEQ51657.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
Length = 333
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
D D+ +I + V V +KP G +V G + S P R H++D
Sbjct: 84 DADFLRDLILYEDDDVYVFNKPHGLAVQGGSGTKRHIDGMLKSLPNKKGEPPRLVHRLDR 143
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GC+++A+T+ S F R + +K+Y A+T
Sbjct: 144 DTSGCLLVAKTRAAASHFGTVFRSRSARKIYWAIT 178
>gi|91227385|ref|ZP_01261774.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio alginolyticus
12G01]
gi|91188649|gb|EAS74939.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio alginolyticus
12G01]
Length = 268
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II + ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 50 IIFEDDHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 107
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK VKK YLAL
Sbjct: 108 VAKKRSALRHLQAQFREKTVKKFYLALVMG 137
>gi|383936427|ref|ZP_09989853.1| 23S rRNA pseudouridine955/2504/2580 synthase [Rheinheimera
nanhaiensis E407-8]
gi|383702491|dbj|GAB59944.1| 23S rRNA pseudouridine955/2504/2580 synthase [Rheinheimera
nanhaiensis E407-8]
Length = 317
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALG-LTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + + A RAL L L H++D T GC+++A+ +
Sbjct: 103 IVLNKPSGMAVHGGSGL--QFGVIEALRALRPLAKHLELVHRLDRDTSGCLLIAKKRSVL 160
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
+ H ++R K V+K Y AL
Sbjct: 161 THLHEQLRNKTVEKKYWALVAG 182
>gi|338972397|ref|ZP_08627772.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234561|gb|EGP09676.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
Length = 255
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIDKTYWAVVEG 103
>gi|84499811|ref|ZP_00998099.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
gi|84392955|gb|EAQ05166.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
Length = 347
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 193 VEAGTYLRV-----HVHPKRFPRCYDIDWNSRIIA----VTESHVV-LDKPAGT-SVGGT 241
+EAG +RV P+ PR + ++R+I ++ H+V L+KPAG + GG+
Sbjct: 56 LEAGQVVRVPPLPESAAPEPAPRDAVSEADARLIRDCVLWSDDHIVALNKPAGLPTQGGS 115
Query: 242 TDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
+ + A G P R H++D T G ++LART+ +R K+ +K+
Sbjct: 116 KQSRHVDGLSQALVPAGAEKP-RLVHRLDKDTSGVLLLARTRVAAQGLTAALRHKQTRKI 174
Query: 302 YLALTTAPLPVGIMTHYMRPIN 323
Y AL G+ T Y+ I
Sbjct: 175 YWALV-----AGVPTPYLGEIR 191
>gi|254229869|ref|ZP_04923274.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
gi|151937638|gb|EDN56491.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. Ex25]
Length = 345
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 127 IIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 181
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK YLAL
Sbjct: 182 ILLVAKKRSALRHLQAQFREKTVKKFYLALVMG 214
>gi|26553585|ref|NP_757519.1| pseudouridine synthase [Mycoplasma penetrans HF-2]
gi|26453591|dbj|BAC43923.1| pseudouridine synthase [Mycoplasma penetrans HF-2]
Length = 298
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 216 WNSRIIAVTESHVVL--DKPAGTSVGGTTDNIEESCAT-----FASRALGLT-TPLRT-- 265
W I V E +L +KP V T+ ++ + A F S+ + PLR
Sbjct: 68 WKKDIEIVYEDKYILIVNKPNDIIVHPTSYDLSNTLANIIKYIFDSKKIKYNGDPLRMGI 127
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D CTEG V++A++ + + F + ++K++K YLAL
Sbjct: 128 VHRLDKCTEGLVIVAKSLDSFNAFTKLFLDQKIEKKYLAL 167
>gi|417931603|ref|ZP_12574968.1| pseudouridine synthase, RluA family [Propionibacterium acnes
SK182B-JCVI]
gi|340775546|gb|EGR97599.1| pseudouridine synthase, RluA family [Propionibacterium acnes
SK182B-JCVI]
Length = 306
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQID 270
N RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 79 NMRIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAVSTSGAPERQGIVQRLD 138
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 139 VGTSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|304397213|ref|ZP_07379092.1| pseudouridine synthase, RluA family [Pantoea sp. aB]
gi|440757885|ref|ZP_20937065.1| Ribosomal large subunit pseudouridine synthase C [Pantoea
agglomerans 299R]
gi|304355362|gb|EFM19730.1| pseudouridine synthase, RluA family [Pantoea sp. aB]
gi|436428358|gb|ELP26015.1| Ribosomal large subunit pseudouridine synthase C [Pantoea
agglomerans 299R]
Length = 318
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 ILFEDESLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGNWPSHLKVVQAPLLKNILQSGERVV--- 207
Query: 326 PRLVSEGKT 334
R+ SEGK
Sbjct: 208 -RVSSEGKA 215
>gi|53804453|ref|YP_113936.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
gi|53758214|gb|AAU92505.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
Length = 316
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 216 W-NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
W +RI+ E +V++KPAG +V GG+ A+R L H++D T
Sbjct: 89 WLENRILHEDEDLLVVNKPAGMAVHGGSGLRFGVIEGLRAAREDARF--LELVHRLDRDT 146
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPI 322
GC+++A+ + H + R + V K YLAL APL ++ R +
Sbjct: 147 SGCLLIAKRRSALRQLHEQFRGEGVDKTYLALFSGVWARRRQVVDAPLLKNVLQSGERMV 206
Query: 323 NIAPRLVSEGKT 334
I+ SEGK
Sbjct: 207 KIS----SEGKA 214
>gi|403235593|ref|ZP_10914179.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus sp. 10403023]
Length = 224
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 221 IAVTESHVVL-DKPAGTSVGGTTDNIEESCATFAS------RALGLTTPLRTTHQIDNCT 273
I + H+++ +KP+G T N E T A+ +A G+ T +R H++D T
Sbjct: 87 ILFEDDHLLIANKPSGME---THPNEENQLGTLANAVAYHFQANGVYTKVRHIHRLDRDT 143
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
G V+ A+ + +I R++ ++++K+ Y+AL GI+ P+
Sbjct: 144 TGAVIFAKHKLASAILDRRLEKREIKRTYVALVH-----GIIKQKKEPL 187
>gi|171463176|ref|YP_001797289.1| pseudouridine synthase Rlu family protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192714|gb|ACB43675.1| pseudouridine synthase, RluA family [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 335
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 153 QMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIV---EAGTYLRVHVHPKRFP 209
++RV K+ +P+ I+G VR RI Q+ A T R H + + P
Sbjct: 58 EVRVNKKRAEPTT----RLIEGDVVR--LPPVRIAEPAQMAAVNSAQTKFRAHGYSDKMP 111
Query: 210 RCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRT 265
++ E+ ++++KPAG +V G + A L +T P L
Sbjct: 112 ILFE----------DEALLIVNKPAGLAVHGGS-----GIALGVIETLRITRPELKFLEL 156
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR 320
H++D T G + LA+ + HR+IRE + K Y L + G T ++
Sbjct: 157 VHRLDRDTSGVLFLAKKRSALVELHRQIREDQADKRYYLLAHGEIVQGAQTMQLK 211
>gi|416239561|ref|ZP_11632034.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC1]
gi|326567130|gb|EGE17252.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC1]
Length = 382
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RII + +VL+KP G +V G + ES + L + L H+ID T G
Sbjct: 143 ERIIFEDDGLIVLNKPHGMAVHGGSG---ESFGIIEAMRLAMGKKYLELIHRIDKDTSGL 199
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + I + R+K ++K YL L
Sbjct: 200 LLIAKKRSTLKILQEQFRKKTIQKRYLCLVMG 231
>gi|296113828|ref|YP_003627766.1| RluA family pseudouridine synthase [Moraxella catarrhalis RH4]
gi|416156564|ref|ZP_11604603.1| RluA family pseudouridine synthase [Moraxella catarrhalis 101P30B1]
gi|416216101|ref|ZP_11623502.1| RluA family pseudouridine synthase [Moraxella catarrhalis 7169]
gi|416227999|ref|ZP_11627351.1| RluA family pseudouridine synthase [Moraxella catarrhalis 46P47B1]
gi|416233969|ref|ZP_11629567.1| RluA family pseudouridine synthase [Moraxella catarrhalis 12P80B1]
gi|416245602|ref|ZP_11634585.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC8]
gi|416249294|ref|ZP_11636470.1| RluA family pseudouridine synthase [Moraxella catarrhalis CO72]
gi|416256232|ref|ZP_11639599.1| RluA family pseudouridine synthase [Moraxella catarrhalis O35E]
gi|421780625|ref|ZP_16217113.1| RluA family pseudouridine synthase [Moraxella catarrhalis RH4]
gi|295921522|gb|ADG61873.1| RluA family pseudouridine synthase [Moraxella catarrhalis BBH18]
gi|326562171|gb|EGE12499.1| RluA family pseudouridine synthase [Moraxella catarrhalis 7169]
gi|326564465|gb|EGE14691.1| RluA family pseudouridine synthase [Moraxella catarrhalis 46P47B1]
gi|326565646|gb|EGE15809.1| RluA family pseudouridine synthase [Moraxella catarrhalis 12P80B1]
gi|326572296|gb|EGE22291.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC8]
gi|326574310|gb|EGE24257.1| RluA family pseudouridine synthase [Moraxella catarrhalis O35E]
gi|326574892|gb|EGE24822.1| RluA family pseudouridine synthase [Moraxella catarrhalis 101P30B1]
gi|326576218|gb|EGE26133.1| RluA family pseudouridine synthase [Moraxella catarrhalis CO72]
gi|407812313|gb|EKF83099.1| RluA family pseudouridine synthase [Moraxella catarrhalis RH4]
Length = 382
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RII + +VL+KP G +V G + ES + L + L H+ID T G
Sbjct: 143 ERIIFEDDGLIVLNKPHGMAVHGGSG---ESFGIIEAMRLAMGKKYLELIHRIDKDTSGL 199
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + I + R+K ++K YL L
Sbjct: 200 LLIAKKRSTLKILQEQFRKKTIQKRYLCLVMG 231
>gi|401676251|ref|ZP_10808237.1| ribosomal large subunit pseudouridine synthase C [Enterobacter sp.
SST3]
gi|400216737|gb|EJO47637.1| ribosomal large subunit pseudouridine synthase C [Enterobacter sp.
SST3]
Length = 306
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 74 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 129
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++REK ++K YLAL APL
Sbjct: 130 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKN 189
Query: 314 IMTHYMRPINIAPRLVSEGK 333
I+ R + ++ EGK
Sbjct: 190 ILQSGERIVRVS----QEGK 205
>gi|295688944|ref|YP_003592637.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430847|gb|ADG10019.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
Length = 271
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 217 NSRIIAVTESHVVLDKPAG-TSVGG--TTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
S ++ E+ +VLDKPAG +S GG +++ FA G P R H++D T
Sbjct: 33 QSWVLYEDEAIIVLDKPAGLSSQGGRIKAHTLDDLLWAFAKP--GKARP-RLIHRLDRDT 89
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGIM 315
G ++ A+T+ + + K+ +K YLA+ AP P G M
Sbjct: 90 SGVILTAKTKPGAAFLGEAMMAKRFRKSYLAIVAPGAPEPKGGM 133
>gi|222874381|gb|EEF11512.1| predicted protein [Populus trichocarpa]
Length = 304
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RII E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 140 RIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 198
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE K+ K Y A
Sbjct: 199 LAKKRSALVNLHEQIRENKMDKRYYA 224
>gi|212559157|gb|ACJ31611.1| Pseudouridine synthase RluA-like protein [Shewanella piezotolerans
WP3]
Length = 237
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+ S A L L L + H++D T G ++LA++ + F R+ E KV+K YLAL
Sbjct: 39 DGSAGVVAQAELDLGIKLYSVHRLDTMTSGLLILAKSSAVAAEFTRQFSEHKVQKYYLAL 98
Query: 306 TTA 308
Sbjct: 99 AKG 101
>gi|148251982|ref|YP_001236567.1| RNA pseudouridine synthase [Bradyrhizobium sp. BTAi1]
gi|146404155|gb|ABQ32661.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. BTAi1]
Length = 295
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+R++ +V+DKPAG V A+F + GL P H++D T GC+
Sbjct: 3 ARVLHRDGLMLVIDKPAGIPVHKGPKGGANLEASFDALRFGLPRPPVLAHRLDKETSGCL 62
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
VL R ++ + + K+ K Y A+
Sbjct: 63 VLGRHRKATASLGLLFKHGKISKTYWAV 90
>gi|345870201|ref|ZP_08822155.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
gi|343922143|gb|EGV32848.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
Length = 308
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN----IEESCATFASRALGL 259
HP + PR ++ E +V+DKP+G +V G + IE R L L
Sbjct: 66 HPGQAPRSQMERIERGVLFEDERLLVIDKPSGLAVHGGSGLSYGLIESLRQARPGRELEL 125
Query: 260 TTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
H++D T GC+V+++ + H+ IRE + K Y AL L
Sbjct: 126 V------HRLDRETSGCLVISKRRSALRELHQLIRENGMTKRYRALFVGDL 170
>gi|284007272|emb|CBA72588.1| 23S rRNA pseudouridylate synthase C [Arsenophonus nasoniae]
Length = 315
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+G +V G S F AL + P L H++D T G +++A+
Sbjct: 102 LVLNKPSGMAVHGG------SGVNFGIIEALRILRPEARFLELVHRLDRETSGVLLIAKK 155
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ + H+++R K+++K YLAL P
Sbjct: 156 RSALRVLHQQLRLKQMQKQYLALVKGQWP 184
>gi|449471578|ref|XP_004153349.1| PREDICTED: ribosomal large subunit pseudouridine synthase C-like
[Cucumis sativus]
Length = 306
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 74 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 129
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 130 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 173
>gi|399991417|ref|YP_006571657.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398655972|gb|AFO89938.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 343
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I ++ +VL+KPAG +V G + + A+ R H++D T G +VL
Sbjct: 89 VIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAALQFDAEEKPRLVHRLDKDTSGVLVL 148
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
ART+ R + +K+Y AL G+ T Y+ I
Sbjct: 149 ARTRLAAQSLTAAFRHRATRKIYWALV-----AGVPTPYLGEIK 187
>gi|323499352|ref|ZP_08104328.1| ribosomal large subunit pseudouridine synthase C [Vibrio
sinaloensis DSM 21326]
gi|323315537|gb|EGA68572.1| ribosomal large subunit pseudouridine synthase C [Vibrio
sinaloensis DSM 21326]
Length = 314
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II E ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 96 IIYEDEHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK VKK Y AL
Sbjct: 154 VAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|126728208|ref|ZP_01744024.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
gi|126711173|gb|EBA10223.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
Length = 347
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G + G + + G+ R H++D T G ++LART+
Sbjct: 97 DDHIIALNKPPGLATQGGSGQTRHVDGLSEALTFGMDEKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
IR ++ +K+Y AL G+ T Y+ I
Sbjct: 157 AVAKALTEAIRHREARKIYWALV-----AGVPTPYLGEIK 191
>gi|384263153|ref|YP_005418341.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
gi|378404255|emb|CCG09371.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
Length = 372
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+K G +V G T A + A G P R H++D T G +VLARTQ
Sbjct: 125 IVLNKAPGLAVQGGTGTDHHLDAMLDALAGGGERP-RLVHRLDKDTSGVLVLARTQAAAR 183
Query: 288 IFHRKIREKKVKKLYLALTTA--PLPVGIM 315
R + K+Y AL PL G M
Sbjct: 184 FLTAAFRARDTLKVYWALVVGRPPLEQGTM 213
>gi|88859600|ref|ZP_01134240.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
gi|88818617|gb|EAR28432.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
Length = 320
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPAG +V G + + E+ T + T L H++D T GC+++++ +
Sbjct: 103 IVINKPAGMAVHGGSGLSYGLIEAMRTLRPQE----TALELVHRLDRDTSGCLLISKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
H ++REK ++K Y AL +
Sbjct: 159 VLKSLHEQLREKTMQKNYWALVSG 182
>gi|332665601|ref|YP_004448389.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
gi|332334415|gb|AEE51516.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
Length = 224
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 221 IAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
+A T + + ++KP G SV G D IE+ + SR T P + H++D T G
Sbjct: 10 LAETGAWIAVNKPFGFSVEKTLGADDTIEDQVLAYLSRQT--TMPFVGIVHRLDRVTSGI 67
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYM 319
++LA+ + + + ++ VKK+Y A+ +P ++ ++
Sbjct: 68 LLLAKKKSALRKLNEQFSQRSVKKMYWAMVEGIPQVPEATLSQWL 112
>gi|75674513|ref|YP_316934.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74419383|gb|ABA03582.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
Length = 264
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
+R++ +V+DKPAG +V GG N+E A+F + GL P H++D
Sbjct: 21 QARVLHRDGLMLVIDKPAGIAVHRGPKGGA--NLE---ASFDALRFGLPRPPVLAHRLDR 75
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GC+VL R ++ + + K+ K Y A+
Sbjct: 76 DTSGCLVLGRHRKATASLGLLFKHGKISKTYWAV 109
>gi|209883418|ref|YP_002287275.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|209871614|gb|ACI91410.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
Length = 244
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHRGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIGKTYWAVVEG 103
>gi|392944825|ref|ZP_10310467.1| 23S RNA-specific pseudouridylate synthase [Frankia sp. QA3]
gi|392288119|gb|EIV94143.1| 23S RNA-specific pseudouridylate synthase [Frankia sp. QA3]
Length = 273
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKPAG SV G E A L H+ID T G V+ A+ +
Sbjct: 20 LVLDKPAGISVMG-----ERHDTDLVRLAADAGEELFPVHRIDKVTSGVVLFAKELRFHG 74
Query: 288 IFHRKIREKKVKKLYLALT 306
R+ + + V K YLALT
Sbjct: 75 DLTRQFQRRTVGKRYLALT 93
>gi|334122475|ref|ZP_08496513.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
hormaechei ATCC 49162]
gi|419957492|ref|ZP_14473558.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae GS1]
gi|333392082|gb|EGK63189.1| ribosomal large subunit pseudouridine synthase C [Enterobacter
hormaechei ATCC 49162]
gi|388607650|gb|EIM36854.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae GS1]
Length = 315
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|296102896|ref|YP_003613042.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057355|gb|ADF62093.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 306
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 74 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 129
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++REK ++K YLAL APL
Sbjct: 130 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKN 189
Query: 314 IMTHYMRPINIAPRLVSEGK 333
I+ R + ++ EGK
Sbjct: 190 ILQSGERIVRVS----QEGK 205
>gi|422440262|ref|ZP_16517076.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA3]
gi|422471386|ref|ZP_16547886.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA2]
gi|422572440|ref|ZP_16648010.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL044PA1]
gi|313837447|gb|EFS75161.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA2]
gi|314929343|gb|EFS93174.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL044PA1]
gi|314971654|gb|EFT15752.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA3]
Length = 306
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RI+ VV+DKPAG S+G ++ E + A FA GL ++D
Sbjct: 81 RIVHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGLLERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRAVDKVYLALVQG 176
>gi|209963797|ref|YP_002296712.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957263|gb|ACI97899.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 242
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ ++LDKP G V T +E A P R H++D T GC
Sbjct: 9 RARVLHRDADVLILDKPHGLPVHYGTKTVEHLEQYLPWIAFEREEPPRLAHRLDKDTSGC 68
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+VLAR E + R V K Y A+
Sbjct: 69 LVLARDAEVAARLGRLFLHGHVGKTYWAV 97
>gi|400755741|ref|YP_006564109.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
gi|398654894|gb|AFO88864.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
Length = 348
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I ++ +VL+KPAG +V G + + A+ R H++D T G +VL
Sbjct: 94 VIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAALQFDAEEKPRLVHRLDKDTSGVLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
ART+ R + +K+Y AL G+ T Y+ I
Sbjct: 154 ARTRLAAQSLTAAFRHRATRKIYWALV-----AGVPTPYLGEIK 192
>gi|421543602|ref|ZP_15989693.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|421545661|ref|ZP_15991721.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|421547730|ref|ZP_15993762.1| pseudouridine synthase [Neisseria meningitidis NM2781]
gi|421551941|ref|ZP_15997922.1| pseudouridine synthase [Neisseria meningitidis NM576]
gi|421560352|ref|ZP_16006211.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM2657]
gi|433468431|ref|ZP_20425868.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
98080]
gi|254670429|emb|CBA06026.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha153]
gi|402325889|gb|EJU61296.1| pseudouridine synthase [Neisseria meningitidis NM183]
gi|402326444|gb|EJU61846.1| pseudouridine synthase [Neisseria meningitidis NM140]
gi|402327750|gb|EJU63137.1| pseudouridine synthase [Neisseria meningitidis NM2781]
gi|402332857|gb|EJU68175.1| pseudouridine synthase [Neisseria meningitidis NM576]
gi|402340525|gb|EJU75725.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
NM2657]
gi|432206517|gb|ELK62524.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
98080]
Length = 330
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|384179325|ref|YP_005565087.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324325409|gb|ADY20669.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 307
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|395236404|ref|ZP_10414599.1| 23S rRNA/tRNA pseudouridine synthase A [Enterobacter sp. Ag1]
gi|394728831|gb|EJF28866.1| 23S rRNA/tRNA pseudouridine synthase A [Enterobacter sp. Ag1]
Length = 219
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G D ++S T R L + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLDEHKDSVMTRIQRDFPLA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK Y+A
Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVA 98
>gi|85713493|ref|ZP_01044483.1| pseudouridine synthase [Nitrobacter sp. Nb-311A]
gi|85699397|gb|EAQ37264.1| pseudouridine synthase [Nitrobacter sp. Nb-311A]
Length = 298
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
+R++ +V+DKPAG +V GG N+E A+F + GL P H++D
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHRGPKGGA--NLE---ASFDALRFGLPRPPVLAHRLDR 66
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GC+VL R ++ + + K+ K Y A+
Sbjct: 67 DTSGCLVLGRHRKATASLGLLFKHGKISKTYWAV 100
>gi|47566178|ref|ZP_00237206.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus G9241]
gi|47556731|gb|EAL15062.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus G9241]
Length = 307
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPSEKGGMGTLANL----VAFHYQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYVALVEGKV 180
>gi|444918132|ref|ZP_21238211.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444710246|gb|ELW51233.1| ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 331
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P ++ DW +VLDKPAG + T + + + LG +
Sbjct: 80 PTEVPVVFEDDWL----------LVLDKPAGLPLHPTARYHKGTLVSLLRERLGHAS-AE 128
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G VV RT E C + R ++V K YLA+
Sbjct: 129 PAHRLDRETSGLVVCGRTTEACRVLGRLFISREVHKEYLAI 169
>gi|254805759|ref|YP_003083980.1| ribosomal large subunit pseudouridine synthase [Neisseria
meningitidis alpha14]
gi|254669301|emb|CBA08284.1| ribosomal large subunit pseudouridine synthase [Neisseria
meningitidis alpha14]
Length = 330
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|261339387|ref|ZP_05967245.1| ribosomal large subunit pseudouridine synthase [Enterobacter
cancerogenus ATCC 35316]
gi|288318188|gb|EFC57126.1| ribosomal large subunit pseudouridine synthase [Enterobacter
cancerogenus ATCC 35316]
Length = 315
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|337739499|ref|YP_004631227.1| RNA pseudouridine synthase [Oligotropha carboxidovorans OM5]
gi|386028517|ref|YP_005949292.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336093585|gb|AEI01411.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336097163|gb|AEI04986.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM5]
Length = 263
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 31 QARVLHRDGLMLVIDKPAGIAVHRGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 90
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 91 LVLGRHRKATASLGLLFKHGKIGKTYWAVVEG 122
>gi|240949536|ref|ZP_04753876.1| RNA pseudouridine synthase [Actinobacillus minor NM305]
gi|240296109|gb|EER46770.1| RNA pseudouridine synthase [Actinobacillus minor NM305]
Length = 212
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV DN ++ LG+ + H++D T G ++LA T+E
Sbjct: 15 IVINKPEGVSV--HKDNEASGLTERIAQQLGVPQ-IWLVHRLDKATSGLLILALTKEAAV 71
Query: 288 IFHRKIREKKVKKLYLALTT 307
F+ ++ K++K Y AL+T
Sbjct: 72 EFYHLFKQHKIQKTYWALST 91
>gi|421856423|ref|ZP_16288789.1| pseudouridine synthase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|403188121|dbj|GAB74990.1| pseudouridine synthase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 303
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 189 VDQIVEAGTYLRVHVHPKRF-PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEE 247
+D I E H++ RF + + + I+ T+ +V+DKP ++ T ++E
Sbjct: 68 IDSIYEGNQ----HIYYYRFLSKETPVPFEHHILHETDEFLVVDKPHFLTMSPTGQYVQE 123
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+ + G+ T L H++D T G V+ ++ E ++ + E+KV+K Y A+
Sbjct: 124 TLLVRLKKQTGIET-LTPIHRLDRETAGVVLFSKRPETRGLYQKLFAERKVEKTYHAV-- 180
Query: 308 APLPVGIMTHYMRPINIAPRLVSEGKTIFGLALM 341
AP + PIN+ RL +G+ + + ++
Sbjct: 181 APFKPELNF----PINLTLRL-DKGEPFYTMQIV 209
>gi|294085986|ref|YP_003552746.1| pseudouridine synthase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665561|gb|ADE40662.1| pseudouridine synthase, RluA family [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 335
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
++ +I + + L+KP+G +V G T + A+ A LR H+ID T G
Sbjct: 106 FDDMVIGEGKGWLALNKPSGLAVQGGTGTKQHVDGMLAALAARGGDRLRLVHRIDKDTSG 165
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
++LA+T + + ++K YLAL
Sbjct: 166 VLLLAKTLQSARSLTDAFHKHAIEKTYLAL 195
>gi|416159287|ref|ZP_11605752.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis N1568]
gi|433472578|ref|ZP_20429948.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97021]
gi|433481004|ref|ZP_20438276.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2006087]
gi|433483126|ref|ZP_20440364.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2002038]
gi|433485226|ref|ZP_20442432.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97014]
gi|325129115|gb|EGC51964.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis N1568]
gi|432212462|gb|ELK68400.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97021]
gi|432219357|gb|ELK75204.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2006087]
gi|432223572|gb|ELK79352.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
2002038]
gi|432224686|gb|ELK80449.1| pseudouridine synthase, RluA family protein [Neisseria meningitidis
97014]
Length = 330
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVIDKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|159897698|ref|YP_001543945.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
gi|159890737|gb|ABX03817.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
Length = 312
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 218 SRIIAVTESHVVLDKPAG----TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+ I+ E +VL+KPA + T ++E + F G P H++D+ T
Sbjct: 65 ADILFEDEWILVLNKPAAWYSVATPWDTFGHLEGALQRFFLERDGEAVPFHLVHRLDHGT 124
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++++ S F R E +V+K YLAL
Sbjct: 125 SGALIVSKNPSLNSRFQRMFNEGRVQKTYLAL 156
>gi|82752903|ref|XP_727467.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483320|gb|EAA19032.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 588
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP + G D+I S T + L T R Q+D T G +++A+ +
Sbjct: 74 LVVNKPYDIKLEKGKLDDIYPSVETLLRKKRNLNT-FRMCGQLDYATSGLLIIAKDKLSS 132
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIM 315
+I + I K + K+YLA+ LP+ ++
Sbjct: 133 NILNYNIESKNISKIYLAILYGHLPLDVL 161
>gi|401763195|ref|YP_006578202.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174729|gb|AFP69578.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 315
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|344304981|gb|EGW35213.1| DRAP deaminase and pseudouridylate synthase [Spathaspora
passalidarum NRRL Y-27907]
Length = 416
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II VV++KPAG T + S LG T + H++D T G ++L
Sbjct: 111 IIYQDSDLVVVNKPAGIPTHATGSYMYNSVVEILKEQLG-TDSIWPCHRLDKVTSGVLIL 169
Query: 280 ARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVG------------IMTHYMRPINIA 325
A+++E + I+EKK +K YLA P G + Y++P N +
Sbjct: 170 AKSKEATCKMSKLIQEKKTSTEKKYLARVKGKFPEGEYVFNCPVFSVNVNGGYLQPPN-S 228
Query: 326 PRLVSEGKTIF 336
+L + TIF
Sbjct: 229 HQLQANSTTIF 239
>gi|195146688|ref|XP_002014316.1| GL19135 [Drosophila persimilis]
gi|194106269|gb|EDW28312.1| GL19135 [Drosophila persimilis]
Length = 478
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E VV++KPA V + +++ L LRT H++D T G ++
Sbjct: 155 IVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKSHNLKN-LRTIHRLDRLTSGLLIF 213
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
RT + ++IR ++V+K Y+ P GI+
Sbjct: 214 GRTSKKARELEQQIRNRQVQKEYICRVEGRFPDGII 249
>gi|397170415|ref|ZP_10493831.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
gi|396088082|gb|EJI85676.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
Length = 317
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
D I+ + +VL+KP+G +V G + + A RAL L H++D T
Sbjct: 90 DLEQHILYEDKDLIVLNKPSGMAVHGGSGL--QFGVIEALRALRPDAKHLELVHRLDRDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC+++A+ + + H ++R K V+K Y AL
Sbjct: 148 SGCLLIAKKRSVLTHLHEQLRNKTVEKKYWALVAG 182
>gi|387773752|ref|ZP_10129039.1| rRNA pseudouridylate synthase C [Haemophilus parahaemolyticus
HK385]
gi|386903798|gb|EIJ68601.1| rRNA pseudouridylate synthase C [Haemophilus parahaemolyticus
HK385]
Length = 320
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDN 271
+ S+I+ E +V++KP+G +V G + I E+ +A L H+ID
Sbjct: 93 ELESQILYEDEVMLVINKPSGIAVHGGSGLSFGIIEALRALRPQA----RFLELVHRIDR 148
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T G +++A+ + H ++REK V+K YLAL
Sbjct: 149 DTSGILLVAKKRSALRNLHEQLREKVVQKDYLAL 182
>gi|126737039|ref|ZP_01752774.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
gi|126721624|gb|EBA18327.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
Length = 348
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I + +VL+KPAG +V G + + L R H++D T G +VL
Sbjct: 94 VIYKDDDVIVLNKPAGLAVQGGSGTTRHVDGLSEALRLEAEEKPRLVHRLDKDTSGVLVL 153
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
AR ++ R K +K+Y AL G+ T Y+ I
Sbjct: 154 ARNRKAAQALTAAFRHKNTRKIYWALV-----AGVPTPYLGEIK 192
>gi|421075679|ref|ZP_15536686.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392526238|gb|EIW49357.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 301
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL---GLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KPA V T + + A + + L G+ T +R H++D T GCV+ A+
Sbjct: 90 LVVNKPAYQLVHPTGQTTKGTLANYLAYHLQQQGVITTIRPVHRLDRETSGCVIFAKDDR 149
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
I ++++++ +K++Y AL
Sbjct: 150 SQFILEQQLKDRTLKRVYWAL 170
>gi|85713201|ref|ZP_01044230.1| Predicted pseudouridylate synthase, Rlu family protein [Idiomarina
baltica OS145]
gi|85692974|gb|EAQ30943.1| Predicted pseudouridylate synthase, Rlu family protein [Idiomarina
baltica OS145]
Length = 315
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 187 THVDQIVEAGTYLR---VHVHPK------RFPRCYDIDWNSRIIAVTESHVVLDKPAGTS 237
T D ++AG +R V V PK + + +++ I+ ++ ++++KP+G +
Sbjct: 54 TKPDYKIKAGDAIRIPPVKVSPKPELPSPKLAKVAELE--QAIVYEDDAFMIVNKPSGLA 111
Query: 238 V-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296
V GG+ N A R L H++D T G +++A+ + + H ++R+K
Sbjct: 112 VHGGSGLNFGLIEGLRALRPQ--DNALELVHRLDRDTSGLIMIAKKRSVLKVLHAQLRDK 169
Query: 297 KVKKLYLAL 305
++ K YLAL
Sbjct: 170 EMNKQYLAL 178
>gi|395204346|ref|ZP_10395286.1| pseudouridine synthase, RluA family [Propionibacterium humerusii
P08]
gi|328907008|gb|EGG26774.1| pseudouridine synthase, RluA family [Propionibacterium humerusii
P08]
Length = 227
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RI+ VV+DKPAG S+G ++ E + A FA GL ++D
Sbjct: 2 RIVHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGLLERQGIVQRLDVG 61
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 62 TSGLMVVAKSEHAYTLLKQAFRDRAVDKVYLALVQG 97
>gi|386389822|ref|ZP_10074624.1| rRNA pseudouridylate synthase C [Haemophilus paraphrohaemolyticus
HK411]
gi|385694571|gb|EIG25165.1| rRNA pseudouridylate synthase C [Haemophilus paraphrohaemolyticus
HK411]
Length = 320
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ S+I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELESQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRNLHEQLREKVVQKDYLAL 182
>gi|68067749|ref|XP_675809.1| ribosomal large subunit pseudouridylate synthase, [Plasmodium
berghei strain ANKA]
gi|56495204|emb|CAI05271.1| ribosomal large subunit pseudouridylate synthase, putative
[Plasmodium berghei]
Length = 523
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP + G D+I S T + L T R Q+D T G +++A+ +
Sbjct: 76 LVVNKPYDIKLEKGKLDDIYPSVETLLRKKRNLNT-FRMCGQLDYATSGLLIIAKDKLSS 134
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIM 315
+I + I K + K+YLA+ LP+ ++
Sbjct: 135 NILNYNIESKNISKIYLAILYGHLPLDVL 163
>gi|323144879|ref|ZP_08079445.1| rRNA pseudouridylate synthase C [Succinatimonas hippei YIT 12066]
gi|322415346|gb|EFY06114.1| rRNA pseudouridylate synthase [Succinatimonas hippei YIT 12066]
Length = 335
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLT-TPLRTTHQIDNCT 273
+ RI E+ +V+DKPAG + G + IE A RAL + L H++D T
Sbjct: 109 NLKDRICFENEALIVVDKPAGIAAHGGS-GIEFGLIE-ALRALRPEFSFLELAHRLDRET 166
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
GC+++A+ + H + R + +KK YL L
Sbjct: 167 SGCLIVAKRRSALRNLHEQFRSRVIKKRYLTLV 199
>gi|338530293|ref|YP_004663627.1| RNA pseudouridine synthase family protein [Myxococcus fulvus HW-1]
gi|337256389|gb|AEI62549.1| RNA pseudouridine synthase family protein [Myxococcus fulvus HW-1]
Length = 330
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTP 262
P P + DW +VLDKPAG + T + + T G P
Sbjct: 85 PTELPVVFQDDWL----------LVLDKPAGLPIHPTARYHKGTLVTLLRERFGERFAEP 134
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G VV RT E C + R ++V K YLAL
Sbjct: 135 ---AHRLDRETSGLVVCGRTTESCRVLGRLFVSREVHKEYLAL 174
>gi|393762070|ref|ZP_10350699.1| 23S rRNA pseudouridylate synthase [Alishewanella agri BL06]
gi|392607102|gb|EIW89984.1| 23S rRNA pseudouridylate synthase [Alishewanella agri BL06]
Length = 317
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
D I+ + +VL+KP+G +V G + + A RAL L H++D T
Sbjct: 90 DLEQHILYEDKDLIVLNKPSGMAVHGGSGL--QFGVIEALRALRPDAKHLELVHRLDRDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC+++A+ + + H ++R K V+K Y AL
Sbjct: 148 SGCLLIAKKRSVLTHLHEQLRNKTVEKKYWALVAG 182
>gi|254449547|ref|ZP_05062984.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
gi|198263953|gb|EDY88223.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 347
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG G + + + G R H++D T G +VLART+
Sbjct: 100 IVLNKPAGLPTQGGSKQLRHVDGMAEALRFGYDERPRLVHRLDKDTSGVLVLARTRMAAK 159
Query: 288 IFHRKIREKKVKKLYLALTTA-PLP 311
R + +K+Y AL P+P
Sbjct: 160 SLTEAFRHRNTEKIYWALVAGVPIP 184
>gi|375111674|ref|ZP_09757878.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
gi|374568310|gb|EHR39489.1| 23S rRNA pseudouridylate synthase [Alishewanella jeotgali KCTC
22429]
Length = 317
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCT 273
D I+ + +VL+KP+G +V G + + A RAL L H++D T
Sbjct: 90 DLEQHILYEDKDLIVLNKPSGMAVHGGSGL--QFGVIEALRALRPDAKHLELVHRLDRDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC+++A+ + + H ++R K V+K Y AL
Sbjct: 148 SGCLLIAKKRSVLTHLHEQLRNKTVEKKYWALVAG 182
>gi|304373162|ref|YP_003856371.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis HUB-1]
gi|304309353|gb|ADM21833.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
hyorhinis HUB-1]
Length = 297
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 192 IVEAGTYLRVHVHPKR---FPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
I++ G+ + VH K + DI+ +I+ E+ +V+DKP V N E +
Sbjct: 51 ILKQGSQIEVHYQEKEQNINAKAQDIEL--KIVFEDENVIVVDKPTNMVVHPAPGNYENT 108
Query: 249 CAT-----FASRALGLTTPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKL 301
FA + + LR H++D T G +++A+ + + ++++E+K+K+
Sbjct: 109 LVNALVYKFAQLS-NVNGSLRPGIVHRLDKDTSGLMLVAKNDKMHNFLAQQLKERKIKRK 167
Query: 302 YLALTTAPLPVGIMTHYMRPI 322
Y A+ L I +H PI
Sbjct: 168 YYAIIEGQLENQI-SHINLPI 187
>gi|410622351|ref|ZP_11333188.1| tRNA pseudouridine32 synthase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158096|dbj|GAC28562.1| tRNA pseudouridine32 synthase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 248
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + +VL+KP+G + + E+ + +L L H++D T GC++L
Sbjct: 4 LVLDNQDFMVLNKPSGMPMHDS-----ENAIIRVAESLFNYQKLWLIHRLDTDTSGCILL 58
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A+T++ S ++ EK V+K Y+A+
Sbjct: 59 AKTKQAASELSKQFAEKNVQKYYIAV 84
>gi|406965558|gb|EKD91180.1| Pseudouridine synthase [uncultured bacterium]
Length = 264
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNI---EESCATFASRALGLTTPLR-TTHQIDNC 272
N II + VV+DKP SV T + + EE+ A+ ++ LG+ H++D
Sbjct: 3 NLSIIFEDDFLVVIDKPPNVSV--TDEGVKAGEETIASILAKELGIKAERGGIVHRLDKA 60
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
T G ++ A+T E + + + +KK YLAL + G
Sbjct: 61 TSGLLLAAKTNEVAQKLKDQFKGRTIKKTYLALVHGIVQDG 101
>gi|365855074|ref|ZP_09395131.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
gi|363719513|gb|EHM02820.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
Length = 326
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ES + L+KP G V G + + + G R H++D T G ++L
Sbjct: 93 ILFQDESIIALNKPHGLPVQGGPNIKKHLDGMLDALRFGHEERPRLVHRLDRDTSGVILL 152
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
AR Q S + R + KK Y A+
Sbjct: 153 ARDQRAASFLAKAFRSRDAKKTYWAI 178
>gi|299133083|ref|ZP_07026278.1| pseudouridine synthase [Afipia sp. 1NLS2]
gi|298593220|gb|EFI53420.1| pseudouridine synthase [Afipia sp. 1NLS2]
Length = 244
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIGKTYWAVVEG 103
>gi|257439373|ref|ZP_05615128.1| ribosomal large subunit pseudouridine synthase C [Faecalibacterium
prausnitzii A2-165]
gi|257198248|gb|EEU96532.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
A2-165]
Length = 316
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
+V++KPAG +V G D+ T +RAL L TP H++D T G
Sbjct: 95 LVVNKPAGLAVDGPEDD------TLLNRALLYLNQQGEYKENDLYTPA-LCHRLDTGTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
V++A+T E +F I+ ++VKK YL +T
Sbjct: 148 LVIIAKTPEAEQLFLEVIKNREVKKTYLCVT 178
>gi|158426220|ref|YP_001527512.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158333109|dbj|BAF90594.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 319
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VLDKPAG V E GL H++D T GC+VL R + +
Sbjct: 94 LVLDKPAGLPVHPGPKGGETLHDHLNGLRFGLPRAPELAHRLDKDTSGCLVLGRHGKALA 153
Query: 288 IFHRKIREKKVKKLYLALT 306
+ +R E + K Y+A+T
Sbjct: 154 LLNRLFAEGQADKTYVAVT 172
>gi|440751287|ref|ZP_20930521.1| tRNA pseudouridine synthase [Mariniradius saccharolyticus AK6]
gi|436480151|gb|ELP36408.1| tRNA pseudouridine synthase [Mariniradius saccharolyticus AK6]
Length = 237
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCV 277
II E+++ ++KP G V T EE A A R L + H+ID T G V
Sbjct: 7 IIFENENYLAINKPVGMLVHRTNIAFEEH-ALIAERILKQQLGFKVFPLHRIDRPTSGIV 65
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIM 315
+ ++ + S + +KVKKLYL + +P GI+
Sbjct: 66 LFGKSSDAASALQPQFTTEKVKKLYLCIVRGHMPTAHGIL 105
>gi|311067404|ref|YP_003972327.1| RNA pseudouridine synthase [Bacillus atrophaeus 1942]
gi|419822611|ref|ZP_14346190.1| putative RNA pseudouridine synthase [Bacillus atrophaeus C89]
gi|310867921|gb|ADP31396.1| putative RNA pseudouridine synthase [Bacillus atrophaeus 1942]
gi|388473325|gb|EIM10069.1| putative RNA pseudouridine synthase [Bacillus atrophaeus C89]
Length = 303
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 221 IAVTESH-VVLDKPAGTSVGGTTDNIEESCATFAS------RALGLTTPLRTTHQIDNCT 273
I +SH ++++KPAG T N E T A+ +A G T +R H++D T
Sbjct: 85 ILFEDSHMLIVNKPAGMP---THPNEEGQTGTLANLIAYHLQANGEQTKVRHVHRLDLDT 141
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
G VV A+ + +I +++ +K++K+ Y+AL L
Sbjct: 142 SGAVVFAKHRLAHAILDQQLEKKELKRTYIALAEGKL 178
>gi|256822394|ref|YP_003146357.1| RluA family pseudouridine synthase [Kangiella koreensis DSM 16069]
gi|256795933|gb|ACV26589.1| pseudouridine synthase, RluA family [Kangiella koreensis DSM 16069]
Length = 316
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQI 269
+ S I+ + +VL+KP G +V G S +F A RAL P L H++
Sbjct: 90 ELESAILYEDKRLIVLNKPHGMAVHGG------SGMSFGVIEALRALRPEAPFLELVHRL 143
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
D T GC+++A+ + H ++++K + K Y AL P +
Sbjct: 144 DRDTSGCLLIAKKRSTLRFLHEQLQKKLMSKQYWALVEGKWPAKL 188
>gi|149372343|ref|ZP_01891531.1| Ribosomal large subunit pseudouridine synthase D [unidentified
eubacterium SCB49]
gi|149354733|gb|EDM43296.1| Ribosomal large subunit pseudouridine synthase D [unidentified
eubacterium SCB49]
Length = 300
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 225 ESHV-VLDKPAGTSVGG----TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++H+ ++ KPAG V G T +N S +++ L PL H++D T GC+++
Sbjct: 93 DNHLAIIHKPAGVEVSGNKKYTIENALPSLLKKSNQKDALDRPL-PAHRLDYPTSGCLLI 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT 306
+T E HR ++++ K Y+A+T
Sbjct: 152 GKTSETLQALHRMFEKREISKKYIAVT 178
>gi|400406173|ref|YP_006588921.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
gi|400364426|gb|AFP85493.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Heteropsylla cubana]
Length = 316
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 204 HPKRFPRCYDID----WNSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRA 256
H K+ P ++ N+ +I + ++L+K G +V G + + E T
Sbjct: 75 HEKKIPFSVKLNKISALNNSVIYEDDYILILNKLTGIAVHGGSGLHFGVIEGLRTLRPH- 133
Query: 257 LGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
T L H++D T G +++A+ + + H+++R+K++KK Y+AL P
Sbjct: 134 ---TNFLELVHRLDKDTSGVLLIAKKRSALHLLHKQLRDKEMKKDYVALVRGQWP 185
>gi|350531917|ref|ZP_08910858.1| ribosomal large subunit pseudouridine synthase C [Vibrio
rotiferianus DAT722]
Length = 314
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCT 273
+II + ++L+KP+GT+V G + A AL P L H+ID T
Sbjct: 94 DKIIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDT 148
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +++A+ + + REK VKK Y AL
Sbjct: 149 SGILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|330814173|ref|YP_004358412.1| crcB-like protein [Candidatus Pelagibacter sp. IMCC9063]
gi|327487268|gb|AEA81673.1| crcB-like protein [Candidatus Pelagibacter sp. IMCC9063]
Length = 297
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+ II +++L+KP+G SV T N+ + F+ H+ID T
Sbjct: 91 NNIIFENHDYLILNKPSGISVQSGTKSPKNLIDILNKFSE-----DKKFYLVHRIDKETS 145
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP--VGIMTH 317
G +V A + + + R K+VKK YLA+ +P G + H
Sbjct: 146 GIIVFACNRLFAQTLSEQFRNKEVKKSYLAILYGSIPRNEGTLDH 190
>gi|187931011|ref|YP_001890995.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. mediasiatica FSC147]
gi|187711920|gb|ACD30217.1| ribosomal large subunit pseudouridine synthase C [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 309
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRT---THQIDNC 272
RI+ + ++++DKP+G +V GG+ N + R L +R H++D
Sbjct: 87 EQRILYENDDYIIVDKPSGMAVHGGSGVN-----SGLVERLRQLRPKVRRLDLVHRLDKE 141
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
T GCV+LA+ F +++KV K+Y ++
Sbjct: 142 TSGCVLLAKKHSSLVYFFDIFKQRKVDKIYYSIV 175
>gi|359435567|ref|ZP_09225762.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
gi|357917792|dbj|GAA62011.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
Length = 226
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESH---VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
S+I+ V +H +L+KPAG + + E+ L+ L T H++D T
Sbjct: 6 SKILKVVYTHNDFYILEKPAGLNF-----HSEDGPGFVVLAEQQLSQKLYTVHRLDKVTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G ++LAR + + F E + K YLA++ A
Sbjct: 61 GLIILARNKAAAASFTVMFTEHAIAKFYLAISDA 94
>gi|419954616|ref|ZP_14470752.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
TS44]
gi|387968480|gb|EIK52769.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
TS44]
Length = 294
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
+DQ G LR+H + P + + RI+ V E VV DKP +V + + E+
Sbjct: 56 LDQPYRVG--LRIHYF-REVPHETPVPFEERILHVDEHLVVADKPHFLAVMPAGEYVNET 112
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+ LG L H+ID T G V+ + ++ + RE+++ K Y A+ A
Sbjct: 113 LLARLCQRLG-NADLVPIHRIDRLTAGLVLFSANRDSRGAYQALFRERQIAKRYEAICPA 171
>gi|397170381|ref|ZP_10493797.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
gi|396088048|gb|EJI85642.1| 23S rRNA pseudouridylate synthase [Alishewanella aestuarii B11]
Length = 238
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A T+ VL+K AG S + E+ A L L H++D T G ++
Sbjct: 6 QIVAQTDDFYVLNKAAGVSF-----HSEQGPGLVALAEQQLAQKLYPVHRLDKVTSGLLL 60
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
LAR + R +++V+K YLAL+ A
Sbjct: 61 LARRPGVAAELTRLFAKRQVQKCYLALSAA 90
>gi|332534997|ref|ZP_08410813.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035564|gb|EGI72057.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 226
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESH---VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
S+I+ V +H +L+KPAG + + EE L+ L H++D T
Sbjct: 6 SKILKVVYTHNDFYILEKPAGLNF-----HSEEGPGFVVLAEQQLSQKLYAVHRLDKVTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G ++LAR + + F E + K YLA++ A
Sbjct: 61 GLIILARNKAAAATFTVMFTEHAIAKFYLAISDA 94
>gi|383762841|ref|YP_005441823.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383109|dbj|BAL99925.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 296
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL 263
HP+RF D W +IA + ++KPAG S A+ G PL
Sbjct: 78 HPQRF----DPTW---LIADEGDLLAVNKPAGLLSEPRRGLDRPSLLQLATAHFG---PL 127
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
H++D T G V+L R E + R +E V K Y+A+ AP
Sbjct: 128 TLAHRLDRDTSGLVLLTRGGEVNVLLARAFQEGLVHKEYIAVVAAP 173
>gi|417840864|ref|ZP_12486972.1| putative pseudouridine synthase, RluA-like protein [Haemophilus
haemolyticus M19501]
gi|341950675|gb|EGT77262.1| putative pseudouridine synthase, RluA-like protein [Haemophilus
haemolyticus M19501]
Length = 224
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQAEQGLTELVAKQLNVPQ-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL++
Sbjct: 70 EFSRLFSEHKIHKTYLALSS 89
>gi|416891724|ref|ZP_11923271.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347815272|gb|EGY31912.1| RluA protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 238
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G SV D+ + ++ LG+ + H++D T G ++LA ++
Sbjct: 13 IVINKPNGISV--HKDDADVGLTRLVAQQLGVPQ-VWLVHRLDKVTSGLLILALNEKAAV 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
RK E +++K YLAL+T
Sbjct: 70 TLSRKFAEHQIQKTYLALST 89
>gi|192288639|ref|YP_001989244.1| pseudouridine synthase [Rhodopseudomonas palustris TIE-1]
gi|192282388|gb|ACE98768.1| pseudouridine synthase [Rhodopseudomonas palustris TIE-1]
Length = 322
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 204 HPKRF--PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
HP +F P + +R++ +V+DKP G V A+F + GL
Sbjct: 5 HPDQFEPPELTPDEIQARVLYRDGLMLVIDKPPGLPVHRGPKGGPNLEASFDALRYGLPR 64
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
P H++D T GC+VL R ++ + + ++ K Y A+
Sbjct: 65 PPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSRISKTYWAIVEG 111
>gi|423509205|ref|ZP_17485736.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
gi|402456496|gb|EJV88269.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
Length = 307
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEGKV 180
>gi|423434882|ref|ZP_17411863.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|401125120|gb|EJQ32880.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
Length = 307
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR-------FPRCYDIDWNSRIIAVTE 225
KG TV Q+ + +++++ L+VH+ + + Y + + ++ V +
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEEEYGVDPEYGELYVVYEDDHVLIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEQMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 156 GAIMDRLLMERKIKRTYAALVEGKV 180
>gi|357417753|ref|YP_004930773.1| pseudouridine synthase [Pseudoxanthomonas spadix BD-a59]
gi|355335331|gb|AER56732.1| pseudouridine synthase [Pseudoxanthomonas spadix BD-a59]
Length = 326
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G + G + + T RAL L H++D T G +VLA+ + +
Sbjct: 110 LVINKPTGVASHGGSGISHGAIETM--RALRPKQALELVHRLDRDTSGLLVLAKKRAALT 167
Query: 288 IFHRKIRE-----KKVKKLYLALTTAPLPVGIMT 316
+RE K ++K YL L T LP G MT
Sbjct: 168 ELQALLREDAGPNKGIRKRYLTLLTGRLPDGTMT 201
>gi|328869983|gb|EGG18358.1| hypothetical protein DFA_03852 [Dictyostelium fasciculatum]
Length = 169
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 231 DKPAGTSVGGTTDNIEESCATFA--SRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSI 288
DKP G +VG DN++ + + + + TP+ H+ID T G +L + +
Sbjct: 18 DKPHGINVGPLIDNLKNNLSWMVRQQQQQSIDTPIYNPHRIDFPTRGLCLLVKKSDEIHR 77
Query: 289 FHRKIREKKVKKLYLAL-----------------TTAPLPVGIMTHYMRP 321
F++ +++ +KK Y L VG HYM+P
Sbjct: 78 FNQLFKDRTIKKRYRVFIYENQNDKDKEIEKDGEEKEKLRVGRYIHYMKP 127
>gi|163760834|ref|ZP_02167913.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
gi|162281878|gb|EDQ32170.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
Length = 329
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D D S+++ +S V V +KPAG +V G T N+++ + ++ R H+
Sbjct: 87 DGDVLSQMLLHEDSKVLVFNKPAGLAVQGGSGVTRNVDDMLEAWRNKK---GEKPRLVHR 143
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+D T G +V+ART+ RE+ KK Y AL T
Sbjct: 144 LDRDTAGVLVVARTRGAAQALTAAFRERTTKKTYWALVTG 183
>gi|359406913|ref|ZP_09199557.1| pseudouridine synthase, RluA family [Prevotella stercorea DSM
18206]
gi|357554655|gb|EHJ36369.1| pseudouridine synthase, RluA family [Prevotella stercorea DSM
18206]
Length = 610
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 219 RIIAVTESHVVLDKPAGT-SVGGTTDN-----IEESCATFASRALGLTTPLRTTHQIDNC 272
R++ E +V+DKPAG SV G D+ +EE A + + L+ H++D
Sbjct: 336 RVLYADEYILVVDKPAGMLSVPGKADDSASVSVEEYFANNSKFKTQNSKFLKAAHRLDMD 395
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321
T G +VLART++ R+ ++ K Y A+ + +P I+ Y P
Sbjct: 396 TSGLLVLARTEQAYVELQRQFASRETVKRYEAVLSG-VPKHIVGGYGIP 443
>gi|374674199|dbj|BAL52090.1| pseudouridine synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 290
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+ I+ E +V++KP G G T + A A + + H++D T G V
Sbjct: 83 ADILYEDEHLIVVNKPEGMKTHGNT---ADELALQNHVAAAINQEVFVVHRLDQATSGAV 139
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ A+ Q I + E K+ + YLAL P
Sbjct: 140 LFAKNQFVLPILGKMFEENKIHREYLALVKGHFP 173
>gi|88658198|ref|YP_507572.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
gi|88599655|gb|ABD45124.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
Length = 307
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KPAG SV G T ++ S + + ++ H++D T G ++LAR
Sbjct: 101 LIINKPAGISVQGGT-KVKISISDIVDKIRD-GESMKIVHRLDKDTSGILMLARNARISR 158
Query: 288 IFHRKIREKKVKKLYLALTTA 308
+ + + ++V+K YLALT
Sbjct: 159 LIMHEFKNRRVEKKYLALTQG 179
>gi|423667070|ref|ZP_17642099.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|423676896|ref|ZP_17651835.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|401304514|gb|EJS10066.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|401307157|gb|EJS12614.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
Length = 307
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEGKV 180
>gi|423366872|ref|ZP_17344305.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
gi|401087054|gb|EJP95269.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
Length = 307
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEGKV 180
>gi|113970739|ref|YP_734532.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|114047966|ref|YP_738516.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
gi|113885423|gb|ABI39475.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|113889408|gb|ABI43459.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
Length = 329
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 106 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 163
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R+KK++K YLAL
Sbjct: 164 LLVAKKRSALKHLHDQLRQKKMQKDYLALVKG 195
>gi|444917615|ref|ZP_21237710.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
gi|444710956|gb|ELW51917.1| Ribosomal large subunit pseudouridine synthase D [Cystobacter
fuscus DSM 2262]
Length = 317
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RI+ + + +DKPAG + T + +S + LG P H++D T G V
Sbjct: 84 RILHEDDRLLAVDKPAGMTAQPTEGRVGDSLVDWVGTHLG--RPAGLVHRLDRETSGVTV 141
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
+T E + + RE +K YLA
Sbjct: 142 FGKTPEATAALAGEFREGHARKRYLA 167
>gi|359452187|ref|ZP_09241542.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20495]
gi|414069406|ref|ZP_11405400.1| tRNA pseudouridine synthase / 23S rRNA pseudouridine synthase
[Pseudoalteromonas sp. Bsw20308]
gi|358050781|dbj|GAA77791.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20495]
gi|410808209|gb|EKS14181.1| tRNA pseudouridine synthase / 23S rRNA pseudouridine synthase
[Pseudoalteromonas sp. Bsw20308]
Length = 226
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESH---VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
S+I+ V +H +L+KPAG + + EE L+ L H++D T
Sbjct: 6 SKILNVVYTHNDFYILEKPAGLNF-----HSEEGPGFVVLAEQQLSQKLYGVHRLDKVTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G ++LAR + + F E + K YLA++ A
Sbjct: 61 GLIILARNKASAAAFTVMFTEHAINKFYLAISDA 94
>gi|301103159|ref|XP_002900666.1| RNA pseudouridylate synthase-like protein [Phytophthora infestans
T30-4]
gi|262101929|gb|EEY59981.1| RNA pseudouridylate synthase-like protein [Phytophthora infestans
T30-4]
Length = 458
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTD-NIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
R+++ E VVL+K + G D +E++ A R R HQ+D T G +
Sbjct: 66 RVLSRDEHFVVLNKGPDVRMDGAFDVTLEKALA----RDFPQVEKFRWIHQLDFATSGVL 121
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
V+ ++ + R REK+V+K YLA+ LP
Sbjct: 122 VVGVNKDATATGCRLFREKQVQKEYLAVVRGHLP 155
>gi|160942600|ref|ZP_02089845.1| hypothetical protein FAEPRAM212_00074 [Faecalibacterium prausnitzii
M21/2]
gi|158446079|gb|EDP23082.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
M21/2]
Length = 316
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 20/97 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
++++KPAG +V G D+ T +RAL L TP H++D T G
Sbjct: 95 LIVNKPAGVAVDGPEDD------TLLNRALLYLNKQGEYKENDLYTPA-LCHRLDTGTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP 311
V++A+T E +F I+ ++V+K YL +T P+P
Sbjct: 148 LVIIAKTPEAEELFLSAIKNREVQKTYLCVTFGRPMP 184
>gi|85373096|ref|YP_457158.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
gi|84786179|gb|ABC62361.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
Length = 399
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL-RTTHQIDNCTEGCVV 278
+I T+S +VL+KP G + G T + + G P R H++D T G ++
Sbjct: 99 VIKETKSAIVLNKPPGLATQGGTKTTKHVDGLLDAFVDGEDDPRPRLVHRLDKDTSGVLL 158
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
+ART + + ++ + KK+Y AL
Sbjct: 159 IARTPGSAAAYSKRFAGRSAKKVYWAL 185
>gi|39933287|ref|NP_945563.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39652912|emb|CAE25654.1| Pseudouridine synthase:Pseudouridine synthase, Rlu
[Rhodopseudomonas palustris CGA009]
Length = 324
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 204 HPKRF--PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
HP +F P + +R++ +V+DKP G V A+F + GL
Sbjct: 5 HPDQFEPPELTPDEIQARVLYRDGLMLVIDKPPGLPVHRGPKGGPNLEASFDALRYGLPR 64
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
P H++D T GC+VL R ++ + + ++ K Y A+
Sbjct: 65 PPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSRISKTYWAIVEG 111
>gi|325578565|ref|ZP_08148665.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
gi|325159801|gb|EGC71931.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parainfluenzae ATCC 33392]
Length = 225
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ T+ +++ KP G SV D E T + LG+ + H++D T G ++L
Sbjct: 5 IVYQTDDFIIIYKPCGLSV--HKDQSEIGLTTLLAEQLGVPQ-VWLVHRLDKVTSGLLIL 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTT 307
A E + F R E ++K YLAL+
Sbjct: 62 ALNAESAAEFFRLFSEHHIQKTYLALSN 89
>gi|114704677|ref|ZP_01437585.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
gi|114539462|gb|EAU42582.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
Length = 328
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+I E +V +KPAG +V G + ++++ + ++ R H++D T G
Sbjct: 97 VIYEDEKVIVFNKPAGLAVQGGSGVARHVDDMLEAWRNKK---GEKPRLVHRLDRDTSGI 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+V+ART+ + + RE+ KKLY A+
Sbjct: 154 LVVARTRGAATALTKAFRERDTKKLYWAVVKG 185
>gi|110678758|ref|YP_681765.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
gi|109454874|gb|ABG31079.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
Length = 346
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ ++KPAG G + + G R H++D T G ++LART+
Sbjct: 97 DDHIIAINKPAGLPTQGGSGQTRHVDGLAEALKFGFEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
+R K+ +K+Y AL G+ T Y+ I A
Sbjct: 157 MAAKALTTAMRHKETRKIYWALV-----AGVPTPYLGEIRYA 193
>gi|229010681|ref|ZP_04167879.1| Pseudouridine synthase [Bacillus mycoides DSM 2048]
gi|423486505|ref|ZP_17463187.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
gi|423492229|ref|ZP_17468873.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|423500980|ref|ZP_17477597.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|423601272|ref|ZP_17577272.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|423663732|ref|ZP_17638901.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|228750575|gb|EEM00403.1| Pseudouridine synthase [Bacillus mycoides DSM 2048]
gi|401154304|gb|EJQ61722.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|401156513|gb|EJQ63917.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|401230699|gb|EJR37205.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|401295632|gb|EJS01256.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|402439286|gb|EJV71293.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
Length = 307
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y+AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYMALVEGKV 180
>gi|225570461|ref|ZP_03779486.1| hypothetical protein CLOHYLEM_06562 [Clostridium hylemonae DSM
15053]
gi|225160658|gb|EEG73277.1| hypothetical protein CLOHYLEM_06562 [Clostridium hylemonae DSM
15053]
Length = 291
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 220 IIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
II E +V+DKPAG S G + + + + SR G+ R +++D T G
Sbjct: 83 IIYEDEDLLVIDKPAGMPTQPSQGNHDNTLANALVCYYSRR-GIPFTYRCINRLDKNTSG 141
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+++A+ SI + I+E+++ + YLAL P
Sbjct: 142 LLIVAKHMLSASILYAMIKERRIHREYLALAEGLTP 177
>gi|419801690|ref|ZP_14326905.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK262]
gi|419844396|ref|ZP_14367687.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK2019]
gi|385193297|gb|EIF40675.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK262]
gi|386417521|gb|EIJ32000.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
parainfluenzae HK2019]
Length = 225
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ T+ +++ KP G SV D E T + LG+ + H++D T G ++L
Sbjct: 5 IVYQTDDFIIIYKPCGLSV--HKDQSEIGLTTLLAEQLGVPQ-VWLVHRLDKVTSGLLIL 61
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTT 307
A E + F R E ++K YLAL+
Sbjct: 62 ALNAESAAEFFRLFSEHHIQKTYLALSN 89
>gi|229166225|ref|ZP_04293984.1| Pseudouridine synthase [Bacillus cereus AH621]
gi|423594686|ref|ZP_17570717.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
gi|228617170|gb|EEK74236.1| Pseudouridine synthase [Bacillus cereus AH621]
gi|401223638|gb|EJR30206.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
Length = 307
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 230 LDK-------PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++K P+ + GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 INKQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y+AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYMALVEGKV 180
>gi|398309983|ref|ZP_10513457.1| pseudouridine synthase [Bacillus mojavensis RO-H-1]
Length = 302
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS------RALGLTTPLRTTHQIDNCTEGCVVLAR 281
++++KPAG S T N E T A+ + G T +R H++D T G VV A+
Sbjct: 93 LIVNKPAGIS---THPNEEGQTGTLANLIAYHFQVNGETIKVRHVHRLDQDTSGAVVFAK 149
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I +++ +K +K+ YLA+ L
Sbjct: 150 HRLAHAILDQQLEKKTLKRTYLAIVEGKL 178
>gi|156934429|ref|YP_001438345.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii ATCC
BAA-894]
gi|156532683|gb|ABU77509.1| hypothetical protein ESA_02260 [Cronobacter sakazakii ATCC BAA-894]
Length = 317
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRYLHEQLREKGMQKDYLAL 179
>gi|325289223|ref|YP_004265404.1| pseudouridine synthase [Syntrophobotulus glycolicus DSM 8271]
gi|324964624|gb|ADY55403.1| pseudouridine synthase, RluA family [Syntrophobotulus glycolicus
DSM 8271]
Length = 303
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 165 VLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR----FPRCYDIDWNSRI 220
+LS ++ K + Q ++ H + ++AG ++ +++ P +D I
Sbjct: 28 LLSHSLVVRLKHQNKIQVNGQLVHTNYRLQAGDFVTINIDLSEENNIIPESIPLD----I 83
Query: 221 IAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+ E V ++KPAG S+ GGT + T+ + LG R +++D T G
Sbjct: 84 VYEDEDFVAVNKPAGMSIHPSRLGGT--GTLANAVTYHWQGLGRNILFRPINRLDKDTSG 141
Query: 276 CVVLARTQ-EYCSIFHRKIREKKVKKLYLALTTAPL 310
V++ ++Q + IF+ ++++ K+ + Y+AL L
Sbjct: 142 LVLIGKSQFAHQGIFN-QLKQHKIDRRYIALVERAL 176
>gi|452963354|gb|EME68427.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 228
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SR++ + +VLDKPAG +V ++ + + G + H++D T GC+
Sbjct: 8 SRVLYKDQDVIVLDKPAGLAVHAGPNSPDHLELYLPGLSFGWAEVPKLAHRLDRDTSGCL 67
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
+L R + + + +V K+Y ++
Sbjct: 68 ILGRHAKAIKRLGKMFEQHRVDKVYWSV 95
>gi|156975190|ref|YP_001446096.1| rRNA ribosomal pseudouridine synthase [Vibrio harveyi ATCC
BAA-1116]
gi|156526784|gb|ABU71870.1| hypothetical protein VIBHAR_02917 [Vibrio harveyi ATCC BAA-1116]
Length = 339
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II + +VL+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 121 IIFEDDHMLVLNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 178
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK VKK Y AL
Sbjct: 179 VAKKRSALRHLQAQFREKTVKKFYFALVMG 208
>gi|144898737|emb|CAM75601.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 226
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+RI+ + +VLDKPAG +V ++ + + G + R H++D T GC
Sbjct: 7 KARILFKDQDVIVLDKPAGLAVHAGPNSPDHLELYLDALKFGWSMAPRLAHRLDRDTSGC 66
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLY 302
++L R + + + +V+K Y
Sbjct: 67 LLLGRHDKSIKRLGKMFMQGRVEKAY 92
>gi|365900462|ref|ZP_09438334.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
gi|365418790|emb|CCE10876.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
Length = 257
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+R++ +V+DKPAG V A+F + GL P H++D T GC+
Sbjct: 13 ARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCL 72
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
VL R ++ + + K+ K Y A+
Sbjct: 73 VLGRHRKATASLGLLFKHGKISKTYWAV 100
>gi|298715322|emb|CBJ27950.1| ribosomal large subunit pseudouridine synthase D [Ectocarpus
siliculosus]
Length = 237
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGIMT 316
L PL ++D CT G VV AR ++ + R ++VKK YLAL T P+ G M
Sbjct: 89 LPPPLHAVSRLDVCTSGVVVFARHKDATKQLNELFRARRVKKRYLALLTPGPPVSTGSMV 148
Query: 317 HYMRPINI 324
+ R +
Sbjct: 149 RWRRAWGL 156
>gi|397166740|ref|ZP_10490184.1| pseudouridine synthase, RluA family protein [Enterobacter
radicincitans DSM 16656]
gi|396091828|gb|EJI89394.1| pseudouridine synthase, RluA family protein [Enterobacter
radicincitans DSM 16656]
Length = 219
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G D ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLDEHKDSVMTRIQRDFPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A T+ R+ RE++ KK YLA
Sbjct: 72 VVALTKNAERELKRQFREREPKKQYLA 98
>gi|254294409|ref|YP_003060432.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254042940|gb|ACT59735.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 343
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTE 274
S I+ E VL+KP+G +V G T + + A +R G P R H++D T
Sbjct: 98 QSLILYEDEDVYVLNKPSGLAVQGGTKTLRHVDGMANALTRP-GQDKP-RLVHRLDKDTS 155
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +VLA+T + + + R +++ K+Y A+
Sbjct: 156 GLLVLAKTAQSAAEMSKHFRSRELDKIYWAVVKG 189
>gi|423472733|ref|ZP_17449476.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
gi|402427294|gb|EJV59403.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
Length = 307
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGEKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYTALVEGKV 180
>gi|416243893|ref|ZP_11634158.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC7]
gi|326568395|gb|EGE18475.1| RluA family pseudouridine synthase [Moraxella catarrhalis BC7]
Length = 382
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RII +VL+KP G +V G + ES + L + L H+ID T G
Sbjct: 143 ERIIFEDNGLIVLNKPHGMAVHGGSG---ESFGIIEAMRLAMGKKYLELIHRIDKDTSGL 199
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + I + R+K ++K YL L
Sbjct: 200 LLIAKKRSTLKILQEQFRKKTIQKRYLCLVMG 231
>gi|195384880|ref|XP_002051140.1| GJ14588 [Drosophila virilis]
gi|194147597|gb|EDW63295.1| GJ14588 [Drosophila virilis]
Length = 552
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E +V++KPA V + ++ L LRT H+ID T G ++
Sbjct: 228 IVHMDEDILVVNKPASIPVHPCGRYRHNTVIFILAKEFNLKN-LRTIHRIDRLTSGLLLF 286
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R E ++IR ++V+K Y+ P GI+
Sbjct: 287 GRNSEKARQMEQQIRNRQVQKEYICCVEGQFPDGII 322
>gi|421494286|ref|ZP_15941636.1| RLUC [Morganella morganii subsp. morganii KT]
gi|455739888|ref|YP_007506154.1| Ribosomal large subunit pseudouridine synthase C [Morganella
morganii subsp. morganii KT]
gi|400191453|gb|EJO24599.1| RLUC [Morganella morganii subsp. morganii KT]
gi|455421451|gb|AGG31781.1| Ribosomal large subunit pseudouridine synthase C [Morganella
morganii subsp. morganii KT]
Length = 319
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQIDNCTEGCVVLART 282
+V++KPAGT+V G S +F A RAL L H++D T G +++A+
Sbjct: 103 LVINKPAGTAVHGG------SGLSFGVIEAMRALRPEARFLELVHRLDRDTSGILLIAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K+++K YLAL APL I+ R + ++P E
Sbjct: 157 RSALRALHEQLRLKQMQKDYLALVRGQWQSSVKVVQAPLLKNILQSGERVVKVSP----E 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|388599756|ref|ZP_10158152.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
DS40M4]
Length = 314
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + +VL+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIFEDDHMLVLNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|146337531|ref|YP_001202579.1| RNA pseudouridine synthase [Bradyrhizobium sp. ORS 278]
gi|146190337|emb|CAL74333.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. ORS 278]
Length = 300
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+R++ +V+DKPAG V A+F + GL P H++D T GC+
Sbjct: 13 ARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDALRFGLPRPPVLAHRLDKETSGCL 72
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
VL R ++ + + K+ K Y A+
Sbjct: 73 VLGRHRKATASLGLLFKHGKISKTYWAV 100
>gi|444426075|ref|ZP_21221502.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|444240699|gb|ELU52235.1| ribosomal large subunit pseudouridine synthase C [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 314
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + +VL+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIFEDDHMLVLNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|423524809|ref|ZP_17501282.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
gi|401169035|gb|EJQ76282.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
Length = 307
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 157 AIMDRLLMERKIKRTYTALVEG 178
>gi|326692367|ref|ZP_08229372.1| pseudouridylate synthase [Leuconostoc argentinum KCTC 3773]
Length = 305
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEES-----CATFASRAL-GLTTPLR--TTHQIDN 271
II + VV+DKPAG + N ++ A F +R L P R H+ID
Sbjct: 87 IIFENDDFVVVDKPAGMKMHPHAPNEADTLLNYLAADFQARHLMSAGQPARPYMVHRIDR 146
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
T G V++A+ I +R + +K +K+ YLA
Sbjct: 147 DTSGAVIVAKNPVVVPILNRLLAQKAIKRTYLA 179
>gi|313115842|ref|ZP_07801276.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310621840|gb|EFQ05361.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 298
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL------------GLTTPLRTTHQIDNCTEG 275
V+++KPAG +V G D+ T +R L L TP H++D T G
Sbjct: 77 VIVNKPAGLAVDGPEDD------TLLNRTLLYLNQQGEYKENDLYTPA-LCHRLDTGTSG 129
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP 311
V++A+T E +F I+ ++VKK YL +T P+P
Sbjct: 130 LVIVAKTPEAEELFLAAIKNREVKKTYLCVTFGRPMP 166
>gi|254459281|ref|ZP_05072702.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|373866526|ref|ZP_09602924.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
gi|207083894|gb|EDZ61185.1| ribosomal large subunit pseudouridine synthase, RluA family
[Sulfurimonas gotlandica GD1]
gi|372468627|gb|EHP28831.1| ribosomal large subunit pseudouridine synthase D [Sulfurimonas
gotlandica GD1]
Length = 325
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
+++G ++V + DID+N I+ + +V++KP+G +V E + +
Sbjct: 53 LKSGQNIKVEFPEAKESPALDIDFNVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDW 112
Query: 253 AS----RALGLTTPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
R ++ R H++D T G +V+A+ E ++++K + + YLA+
Sbjct: 113 LKHKGIRLSNISGEERHGIVHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKSMGRYYLAVL 172
Query: 307 TAPLPVGIMT 316
PL I T
Sbjct: 173 NPPLKDEITT 182
>gi|284044971|ref|YP_003395311.1| pseudouridine synthase [Conexibacter woesei DSM 14684]
gi|283949192|gb|ADB51936.1| pseudouridine synthase, RluA family [Conexibacter woesei DSM 14684]
Length = 299
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 221 IAVTESHV-VLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLRT--THQIDNCT 273
+A + H+ ++DKPAG V G T + ++ A RA G P R H++D T
Sbjct: 80 VAWEDEHLLIVDKPAGVVVHPAPGNRTGTLSQA---LAGRAAGGEDPSRAGIVHRLDRDT 136
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+T+E R I + V + Y+AL P
Sbjct: 137 SGLLIVAKTEEAHRELKRMIEARDVTREYVALVEGTPP 174
>gi|153003163|ref|YP_001377488.1| RluA family pseudouridine synthase [Anaeromyxobacter sp. Fw109-5]
gi|152026736|gb|ABS24504.1| pseudouridine synthase, RluA family [Anaeromyxobacter sp. Fw109-5]
Length = 311
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 220 IIAVTESHVVLDKPAGTSV-------GGTTDNIEESCATFASRALGLTTPLR--TTHQID 270
++ T VV+DKPAG +V GGT N A F A P ++D
Sbjct: 79 VLVETPRLVVVDKPAGVAVHPLAPGEGGTLANA--VVARFPECAGASPEPREGGAVQRLD 136
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GCV AR E H ++ ++V+K+YLAL
Sbjct: 137 LETSGCVTFARDPEAWQELHARLSAREVEKIYLALVAG 174
>gi|392390653|ref|YP_006427256.1| 23S RNA-specific pseudouridylate synthase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521731|gb|AFL97462.1| 23S RNA-specific pseudouridylate synthase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 229
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP----VGIMTHYMRP- 321
H++D T G +V A+T + S + K + +KV K Y AL T P G +THY+R
Sbjct: 60 HRLDRVTSGAIVYAKTSKALSRMNEKFKSRKVDKTYWALCTPLAPNQPTEGTLTHYLRKN 119
Query: 322 -----INIAPRLVSEGKTIFGLALMIREM--VWKFE 350
+ + PR K +I+++ W FE
Sbjct: 120 SKNNTVTVFPRPTDGAKKAVLHYKLIKKLDRYWLFE 155
>gi|357590027|ref|ZP_09128693.1| hypothetical protein CnurS_07492 [Corynebacterium nuruki S6-4]
Length = 291
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ E +V+DKP S +I E+ A R GL T L H++D T G ++
Sbjct: 25 RLLYRDEDLLVVDKPPFMSTLPRGQHITETAVVRARRQFGLGT-LSPAHRLDRLTRGVLL 83
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAP 309
E + + + +K+Y ALT P
Sbjct: 84 FTVRPEVRGRYQQLFERRAAQKVYSALTAVP 114
>gi|298292787|ref|YP_003694726.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929298|gb|ADH90107.1| pseudouridine synthase [Starkeya novella DSM 506]
Length = 250
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+D +R++ +V+DKPAG +V E + GL H++D T
Sbjct: 9 LDIAARVLHRDGMMLVIDKPAGLAVHKGPKGGETLADHLDALRFGLPNAPELAHRLDKDT 68
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
GC+VL R ++ + + + V K Y+A+
Sbjct: 69 SGCLVLGRHRKALADLGKAFADGTVGKTYMAV 100
>gi|86156693|ref|YP_463478.1| pseudouridine synthase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773204|gb|ABC80041.1| Pseudouridine synthase, RluD [Anaeromyxobacter dehalogenans 2CP-C]
Length = 312
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 227 HVVLDKPAGTSV-------GGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCT 273
++V+DKPAG +V GGT N E + A+ R G ++D T
Sbjct: 86 YLVVDKPAGVAVHPLAPGEGGTLANAVAARHPECAGASPEPREGG------AVQRLDLET 139
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
GCV+ AR E H ++ V K+YLAL +P G
Sbjct: 140 SGCVLFARDPEAWEALHAQLGAHTVDKVYLALAVGRVPAG 179
>gi|393759256|ref|ZP_10348072.1| ribosomal large subunit pseudouridine synthase D [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
gi|393162484|gb|EJC62542.1| ribosomal large subunit pseudouridine synthase D [Alcaligenes
faecalis subsp. faecalis NCIB 8687]
Length = 321
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQI 269
D+D+ I+A ++S +V++KP G N + F AL H++
Sbjct: 91 DVDFE--IVAQSDSWLVVNKPVGLVTHPGAGNWRGTLLNGLLFRFPALRQVPRAGVVHRL 148
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
D T G +V+ART+ + F R+++E+ + + YLAL LP
Sbjct: 149 DKDTSGLLVVARTEVAQTHFVRQLQERSMGRQYLALVHGVLP 190
>gi|339504824|ref|YP_004692244.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
gi|338758817|gb|AEI95281.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
Length = 346
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ ++KPAG G + + G R H++D T G ++LART+
Sbjct: 97 DDHIIAINKPAGLPTQGGSGQTRHVDGLSEALKFGFEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
+R K+ +K+Y AL G+ T Y+ I A
Sbjct: 157 MAAKALTTAMRHKETRKIYWALV-----AGVPTPYLGEIRYA 193
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGG---TTDNIEESCATFASRALGLTT-PLRTTHQIDNCT 273
RI+ E VVL+KP G V G + I + A + + PL H++D T
Sbjct: 442 QRIVYQNEELVVLNKPYGLPVHGGPGVKNCIADVLPILAKMLMNMKAEPLHLCHRLDKET 501
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +VLAR++E + ++V+K+Y A++
Sbjct: 502 TGLMVLARSREVADRIRLLFKTRQVEKIYWAISVG 536
>gi|385208626|ref|ZP_10035494.1| pseudouridine synthase, RluA family [Burkholderia sp. Ch1-1]
gi|385180964|gb|EIF30240.1| pseudouridine synthase, RluA family [Burkholderia sp. Ch1-1]
Length = 323
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 82 KIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 140
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE K+ K Y A
Sbjct: 141 LAKKRSALVNLHEQIRENKMDKRYYA 166
>gi|103486532|ref|YP_616093.1| pseudouridine synthase [Sphingopyxis alaskensis RB2256]
gi|98976609|gb|ABF52760.1| pseudouridine synthase [Sphingopyxis alaskensis RB2256]
Length = 227
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ R++ + +V+DKPAG V D G H++D T GC
Sbjct: 4 SDRVLFLDGEALVIDKPAGLPVDAPRDGSLSIENHLDLLRFGFKRWPLPVHRLDRDTSGC 63
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
++LAR + F R ++V+K YLA+
Sbjct: 64 LLLARNPKAHGRFTRAFENREVEKQYLAI 92
>gi|37526730|ref|NP_930074.1| 23S rRNA pseudouridylate synthase C [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36786162|emb|CAE15214.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 319
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTE 274
I + H+ VL+KPAGT+V G S +F L + P L H++D T
Sbjct: 95 ILYEDDHILVLNKPAGTAVHGG------SGLSFGVIEGLRVLRPEAKFLELVHRLDRDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+ + H ++R K+++K YLAL P
Sbjct: 149 GILLIAKKRSALRALHEQLRLKQMQKDYLALVRGQWP 185
>gi|410087392|ref|ZP_11284096.1| Ribosomal large subunit pseudouridine synthase C [Morganella
morganii SC01]
gi|409766127|gb|EKN50223.1| Ribosomal large subunit pseudouridine synthase C [Morganella
morganii SC01]
Length = 345
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQIDNCTEGCVVLART 282
+V++KPAGT+V G S +F A RAL L H++D T G +++A+
Sbjct: 129 LVINKPAGTAVHGG------SGLSFGVIEAMRALRPEARFLELVHRLDRDTSGILLIAKK 182
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K+++K YLAL APL I+ R + ++P E
Sbjct: 183 RSALRALHEQLRLKQMQKDYLALVRGQWQSSVKVVQAPLLKNILQSGERVVKVSP----E 238
Query: 332 GK 333
GK
Sbjct: 239 GK 240
>gi|407783425|ref|ZP_11130626.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
gi|407202150|gb|EKE72145.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
Length = 222
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +++DKPAG A F + GL P H++D T GC
Sbjct: 2 QARVLHRDGLMLIIDKPAGLPCHAGPKGGPNLEAQFDALRFGLPKPPSLAHRLDRDTSGC 61
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPIN 323
+VL R ++ + R + K Y A+ P H RP++
Sbjct: 62 LVLGRHRKALAKLGRLFSSGGIDKTYWAVVAGG-PQEEAGHIDRPLS 107
>gi|414164763|ref|ZP_11421010.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410882543|gb|EKS30383.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 245
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVVDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+VL R ++ + + K+ K Y A+
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIGKTYWAVVEG 103
>gi|261253417|ref|ZP_05945990.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936808|gb|EEX92797.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 300
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II + ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 80 IIHEDDHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPEARFLELVHRIDRDTSGILL 137
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK VKK Y AL
Sbjct: 138 VAKKRSALRHLQAQFREKTVKKFYFALVMG 167
>gi|423555848|ref|ZP_17532151.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|401196190|gb|EJR03136.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
Length = 307
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVFEDDHVLI 96
Query: 230 LDKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A F + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 157 AIMDRLLMERKIKRTYTALVEG 178
>gi|383643235|ref|ZP_09955641.1| pseudouridylate synthase [Sphingomonas elodea ATCC 31461]
Length = 228
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 216 WNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+ R++ + +++DKPAG V D E G H++D T G
Sbjct: 11 FKDRVLFIDGEALIIDKPAGLPVDRPRDRSESLEDLLDQLTFGFERLPVPVHRLDRDTSG 70
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
C++LAR + F + +V K Y+A+
Sbjct: 71 CLLLARNPKAMKRFGQAFEAGQVTKRYVAI 100
>gi|417953175|ref|ZP_12596223.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342817707|gb|EGU52584.1| ribosomal large subunit pseudouridine synthase C [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 316
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIHEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPEARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|332187172|ref|ZP_08388912.1| RNA pseudouridylate synthase family protein [Sphingomonas sp. S17]
gi|332012872|gb|EGI54937.1| RNA pseudouridylate synthase family protein [Sphingomonas sp. S17]
Length = 214
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 23/138 (16%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
R++ + +V+DKPAG V D S G + H++D T GC
Sbjct: 3 GDRVLFIDGEALVIDKPAGLPVDPPRDGSLSLENHLESLRFGFKRWPQAVHRLDRDTSGC 62
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIF 336
++L+R + + F + +V+K YLA+ V EG+ +
Sbjct: 63 LLLSRNPKAHARFQQAFEAGQVEKRYLAVLDG--------------------VVEGEGMI 102
Query: 337 GLALM---IREMVWKFEA 351
LAL RE W+ A
Sbjct: 103 DLALAKVSTREAGWRMVA 120
>gi|444352050|ref|YP_007388194.1| Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) ##
LSU Psi955, Psi2504 and Psi2580 [Enterobacter aerogenes
EA1509E]
gi|443902880|emb|CCG30654.1| Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) ##
LSU Psi955, Psi2504 and Psi2580 [Enterobacter aerogenes
EA1509E]
Length = 331
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSDVILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|402306779|ref|ZP_10825817.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
gi|400374207|gb|EJP27128.1| rRNA pseudouridylate synthase C [Haemophilus sputorum HK 2154]
Length = 320
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNC 272
+ +I+ E +V++KP+G +V GG+ N A RAL L H+ID
Sbjct: 93 ELEQQILYEDEVLLVINKPSGIAVHGGSGLNF---GVIEALRALRPQARFLELVHRIDRD 149
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T G +++A+ + H ++REK V+K YLAL
Sbjct: 150 TSGILLVAKKRSALRHLHEQLREKTVQKDYLAL 182
>gi|296284584|ref|ZP_06862582.1| pseudouridylate synthase [Citromicrobium bathyomarinum JL354]
Length = 388
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 196 GTYLRVHVHPKRFPRCYDIDWNSRIIAVTES--HVVLDKPAGTSVGGTTDNIEESCATFA 253
G R P+R D +R + + E+ +VL+KP G + G +
Sbjct: 76 GNPARAKTPPRRRELTEDQKAQARAMVIKETPNAIVLNKPPGLATQGGSKTFSHVDGLLD 135
Query: 254 SRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
+ G R H++D T G +++ART + F ++ + KK+Y AL VG
Sbjct: 136 AFVEGDGPRPRLVHRLDKDTSGVLLIARTPGSAAAFSKRFAGRSAKKVYWALV-----VG 190
Query: 314 IMTHYMRPIN 323
+ ++ I+
Sbjct: 191 VPEQHVGEID 200
>gi|229154958|ref|ZP_04283072.1| Pseudouridine synthase [Bacillus cereus ATCC 4342]
gi|228628516|gb|EEK85229.1| Pseudouridine synthase [Bacillus cereus ATCC 4342]
Length = 307
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|424046879|ref|ZP_17784441.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-03]
gi|408884939|gb|EKM23667.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-03]
Length = 314
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCT 273
+II + ++L+KP+GT+V G + A AL P L H+ID T
Sbjct: 94 DKIIFEDDHLLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDT 148
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +++A+ + + REK VKK Y AL
Sbjct: 149 SGILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|359299253|ref|ZP_09185092.1| 23S rRNA pseudouridylate synthase C [Haemophilus [parainfluenzae]
CCUG 13788]
Length = 320
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNC 272
+ +I+ E +V++KP+G +V GG+ N A RAL L H+ID
Sbjct: 93 ELEQQILYEDEVLLVINKPSGIAVHGGSGLNF---GVIEALRALRPQARFLELVHRIDRD 149
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T G +++A+ + H ++REK V+K YLAL
Sbjct: 150 TSGILLVAKKRSSLRHLHEQLREKTVQKDYLAL 182
>gi|423445905|ref|ZP_17422784.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|401132998|gb|EJQ40631.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
Length = 307
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G +VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKFQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRYIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEG 178
>gi|228984465|ref|ZP_04144642.1| Pseudouridine synthase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228775168|gb|EEM23557.1| Pseudouridine synthase [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 307
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|218232731|ref|YP_002366075.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|229108847|ref|ZP_04238452.1| Pseudouridine synthase [Bacillus cereus Rock1-15]
gi|229149592|ref|ZP_04277824.1| Pseudouridine synthase [Bacillus cereus m1550]
gi|423588224|ref|ZP_17564311.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|218160688|gb|ACK60680.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|228633938|gb|EEK90535.1| Pseudouridine synthase [Bacillus cereus m1550]
gi|228674616|gb|EEL29855.1| Pseudouridine synthase [Bacillus cereus Rock1-15]
gi|401226732|gb|EJR33266.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
Length = 307
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLAL 305
SI R + E+K+K+ Y AL
Sbjct: 157 SIMDRLLMERKIKRTYAAL 175
>gi|209965860|ref|YP_002298775.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209959326|gb|ACI99962.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 239
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGT------TDNIEESCATFASRALGLTTPLRTTHQID 270
+R++ ++LDKPAG +V G DN+E F GL P H++D
Sbjct: 7 QARLLYRDGLMLILDKPAGIAVHGGPGSRHGADNLER---YFEHLRFGLPRPPALAHRLD 63
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T GC+VL R + ++ ++ K Y A+
Sbjct: 64 RDTSGCLVLGRHPKALRKLGLLFQDGRIGKTYWAV 98
>gi|253701860|ref|YP_003023049.1| pseudouridine synthase [Geobacter sp. M21]
gi|251776710|gb|ACT19291.1| pseudouridine synthase, RluA family [Geobacter sp. M21]
Length = 302
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 228 VVLDKPAGTSVGGTTD----NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ L+K G SV T D N+ + T + G+ LR +++D T G ++LA++
Sbjct: 88 ISLNKAPGLSVHRTEDPDEVNLVDLAETLLQKRDGVGR-LRPVNRLDKGTSGAIILAKSA 146
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPL 310
+F + ++E+ + KLYLAL L
Sbjct: 147 VAAGMFGKMVQEEGLGKLYLALVEGKL 173
>gi|440288038|ref|YP_007340803.1| ribosomal large subunit pseudouridine synthase C
[Enterobacteriaceae bacterium strain FGI 57]
gi|440047560|gb|AGB78618.1| ribosomal large subunit pseudouridine synthase C
[Enterobacteriaceae bacterium strain FGI 57]
Length = 333
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSDVILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|449308658|ref|YP_007441014.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii SP291]
gi|449098691|gb|AGE86725.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii SP291]
Length = 317
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|423618463|ref|ZP_17594297.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|401254194|gb|EJR60430.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
Length = 307
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G +VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKFQVHMFIEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKAGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEG 178
>gi|373467577|ref|ZP_09558871.1| pseudouridine synthase Rlu family protein [Haemophilus sp. oral
taxon 851 str. F0397]
gi|371758298|gb|EHO47071.1| pseudouridine synthase Rlu family protein [Haemophilus sp. oral
taxon 851 str. F0397]
Length = 224
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQAEQGLTELVAKQLNVPQ-VWLVHRLDKVTSGLLILALNTESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|342904097|ref|ZP_08725899.1| putative pseudouridine synthase, RsuA and RluB/C/D/E/F [Haemophilus
haemolyticus M21621]
gi|342904601|ref|ZP_08726400.1| putative pseudouridine synthase, RluC/RluD, site [Haemophilus
haemolyticus M21621]
gi|341953022|gb|EGT79536.1| putative pseudouridine synthase, RluC/RluD, site [Haemophilus
haemolyticus M21621]
gi|341954106|gb|EGT80600.1| putative pseudouridine synthase, RsuA and RluB/C/D/E/F [Haemophilus
haemolyticus M21621]
Length = 224
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQAEQGLTELVAKQLNVPQ-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|424035602|ref|ZP_17774807.1| pseudouridine synthase, RluA family protein, partial [Vibrio
cholerae HENC-02]
gi|408897600|gb|EKM33322.1| pseudouridine synthase, RluA family protein, partial [Vibrio
cholerae HENC-02]
Length = 302
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 84 IIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 138
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 139 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 171
>gi|134301061|ref|YP_001114557.1| RluA family pseudouridine synthase [Desulfotomaculum reducens MI-1]
gi|134053761|gb|ABO51732.1| pseudouridine synthase, RluA family [Desulfotomaculum reducens
MI-1]
Length = 320
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPA V G TT + + + + + +R H++D T GCV+ A+
Sbjct: 112 LVLNKPAHQLVHPTGQTTRGTMANYLAYYLKQRNVVSAIRPVHRLDRETSGCVIFAKDSR 171
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
I ++++E+ +K+ Y AL
Sbjct: 172 SQFILEQQLKERTLKRTYWALVKG 195
>gi|429118971|ref|ZP_19179715.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter sakazakii 680]
gi|426326521|emb|CCK10452.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter sakazakii 680]
Length = 317
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|365849003|ref|ZP_09389474.1| rRNA pseudouridylate synthase [Yokenella regensburgei ATCC 43003]
gi|364569647|gb|EHM47269.1| rRNA pseudouridylate synthase [Yokenella regensburgei ATCC 43003]
Length = 317
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|257454043|ref|ZP_05619317.1| ribosomal large subunit pseudouridine synthase C [Enhydrobacter
aerosaccus SK60]
gi|257448521|gb|EEV23490.1| ribosomal large subunit pseudouridine synthase C [Enhydrobacter
aerosaccus SK60]
Length = 365
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
RI+ E +VL+KP+G +V G + E A R L H+ID T G +
Sbjct: 139 ERIVYEDEGLIVLNKPSGMAVHGGSG--ESFGVIEAMREATGKKYLELVHRIDKDTSGLL 196
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLAL 305
++A+ + +REK ++K YL L
Sbjct: 197 MIAKKRSTLKTLQEHLREKTLQKTYLCL 224
>gi|410637062|ref|ZP_11347650.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
gi|410143441|dbj|GAC14855.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
Length = 319
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTH 267
+A ESH+ V++KP+G +V G S +F A RAL T L H
Sbjct: 89 VATLESHILFEDDVLIVVNKPSGMAVHGG------SGLSFGVIEALRALRPTAKFLELVH 142
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++D T GC+++A+ + H ++R K V K Y AL P
Sbjct: 143 RLDRDTSGCLLIAKKRSALKHLHEQLRNKTVDKRYQALVHGHWP 186
>gi|378767710|ref|YP_005196179.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis LMG 5342]
gi|365187192|emb|CCF10142.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis LMG 5342]
Length = 318
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + + I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLAKVASLANAILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ + H ++REK ++K YLAL P
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWP 185
>gi|269219521|ref|ZP_06163375.1| ribosomal large subunit pseudouridine synthase D [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211100|gb|EEZ77440.1| ribosomal large subunit pseudouridine synthase D [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 309
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIE--ESCATFASRALGLTT--PLR---TTHQIDNCTEGCV 277
E VV+DKPAG + + N E + T + + LTT P H++D T GC+
Sbjct: 87 EDVVVVDKPAGMAAHPSL-NFEGPDVLGTLMAEGVKLTTHGPQERKGIVHRLDVGTTGCM 145
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
V+A+++ S R R++ V+K+Y AL
Sbjct: 146 VVAKSEAAYSALKRAFRDRAVEKVYHALVQG 176
>gi|229095877|ref|ZP_04226855.1| Pseudouridine synthase [Bacillus cereus Rock3-29]
gi|229114830|ref|ZP_04244243.1| Pseudouridine synthase [Bacillus cereus Rock1-3]
gi|423380807|ref|ZP_17358091.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|423443839|ref|ZP_17420745.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|423466931|ref|ZP_17443699.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|423536327|ref|ZP_17512745.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
gi|423538428|ref|ZP_17514819.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|423544667|ref|ZP_17521025.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|423625627|ref|ZP_17601405.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|228668522|gb|EEL23951.1| Pseudouridine synthase [Bacillus cereus Rock1-3]
gi|228687501|gb|EEL41401.1| Pseudouridine synthase [Bacillus cereus Rock3-29]
gi|401177012|gb|EJQ84204.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|401183642|gb|EJQ90754.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|401254465|gb|EJR60694.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|401631559|gb|EJS49356.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|402411971|gb|EJV44333.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|402414735|gb|EJV47062.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|402461164|gb|EJV92878.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
Length = 307
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G +VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKFQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEG 178
>gi|108758129|ref|YP_629362.1| RNA pseudouridine synthase [Myxococcus xanthus DK 1622]
gi|108462009|gb|ABF87194.1| RNA pseudouridine synthase family protein [Myxococcus xanthus DK
1622]
Length = 329
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
P P + DW +VLDKPAG + T + + T G
Sbjct: 85 PTELPVVFQDDWL----------LVLDKPAGLPIHPTARYHKGTLVTLLRERFGERF-AE 133
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
H++D T G VV RT E C + R + V K YLAL P T
Sbjct: 134 PAHRLDRETSGLVVCGRTTESCRVLGRLFVSRDVHKEYLALCEGHPPEDTFT 185
>gi|241763829|ref|ZP_04761874.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
gi|241366873|gb|EER61287.1| pseudouridine synthase, RluA family [Acidovorax delafieldii 2AN]
Length = 336
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 221 IAVTESHVV-LDKPAGTSVGGTTDN----IEE-SCATFASRALGLTTPLRTTHQIDNCTE 274
+ + + HV+ LDKPAG +V G + IE+ A A+R L L H++D T
Sbjct: 106 VLLEDEHVIALDKPAGVAVHGGSGVSFGVIEQLRQARPAARFLELV------HRLDRETS 159
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+ + + + RE++ K YLAL T P
Sbjct: 160 GILLVAKKRSALTHLQDQFRERETGKTYLALVTGDWP 196
>gi|389841401|ref|YP_006343485.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii ES15]
gi|387851877|gb|AFJ99974.1| 23S rRNA pseudouridylate synthase C [Cronobacter sakazakii ES15]
Length = 317
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|386079863|ref|YP_005993388.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis PA13]
gi|354989044|gb|AER33168.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis PA13]
Length = 318
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + + I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLAKVASLANAILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ + H ++REK ++K YLAL P
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWP 185
>gi|336249748|ref|YP_004593458.1| 23S rRNA pseudouridylate synthase C [Enterobacter aerogenes KCTC
2190]
gi|334735804|gb|AEG98179.1| 23S rRNA pseudouridylate synthase C [Enterobacter aerogenes KCTC
2190]
Length = 317
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|310643591|ref|YP_003948349.1| pseudouridine synthase [Paenibacillus polymyxa SC2]
gi|309248541|gb|ADO58108.1| Pseudouridine synthase, RluA family [Paenibacillus polymyxa SC2]
gi|392304341|emb|CCI70704.1| RNA pseudouridylate synthase [Paenibacillus polymyxa M1]
Length = 303
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 185 RITHVDQIVEAGTYLRVHVHP----KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H I G LR+ + P PR YD+ +I+ + +V+ KPAG +V
Sbjct: 49 RLRHEKGIELTGDRLRLALFPVVDLGVIPRWYDL----KILYEDDFCLVVHKPAGMAVHP 104
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
GG D+ ++ + A++ + T +R H++D T G V+ A+ + ++R
Sbjct: 105 DGGVKDSPLTLDHAVASYYE-INDIHTAVRHVHRLDVDTTGPVLYAKNEFALLKLDEQMR 163
Query: 295 EKKVKKLYLALTTAPLPVGIMT 316
K + + Y+AL +P + T
Sbjct: 164 AKDIGRRYVALVRGKVPPSLRT 185
>gi|316931819|ref|YP_004106801.1| pseudouridine synthase [Rhodopseudomonas palustris DX-1]
gi|315599533|gb|ADU42068.1| pseudouridine synthase [Rhodopseudomonas palustris DX-1]
Length = 300
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 204 HPKRF--PRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTT 261
HP +F P + +R++ +V+DKP G V A+F + GL
Sbjct: 5 HPDQFDVPELTADEIQARVLYRDGLMLVIDKPPGLPVHRGPKGGPNLEASFDALRYGLPR 64
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
P H++D T GC+VL R ++ + + ++ K Y A+
Sbjct: 65 PPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSRISKTYWAIVEG 111
>gi|312114370|ref|YP_004011966.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219499|gb|ADP70867.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 326
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSVGG---TTDNIEESCATFASRALGLTTPLRTTHQ 268
D D+ R+I + +L+KP G +V G TT +I+ A A R G P R H+
Sbjct: 88 DRDFIERMIVFENDEMFILNKPFGIAVQGGTKTTRHIDGLLAGMADR-FGGERP-RLVHR 145
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+D T G + +A+ ++ + R + + V+K+Y A+T
Sbjct: 146 LDRDTTGILAVAKDRQTAARLGRLFQTRSVQKIYWAIT 183
>gi|254436973|ref|ZP_05050467.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198252419|gb|EDY76733.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 347
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ HV+ L+KPAG G + + + G R H++D T G ++LART+
Sbjct: 96 DDHVIALNKPAGLPTQGGSKQLRHVDGMAEALRFGYDEKPRLVHRLDKDTSGVLILARTR 155
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA-PLP 311
R + +K+Y AL P+P
Sbjct: 156 MAAKSLTDAFRHRNTEKIYWALVAGVPIP 184
>gi|187924897|ref|YP_001896539.1| pseudouridine synthase [Burkholderia phytofirmans PsJN]
gi|187716091|gb|ACD17315.1| pseudouridine synthase, RluA family [Burkholderia phytofirmans
PsJN]
Length = 341
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 100 KIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 158
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE K+ K Y A
Sbjct: 159 LAKKRSALVNLHEQIRENKMDKRYYA 184
>gi|407716439|ref|YP_006837719.1| ribosomal large subunit pseudouridine synthase C [Cycloclasticus
sp. P1]
gi|407256775|gb|AFT67216.1| ribosomal large subunit pseudouridine synthase C [Cycloclasticus
sp. P1]
Length = 312
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCT 273
R+I E +VL+KP+G +V G T N T L P L H++D T
Sbjct: 92 ERVIYEDEHLLVLNKPSGMAVHGGTANSHGVIET-----LRFLRPEERYLELVHRLDKAT 146
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
GC+++A+ ++ + +R + + K Y AL
Sbjct: 147 SGCLLIAKNRKMLNGLQSLLRNRTISKTYTAL 178
>gi|28898835|ref|NP_798440.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839692|ref|ZP_01992359.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AQ3810]
gi|260361710|ref|ZP_05774737.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus K5030]
gi|260879491|ref|ZP_05891846.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AN-5034]
gi|260898210|ref|ZP_05906706.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus Peru-466]
gi|417319416|ref|ZP_12105974.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 10329]
gi|34395766|sp|Q87N15.1|RLUC_VIBPA RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|28807054|dbj|BAC60324.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio parahaemolyticus
RIMD 2210633]
gi|149746785|gb|EDM57773.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AQ3810]
gi|308088378|gb|EFO38073.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus Peru-466]
gi|308093528|gb|EFO43223.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus AN-5034]
gi|308111282|gb|EFO48822.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus K5030]
gi|328474606|gb|EGF45411.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 10329]
Length = 315
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|427417791|ref|ZP_18907974.1| 23S RNA-specific pseudouridylate synthase [Leptolyngbya sp. PCC
7375]
gi|425760504|gb|EKV01357.1| 23S RNA-specific pseudouridylate synthase [Leptolyngbya sp. PCC
7375]
Length = 546
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V+DKPAG SV G N+++S T L L+ H++D T G +VLA++
Sbjct: 350 MVVDKPAGLLSVPGRRHNLQDSVLTRLRYQLKDYNFLQVVHRLDQATSGILVLAKSPSAH 409
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ + +V K Y A+ + P+
Sbjct: 410 KELGRQFAKHQVHKTYEAVLSCPV 433
>gi|89900510|ref|YP_522981.1| pseudouridine synthase RluD [Rhodoferax ferrireducens T118]
gi|89345247|gb|ABD69450.1| Pseudouridine synthase, RluD [Rhodoferax ferrireducens T118]
Length = 346
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 174 GKTVREAQKTFRITH-VDQIVEAGTYLRVHVHPKR-FPRCYDIDWNSRIIAVTESHVVLD 231
G TVR RI+ V + EA T H P R FP I+ E +V+D
Sbjct: 71 GDTVR--LPPLRISERVAEKAEAMTQAMAHGAPARDFP----------ILFEDEQLLVID 118
Query: 232 KPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLARTQEYC 286
KPAG +V G S +F L + P L H++D T G +++A+ +
Sbjct: 119 KPAGVAVHGG------SGVSFGVIEQLRMARPEAKFLELVHRLDRDTSGILLIAKKRSAL 172
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPV 312
+ + RE++ K YLAL P
Sbjct: 173 TRLQSQFRERETGKTYLALVAGHWPA 198
>gi|228907022|ref|ZP_04070887.1| Pseudouridine synthase [Bacillus thuringiensis IBL 200]
gi|228852613|gb|EEM97402.1| Pseudouridine synthase [Bacillus thuringiensis IBL 200]
Length = 307
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ L+VH V+P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEEEYGVNPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGNGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|229101991|ref|ZP_04232704.1| Pseudouridine synthase [Bacillus cereus Rock3-28]
gi|228681378|gb|EEL35542.1| Pseudouridine synthase [Bacillus cereus Rock3-28]
Length = 307
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G +VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKFQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEG 178
>gi|114331690|ref|YP_747912.1| RluA family pseudouridine synthase [Nitrosomonas eutropha C91]
gi|114308704|gb|ABI59947.1| ribosomal large subunit pseudouridine synthase C [Nitrosomonas
eutropha C91]
Length = 354
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KPAGT+V G + I + L H++D T G ++LAR ++
Sbjct: 126 LVINKPAGTAVHGGS-GISYGVIEQLRKQRPDWKFLELVHRLDRETSGVLLLARKRQTLL 184
Query: 288 IFHRKIREKKVKKLYLALTTA 308
H++IRE V+K YL L
Sbjct: 185 ELHKQIREGTVRKHYLTLVRG 205
>gi|333398423|ref|ZP_08480236.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum KCTC 3527]
gi|406600756|ref|YP_006746102.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum JB7]
gi|406372291|gb|AFS41216.1| ribosomal large subunit pseudouridine synthase A [Leuconostoc
gelidum JB7]
Length = 306
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVG--GTTDN---IEESCATFASRAL---GLTTPLRTTHQIDN 271
I+ +E V+++KPAG + T+N + A F+ R L G+ H++D
Sbjct: 88 IVFESEDFVIVNKPAGMKMHPHSLTENDTLLNYLAADFSERRLVSAGVAARPYMVHRLDR 147
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
T G V++A+ I +R + +KK+K+ YLA +
Sbjct: 148 ETSGAVIVAKNPIIVPILNRMLADKKIKRTYLAWVNGKM 186
>gi|386015417|ref|YP_005933698.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis AJ13355]
gi|327393480|dbj|BAK10902.1| ribosomal large subunit pseudouridine synthase C RluC [Pantoea
ananatis AJ13355]
Length = 318
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFAS----RALGLTTP- 262
P+ + + I + H+ VL+KP+GT+V G S +F RAL +
Sbjct: 83 PKLAKVASLANAILFEDDHLLVLNKPSGTAVHGG------SGLSFGVIEGLRALRPESRF 136
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
L H++D T G +++A+ + H ++REK ++K YLAL P
Sbjct: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWP 185
>gi|284030831|ref|YP_003380762.1| pseudouridine synthase, RluA family [Kribbella flavida DSM 17836]
gi|283810124|gb|ADB31963.1| pseudouridine synthase, RluA family [Kribbella flavida DSM 17836]
Length = 309
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV------GGTTDNIEESCATFASRALGLTTPLRTTHQID 270
N RI+ + VV+DKP G + G T + A F+ G H++D
Sbjct: 81 NLRIVHDDDEIVVVDKPVGVAAHPSPGWTGPTVIGHLAGAGFSISTSGAAERKGIVHRLD 140
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T G +V+A+T+ ++ R +E+ VKK+Y AL
Sbjct: 141 VGTSGLMVVAKTEYSYTVLKRAFKERTVKKIYHAL 175
>gi|115522347|ref|YP_779258.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
gi|115516294|gb|ABJ04278.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
Length = 278
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+R++ +V+DKPAG V GG N+E S F + GL P H++D
Sbjct: 20 ARVLHRDGLMLVIDKPAGLPVHRGPKGGA--NLESS---FDALCYGLPRPPVLAHRLDRD 74
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GC+VL R ++ + + K+ K Y A+
Sbjct: 75 TSGCLVLGRHRKATATLGLLFKHGKISKTYWAVVEG 110
>gi|419839851|ref|ZP_14363252.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
haemolyticus HK386]
gi|386908953|gb|EIJ73637.1| pseudouridine synthase Rlu family protein, TIGR01621 [Haemophilus
haemolyticus HK386]
Length = 224
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTVLVAKQLNVPK-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|333375468|ref|ZP_08467276.1| tRNA pseudouridine synthase C [Kingella kingae ATCC 23330]
gi|332970317|gb|EGK09309.1| tRNA pseudouridine synthase C [Kingella kingae ATCC 23330]
Length = 252
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ TE +VV++KPAG V + + +E+ + L + H++D T G ++
Sbjct: 4 ILTQTEHYVVVNKPAGMLVHRSRLDSQETVFLMQTLRDQLGQLVYPVHRLDKPTSGAMLW 63
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A E F ++ +K+++K YLA+
Sbjct: 64 ALNSEAARWFTQQFEQKQIRKHYLAI 89
>gi|261367348|ref|ZP_05980231.1| ribosomal large subunit pseudouridine synthase D [Subdoligranulum
variabile DSM 15176]
gi|282570108|gb|EFB75643.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 299
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 175 KTVREAQKTF----RITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL 230
K+V+ + F + H DQ V AG + + P+ I+ E VL
Sbjct: 31 KSVKHTGQGFFADGQALHTDQKVHAGQCITFALPPEPATSVIPQPIPLSIVYEDEFAAVL 90
Query: 231 DKPAGTSVGGTTDNIEESCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
DKPAG +V T + + + A + ++ G R ++ID T G V+ A+ +
Sbjct: 91 DKPAGLAVHPTLNYPDHTLANGWIYYLQSQGKNGVFRPVNRIDKNTSGLVLCAQ-----N 145
Query: 288 IFHRKIREKKVKKLYLALTTAPLPVG 313
F + + KK YLA+ LP+G
Sbjct: 146 AFAAPLLAGQAKKCYLAIVQGSLPLG 171
>gi|432893793|ref|ZP_20105805.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE165]
gi|431424773|gb|ELH06869.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE165]
Length = 319
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRQEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|424033462|ref|ZP_17772876.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-01]
gi|408874711|gb|EKM13879.1| pseudouridine synthase, RluA family protein [Vibrio cholerae
HENC-01]
Length = 314
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIFEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|229043131|ref|ZP_04190856.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|423643563|ref|ZP_17619181.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|423647320|ref|ZP_17622890.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
gi|228726190|gb|EEL77422.1| Pseudouridine synthase [Bacillus cereus AH676]
gi|401274143|gb|EJR80121.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|401286138|gb|EJR91971.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
Length = 307
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
SI R + E+K+K+ Y AL +
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKV 180
>gi|254508499|ref|ZP_05120618.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 16]
gi|219548611|gb|EED25617.1| ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus 16]
Length = 314
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPKARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|206977555|ref|ZP_03238449.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|217958867|ref|YP_002337415.1| RluA family ribosomal large subunit pseudouridine synthase
[Bacillus cereus AH187]
gi|222095026|ref|YP_002529086.1| ribosomal large subunit pseudouridine synthase d [Bacillus cereus
Q1]
gi|229138078|ref|ZP_04266676.1| Pseudouridine synthase [Bacillus cereus BDRD-ST26]
gi|375283362|ref|YP_005103800.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|423354125|ref|ZP_17331751.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|423371373|ref|ZP_17348713.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
gi|423569692|ref|ZP_17545938.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
gi|206744273|gb|EDZ55686.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|217063723|gb|ACJ77973.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH187]
gi|221239084|gb|ACM11794.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
Q1]
gi|228645423|gb|EEL01657.1| Pseudouridine synthase [Bacillus cereus BDRD-ST26]
gi|358351888|dbj|BAL17060.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|401087835|gb|EJP96035.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|401103199|gb|EJQ11184.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
gi|401205911|gb|EJR12709.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
Length = 307
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELHVVYEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|30019444|ref|NP_831075.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|229126707|ref|ZP_04255719.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
gi|229143996|ref|ZP_04272412.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|29894988|gb|AAP08276.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|228639393|gb|EEK95807.1| Pseudouridine synthase [Bacillus cereus BDRD-ST24]
gi|228656647|gb|EEL12473.1| Pseudouridine synthase [Bacillus cereus BDRD-Cer4]
Length = 307
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
SI R + E+K+K+ Y AL +
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKV 180
>gi|420335389|ref|ZP_14836998.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-315]
gi|391265470|gb|EIQ24439.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-315]
Length = 319
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTE 274
+I + H+ VL+KP+GT+V G + S + L P L H++D T
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGS-----SLSFGVIEGLRALRPEARFLELVHRLDRDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK ++K YLAL
Sbjct: 149 GVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|334143797|ref|YP_004536953.1| pseudouridine synthase Rlu family protein [Thioalkalimicrobium
cyclicum ALM1]
gi|333964708|gb|AEG31474.1| pseudouridine synthase Rlu family protein, TIGR01621
[Thioalkalimicrobium cyclicum ALM1]
Length = 225
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 228 VVLDKPAGTSVGGTTD-----NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
VV+DKPAG S T+ +E+ L L H++D T G VVLA++
Sbjct: 15 VVIDKPAGISFHSETEPGLVVRVEQQ----------LNHQLYPVHRLDKMTSGLVVLAKS 64
Query: 283 QEYCSIFHRKIREKKVKKLYLALTT 307
E F + ++K YLA++T
Sbjct: 65 VEVARHFQPLFENRDIEKYYLAIST 89
>gi|399036575|ref|ZP_10733609.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398065903|gb|EJL57515.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 316
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V G T NI++ + S R H++D T G +V+ART+
Sbjct: 89 IVLNKPAGLAVQGGSGVTRNIDKMLEAWTSPK---GEKPRLVHRLDRDTSGVLVIARTRG 145
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
RE+ KK Y +L
Sbjct: 146 AAQKLTAAFRERDTKKTYWSL 166
>gi|86739288|ref|YP_479688.1| pseudouridine synthase [Frankia sp. CcI3]
gi|86566150|gb|ABD09959.1| pseudouridine synthase [Frankia sp. CcI3]
Length = 304
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I E+ +VLDKP G SV G E + A L H+ID T G V+
Sbjct: 1 MIYEDEAILVLDKPVGISVMG-----ERHDTDLVTLAGDDGEELFPVHRIDKVTSGLVLF 55
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT 306
AR + R+ + + V K YL LT
Sbjct: 56 ARQLRFHGDLTRQFQRRTVDKRYLVLT 82
>gi|30249427|ref|NP_841497.1| rluC; ribosomal large subunit pseudouridine synthase C
[Nitrosomonas europaea ATCC 19718]
gi|30138790|emb|CAD85367.1| rluC; ribosomal large subunit pseudouridine synthase C
[Nitrosomonas europaea ATCC 19718]
Length = 343
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTD----NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+V+DKPAG +V G + IE+ L H++D T G ++LAR +
Sbjct: 115 LVIDKPAGIAVHGGSGISHGVIEQLRGQHPDWKF-----LELVHRLDRETSGILLLARKR 169
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ HR+IRE V+K YL L
Sbjct: 170 QSLLELHRQIREGTVEKHYLTLVRG 194
>gi|383812807|ref|ZP_09968234.1| pseudouridine synthase [Serratia sp. M24T3]
gi|383298217|gb|EIC86524.1| pseudouridine synthase [Serratia sp. M24T3]
Length = 228
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
ID R++ E +V++KP+G SV G +S T R + + H++D
Sbjct: 19 IDPWLRVLFQDEHLMVVNKPSGLLSVPGKAAEHHDSLMTRVQRDFPIA---ESVHRLDLS 75
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
T G + +A T+E R+ RE++ KK Y+A
Sbjct: 76 TSGVIAIALTKEAERELKRQFRERETKKAYVA 107
>gi|339477857|ref|YP_004706677.1| putative pseudouridine synthase, RluA family [Candidatus Moranella
endobia PCIT]
gi|338172408|gb|AEI74809.1| putative pseudouridine synthase, RluA family [Candidatus Moranella
endobia PCIT]
Length = 322
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
N ++ + ++L+KPAGT+V G + + E AL L H++D T
Sbjct: 92 NDAVLYEDDYLLILNKPAGTAVHGGSGLSFGVIEGLRALRPNALFLEL----VHRLDRDT 147
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
G +++A+ H ++R K ++K YLAL + I T
Sbjct: 148 SGVLLIAKKHSALRSLHTQLRTKGIQKDYLALVRSKWKSNIKT 190
>gi|158424148|ref|YP_001525440.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158331037|dbj|BAF88522.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 384
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF-ASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + A RA P R H+ID T GC+++A+ +
Sbjct: 156 LVLNKPSGIAVQGGSGTFRHIDGMLDALRAKDGQKP-RLVHRIDKDTAGCLLIAKNRLSA 214
Query: 287 SIFHRKIREKKVKKLYLAL 305
+ + R ++ +K+Y AL
Sbjct: 215 AQLAKNFRSREARKIYWAL 233
>gi|406984445|gb|EKE05460.1| hypothetical protein ACD_19C00284G0002 [uncultured bacterium]
Length = 247
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 228 VVLDKPAGTSVGGT---TDNIEESCATFASRALGLTTPLRT-------THQIDNCTEGCV 277
VVLDKPAG + DNI S L T H++D T G +
Sbjct: 18 VVLDKPAGLVINAAETQKDNITLQDLIAVSDLLEEDTEYSEFRDRSGIVHRLDKDTSGII 77
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA---PLPVGIMTHYMRPINIAPR 327
++A+T+E + + +KV K+YLAL L VG PI P+
Sbjct: 78 IVAKTRESFENLQEQFKSRKVHKVYLALVYGVIKDLTVGETFEINAPIGRNPK 130
>gi|423654172|ref|ZP_17629471.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
gi|401296639|gb|EJS02256.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
Length = 307
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
SI R + E+K+K+ Y AL +
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKV 180
>gi|456063770|ref|YP_007502740.1| Pseudouridine synthase [beta proteobacterium CB]
gi|455441067|gb|AGG34005.1| Pseudouridine synthase [beta proteobacterium CB]
Length = 339
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ E+ ++++KPAG +V G + A L +T P L H++D T G
Sbjct: 112 ILFEDEALLIVNKPAGLAVHGGS-----GIALGVIETLRITRPELKFLELVHRLDRDTSG 166
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR 320
++LA+ + HR+IRE + K Y L + G T ++
Sbjct: 167 VLLLAKKRSALVELHRQIREGQTDKRYYLLAHGEIAQGAGTMQLK 211
>gi|291617029|ref|YP_003519771.1| RluC [Pantoea ananatis LMG 20103]
gi|291152059|gb|ADD76643.1| RluC [Pantoea ananatis LMG 20103]
Length = 318
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + + I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLAKVASLANAILFEDDHLLVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ + H ++REK ++K YLAL P
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWP 185
>gi|329120429|ref|ZP_08249095.1| ribosomal large subunit pseudouridine synthase C [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462113|gb|EGF08441.1| ribosomal large subunit pseudouridine synthase C [Neisseria
bacilliformis ATCC BAA-1200]
Length = 435
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V+DKPAG +V G + + RA L H++D T G +++
Sbjct: 198 IVYEDDALLVIDKPAGVAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 256
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A+ + H IR KK+YLAL L
Sbjct: 257 AKKRSALVKLHEAIRNDHPKKIYLALGAGRL 287
>gi|323495017|ref|ZP_08100106.1| ribosomal large subunit pseudouridine synthase C [Vibrio
brasiliensis LMG 20546]
gi|323310674|gb|EGA63849.1| ribosomal large subunit pseudouridine synthase C [Vibrio
brasiliensis LMG 20546]
Length = 319
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPEARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|304413613|ref|ZP_07395057.1| 23S rRNA pseudouridylate synthase [Candidatus Regiella insecticola
LSR1]
gi|304283704|gb|EFL92098.1| 23S rRNA pseudouridylate synthase [Candidatus Regiella insecticola
LSR1]
Length = 294
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ ++ ++L+KP G +V G + + A RAL L H++D T G
Sbjct: 68 DRILFEDDALLILNKPFGIAVHGGSG--VDFGVIEALRALRPEARFLELVHRLDRDTSGV 125
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++R KK++K YLAL APL ++ + R + ++
Sbjct: 126 LLIAKKRSALRALHEQLRLKKIQKDYLALVKGHWPSSCKKVQAPLLKNVLQNGGRVVKVS 185
Query: 326 PRLVSEGKT 334
SEGK
Sbjct: 186 ----SEGKV 190
>gi|433658162|ref|YP_007275541.1| Ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus BB22OP]
gi|432508850|gb|AGB10367.1| Ribosomal large subunit pseudouridine synthase C [Vibrio
parahaemolyticus BB22OP]
Length = 315
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIYEDDYMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK VKK Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVKKFYFALVMG 183
>gi|420143547|ref|ZP_14651044.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391856418|gb|EIT66958.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 289
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E V+++KP G G T E A A L P+ H++D T G V+
Sbjct: 83 ILYEDEHLVIVNKPEGMKTHGNT---PEEIALQNHVAARLNLPVHVVHRLDKETSGAVLF 139
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A+ Q I + E K+ + YLA+
Sbjct: 140 AKNQFILPILGQMFEENKIHRSYLAV 165
>gi|296501973|ref|YP_003663673.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|296323025|gb|ADH05953.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
Length = 307
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
SI R + E+K+K+ Y AL +
Sbjct: 157 SIMDRLLMERKIKRTYAALVEGKV 180
>gi|365106029|ref|ZP_09334959.1| ribosomal large subunit pseudouridine synthase C [Citrobacter
freundii 4_7_47CFAA]
gi|363642725|gb|EHL82068.1| ribosomal large subunit pseudouridine synthase C [Citrobacter
freundii 4_7_47CFAA]
Length = 331
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PNLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|349575682|ref|ZP_08887589.1| ribosomal large subunit pseudouridine synthase C [Neisseria
shayeganii 871]
gi|348012691|gb|EGY51631.1| ribosomal large subunit pseudouridine synthase C [Neisseria
shayeganii 871]
Length = 338
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP G +V G + + RA L H++D T G +++A+ +
Sbjct: 112 LVINKPGGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDRDTSGLLMIAKKRSALV 170
Query: 288 IFHRKIREKKVKKLYLALTTAPLPV 312
H +R+ KK+YLAL P P
Sbjct: 171 RLHEALRQDHPKKIYLALGVGPWPA 195
>gi|336450813|ref|ZP_08621260.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
gi|336282636|gb|EGN75868.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
Length = 321
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
I+ + VV++KPAG +V G + + RAL T L H++D T G ++
Sbjct: 94 IVFEDDYMVVVNKPAGMAVHGGSG--LQYGLIEGLRALRPTAKFLELVHRLDRDTSGLLM 151
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+A+ + H ++REK + K Y+AL P I
Sbjct: 152 VAKKRSALRALHEQLREKDMDKTYIALVFGSWPGKI 187
>gi|448511828|ref|XP_003866624.1| hypothetical protein CORT_0A07990 [Candida orthopsilosis Co 90-125]
gi|380350962|emb|CCG21185.1| hypothetical protein CORT_0A07990 [Candida orthopsilosis Co 90-125]
Length = 404
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 214 IDWNSRIIAVTESH--VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDN 271
I W +I + E +V++KP+G + + S + G + + T H++D
Sbjct: 100 IPWQEKIPILYEDEEIIVVNKPSGVPTHPSGNYSHNSLSEIVKEMYGFDS-IWTCHRLDK 158
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKK--VKKLYLALTTAPLPVG 313
T G ++L ++++ F ++ KK VKK+YLA P G
Sbjct: 159 VTSGVLILCKSRDSAIKFSNLLQAKKNRVKKVYLARVKGEFPSG 202
>gi|311280008|ref|YP_003942239.1| RluA family pseudouridine synthase [Enterobacter cloacae SCF1]
gi|308749203|gb|ADO48955.1| pseudouridine synthase, RluA family [Enterobacter cloacae SCF1]
Length = 341
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 109 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 164
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++R+K ++K YLAL APL
Sbjct: 165 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLKN 224
Query: 314 IMTHYMRPINIAPRLVSEGK 333
I+ R + R+ SEGK
Sbjct: 225 ILQSGERIV----RVSSEGK 240
>gi|182680419|ref|YP_001834565.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636302|gb|ACB97076.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 234
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D +R++ +VLDKPAG V GG DN+E A F GL H+
Sbjct: 4 FDLQARLLYRDGMMLVLDKPAGIPVHKGPKGG--DNLE---AFFDDLRFGLPRRPALAHR 58
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+D T GC+VL R + ++ K+ K Y ++
Sbjct: 59 LDRDTSGCLVLGRHHKALEKLGLLFKQGKIAKTYWSV 95
>gi|49477179|ref|YP_035519.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49328735|gb|AAT59381.1| ribosomal large subunit pseudouridylate synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 307
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + ++ ++ G L+VH+ YD++ + + + HV +
Sbjct: 45 KGVTVNGEQRRW-----NERLKEGDKLQVHMF---MEEEYDVEPEYGELHVVYEDDHVLI 96
Query: 230 LDKPAGTSVG-------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++KP GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPSEKGGMGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|356495831|ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
max]
Length = 427
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRAL--GLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+VL+KP G V G NI+ S A+ +L G + P R H++D G +V+ RT
Sbjct: 147 LVLNKPPGMPVQGGI-NIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTS 205
Query: 286 CSIFHRKIREK 296
++ H REK
Sbjct: 206 TTVLHSIFREK 216
>gi|381401004|ref|ZP_09925922.1| tRNA pseudouridine synthase C [Kingella kingae PYKK081]
gi|380833929|gb|EIC13779.1| tRNA pseudouridine synthase C [Kingella kingae PYKK081]
Length = 252
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ TE +VV++KPAG V + + +E+ + L + H++D T G ++
Sbjct: 4 ILTQTEHYVVVNKPAGMLVHRSRLDSQETVFLMQTLRDQLGQLVYPVHRLDKPTSGAMLW 63
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A E F ++ +K+++K YLA+
Sbjct: 64 ALNSEAARWFTQQFEQKQIRKHYLAI 89
>gi|152974818|ref|YP_001374335.1| RluA family pseudouridine synthase [Bacillus cytotoxicus NVH
391-98]
gi|152023570|gb|ABS21340.1| pseudouridine synthase, RluA family [Bacillus cytotoxicus NVH
391-98]
Length = 307
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 191 QIVEAGTYLRVHVHPKRFPRCYDI--DWNSRIIAVTESHV-VLDKPAGTSVGGTTDNIEE 247
++++ G L+VH+ P Y + ++ + + HV +++KP + N
Sbjct: 58 ELLKEGDKLQVHMF---IPEEYGVIPEFGELDVVFEDDHVLIVNKPEQMDTHPSEKNGTG 114
Query: 248 SCAT---FASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ A F + GL T +R H++D T G VV A+ + +I + + E+ +K+ Y+A
Sbjct: 115 TLANLIAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRLAGAIMDQLLMERNIKRTYMA 174
Query: 305 LTTAPL 310
L +
Sbjct: 175 LVEGKM 180
>gi|387197900|gb|AFJ68826.1| ribosomal large subunit pseudouridine synthase a, partial
[Nannochloropsis gaditana CCMP526]
Length = 292
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 195 AGTYLRVHVHPKRFPRCYD--IDWNSRIIAVTESHVV-----LDKPAGTSVGGTTDNIEE 247
A + + H PR +DW R + +V L++ G D+++
Sbjct: 118 AQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQ- 176
Query: 248 SCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
+R L + ++T H++D T G VLART E + REK+V K Y+AL
Sbjct: 177 ------TRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVD 230
Query: 308 APL 310
+ L
Sbjct: 231 SNL 233
>gi|339999025|ref|YP_004729908.1| ribosomal large subunit pseudouridine synthase C [Salmonella
bongori NCTC 12419]
gi|339512386|emb|CCC30122.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella bongori NCTC 12419]
Length = 317
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E +A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPQA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|195578233|ref|XP_002078970.1| GD22253 [Drosophila simulans]
gi|194190979|gb|EDX04555.1| GD22253 [Drosophila simulans]
Length = 555
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 193 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 251
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 252 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 288
>gi|404447695|ref|ZP_11012689.1| pseudouridylate synthase [Indibacter alkaliphilus LW1]
gi|403766281|gb|EJZ27153.1| pseudouridylate synthase [Indibacter alkaliphilus LW1]
Length = 236
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT--THQIDNCTEGCV 277
+I E ++++DKPAG V T+ EE A + L R H+ID T G +
Sbjct: 7 VIYEDEDYIIIDKPAGVLVHKTSIAKEEQ-KLIAVQILRDQIGCRVYPLHRIDRPTTGIL 65
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
V A++ E +F VKK YLA+ +P
Sbjct: 66 VFAKSSEAAGLFQPLFPTDAVKKKYLAVVRGFMP 99
>gi|417850958|ref|ZP_12496770.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338220192|gb|EGP05741.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 311
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDN--IEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V GG+ N + E+ T A L H++D T
Sbjct: 83 EKQILFEDECLLVLNKPSGIAVHGGSGLNFGVIEALRTLRPDA----RFLELVHRLDRDT 138
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 139 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 170
>gi|410865861|ref|YP_006980472.1| Pseudouridine synthase [Propionibacterium acidipropionici ATCC
4875]
gi|410822502|gb|AFV89117.1| Pseudouridine synthase [Propionibacterium acidipropionici ATCC
4875]
Length = 315
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 228 VVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
VV+DKPAG S+G ++ E + A F+ G ++D T G +V+A+
Sbjct: 90 VVVDKPAGVAAHPSLGWDGPSVVEHLAAAGFSISTSGAAERRGIVQRLDVGTSGLMVVAK 149
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTA 308
++ ++ R RE+ V K+YLAL
Sbjct: 150 SERAYTLLKRAFRERTVDKIYLALVQG 176
>gi|347531664|ref|YP_004838427.1| pseudouridine synthase [Roseburia hominis A2-183]
gi|345501812|gb|AEN96495.1| pseudouridine synthase [Roseburia hominis A2-183]
Length = 313
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 188 HVDQIVEAGTYLRVH---------VHPKRFPR--CYDIDWNSRIIAVTESHVVLDKPAGT 236
H+++ + G L +H + P++ P CY+ E +V+DKPAG
Sbjct: 50 HMNETLHTGDLLCLHLEENTSGTSIFPQQIPLAICYE----------DEDLLVIDKPAGM 99
Query: 237 SVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKI 293
V + + ++ A + RA G P R +++D T G +++A+ ++ + +
Sbjct: 100 PVHPSAAHQRDTLANAVTGYYRAKGEIRPFRCINRLDADTSGLIIVAKNMLSAALLGKAM 159
Query: 294 REKKVKKLYLALTTAPL 310
+++ +++ YLA+ L
Sbjct: 160 QQRMIRREYLAVVCGTL 176
>gi|54308380|ref|YP_129400.1| 23S rRNA ribosomal pseudouridinesynthase [Photobacterium profundum
SS9]
gi|46912808|emb|CAG19598.1| putative 23S rRNA ribosomal pseudouridinesynthase [Photobacterium
profundum SS9]
Length = 307
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
+I + +VL+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 89 VIYEDDHLLVLNKPSGTAVHGGSG--LKFGAIEALRALRPDARYLELVHRIDRDTSGILL 146
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
+A+ + + REK VKK Y AL
Sbjct: 147 VAKKRSALRKLQEQFREKTVKKYYFAL 173
>gi|405355081|ref|ZP_11024307.1| Ribosomal large subunit pseudouridine synthase D [Chondromyces
apiculatus DSM 436]
gi|397091423|gb|EJJ22225.1| Ribosomal large subunit pseudouridine synthase D [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 322
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTP 262
P P + DW +VLDKPAG + + + + T G P
Sbjct: 85 PTELPVVFQDDWL----------LVLDKPAGLPIHPSARYQKGTLVTLLRERFGERFAEP 134
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
H++D T G VV RT E C + R + V K YLAL P T
Sbjct: 135 ---AHRLDRETSGLVVCGRTTESCRVLGRLFVSRDVHKEYLALCEGHPPEDTFT 185
>gi|347520750|ref|YP_004778321.1| ribosomal large subunit pseudouridine synthase [Lactococcus
garvieae ATCC 49156]
gi|343179318|dbj|BAK57657.1| ribosomal large subunit pseudouridine synthase [Lactococcus
garvieae ATCC 49156]
Length = 278
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E V+++KP G G T E A A L P+ H++D T G V+
Sbjct: 83 ILYEDEHLVIVNKPEGMKTHGNT---AEEIALQNHVAARLNLPVYVVHRLDKETSGAVLF 139
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A+ Q I + E K+ + YLA+
Sbjct: 140 AKNQFILPILGQMFEENKIHRSYLAV 165
>gi|197104730|ref|YP_002130107.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
gi|196478150|gb|ACG77678.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 228 VVLDKPAG-TSVGG--TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ L+KPAG +S GG + ++E FA G P R H++D T G ++ A+T+
Sbjct: 29 LALNKPAGLSSQGGRGQVNTLDELLWAFAKP--GKARP-RLIHRLDRDTSGVILTAKTKP 85
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPRLVSEGKTIF 336
+ + ++ K YLA+ T PV RP+ R V EG+ +
Sbjct: 86 AAGFLGKALMKRAFSKTYLAIVTPGAPVPAKGVIDRPL----RRVEEGREAY 133
>gi|34556591|ref|NP_906406.1| ribosomal pseudouridine synthase [Wolinella succinogenes DSM 1740]
gi|34482305|emb|CAE09306.1| PUTATIVE RIBOSOMAL PSEUDOURIDINE SYNTHASE [Wolinella succinogenes]
Length = 320
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF 252
++ G + V + R ++++ I+ E +VL+KP+G V G E + +
Sbjct: 53 LKGGERIEVEIPLLRENPAMEVEFEVEILHEEEHFIVLNKPSGAVVHGAPSVKEATLVDW 112
Query: 253 -ASRALGLTT-----PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+ + L+T H++D T G +V+A++ E +++EK + + YLA+
Sbjct: 113 LKKKGISLSTLNGEERHGIVHRLDKETSGAIVIAKSNEAHRRLSLQLQEKSMGRYYLAII 172
Query: 307 TAPL 310
PL
Sbjct: 173 DHPL 176
>gi|241758991|ref|ZP_04757103.1| ribosomal large subunit pseudouridine synthase C [Neisseria
flavescens SK114]
gi|241320812|gb|EER57045.1| ribosomal large subunit pseudouridine synthase C [Neisseria
flavescens SK114]
Length = 328
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 190 DQIVEAGTYLRV---HVHPKRFP--------RCYDIDWNSRIIAVTESHVVLDKPAGTSV 238
D ++AG +R+ + K+ P R +DI + ++ +V++KP+G +V
Sbjct: 58 DNRIQAGDTVRIPPIRIAEKQRPSESQAAPAREFDIVYED------DALLVINKPSGIAV 111
Query: 239 GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
G + + RA L H++D T G +++A+ + H IR
Sbjct: 112 HGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMIAKKRSALVKLHEAIRNDHP 170
Query: 299 KKLYLALTTAPLP 311
KK+YLAL LP
Sbjct: 171 KKIYLALGVGRLP 183
>gi|423564311|ref|ZP_17540587.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|401197342|gb|EJR04275.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
Length = 307
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL-- 230
KG TV Q+ + +++++ L+VH+ + D ++ + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELNVVYEDDHVLIVN 98
Query: 231 ------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KLEQMDTHPAEKGGNGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|261405374|ref|YP_003241615.1| RluA family pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|261281837|gb|ACX63808.1| pseudouridine synthase, RluA family [Paenibacillus sp. Y412MC10]
Length = 302
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 175 KTVREAQKTFRITHVDQIVE-AGTYLRVHVHPKRFPRCYDID--WNS-RIIAVTESHVVL 230
+TV +K +R H +Q ++ G LR+ + P R Y I+ W +++ + +V+
Sbjct: 38 ETVGMPEKLYRKLHHEQGIQWRGDRLRLVLFPYR---EYGIEPRWQELQVLYEDDFCLVV 94
Query: 231 DKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+KPAG +V ++ E + + A G+ +R H++D T G V+ A+ EY
Sbjct: 95 NKPAGLAVHPDNESRETTLNHVVAAYYEAEGIHAAVRHIHRLDKDTTGPVLYAKN-EYAQ 153
Query: 288 I-FHRKIREKKVKKLYLALTTA 308
+ +REKK+ ++Y A+
Sbjct: 154 LKLDEAMREKKIVRMYAAIVQG 175
>gi|115375226|ref|ZP_01462492.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310818943|ref|YP_003951301.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115367788|gb|EAU66757.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309392015|gb|ADO69474.1| Pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
Length = 345
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 205 PKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTP 262
P P Y DW +VLDKPAG + T + + + G P
Sbjct: 93 PTELPIVYQDDWL----------LVLDKPAGLPIHPTARYQKGTLVSLLRERFGERFAEP 142
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G VV RT E C + R + V K YLA+
Sbjct: 143 ---AHRLDRETSGLVVCGRTTEACRVLGRLFLSRDVHKEYLAV 182
>gi|165977322|ref|YP_001652915.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165877423|gb|ABY70471.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 321
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|24583445|ref|NP_723592.1| RluA-1, isoform A [Drosophila melanogaster]
gi|24583447|ref|NP_723593.1| RluA-1, isoform B [Drosophila melanogaster]
gi|24583449|ref|NP_723594.1| RluA-1, isoform C [Drosophila melanogaster]
gi|22946167|gb|AAF52959.2| RluA-1, isoform A [Drosophila melanogaster]
gi|22946168|gb|AAF52960.2| RluA-1, isoform B [Drosophila melanogaster]
gi|22946169|gb|AAN10755.1| RluA-1, isoform C [Drosophila melanogaster]
gi|206725570|gb|ACI16540.1| FI04540p [Drosophila melanogaster]
Length = 739
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 378 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 436
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 437 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 473
>gi|410658397|ref|YP_006910768.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
DCA]
gi|410661382|ref|YP_006913753.1| pseudouridine synthase, RluA family [Dehalobacter sp. CF]
gi|409020752|gb|AFV02783.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
DCA]
gi|409023738|gb|AFV05768.1| pseudouridine synthase, RluA family [Dehalobacter sp. CF]
Length = 296
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKRF------PRCYDIDW-NSRIIAVTESHVVLDKPAGTS 237
R ++ + +++G L V V +F P DI + + +I + + +L PAG +
Sbjct: 47 RNAYLQKKIKSGDILDVLVLEDQFFGVKPEPGPIDILFEDPALIILYKPAGMLVHPAGQT 106
Query: 238 VGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKK 297
GGT N A + R G T +R H++D T GCVV A+ S +++++ +
Sbjct: 107 TGGTLANY---LAEYF-RENGETITIRPLHRLDRDTTGCVVFAKDARTQSELEKQLQDGR 162
Query: 298 VKKLYLAL 305
+K+ Y A+
Sbjct: 163 LKRKYYAV 170
>gi|423609805|ref|ZP_17585666.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
gi|401250287|gb|EJR56588.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
Length = 307
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRF----PRCYDID---WNSRIIAVTE 225
KG T+ Q+ + ++++ G L+VH+ + P ++D + +I V +
Sbjct: 45 KGVTINGEQRRW-----SELLKEGDKLQVHMFMEEEYGVEPEYGELDVVFEDDHVIIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 156 GAIMDRLLMERKIKRTYTALVEGKV 180
>gi|419539051|ref|ZP_14078398.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 90-3]
gi|380516284|gb|EIA42421.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 90-3]
Length = 321
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGT--------TDNIEESCATFASRALGLTTPL 263
+DID++ I+ E +VL+KP+ V G D + E T ++ LG
Sbjct: 70 FDIDFDIEILYADEDLLVLNKPSNLVVHGAKSVKSATLVDWLIEKQYTLST--LGGEVRA 127
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ ++ +K + ++YLAL PL
Sbjct: 128 GLVHRLDKETSGAILIAKNNFTHQKLSEQLSDKTMGRIYLALIDLPLK 175
>gi|385832113|ref|YP_005869888.1| ribosomal large subunit pseudouridine synthase [Lactococcus
garvieae Lg2]
gi|343181266|dbj|BAK59604.1| ribosomal large subunit pseudouridine synthase [Lactococcus
garvieae Lg2]
Length = 289
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E V+++KP G G T E A A L P+ H++D T G V+
Sbjct: 83 ILYEDEHLVIVNKPEGMKTHGNT---AEEIALQNHVAARLNLPVYVVHRLDKETSGAVLF 139
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
A+ Q I + E K+ + YLA+
Sbjct: 140 AKNQFILPILGQMFEENKIHRSYLAV 165
>gi|300023017|ref|YP_003755628.1| pseudouridine synthase [Hyphomicrobium denitrificans ATCC 51888]
gi|299524838|gb|ADJ23307.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
ATCC 51888]
Length = 327
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSVGG---TTDNIEESCATFASRALGLTTPLRTTHQ 268
D D ++I + HV VL+KP G +V G T +I+ A R G P R H+
Sbjct: 87 DRDAIEKMILFEDDHVLVLNKPFGLAVQGGTGTKKHIDGMLEGMADR-FGGERP-RLVHR 144
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+D T G +++A+T+E + R + + K Y AL
Sbjct: 145 LDRDTTGVLLVAKTREAAAKLGRTFQTRSAAKTYWALVKG 184
>gi|195339845|ref|XP_002036527.1| GM11650 [Drosophila sechellia]
gi|194130407|gb|EDW52450.1| GM11650 [Drosophila sechellia]
Length = 739
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 377 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 435
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 436 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 472
>gi|163843268|ref|YP_001627672.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|163673991|gb|ABY38102.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
Length = 326
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 229 VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
V +KPAG +V G T +I+ + S+ R H+ID T G +VLART+
Sbjct: 104 VFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK---GEKPRLVHRIDRDTSGVLVLARTRGA 160
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 161 AQALTASFRERDTKKTYWALVKG 183
>gi|333395870|ref|ZP_08477687.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 293
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP GT + ++S + LG +P H++D T G +V+A+
Sbjct: 96 LVVDKPIGTKTHPNRPDEQDSLMNHVTAYLG--SPAYVVHRLDRDTSGAIVIAKNPVVLP 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
I +R I K++ + Y A LP
Sbjct: 154 ILNRLISSKRITRQYRAWVHGHLP 177
>gi|195471884|ref|XP_002088232.1| GE13593 [Drosophila yakuba]
gi|194174333|gb|EDW87944.1| GE13593 [Drosophila yakuba]
Length = 738
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 377 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 435
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 436 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 472
>gi|225075563|ref|ZP_03718762.1| hypothetical protein NEIFLAOT_00576 [Neisseria flavescens
NRL30031/H210]
gi|224953108|gb|EEG34317.1| hypothetical protein NEIFLAOT_00576 [Neisseria flavescens
NRL30031/H210]
Length = 328
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 93 IVYEDDALLVINKPSGVAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 152 AKKRSALVKLHEAIRNDHPKKIYLALGVGRLP 183
>gi|441498667|ref|ZP_20980861.1| RNA pseudouridylate synthase, group 1 [Fulvivirga imtechensis AK7]
gi|441437618|gb|ELR70968.1| RNA pseudouridylate synthase, group 1 [Fulvivirga imtechensis AK7]
Length = 226
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDN---IEESCATFASRALGLTTP--LRTTHQIDNCTE 274
I ++H+ +++KPAG V G + E + L H++D
Sbjct: 7 IVYEDNHLLIVNKPAGLLVQGDKSGDITLAEQAKLYVKEKYDKPGDVFLGVVHRLDRPVS 66
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTT--APLPVGIMTHYMR 320
G V+LART + ++ +E+++ K+Y A+TT P G + H+++
Sbjct: 67 GAVILARTSKALERMNKLFKERRIDKIYWAITTHRPPNTAGELVHWLK 114
>gi|45201401|ref|NP_986971.1| AGR305Wp [Ashbya gossypii ATCC 10895]
gi|44986335|gb|AAS54795.1| AGR305Wp [Ashbya gossypii ATCC 10895]
gi|374110222|gb|AEY99127.1| FAGR305Wp [Ashbya gossypii FDAG1]
Length = 381
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+++ +V+DKP G + T + + A G PL +++D T G ++
Sbjct: 106 KVVFEDNDLLVIDKPCGIPIHPTAYFYKNTLTEVLEDARGY--PLFPCYRLDKITSGLLI 163
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
A+TQ+ S +IR++ + K YLA
Sbjct: 164 FAKTQQTASRLQSQIRDQNMNKWYLA 189
>gi|56551401|ref|YP_162240.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802982|sp|O66114.2|Y505_ZYMMO RecName: Full=Uncharacterized RNA pseudouridine synthase ZMO0505;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|56542975|gb|AAV89129.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
Length = 219
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +++DKPAG V D AS G H++D T GC++
Sbjct: 7 RVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSGCLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LAR + + +VKK Y A+
Sbjct: 67 LARNPKMHRRLSEAFSQGQVKKCYWAI 93
>gi|289426144|ref|ZP_06427890.1| pseudouridine synthase, RluA family [Propionibacterium acnes SK187]
gi|289153309|gb|EFD02024.1| pseudouridine synthase, RluA family [Propionibacterium acnes SK187]
Length = 306
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQID 270
+RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 79 GTRIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLD 138
Query: 271 NCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 139 VGTSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|58581220|ref|YP_200236.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae KACC 10331]
gi|58425814|gb|AAW74851.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae KACC 10331]
Length = 335
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +VLAR
Sbjct: 101 EQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVLAR 160
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
T + + ++ + V + YLA+ L G + PI+ PR
Sbjct: 161 TVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANA--PIDRHPR 204
>gi|28316862|gb|AAO39454.1| RH45372p [Drosophila melanogaster]
Length = 739
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 378 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 436
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 437 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 473
>gi|407714322|ref|YP_006834887.1| Ribosomal large subunit pseudouridine synthase C [Burkholderia
phenoliruptrix BR3459a]
gi|407236506|gb|AFT86705.1| Ribosomal large subunit pseudouridine synthase C [Burkholderia
phenoliruptrix BR3459a]
Length = 345
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
RII E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 104 RIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 162
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE ++ K Y A
Sbjct: 163 LAKKRSALVNLHDQIRENRMDKRYYA 188
>gi|392402939|ref|YP_006439551.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
gi|390610893|gb|AFM12045.1| pseudouridine synthase, RluA family [Turneriella parva DSM 21527]
Length = 316
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 207 RFPRCYDIDWNSRI--IAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR 264
R+P + + N+ I IA E+ +V++KP G V + E++ + L TP
Sbjct: 66 RYPLRDEPEVNAEIATIAEDENFLVVNKPPGLPVHPSGIYKEQTLTALLVKRGILETP-H 124
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
H++D T G +++A+ ++ ++F + +R ++ K YL
Sbjct: 125 PLHRLDRETSGVLIMAKNRKAAAVFQKTLRSGEIDKQYL 163
>gi|338530001|ref|YP_004663335.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
gi|337256097|gb|AEI62257.1| RluA family pseudouridine synthase [Myxococcus fulvus HW-1]
Length = 314
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +DKPAG S T + +S LG L H++D T G V +T E S
Sbjct: 92 IAVDKPAGVSAQPTEGRVGDSLVDLVGAKLGRAAGL--VHRLDRETSGVTVFGKTAEATS 149
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
RE + +K Y+A T LP
Sbjct: 150 ALAAAFREGRARKRYVAATGPGLP 173
>gi|303249693|ref|ZP_07335898.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651505|gb|EFL81656.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 321
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|398824983|ref|ZP_10583295.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
gi|398224350|gb|EJN10660.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
Length = 236
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+R++ +++DKPAG V GG N+E+S F + GL P H++D
Sbjct: 17 ARVLHRDGLMLIIDKPAGLPVHRGPKGGA--NLEDS---FGALCFGLPRPPVLAHRLDKD 71
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GC+VL R ++ + + K+ K Y +
Sbjct: 72 TSGCLVLGRHRKATASLGLLFKHGKIGKTYWTVVEG 107
>gi|336393990|ref|ZP_08575389.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
Length = 293
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V+DKP GT + ++S + LG +P H++D T G +V+A+
Sbjct: 96 LVVDKPIGTKTHPNRPDEQDSLMNHVTAYLG--SPAYVVHRLDRDTSGAIVIAKNPVVLP 153
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
I +R I K++ + Y A LP
Sbjct: 154 ILNRLISSKRITRQYRAWVHGHLP 177
>gi|307248951|ref|ZP_07530961.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306854562|gb|EFM86755.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
Length = 326
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 187
>gi|260752988|ref|YP_003225881.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411950|ref|YP_005621315.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552351|gb|ACV75297.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932324|gb|AEH62864.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 219
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +++DKPAG V D AS G H++D T GC++
Sbjct: 7 RVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSGCLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LAR + + +VKK Y A+
Sbjct: 67 LARNPKMHRRLSEAFSQGQVKKCYWAI 93
>gi|397676641|ref|YP_006518179.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|2995386|emb|CAA63803.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397330|gb|AFN56657.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 219
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R++ + +++DKPAG V D AS G H++D T GC++
Sbjct: 7 RVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSGCLL 66
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LAR + + +VKK Y A+
Sbjct: 67 LARNPKMHRRLSEAFSQGQVKKCYWAI 93
>gi|392542160|ref|ZP_10289297.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas piscicida JCM
20779]
Length = 316
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
+V++KPAG +V G + + AL P L H++D T GC+++++ +
Sbjct: 103 IVINKPAGMAVHGGS-----GLSYGLIEALRALRPQEQSLELVHRLDRDTSGCLLISKRR 157
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
H ++REK ++K YLAL +
Sbjct: 158 AVLKGLHEQLREKTMEKNYLALVSG 182
>gi|300922611|ref|ZP_07138711.1| pseudouridine synthase, RluA family [Escherichia coli MS 182-1]
gi|300421088|gb|EFK04399.1| pseudouridine synthase, RluA family [Escherichia coli MS 182-1]
Length = 319
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RVLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|188575741|ref|YP_001912670.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188520193|gb|ACD58138.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 333
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +VLAR
Sbjct: 99 EQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVLAR 158
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
T + + ++ + V + YLA+ L G + PI+ PR
Sbjct: 159 TVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANA--PIDRHPR 202
>gi|445135009|ref|ZP_21383096.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444846415|gb|ELX71592.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
Length = 283
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 58 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RLLELVHRLDRDTSG 113
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 114 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 143
>gi|398791594|ref|ZP_10552314.1| pseudouridine synthase, RluA family [Pantoea sp. YR343]
gi|398214739|gb|EJN01310.1| pseudouridine synthase, RluA family [Pantoea sp. YR343]
Length = 318
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 MVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGILLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
H ++REK ++K YLAL P
Sbjct: 159 ALRSLHEQLREKGMQKDYLALVRGDWP 185
>gi|307262378|ref|ZP_07544024.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306867926|gb|EFM99756.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 326
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQAHFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 187
>gi|260773154|ref|ZP_05882070.1| ribosomal large subunit pseudouridine synthase C [Vibrio
metschnikovii CIP 69.14]
gi|260612293|gb|EEX37496.1| ribosomal large subunit pseudouridine synthase C [Vibrio
metschnikovii CIP 69.14]
Length = 318
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
I + H+ +L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 100 IVYEDDHLLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 157
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
+A+ + + REK V+K Y AL P +
Sbjct: 158 VAKKRSALRHLQAQFREKTVQKYYFALVMGRWPANV 193
>gi|86747487|ref|YP_483983.1| pseudouridine synthase [Rhodopseudomonas palustris HaA2]
gi|86570515|gb|ABD05072.1| Pseudouridine synthase [Rhodopseudomonas palustris HaA2]
Length = 300
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQI 269
D SR++ +V+DKP G V GG N+E S F GL P H++
Sbjct: 18 DIQSRVLHRDGLMLVIDKPPGLPVHRGPKGGP--NLETS---FEFLRFGLPRPPVLAHRL 72
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
D T GC+VL R ++ + + K+ K Y A+
Sbjct: 73 DRDTSGCLVLGRHRKATATLGLLFKHSKISKTYWAIVEG 111
>gi|409200238|ref|ZP_11228441.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas flavipulchra
JG1]
Length = 316
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
+V++KPAG +V G + + AL P L H++D T GC+++++ +
Sbjct: 103 IVINKPAGMAVHGGS-----GLSYGLIEALRALRPQEQSLELVHRLDRDTSGCLLISKRR 157
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
H ++REK ++K YLAL +
Sbjct: 158 AVLKGLHEQLREKTMEKNYLALVSG 182
>gi|194862300|ref|XP_001969970.1| GG10383 [Drosophila erecta]
gi|190661837|gb|EDV59029.1| GG10383 [Drosophila erecta]
Length = 721
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 360 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 418
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 419 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGIV 455
>gi|303252739|ref|ZP_07338900.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302648389|gb|EFL78584.1| 23S rRNA pseudouridylate synthase C [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
Length = 321
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|229160344|ref|ZP_04288342.1| Pseudouridine synthase [Bacillus cereus R309803]
gi|228623068|gb|EEK79896.1| Pseudouridine synthase [Bacillus cereus R309803]
Length = 307
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + ++ ++ G L+VH V P+ + + I + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NEPLKEGDKLQVHMFMEEEYGVDPE-YGELHVIFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|83950496|ref|ZP_00959229.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
gi|83838395|gb|EAP77691.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
Length = 346
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + L R H++D T G ++LART+
Sbjct: 96 DDHIIALNKPPGLPVQGGSKQTRHVDGLAEALRFDLDEKPRLVHRLDKDTSGVLILARTR 155
Query: 284 EYCSIFHRKIREKKVKKLYL-ALTTAPLP 311
+ + R + +K+Y A+ PLP
Sbjct: 156 QMAADLTAAFRHRNTRKIYWAAVAGVPLP 184
>gi|406672928|ref|ZP_11080153.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
gi|423316211|ref|ZP_17294116.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405584107|gb|EKB58029.1| RluA family pseudouridine synthase [Bergeyella zoohelcum ATCC
43767]
gi|405587472|gb|EKB61200.1| RluA family pseudouridine synthase [Bergeyella zoohelcum CCUG
30536]
Length = 352
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 204 HPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVG---GTTDNIEESCATFASRALGLT 260
HP R D I+ + +V+DKPAG V G D + F + GL
Sbjct: 93 HPPRENEIIPQDIPLTIVYEDDDLIVVDKPAGMVVHPGFGNWDGTLVNALAFHFQKNGLK 152
Query: 261 TPLR---TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T L H+ID T G +V+A+ + S ++ ++K K++Y A
Sbjct: 153 TDLDRVGLVHRIDKDTSGLLVVAKNEYALSHLAKQFYDRKTKRIYWAF 200
>gi|218896324|ref|YP_002444735.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228899971|ref|ZP_04064209.1| Pseudouridine synthase [Bacillus thuringiensis IBL 4222]
gi|434374331|ref|YP_006608975.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-789]
gi|218541071|gb|ACK93465.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228859657|gb|EEN04079.1| Pseudouridine synthase [Bacillus thuringiensis IBL 4222]
gi|401872888|gb|AFQ25055.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis HD-789]
Length = 307
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVL-- 230
KG TV Q+ + +++++ L+VH+ + D ++ + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 231 ------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KLEQMDTHPAEKGGNGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|426400547|ref|YP_007019519.1| RluA family pseudouridine synthase [Candidatus Endolissoclinum
patella L2]
gi|425857215|gb|AFX98251.1| pseudouridine synthase, RluA family protein [Candidatus
Endolissoclinum patella L2]
Length = 348
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KPAG +V G + + S + R H++D T G ++LAR Q
Sbjct: 120 IVINKPAGLAVQGGSGLTKHVDGALDSLRFEASERPRLVHRLDKHTSGVLILARQQSSAR 179
Query: 288 IFHRKIREKKVKKLYLALTTA 308
R K K+YLAL
Sbjct: 180 RLINAFRAKSAVKIYLALVIG 200
>gi|34499206|ref|NP_903421.1| pseudouridine synthase [Chromobacterium violaceum ATCC 12472]
gi|34105057|gb|AAQ61413.1| pseudouridine synthase A [Chromobacterium violaceum ATCC 12472]
Length = 225
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 215 DWNSRIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
D +I + +VLDKP+G SV G E+ SRA + T H++D T
Sbjct: 14 DTGLDVIYADDCLLVLDKPSGLLSVPGRG---EDKADCLISRAQKVYPDALTVHRLDMDT 70
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G VV+ R E ++KVKK Y+A+
Sbjct: 71 SGLVVMGRGPEMQRALSIAFMDRKVKKRYIAVVDG 105
>gi|84623138|ref|YP_450510.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae MAFF 311018]
gi|84367078|dbj|BAE68236.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
oryzae pv. oryzae MAFF 311018]
Length = 331
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +VLAR
Sbjct: 97 EQVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVLAR 156
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
T + + ++ + V + YLA+ L G + PI+ PR
Sbjct: 157 TVQAQTALVEQLSARDVHRQYLAVVVGALVSGGTANA--PIDRHPR 200
>gi|348029143|ref|YP_004871829.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
gi|347946486|gb|AEP29836.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
Length = 315
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
S II + +V +KP G +V GG+ N RAL L H++D T G
Sbjct: 91 SHIIFEDDRIIVFNKPTGLAVHGGSGLNF---GVIEGLRALRPQHQFLELVHRLDRDTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
C+++A+ + H ++R K+V K Y AL P
Sbjct: 148 CLLIAKKRSALRDLHEQLRSKQVDKRYHALVAGEWP 183
>gi|190151234|ref|YP_001969759.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307246812|ref|ZP_07528878.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307251150|ref|ZP_07533072.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307253568|ref|ZP_07535436.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307255795|ref|ZP_07537597.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257984|ref|ZP_07539737.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307260247|ref|ZP_07541955.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264584|ref|ZP_07546167.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189916365|gb|ACE62617.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306852283|gb|EFM84522.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306856816|gb|EFM88950.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858948|gb|EFM90993.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306861258|gb|EFM93250.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863531|gb|EFM95461.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865694|gb|EFM97574.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870113|gb|EFN01874.1| Ribosomal large subunit pseudouridine synthase C [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 326
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 98 ELEDQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 151
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 152 DRDTSGILLVAKKRSALRSLHEQLREKVVQKDYLAL 187
>gi|119945867|ref|YP_943547.1| RluA family pseudouridine synthase [Psychromonas ingrahamii 37]
gi|119864471|gb|ABM03948.1| ribosomal large subunit pseudouridine synthase C [Psychromonas
ingrahamii 37]
Length = 312
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATF--ASRALGLTTPLRTTHQIDNC 272
S+I+ + ++L+KP+G +V G + I E SR L L H++D
Sbjct: 92 SQIVYEDDGLIILNKPSGLAVHGGSGLDFGIIEGLRALRPESRFLELV------HRLDKA 145
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GC+++A+ + H ++R K + K Y AL
Sbjct: 146 TSGCLLIAKKRSMLRALHEQLRNKTMNKQYHALVKG 181
>gi|423119726|ref|ZP_17107410.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
gi|376397565|gb|EHT10196.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
Length = 331
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + + +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVSALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|338707704|ref|YP_004661905.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294508|gb|AEI37615.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 230
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ + +V+DKPAG V D AS G H++D T GC++L
Sbjct: 8 VLFIDAEAIVIDKPAGLPVTSVRDGSFSVENYLASLCFGFKRWPMIVHRLDRDTSGCLLL 67
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA 308
AR F + VKK Y A+ +
Sbjct: 68 ARNPRIHRRFSEAFSQGLVKKCYWAILSG 96
>gi|298370246|ref|ZP_06981562.1| ribosomal large subunit pseudouridine synthase C [Neisseria sp.
oral taxon 014 str. F0314]
gi|298281706|gb|EFI23195.1| ribosomal large subunit pseudouridine synthase C [Neisseria sp.
oral taxon 014 str. F0314]
Length = 332
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 190 DQIVEAGTYLR---VHVHPKRFP----------RCYDIDWNSRIIAVTESHVVLDKPAGT 236
D ++AG LR V K+ P R +DI + ++ +V++KP+GT
Sbjct: 60 DSRIQAGDLLRIPPVRTAEKQRPSENRVQAAPAREFDIVYED------DALLVINKPSGT 113
Query: 237 SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296
+V G + + RA L H++D T G +++A+ + H IR
Sbjct: 114 AVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMIAKKRSALVRLHEAIRND 172
Query: 297 KVKKLYLALTTAPL 310
+ KK+YLAL L
Sbjct: 173 RPKKIYLALGVGRL 186
>gi|423481270|ref|ZP_17457960.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
gi|401146030|gb|EJQ53550.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
Length = 307
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHV-V 229
KG TV Q+ + +++++ G L+VH+ Y ++ + + + HV V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMF---MEEEYGVEPEYGELNVVYEDDHVLV 96
Query: 230 LDKPAGTSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
++KP + N + A + + GL T +R H++D T G VV A+ +
Sbjct: 97 VNKPEQMDTHPSEKNGTGTLANLVACHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
++ R + E+K+K+ Y AL +
Sbjct: 157 AVMDRLLMERKIKRTYTALVEGKV 180
>gi|339450229|ref|ZP_08653599.1| pseudouridylate synthase [Leuconostoc lactis KCTC 3528]
Length = 217
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 224 TESHVVLDKPAGTSVGGTTDNIEES-----CATFASRAL-GLTTPLR--TTHQIDNCTEG 275
+ VV+DKPAG + N ++ A F +R L P R H+ID T G
Sbjct: 3 NDDFVVVDKPAGMKMHPHAPNEADTLLNYLAADFQARHLMSAGQPARPYMVHRIDRDTSG 62
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLA 304
V++A+ I +R + +K +K+ YLA
Sbjct: 63 AVIVAKNPVVVPILNRLLAQKAIKRTYLA 91
>gi|261856344|ref|YP_003263627.1| pseudouridine synthase [Halothiobacillus neapolitanus c2]
gi|261836813|gb|ACX96580.1| pseudouridine synthase, RluA family [Halothiobacillus neapolitanus
c2]
Length = 346
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 215 DWNSR----IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQID 270
+W +R I+ E+ + ++KPAG +V G + NI + GL L H+ID
Sbjct: 102 NWLARAADMIVYEDEALLAVNKPAGLAVHGGS-NIPFGLIELMRQHTGLGEKLELAHRID 160
Query: 271 NCTEGCVVLARTQEYCSIFHRKIR-EKKVKKLYLALTTAPLP 311
T G ++LA+T+ + R E +K YLA+ P
Sbjct: 161 RDTSGLLILAKTRATLHSLQTQFRPEGHAEKQYLAIVHGHWP 202
>gi|218439930|ref|YP_002378259.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218172658|gb|ACK71391.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
Length = 548
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I+ + ++++KP G SV G + + +S + + L LR+ H++D T G ++
Sbjct: 343 IVYEDDYLIIINKPEGLLSVPGRSSDRYDSVISRLNHLLPDGHLLRSVHRLDLDTSGLLL 402
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
LAR + + ++ R++K++K+Y AL
Sbjct: 403 LARNDQIYNHLAQQFRDRKIEKIYQALVQG 432
>gi|74311647|ref|YP_310066.1| 23S rRNA pseudouridylate synthase C [Shigella sonnei Ss046]
gi|383177743|ref|YP_005455748.1| 23S rRNA pseudouridylate synthase C [Shigella sonnei 53G]
gi|414575366|ref|ZP_11432571.1| pseudouridine synthase, RluA family protein [Shigella sonnei
3233-85]
gi|415850624|ref|ZP_11527499.1| pseudouridine synthase, RluA family protein [Shigella sonnei 53G]
gi|418264094|ref|ZP_12884651.1| 23S rRNA pseudouridine synthase [Shigella sonnei str. Moseley]
gi|420357883|ref|ZP_14858885.1| pseudouridine synthase, RluA family protein [Shigella sonnei
3226-85]
gi|420362792|ref|ZP_14863701.1| 23S rRNA pseudouridine synthase [Shigella sonnei 4822-66]
gi|73855124|gb|AAZ87831.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|323165595|gb|EFZ51382.1| pseudouridine synthase, RluA family protein [Shigella sonnei 53G]
gi|391286224|gb|EIQ44771.1| pseudouridine synthase, RluA family protein [Shigella sonnei
3226-85]
gi|391287794|gb|EIQ46309.1| pseudouridine synthase, RluA family protein [Shigella sonnei
3233-85]
gi|391295605|gb|EIQ53749.1| 23S rRNA pseudouridine synthase [Shigella sonnei 4822-66]
gi|397902210|gb|EJL18535.1| 23S rRNA pseudouridine synthase [Shigella sonnei str. Moseley]
Length = 319
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLIAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|400405773|ref|YP_006588632.1| RluA family pseudouridine synthase [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400364136|gb|AFP85204.1| pseudouridine synthase, RluA family [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 318
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N I+ + ++L+KPAGT+V GG+ + A R G L H++D T G
Sbjct: 92 NDSILYEDDYLLILNKPAGTAVHGGSGLSFGVIEGLRALRPSGRF--LELVHRLDRHTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
++LA+ + H ++R ++++K Y+AL
Sbjct: 150 ALLLAKKRSSLHALHEQLRAQRMQKDYVALVGG 182
>gi|387771065|ref|ZP_10127237.1| rRNA pseudouridylate synthase C [Pasteurella bettyae CCUG 2042]
gi|386902984|gb|EIJ67805.1| rRNA pseudouridylate synthase C [Pasteurella bettyae CCUG 2042]
Length = 318
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF----ASRALGLTTP-LRTTHQIDNCT 273
+II + +VL+KP+G +V G S +F A RAL T L H+ID T
Sbjct: 96 QIIFEDDCLLVLNKPSGIAVHGG------SGLSFGVIEALRALRPTAKYLELVHRIDRDT 149
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +++A+ + H ++R K VKK YLAL
Sbjct: 150 SGILLVAKKRSALRSLHEQLRIKTVKKDYLALVQG 184
>gi|417844357|ref|ZP_12490401.1| putative pseudouridine synthase, RluA-like protein [Haemophilus
haemolyticus M21639]
gi|341956810|gb|EGT83226.1| putative pseudouridine synthase, RluA-like protein [Haemophilus
haemolyticus M21639]
Length = 224
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTELVAKQLNIPQ-VWLVHRLDKVTSGLLILALNTESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|307730549|ref|YP_003907773.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1003]
gi|307585084|gb|ADN58482.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1003]
Length = 345
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II E +V+DKPAG +V G + + A L H++D T G ++
Sbjct: 104 KIIFEDEHLLVIDKPAGVAVHGGS-GVAFGVIEQMREARPQAKFLELVHRLDRETSGILM 162
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLA 304
LA+ + H +IRE K+ K Y A
Sbjct: 163 LAKKRSALVNLHDQIRENKMDKRYYA 188
>gi|317047700|ref|YP_004115348.1| RluA family pseudouridine synthase [Pantoea sp. At-9b]
gi|316949317|gb|ADU68792.1| pseudouridine synthase, RluA family [Pantoea sp. At-9b]
Length = 318
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGILLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
H ++REK ++K YLAL P
Sbjct: 159 ALRSLHEQLREKGMQKDYLALVRGDWP 185
>gi|407703758|ref|YP_006827343.1| hypothetical protein MC28_0522 [Bacillus thuringiensis MC28]
gi|407381443|gb|AFU11944.1| Pseudouridine synthase [Bacillus thuringiensis MC28]
Length = 307
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKR-------FPRCYDIDWNSRIIAVTE 225
KG TV Q+ + +++++ G +VH+ + + + + + ++ V +
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKFQVHMFMEEEYGVGPEYGELHVVYEDDHVLIVNK 99
Query: 226 SHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
+ PA GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 100 PEKMDTHPAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIA 155
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
+I R + E+K+K+ Y AL
Sbjct: 156 GAIMDRLLMERKIKRTYAALVEG 178
>gi|373450219|ref|ZP_09542244.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
gi|371932579|emb|CCE77241.1| Pseudouridine synthase [Wolbachia pipientis wAlbB]
Length = 317
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR--IIAVTESHVVLDKPAGTSV----G 239
I + D IV+ G VH+ + ++N + II E +VL K +G +V G
Sbjct: 49 IINNDHIVKLGEEYIVHLVQPDISISIEPNYNIKLDIIYEDEDIIVLSKQSGLTVHPGAG 108
Query: 240 GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
D + + + + T H++D T G +V+A+ ++ S + +K+K
Sbjct: 109 TNNDTLLNAVIAHLGKIPYINTRSGIVHRLDKDTSGLMVIAKNEQSHSFLSELLSNRKIK 168
Query: 300 KLYLALTTAPLP 311
+ YLA+ LP
Sbjct: 169 REYLAVIWGALP 180
>gi|319638921|ref|ZP_07993679.1| pseudouridine synthase [Neisseria mucosa C102]
gi|317399825|gb|EFV80488.1| pseudouridine synthase [Neisseria mucosa C102]
Length = 328
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 93 IVYEDDALLVINKPSGVAVHGGS-GVSFGVIEQIRRARPEARYLELVHRLDKDTSGLLMI 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 152 AKKRSALVKLHEAIRNDHPKKIYLALGVGRLP 183
>gi|414169243|ref|ZP_11425080.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410886002|gb|EKS33815.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 255
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+R++ +V+DKPAG +V A+F + GL P H++D T GC
Sbjct: 12 QARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGC 71
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLY 302
+VL R ++ + + K+ K Y
Sbjct: 72 LVLGRHRKATASLGLLFKHGKIDKTY 97
>gi|408380456|ref|ZP_11178040.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
gi|407745669|gb|EKF57201.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
Length = 329
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 218 SRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
SR++ + V VL+KPAG +V G + +I++ + SR R H++D T
Sbjct: 92 SRMLLHEDEKVFVLNKPAGLAVQGGSGLNRHIDKMLEAWTSRK---GEKPRLVHRLDRDT 148
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +V+ART+ RE+ KK+Y +L
Sbjct: 149 SGVLVVARTRGAAQKLTAAFRERDTKKIYWSLVKG 183
>gi|196035329|ref|ZP_03102734.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|195992006|gb|EDX55969.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
Length = 307
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+V + YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVRMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|365139622|ref|ZP_09345969.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
gi|363654235|gb|EHL93150.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
Length = 331
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|343517296|ref|ZP_08754302.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. N418]
gi|342793620|gb|EGU29410.1| ribosomal large subunit pseudouridine synthase C [Vibrio sp. N418]
Length = 317
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II E ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 96 IIYEDEHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK V+K Y AL
Sbjct: 154 VAKKRSALRHLQAQFREKTVQKYYFALVMG 183
>gi|283782368|ref|YP_003373123.1| RluA family pseudouridine synthase [Pirellula staleyi DSM 6068]
gi|283440821|gb|ADB19263.1| pseudouridine synthase, RluA family [Pirellula staleyi DSM 6068]
Length = 603
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
D++ + R++ E+ V+ KPA + + + + R + R H++D
Sbjct: 374 DVNVDIRVVYEDEAIAVVHKPAPLPLHAS-GRFHRNTLEWILREIYDPQKPRPVHRLDAN 432
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G V+ ART+ + + ++ + KV+K YLAL +
Sbjct: 433 TSGLVLFARTRHFAKLLQQQFTQGKVEKFYLALVSG 468
>gi|167855918|ref|ZP_02478667.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parasuis 29755]
gi|219871480|ref|YP_002475855.1| 23S rRNA pseudouridylate synthase C [Haemophilus parasuis SH0165]
gi|167852955|gb|EDS24220.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
parasuis 29755]
gi|219691684|gb|ACL32907.1| 23S rRNA pseudouridylate synthase C [Haemophilus parasuis SH0165]
Length = 319
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ E +V++KP+G +V G S +F AL P L H+I
Sbjct: 93 ELEHQILYEDEVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 146
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 147 DRDTSGLLLVAKKRSALRSLHEQLREKVVQKDYLAL 182
>gi|417130981|ref|ZP_11976252.1| rRNA pseudouridylate synthase C [Escherichia coli 5.0588]
gi|417607449|ref|ZP_12257961.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_DG131-3]
gi|419158439|ref|ZP_13702955.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6D]
gi|345361495|gb|EGW93654.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_DG131-3]
gi|378011987|gb|EHV74923.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6D]
gi|386154089|gb|EIH05370.1| rRNA pseudouridylate synthase C [Escherichia coli 5.0588]
Length = 254
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 29 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 84
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 85 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 114
>gi|228944990|ref|ZP_04107351.1| Pseudouridine synthase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228814659|gb|EEM60919.1| Pseudouridine synthase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 307
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID--WNSRIIAVTESHVVL 230
KG TV Q+ + +++++ G L+V + YD++ + + + HV++
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVRMF---MEEEYDVEPEYGELDVVYEDDHVLI 96
Query: 231 --------DKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
PA GT N+ F + GL T +R H++D T G VV A+
Sbjct: 97 VNKPEKMDTHPAEKGGMGTLANL----VAFHYQMKGLETKVRHIHRLDKDTTGGVVFAKH 152
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
+ +I R + E+K+K+ Y AL +
Sbjct: 153 RIAGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|402773646|ref|YP_006593183.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401775666|emb|CCJ08532.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 229
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 23/126 (18%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQ 268
+D SR++ +++DKPAG +V GG + +E++ F GL P H+
Sbjct: 1 MDLLSRLLHRDGLMLIIDKPAGVAVHRGPKGGAS--LEDA---FDQLRFGLPRPPALAHR 55
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAP--------LPVGIMT--- 316
+D T GC+VL R ++ + ++ K Y A+ AP LP+G +
Sbjct: 56 LDKDTSGCLVLGRHRKALERLGALFKSGRIGKTYWAVVEGAPTGEEGEIDLPLGRLDATR 115
Query: 317 -HYMRP 321
+MRP
Sbjct: 116 GWWMRP 121
>gi|418826701|ref|ZP_13381898.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392804744|gb|EJA60890.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
Length = 239
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 14 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 69
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 70 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 99
>gi|419074434|ref|ZP_13619993.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3F]
gi|377929424|gb|EHU93320.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3F]
Length = 254
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 29 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 84
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 85 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 114
>gi|205353078|ref|YP_002226879.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375123907|ref|ZP_09769071.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|205272859|emb|CAR37786.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326628157|gb|EGE34500.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
Length = 319
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RLLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|430003654|emb|CCF19443.1| Pseudouridine synthase [Rhizobium sp.]
Length = 329
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V G T +I++ + S R H++D T G +V+ART+
Sbjct: 103 IVLNKPAGLAVQGGSGVTRHIDQMLDAWTSPK---GEKPRLVHRLDRDTSGVLVIARTRG 159
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 160 AAQKLTAAFRERDTKKTYWALVKG 183
>gi|392382334|ref|YP_005031531.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877299|emb|CCC98114.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 229
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+R++ +++DKPAG V G N+E F + G P H++D T
Sbjct: 7 QARVLYRDGLMLIIDKPAGLPVHAGPGGGPNLERH---FDALRFGFPKPPGLAHRLDRDT 63
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
GC++L R + + ++ KV K Y A+ P
Sbjct: 64 SGCLILGRHPKALRKLGKLFQDGKVDKTYWAVVAGTPP 101
>gi|84779551|dbj|BAE74328.1| ribosomal large subunit pseudouridine synthase C [Sodalis
glossinidius str. 'morsitans']
Length = 328
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 35/152 (23%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDN 271
N ++ + ++L+KPAGT+V G S +F L P L H++D
Sbjct: 102 NEAVLYEDDHLLILNKPAGTAVHGG------SGLSFGVIEGLRALRPDARFLELVHRLDR 155
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-----------TAPLPVGIMTHYMR 320
T G +++A+ + H ++R K ++K YLAL APL I+ R
Sbjct: 156 DTSGVLLVAKKRSALRALHEQLRAKGMQKDYLALVRGQWQSHVKTIAAPLLKNILASGER 215
Query: 321 PINIAPRLVSEGK---------TIFGLALMIR 343
+ R+ SEGK F LA+++R
Sbjct: 216 IV----RVNSEGKPSETCFKVEERFTLAMLVR 243
>gi|332668407|ref|YP_004451195.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
gi|332337221|gb|AEE54322.1| pseudouridine synthase [Haliscomenobacter hydrossis DSM 1100]
Length = 243
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II V E +V +KP+G + D ++ + H+ID T G +V
Sbjct: 7 KIIHVDEHIIVCEKPSG--LLSIPDRFDQEKPNLYHLLEAQYGQVWIVHRIDRETSGILV 64
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA-PL-PVGIMTHYMRPI-NIAPRLVSEGKTI 335
AR ++ +++ ++ V+K+YLAL P+ P G + + P +IA ++++ GK
Sbjct: 65 FARNEDAHRALNQQFLDRSVEKIYLALVEGRPMPPTGEINKAIAPHPSIAGKMITSGKGK 124
Query: 336 FGLAL 340
L L
Sbjct: 125 SALTL 129
>gi|416220549|ref|ZP_11625473.1| RluA family pseudouridine synthase [Moraxella catarrhalis 103P14B1]
gi|326566216|gb|EGE16368.1| RluA family pseudouridine synthase [Moraxella catarrhalis 103P14B1]
Length = 382
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RII + +VL+KP G +V G + ES + L + L H+ID T G
Sbjct: 143 ERIIFEDDGLIVLNKPHGMAVHGGSG---ESFGIIEAMRLAMGKKYLELIHRIDKDTSGL 199
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + I + R K + K YL L
Sbjct: 200 LLIAKKRSTLKILQEQFRTKTIHKQYLCLVMG 231
>gi|170695400|ref|ZP_02886545.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
gi|170139591|gb|EDT07774.1| pseudouridine synthase, RluA family [Burkholderia graminis C4D1M]
Length = 345
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
+RV H + P RII E +V+DKPAG +V G + A +
Sbjct: 84 IRVAQHDETVPSAPVPSAEFRIIFEDEHLLVIDKPAGVAVHGGS-----GVAFGVIEQMR 138
Query: 259 LTTP----LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ P L H++D T G ++LA+ + H +IRE ++ K Y A
Sbjct: 139 QSRPQAKFLELVHRLDRETSGILMLAKKRSALVNLHDQIRENRMDKRYYA 188
>gi|402781395|ref|YP_006636941.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|402542282|gb|AFQ66431.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 308
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 74 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 129
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++R+K ++K YLAL APL
Sbjct: 130 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPLLKN 189
Query: 314 IMTHYMRPINIAPRLVSEGK 333
I+ R + R+ EGK
Sbjct: 190 ILQSGERIV----RVSQEGK 205
>gi|152969638|ref|YP_001334747.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329999760|ref|ZP_08303517.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|378978122|ref|YP_005226263.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419762714|ref|ZP_14288960.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|421909211|ref|ZP_16339033.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|425077274|ref|ZP_18480377.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425080908|ref|ZP_18484005.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425087907|ref|ZP_18491000.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425090970|ref|ZP_18494055.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428150126|ref|ZP_18997915.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|150954487|gb|ABR76517.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328538217|gb|EGF64365.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|364517533|gb|AEW60661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397744209|gb|EJK91421.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405592983|gb|EKB66435.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405604631|gb|EKB77752.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405604718|gb|EKB77825.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405613127|gb|EKB85875.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|410117055|emb|CCM81658.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|427539916|emb|CCM94053.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 331
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|398353276|ref|YP_006398740.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
gi|390128602|gb|AFL51983.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
Length = 330
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSV-GGTTDN--IEESCATFASRALGLTTPLRTTHQ 268
D D SR++ ++ V VL+KPAG +V GG+ N I++ + S+ R H+
Sbjct: 89 DGDLLSRMVLHEDAKVIVLNKPAGLAVQGGSGVNRHIDKMLEAWTSQK---GEKPRLVHR 145
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+D T G +V+ART+ RE+ +K+Y +L
Sbjct: 146 LDRDTSGVLVIARTRGAAQQLTAAFRERDTRKIYWSLVKG 185
>gi|402851582|ref|ZP_10899733.1| pseudouridine synthase [Rhodovulum sp. PH10]
gi|402498142|gb|EJW09903.1| pseudouridine synthase [Rhodovulum sp. PH10]
Length = 291
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 228 VVLDKPAGTSV------GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
+V+DKPAG V GG+ ++ F + GL P H++D T GC+VL R
Sbjct: 9 IVIDKPAGLPVHRGPKGGGSLED------GFDALRFGLPRPPALAHRLDRETSGCLVLGR 62
Query: 282 TQEYCSIFHRKIREKKVKKLYLAL 305
++ + + +VKK Y A+
Sbjct: 63 HRKALAHLGLLFKHGQVKKTYWAV 86
>gi|383309857|ref|YP_005362667.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871129|gb|AFF23496.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. HN06]
Length = 311
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
++I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 83 ENQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 138
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 139 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 170
>gi|295110320|emb|CBL24273.1| pseudouridine synthase, RluA family [Ruminococcus obeum A2-162]
Length = 293
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 165 VLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDID------WNS 218
+LS + K R Q RI +Q++ AG + RV R D D
Sbjct: 31 ILSSMKADKEALTRNGQ---RIGGREQLL-AGDHFRV-----RLLETVDSDGIVPVSMPL 81
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
I+ E +V++KPA S+G T+ + A + A +P R +++D T
Sbjct: 82 SILYEDEDILVINKPADMPVHPSIGNYTNTLANGVAAYLD-AKDEHSPFRCINRLDRDTS 140
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G ++LA+ ++ ++R +++++ YLA+ P
Sbjct: 141 GALILAKNAFSAAVLSTQMRNRQIRRTYLAVVEGITP 177
>gi|385789666|ref|YP_005820789.1| putative ribosomal large subunit pseudouridine synthase C
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|302325509|gb|ADL24710.1| putative ribosomal large subunit pseudouridine synthase C
[Fibrobacter succinogenes subsp. succinogenes S85]
Length = 411
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFA---SRALGLTTPLRTTHQIDNCTEG 275
++ TE +V+++KP+G S G+ ES + R GL H++D T G
Sbjct: 170 LVVQTEDYVIVNKPSGLASQPGSGTRPGESLVEYLWEWGRNEGLDFKPTIAHRLDQETSG 229
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
++ A + F R IRE V K Y AL L
Sbjct: 230 LIIAALHGDTLRDFTRMIREHVVDKFYFALVKGNL 264
>gi|288936150|ref|YP_003440209.1| pseudouridine synthase [Klebsiella variicola At-22]
gi|290510796|ref|ZP_06550166.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
gi|288890859|gb|ADC59177.1| pseudouridine synthase, RluA family [Klebsiella variicola At-22]
gi|289777512|gb|EFD85510.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
Length = 331
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|78100963|pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
gi|78100964|pdb|1XPI|B Chain B, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
Length = 231
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 6 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 61
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 62 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV-- 119
Query: 325 APRLVSEGK 333
R+ EGK
Sbjct: 120 --RVSQEGK 126
>gi|416523439|ref|ZP_11741116.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363550175|gb|EHL34504.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
Length = 286
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|301328545|ref|ZP_07221606.1| pseudouridine synthase, RluA family [Escherichia coli MS 78-1]
gi|300844937|gb|EFK72697.1| pseudouridine synthase, RluA family [Escherichia coli MS 78-1]
Length = 283
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 58 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 113
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 114 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 143
>gi|258646966|ref|ZP_05734435.1| ribosomal large subunit pseudouridine synthase C [Dialister invisus
DSM 15470]
gi|260404405|gb|EEW97952.1| ribosomal large subunit pseudouridine synthase C [Dialister invisus
DSM 15470]
Length = 305
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 163 PSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIA 222
+V +K+ + GK + T+R+ D++V +V PK R + I + I
Sbjct: 32 KAVRTKKLKVNGK---KEDGTYRLCEGDRVVS-------YVLPKEKRRDFTIVYEDEHI- 80
Query: 223 VTESHVVLDKPAG----TSVGGTTDN-IEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
++ DK AG S G TT I E A + H+ID T G +
Sbjct: 81 -----LIADKKAGLLCMDSTGKTTRTLIGEVNEYLADKG---EPSAYMVHRIDFNTSGLM 132
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA--PLPVGIMTHYM 319
V+A+ +E I R I+E++++K+YL + + G + HY+
Sbjct: 133 VIAKDEESKGILDRMIKERELEKVYLCIVSGVPKKKEGHLIHYL 176
>gi|62127337|gb|AAX65040.1| 23S rRNA pseudouridylate synthase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 347
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 122 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 177
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 178 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 207
>gi|417843751|ref|ZP_12489819.1| putative pseudouridine synthase, RsuA and RluB/C/D/E/F [Haemophilus
haemolyticus M21127]
gi|341948664|gb|EGT75284.1| putative pseudouridine synthase, RsuA and RluB/C/D/E/F [Haemophilus
haemolyticus M21127]
Length = 224
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTELVAKQLNVPQ-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|332529427|ref|ZP_08405386.1| pseudouridine synthase RluD [Hylemonella gracilis ATCC 19624]
gi|332041073|gb|EGI77440.1| pseudouridine synthase RluD [Hylemonella gracilis ATCC 19624]
Length = 322
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 225 ESHVVLDKPAGTSVGGTTDN----IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
E+ + +DKPAG +V G + IE+ G L H++D T G ++LA
Sbjct: 92 EAVLAVDKPAGVAVHGGSGVSFGVIEQLRTARGYGQAGGAKFLELVHRLDRETSGILLLA 151
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+ + + RE++ K YLAL + P
Sbjct: 152 KKRSALKALQDQFRERETGKTYLALVSGRWP 182
>gi|238894120|ref|YP_002918854.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|386034265|ref|YP_005954178.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|419971779|ref|ZP_14487209.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980866|ref|ZP_14496147.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986072|ref|ZP_14501208.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989690|ref|ZP_14504665.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419994890|ref|ZP_14509698.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004008|ref|ZP_14518649.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009714|ref|ZP_14524195.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014687|ref|ZP_14528992.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018943|ref|ZP_14533138.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026701|ref|ZP_14540701.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031484|ref|ZP_14545305.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038265|ref|ZP_14551913.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044304|ref|ZP_14557785.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050192|ref|ZP_14563494.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055617|ref|ZP_14568782.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062616|ref|ZP_14575583.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066125|ref|ZP_14578927.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420070777|ref|ZP_14583427.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078973|ref|ZP_14591425.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083276|ref|ZP_14595560.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421918594|ref|ZP_16348112.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424830061|ref|ZP_18254789.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424934049|ref|ZP_18352421.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|428935764|ref|ZP_19009219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
gi|428942292|ref|ZP_19015295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|238546436|dbj|BAH62787.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|339761393|gb|AEJ97613.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|397344575|gb|EJJ37707.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397349439|gb|EJJ42533.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397352717|gb|EJJ45795.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397367455|gb|EJJ60066.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397368663|gb|EJJ61268.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369189|gb|EJJ61791.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397377703|gb|EJJ69929.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380672|gb|EJJ72851.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389604|gb|EJJ81537.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394733|gb|EJJ86454.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400353|gb|EJJ91998.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397404418|gb|EJJ95926.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411787|gb|EJK03036.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412071|gb|EJK03311.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421470|gb|EJK12482.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427635|gb|EJK18402.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430395|gb|EJK21090.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397441281|gb|EJK31661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444279|gb|EJK34562.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451367|gb|EJK41453.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407808236|gb|EKF79487.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410119092|emb|CCM90737.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414707486|emb|CCN29190.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426298944|gb|EKV61313.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|426299773|gb|EKV62091.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
Length = 317
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 179
>gi|343507589|ref|ZP_08744986.1| ribosomal large subunit pseudouridine synthase C [Vibrio
ichthyoenteri ATCC 700023]
gi|343510954|ref|ZP_08748145.1| ribosomal large subunit pseudouridine synthase C [Vibrio
scophthalmi LMG 19158]
gi|342797647|gb|EGU33290.1| ribosomal large subunit pseudouridine synthase C [Vibrio
ichthyoenteri ATCC 700023]
gi|342799900|gb|EGU35450.1| ribosomal large subunit pseudouridine synthase C [Vibrio
scophthalmi LMG 19158]
Length = 317
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVV 278
II E ++L+KP+GT+V G + + A A RAL L H+ID T G ++
Sbjct: 96 IIYEDEHMLILNKPSGTAVHGGSG--LKFGAIEALRALRPQARFLELVHRIDRDTSGILL 153
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+A+ + + REK V+K Y AL
Sbjct: 154 VAKKRSALRHLQAQFREKTVQKYYFALVMG 183
>gi|163852141|ref|YP_001640184.1| pseudouridine synthase [Methylobacterium extorquens PA1]
gi|163663746|gb|ABY31113.1| pseudouridine synthase [Methylobacterium extorquens PA1]
Length = 239
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 228 VVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+V+DKPAG V GG T F GL TH++D T GC+VL R
Sbjct: 28 LVIDKPAGLPVHPGPKGGPTLTDHLDALRF-----GLPRRPEATHRLDRDTSGCLVLGRH 82
Query: 283 QEYCSIFHRKIREKKVKKLYLAL 305
+ + +R + KV K Y AL
Sbjct: 83 AKALARLNRLFADGKVDKTYWAL 105
>gi|89070524|ref|ZP_01157813.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
gi|89043831|gb|EAR50029.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
Length = 348
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 209 PRCYDIDWNSRIIAVTESH-VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTH 267
P D + + + H +VL+KP G G + A+ GL R H
Sbjct: 81 PSAQDAEMMRAAVLYRDDHLIVLNKPPGLPTQGGSRQTRHVDGLSAALTFGLEEKPRLVH 140
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
++D T G ++LART+ R ++ +K+Y A
Sbjct: 141 RLDKDTSGILLLARTRAAAKGLTDAFRSRETRKIYWA 177
>gi|170717346|ref|YP_001784455.1| 23S rRNA pseudouridylate synthase C [Haemophilus somnus 2336]
gi|168825475|gb|ACA30846.1| pseudouridine synthase, RluA family [Haemophilus somnus 2336]
Length = 326
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 228 VVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G +V GG+ N E+ T A L H++D T G +++A+ +
Sbjct: 108 LVLNKPSGLAVHGGSGLNFGAIEALRTLRPEA----RFLELVHRLDRDTSGILLIAKKRS 163
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
H ++REK ++K YLAL
Sbjct: 164 ALRSLHEQLREKTIQKEYLAL 184
>gi|449060585|ref|ZP_21738219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
gi|448873719|gb|EMB08798.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
Length = 317
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 179
>gi|420245078|ref|ZP_14748755.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398049440|gb|EJL41860.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 331
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ E +VL+KPAG +V G + +I++ ++ S R H++D T G
Sbjct: 95 VLHEDEKVIVLNKPAGLAVQGGSGVARHIDQMLDSWVSPK---GEKPRLVHRLDRDTSGV 151
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+V+ART+ RE+ KK Y AL
Sbjct: 152 LVIARTRGAAQKLTAAFRERDTKKTYWALVKG 183
>gi|229078576|ref|ZP_04211134.1| Pseudouridine synthase [Bacillus cereus Rock4-2]
gi|228704720|gb|EEL57148.1| Pseudouridine synthase [Bacillus cereus Rock4-2]
Length = 307
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV V++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLVVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|162382793|ref|YP_454733.2| 23S rRNA pseudouridylate synthase C [Sodalis glossinidius str.
'morsitans']
Length = 318
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 35/152 (23%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDN 271
N ++ + ++L+KPAGT+V G S +F L P L H++D
Sbjct: 92 NEAVLYEDDHLLILNKPAGTAVHGG------SGLSFGVIEGLRALRPDARFLELVHRLDR 145
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-----------TAPLPVGIMTHYMR 320
T G +++A+ + H ++R K ++K YLAL APL I+ R
Sbjct: 146 DTSGVLLVAKKRSALRALHEQLRAKGMQKDYLALVRGQWQSHVKTIAAPLLKNILASGER 205
Query: 321 PINIAPRLVSEGK---------TIFGLALMIR 343
+ R+ SEGK F LA+++R
Sbjct: 206 IV----RVNSEGKPSETCFKVEERFTLAMLVR 233
>gi|288962105|ref|YP_003452400.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288914371|dbj|BAI75856.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 257
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+R++ E V+DKPAG +V G TD++E A P + H++D T
Sbjct: 17 RARVLHRDELCFVIDKPAGLAVHKAGRITDHLELYLPHLAE---ADGEPPKLAHRLDRDT 73
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC++L RT F + V+K Y A+
Sbjct: 74 AGCLILGRTPWALKRFGQMFAAGHVEKTYWAVADG 108
>gi|206577057|ref|YP_002239295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae 342]
gi|206566115|gb|ACI07891.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae 342]
Length = 317
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 179
>gi|145588577|ref|YP_001155174.1| RluA family pseudouridine synthase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046983|gb|ABP33610.1| ribosomal large subunit pseudouridine synthase C [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 339
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ E+ ++++KPAG +V G + A L +T P L H++D T G
Sbjct: 111 ILFEDEALLIVNKPAGLAVHGGS-----GIALGVIETLRITRPELKFLELVHRLDRDTSG 165
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
++LA+ + HR+IRE + K Y L + G
Sbjct: 166 VLLLAKKRSALVELHRQIREGQTDKRYYLLAHGEIEQG 203
>gi|148825678|ref|YP_001290431.1| hypothetical protein CGSHiEE_03090 [Haemophilus influenzae PittEE]
gi|229846961|ref|ZP_04467067.1| hypothetical protein CGSHi7P49H1_05916 [Haemophilus influenzae
7P49H1]
gi|386265588|ref|YP_005829080.1| pseudouridylate synthase [Haemophilus influenzae R2846]
gi|148715838|gb|ABQ98048.1| hypothetical protein CGSHiEE_03090 [Haemophilus influenzae PittEE]
gi|229810045|gb|EEP45765.1| hypothetical protein CGSHi7P49H1_05916 [Haemophilus influenzae
7P49H1]
gi|309972824|gb|ADO96025.1| Probable pseudouridylate synthase [Haemophilus influenzae R2846]
Length = 224
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTELVAKQLNVPK-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|113460859|ref|YP_718926.1| 23S rRNA pseudouridylate synthase C [Haemophilus somnus 129PT]
gi|112822902|gb|ABI24991.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
somnus 129PT]
Length = 326
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 228 VVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G +V GG+ N E+ T A L H++D T G +++A+ +
Sbjct: 108 LVLNKPSGLAVHGGSGLNFGAIEALRTLRPEA----RFLELVHRLDRDTSGILLIAKKRS 163
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
H ++REK ++K YLAL
Sbjct: 164 ALRSLHEQLREKTIQKEYLAL 184
>gi|77462289|ref|YP_351793.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332560170|ref|ZP_08414492.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
gi|77386707|gb|ABA77892.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332277882|gb|EGJ23197.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
Length = 346
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 100 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 159
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
R + +K+Y AL
Sbjct: 160 RALSESFRHRNTRKIYWALVAG 181
>gi|395003641|ref|ZP_10387766.1| pseudouridine synthase, RluA family [Acidovorax sp. CF316]
gi|394318436|gb|EJE54867.1| pseudouridine synthase, RluA family [Acidovorax sp. CF316]
Length = 336
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 221 IAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I + + HV+ LDKPAG +V G + + +A L H++D T G +++
Sbjct: 106 ILLEDEHVIALDKPAGVAVHGGS-GVSFGVIEQLRQARPAAKFLELVHRLDRDTSGILLV 164
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA 308
A+ + + + RE++ K YLAL T
Sbjct: 165 AKKRSALTHLQDQFRERETGKTYLALVTG 193
>gi|320161265|ref|YP_004174489.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
gi|319995118|dbj|BAJ63889.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
Length = 231
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S I+ E +V+ KPAG + D + T L H++D T G
Sbjct: 10 KSMILFQDEWILVISKPAG--LLSIRDGYNPNLPTIQGVLEPKLGKLWMIHRLDKDTSGI 67
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+VLART E R+ E+KV+K+Y A+
Sbjct: 68 MVLARTSEAHKNLDRQFAERKVRKIYYAI 96
>gi|194761916|ref|XP_001963137.1| GF14093 [Drosophila ananassae]
gi|190616834|gb|EDV32358.1| GF14093 [Drosophila ananassae]
Length = 755
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 396 KIVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLL 454
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P G++
Sbjct: 455 FGRSPKKARQMEQQIRNRQVEKEYICRVEGVFPDGVV 491
>gi|418868743|ref|ZP_13423184.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|392837433|gb|EJA93003.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 319
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|417518918|ref|ZP_12181185.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|353648017|gb|EHC91002.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
Length = 297
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|299740960|ref|XP_001834124.2| hypothetical protein CC1G_08755 [Coprinopsis cinerea okayama7#130]
gi|298404490|gb|EAU87719.2| hypothetical protein CC1G_08755 [Coprinopsis cinerea okayama7#130]
Length = 298
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 228 VVLDKPAG--TSVG------GTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+V++KPAG + +G T D +++ R L L LR H++D T GC+
Sbjct: 29 LVMNKPAGLVSQLGRQLPEMKTRDTLDKVLKQI-ERRLELKEALRPLHRLDTATTGCLAF 87
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA 308
A TQ ++ + +V+K YLAL +
Sbjct: 88 ATTQTSARSLSKQFAQGQVEKSYLALVSG 116
>gi|409250546|ref|YP_006886356.1| pseudouridylate synthase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|267992961|gb|ACY87846.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|320086374|emb|CBY96147.1| pseudouridylate synthase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 347
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 122 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 177
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 178 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 207
>gi|260912693|ref|ZP_05919179.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
dagmatis ATCC 43325]
gi|260633071|gb|EEX51236.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
dagmatis ATCC 43325]
Length = 381
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 228 VVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEY 285
+VL+KP+G +V GG+ N A RAL L H++D T G +++A+ +
Sbjct: 169 LVLNKPSGIAVHGGSGLNF---GVIEALRALRPEARFLELVHRLDRDTSGILLVAKKRSA 225
Query: 286 CSIFHRKIREKKVKKLYLALT 306
H ++REK V+K YLAL
Sbjct: 226 LRNLHEQLREKTVQKDYLALV 246
>gi|148652292|ref|YP_001279385.1| RluA family pseudouridine synthase [Psychrobacter sp. PRwf-1]
gi|148571376|gb|ABQ93435.1| ribosomal large subunit pseudouridine synthase C [Psychrobacter sp.
PRwf-1]
Length = 364
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTE 274
R++ E +VL+KP+G +V G + + E+ S+ L H+ID T
Sbjct: 145 ERVVYEDEGLIVLNKPSGMAVHGGSGLDFGVIEAMRDATSKKY-----LELVHRIDKDTS 199
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +++A+ + + +REK ++K YL L
Sbjct: 200 GLLMIAKKRSTLKVLQEYLREKTIQKHYLCLVKG 233
>gi|54295134|ref|YP_127549.1| ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
gi|53754966|emb|CAH16454.1| Ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
Length = 315
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 21/98 (21%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT----------HQI 269
II S +V++KPAG +V G + +LG+ LR T H++
Sbjct: 89 IIFEDSSLLVINKPAGIAVHGGS-----------GLSLGVIEALRKTRHDLSYLELVHRL 137
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
D T GC++LA+ + H + ++V+K+Y AL T
Sbjct: 138 DRETSGCLLLAKKRSTLRAIHALLEAREVQKIYWALLT 175
>gi|410626607|ref|ZP_11337362.1| tRNA pseudouridine32 synthase [Glaciecola mesophila KMM 241]
gi|410153854|dbj|GAC24131.1| tRNA pseudouridine32 synthase [Glaciecola mesophila KMM 241]
Length = 238
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEG 275
R++ V+DKP G SV D + CA A L L H++D T G
Sbjct: 10 RVVLDHPDFFVIDKPHGISVQNELDAQGILPVMCAQQAVDKLWLV------HRLDKVTSG 63
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP---VGIMTHYMRPINIAPRLVSEG 332
++LA+ + S + + ++K YLAL + P P G ++ M+ I S+G
Sbjct: 64 LLILAKNAQAASTLGKLFEARAIEKYYLALGS-PKPKKKQGTVSGAMKKIRDGKWAFSQG 122
Query: 333 KT 334
T
Sbjct: 123 GT 124
>gi|409991924|ref|ZP_11275147.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
gi|291570540|dbj|BAI92812.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409937215|gb|EKN78656.1| pseudouridine synthase [Arthrospira platensis str. Paraca]
Length = 309
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEES 248
D ++AG L H P P D+ + ++I +V+ KP+G V +E +
Sbjct: 55 ADIELQAGQQLAYHRPPWNEP---DVPLSFQVIYEDADILVVAKPSGLPVIPGGGFLEHT 111
Query: 249 CATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R TP+ H++ T G V+LAR+ S +++R++++ K+YLAL
Sbjct: 112 LLRQLQRKYPQDTPI-PIHRLGRGTSGLVLLARSTVGRSYLTKQMRQRQITKVYLALAEG 170
>gi|437643779|ref|ZP_20808500.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435274476|gb|ELO52587.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
Length = 283
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 58 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 113
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 114 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 143
>gi|432405873|ref|ZP_19648593.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE28]
gi|430932027|gb|ELC52461.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE28]
Length = 319
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + + +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAGLADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|423139575|ref|ZP_17127213.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379052129|gb|EHY70020.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 317
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|417839798|ref|ZP_12485967.1| putative pseudouridine synthase [Haemophilus haemolyticus M19107]
gi|341951770|gb|EGT78325.1| putative pseudouridine synthase [Haemophilus haemolyticus M19107]
Length = 224
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTELVAKQLNVPQ-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|416285730|ref|ZP_11647879.1| 23S rRNA pseudouridylate synthase C [Shigella boydii ATCC 9905]
gi|320179214|gb|EFW54172.1| 23S rRNA pseudouridylate synthase C [Shigella boydii ATCC 9905]
Length = 319
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|262043217|ref|ZP_06016352.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259039444|gb|EEW40580.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 331
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSEVILYEDDHILVLNKPSGTAVHGGSGLSYGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|220915408|ref|YP_002490712.1| RluA family pseudouridine synthase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953262|gb|ACL63646.1| pseudouridine synthase, RluA family [Anaeromyxobacter dehalogenans
2CP-1]
Length = 312
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 227 HVVLDKPAGTSV-------GGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCT 273
++V++KPAG +V GGT N E + A+ R G ++D T
Sbjct: 86 YLVVEKPAGVAVHPLAPGEGGTLANAVAARHPECAEASPEPREGG------AVQRLDLET 139
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
GCV+ AR E H ++ V K+YLAL LP G
Sbjct: 140 SGCVLFARDPEAWEALHAQLGAHTVDKVYLALAVGRLPAG 179
>gi|254361974|ref|ZP_04978105.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|261493691|ref|ZP_05990210.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261494358|ref|ZP_05990852.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|452745541|ref|ZP_21945375.1| ribosomal large subunit pseudouridine synthase A [Mannheimia
haemolytica serotype 6 str. H23]
gi|153093521|gb|EDN74501.1| pseudouridylate synthase [Mannheimia haemolytica PHL213]
gi|261310007|gb|EEY11216.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310691|gb|EEY11875.1| pseudouridylate synthase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452086416|gb|EME02805.1| ribosomal large subunit pseudouridine synthase A [Mannheimia
haemolytica serotype 6 str. H23]
Length = 222
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G +S T + G T P H++D T G ++ A ++
Sbjct: 24 LVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEP---AHRLDMATSGILLFALSKAAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y+AL L
Sbjct: 81 KELKRQFREREPKKHYIALLWGKL 104
>gi|421883173|ref|ZP_16314414.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|379987286|emb|CCF86687.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
Length = 333
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 108 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 163
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 164 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|283784875|ref|YP_003364740.1| ribosomal large subunit pseudouridine synthase C [Citrobacter
rodentium ICC168]
gi|282948329|emb|CBG87914.1| ribosomal large subunit pseudouridine synthase C [Citrobacter
rodentium ICC168]
Length = 317
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|145636754|ref|ZP_01792420.1| hypothetical protein CGSHiHH_06555 [Haemophilus influenzae PittHH]
gi|145270052|gb|EDK09989.1| hypothetical protein CGSHiHH_06555 [Haemophilus influenzae PittHH]
Length = 224
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
++++KP G SV D E+ ++ L + + H++D T G ++LA E +
Sbjct: 13 IIINKPEGISV--HKDQEEQGLTELVAKQLNVPK-VWLVHRLDKVTSGLLILALNAESAA 69
Query: 288 IFHRKIREKKVKKLYLALTT 307
F R E K+ K YLAL+
Sbjct: 70 EFSRLFSEHKIHKTYLALSN 89
>gi|85817437|gb|EAQ38617.1| ribosomal large subunit pseudouridine synthase D [Dokdonia
donghaensis MED134]
Length = 229
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP----LRTTHQIDN 271
N +I +V++K +G V G T ++ S A+ P L H++D
Sbjct: 7 NLNVIYEDNHIIVVNKRSGDIVQGDKTGDLPLSEVVKKYIAVKYNKPGAVYLGVVHRLDR 66
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV--GIMTHYMR 320
T G V+ ART + ++ E++ KK Y AL P P G +TH+++
Sbjct: 67 PTSGIVIFARTSKALPRLNKMFSERQTKKTYWALVKNPPPAESGTLTHFLK 117
>gi|337286557|ref|YP_004626030.1| pseudouridine synthase [Thermodesulfatator indicus DSM 15286]
gi|335359385|gb|AEH45066.1| pseudouridine synthase [Thermodesulfatator indicus DSM 15286]
Length = 232
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 220 IIAVTESHV-VLDKPAGTSV-GGTTDNIEESCATFASRALG--LTTP----LRTTHQIDN 271
+I ++H+ V++KP G V G +T +I + + A L P L H++D
Sbjct: 4 LIIYEDNHLLVVEKPGGLLVQGDSTGDI--TLLSMAKEYLKEKYQKPGNVYLGVVHRLDR 61
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT-TAPLPVGIM 315
T G V+ ART + + REK VKK YLA+ +P P G++
Sbjct: 62 VTSGVVIFARTSKAAQRLAKFFREKLVKKHYLAVVHGSPPPKGLL 106
>gi|309796571|ref|ZP_07690978.1| pseudouridine synthase, RluA family [Escherichia coli MS 145-7]
gi|308119883|gb|EFO57145.1| pseudouridine synthase, RluA family [Escherichia coli MS 145-7]
Length = 319
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|433047223|ref|ZP_20234628.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE120]
gi|431570106|gb|ELI43033.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE120]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|432371808|ref|ZP_19614858.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE11]
gi|430898137|gb|ELC20272.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE11]
Length = 333
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 108 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 163
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 164 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|330846924|ref|XP_003295235.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
gi|325074072|gb|EGC28238.1| hypothetical protein DICPUDRAFT_160487 [Dictyostelium purpureum]
Length = 533
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+A+ + VV+DKP+ V +C F A L H++D T G ++
Sbjct: 254 KIVAMDDQVVVIDKPSSIPVHPCG-RFRHNCVLFILAAEHGINELYGVHRLDRLTSGLLM 312
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
LART + +I+ V K Y A P+G
Sbjct: 313 LARTPDAAKKRASQIQSGDVSKQYFAKVVGKFPIG 347
>gi|437722440|ref|ZP_20829172.1| 23S rRNA pseudouridylate synthase C, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435294133|gb|ELO70780.1| 23S rRNA pseudouridylate synthase C, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
Length = 268
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 43 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 98
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 99 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 128
>gi|429207722|ref|ZP_19198978.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
gi|428189115|gb|EKX57671.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
Length = 349
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 103 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 162
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
R + +K+Y AL
Sbjct: 163 RALSESFRHRNTRKIYWALVAG 184
>gi|416757283|ref|ZP_11863108.1| 23S rRNA pseudouridylate synthase C, partial [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323261040|gb|EGA44633.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
Length = 295
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|221638143|ref|YP_002524405.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
gi|221158924|gb|ACL99903.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
Length = 343
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 97 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 156
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
R + +K+Y AL
Sbjct: 157 RALSESFRHRNTRKIYWALVAG 178
>gi|157146217|ref|YP_001453536.1| 23S rRNA pseudouridylate synthase C [Citrobacter koseri ATCC
BAA-895]
gi|157083422|gb|ABV13100.1| hypothetical protein CKO_01974 [Citrobacter koseri ATCC BAA-895]
Length = 317
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|113953912|ref|YP_730201.1| pseudouridine synthase [Synechococcus sp. CC9311]
gi|113881263|gb|ABI46221.1| pseudouridine synthase RluA PA3246 [Synechococcus sp. CC9311]
Length = 220
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 186 ITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNI 245
++ Q +E + + + VH W+ R + V + +L +P G D+
Sbjct: 1 MSEASQSIEGSSLVGLQVHL----------WHQRFLVVEKPSGLLSQP------GLGDSQ 44
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+S T R + LR H++D T G ++LAR E + E+KV K Y A
Sbjct: 45 SDSLIT---RLQAVRPELRLVHRLDRDTSGLLLLARDPESLKVLGGLFAERKVHKFYAA 100
>gi|450241732|ref|ZP_21899664.1| 23S rRNA pseudouridylate synthase C [Escherichia coli S17]
gi|449323461|gb|EMD13418.1| 23S rRNA pseudouridylate synthase C [Escherichia coli S17]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|425421762|ref|ZP_18802955.1| pseudouridine synthase [Escherichia coli 0.1288]
gi|408346453|gb|EKJ60748.1| pseudouridine synthase [Escherichia coli 0.1288]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|417339195|ref|ZP_12120805.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|357960662|gb|EHJ84433.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
Length = 293
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|422354561|ref|ZP_16435296.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
gi|324017411|gb|EGB86630.1| pseudouridine synthase, RluA family [Escherichia coli MS 117-3]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|415774375|ref|ZP_11486838.1| pseudouridine synthase, RluA family protein [Escherichia coli 3431]
gi|315618256|gb|EFU98846.1| pseudouridine synthase, RluA family protein [Escherichia coli 3431]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|331646343|ref|ZP_08347446.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli M605]
gi|417661682|ref|ZP_12311263.1| pseudouridylate synthase, 23S RNA-specific [Escherichia coli AA86]
gi|330910900|gb|EGH39410.1| pseudouridylate synthase, 23S RNA-specific [Escherichia coli AA86]
gi|331045095|gb|EGI17222.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli M605]
Length = 319
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|432769909|ref|ZP_20004261.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE50]
gi|432960637|ref|ZP_20150757.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE202]
gi|433062309|ref|ZP_20249262.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE125]
gi|431317366|gb|ELG05146.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE50]
gi|431477844|gb|ELH57606.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE202]
gi|431586636|gb|ELI58027.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE125]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|16760064|ref|NP_455681.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142165|ref|NP_805507.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163779|ref|ZP_03349489.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213425012|ref|ZP_03357762.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213580589|ref|ZP_03362415.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213646390|ref|ZP_03376443.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289829597|ref|ZP_06547152.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|378959899|ref|YP_005217385.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|34395803|sp|Q8Z7J7.1|RLUC_SALTI RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|25322405|pir||AE0641 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16502358|emb|CAD08312.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29137794|gb|AAO69356.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|374353771|gb|AEZ45532.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|387773974|ref|ZP_10129254.1| pseudouridine synthase A [Haemophilus parahaemolyticus HK385]
gi|386903061|gb|EIJ67881.1| pseudouridine synthase A [Haemophilus parahaemolyticus HK385]
Length = 222
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G +S T + G T P H++D T G ++ A ++
Sbjct: 24 LVINKPSGLLSVPGNRPEYFDSAMTRVQKKYGFTEP---AHRLDMATSGILLFALSKSAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y+AL L
Sbjct: 81 KELKRQFREREPKKHYIALLWGKL 104
>gi|417372322|ref|ZP_12142645.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
gi|353605594|gb|EHC60057.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Inverness str. R8-3668]
Length = 330
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|333984867|ref|YP_004514077.1| RluA family pseudouridine synthase [Methylomonas methanica MC09]
gi|333808908|gb|AEG01578.1| pseudouridine synthase, RluA family [Methylomonas methanica MC09]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
I+ + +VL+KP+G +V G + + AL P L H++D T G
Sbjct: 98 ILYEDDGFIVLNKPSGFAVHGGS-----GVQSGVIEALRQIRPQQKFLELVHRLDKETSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
C+++A+ + + H R ++K YLAL
Sbjct: 153 CLLVAKKRSVLKVLHELFRGDGIRKTYLAL 182
>gi|424816587|ref|ZP_18241738.1| 23S rRNA pseudouridylate synthase C [Escherichia fergusonii ECD227]
gi|325497607|gb|EGC95466.1| 23S rRNA pseudouridylate synthase C [Escherichia fergusonii ECD227]
Length = 317
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|331652138|ref|ZP_08353157.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli M718]
gi|416342590|ref|ZP_11676754.1| 23S rRNA pseudouridylate synthase C [Escherichia coli EC4100B]
gi|417672403|ref|ZP_12321870.1| pseudouridine synthase, RluA family protein [Shigella dysenteriae
155-74]
gi|417690055|ref|ZP_12339280.1| pseudouridine synthase, RluA family protein [Shigella boydii
5216-82]
gi|419344718|ref|ZP_13886100.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13A]
gi|419349156|ref|ZP_13890509.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13B]
gi|419354259|ref|ZP_13895535.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13C]
gi|419359543|ref|ZP_13900768.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13D]
gi|419364597|ref|ZP_13905769.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13E]
gi|420347441|ref|ZP_14848841.1| pseudouridine synthase, RluA family protein [Shigella boydii
965-58]
gi|432749561|ref|ZP_19984173.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE29]
gi|432813187|ref|ZP_20047032.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE101]
gi|320200981|gb|EFW75565.1| 23S rRNA pseudouridylate synthase C [Escherichia coli EC4100B]
gi|331050416|gb|EGI22474.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli M718]
gi|332089150|gb|EGI94259.1| pseudouridine synthase, RluA family protein [Shigella boydii
5216-82]
gi|332092815|gb|EGI97883.1| pseudouridine synthase, RluA family protein [Shigella dysenteriae
155-74]
gi|378189146|gb|EHX49740.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13A]
gi|378204818|gb|EHX65234.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13B]
gi|378206652|gb|EHX67055.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13C]
gi|378207002|gb|EHX67404.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13D]
gi|378216418|gb|EHX76705.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC13E]
gi|391271390|gb|EIQ30265.1| pseudouridine synthase, RluA family protein [Shigella boydii
965-58]
gi|431298851|gb|ELF88475.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE29]
gi|431356393|gb|ELG43084.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE101]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|291282106|ref|YP_003498924.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O55:H7 str. CB9615]
gi|290761979|gb|ADD55940.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O55:H7 str. CB9615]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|212712798|ref|ZP_03320926.1| hypothetical protein PROVALCAL_03895 [Providencia alcalifaciens DSM
30120]
gi|422017691|ref|ZP_16364254.1| 23S rRNA pseudouridylate synthase C [Providencia alcalifaciens
Dmel2]
gi|212684490|gb|EEB44018.1| hypothetical protein PROVALCAL_03895 [Providencia alcalifaciens DSM
30120]
gi|414105284|gb|EKT66843.1| 23S rRNA pseudouridylate synthase C [Providencia alcalifaciens
Dmel2]
Length = 318
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 22/128 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 94 ILYEDESILVINKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 149
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++R K+++K YLAL APL I+ R +
Sbjct: 150 LLVAKKRSALRALHEQLRLKQMQKDYLALVRGNWQSHTKVVQAPLLKNILQSGERIV--- 206
Query: 326 PRLVSEGK 333
R+ SEGK
Sbjct: 207 -RVSSEGK 213
>gi|200389528|ref|ZP_03216139.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199601973|gb|EDZ00519.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|90021267|ref|YP_527094.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
gi|89950867|gb|ABD80882.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
Length = 321
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ +IA ++V++KPAG +V G + + +A + L H++D T GC
Sbjct: 88 DNAVIADEPGYLVVNKPAGLAVHGGS-GVTLGLIEALRQAFPQYSYLELVHRLDRDTSGC 146
Query: 277 VVLARTQEYCSIFHRKIR-EKKVKKLYLALTTAPLP 311
+++A+ + R EK++ K YLAL P
Sbjct: 147 ILVAKKRSMLRYLQELFRGEKRIHKRYLALVIGRWP 182
>gi|432616008|ref|ZP_19852132.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE75]
gi|431155940|gb|ELE56681.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE75]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|397168144|ref|ZP_10491582.1| pseudouridine synthase, RluA family protein [Enterobacter
radicincitans DSM 16656]
gi|396089679|gb|EJI87251.1| pseudouridine synthase, RluA family protein [Enterobacter
radicincitans DSM 16656]
Length = 317
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVG 313
H++D T G +++A+ + H ++R K+++K YLAL APL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRGKEMQKDYLALVRGQWQSHVKVVQAPLLKN 198
Query: 314 IMTHYMRPINIAPRLVSEGK 333
I+ R + R+ SEGK
Sbjct: 199 ILQSGERIV----RVNSEGK 214
>gi|359299451|ref|ZP_09185290.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402304422|ref|ZP_10823492.1| pseudouridine synthase A [Haemophilus sputorum HK 2154]
gi|400378010|gb|EJP30875.1| pseudouridine synthase A [Haemophilus sputorum HK 2154]
Length = 222
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G +S T + G T P H++D T G ++ A ++
Sbjct: 24 LVINKPSGLLSVPGNRPEYFDSAMTRVQKKYGFTEP---AHRLDMATSGILLFALSKAAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y+AL L
Sbjct: 81 KELKRQFREREPKKHYIALLWGKL 104
>gi|345297836|ref|YP_004827194.1| pseudouridine synthase [Enterobacter asburiae LF7a]
gi|345091773|gb|AEN63409.1| pseudouridine synthase [Enterobacter asburiae LF7a]
Length = 219
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 220 IIAVTESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
+I + H+ V++KP+G SV G D ++S T R + H++D T G +
Sbjct: 15 VILYQDEHIMVVNKPSGLLSVPGRLDEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLA 304
V+A +E R+ RE++ KK Y+A
Sbjct: 72 VVALNKEAERELKRQFREREPKKQYVA 98
>gi|291085563|ref|ZP_06353360.2| ribosomal large subunit pseudouridine synthase [Citrobacter youngae
ATCC 29220]
gi|291071302|gb|EFE09411.1| ribosomal large subunit pseudouridine synthase [Citrobacter youngae
ATCC 29220]
Length = 331
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 108 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 163
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 164 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|215486297|ref|YP_002328728.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O127:H6 str.
E2348/69]
gi|312968838|ref|ZP_07783045.1| pseudouridine synthase, RluA family protein [Escherichia coli
2362-75]
gi|331682589|ref|ZP_08383208.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H299]
gi|417755013|ref|ZP_12403103.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2B]
gi|418996122|ref|ZP_13543728.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1A]
gi|419001417|ref|ZP_13548965.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1B]
gi|419006878|ref|ZP_13554330.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1C]
gi|419012750|ref|ZP_13560111.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC1D]
gi|419017683|ref|ZP_13565001.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1E]
gi|419023313|ref|ZP_13570551.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC2A]
gi|419028173|ref|ZP_13575362.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2C]
gi|419034025|ref|ZP_13581120.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2D]
gi|419038927|ref|ZP_13585979.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2E]
gi|450187545|ref|ZP_21889895.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SEPT362]
gi|215264369|emb|CAS08726.1| 23S rRNA pseudouridy late synthase [Escherichia coli O127:H6 str.
E2348/69]
gi|312286240|gb|EFR14153.1| pseudouridine synthase, RluA family protein [Escherichia coli
2362-75]
gi|331080220|gb|EGI51399.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H299]
gi|377847153|gb|EHU12155.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1A]
gi|377849205|gb|EHU14180.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1C]
gi|377852082|gb|EHU17013.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1B]
gi|377860866|gb|EHU25688.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC1D]
gi|377864641|gb|EHU29434.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC1E]
gi|377867279|gb|EHU32041.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC2A]
gi|377877578|gb|EHU42171.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2B]
gi|377882644|gb|EHU47183.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2D]
gi|377883303|gb|EHU47828.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2C]
gi|377896997|gb|EHU61386.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC2E]
gi|449323597|gb|EMD13551.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SEPT362]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|197117385|ref|YP_002137812.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
gi|197086745|gb|ACH38016.1| RNA pseudouridine synthase, RluA family [Geobacter bemidjiensis
Bem]
Length = 302
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP---LRTTHQIDNCTEGCVVLARTQE 284
+ L+K G SV T D E + A L LR +++D T G ++LA++
Sbjct: 88 ISLNKAPGLSVHRTEDPDEVNLVDLAEALLQKRDGVGRLRPVNRLDKGTSGAIILAKSAV 147
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+F + ++E+ + KLYLAL L
Sbjct: 148 AAGMFGKMVQEEGLGKLYLALVEGKL 173
>gi|26247226|ref|NP_753266.1| 23S rRNA pseudouridylate synthase C [Escherichia coli CFT073]
gi|227886557|ref|ZP_04004362.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 83972]
gi|300974389|ref|ZP_07172601.1| pseudouridine synthase, RluA family [Escherichia coli MS 45-1]
gi|301051128|ref|ZP_07197959.1| pseudouridine synthase, RluA family [Escherichia coli MS 185-1]
gi|331657147|ref|ZP_08358109.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA206]
gi|386628724|ref|YP_006148444.1| 23S rRNA pseudouridylate synthase C [Escherichia coli str. 'clone D
i2']
gi|386633644|ref|YP_006153363.1| 23S rRNA pseudouridylate synthase C [Escherichia coli str. 'clone D
i14']
gi|386638595|ref|YP_006105393.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
ABU 83972]
gi|422366257|ref|ZP_16446732.1| pseudouridine synthase, RluA family [Escherichia coli MS 153-1]
gi|422371582|ref|ZP_16451959.1| pseudouridine synthase, RluA family [Escherichia coli MS 16-3]
gi|432411174|ref|ZP_19653852.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE39]
gi|432431218|ref|ZP_19673659.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE187]
gi|432435750|ref|ZP_19678144.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE188]
gi|432456039|ref|ZP_19698234.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE201]
gi|432494973|ref|ZP_19736788.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE214]
gi|432503811|ref|ZP_19745544.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE220]
gi|432523225|ref|ZP_19760360.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE230]
gi|432568074|ref|ZP_19804595.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE53]
gi|432592223|ref|ZP_19828550.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE60]
gi|432606934|ref|ZP_19843125.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE67]
gi|432650522|ref|ZP_19886281.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE87]
gi|432782944|ref|ZP_20017128.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE63]
gi|432843622|ref|ZP_20076805.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE141]
gi|432897983|ref|ZP_20108814.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE192]
gi|432977716|ref|ZP_20166539.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE209]
gi|432994788|ref|ZP_20183402.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE218]
gi|432999315|ref|ZP_20187851.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE223]
gi|433028083|ref|ZP_20215950.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE109]
gi|433057362|ref|ZP_20244442.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE124]
gi|433086670|ref|ZP_20273062.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE137]
gi|433114945|ref|ZP_20300756.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE153]
gi|433124617|ref|ZP_20310200.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE160]
gi|433138677|ref|ZP_20323957.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE167]
gi|433148572|ref|ZP_20333621.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE174]
gi|433207185|ref|ZP_20390878.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE97]
gi|433211939|ref|ZP_20395548.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE99]
gi|442603891|ref|ZP_21018745.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
Nissle 1917]
gi|34395779|sp|Q8FIP7.1|RLUC_ECOL6 RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|26107627|gb|AAN79826.1|AE016759_100 Ribosomal large subunit pseudouridine synthase C [Escherichia coli
CFT073]
gi|227836761|gb|EEJ47227.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 83972]
gi|300297212|gb|EFJ53597.1| pseudouridine synthase, RluA family [Escherichia coli MS 185-1]
gi|300410632|gb|EFJ94170.1| pseudouridine synthase, RluA family [Escherichia coli MS 45-1]
gi|307553087|gb|ADN45862.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
ABU 83972]
gi|315291063|gb|EFU50426.1| pseudouridine synthase, RluA family [Escherichia coli MS 153-1]
gi|315296716|gb|EFU56011.1| pseudouridine synthase, RluA family [Escherichia coli MS 16-3]
gi|331055395|gb|EGI27404.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA206]
gi|355419623|gb|AER83820.1| 23S rRNA pseudouridylate synthase C [Escherichia coli str. 'clone D
i2']
gi|355424543|gb|AER88739.1| 23S rRNA pseudouridylate synthase C [Escherichia coli str. 'clone D
i14']
gi|430936838|gb|ELC57105.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE39]
gi|430955013|gb|ELC73806.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE187]
gi|430965033|gb|ELC82475.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE188]
gi|430983978|gb|ELD00628.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE201]
gi|431026913|gb|ELD39980.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE214]
gi|431040679|gb|ELD51213.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE220]
gi|431053808|gb|ELD63409.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE230]
gi|431101673|gb|ELE06583.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE53]
gi|431132139|gb|ELE34155.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE60]
gi|431139280|gb|ELE41076.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE67]
gi|431192261|gb|ELE91611.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE87]
gi|431331343|gb|ELG18606.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE63]
gi|431396502|gb|ELG79980.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE141]
gi|431428710|gb|ELH10651.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE192]
gi|431481227|gb|ELH60941.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE209]
gi|431509001|gb|ELH87272.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE218]
gi|431512688|gb|ELH90778.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE223]
gi|431544669|gb|ELI19484.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE109]
gi|431573145|gb|ELI45956.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE124]
gi|431608373|gb|ELI77716.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE137]
gi|431635795|gb|ELJ03963.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE153]
gi|431648611|gb|ELJ15987.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE160]
gi|431663736|gb|ELJ30491.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE167]
gi|431674414|gb|ELJ40576.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE174]
gi|431731897|gb|ELJ95358.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE97]
gi|431735544|gb|ELJ98902.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE99]
gi|441715339|emb|CCQ04722.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
Nissle 1917]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|551786|gb|AAA23442.1| orfX, partial [Escherichia coli]
Length = 285
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|82544448|ref|YP_408395.1| 23S rRNA pseudouridylate synthase C [Shigella boydii Sb227]
gi|110805101|ref|YP_688621.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri 5 str. 8401]
gi|187732109|ref|YP_001880745.1| 23S rRNA pseudouridylate synthase C [Shigella boydii CDC 3083-94]
gi|300918689|ref|ZP_07135269.1| pseudouridine synthase, RluA family [Escherichia coli MS 115-1]
gi|416293391|ref|ZP_11650433.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri CDC 796-83]
gi|417682564|ref|ZP_12331919.1| pseudouridine synthase, RluA family protein [Shigella boydii
3594-74]
gi|420324774|ref|ZP_14826549.1| pseudouridine synthase, RluA family protein [Shigella flexneri
CCH060]
gi|420353115|ref|ZP_14854237.1| pseudouridine synthase, RluA family protein [Shigella boydii
4444-74]
gi|420380521|ref|ZP_14879985.1| pseudouridine synthase, RluA family protein [Shigella dysenteriae
225-75]
gi|421681801|ref|ZP_16121623.1| 23S rRNA pseudouridine synthase [Shigella flexneri 1485-80]
gi|432533309|ref|ZP_19770299.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE234]
gi|81245859|gb|ABB66567.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110614649|gb|ABF03316.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|187429101|gb|ACD08375.1| ribosomal large subunit pseudouridine synthase C [Shigella boydii
CDC 3083-94]
gi|300414163|gb|EFJ97473.1| pseudouridine synthase, RluA family [Escherichia coli MS 115-1]
gi|320186966|gb|EFW61679.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri CDC 796-83]
gi|332094085|gb|EGI99137.1| pseudouridine synthase, RluA family protein [Shigella boydii
3594-74]
gi|391255095|gb|EIQ14247.1| pseudouridine synthase, RluA family protein [Shigella flexneri
CCH060]
gi|391279842|gb|EIQ38524.1| pseudouridine synthase, RluA family protein [Shigella boydii
4444-74]
gi|391302099|gb|EIQ59972.1| pseudouridine synthase, RluA family protein [Shigella dysenteriae
225-75]
gi|404341273|gb|EJZ67683.1| 23S rRNA pseudouridine synthase [Shigella flexneri 1485-80]
gi|431062429|gb|ELD71697.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE234]
Length = 319
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|333999167|ref|YP_004531779.1| ribosomal large subunit pseudouridine synthase family protein
[Treponema primitia ZAS-2]
gi|333740364|gb|AEF85854.1| ribosomal large subunit pseudouridine synthase family protein
[Treponema primitia ZAS-2]
Length = 228
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
RI+ E V ++K G + GT + A R G P+ H++D GC
Sbjct: 7 EERILYADEQCVAVNKRCGEACEGTEKGMVSLPALLEDRFGG---PITAVHRLDVPASGC 63
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP------VGIMTHYM 319
V+ ART + + ++ K +K Y A+ P P G + H++
Sbjct: 64 VLFARTPKALAFLNKAFASGKAQKYYWAVIEMPPPELNLAETGELIHWL 112
>gi|59802102|ref|YP_208814.1| protein RluC [Neisseria gonorrhoeae FA 1090]
gi|194099977|ref|YP_002003116.1| protein RluC [Neisseria gonorrhoeae NCCP11945]
gi|240015038|ref|ZP_04721951.1| RluC [Neisseria gonorrhoeae DGI18]
gi|240122106|ref|ZP_04735068.1| RluC [Neisseria gonorrhoeae PID24-1]
gi|254494662|ref|ZP_05107833.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae 1291]
gi|268593835|ref|ZP_06128002.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae 35/02]
gi|268599970|ref|ZP_06134137.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae MS11]
gi|268602307|ref|ZP_06136474.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID18]
gi|268683306|ref|ZP_06150168.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae SK-92-679]
gi|268687455|ref|ZP_06154317.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae SK-93-1035]
gi|291042839|ref|ZP_06568580.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae DGI2]
gi|293398142|ref|ZP_06642347.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae F62]
gi|385336885|ref|YP_005890832.1| protein RluC [Neisseria gonorrhoeae TCDC-NG08107]
gi|59718997|gb|AAW90402.1| putative ribosomal large subunit pseudouridine synthase C
[Neisseria gonorrhoeae FA 1090]
gi|193935267|gb|ACF31091.1| RluC [Neisseria gonorrhoeae NCCP11945]
gi|226513702|gb|EEH63047.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae 1291]
gi|268547224|gb|EEZ42642.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae 35/02]
gi|268584101|gb|EEZ48777.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae MS11]
gi|268586438|gb|EEZ51114.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID18]
gi|268623590|gb|EEZ55990.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae SK-92-679]
gi|268627739|gb|EEZ60139.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae SK-93-1035]
gi|291013273|gb|EFE05239.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae DGI2]
gi|291611405|gb|EFF40475.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae F62]
gi|317165428|gb|ADV08969.1| RluC [Neisseria gonorrhoeae TCDC-NG08107]
Length = 330
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 96 VVYEDDALLVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|418020970|ref|ZP_12660149.1| pseudouridine synthase, RluA family [Candidatus Regiella
insecticola R5.15]
gi|347603687|gb|EGY28473.1| pseudouridine synthase, RluA family [Candidatus Regiella
insecticola R5.15]
Length = 327
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ ++ ++L+KP G V G + + A RAL L H++D T G
Sbjct: 93 DRILFEDDALLILNKPFGIPVHGGSG--VDFGVIEALRALRPEARFLELVHRLDRDTSGV 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++R KK++K YLAL APL ++ + R + ++
Sbjct: 151 LLIAKKRSALRALHEQLRLKKIQKDYLALVKGHWPSSCKKVQAPLLKNVLQNGGRVVKVS 210
Query: 326 PRLVSEGKT 334
SEGK
Sbjct: 211 ----SEGKV 215
>gi|260776340|ref|ZP_05885235.1| ribosomal large subunit pseudouridine synthase C [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607563|gb|EEX33828.1| ribosomal large subunit pseudouridine synthase C [Vibrio
coralliilyticus ATCC BAA-450]
Length = 314
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II E ++L+KP+GT+V G + A AL P L H+ID T G
Sbjct: 96 IIHEDEHMLILNKPSGTAVHGGS-----GLKFGAIEALRALRPQARFLELVHRIDRDTSG 150
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + + REK V+K Y AL
Sbjct: 151 ILLVAKKRSALRHLQAQFREKTVQKYYFALVMG 183
>gi|240017486|ref|ZP_04724026.1| RluC [Neisseria gonorrhoeae FA6140]
gi|268604570|ref|ZP_06138737.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID1]
gi|268588701|gb|EEZ53377.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID1]
Length = 330
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 96 VVYEDDALLVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|218689038|ref|YP_002397250.1| 23S rRNA pseudouridylate synthase C [Escherichia coli ED1a]
gi|306814065|ref|ZP_07448238.1| 23S rRNA pseudouridylate synthase C [Escherichia coli NC101]
gi|432380794|ref|ZP_19623743.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE15]
gi|432386559|ref|ZP_19629454.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE16]
gi|432513362|ref|ZP_19750595.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE224]
gi|432553123|ref|ZP_19789852.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE47]
gi|432610850|ref|ZP_19847017.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE72]
gi|432645607|ref|ZP_19881405.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE86]
gi|432654707|ref|ZP_19890423.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE93]
gi|432698476|ref|ZP_19933641.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE169]
gi|432745097|ref|ZP_19979792.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE43]
gi|432903954|ref|ZP_20113225.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE194]
gi|432936993|ref|ZP_20135685.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE183]
gi|432971281|ref|ZP_20160154.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE207]
gi|432984814|ref|ZP_20173543.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE215]
gi|433038118|ref|ZP_20225728.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE113]
gi|433082001|ref|ZP_20268473.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE133]
gi|433100590|ref|ZP_20286695.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE145]
gi|433143700|ref|ZP_20328862.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE168]
gi|433187865|ref|ZP_20371980.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE88]
gi|218426602|emb|CAR07430.1| 23S rRNA pseudouridylate synthase [Escherichia coli ED1a]
gi|305852702|gb|EFM53150.1| 23S rRNA pseudouridylate synthase C [Escherichia coli NC101]
gi|430908825|gb|ELC30215.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE16]
gi|430910085|gb|ELC31442.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE15]
gi|431043590|gb|ELD53907.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE224]
gi|431085840|gb|ELD91944.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE47]
gi|431150010|gb|ELE51068.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE72]
gi|431182325|gb|ELE82146.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE86]
gi|431194940|gb|ELE94154.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE93]
gi|431245800|gb|ELF40079.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE169]
gi|431293505|gb|ELF83798.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE43]
gi|431434388|gb|ELH16038.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE194]
gi|431465948|gb|ELH46028.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE183]
gi|431484290|gb|ELH63970.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE207]
gi|431502302|gb|ELH81193.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE215]
gi|431553295|gb|ELI27222.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE113]
gi|431604784|gb|ELI74185.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE133]
gi|431621539|gb|ELI90335.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE145]
gi|431664719|gb|ELJ31452.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE168]
gi|431708056|gb|ELJ72581.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE88]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|161614588|ref|YP_001588553.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|162139595|ref|YP_216121.2| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168467142|ref|ZP_02700984.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|224584309|ref|YP_002638107.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375001739|ref|ZP_09726079.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|375114028|ref|ZP_09759198.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|418761335|ref|ZP_13317480.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418768337|ref|ZP_13324387.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418769831|ref|ZP_13325858.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775929|ref|ZP_13331878.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418780271|ref|ZP_13336160.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418786449|ref|ZP_13342264.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418802491|ref|ZP_13358118.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|419788431|ref|ZP_14314118.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419791268|ref|ZP_14316922.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|437839368|ref|ZP_20846188.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|161363952|gb|ABX67720.1| hypothetical protein SPAB_02338 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195630420|gb|EDX49046.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|224468836|gb|ACN46666.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|322714174|gb|EFZ05745.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|353076427|gb|EHB42187.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|392617615|gb|EIX00037.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392621239|gb|EIX03604.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392731607|gb|EIZ88831.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392739277|gb|EIZ96416.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392740953|gb|EIZ98068.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392746562|gb|EJA03568.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392748119|gb|EJA05109.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392749321|gb|EJA06298.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392777504|gb|EJA34187.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|435297653|gb|ELO73921.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|419153055|ref|ZP_13697637.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6C]
gi|378001954|gb|EHV65010.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6C]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|229132186|ref|ZP_04261043.1| Pseudouridine synthase [Bacillus cereus BDRD-ST196]
gi|228651234|gb|EEL07212.1| Pseudouridine synthase [Bacillus cereus BDRD-ST196]
Length = 307
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|194472684|ref|ZP_03078668.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194459048|gb|EDX47887.1| pseudouridine synthase, RluA family [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|170684091|ref|YP_001744093.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SMS-3-5]
gi|222155834|ref|YP_002555973.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
LF82]
gi|387616387|ref|YP_006119409.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O83:H1 str.
NRG 857C]
gi|170521809|gb|ACB19987.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
SMS-3-5]
gi|222032839|emb|CAP75578.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
LF82]
gi|312945648|gb|ADR26475.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O83:H1 str.
NRG 857C]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|16129049|ref|NP_415604.1| 23S rRNA pseudouridine synthase; specific to U955, U2504, and U2580
[Escherichia coli str. K-12 substr. MG1655]
gi|24112492|ref|NP_707002.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri 2a str. 301]
gi|30062620|ref|NP_836791.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri 2a str.
2457T]
gi|91210238|ref|YP_540224.1| 23S rRNA pseudouridylate synthase C [Escherichia coli UTI89]
gi|110641262|ref|YP_668992.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 536]
gi|117623272|ref|YP_852185.1| 23S rRNA pseudouridylate synthase C [Escherichia coli APEC O1]
gi|157156049|ref|YP_001462319.1| 23S rRNA pseudouridylate synthase C [Escherichia coli E24377A]
gi|157160612|ref|YP_001457930.1| 23S rRNA pseudouridylate synthase C [Escherichia coli HS]
gi|170020519|ref|YP_001725473.1| 23S rRNA pseudouridylate synthase C [Escherichia coli ATCC 8739]
gi|170080737|ref|YP_001730057.1| 23S rRNA pseudouridylate synthase C [Escherichia coli str. K-12
substr. DH10B]
gi|188495899|ref|ZP_03003169.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
53638]
gi|209918340|ref|YP_002292424.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SE11]
gi|218553663|ref|YP_002386576.1| 23S rRNA pseudouridylate synthase C [Escherichia coli IAI1]
gi|218557967|ref|YP_002390880.1| 23S rRNA pseudouridylate synthase C [Escherichia coli S88]
gi|218694619|ref|YP_002402286.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 55989]
gi|218700411|ref|YP_002408040.1| 23S rRNA pseudouridylate synthase C [Escherichia coli IAI39]
gi|237706929|ref|ZP_04537410.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
3_2_53FAA]
gi|238900340|ref|YP_002926136.1| 23S rRNA pseudouridylate synthase C [Escherichia coli BW2952]
gi|251784616|ref|YP_002998920.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|253773891|ref|YP_003036722.1| 23S rRNA pseudouridylate synthase C [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161192|ref|YP_003044300.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B str.
REL606]
gi|254288000|ref|YP_003053748.1| 23S rRNA pseudouridylate synthase [Escherichia coli BL21(DE3)]
gi|260843326|ref|YP_003221104.1| 23S rRNA pseudouridylate synthase rluC [Escherichia coli O103:H2
str. 12009]
gi|260854569|ref|YP_003228460.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
11368]
gi|260867449|ref|YP_003233851.1| 23S rRNA pseudouridylate synthase rluC [Escherichia coli O111:H-
str. 11128]
gi|293409451|ref|ZP_06653027.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B354]
gi|293414379|ref|ZP_06657028.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B185]
gi|293433375|ref|ZP_06661803.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B088]
gi|300816787|ref|ZP_07097007.1| pseudouridine synthase, RluA family [Escherichia coli MS 107-1]
gi|300821134|ref|ZP_07101283.1| pseudouridine synthase, RluA family [Escherichia coli MS 119-7]
gi|300902476|ref|ZP_07120458.1| pseudouridine synthase, RluA family [Escherichia coli MS 84-1]
gi|300928363|ref|ZP_07143897.1| pseudouridine synthase, RluA family [Escherichia coli MS 187-1]
gi|300938652|ref|ZP_07153381.1| pseudouridine synthase, RluA family [Escherichia coli MS 21-1]
gi|300948672|ref|ZP_07162753.1| pseudouridine synthase, RluA family [Escherichia coli MS 116-1]
gi|300956251|ref|ZP_07168560.1| pseudouridine synthase, RluA family [Escherichia coli MS 175-1]
gi|300982570|ref|ZP_07176192.1| pseudouridine synthase, RluA family [Escherichia coli MS 200-1]
gi|301023272|ref|ZP_07187069.1| pseudouridine synthase, RluA family [Escherichia coli MS 69-1]
gi|301029700|ref|ZP_07192754.1| pseudouridine synthase, RluA family [Escherichia coli MS 196-1]
gi|301304976|ref|ZP_07211078.1| pseudouridine synthase, RluA family [Escherichia coli MS 124-1]
gi|301644499|ref|ZP_07244494.1| pseudouridine synthase, RluA family [Escherichia coli MS 146-1]
gi|307310137|ref|ZP_07589787.1| pseudouridine synthase, RluA family [Escherichia coli W]
gi|312971222|ref|ZP_07785400.1| pseudouridine synthase, RluA family protein [Escherichia coli
1827-70]
gi|331641629|ref|ZP_08342764.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H736]
gi|331667486|ref|ZP_08368350.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA271]
gi|331676876|ref|ZP_08377572.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H591]
gi|332279727|ref|ZP_08392140.1| ribosomal large subunit pseudouridine synthase C [Shigella sp. D9]
gi|378713515|ref|YP_005278408.1| RluA family pseudouridine synthase [Escherichia coli KO11FL]
gi|384542717|ref|YP_005726779.1| Ribosomal large subunit pseudouridine synthase C [Shigella flexneri
2002017]
gi|386280193|ref|ZP_10057862.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
4_1_40B]
gi|386596086|ref|YP_006092486.1| RluA family pseudouridine synthase [Escherichia coli DH1]
gi|386598893|ref|YP_006100399.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
IHE3034]
gi|386604960|ref|YP_006111260.1| 23S rRNA pseudouridylate synthase C [Escherichia coli UM146]
gi|386608446|ref|YP_006123932.1| 23S rRNA pseudouridylate synthase [Escherichia coli W]
gi|386613464|ref|YP_006133130.1| pseudouridine synthase RluC [Escherichia coli UMNK88]
gi|386623542|ref|YP_006143270.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O7:K1 str.
CE10]
gi|386701942|ref|YP_006165779.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KO11FL]
gi|386705192|ref|YP_006169039.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
P12b]
gi|386708895|ref|YP_006172616.1| 23S rRNA pseudouridylate synthase C [Escherichia coli W]
gi|387611622|ref|YP_006114738.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
ETEC H10407]
gi|387620795|ref|YP_006128422.1| 23S rRNA pseudouridylate synthase C [Escherichia coli DH1]
gi|388477166|ref|YP_489354.1| 23S rRNA pseudouridylate synthase [Escherichia coli str. K-12
substr. W3110]
gi|404374404|ref|ZP_10979617.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
1_1_43]
gi|407468714|ref|YP_006784844.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482556|ref|YP_006779705.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483108|ref|YP_006770654.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415782843|ref|ZP_11491792.1| pseudouridine synthase, RluA family protein [Escherichia coli
EPECa14]
gi|415794636|ref|ZP_11496467.1| pseudouridine synthase, RluA family protein [Escherichia coli
E128010]
gi|415808973|ref|ZP_11501810.1| pseudouridine synthase, RluA family protein [Escherichia coli
LT-68]
gi|415824305|ref|ZP_11512594.1| pseudouridine synthase, RluA family protein [Escherichia coli
OK1180]
gi|415827314|ref|ZP_11514231.1| pseudouridine synthase, RluA family protein [Escherichia coli
OK1357]
gi|415854422|ref|ZP_11530177.1| pseudouridine synthase, RluA family protein [Shigella flexneri 2a
str. 2457T]
gi|415865761|ref|ZP_11538530.1| pseudouridine synthase, RluA family [Escherichia coli MS 85-1]
gi|415880355|ref|ZP_11545098.1| ribosomal large subunit pseudouridine synthase [Escherichia coli MS
79-10]
gi|417083623|ref|ZP_11951668.1| 23S rRNA pseudouridine synthase [Escherichia coli cloneA_i1]
gi|417124699|ref|ZP_11973157.1| rRNA pseudouridylate synthase C [Escherichia coli 97.0246]
gi|417137127|ref|ZP_11980917.1| rRNA pseudouridylate synthase C [Escherichia coli 97.0259]
gi|417150075|ref|ZP_11989965.1| rRNA pseudouridylate synthase C [Escherichia coli 1.2264]
gi|417154853|ref|ZP_11992982.1| rRNA pseudouridylate synthase C [Escherichia coli 96.0497]
gi|417158847|ref|ZP_11996205.1| rRNA pseudouridylate synthase C [Escherichia coli 99.0741]
gi|417171542|ref|ZP_12001870.1| rRNA pseudouridylate synthase C [Escherichia coli 3.2608]
gi|417180341|ref|ZP_12008049.1| rRNA pseudouridylate synthase C [Escherichia coli 93.0624]
gi|417193171|ref|ZP_12015018.1| rRNA pseudouridylate synthase C [Escherichia coli 4.0522]
gi|417204237|ref|ZP_12018695.1| rRNA pseudouridylate synthase C [Escherichia coli JB1-95]
gi|417224919|ref|ZP_12028210.1| rRNA pseudouridylate synthase C [Escherichia coli 96.154]
gi|417226948|ref|ZP_12029142.1| rRNA pseudouridylate synthase C [Escherichia coli 5.0959]
gi|417235861|ref|ZP_12034680.1| rRNA pseudouridylate synthase C [Escherichia coli 9.0111]
gi|417254458|ref|ZP_12046212.1| rRNA pseudouridylate synthase C [Escherichia coli 4.0967]
gi|417255216|ref|ZP_12046932.1| rRNA pseudouridylate synthase C [Escherichia coli 2.3916]
gi|417266433|ref|ZP_12053801.1| rRNA pseudouridylate synthase C [Escherichia coli 3.3884]
gi|417274421|ref|ZP_12061761.1| rRNA pseudouridylate synthase C [Escherichia coli 2.4168]
gi|417278457|ref|ZP_12065772.1| rRNA pseudouridylate synthase C [Escherichia coli 3.2303]
gi|417289403|ref|ZP_12076686.1| rRNA pseudouridylate synthase C [Escherichia coli B41]
gi|417299161|ref|ZP_12086395.1| rRNA pseudouridylate synthase C [Escherichia coli 900105 (10e)]
gi|417307548|ref|ZP_12094415.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
PCN033]
gi|417580369|ref|ZP_12231185.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_B2F1]
gi|417590955|ref|ZP_12241668.1| pseudouridine synthase, RluA family protein [Escherichia coli
2534-86]
gi|417596148|ref|ZP_12246805.1| pseudouridine synthase, RluA family protein [Escherichia coli
3030-1]
gi|417601504|ref|ZP_12252082.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_94C]
gi|417612311|ref|ZP_12262780.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_EH250]
gi|417617556|ref|ZP_12267984.1| pseudouridine synthase, RluA family protein [Escherichia coli
G58-1]
gi|417622617|ref|ZP_12272934.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_H.1.8]
gi|417633891|ref|ZP_12284107.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_S1191]
gi|417638430|ref|ZP_12288595.1| pseudouridine synthase, RluA family protein [Escherichia coli
TX1999]
gi|417666362|ref|ZP_12315917.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_O31]
gi|417701728|ref|ZP_12350853.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-218]
gi|417706804|ref|ZP_12355853.1| pseudouridine synthase, RluA family protein [Shigella flexneri
VA-6]
gi|417711883|ref|ZP_12360878.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-272]
gi|417716528|ref|ZP_12365456.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-227]
gi|417722509|ref|ZP_12371334.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-304]
gi|417727726|ref|ZP_12376454.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-671]
gi|417732811|ref|ZP_12381475.1| pseudouridine synthase, RluA family protein [Shigella flexneri
2747-71]
gi|417738072|ref|ZP_12386666.1| pseudouridine synthase, RluA family protein [Shigella flexneri
4343-70]
gi|417742726|ref|ZP_12391269.1| 23S rRNA pseudouridine synthase [Shigella flexneri 2930-71]
gi|417804542|ref|ZP_12451545.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
LB226692]
gi|417827217|ref|ZP_12473786.1| 23S rRNA pseudouridine synthase [Shigella flexneri J1713]
gi|417832284|ref|ZP_12478773.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
01-09591]
gi|417864988|ref|ZP_12510033.1| hypothetical protein C22711_1920 [Escherichia coli O104:H4 str.
C227-11]
gi|417944727|ref|ZP_12587967.1| 23S rRNA pseudouridylate synthase C [Escherichia coli XH140A]
gi|417977162|ref|ZP_12617949.1| 23S rRNA pseudouridylate synthase C [Escherichia coli XH001]
gi|418043274|ref|ZP_12681445.1| pseudouridine synthase, RluA family protein [Escherichia coli W26]
gi|418255051|ref|ZP_12879503.1| 23S rRNA pseudouridine synthase [Shigella flexneri 6603-63]
gi|418302112|ref|ZP_12913906.1| pseudouridine synthase, RluA family protein [Escherichia coli
UMNF18]
gi|418942866|ref|ZP_13496109.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H43 str.
T22]
gi|418958585|ref|ZP_13510496.1| pseudouridine synthase, RluA family [Escherichia coli J53]
gi|419141687|ref|ZP_13686437.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6A]
gi|419147488|ref|ZP_13692171.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6B]
gi|419163545|ref|ZP_13708012.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6E]
gi|419169083|ref|ZP_13713477.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC7A]
gi|419174484|ref|ZP_13718335.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7B]
gi|419180060|ref|ZP_13723683.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7C]
gi|419185623|ref|ZP_13729145.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7D]
gi|419190892|ref|ZP_13734358.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC7E]
gi|419196281|ref|ZP_13739683.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC8A]
gi|419202400|ref|ZP_13745615.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8B]
gi|419208577|ref|ZP_13751692.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8C]
gi|419214860|ref|ZP_13757880.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8D]
gi|419220561|ref|ZP_13763509.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8E]
gi|419225960|ref|ZP_13768838.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9A]
gi|419231641|ref|ZP_13774429.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9B]
gi|419237059|ref|ZP_13779802.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9C]
gi|419242596|ref|ZP_13785243.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9D]
gi|419248118|ref|ZP_13790725.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9E]
gi|419260156|ref|ZP_13802594.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10B]
gi|419266158|ref|ZP_13808533.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10C]
gi|419271797|ref|ZP_13814112.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10D]
gi|419277370|ref|ZP_13819631.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10E]
gi|419283246|ref|ZP_13825448.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10F]
gi|419288800|ref|ZP_13830904.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11A]
gi|419294039|ref|ZP_13836091.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11B]
gi|419299491|ref|ZP_13841501.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11C]
gi|419305707|ref|ZP_13847616.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11D]
gi|419310724|ref|ZP_13852595.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11E]
gi|419316032|ref|ZP_13857854.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC12A]
gi|419322048|ref|ZP_13863775.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12B]
gi|419328125|ref|ZP_13869752.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC12C]
gi|419333700|ref|ZP_13875250.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12D]
gi|419338981|ref|ZP_13880465.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12E]
gi|419369413|ref|ZP_13910539.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC14A]
gi|419374953|ref|ZP_13915992.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14B]
gi|419380158|ref|ZP_13921125.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14C]
gi|419385502|ref|ZP_13926390.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14D]
gi|419390667|ref|ZP_13931495.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15A]
gi|419395887|ref|ZP_13936666.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15B]
gi|419401265|ref|ZP_13941992.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15C]
gi|419406387|ref|ZP_13947082.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15D]
gi|419411955|ref|ZP_13952618.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15E]
gi|419804257|ref|ZP_14329417.1| pseudouridine synthase, RluA family protein [Escherichia coli AI27]
gi|419810955|ref|ZP_14335833.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O32:H37 str.
P4]
gi|419864152|ref|ZP_14386635.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O103:H25 str.
CVM9340]
gi|419868684|ref|ZP_14390943.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O103:H2 str.
CVM9450]
gi|419879163|ref|ZP_14400607.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9534]
gi|419883570|ref|ZP_14404668.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9545]
gi|419889059|ref|ZP_14409500.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9570]
gi|419894177|ref|ZP_14414106.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9574]
gi|419900792|ref|ZP_14420206.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM9942]
gi|419905875|ref|ZP_14424820.1| RluA family pseudouridine synthase [Escherichia coli O26:H11 str.
CVM10026]
gi|419918210|ref|ZP_14436422.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KD2]
gi|419925496|ref|ZP_14443334.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 541-15]
gi|419928438|ref|ZP_14446151.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 541-1]
gi|419940733|ref|ZP_14457456.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 75]
gi|419944948|ref|ZP_14461409.1| 23S rRNA pseudouridylate synthase C [Escherichia coli HM605]
gi|419951849|ref|ZP_14468031.1| 23S rRNA pseudouridylate synthase C [Escherichia coli CUMT8]
gi|420090159|ref|ZP_14601934.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9602]
gi|420093918|ref|ZP_14605542.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9634]
gi|420104062|ref|ZP_14614831.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9455]
gi|420109439|ref|ZP_14619572.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9553]
gi|420117270|ref|ZP_14626636.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10021]
gi|420120901|ref|ZP_14630066.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10030]
gi|420127984|ref|ZP_14636553.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10224]
gi|420131005|ref|ZP_14639474.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM9952]
gi|420319685|ref|ZP_14821528.1| pseudouridine synthase, RluA family protein [Shigella flexneri
2850-71]
gi|420330497|ref|ZP_14832181.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-1770]
gi|420341066|ref|ZP_14842573.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-404]
gi|420371325|ref|ZP_14871755.1| pseudouridine synthase, RluA family protein [Shigella flexneri
1235-66]
gi|420384860|ref|ZP_14884231.1| pseudouridine synthase, RluA family protein [Escherichia coli
EPECa12]
gi|420390692|ref|ZP_14889956.1| 23S rRNA pseudouridine synthase [Escherichia coli EPEC C342-62]
gi|421776416|ref|ZP_16213020.1| pseudouridine synthase, RluA family protein [Escherichia coli AD30]
gi|422358774|ref|ZP_16439423.1| pseudouridine synthase, RluA family [Escherichia coli MS 110-3]
gi|422375399|ref|ZP_16455665.1| pseudouridine synthase, RluA family [Escherichia coli MS 60-1]
gi|422380914|ref|ZP_16461087.1| pseudouridine synthase, RluA family [Escherichia coli MS 57-2]
gi|422747885|ref|ZP_16801798.1| RluA family protein pseudouridine synthase [Escherichia coli H252]
gi|422753692|ref|ZP_16807519.1| RluA family protein pseudouridine synthase [Escherichia coli H263]
gi|422762848|ref|ZP_16816604.1| RluA family protein pseudouridine synthase [Escherichia coli E1167]
gi|422770317|ref|ZP_16824008.1| RluA family protein pseudouridine synthase [Escherichia coli E482]
gi|422775031|ref|ZP_16828687.1| RluA family protein pseudouridine synthase [Escherichia coli H120]
gi|422785670|ref|ZP_16838409.1| RluA family protein pseudouridine synthase [Escherichia coli H489]
gi|422790218|ref|ZP_16842923.1| RluA family protein pseudouridine synthase [Escherichia coli TA007]
gi|422817643|ref|ZP_16865857.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
M919]
gi|422833304|ref|ZP_16881371.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
E101]
gi|422839545|ref|ZP_16887517.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H397]
gi|422958731|ref|ZP_16970662.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H494]
gi|422971023|ref|ZP_16974535.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TA124]
gi|422991967|ref|ZP_16982738.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. C227-11]
gi|422993917|ref|ZP_16984681.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. C236-11]
gi|422999096|ref|ZP_16989852.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 09-7901]
gi|423002695|ref|ZP_16993441.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 04-8351]
gi|423009231|ref|ZP_16999969.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-3677]
gi|423023423|ref|ZP_17014126.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4404]
gi|423028571|ref|ZP_17019264.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4522]
gi|423029437|ref|ZP_17020125.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4623]
gi|423037276|ref|ZP_17027950.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423042391|ref|ZP_17033058.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423049082|ref|ZP_17039739.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423052663|ref|ZP_17041471.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423059631|ref|ZP_17048427.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423701931|ref|ZP_17676390.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H730]
gi|423709093|ref|ZP_17683471.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
B799]
gi|424749247|ref|ZP_18177361.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424755313|ref|ZP_18183196.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424767829|ref|ZP_18195137.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424837547|ref|ZP_18262184.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri 5a str.
M90T]
gi|425114452|ref|ZP_18516270.1| pseudouridine synthase [Escherichia coli 8.0566]
gi|425119163|ref|ZP_18520879.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.0569]
gi|425272088|ref|ZP_18663558.1| pseudouridine synthase [Escherichia coli TW15901]
gi|425282594|ref|ZP_18673682.1| pseudouridine synthase [Escherichia coli TW00353]
gi|425287822|ref|ZP_18678728.1| pseudouridine synthase [Escherichia coli 3006]
gi|425378325|ref|ZP_18762617.1| pseudouridine synthase [Escherichia coli EC1865]
gi|427804242|ref|ZP_18971309.1| hypothetical protein BN16_16531 [Escherichia coli chi7122]
gi|427808823|ref|ZP_18975888.1| hypothetical protein BN17_09481 [Escherichia coli]
gi|429723480|ref|ZP_19258362.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429723824|ref|ZP_19258699.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429773559|ref|ZP_19305572.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02030]
gi|429776549|ref|ZP_19308529.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429781773|ref|ZP_19313700.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02092]
gi|429786967|ref|ZP_19318858.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02093]
gi|429792146|ref|ZP_19323998.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02281]
gi|429797359|ref|ZP_19329164.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02318]
gi|429802564|ref|ZP_19334325.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02913]
gi|429808935|ref|ZP_19340647.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-03439]
gi|429812987|ref|ZP_19344667.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-04080]
gi|429818193|ref|ZP_19349829.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-03943]
gi|429912021|ref|ZP_19377977.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429917863|ref|ZP_19383803.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429922901|ref|ZP_19388822.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429923752|ref|ZP_19389668.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429932645|ref|ZP_19398539.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429934248|ref|ZP_19400138.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429939910|ref|ZP_19405784.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429947549|ref|ZP_19413404.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429950182|ref|ZP_19416030.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429958455|ref|ZP_19424284.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432357399|ref|ZP_19600642.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE4]
gi|432361823|ref|ZP_19605006.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE5]
gi|432369140|ref|ZP_19612240.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE10]
gi|432376193|ref|ZP_19619201.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE12]
gi|432391107|ref|ZP_19633965.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE21]
gi|432416134|ref|ZP_19658756.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE44]
gi|432440548|ref|ZP_19682897.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE189]
gi|432445665|ref|ZP_19687968.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE191]
gi|432449356|ref|ZP_19691637.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE193]
gi|432470423|ref|ZP_19712475.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE206]
gi|432480510|ref|ZP_19722471.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE210]
gi|432484772|ref|ZP_19726691.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE212]
gi|432530417|ref|ZP_19767454.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE233]
gi|432563147|ref|ZP_19799765.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE51]
gi|432573105|ref|ZP_19809595.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE55]
gi|432579786|ref|ZP_19816216.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE56]
gi|432587333|ref|ZP_19823699.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE58]
gi|432596945|ref|ZP_19833226.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE62]
gi|432626683|ref|ZP_19862664.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE77]
gi|432636351|ref|ZP_19872233.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE81]
gi|432660306|ref|ZP_19895956.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE111]
gi|432670023|ref|ZP_19905563.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE119]
gi|432674087|ref|ZP_19909572.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE142]
gi|432679559|ref|ZP_19914953.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE143]
gi|432684916|ref|ZP_19920224.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE156]
gi|432691006|ref|ZP_19926244.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE161]
gi|432703700|ref|ZP_19938817.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE171]
gi|432712713|ref|ZP_19947762.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE8]
gi|432731839|ref|ZP_19966674.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE45]
gi|432736581|ref|ZP_19971351.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE42]
gi|432753828|ref|ZP_19988384.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE22]
gi|432758917|ref|ZP_19993416.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE46]
gi|432764451|ref|ZP_19998896.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE48]
gi|432777959|ref|ZP_20012208.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE59]
gi|432786747|ref|ZP_20020911.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE65]
gi|432792353|ref|ZP_20026441.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE78]
gi|432798314|ref|ZP_20032338.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE79]
gi|432801390|ref|ZP_20035372.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE84]
gi|432805206|ref|ZP_20039147.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE91]
gi|432820333|ref|ZP_20054036.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE118]
gi|432826554|ref|ZP_20060208.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE123]
gi|432831057|ref|ZP_20064639.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE135]
gi|432834158|ref|ZP_20067700.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE136]
gi|432860908|ref|ZP_20085992.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE146]
gi|432880807|ref|ZP_20097342.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE154]
gi|432933644|ref|ZP_20133312.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE184]
gi|432954377|ref|ZP_20146496.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE197]
gi|432967227|ref|ZP_20156143.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE203]
gi|433004530|ref|ZP_20192968.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE227]
gi|433011787|ref|ZP_20200190.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE229]
gi|433013287|ref|ZP_20201659.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE104]
gi|433022928|ref|ZP_20210938.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE106]
gi|433032656|ref|ZP_20220424.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE112]
gi|433077216|ref|ZP_20263776.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE131]
gi|433091410|ref|ZP_20277702.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE138]
gi|433129466|ref|ZP_20314928.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE163]
gi|433134264|ref|ZP_20319631.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE166]
gi|433153159|ref|ZP_20338123.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE176]
gi|433162905|ref|ZP_20347662.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE179]
gi|433167932|ref|ZP_20352595.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE180]
gi|433172909|ref|ZP_20357459.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE232]
gi|433193115|ref|ZP_20377123.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE90]
gi|433197683|ref|ZP_20381601.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE94]
gi|433322786|ref|ZP_20400189.1| 23S rRNA pseudouridylate synthase C [Escherichia coli J96]
gi|442590743|ref|ZP_21009502.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599975|ref|ZP_21017677.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443617197|ref|YP_007381053.1| 23S rRNA pseudouridylate synthase C [Escherichia coli APEC O78]
gi|450213278|ref|ZP_21894812.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O08]
gi|76363884|sp|P0AA39.1|RLUC_ECOLI RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|92090792|sp|P0AA40.1|RLUC_SHIFL RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|1787327|gb|AAC74170.1| 23S rRNA pseudouridine(955,2504,2580) synthase [Escherichia coli
str. K-12 substr. MG1655]
gi|4062660|dbj|BAA35894.1| 23S rRNA pseudouridylate synthase [Escherichia coli str. K12
substr. W3110]
gi|24051379|gb|AAN42709.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30040866|gb|AAP16597.1| hypothetical protein S1170 [Shigella flexneri 2a str. 2457T]
gi|91071812|gb|ABE06693.1| hypothetical protein UTI89_C1211 [Escherichia coli UTI89]
gi|110342854|gb|ABG69091.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
536]
gi|115512396|gb|ABJ00471.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|157066292|gb|ABV05547.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
HS]
gi|157078079|gb|ABV17787.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
E24377A]
gi|169755447|gb|ACA78146.1| pseudouridine synthase, RluA family [Escherichia coli ATCC 8739]
gi|169888572|gb|ACB02279.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
str. K-12 substr. DH10B]
gi|188491098|gb|EDU66201.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
53638]
gi|209911599|dbj|BAG76673.1| 23S rRNA pseudouridylate synthase [Escherichia coli SE11]
gi|218351351|emb|CAU97057.1| 23S rRNA pseudouridylate synthase [Escherichia coli 55989]
gi|218360431|emb|CAQ97985.1| 23S rRNA pseudouridylate synthase [Escherichia coli IAI1]
gi|218364736|emb|CAR02426.1| 23S rRNA pseudouridylate synthase [Escherichia coli S88]
gi|218370397|emb|CAR18202.1| 23S rRNA pseudouridylate synthase [Escherichia coli IAI39]
gi|226898139|gb|EEH84398.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
3_2_53FAA]
gi|238859760|gb|ACR61758.1| 23S rRNA pseudouridylate synthase [Escherichia coli BW2952]
gi|242376889|emb|CAQ31607.1| 23S rRNA pseudouridine synthase [Escherichia coli BL21(DE3)]
gi|253324935|gb|ACT29537.1| pseudouridine synthase, RluA family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973093|gb|ACT38764.1| 23S rRNA pseudouridylate synthase [Escherichia coli B str. REL606]
gi|253977307|gb|ACT42977.1| 23S rRNA pseudouridylate synthase [Escherichia coli BL21(DE3)]
gi|257753218|dbj|BAI24720.1| 23S rRNA pseudouridylate synthase rluC [Escherichia coli O26:H11
str. 11368]
gi|257758473|dbj|BAI29970.1| 23S rRNA pseudouridylate synthase rluC [Escherichia coli O103:H2
str. 12009]
gi|257763805|dbj|BAI35300.1| 23S rRNA pseudouridylate synthase rluC [Escherichia coli O111:H-
str. 11128]
gi|260449775|gb|ACX40197.1| pseudouridine synthase, RluA family [Escherichia coli DH1]
gi|281600502|gb|ADA73486.1| Ribosomal large subunit pseudouridine synthase C [Shigella flexneri
2002017]
gi|291324194|gb|EFE63616.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B088]
gi|291434437|gb|EFF07410.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B185]
gi|291469919|gb|EFF12403.1| 23S rRNA pseudouridylate synthase C [Escherichia coli B354]
gi|294492107|gb|ADE90863.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
IHE3034]
gi|299877388|gb|EFI85599.1| pseudouridine synthase, RluA family [Escherichia coli MS 196-1]
gi|300307151|gb|EFJ61671.1| pseudouridine synthase, RluA family [Escherichia coli MS 200-1]
gi|300316920|gb|EFJ66704.1| pseudouridine synthase, RluA family [Escherichia coli MS 175-1]
gi|300397117|gb|EFJ80655.1| pseudouridine synthase, RluA family [Escherichia coli MS 69-1]
gi|300405508|gb|EFJ89046.1| pseudouridine synthase, RluA family [Escherichia coli MS 84-1]
gi|300451827|gb|EFK15447.1| pseudouridine synthase, RluA family [Escherichia coli MS 116-1]
gi|300456437|gb|EFK19930.1| pseudouridine synthase, RluA family [Escherichia coli MS 21-1]
gi|300463621|gb|EFK27114.1| pseudouridine synthase, RluA family [Escherichia coli MS 187-1]
gi|300526433|gb|EFK47502.1| pseudouridine synthase, RluA family [Escherichia coli MS 119-7]
gi|300530561|gb|EFK51623.1| pseudouridine synthase, RluA family [Escherichia coli MS 107-1]
gi|300839694|gb|EFK67454.1| pseudouridine synthase, RluA family [Escherichia coli MS 124-1]
gi|301077163|gb|EFK91969.1| pseudouridine synthase, RluA family [Escherichia coli MS 146-1]
gi|306909855|gb|EFN40349.1| pseudouridine synthase, RluA family [Escherichia coli W]
gi|307627444|gb|ADN71748.1| 23S rRNA pseudouridylate synthase C [Escherichia coli UM146]
gi|309701358|emb|CBJ00659.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
ETEC H10407]
gi|310336424|gb|EFQ01610.1| pseudouridine synthase, RluA family protein [Escherichia coli
1827-70]
gi|313650461|gb|EFS14868.1| pseudouridine synthase, RluA family protein [Shigella flexneri 2a
str. 2457T]
gi|315060363|gb|ADT74690.1| 23S rRNA pseudouridylate synthase [Escherichia coli W]
gi|315135718|dbj|BAJ42877.1| 23S rRNA pseudouridylate synthase C [Escherichia coli DH1]
gi|315253886|gb|EFU33854.1| pseudouridine synthase, RluA family [Escherichia coli MS 85-1]
gi|315287423|gb|EFU46834.1| pseudouridine synthase, RluA family [Escherichia coli MS 110-3]
gi|323156893|gb|EFZ43027.1| pseudouridine synthase, RluA family protein [Escherichia coli
EPECa14]
gi|323163696|gb|EFZ49517.1| pseudouridine synthase, RluA family protein [Escherichia coli
E128010]
gi|323175240|gb|EFZ60853.1| pseudouridine synthase, RluA family protein [Escherichia coli
LT-68]
gi|323175683|gb|EFZ61277.1| pseudouridine synthase, RluA family protein [Escherichia coli
OK1180]
gi|323185792|gb|EFZ71153.1| pseudouridine synthase, RluA family protein [Escherichia coli
OK1357]
gi|323379076|gb|ADX51344.1| pseudouridine synthase, RluA family [Escherichia coli KO11FL]
gi|323942555|gb|EGB38722.1| RluA family protein pseudouridine synthase [Escherichia coli E482]
gi|323947612|gb|EGB43616.1| RluA family protein pseudouridine synthase [Escherichia coli H120]
gi|323953228|gb|EGB49094.1| RluA family protein pseudouridine synthase [Escherichia coli H252]
gi|323957910|gb|EGB53622.1| RluA family protein pseudouridine synthase [Escherichia coli H263]
gi|323962685|gb|EGB58263.1| RluA family protein pseudouridine synthase [Escherichia coli H489]
gi|323973325|gb|EGB68514.1| RluA family protein pseudouridine synthase [Escherichia coli TA007]
gi|324007925|gb|EGB77144.1| pseudouridine synthase, RluA family [Escherichia coli MS 57-2]
gi|324013284|gb|EGB82503.1| pseudouridine synthase, RluA family [Escherichia coli MS 60-1]
gi|324117343|gb|EGC11250.1| RluA family protein pseudouridine synthase [Escherichia coli E1167]
gi|331038427|gb|EGI10647.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H736]
gi|331065071|gb|EGI36966.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA271]
gi|331075565|gb|EGI46863.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli H591]
gi|332102079|gb|EGJ05425.1| ribosomal large subunit pseudouridine synthase C [Shigella sp. D9]
gi|332342633|gb|AEE55967.1| pseudouridine synthase RluC [Escherichia coli UMNK88]
gi|332758246|gb|EGJ88569.1| pseudouridine synthase, RluA family protein [Shigella flexneri
4343-70]
gi|332759613|gb|EGJ89918.1| pseudouridine synthase, RluA family protein [Shigella flexneri
2747-71]
gi|332761433|gb|EGJ91717.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-671]
gi|332767695|gb|EGJ97888.1| 23S rRNA pseudouridine synthase [Shigella flexneri 2930-71]
gi|333004896|gb|EGK24416.1| pseudouridine synthase, RluA family protein [Shigella flexneri
VA-6]
gi|333005699|gb|EGK25217.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-218]
gi|333008291|gb|EGK27765.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-272]
gi|333019472|gb|EGK38755.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-304]
gi|333019781|gb|EGK39053.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-227]
gi|335576031|gb|EGM62289.1| 23S rRNA pseudouridine synthase [Shigella flexneri J1713]
gi|338770924|gb|EGP25677.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
PCN033]
gi|339414210|gb|AEJ55882.1| pseudouridine synthase, RluA family protein [Escherichia coli
UMNF18]
gi|340735059|gb|EGR64148.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
01-09591]
gi|340740784|gb|EGR74962.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
LB226692]
gi|341918277|gb|EGT67891.1| hypothetical protein C22711_1920 [Escherichia coli O104:H4 str.
C227-11]
gi|342363550|gb|EGU27657.1| 23S rRNA pseudouridylate synthase C [Escherichia coli XH140A]
gi|342926462|gb|EGU95184.1| ribosomal large subunit pseudouridine synthase [Escherichia coli MS
79-10]
gi|344193202|gb|EGV47285.1| 23S rRNA pseudouridylate synthase C [Escherichia coli XH001]
gi|345342028|gb|EGW74426.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_B2F1]
gi|345343885|gb|EGW76263.1| pseudouridine synthase, RluA family protein [Escherichia coli
2534-86]
gi|345352107|gb|EGW84357.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_94C]
gi|345357777|gb|EGW89967.1| pseudouridine synthase, RluA family protein [Escherichia coli
3030-1]
gi|345364575|gb|EGW96697.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_EH250]
gi|345379693|gb|EGX11601.1| pseudouridine synthase, RluA family protein [Escherichia coli
G58-1]
gi|345383803|gb|EGX13674.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_H.1.8]
gi|345389198|gb|EGX19004.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_S1191]
gi|345394927|gb|EGX24681.1| pseudouridine synthase, RluA family protein [Escherichia coli
TX1999]
gi|349737280|gb|AEQ11986.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O7:K1 str.
CE10]
gi|354857200|gb|EHF17656.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. C227-11]
gi|354864992|gb|EHF25421.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. C236-11]
gi|354871771|gb|EHF32168.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 04-8351]
gi|354875273|gb|EHF35639.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 09-7901]
gi|354877521|gb|EHF37880.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4404]
gi|354882345|gb|EHF42669.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4522]
gi|354883053|gb|EHF43375.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-3677]
gi|354899354|gb|EHF59503.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354901177|gb|EHF61305.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4623]
gi|354902831|gb|EHF62944.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354905024|gb|EHF65109.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354916251|gb|EHF76225.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354921414|gb|EHF81339.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355352566|gb|EHG01741.1| 23S rRNA pseudouridine synthase [Escherichia coli cloneA_i1]
gi|359331739|dbj|BAL38186.1| 23S rRNA pseudouridylate synthase [Escherichia coli str. K-12
substr. MDS42]
gi|371596560|gb|EHN85398.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H494]
gi|371598888|gb|EHN87679.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TA124]
gi|371608054|gb|EHN96617.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
E101]
gi|371609419|gb|EHN97958.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H397]
gi|375321822|gb|EHS67624.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H43 str.
T22]
gi|377997847|gb|EHV60945.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC6A]
gi|377998507|gb|EHV61598.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6B]
gi|378014048|gb|EHV76961.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC6E]
gi|378018301|gb|EHV81168.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC7A]
gi|378027245|gb|EHV89877.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7C]
gi|378033041|gb|EHV95622.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7D]
gi|378036338|gb|EHV98881.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC7B]
gi|378040955|gb|EHW03418.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC7E]
gi|378050983|gb|EHW13305.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC8A]
gi|378054336|gb|EHW16615.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8B]
gi|378058950|gb|EHW21156.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8C]
gi|378066244|gb|EHW28381.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8D]
gi|378070695|gb|EHW32773.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC8E]
gi|378079260|gb|EHW41238.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9A]
gi|378081359|gb|EHW43314.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9B]
gi|378087922|gb|EHW49778.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9C]
gi|378093947|gb|EHW55751.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9D]
gi|378100283|gb|EHW61980.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC9E]
gi|378111801|gb|EHW73384.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10B]
gi|378115880|gb|EHW77414.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10C]
gi|378120566|gb|EHW82039.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10D]
gi|378132539|gb|EHW93891.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10E]
gi|378134256|gb|EHW95585.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11A]
gi|378136795|gb|EHW98082.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10F]
gi|378144143|gb|EHX05318.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC11B]
gi|378151656|gb|EHX12764.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11D]
gi|378154707|gb|EHX15780.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11C]
gi|378160439|gb|EHX21436.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC11E]
gi|378172197|gb|EHX33056.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12B]
gi|378173418|gb|EHX34258.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC12A]
gi|378174903|gb|EHX35725.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC12C]
gi|378188098|gb|EHX48707.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12D]
gi|378192985|gb|EHX53531.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC12E]
gi|378221088|gb|EHX81339.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC14A]
gi|378223230|gb|EHX83457.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14B]
gi|378231053|gb|EHX91165.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14C]
gi|378234951|gb|EHX95027.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC14D]
gi|378241080|gb|EHY01048.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15A]
gi|378248225|gb|EHY08139.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15B]
gi|378248919|gb|EHY08829.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15C]
gi|378256560|gb|EHY16410.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15D]
gi|378260143|gb|EHY19948.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC15E]
gi|383103360|gb|AFG40869.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
P12b]
gi|383393469|gb|AFH18427.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KO11FL]
gi|383404587|gb|AFH10830.1| 23S rRNA pseudouridylate synthase C [Escherichia coli W]
gi|383466599|gb|EID61620.1| 23S rRNA pseudouridylate synthase C [Shigella flexneri 5a str.
M90T]
gi|383473850|gb|EID65858.1| pseudouridine synthase, RluA family protein [Escherichia coli W26]
gi|384378633|gb|EIE36513.1| pseudouridine synthase, RluA family [Escherichia coli J53]
gi|384472686|gb|EIE56737.1| pseudouridine synthase, RluA family protein [Escherichia coli AI27]
gi|385156249|gb|EIF18247.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O32:H37 str.
P4]
gi|385538889|gb|EIF85739.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
M919]
gi|385706800|gb|EIG43838.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
B799]
gi|385711334|gb|EIG48293.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
H730]
gi|386122749|gb|EIG71357.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
4_1_40B]
gi|386145992|gb|EIG92443.1| rRNA pseudouridylate synthase C [Escherichia coli 97.0246]
gi|386158691|gb|EIH15024.1| rRNA pseudouridylate synthase C [Escherichia coli 97.0259]
gi|386160668|gb|EIH22474.1| rRNA pseudouridylate synthase C [Escherichia coli 1.2264]
gi|386167942|gb|EIH34458.1| rRNA pseudouridylate synthase C [Escherichia coli 96.0497]
gi|386175503|gb|EIH47492.1| rRNA pseudouridylate synthase C [Escherichia coli 99.0741]
gi|386180812|gb|EIH58283.1| rRNA pseudouridylate synthase C [Escherichia coli 3.2608]
gi|386185696|gb|EIH68422.1| rRNA pseudouridylate synthase C [Escherichia coli 93.0624]
gi|386190352|gb|EIH79100.1| rRNA pseudouridylate synthase C [Escherichia coli 4.0522]
gi|386198453|gb|EIH92629.1| rRNA pseudouridylate synthase C [Escherichia coli JB1-95]
gi|386199967|gb|EIH98958.1| rRNA pseudouridylate synthase C [Escherichia coli 96.154]
gi|386208726|gb|EII13227.1| rRNA pseudouridylate synthase C [Escherichia coli 5.0959]
gi|386214814|gb|EII25222.1| rRNA pseudouridylate synthase C [Escherichia coli 9.0111]
gi|386215402|gb|EII31896.1| rRNA pseudouridylate synthase C [Escherichia coli 4.0967]
gi|386227153|gb|EII49403.1| rRNA pseudouridylate synthase C [Escherichia coli 2.3916]
gi|386231243|gb|EII58591.1| rRNA pseudouridylate synthase C [Escherichia coli 3.3884]
gi|386232849|gb|EII64834.1| rRNA pseudouridylate synthase C [Escherichia coli 2.4168]
gi|386238710|gb|EII75645.1| rRNA pseudouridylate synthase C [Escherichia coli 3.2303]
gi|386255441|gb|EIJ05129.1| rRNA pseudouridylate synthase C [Escherichia coli B41]
gi|386257555|gb|EIJ13042.1| rRNA pseudouridylate synthase C [Escherichia coli 900105 (10e)]
gi|388332698|gb|EIK99361.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9534]
gi|388340886|gb|EIL07061.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O103:H25 str.
CVM9340]
gi|388344259|gb|EIL10126.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O103:H2 str.
CVM9450]
gi|388358241|gb|EIL22714.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9545]
gi|388358621|gb|EIL23044.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9570]
gi|388364726|gb|EIL28559.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9574]
gi|388377281|gb|EIL40106.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM9942]
gi|388380385|gb|EIL42989.1| RluA family pseudouridine synthase [Escherichia coli O26:H11 str.
CVM10026]
gi|388386373|gb|EIL48022.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 541-15]
gi|388392009|gb|EIL53446.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KD2]
gi|388402191|gb|EIL62771.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 75]
gi|388405719|gb|EIL66142.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 541-1]
gi|388413690|gb|EIL73680.1| 23S rRNA pseudouridylate synthase C [Escherichia coli CUMT8]
gi|388417138|gb|EIL77002.1| 23S rRNA pseudouridylate synthase C [Escherichia coli HM605]
gi|391252353|gb|EIQ11552.1| pseudouridine synthase, RluA family protein [Shigella flexneri
2850-71]
gi|391256128|gb|EIQ15266.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-1770]
gi|391271079|gb|EIQ29958.1| pseudouridine synthase, RluA family protein [Shigella flexneri
K-404]
gi|391308073|gb|EIQ65795.1| pseudouridine synthase, RluA family protein [Escherichia coli
EPECa12]
gi|391313881|gb|EIQ71448.1| 23S rRNA pseudouridine synthase [Escherichia coli EPEC C342-62]
gi|391319361|gb|EIQ76379.1| pseudouridine synthase, RluA family protein [Shigella flexneri
1235-66]
gi|394386646|gb|EJE64137.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9602]
gi|394386936|gb|EJE64409.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10224]
gi|394397760|gb|EJE73995.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CVM9634]
gi|394402439|gb|EJE78162.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10021]
gi|394405509|gb|EJE80681.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9455]
gi|394406652|gb|EJE81613.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CVM9553]
gi|394427863|gb|EJF00486.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM10030]
gi|394433107|gb|EJF05166.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CVM9952]
gi|397785826|gb|EJK96669.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_O31]
gi|397899177|gb|EJL15552.1| 23S rRNA pseudouridine synthase [Shigella flexneri 6603-63]
gi|404292059|gb|EJZ48902.1| ribosomal large subunit pseudouridine synthase C [Escherichia sp.
1_1_43]
gi|406778270|gb|AFS57694.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407054853|gb|AFS74904.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064749|gb|AFS85796.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408195597|gb|EKI20967.1| pseudouridine synthase [Escherichia coli TW15901]
gi|408204564|gb|EKI29508.1| pseudouridine synthase [Escherichia coli TW00353]
gi|408217041|gb|EKI41328.1| pseudouridine synthase [Escherichia coli 3006]
gi|408304311|gb|EKJ21740.1| pseudouridine synthase [Escherichia coli EC1865]
gi|408458446|gb|EKJ82233.1| pseudouridine synthase, RluA family protein [Escherichia coli AD30]
gi|408571440|gb|EKK47379.1| pseudouridine synthase [Escherichia coli 8.0566]
gi|408572399|gb|EKK48308.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.0569]
gi|412962424|emb|CCK46338.1| hypothetical protein BN16_16531 [Escherichia coli chi7122]
gi|412969002|emb|CCJ43629.1| hypothetical protein BN17_09481 [Escherichia coli]
gi|421942844|gb|EKU00162.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947338|gb|EKU04416.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421950412|gb|EKU07286.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O111:H11 str.
CFSAN001630]
gi|429355356|gb|EKY92046.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02030]
gi|429359268|gb|EKY95933.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02092]
gi|429363169|gb|EKY99812.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429373516|gb|EKZ10060.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02093]
gi|429377257|gb|EKZ13781.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02281]
gi|429378861|gb|EKZ15368.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02318]
gi|429388145|gb|EKZ24571.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-03439]
gi|429390008|gb|EKZ26424.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-02913]
gi|429393847|gb|EKZ30234.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-03943]
gi|429395150|gb|EKZ31518.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429403834|gb|EKZ40115.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. 11-04080]
gi|429404952|gb|EKZ41219.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429408940|gb|EKZ45174.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429417015|gb|EKZ53166.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429421843|gb|EKZ57964.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429423584|gb|EKZ59692.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429425655|gb|EKZ61744.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429432742|gb|EKZ68779.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429442650|gb|EKZ78606.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447554|gb|EKZ83472.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429452209|gb|EKZ88095.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429454606|gb|EKZ90465.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O104:H4 str. Ec11-9941]
gi|430878941|gb|ELC02302.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE4]
gi|430887767|gb|ELC10506.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE10]
gi|430889283|gb|ELC11951.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE5]
gi|430900821|gb|ELC22839.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE12]
gi|430921725|gb|ELC42549.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE21]
gi|430941915|gb|ELC62055.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE44]
gi|430968613|gb|ELC85839.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE189]
gi|430974210|gb|ELC91143.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE191]
gi|430982488|gb|ELC99178.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE193]
gi|430999601|gb|ELD15683.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE206]
gi|431009457|gb|ELD24077.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE210]
gi|431017360|gb|ELD30870.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE212]
gi|431056256|gb|ELD65776.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE233]
gi|431096661|gb|ELE02122.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE51]
gi|431107188|gb|ELE11374.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE56]
gi|431110313|gb|ELE14240.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE55]
gi|431122594|gb|ELE25461.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE58]
gi|431132730|gb|ELE34729.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE62]
gi|431164631|gb|ELE65022.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE77]
gi|431173245|gb|ELE73326.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE81]
gi|431202178|gb|ELF00874.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE111]
gi|431212553|gb|ELF10480.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE119]
gi|431216593|gb|ELF14190.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE142]
gi|431223483|gb|ELF20730.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE156]
gi|431223751|gb|ELF20997.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE143]
gi|431228800|gb|ELF25463.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE161]
gi|431245527|gb|ELF39812.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE171]
gi|431258846|gb|ELF51609.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE8]
gi|431276901|gb|ELF67916.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE45]
gi|431284966|gb|ELF75807.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE42]
gi|431304398|gb|ELF92927.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE22]
gi|431310235|gb|ELF98427.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE46]
gi|431312294|gb|ELG00298.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE48]
gi|431329282|gb|ELG16580.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE59]
gi|431340793|gb|ELG27814.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE65]
gi|431340931|gb|ELG27951.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE78]
gi|431344465|gb|ELG31403.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE79]
gi|431349503|gb|ELG36332.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE84]
gi|431356818|gb|ELG43508.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE91]
gi|431369473|gb|ELG55694.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE118]
gi|431373678|gb|ELG59281.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE123]
gi|431379403|gb|ELG64337.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE135]
gi|431387039|gb|ELG70992.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE136]
gi|431406917|gb|ELG90136.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE146]
gi|431413035|gb|ELG95834.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE154]
gi|431455286|gb|ELH35642.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE184]
gi|431469675|gb|ELH49604.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE197]
gi|431473199|gb|ELH53033.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE203]
gi|431516903|gb|ELH94501.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE229]
gi|431517851|gb|ELH95373.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE227]
gi|431533975|gb|ELI10466.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE104]
gi|431538937|gb|ELI14916.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE106]
gi|431558012|gb|ELI31694.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE112]
gi|431599599|gb|ELI69304.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE131]
gi|431612951|gb|ELI82156.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE138]
gi|431649875|gb|ELJ17214.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE163]
gi|431660576|gb|ELJ27445.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE166]
gi|431677392|gb|ELJ43469.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE176]
gi|431690823|gb|ELJ56297.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE179]
gi|431692495|gb|ELJ57931.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE180]
gi|431695291|gb|ELJ60606.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE232]
gi|431719183|gb|ELJ83243.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE90]
gi|431724361|gb|ELJ88286.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE94]
gi|432348839|gb|ELL43282.1| 23S rRNA pseudouridylate synthase C [Escherichia coli J96]
gi|441609011|emb|CCP95415.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441651192|emb|CCQ03167.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443421705|gb|AGC86609.1| 23S rRNA pseudouridylate synthase C [Escherichia coli APEC O78]
gi|449320960|gb|EMD10979.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O08]
Length = 319
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|410622784|ref|ZP_11333608.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157657|dbj|GAC28982.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 315
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
S II + +V +KP+G +V GG+ N RAL L H++D T G
Sbjct: 91 SHIIFEDDRIIVFNKPSGLAVHGGSGLNF---GVIEGLRALRPQHQFLELVHRLDRDTSG 147
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
C+++A+ + H ++R ++V K Y AL P
Sbjct: 148 CLLIAKKRSALRDLHEQLRSRQVDKRYHALVVGEWP 183
>gi|418845503|ref|ZP_13400287.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418858583|ref|ZP_13413197.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418863884|ref|ZP_13418420.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392812876|gb|EJA68852.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392831733|gb|EJA87360.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392832554|gb|EJA88174.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|422765652|ref|ZP_16819379.1| RluA family protein pseudouridine synthase [Escherichia coli E1520]
gi|323937826|gb|EGB34090.1| RluA family protein pseudouridine synthase [Escherichia coli E1520]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|168767745|ref|ZP_02792752.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4486]
gi|189363263|gb|EDU81682.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4486]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|197120696|ref|YP_002132647.1| pseudouridine synthase [Anaeromyxobacter sp. K]
gi|196170545|gb|ACG71518.1| pseudouridine synthase, RluA family [Anaeromyxobacter sp. K]
Length = 312
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 227 HVVLDKPAGTSV-------GGTTDNI------EESCATFASRALGLTTPLRTTHQIDNCT 273
++V++KPAG +V GGT N E + A+ R G ++D T
Sbjct: 86 YLVVEKPAGVAVHPLAPGEGGTLANAVAARHPECAEASPEPREGG------AVQRLDLET 139
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
GCV+ AR E H ++ V K+YLAL LP G
Sbjct: 140 SGCVLFARDPEAWEALHAQLGAHTVDKVYLALAVGRLPAG 179
>gi|146278539|ref|YP_001168698.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17025]
gi|145556780|gb|ABP71393.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17025]
Length = 346
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KPAG S GG+ + G + H++D T G +VLART
Sbjct: 100 IVLNKPAGLPSQGGSGQGERHVDGLTEALKFGYKERPKLVHRLDKDTSGVLVLARTDRVA 159
Query: 287 SIFHRKIREKKVKKLYLALTTA 308
R + +K+Y AL
Sbjct: 160 RALSESFRHRNTRKIYWALVAG 181
>gi|33151828|ref|NP_873181.1| 23S rRNA pseudouridylate synthase C [Haemophilus ducreyi 35000HP]
gi|34395752|sp|P59835.1|RLUC_HAEDU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|33148049|gb|AAP95570.1| ribosomal large subunit pseudouridine synthase C [Haemophilus
ducreyi 35000HP]
Length = 320
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+G V G S +F AL P L H+ID T G +++A+
Sbjct: 106 LVLNKPSGIGVHGG------SGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKK 159
Query: 283 QEYCSIFHRKIREKKVKKLYLAL 305
+ H ++REK V+K YLAL
Sbjct: 160 RSALRALHEQLREKVVQKDYLAL 182
>gi|15801203|ref|NP_287220.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EDL933]
gi|15830718|ref|NP_309491.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
Sakai]
gi|195935476|ref|ZP_03080858.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EC4024]
gi|208807624|ref|ZP_03249961.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4206]
gi|208816352|ref|ZP_03257531.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4045]
gi|209400210|ref|YP_002269931.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EC4115]
gi|217328324|ref|ZP_03444406.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. TW14588]
gi|218704495|ref|YP_002412014.1| 23S rRNA pseudouridylate synthase C [Escherichia coli UMN026]
gi|254792468|ref|YP_003077305.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
TW14359]
gi|261227010|ref|ZP_05941291.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256244|ref|ZP_05948777.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. FRIK966]
gi|293404372|ref|ZP_06648366.1| 23S rRNA pseudouridylate synthase C [Escherichia coli FVEC1412]
gi|298380151|ref|ZP_06989756.1| 23S rRNA pseudouridylate synthase C [Escherichia coli FVEC1302]
gi|300899606|ref|ZP_07117845.1| pseudouridine synthase, RluA family [Escherichia coli MS 198-1]
gi|331662494|ref|ZP_08363417.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA143]
gi|386618660|ref|YP_006138240.1| 23S rRNA pseudouridylate synthase C [Escherichia coli NA114]
gi|387506215|ref|YP_006158471.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
RM12579]
gi|387829038|ref|YP_003348975.1| 23S rRNA pseudouridylate synthase [Escherichia coli SE15]
gi|387881968|ref|YP_006312270.1| 23S rRNA pseudouridylate synthase C [Escherichia coli Xuzhou21]
gi|416310182|ref|ZP_11656285.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
1044]
gi|416321216|ref|ZP_11663358.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EC1212]
gi|416330846|ref|ZP_11669744.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
1125]
gi|416782245|ref|ZP_11877682.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
G5101]
gi|416793444|ref|ZP_11882605.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H- str.
493-89]
gi|416804711|ref|ZP_11887466.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H- str.
H 2687]
gi|416815832|ref|ZP_11892170.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
3256-97]
gi|416825649|ref|ZP_11896758.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
USDA 5905]
gi|416836412|ref|ZP_11902027.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
LSU-61]
gi|417586015|ref|ZP_12236788.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_C165-02]
gi|417628088|ref|ZP_12278335.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_MHI813]
gi|419044375|ref|ZP_13591341.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3A]
gi|419050143|ref|ZP_13597046.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3B]
gi|419056301|ref|ZP_13603140.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3C]
gi|419061720|ref|ZP_13608485.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3D]
gi|419068393|ref|ZP_13614261.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3E]
gi|419079739|ref|ZP_13625216.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4A]
gi|419085411|ref|ZP_13630808.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4B]
gi|419091349|ref|ZP_13636663.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4C]
gi|419097393|ref|ZP_13642626.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4D]
gi|419103193|ref|ZP_13648352.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4E]
gi|419108592|ref|ZP_13653689.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4F]
gi|419114047|ref|ZP_13659077.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5A]
gi|419119689|ref|ZP_13664667.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5B]
gi|419125369|ref|ZP_13670265.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5C]
gi|419130933|ref|ZP_13675780.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5D]
gi|419135731|ref|ZP_13680537.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC5E]
gi|419935963|ref|ZP_14453005.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 576-1]
gi|420268671|ref|ZP_14771067.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA22]
gi|420274573|ref|ZP_14776894.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA40]
gi|420279659|ref|ZP_14781921.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW06591]
gi|420285814|ref|ZP_14788025.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW10246]
gi|420291583|ref|ZP_14793739.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW11039]
gi|420297249|ref|ZP_14799333.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09109]
gi|420303391|ref|ZP_14805410.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW10119]
gi|420308827|ref|ZP_14810789.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1738]
gi|420314289|ref|ZP_14816190.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1734]
gi|421811498|ref|ZP_16247281.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
8.0416]
gi|421817654|ref|ZP_16253198.1| pseudouridine synthase, RluA family protein [Escherichia coli
10.0821]
gi|421823178|ref|ZP_16258599.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK920]
gi|421829937|ref|ZP_16265258.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA7]
gi|422332110|ref|ZP_16413124.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
4_1_47FAA]
gi|422828658|ref|ZP_16876828.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
B093]
gi|423684628|ref|ZP_17659462.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA31]
gi|424076378|ref|ZP_17813635.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA505]
gi|424082732|ref|ZP_17819505.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA517]
gi|424089223|ref|ZP_17825419.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1996]
gi|424095615|ref|ZP_17831267.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1985]
gi|424101999|ref|ZP_17837068.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1990]
gi|424108789|ref|ZP_17843279.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
93-001]
gi|424114640|ref|ZP_17848710.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA3]
gi|424120817|ref|ZP_17854431.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA5]
gi|424127020|ref|ZP_17860152.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA9]
gi|424133168|ref|ZP_17865889.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA10]
gi|424139758|ref|ZP_17871939.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA14]
gi|424146208|ref|ZP_17877857.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA15]
gi|424152284|ref|ZP_17883443.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA24]
gi|424206014|ref|ZP_17888882.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA25]
gi|424282296|ref|ZP_17894766.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA28]
gi|424432532|ref|ZP_17900531.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA32]
gi|424454705|ref|ZP_17906143.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA33]
gi|424461041|ref|ZP_17911839.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA39]
gi|424467496|ref|ZP_17917596.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA41]
gi|424474046|ref|ZP_17923632.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA42]
gi|424479945|ref|ZP_17929115.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW07945]
gi|424486026|ref|ZP_17934808.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09098]
gi|424492265|ref|ZP_17940470.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09195]
gi|424499249|ref|ZP_17946438.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4203]
gi|424505390|ref|ZP_17952087.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4196]
gi|424511769|ref|ZP_17957875.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW14313]
gi|424519253|ref|ZP_17963603.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW14301]
gi|424525137|ref|ZP_17969085.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4421]
gi|424531329|ref|ZP_17974887.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4422]
gi|424537295|ref|ZP_17980473.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4013]
gi|424543243|ref|ZP_17985953.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4402]
gi|424549561|ref|ZP_17991670.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4439]
gi|424555792|ref|ZP_17997429.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4436]
gi|424562140|ref|ZP_18003352.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4437]
gi|424568203|ref|ZP_18009026.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4448]
gi|424574360|ref|ZP_18014698.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1845]
gi|424580270|ref|ZP_18020133.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1863]
gi|425096962|ref|ZP_18499925.1| pseudouridine synthase, RluA family protein [Escherichia coli
3.4870]
gi|425103193|ref|ZP_18505729.1| pseudouridine synthase, RluA family protein [Escherichia coli
5.2239]
gi|425108983|ref|ZP_18511159.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
6.0172]
gi|425124721|ref|ZP_18526208.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.0586]
gi|425130778|ref|ZP_18531805.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.2524]
gi|425137145|ref|ZP_18537797.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
10.0833]
gi|425142971|ref|ZP_18543201.1| pseudouridine synthase, RluA family protein [Escherichia coli
10.0869]
gi|425149223|ref|ZP_18549038.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.0221]
gi|425154944|ref|ZP_18554421.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA34]
gi|425161404|ref|ZP_18560509.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA506]
gi|425166965|ref|ZP_18565702.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA507]
gi|425173209|ref|ZP_18571533.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA504]
gi|425179082|ref|ZP_18577065.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1999]
gi|425185322|ref|ZP_18582852.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1997]
gi|425192079|ref|ZP_18589129.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE1487]
gi|425198433|ref|ZP_18594983.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE037]
gi|425205019|ref|ZP_18601071.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK2001]
gi|425210750|ref|ZP_18606408.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA4]
gi|425216816|ref|ZP_18612050.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA23]
gi|425223394|ref|ZP_18618158.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA49]
gi|425229605|ref|ZP_18623926.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA45]
gi|425235897|ref|ZP_18629789.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TT12B]
gi|425241902|ref|ZP_18635457.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
MA6]
gi|425247996|ref|ZP_18641121.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
5905]
gi|425253771|ref|ZP_18646560.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
CB7326]
gi|425259986|ref|ZP_18652290.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC96038]
gi|425266089|ref|ZP_18657945.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
5412]
gi|425293660|ref|ZP_18684127.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA38]
gi|425304617|ref|ZP_18694379.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
N1]
gi|425310316|ref|ZP_18699711.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1735]
gi|425316248|ref|ZP_18705243.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1736]
gi|425322341|ref|ZP_18710925.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1737]
gi|425328539|ref|ZP_18716672.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1846]
gi|425334736|ref|ZP_18722368.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1847]
gi|425341132|ref|ZP_18728275.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1848]
gi|425346988|ref|ZP_18733712.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1849]
gi|425353236|ref|ZP_18739532.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1850]
gi|425359222|ref|ZP_18745108.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1856]
gi|425365354|ref|ZP_18750795.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1862]
gi|425371763|ref|ZP_18756644.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1864]
gi|425384569|ref|ZP_18768364.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1866]
gi|425391269|ref|ZP_18774642.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1868]
gi|425397377|ref|ZP_18780334.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1869]
gi|425403348|ref|ZP_18785875.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1870]
gi|425409897|ref|ZP_18791965.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE098]
gi|425416230|ref|ZP_18797771.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK523]
gi|425427343|ref|ZP_18808303.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
0.1304]
gi|428946025|ref|ZP_19018550.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.1467]
gi|428952152|ref|ZP_19024187.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.1042]
gi|428958043|ref|ZP_19029633.1| pseudouridine synthase, RluA family protein [Escherichia coli
89.0511]
gi|428964398|ref|ZP_19035483.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.0091]
gi|428970472|ref|ZP_19041034.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.0039]
gi|428976981|ref|ZP_19047059.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.2281]
gi|428982710|ref|ZP_19052353.1| pseudouridine synthase, RluA family protein [Escherichia coli
93.0055]
gi|428988950|ref|ZP_19058145.1| pseudouridine synthase, RluA family protein [Escherichia coli
93.0056]
gi|428994795|ref|ZP_19063609.1| pseudouridine synthase, RluA family protein [Escherichia coli
94.0618]
gi|429000858|ref|ZP_19069281.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0183]
gi|429007041|ref|ZP_19074844.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.1288]
gi|429013506|ref|ZP_19080652.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0943]
gi|429019600|ref|ZP_19086299.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0428]
gi|429025325|ref|ZP_19091640.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0427]
gi|429031532|ref|ZP_19097319.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0939]
gi|429037695|ref|ZP_19103052.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0932]
gi|429043787|ref|ZP_19108701.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0107]
gi|429049420|ref|ZP_19114060.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0003]
gi|429054744|ref|ZP_19119193.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.1742]
gi|429060461|ref|ZP_19124567.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0007]
gi|429066083|ref|ZP_19129847.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0672]
gi|429072456|ref|ZP_19135784.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
99.0678]
gi|429077828|ref|ZP_19141022.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0713]
gi|429825208|ref|ZP_19356586.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0109]
gi|429831551|ref|ZP_19362257.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0010]
gi|432353030|ref|ZP_19596313.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE2]
gi|432396940|ref|ZP_19639725.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE25]
gi|432401261|ref|ZP_19644015.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE26]
gi|432421177|ref|ZP_19663732.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE178]
gi|432425317|ref|ZP_19667832.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE181]
gi|432460089|ref|ZP_19702245.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE204]
gi|432475179|ref|ZP_19717185.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE208]
gi|432488786|ref|ZP_19730670.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE213]
gi|432499322|ref|ZP_19741094.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE216]
gi|432521759|ref|ZP_19758914.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE228]
gi|432537127|ref|ZP_19774044.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE235]
gi|432542456|ref|ZP_19779312.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE236]
gi|432547926|ref|ZP_19784713.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE237]
gi|432558142|ref|ZP_19794830.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE49]
gi|432601611|ref|ZP_19837858.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE66]
gi|432621210|ref|ZP_19857251.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE76]
gi|432630686|ref|ZP_19866630.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE80]
gi|432640287|ref|ZP_19876126.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE83]
gi|432665359|ref|ZP_19900943.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE116]
gi|432693809|ref|ZP_19929019.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE162]
gi|432709984|ref|ZP_19945048.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE6]
gi|432718119|ref|ZP_19953103.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE9]
gi|432722567|ref|ZP_19957490.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE17]
gi|432727155|ref|ZP_19962036.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE18]
gi|432740841|ref|ZP_19975562.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE23]
gi|432774262|ref|ZP_20008546.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE54]
gi|432814721|ref|ZP_20048511.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE115]
gi|432838803|ref|ZP_20072292.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE140]
gi|432849536|ref|ZP_20080758.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE144]
gi|432874243|ref|ZP_20093380.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE147]
gi|432885554|ref|ZP_20100075.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE158]
gi|432911630|ref|ZP_20117905.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE190]
gi|432918279|ref|ZP_20122684.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE173]
gi|432925569|ref|ZP_20127598.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE175]
gi|432946379|ref|ZP_20142008.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE196]
gi|432980529|ref|ZP_20169307.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE211]
gi|432990154|ref|ZP_20178820.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE217]
gi|433018042|ref|ZP_20206299.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE105]
gi|433042584|ref|ZP_20230103.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE117]
gi|433052448|ref|ZP_20239668.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE122]
gi|433067334|ref|ZP_20254154.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE128]
gi|433095954|ref|ZP_20282163.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE139]
gi|433105176|ref|ZP_20291190.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE148]
gi|433110380|ref|ZP_20296251.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE150]
gi|433158053|ref|ZP_20342914.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE177]
gi|433177608|ref|ZP_20362053.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE82]
gi|433202619|ref|ZP_20386414.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE95]
gi|444923855|ref|ZP_21243439.1| pseudouridine synthase, RluA family protein [Escherichia coli
09BKT078844]
gi|444930061|ref|ZP_21249180.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0814]
gi|444935277|ref|ZP_21254171.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0815]
gi|444940917|ref|ZP_21259532.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0816]
gi|444946453|ref|ZP_21264843.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0839]
gi|444952117|ref|ZP_21270302.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0848]
gi|444957576|ref|ZP_21275529.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1753]
gi|444962838|ref|ZP_21280546.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1775]
gi|444968549|ref|ZP_21285999.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1793]
gi|444974013|ref|ZP_21291252.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1805]
gi|444979237|ref|ZP_21296222.1| pseudouridine synthase, RluA family protein [Escherichia coli ATCC
700728]
gi|444984884|ref|ZP_21301728.1| pseudouridine synthase, RluA family protein [Escherichia coli PA11]
gi|444990131|ref|ZP_21306848.1| pseudouridine synthase, RluA family protein [Escherichia coli PA19]
gi|444995343|ref|ZP_21311919.1| pseudouridine synthase, RluA family protein [Escherichia coli PA13]
gi|445001031|ref|ZP_21317471.1| pseudouridine synthase, RluA family protein [Escherichia coli PA2]
gi|445006452|ref|ZP_21322766.1| pseudouridine synthase, RluA family protein [Escherichia coli PA47]
gi|445011547|ref|ZP_21327717.1| pseudouridine synthase, RluA family protein [Escherichia coli PA48]
gi|445017299|ref|ZP_21333328.1| pseudouridine synthase, RluA family protein [Escherichia coli PA8]
gi|445022849|ref|ZP_21338747.1| pseudouridine synthase, RluA family protein [Escherichia coli
7.1982]
gi|445028026|ref|ZP_21343779.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1781]
gi|445033607|ref|ZP_21349204.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1762]
gi|445039289|ref|ZP_21354732.1| pseudouridine synthase, RluA family protein [Escherichia coli PA35]
gi|445044570|ref|ZP_21359885.1| pseudouridine synthase, RluA family protein [Escherichia coli
3.4880]
gi|445050118|ref|ZP_21365252.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0083]
gi|445055794|ref|ZP_21370720.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0670]
gi|452971512|ref|ZP_21969739.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EC4009]
gi|34395798|sp|Q8X8J3.1|RLUC_ECO57 RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|12514630|gb|AAG55832.1|AE005319_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13360928|dbj|BAB34887.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|208727425|gb|EDZ77026.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4206]
gi|208733000|gb|EDZ81688.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4045]
gi|209161610|gb|ACI39043.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. EC4115]
gi|209773278|gb|ACI84951.1| hypothetical protein ECs1464 [Escherichia coli]
gi|209773280|gb|ACI84952.1| hypothetical protein ECs1464 [Escherichia coli]
gi|209773282|gb|ACI84953.1| hypothetical protein ECs1464 [Escherichia coli]
gi|209773284|gb|ACI84954.1| hypothetical protein ECs1464 [Escherichia coli]
gi|209773286|gb|ACI84955.1| hypothetical protein ECs1464 [Escherichia coli]
gi|217318751|gb|EEC27177.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. TW14588]
gi|218431592|emb|CAR12471.1| 23S rRNA pseudouridylate synthase [Escherichia coli UMN026]
gi|254591868|gb|ACT71229.1| Ribosomal large subunit pseudouridine synthase C [Escherichia coli
O157:H7 str. TW14359]
gi|281178195|dbj|BAI54525.1| 23S rRNA pseudouridylate synthase [Escherichia coli SE15]
gi|291428958|gb|EFF01983.1| 23S rRNA pseudouridylate synthase C [Escherichia coli FVEC1412]
gi|298279849|gb|EFI21357.1| 23S rRNA pseudouridylate synthase C [Escherichia coli FVEC1302]
gi|300356877|gb|EFJ72747.1| pseudouridine synthase, RluA family [Escherichia coli MS 198-1]
gi|320189769|gb|EFW64425.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
EC1212]
gi|320637537|gb|EFX07337.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
G5101]
gi|320643098|gb|EFX12299.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H- str.
493-89]
gi|320648556|gb|EFX17211.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H- str.
H 2687]
gi|320653870|gb|EFX21944.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659350|gb|EFX26919.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
USDA 5905]
gi|320664485|gb|EFX31636.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
LSU-61]
gi|326339308|gb|EGD63122.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
1125]
gi|326344731|gb|EGD68479.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O157:H7 str.
1044]
gi|331060916|gb|EGI32880.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Escherichia coli TA143]
gi|333969161|gb|AEG35966.1| 23S rRNA pseudouridylate synthase C [Escherichia coli NA114]
gi|345339171|gb|EGW71597.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_C165-02]
gi|345378392|gb|EGX10323.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_MHI813]
gi|371612571|gb|EHO01080.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
B093]
gi|373246884|gb|EHP66333.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
4_1_47FAA]
gi|374358209|gb|AEZ39916.1| 23S rRNA pseudouridylate synthase C [Escherichia coli O55:H7 str.
RM12579]
gi|377898707|gb|EHU63066.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3A]
gi|377899515|gb|EHU63862.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3B]
gi|377910788|gb|EHU74974.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3C]
gi|377915860|gb|EHU79964.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3D]
gi|377917662|gb|EHU81720.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC3E]
gi|377931912|gb|EHU95770.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4A]
gi|377936791|gb|EHV00584.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4B]
gi|377948147|gb|EHV11799.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4D]
gi|377948440|gb|EHV12091.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4C]
gi|377952552|gb|EHV16136.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4E]
gi|377963738|gb|EHV27180.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC4F]
gi|377964747|gb|EHV28182.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5A]
gi|377971332|gb|EHV34689.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5B]
gi|377978164|gb|EHV41444.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5C]
gi|377979504|gb|EHV42781.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC5D]
gi|377986880|gb|EHV50070.1| pseudouridine synthase, RluA family protein [Escherichia coli
DEC5E]
gi|386795426|gb|AFJ28460.1| 23S rRNA pseudouridylate synthase C [Escherichia coli Xuzhou21]
gi|388402583|gb|EIL63154.1| 23S rRNA pseudouridylate synthase C [Escherichia coli 576-1]
gi|390649015|gb|EIN27641.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1996]
gi|390649416|gb|EIN27936.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA517]
gi|390650003|gb|EIN28471.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA505]
gi|390667767|gb|EIN44723.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
93-001]
gi|390669924|gb|EIN46516.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1990]
gi|390670194|gb|EIN46778.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1985]
gi|390686395|gb|EIN61753.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA3]
gi|390689163|gb|EIN64142.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA5]
gi|390689312|gb|EIN64280.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA9]
gi|390706151|gb|EIN79760.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA10]
gi|390707007|gb|EIN80471.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA15]
gi|390707644|gb|EIN80985.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA14]
gi|390718519|gb|EIN91273.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA22]
gi|390730841|gb|EIO02786.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA24]
gi|390731157|gb|EIO03077.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA25]
gi|390733504|gb|EIO05081.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA28]
gi|390749022|gb|EIO19336.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA31]
gi|390749708|gb|EIO19902.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA32]
gi|390751596|gb|EIO21485.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA33]
gi|390760762|gb|EIO30075.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA40]
gi|390773925|gb|EIO42243.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA41]
gi|390775034|gb|EIO43122.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA42]
gi|390776104|gb|EIO44072.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA39]
gi|390784409|gb|EIO51978.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW06591]
gi|390793358|gb|EIO60698.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW10246]
gi|390800259|gb|EIO67362.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW11039]
gi|390803595|gb|EIO70595.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW07945]
gi|390810540|gb|EIO77297.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09109]
gi|390818002|gb|EIO84403.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW10119]
gi|390818016|gb|EIO84416.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09098]
gi|390834852|gb|EIO99682.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4203]
gi|390836540|gb|EIP01058.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW09195]
gi|390838084|gb|EIP02400.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4196]
gi|390853475|gb|EIP16469.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW14301]
gi|390855163|gb|EIP17904.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TW14313]
gi|390856126|gb|EIP18759.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4421]
gi|390868812|gb|EIP30521.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4422]
gi|390872848|gb|EIP34127.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4013]
gi|390881789|gb|EIP42345.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4402]
gi|390884931|gb|EIP45189.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4439]
gi|390889076|gb|EIP48838.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4436]
gi|390902553|gb|EIP61642.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1738]
gi|390904847|gb|EIP63819.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4437]
gi|390909291|gb|EIP68086.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC4448]
gi|390911026|gb|EIP69750.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1734]
gi|390923384|gb|EIP81310.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1863]
gi|390924575|gb|EIP82331.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1845]
gi|408070352|gb|EKH04717.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA7]
gi|408074329|gb|EKH08613.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK920]
gi|408083677|gb|EKH17496.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA34]
gi|408086861|gb|EKH20363.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA506]
gi|408091542|gb|EKH24765.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA507]
gi|408099497|gb|EKH32142.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FDA504]
gi|408106653|gb|EKH38747.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1999]
gi|408113215|gb|EKH44819.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK1997]
gi|408118188|gb|EKH49349.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE1487]
gi|408126848|gb|EKH57385.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE037]
gi|408128818|gb|EKH59082.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK2001]
gi|408136871|gb|EKH66599.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA4]
gi|408147966|gb|EKH76874.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA23]
gi|408148851|gb|EKH77607.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA49]
gi|408154233|gb|EKH82598.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA45]
gi|408164227|gb|EKH92040.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
TT12B]
gi|408168807|gb|EKH96168.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
MA6]
gi|408169631|gb|EKH96890.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
5905]
gi|408184527|gb|EKI10845.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
CB7326]
gi|408188499|gb|EKI14297.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
5412]
gi|408188681|gb|EKI14474.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC96038]
gi|408228404|gb|EKI51941.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
PA38]
gi|408230749|gb|EKI54108.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
N1]
gi|408234971|gb|EKI57960.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1735]
gi|408246674|gb|EKI68932.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1736]
gi|408250000|gb|EKI71907.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1737]
gi|408254968|gb|EKI76432.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1846]
gi|408265408|gb|EKI86115.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1847]
gi|408266946|gb|EKI87430.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1848]
gi|408275320|gb|EKI95283.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1849]
gi|408282263|gb|EKJ01592.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1850]
gi|408284272|gb|EKJ03395.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1856]
gi|408297527|gb|EKJ15610.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1862]
gi|408298126|gb|EKJ16095.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1864]
gi|408314024|gb|EKJ30507.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1868]
gi|408314142|gb|EKJ30623.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1866]
gi|408329257|gb|EKJ44747.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1869]
gi|408332877|gb|EKJ47890.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
NE098]
gi|408333828|gb|EKJ48748.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
EC1870]
gi|408348328|gb|EKJ62426.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
FRIK523]
gi|408352104|gb|EKJ65728.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
0.1304]
gi|408555828|gb|EKK32565.1| pseudouridine synthase, RluA family protein [Escherichia coli
5.2239]
gi|408556488|gb|EKK33081.1| pseudouridine synthase, RluA family protein [Escherichia coli
3.4870]
gi|408556699|gb|EKK33279.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
6.0172]
gi|408582601|gb|EKK57815.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.0586]
gi|408586604|gb|EKK61349.1| pseudouridine synthase, RluA family protein [Escherichia coli
8.2524]
gi|408587134|gb|EKK61810.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
10.0833]
gi|408601514|gb|EKK75316.1| pseudouridine synthase, RluA family protein [Escherichia coli
10.0869]
gi|408604249|gb|EKK77833.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
8.0416]
gi|408604370|gb|EKK77949.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.0221]
gi|408615527|gb|EKK88719.1| pseudouridine synthase, RluA family protein [Escherichia coli
10.0821]
gi|427212271|gb|EKV81894.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.1042]
gi|427213271|gb|EKV82699.1| pseudouridine synthase, RluA family protein [Escherichia coli
88.1467]
gi|427213532|gb|EKV82939.1| pseudouridine synthase, RluA family protein [Escherichia coli
89.0511]
gi|427231244|gb|EKV99300.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.2281]
gi|427231918|gb|EKV99846.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.0039]
gi|427232247|gb|EKW00145.1| pseudouridine synthase, RluA family protein [Escherichia coli
90.0091]
gi|427248915|gb|EKW15803.1| pseudouridine synthase, RluA family protein [Escherichia coli
93.0056]
gi|427249877|gb|EKW16625.1| pseudouridine synthase, RluA family protein [Escherichia coli
93.0055]
gi|427250661|gb|EKW17317.1| pseudouridine synthase, RluA family protein [Escherichia coli
94.0618]
gi|427267666|gb|EKW32896.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0943]
gi|427268285|gb|EKW33440.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0183]
gi|427270785|gb|EKW35652.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.1288]
gi|427284084|gb|EKW48210.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0428]
gi|427288301|gb|EKW51943.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0427]
gi|427290117|gb|EKW53613.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0939]
gi|427302569|gb|EKW65356.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0932]
gi|427303554|gb|EKW66267.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0003]
gi|427307103|gb|EKW69588.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0107]
gi|427319116|gb|EKW80944.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.1742]
gi|427320214|gb|EKW81990.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0007]
gi|427332199|gb|EKW93362.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0713]
gi|427332309|gb|EKW93469.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
99.0678]
gi|427332972|gb|EKW94091.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0672]
gi|429258319|gb|EKY42208.1| pseudouridine synthase, RluA family protein [Escherichia coli
96.0109]
gi|429259655|gb|EKY43308.1| pseudouridine synthase, RluA family protein [Escherichia coli
97.0010]
gi|430877504|gb|ELC00955.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE2]
gi|430917260|gb|ELC38308.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE25]
gi|430927859|gb|ELC48422.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE26]
gi|430946794|gb|ELC66717.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE178]
gi|430958551|gb|ELC77145.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE181]
gi|430990747|gb|ELD07168.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE204]
gi|431008213|gb|ELD23020.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE208]
gi|431022984|gb|ELD36244.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE213]
gi|431031331|gb|ELD44229.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE216]
gi|431043902|gb|ELD54183.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE228]
gi|431072704|gb|ELD80455.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE235]
gi|431076710|gb|ELD84205.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE236]
gi|431083862|gb|ELD90034.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE237]
gi|431093648|gb|ELD99313.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE49]
gi|431142545|gb|ELE44293.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE66]
gi|431161676|gb|ELE62147.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE76]
gi|431173721|gb|ELE73797.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE80]
gi|431184147|gb|ELE83913.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE83]
gi|431202994|gb|ELF01671.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE116]
gi|431235735|gb|ELF30982.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE162]
gi|431250553|gb|ELF44612.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE6]
gi|431265222|gb|ELF56919.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE9]
gi|431267644|gb|ELF59161.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE17]
gi|431274943|gb|ELF65988.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE18]
gi|431285432|gb|ELF76268.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE23]
gi|431319607|gb|ELG07277.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE54]
gi|431366944|gb|ELG53441.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE115]
gi|431391269|gb|ELG74917.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE140]
gi|431401536|gb|ELG84880.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE144]
gi|431404229|gb|ELG87487.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE147]
gi|431418600|gb|ELH00995.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE158]
gi|431443337|gb|ELH24414.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE190]
gi|431446460|gb|ELH27209.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE173]
gi|431448290|gb|ELH29008.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE175]
gi|431461754|gb|ELH42021.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE196]
gi|431493424|gb|ELH73018.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE211]
gi|431497029|gb|ELH76607.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE217]
gi|431535356|gb|ELI11736.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE105]
gi|431558984|gb|ELI32562.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE117]
gi|431574529|gb|ELI47309.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE122]
gi|431588996|gb|ELI60217.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE128]
gi|431618613|gb|ELI87581.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE139]
gi|431630112|gb|ELI98453.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE150]
gi|431632883|gb|ELJ01169.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE148]
gi|431680616|gb|ELJ46439.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE177]
gi|431708524|gb|ELJ73033.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE82]
gi|431724717|gb|ELJ88633.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE95]
gi|444541184|gb|ELV20731.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0814]
gi|444547286|gb|ELV25912.1| pseudouridine synthase, RluA family protein [Escherichia coli
09BKT078844]
gi|444550333|gb|ELV28434.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0815]
gi|444562708|gb|ELV39751.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0839]
gi|444564559|gb|ELV41488.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0816]
gi|444568698|gb|ELV45353.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0848]
gi|444579145|gb|ELV55160.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1753]
gi|444582635|gb|ELV58418.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1775]
gi|444584315|gb|ELV59964.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1793]
gi|444597670|gb|ELV72637.1| pseudouridine synthase, RluA family protein [Escherichia coli PA11]
gi|444598827|gb|ELV73740.1| pseudouridine synthase, RluA family protein [Escherichia coli ATCC
700728]
gi|444603349|gb|ELV78058.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1805]
gi|444611825|gb|ELV86146.1| pseudouridine synthase, RluA family protein [Escherichia coli PA19]
gi|444612097|gb|ELV86404.1| pseudouridine synthase, RluA family protein [Escherichia coli PA13]
gi|444619843|gb|ELV93868.1| pseudouridine synthase, RluA family protein [Escherichia coli PA2]
gi|444629823|gb|ELW03495.1| pseudouridine synthase, RluA family protein [Escherichia coli PA47]
gi|444630011|gb|ELW03678.1| pseudouridine synthase, RluA family protein [Escherichia coli PA48]
gi|444634821|gb|ELW08272.1| pseudouridine synthase, RluA family protein [Escherichia coli PA8]
gi|444645255|gb|ELW18328.1| pseudouridine synthase, RluA family protein [Escherichia coli
7.1982]
gi|444647599|gb|ELW20563.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1781]
gi|444650733|gb|ELW23558.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.1762]
gi|444660343|gb|ELW32715.1| pseudouridine synthase, RluA family protein [Escherichia coli PA35]
gi|444665026|gb|ELW37178.1| pseudouridine synthase, RluA family protein [Escherichia coli
3.4880]
gi|444670672|gb|ELW42540.1| pseudouridine synthase, RluA family protein [Escherichia coli
95.0083]
gi|444673187|gb|ELW44842.1| pseudouridine synthase, RluA family protein [Escherichia coli
99.0670]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|419699932|ref|ZP_14227544.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SCI-07]
gi|419915194|ref|ZP_14433562.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KD1]
gi|432465023|ref|ZP_19707127.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE205]
gi|432583117|ref|ZP_19819526.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE57]
gi|433072110|ref|ZP_20258801.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE129]
gi|433119627|ref|ZP_20305329.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE157]
gi|433182597|ref|ZP_20366889.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE85]
gi|380349038|gb|EIA37314.1| 23S rRNA pseudouridylate synthase C [Escherichia coli SCI-07]
gi|388384382|gb|EIL46115.1| 23S rRNA pseudouridylate synthase C [Escherichia coli KD1]
gi|430996026|gb|ELD12313.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE205]
gi|431119216|gb|ELE22230.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE57]
gi|431591479|gb|ELI62395.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE129]
gi|431647042|gb|ELJ14529.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE157]
gi|431710665|gb|ELJ75038.1| ribosomal large subunit pseudouridine synthase C [Escherichia coli
KTE85]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|419254047|ref|ZP_13796579.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10A]
gi|378104197|gb|EHW65858.1| 23S rRNA pseudouridine synthase [Escherichia coli DEC10A]
Length = 236
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALV 180
>gi|365962482|ref|YP_004944048.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365739163|gb|AEW83365.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes TypeIA2 P.acn31]
Length = 306
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|282854248|ref|ZP_06263585.1| pseudouridine synthase, RluA family [Propionibacterium acnes J139]
gi|386071688|ref|YP_005986584.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes ATCC 11828]
gi|422390908|ref|ZP_16471003.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL103PA1]
gi|422464637|ref|ZP_16541244.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL060PA1]
gi|422466314|ref|ZP_16542890.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA4]
gi|422470240|ref|ZP_16546761.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA3]
gi|422565001|ref|ZP_16640652.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL082PA2]
gi|422576192|ref|ZP_16651730.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL001PA1]
gi|282583701|gb|EFB89081.1| pseudouridine synthase, RluA family [Propionibacterium acnes J139]
gi|314923234|gb|EFS87065.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL001PA1]
gi|314967001|gb|EFT11100.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL082PA2]
gi|314980957|gb|EFT25051.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA3]
gi|315091688|gb|EFT63664.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA4]
gi|315093078|gb|EFT65054.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL060PA1]
gi|327327821|gb|EGE69597.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL103PA1]
gi|353456054|gb|AER06573.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes ATCC 11828]
Length = 306
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|268683027|ref|ZP_06149889.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID332]
gi|268623311|gb|EEZ55711.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae PID332]
Length = 330
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 96 VVYEDDALLVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|16764542|ref|NP_460157.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|168237272|ref|ZP_02662330.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244787|ref|ZP_02669719.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168822633|ref|ZP_02834633.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444187|ref|YP_002040440.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448791|ref|YP_002045185.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194738103|ref|YP_002114185.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197263790|ref|ZP_03163864.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198244450|ref|YP_002215951.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|204930731|ref|ZP_03221604.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|207857306|ref|YP_002243957.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|238910994|ref|ZP_04654831.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|374980184|ref|ZP_09721514.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|375119432|ref|ZP_09764599.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|378444619|ref|YP_005232251.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|378699079|ref|YP_005181036.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|378954726|ref|YP_005212213.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Gallinarum/pullorum
str. RKS5078]
gi|378983746|ref|YP_005246901.1| 23S rRNA pseudouridine synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378988530|ref|YP_005251694.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379700357|ref|YP_005242085.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495909|ref|YP_005396598.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str. 798]
gi|386591049|ref|YP_006087449.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|410023169|ref|YP_005236942.2| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|418789787|ref|ZP_13345573.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795640|ref|ZP_13351341.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418798378|ref|ZP_13354055.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418808726|ref|ZP_13364279.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418812882|ref|ZP_13368403.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418817035|ref|ZP_13372523.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418820477|ref|ZP_13375910.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418832905|ref|ZP_13387839.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418836278|ref|ZP_13391165.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418839612|ref|ZP_13394446.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418848166|ref|ZP_13402905.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855567|ref|ZP_13410223.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|419729356|ref|ZP_14256314.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419736344|ref|ZP_14263195.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419737696|ref|ZP_14264468.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419744120|ref|ZP_14270779.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750730|ref|ZP_14277176.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421358321|ref|ZP_15808619.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421364414|ref|ZP_15814646.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421366797|ref|ZP_15816999.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421373382|ref|ZP_15823522.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421377234|ref|ZP_15827333.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421381732|ref|ZP_15831787.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421385413|ref|ZP_15835435.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421390259|ref|ZP_15840234.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421393519|ref|ZP_15843463.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398434|ref|ZP_15848342.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421404245|ref|ZP_15854089.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421409758|ref|ZP_15859548.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421413481|ref|ZP_15863235.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421418792|ref|ZP_15868493.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421422469|ref|ZP_15872137.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421426294|ref|ZP_15875922.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421432955|ref|ZP_15882523.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421434961|ref|ZP_15884507.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421442148|ref|ZP_15891608.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421444439|ref|ZP_15893869.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421448254|ref|ZP_15897649.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421569473|ref|ZP_16015176.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421573577|ref|ZP_16019212.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421578678|ref|ZP_16024252.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421582524|ref|ZP_16028060.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422025331|ref|ZP_16371767.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422030335|ref|ZP_16376541.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427548754|ref|ZP_18927078.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427564501|ref|ZP_18931779.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427584276|ref|ZP_18936578.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427606645|ref|ZP_18941393.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427631848|ref|ZP_18946340.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427654965|ref|ZP_18951097.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427660511|ref|ZP_18956004.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427666139|ref|ZP_18960775.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|436628695|ref|ZP_20515292.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436763579|ref|ZP_20520597.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436803910|ref|ZP_20526029.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436809220|ref|ZP_20528600.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436815025|ref|ZP_20532576.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436844448|ref|ZP_20538206.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436854221|ref|ZP_20543855.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436857382|ref|ZP_20545902.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436864554|ref|ZP_20550521.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436873882|ref|ZP_20556606.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436877920|ref|ZP_20558775.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436888539|ref|ZP_20564868.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436895678|ref|ZP_20568434.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436901560|ref|ZP_20572470.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436912401|ref|ZP_20578230.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436922333|ref|ZP_20584558.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436926929|ref|ZP_20586755.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436936352|ref|ZP_20591792.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436943542|ref|ZP_20596488.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436950971|ref|ZP_20600026.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436961705|ref|ZP_20605079.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436970702|ref|ZP_20609095.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436982137|ref|ZP_20613633.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436994775|ref|ZP_20619043.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437001730|ref|ZP_20621009.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437020079|ref|ZP_20627230.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437033862|ref|ZP_20632746.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437045561|ref|ZP_20637859.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437053774|ref|ZP_20642573.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437058872|ref|ZP_20645719.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437070305|ref|ZP_20651483.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437076561|ref|ZP_20654924.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437081076|ref|ZP_20657528.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437091761|ref|ZP_20663361.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437099251|ref|ZP_20665721.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437122818|ref|ZP_20672622.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437131166|ref|ZP_20677296.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437138917|ref|ZP_20681399.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437145773|ref|ZP_20685680.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437156722|ref|ZP_20692258.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437159189|ref|ZP_20693703.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437166146|ref|ZP_20697931.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437178787|ref|ZP_20704905.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437187119|ref|ZP_20709916.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437250300|ref|ZP_20715207.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|437258663|ref|ZP_20716583.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437268233|ref|ZP_20721703.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437281650|ref|ZP_20728736.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437286236|ref|ZP_20730016.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437312150|ref|ZP_20736258.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437321854|ref|ZP_20738785.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437337770|ref|ZP_20743407.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437372254|ref|ZP_20749409.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437443930|ref|ZP_20758096.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437460527|ref|ZP_20761481.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437481330|ref|ZP_20768862.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437497188|ref|ZP_20773373.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437516171|ref|ZP_20778063.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437535492|ref|ZP_20781536.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437551333|ref|ZP_20783775.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437575674|ref|ZP_20790367.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592165|ref|ZP_20795067.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437601712|ref|ZP_20797944.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437623629|ref|ZP_20805000.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437658159|ref|ZP_20811490.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437684412|ref|ZP_20818921.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437688509|ref|ZP_20819817.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437715192|ref|ZP_20827881.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437798858|ref|ZP_20837823.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437811878|ref|ZP_20841375.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437921061|ref|ZP_20850747.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|437995139|ref|ZP_20853931.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438087149|ref|ZP_20859296.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438099752|ref|ZP_20863496.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438110711|ref|ZP_20868109.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438122087|ref|ZP_20872233.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|445142439|ref|ZP_21386125.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445152055|ref|ZP_21390679.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445168438|ref|ZP_21394832.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445185081|ref|ZP_21398898.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445229532|ref|ZP_21405099.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445308624|ref|ZP_21411693.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445332962|ref|ZP_21414609.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445353379|ref|ZP_21421120.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445363778|ref|ZP_21424701.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|452120652|ref|YP_007470900.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|34395808|sp|Q8ZQ16.1|RLUC_SALTY RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|16419703|gb|AAL20116.1| 23S rRNA pseudouridylate synthase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194402850|gb|ACF63072.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194407095|gb|ACF67314.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194713605|gb|ACF92826.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197242045|gb|EDY24665.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197289855|gb|EDY29216.1| ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197938966|gb|ACH76299.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|204320190|gb|EDZ05394.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205336408|gb|EDZ23172.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205340990|gb|EDZ27754.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206709109|emb|CAR33442.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|261246398|emb|CBG24207.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|301157727|emb|CBW17219.1| ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
[Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312912174|dbj|BAJ36148.1| 23S rRNA pseudouridine synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321223804|gb|EFX48867.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323129456|gb|ADX16886.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|326623699|gb|EGE30044.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|332988077|gb|AEF07060.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|357205337|gb|AET53383.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Gallinarum/pullorum
str. RKS5078]
gi|380462730|gb|AFD58133.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Typhimurium str. 798]
gi|381292483|gb|EIC33686.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381296930|gb|EIC38029.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381304218|gb|EIC45225.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381305730|gb|EIC46639.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381310379|gb|EIC51210.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383798093|gb|AFH45175.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392758168|gb|EJA15043.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392760132|gb|EJA16972.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392767035|gb|EJA23807.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392774108|gb|EJA30803.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392775409|gb|EJA32101.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392789203|gb|EJA45723.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392792746|gb|EJA49200.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392796975|gb|EJA53303.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392802104|gb|EJA58324.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392812489|gb|EJA68478.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392821625|gb|EJA77449.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392823478|gb|EJA79274.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|395983903|gb|EJH93093.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395988625|gb|EJH97781.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395989452|gb|EJH98586.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395996501|gb|EJI05546.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396000856|gb|EJI09870.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396001695|gb|EJI10707.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396014069|gb|EJI22955.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396016850|gb|EJI25717.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396017402|gb|EJI26267.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396025055|gb|EJI33839.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396027325|gb|EJI36089.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396031507|gb|EJI40234.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396038070|gb|EJI46714.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396040569|gb|EJI49193.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396041784|gb|EJI50407.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396049171|gb|EJI57714.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396053801|gb|EJI62294.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396059342|gb|EJI67797.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396062825|gb|EJI71236.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396066870|gb|EJI75230.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396073854|gb|EJI82154.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|402524191|gb|EJW31496.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402527315|gb|EJW34578.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402527423|gb|EJW34685.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402532991|gb|EJW40176.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414020926|gb|EKT04494.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414021001|gb|EKT04567.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414022510|gb|EKT05991.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414034907|gb|EKT17815.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414036246|gb|EKT19084.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414039682|gb|EKT22346.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414049171|gb|EKT31391.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414050804|gb|EKT32964.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414055241|gb|EKT37156.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414060678|gb|EKT42179.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|434943145|gb|ELL49311.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434956121|gb|ELL49892.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434961499|gb|ELL54782.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434964878|gb|ELL57848.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434967037|gb|ELL59872.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434973141|gb|ELL65529.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434979034|gb|ELL71026.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434983024|gb|ELL74832.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434989534|gb|ELL81084.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434995589|gb|ELL86905.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434998639|gb|ELL89860.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435007857|gb|ELL98684.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435010249|gb|ELM01035.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435015567|gb|ELM06093.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435020994|gb|ELM11383.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435024651|gb|ELM14857.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435026646|gb|ELM16777.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435036770|gb|ELM26589.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435039190|gb|ELM28971.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435043741|gb|ELM33458.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435050844|gb|ELM40348.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435051438|gb|ELM40940.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435056991|gb|ELM46360.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435064006|gb|ELM53153.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435066391|gb|ELM55479.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435074601|gb|ELM63425.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076752|gb|ELM65534.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435079716|gb|ELM68411.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435079849|gb|ELM68543.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435088788|gb|ELM77243.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435090276|gb|ELM78678.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435094685|gb|ELM83024.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435105858|gb|ELM93895.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435111695|gb|ELM99583.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435112667|gb|ELN00532.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435122874|gb|ELN10380.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435125140|gb|ELN12596.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435125829|gb|ELN13257.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435132439|gb|ELN19637.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435135329|gb|ELN22438.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435137234|gb|ELN24305.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435150122|gb|ELN36806.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435152204|gb|ELN38834.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435153503|gb|ELN40111.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435157566|gb|ELN44011.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435164596|gb|ELN50671.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435165910|gb|ELN51912.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435168888|gb|ELN54699.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435174412|gb|ELN59854.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435183282|gb|ELN68257.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435184763|gb|ELN69684.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435196176|gb|ELN80521.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435196732|gb|ELN81058.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435206172|gb|ELN89718.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435210630|gb|ELN93868.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435217745|gb|ELO00160.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435220819|gb|ELO03093.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435225527|gb|ELO07218.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435229012|gb|ELO10407.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435240451|gb|ELO20846.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435244723|gb|ELO24898.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435246155|gb|ELO26174.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435253522|gb|ELO32996.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435255040|gb|ELO34418.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435260724|gb|ELO39914.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435267949|gb|ELO46582.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435270854|gb|ELO49339.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435282623|gb|ELO60237.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435285101|gb|ELO62504.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435288280|gb|ELO65323.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435297709|gb|ELO73976.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435313625|gb|ELO87243.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 6.0562-1]
gi|435318357|gb|ELO91298.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435325350|gb|ELO97215.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435331918|gb|ELP03016.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|435336383|gb|ELP06332.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|444849864|gb|ELX74973.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444854837|gb|ELX79894.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444864508|gb|ELX89305.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444865354|gb|ELX90127.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444870192|gb|ELX94719.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444872919|gb|ELX97227.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444875229|gb|ELX99441.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444876386|gb|ELY00561.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444883489|gb|ELY07368.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|451909656|gb|AGF81462.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 319
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|422459770|ref|ZP_16536418.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA2]
gi|315103148|gb|EFT75124.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA2]
Length = 306
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|345430362|ref|YP_004823483.1| hypothetical protein PARA_17970 [Haemophilus parainfluenzae T3T1]
gi|301156426|emb|CBW15897.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 229
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II T+ +++ KP G SV I T +R L + + H++D T G ++L
Sbjct: 9 IIYQTDDFIIIYKPCGISVHKDQSKI--GLTTLLARQLNVPQ-VWLVHRLDKVTSGLLIL 65
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTT 307
A E + F R E ++K YLAL+
Sbjct: 66 ALNAESAAEFFRLFSEHHIQKTYLALSN 93
>gi|227821788|ref|YP_002825758.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
gi|227340787|gb|ACP25005.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
Length = 330
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 213 DIDWNSRIIAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D D SR++ ++ V VL+KPAG +V G + +I++ + S+ R H+
Sbjct: 89 DGDLLSRMVLHEDAKVIVLNKPAGLAVQGGSGVSRHIDKMLEAWTSQK---GEKPRLVHR 145
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+D T G +V+ART+ RE+ +K+Y +L
Sbjct: 146 LDRDTSGVLVIARTRGAAQQLTAAFRERDTRKIYWSLVKG 185
>gi|218549187|ref|YP_002382978.1| 23S rRNA pseudouridylate synthase C [Escherichia fergusonii ATCC
35469]
gi|422805267|ref|ZP_16853699.1| RluA family protein pseudouridine synthase [Escherichia fergusonii
B253]
gi|218356728|emb|CAQ89356.1| 23S rRNA pseudouridylate synthase [Escherichia fergusonii ATCC
35469]
gi|324113880|gb|EGC07854.1| RluA family protein pseudouridine synthase [Escherichia fergusonii
B253]
Length = 331
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 108 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 163
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 164 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|417364949|ref|ZP_12137739.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417389441|ref|ZP_12153238.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353595790|gb|EHC52955.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353621868|gb|EHC71576.1| Ribosomal large subunit pseudouridine synthase C, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
Length = 285
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|416467649|ref|ZP_11717561.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322641590|gb|EFY38228.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
Length = 274
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|226943601|ref|YP_002798674.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
gi|226718528|gb|ACO77699.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
Length = 278
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 220 IIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ +S +VL+KPAG +V G + + E+ A L H++D T G
Sbjct: 58 IVHEDKSLIVLNKPAGIAVHGGSGLSHGVIEALRQLRPEA----RDLELVHRLDRDTSGL 113
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+++A+ + H +R V K YLAL P
Sbjct: 114 LMIAKKRSMLRHLHEALRGDGVDKRYLALVRGAWP 148
>gi|170768204|ref|ZP_02902657.1| ribosomal large subunit pseudouridine synthase C [Escherichia
albertii TW07627]
gi|170122970|gb|EDS91901.1| ribosomal large subunit pseudouridine synthase C [Escherichia
albertii TW07627]
Length = 319
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|168264021|ref|ZP_02685994.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|205347383|gb|EDZ34014.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 319
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|163939199|ref|YP_001644083.1| RluA family pseudouridine synthase [Bacillus weihenstephanensis
KBAB4]
gi|163861396|gb|ABY42455.1| pseudouridine synthase, RluA family [Bacillus weihenstephanensis
KBAB4]
Length = 307
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|429213049|ref|ZP_19204214.1| putative pseudouridylate synthase [Pseudomonas sp. M1]
gi|428157531|gb|EKX04079.1| putative pseudouridylate synthase [Pseudomonas sp. M1]
Length = 299
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG--LTTPLRTTHQIDN 271
I + RI+ V E VV DKP V + +E++ +R L L PL H+ID
Sbjct: 83 IPFEERILHVDEHLVVADKPHFLPVTPSGQYVEQTLLARLARRLDNPLLVPL---HRIDR 139
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMR 320
T G V+ + + + RE+++ K Y A+ PLP H R
Sbjct: 140 PTAGLVLFSANPASRAAYQALFRERRMHKRYEAIAP-PLPQLDFPHVRR 187
>gi|71280214|ref|YP_269010.1| ribosomal large subunit pseudouridine synthase C [Colwellia
psychrerythraea 34H]
gi|71145954|gb|AAZ26427.1| ribosomal large subunit pseudouridine synthase C [Colwellia
psychrerythraea 34H]
Length = 360
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ + +V++KP+G +V G S +F AL P L H++
Sbjct: 133 NLEKQILFEDDRLIVINKPSGMAVHGG------SGLSFGLIEALRALRPEARMLELVHRL 186
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGI 314
D T GC+++A+ + H + R+K V+K Y AL P +
Sbjct: 187 DRDTSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKGHWPTKL 231
>gi|395232068|ref|ZP_10410320.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. Ag1]
gi|394733572|gb|EJF33189.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. Ag1]
Length = 317
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 23/129 (17%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++R+K ++K YLAL APL I+ R +
Sbjct: 150 VLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIV-- 207
Query: 325 APRLVSEGK 333
R+ SEGK
Sbjct: 208 --RVNSEGK 214
>gi|420373715|ref|ZP_14873778.1| pseudouridine synthase, RluA family protein [Shigella flexneri
1235-66]
gi|391316738|gb|EIQ74123.1| pseudouridine synthase, RluA family protein [Shigella flexneri
1235-66]
Length = 317
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|261378098|ref|ZP_05982671.1| ribosomal large subunit pseudouridine synthase C [Neisseria cinerea
ATCC 14685]
gi|269145550|gb|EEZ71968.1| ribosomal large subunit pseudouridine synthase C [Neisseria cinerea
ATCC 14685]
Length = 330
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|222148667|ref|YP_002549624.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
gi|221735653|gb|ACM36616.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
Length = 330
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ E VL+KPAG +V G + +I++ + S+ R H++D T G
Sbjct: 97 LLHEDEKVFVLNKPAGLAVQGGSGLNRHIDQMLEAWTSKK---GEKPRLVHRLDRDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+V+ART+ RE+ KK Y AL
Sbjct: 154 LVVARTRGAAQKLTAAFRERDTKKTYWALVKG 185
>gi|197249745|ref|YP_002146857.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|440761798|ref|ZP_20940866.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
gi|440767532|ref|ZP_20946508.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440773981|ref|ZP_20952869.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|197213448|gb|ACH50845.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|436413499|gb|ELP11432.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|436419441|gb|ELP17316.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436424408|gb|ELP22182.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Agona str. SH11G1113]
Length = 319
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|118587136|ref|ZP_01544565.1| pseudouridine synthase [Oenococcus oeni ATCC BAA-1163]
gi|118432415|gb|EAV39152.1| pseudouridine synthase [Oenococcus oeni ATCC BAA-1163]
Length = 302
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRT--THQ 268
D RI++ E ++++DKPAG + + N ++ + L + P H+
Sbjct: 81 DRRLRILSEKEDYLLVDKPAGMKMHPHSPNETDTLLNYVEAQLKGHLSRSCPAHAFMVHR 140
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
ID T G V++A+ I + + +K++K+ YLA + L
Sbjct: 141 IDRDTSGVVIIAKNPLAVGILDQLLAKKRIKRTYLAWVSGNL 182
>gi|15965142|ref|NP_385495.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti 1021]
gi|334315929|ref|YP_004548548.1| RluA family pseudouridine synthase [Sinorhizobium meliloti AK83]
gi|384529100|ref|YP_005713188.1| RluA family pseudouridine synthase [Sinorhizobium meliloti BL225C]
gi|384536620|ref|YP_005720705.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|407720329|ref|YP_006839991.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|418405277|ref|ZP_12978685.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|433613160|ref|YP_007189958.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
gi|15074322|emb|CAC45968.1| Probable ribosomal large subunit pseudouridine synthase C
[Sinorhizobium meliloti 1021]
gi|333811276|gb|AEG03945.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti BL225C]
gi|334094923|gb|AEG52934.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti AK83]
gi|336033512|gb|AEH79444.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|359500766|gb|EHK73420.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|407318561|emb|CCM67165.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|429551350|gb|AGA06359.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
Length = 330
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 228 VVLDKPAGTSV-GGTTDN--IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V GG+ N I++ + S+ R H++D T G +V+ART+
Sbjct: 105 IVLNKPAGLAVQGGSGVNRHIDKMLEAWTSQK---GEKPRLVHRLDRDTSGVLVVARTRG 161
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
RE+ KK Y AL
Sbjct: 162 AAQQLTAAFRERDTKKTYWAL 182
>gi|416422130|ref|ZP_11690034.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416429993|ref|ZP_11694821.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416441372|ref|ZP_11701584.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416443662|ref|ZP_11703138.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416452730|ref|ZP_11709225.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459078|ref|ZP_11713587.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416476460|ref|ZP_11721098.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416489827|ref|ZP_11726434.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416500183|ref|ZP_11731254.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416505525|ref|ZP_11733959.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416527592|ref|ZP_11743367.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416535530|ref|ZP_11747784.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416545541|ref|ZP_11753335.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416551120|ref|ZP_11756375.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416558215|ref|ZP_11760091.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416566192|ref|ZP_11763746.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416578232|ref|ZP_11770352.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416582168|ref|ZP_11772442.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416589138|ref|ZP_11776838.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416599208|ref|ZP_11783442.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416604707|ref|ZP_11786328.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416612243|ref|ZP_11791385.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416618930|ref|ZP_11794780.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416630830|ref|ZP_11800989.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416637339|ref|ZP_11803394.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416650355|ref|ZP_11810463.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416655613|ref|ZP_11812622.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416666045|ref|ZP_11817196.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416676565|ref|ZP_11821853.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416697315|ref|ZP_11828154.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416707291|ref|ZP_11832389.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416714589|ref|ZP_11837907.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416716367|ref|ZP_11838714.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416725270|ref|ZP_11845640.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416731865|ref|ZP_11849567.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416738638|ref|ZP_11853396.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416743822|ref|ZP_11856355.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416761834|ref|ZP_11865884.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416770696|ref|ZP_11872035.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|417358713|ref|ZP_12133549.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417382237|ref|ZP_12148257.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|417464253|ref|ZP_12164795.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|417475765|ref|ZP_12170493.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|417531765|ref|ZP_12186390.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|418482316|ref|ZP_13051335.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490649|ref|ZP_13057189.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418495373|ref|ZP_13061815.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418499004|ref|ZP_13065414.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418502109|ref|ZP_13068485.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418507608|ref|ZP_13073928.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418513750|ref|ZP_13079974.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418526963|ref|ZP_13092922.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|322616557|gb|EFY13466.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620502|gb|EFY17366.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622496|gb|EFY19341.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629647|gb|EFY26422.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632633|gb|EFY29379.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636872|gb|EFY33575.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322646483|gb|EFY42993.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650020|gb|EFY46438.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653945|gb|EFY50268.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658477|gb|EFY54739.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663335|gb|EFY59537.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670069|gb|EFY66209.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674867|gb|EFY70958.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676663|gb|EFY72730.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682585|gb|EFY78604.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686662|gb|EFY82641.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195776|gb|EFZ80952.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198332|gb|EFZ83436.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204846|gb|EFZ89840.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213429|gb|EFZ98225.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217853|gb|EGA02568.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222141|gb|EGA06525.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224914|gb|EGA09172.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229655|gb|EGA13778.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232880|gb|EGA16976.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240615|gb|EGA24657.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242929|gb|EGA26950.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247713|gb|EGA31657.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252621|gb|EGA36459.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258851|gb|EGA42504.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323266949|gb|EGA50434.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269990|gb|EGA53439.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353590489|gb|EHC48994.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353615441|gb|EHC66972.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Johannesburg str.
S5-703]
gi|353630785|gb|EHC78236.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353643194|gb|EHC87444.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353664216|gb|EHD02684.1| Ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Urbana str. R8-2977]
gi|363555439|gb|EHL39665.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363556459|gb|EHL40674.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363565738|gb|EHL49762.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363567201|gb|EHL51202.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363577267|gb|EHL61092.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363579761|gb|EHL63537.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366059229|gb|EHN23503.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366064002|gb|EHN28212.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366065592|gb|EHN29780.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366072547|gb|EHN36637.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076556|gb|EHN40594.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366081129|gb|EHN45081.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366081154|gb|EHN45105.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366828538|gb|EHN55425.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372205214|gb|EHP18739.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 317
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|322514814|ref|ZP_08067833.1| pseudouridine synthase A [Actinobacillus ureae ATCC 25976]
gi|322119196|gb|EFX91337.1| pseudouridine synthase A [Actinobacillus ureae ATCC 25976]
Length = 226
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G +S T + G T P H++D T G ++ A ++
Sbjct: 28 LVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEP---AHRLDMATSGILLFALSKAAE 84
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y+AL L
Sbjct: 85 KELKRQFREREPKKHYIALLWGKL 108
>gi|422437812|ref|ZP_16514656.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL092PA1]
gi|422493038|ref|ZP_16569338.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL086PA1]
gi|422515984|ref|ZP_16592093.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA2]
gi|422524665|ref|ZP_16600674.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL053PA2]
gi|422532634|ref|ZP_16608580.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA1]
gi|422537632|ref|ZP_16613520.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL078PA1]
gi|422545694|ref|ZP_16621524.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL082PA1]
gi|313791774|gb|EFS39885.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA1]
gi|313802139|gb|EFS43371.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL110PA2]
gi|313838471|gb|EFS76185.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL086PA1]
gi|314963072|gb|EFT07172.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL082PA1]
gi|315077536|gb|EFT49594.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL053PA2]
gi|315080320|gb|EFT52296.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL078PA1]
gi|327452876|gb|EGE99530.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL092PA1]
Length = 306
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|296313302|ref|ZP_06863243.1| ribosomal large subunit pseudouridine synthase [Neisseria
polysaccharea ATCC 43768]
gi|296840180|gb|EFH24118.1| ribosomal large subunit pseudouridine synthase [Neisseria
polysaccharea ATCC 43768]
Length = 330
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|289426834|ref|ZP_06428560.1| pseudouridine synthase, RluA family [Propionibacterium acnes J165]
gi|295130343|ref|YP_003581006.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes SK137]
gi|354606742|ref|ZP_09024712.1| hypothetical protein HMPREF1003_01279 [Propionibacterium sp.
5_U_42AFAA]
gi|365973660|ref|YP_004955219.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes TypeIA2 P.acn33]
gi|386023729|ref|YP_005942032.1| pseudouridylate synthase [Propionibacterium acnes 266]
gi|407935181|ref|YP_006850823.1| pseudouridylate synthase [Propionibacterium acnes C1]
gi|417929223|ref|ZP_12572607.1| pseudouridine synthase, RluA family [Propionibacterium acnes SK182]
gi|419420978|ref|ZP_13961206.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes PRP-38]
gi|422385163|ref|ZP_16465298.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL096PA3]
gi|422388221|ref|ZP_16468324.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL096PA2]
gi|422393363|ref|ZP_16473416.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL099PA1]
gi|422396175|ref|ZP_16476206.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL097PA1]
gi|422424219|ref|ZP_16501169.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL043PA1]
gi|422431267|ref|ZP_16508146.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL072PA2]
gi|422448806|ref|ZP_16525531.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA3]
gi|422461619|ref|ZP_16538243.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL038PA1]
gi|422474488|ref|ZP_16550952.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL056PA1]
gi|422477812|ref|ZP_16554235.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL007PA1]
gi|422480368|ref|ZP_16556771.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL063PA1]
gi|422482861|ref|ZP_16559250.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA1]
gi|422485663|ref|ZP_16562025.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL043PA2]
gi|422488911|ref|ZP_16565240.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL013PA2]
gi|422491005|ref|ZP_16567320.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL020PA1]
gi|422498778|ref|ZP_16575050.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA3]
gi|422502591|ref|ZP_16578836.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL027PA2]
gi|422506538|ref|ZP_16582761.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA2]
gi|422507851|ref|ZP_16584032.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL046PA2]
gi|422513112|ref|ZP_16589235.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA2]
gi|422518344|ref|ZP_16594412.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL074PA1]
gi|422521607|ref|ZP_16597637.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL045PA1]
gi|422527000|ref|ZP_16602990.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL083PA1]
gi|422529441|ref|ZP_16605407.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL053PA1]
gi|422534089|ref|ZP_16610013.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL072PA1]
gi|422542616|ref|ZP_16618466.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA1]
gi|422552509|ref|ZP_16628300.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA3]
gi|422554461|ref|ZP_16630233.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA2]
gi|422561242|ref|ZP_16636929.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA1]
gi|422568927|ref|ZP_16644545.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA2]
gi|289159923|gb|EFD08101.1| pseudouridine synthase, RluA family [Propionibacterium acnes J165]
gi|291376668|gb|ADE00523.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes SK137]
gi|313772526|gb|EFS38492.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL074PA1]
gi|313807256|gb|EFS45743.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA2]
gi|313809762|gb|EFS47483.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL083PA1]
gi|313818302|gb|EFS56016.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL046PA2]
gi|313820064|gb|EFS57778.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA1]
gi|313823127|gb|EFS60841.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA2]
gi|313825596|gb|EFS63310.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL063PA1]
gi|313830671|gb|EFS68385.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL007PA1]
gi|313833891|gb|EFS71605.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL056PA1]
gi|314925486|gb|EFS89317.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL036PA3]
gi|314960263|gb|EFT04365.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA2]
gi|314968093|gb|EFT12192.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL037PA1]
gi|314973673|gb|EFT17769.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL053PA1]
gi|314976266|gb|EFT20361.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL045PA1]
gi|314978249|gb|EFT22343.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL072PA2]
gi|314983525|gb|EFT27617.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA1]
gi|314987713|gb|EFT31804.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA2]
gi|314990192|gb|EFT34283.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA3]
gi|315084579|gb|EFT56555.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL027PA2]
gi|315085915|gb|EFT57891.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA3]
gi|315088667|gb|EFT60643.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL072PA1]
gi|315096293|gb|EFT68269.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL038PA1]
gi|327325929|gb|EGE67719.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL096PA2]
gi|327330628|gb|EGE72374.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL097PA1]
gi|327332198|gb|EGE73935.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL096PA3]
gi|327442820|gb|EGE89474.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL013PA2]
gi|327446191|gb|EGE92845.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL043PA2]
gi|327447826|gb|EGE94480.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL043PA1]
gi|328753730|gb|EGF67346.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL020PA1]
gi|328760574|gb|EGF74142.1| RNA pseudouridine synthase, RluA family [Propionibacterium acnes
HL099PA1]
gi|332675185|gb|AEE72001.1| pseudouridylate synthase [Propionibacterium acnes 266]
gi|340773346|gb|EGR95838.1| pseudouridine synthase, RluA family [Propionibacterium acnes SK182]
gi|353556857|gb|EHC26226.1| hypothetical protein HMPREF1003_01279 [Propionibacterium sp.
5_U_42AFAA]
gi|365743659|gb|AEW78856.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes TypeIA2 P.acn33]
gi|379977469|gb|EIA10794.1| Ribosomal large subunit pseudouridine synthase D [Propionibacterium
acnes PRP-38]
gi|407903762|gb|AFU40592.1| pseudouridylate synthase [Propionibacterium acnes C1]
Length = 306
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|206967734|ref|ZP_03228690.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|206736654|gb|EDZ53801.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
Length = 307
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|161525362|ref|YP_001580374.1| RluA family pseudouridine synthase [Burkholderia multivorans ATCC
17616]
gi|221201329|ref|ZP_03574368.1| pseudouridine synthase, RluA family [Burkholderia multivorans
CGD2M]
gi|221208809|ref|ZP_03581807.1| pseudouridine synthase, RluA family [Burkholderia multivorans CGD2]
gi|221214111|ref|ZP_03587084.1| pseudouridine synthase, RluA family [Burkholderia multivorans CGD1]
gi|160342791|gb|ABX15877.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
17616]
gi|221166288|gb|EED98761.1| pseudouridine synthase, RluA family [Burkholderia multivorans CGD1]
gi|221171265|gb|EEE03714.1| pseudouridine synthase, RluA family [Burkholderia multivorans CGD2]
gi|221178597|gb|EEE11005.1| pseudouridine synthase, RluA family [Burkholderia multivorans
CGD2M]
Length = 316
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 224 TESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
++ +V+DKPAG +V G + + E RA L H++D T G ++LA
Sbjct: 88 DDAMLVIDKPAGVAVHGGSGVAFGVIEQLRQARPRA----KFLELVHRLDRETSGVLMLA 143
Query: 281 RTQEYCSIFHRKIREKKVKKLYLA 304
+ + H +IRE ++ K Y A
Sbjct: 144 KKRTALVALHEQIRENRIDKRYFA 167
>gi|417288679|ref|ZP_12075964.1| rRNA pseudouridylate synthase C [Escherichia coli TW07793]
gi|425299506|ref|ZP_18689521.1| pseudouridine synthase [Escherichia coli 07798]
gi|386247471|gb|EII93644.1| rRNA pseudouridylate synthase C [Escherichia coli TW07793]
gi|408220015|gb|EKI44097.1| pseudouridine synthase [Escherichia coli 07798]
Length = 319
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|289805597|ref|ZP_06536226.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 274
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 49 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 104
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 105 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 134
>gi|437420801|ref|ZP_20754666.1| 23S rRNA pseudouridylate synthase C, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435201053|gb|ELN85000.1| 23S rRNA pseudouridylate synthase C, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
Length = 234
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|404254692|ref|ZP_10958660.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 373
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G T IE + L + H++D T G +++ART +
Sbjct: 115 IVLNKPPGLATQGGTKTIEHVDGLLDALQDDLEGRPKLVHRLDKDTSGALLIARTARAAA 174
Query: 288 IFHRKIREKKVKKLYLAL 305
F + + +K Y AL
Sbjct: 175 YFSKSFSSRTARKTYWAL 192
>gi|423516044|ref|ZP_17492525.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
gi|401165887|gb|EJQ73197.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
Length = 307
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVH--------VHPKRFPRCYDIDWNSRIIAVT 224
KG TV Q+ + +++++ G L+VH V P+ + + + ++ V
Sbjct: 45 KGVTVNGEQRRW-----NELLKEGDKLQVHMFMEEEYGVEPE-YGELNVVFEDDHVLIVN 98
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+ + P+ + GT N+ F + GL T +R H++D T G VV A+ +
Sbjct: 99 KQGQMDTHPSEKNGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRI 154
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 155 AGAIMDRLLMERKIKRTYAALVEGKV 180
>gi|421187005|ref|ZP_15644385.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB418]
gi|399964712|gb|EJN99347.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB418]
Length = 302
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRT--THQ 268
D RI++ E ++++DKPAG + + N ++ + L + P H+
Sbjct: 81 DRRLRILSEKEDYLLVDKPAGMKMHPHSPNETDTLLNYVEAQLKGHLSRSCPAHAFMVHR 140
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
ID T G V++A+ I + + +K++K+ YLA + L
Sbjct: 141 IDRDTSGVVIIAKNPLAVGILDQLLAKKRIKRTYLAWVSGNL 182
>gi|354722976|ref|ZP_09037191.1| 23S rRNA pseudouridylate synthase C [Enterobacter mori LMG 25706]
Length = 315
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + ++ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLQKVAALSDVILYEDDYILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|153000233|ref|YP_001365914.1| RluA family pseudouridine synthase [Shewanella baltica OS185]
gi|151364851|gb|ABS07851.1| pseudouridine synthase, RluA family [Shewanella baltica OS185]
Length = 329
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 106 DRILHEDNHLIVLNKPAGIAVHGGSG--VDYGVIEALRSLRPQQKFLELVHRLDKDTSGV 163
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 164 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 195
>gi|406956974|gb|EKD84984.1| hypothetical protein ACD_38C00119G0010 [uncultured bacterium]
Length = 256
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLR-TTHQIDNCTEGCVVLARTQEYC 286
+V++KPAG V EE+ A R + P H++D T G +++A+TQ
Sbjct: 17 LVVEKPAGLVVDPADTVKEETLADILIRDFKINLPRGGIVHRLDKDTSGILLVAKTQAAL 76
Query: 287 SIFHRKIREKKVKKLYLAL 305
+ +++K KK YLAL
Sbjct: 77 ENLQFQFKDRKTKKEYLAL 95
>gi|416897210|ref|ZP_11926980.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_7v]
gi|417112806|ref|ZP_11964726.1| rRNA pseudouridylate synthase C [Escherichia coli 1.2741]
gi|422782090|ref|ZP_16834875.1| RluA family protein pseudouridine synthase [Escherichia coli
TW10509]
gi|422800502|ref|ZP_16849000.1| RluA family protein pseudouridine synthase [Escherichia coli M863]
gi|323967027|gb|EGB62453.1| RluA family protein pseudouridine synthase [Escherichia coli M863]
gi|323976541|gb|EGB71629.1| RluA family protein pseudouridine synthase [Escherichia coli
TW10509]
gi|327253484|gb|EGE65122.1| pseudouridine synthase, RluA family protein [Escherichia coli
STEC_7v]
gi|386142416|gb|EIG83554.1| rRNA pseudouridylate synthase C [Escherichia coli 1.2741]
Length = 319
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDEHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|217976505|ref|YP_002360652.1| pseudouridine synthase [Methylocella silvestris BL2]
gi|217501881|gb|ACK49290.1| pseudouridine synthase [Methylocella silvestris BL2]
Length = 234
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 213 DIDWNSRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTH 267
+ + N+R++ +V+DKPAG +V GG N+E A F GL H
Sbjct: 10 EAELNARLLYRDGLMLVIDKPAGVAVHRGPKGGA--NLE---AAFHWLRFGLPRSPALAH 64
Query: 268 QIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
++D T GC+VL R + ++ K+ K Y+++
Sbjct: 65 RLDRDTSGCLVLGRHHKALEKLGLLFKQGKIGKTYVSIVNG 105
>gi|212557318|gb|ACJ29772.1| Pseudouridine synthase, RluD [Shewanella piezotolerans WP3]
Length = 308
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
+RII + +VL+KP+G +V G + + A R+L L H++D T G
Sbjct: 84 ENRIIYEDKFIIVLNKPSGIAVHGGSGV--DFGVIEAMRSLRTQQKFLELVHRLDKDTSG 141
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++R KK++K YLAL
Sbjct: 142 LLLIAKKRSALKHLHDQLRYKKMQKDYLAL 171
>gi|254252865|ref|ZP_04946183.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
dolosa AUO158]
gi|124895474|gb|EAY69354.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
dolosa AUO158]
Length = 341
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V+DKPAG +V G + + +A L H++D T G ++L
Sbjct: 109 VLYEDDAMLVIDKPAGVAVHGGS-GVSFGVIEQLRQARPRAKFLELVHRLDRETSGVLML 167
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLA 304
A+ + H +IRE ++ K Y A
Sbjct: 168 AKKRAALVGLHEQIRENRIDKRYFA 192
>gi|421844224|ref|ZP_16277382.1| 23S rRNA pseudouridylate synthase C [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|411774379|gb|EKS57869.1| 23S rRNA pseudouridylate synthase C [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|455642246|gb|EMF21412.1| 23S rRNA pseudouridylate synthase C [Citrobacter freundii GTC
09479]
Length = 317
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|417958491|ref|ZP_12601405.1| hypothetical protein l13_18170 [Neisseria weaveri ATCC 51223]
gi|343966705|gb|EGV34958.1| hypothetical protein l13_18170 [Neisseria weaveri ATCC 51223]
Length = 338
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V++KP+GT+V G + + RA L H++D T G +++
Sbjct: 93 IVYEDDAMLVINKPSGTAVHGGS-GVSFGVIEQVRRARPQAKYLELVHRLDKDTSGLLMI 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A+ + H IR KK+YLA+ L
Sbjct: 152 AKKRSALVKLHEAIRNDHPKKIYLAVGVGKL 182
>gi|288921576|ref|ZP_06415849.1| pseudouridine synthase [Frankia sp. EUN1f]
gi|288347046|gb|EFC81350.1| pseudouridine synthase [Frankia sp. EUN1f]
Length = 279
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E+ + LDKP G +V G E S A L H+ID T G V+ A+
Sbjct: 17 EAVLALDKPVGVAVMG-----ERHDTDLVSMAREAGEELFPAHRIDKVTSGVVLFAKQLR 71
Query: 285 YCSIFHRKIREKKVKKLYLALT 306
+ R+ + V K YLALT
Sbjct: 72 HHGDLTRQFNRRTVDKTYLALT 93
>gi|228951772|ref|ZP_04113871.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|423423472|ref|ZP_17400503.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|423505013|ref|ZP_17481604.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449088180|ref|YP_007420621.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|228807894|gb|EEM54414.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|401115162|gb|EJQ23015.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|402454879|gb|EJV86667.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449021937|gb|AGE77100.1| Pseudouridine synthase [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 307
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAERGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|238795959|ref|ZP_04639471.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
mollaretii ATCC 43969]
gi|238720164|gb|EEQ11968.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
mollaretii ATCC 43969]
Length = 319
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLIAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERVVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|456739539|gb|EMF64078.1| pseudouridylate synthase [Propionibacterium acnes FZ1/2/0]
Length = 306
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|323447657|gb|EGB03570.1| hypothetical protein AURANDRAFT_15032 [Aureococcus anophagefferens]
Length = 221
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 220 IIAVTESHVVLDKPAG-----TSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
++ T VV+DKP+G + G + A R H++D+ T
Sbjct: 6 VVGETSRWVVVDKPSGVPCHASDKGDGVLTLLRRDAVERGERDAAVAEYRLVHRLDDGTS 65
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
GC+ +A+ +E ++ RE++ +K Y+ LT
Sbjct: 66 GCLAIAKDRETATLLGAAFRERRARKAYVGLT 97
>gi|189349901|ref|YP_001945529.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
multivorans ATCC 17616]
gi|189333923|dbj|BAG42993.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
multivorans ATCC 17616]
Length = 334
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 224 TESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
++ +V+DKPAG +V G + + E RA L H++D T G ++LA
Sbjct: 106 DDAMLVIDKPAGVAVHGGSGVAFGVIEQLRQARPRA----KFLELVHRLDRETSGVLMLA 161
Query: 281 RTQEYCSIFHRKIREKKVKKLYLA 304
+ + H +IRE ++ K Y A
Sbjct: 162 KKRTALVALHEQIRENRIDKRYFA 185
>gi|88860180|ref|ZP_01134819.1| hypothetical protein PTD2_19250 [Pseudoalteromonas tunicata D2]
gi|88818174|gb|EAR27990.1| hypothetical protein PTD2_19250 [Pseudoalteromonas tunicata D2]
Length = 219
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 229 VLDKPAGTSVGGTTDNIEESCATFASRALGL-TTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+ +KPAG S E+ A F A L L + H++D T G ++LAR+ E +
Sbjct: 13 IFNKPAGMSFH------SETQAGFVVLAEQLCQEKLYSVHRLDKLTSGLLILARSSEAAA 66
Query: 288 IFHRKIREKKVKKLYLALT 306
F +K + K+YLAL+
Sbjct: 67 RFTEMFSQKLINKVYLALS 85
>gi|423530749|ref|ZP_17507194.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|402446083|gb|EJV77947.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
Length = 307
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEKMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|393721178|ref|ZP_10341105.1| RluA family pseudouridine synthase [Sphingomonas echinoides ATCC
14820]
Length = 369
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G T IE + L + H++D T G +++ART +
Sbjct: 111 IVLNKPPGLATQGGTKTIEHVDGLLDALQDDLEGRPKLVHRLDKDTSGALLIARTARAAA 170
Query: 288 IFHRKIREKKVKKLYLAL 305
F + + +K Y AL
Sbjct: 171 YFSKSFSSRTARKTYWAL 188
>gi|383936460|ref|ZP_09989886.1| tRNA pseudouridine32 synthase [Rheinheimera nanhaiensis E407-8]
gi|383702524|dbj|GAB59977.1| tRNA pseudouridine32 synthase [Rheinheimera nanhaiensis E407-8]
Length = 234
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
VVLDK AG S + ++ A L PL H++D T G +VLAR+ +
Sbjct: 15 VVLDKAAGVSF-----HSDDGAGLVVQAAQQLGYPLYPVHRLDKVTSGIIVLARSALVAA 69
Query: 288 IFHRKIREKKVKKLYLALTTA 308
+V+K YLAL
Sbjct: 70 ELTALFSAHQVEKYYLALAQG 90
>gi|260432477|ref|ZP_05786448.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416305|gb|EEX09564.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 209 PRCYDIDWN--SRIIAVTESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT 265
PR D D + + HV+ L+KP G V G + + G R
Sbjct: 79 PRVTDADAKMIQSCVIYRDDHVLALNKPHGLPVQGGSGQARHVDGLAEALRFGYDENPRL 138
Query: 266 THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
H++D T G +++ART+E R + +K+Y AL G+ T Y+ I
Sbjct: 139 VHRLDKDTSGVLLMARTREAAKGLTAAFRHRNTRKIYWALV-----AGVPTPYLGEIKTG 193
>gi|146311257|ref|YP_001176331.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. 638]
gi|145318133|gb|ABP60280.1| ribosomal large subunit pseudouridine synthase C [Enterobacter sp.
638]
Length = 315
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 23/128 (17%)
Query: 221 IAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGV 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIA 325
+++A+ + H ++REK ++K YLAL APL I+ R +
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIV--- 207
Query: 326 PRLVSEGK 333
R+ SEGK
Sbjct: 208 -RVNSEGK 214
>gi|116490290|ref|YP_809834.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni PSU-1]
gi|290889676|ref|ZP_06552765.1| hypothetical protein AWRIB429_0155 [Oenococcus oeni AWRIB429]
gi|419759294|ref|ZP_14285599.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB304]
gi|419857149|ref|ZP_14379859.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB202]
gi|419858220|ref|ZP_14380898.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni DSM
20252 = AWRIB129]
gi|421183810|ref|ZP_15641239.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB318]
gi|421192430|ref|ZP_15649696.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB548]
gi|116091015|gb|ABJ56169.1| Pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni PSU-1]
gi|290480673|gb|EFD89308.1| hypothetical protein AWRIB429_0155 [Oenococcus oeni AWRIB429]
gi|399903989|gb|EJN91452.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB304]
gi|399968447|gb|EJO02880.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB318]
gi|399969547|gb|EJO03881.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB548]
gi|410498214|gb|EKP89670.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB202]
gi|410499144|gb|EKP90581.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni DSM
20252 = AWRIB129]
Length = 302
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRT--THQ 268
D RI++ E ++++DKPAG + + N ++ + L + P H+
Sbjct: 81 DRRLRILSEKEDYLLVDKPAGMKMHPHSPNETDTLLNYVEAQLKGHLSRSCPAHAFMVHR 140
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
ID T G V++A+ I + + +K++K+ YLA + L
Sbjct: 141 IDRDTSGVVIIAKNPLAVGILDQLLAKKRIKRTYLAWVSGNL 182
>gi|50842255|ref|YP_055482.1| pseudouridylate synthase [Propionibacterium acnes KPA171202]
gi|335054004|ref|ZP_08546829.1| pseudouridine synthase, RluA family [Propionibacterium sp. 434-HC2]
gi|387503151|ref|YP_005944380.1| pseudouridylate synthase [Propionibacterium acnes 6609]
gi|422455898|ref|ZP_16532567.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL030PA1]
gi|50839857|gb|AAT82524.1| pseudouridylate synthase [Propionibacterium acnes KPA171202]
gi|315107090|gb|EFT79066.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL030PA1]
gi|333765785|gb|EGL43117.1| pseudouridine synthase, RluA family [Propionibacterium sp. 434-HC2]
gi|335277196|gb|AEH29101.1| pseudouridylate synthase [Propionibacterium acnes 6609]
Length = 306
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|374319908|ref|YP_005073037.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
terrae HPL-003]
gi|357198917|gb|AET56814.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
terrae HPL-003]
Length = 303
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 185 RITHVDQIVEAGTYLRVHVHP----KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H QI AG LR+ + P PR YD+ +++ + +V KPAG +V
Sbjct: 49 RLRHEKQIEFAGDRLRLALFPVTNLGVTPRWYDL----KVLYEDDFCLVAHKPAGMAVHP 104
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
G + ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 105 DGAVKEGPLTLDHAVASYYEMN-GIHAAVRHVHRLDTDTTGPVLYAKNEFALLKLDEQMR 163
Query: 295 EKKVKKLYLALTTAPLP 311
K + + Y+AL +P
Sbjct: 164 TKDMGRRYVALVRGEVP 180
>gi|229177799|ref|ZP_04305172.1| Pseudouridine synthase [Bacillus cereus 172560W]
gi|228605590|gb|EEK63038.1| Pseudouridine synthase [Bacillus cereus 172560W]
Length = 307
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|229189473|ref|ZP_04316490.1| Pseudouridine synthase [Bacillus cereus ATCC 10876]
gi|228594064|gb|EEK51866.1| Pseudouridine synthase [Bacillus cereus ATCC 10876]
Length = 307
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|85707668|ref|ZP_01038734.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85689202|gb|EAQ29205.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 395
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 193 VEAGTYLRV---HVHPKRFPRCYD-------IDWNSRIIAVTESHVVLDKPAGTSVGG-- 240
+EAG LRV KR P+ + + +I T S +VL+KP G + G
Sbjct: 60 LEAGQVLRVPPGGEDQKRGPKPRRPLTEEEIAEARAMVIRETPSAIVLNKPPGLATQGGS 119
Query: 241 -TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVK 299
TT +++ F R H++D T G +++ART + + RK + +
Sbjct: 120 KTTKHVDGLLDAFVDDQEEDAPRPRLVHRLDKDTSGVLLIARTPGSAATYSRKFSGRSAR 179
Query: 300 KLYLAL 305
K+Y AL
Sbjct: 180 KVYWAL 185
>gi|407776138|ref|ZP_11123427.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407280854|gb|EKF06421.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 367
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I E + ++KPAG +V GGT N+ A + P + H++D T G ++
Sbjct: 115 VIFYDELVLAINKPAGLAVQGGTNTNVHVDGMLDALKLDSKERP-KLVHRLDKDTSGVLL 173
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTA 308
LAR+ + ++K +KLY A+ T
Sbjct: 174 LARSASAAHALTKAFKDKSTRKLYWAIVTG 203
>gi|229068942|ref|ZP_04202236.1| Pseudouridine synthase [Bacillus cereus F65185]
gi|365162083|ref|ZP_09358217.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|228714226|gb|EEL66107.1| Pseudouridine synthase [Bacillus cereus F65185]
gi|363619204|gb|EHL70529.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
Length = 307
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|126173940|ref|YP_001050089.1| RluA family pseudouridine synthase [Shewanella baltica OS155]
gi|125997145|gb|ABN61220.1| ribosomal large subunit pseudouridine synthase C [Shewanella
baltica OS155]
Length = 329
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 105 EDRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSG 162
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 163 VLLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 195
>gi|94676891|ref|YP_588880.1| ribosomal large subunit pseudouridine synthase C [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|94220041|gb|ABF14200.1| ribosomal large subunit pseudouridine synthase C [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 322
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALG-LTTPLRTTHQIDNCTEGCVVLARTQEY 285
+VL+KPAGT+V G + S RAL L H++D T G +++A+ +
Sbjct: 102 LVLNKPAGTAVHG---GYKLSFGVIEGLRALWPFAKFLELIHRLDRDTSGALLVAKKRSA 158
Query: 286 CSIFHRKIREKKVKKLYLAL 305
+ H ++R K + K YLAL
Sbjct: 159 LRLMHEQLRMKNINKHYLAL 178
>gi|398797560|ref|ZP_10556881.1| pseudouridine synthase, RluA family [Pantoea sp. GM01]
gi|398102766|gb|EJL92944.1| pseudouridine synthase, RluA family [Pantoea sp. GM01]
Length = 318
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 MVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGILLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
H ++REK ++K YLAL P
Sbjct: 159 ALRSLHEQLREKGMQKDYLALVRGDWP 185
>gi|345875345|ref|ZP_08827139.1| hypothetical protein l11_12230 [Neisseria weaveri LMG 5135]
gi|343969253|gb|EGV37470.1| hypothetical protein l11_12230 [Neisseria weaveri LMG 5135]
Length = 338
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ ++ +V++KP+GT+V G + + RA L H++D T G +++
Sbjct: 93 IVYEDDAMLVINKPSGTAVHGGS-GVSFGVIEQVRRARPQAKYLELVHRLDKDTSGLLMI 151
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
A+ + H IR KK+YLA+ L
Sbjct: 152 AKKRSALVKLHEAIRNDHPKKIYLAVGVGKL 182
>gi|422556537|ref|ZP_16632291.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL025PA2]
gi|328759180|gb|EGF72796.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL025PA2]
Length = 285
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 60 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 119
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 120 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 155
>gi|57167607|ref|ZP_00366747.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Campylobacter coli RM2228]
gi|305433113|ref|ZP_07402269.1| RluA family pseudouridine synthase [Campylobacter coli JV20]
gi|419541708|ref|ZP_14080846.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2548]
gi|419544211|ref|ZP_14083176.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2553]
gi|419546523|ref|ZP_14085276.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2680]
gi|419555612|ref|ZP_14093624.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 84-2]
gi|419561923|ref|ZP_14099451.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1091]
gi|419565957|ref|ZP_14103225.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1148]
gi|419573095|ref|ZP_14109906.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1891]
gi|419592545|ref|ZP_14127791.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9854]
gi|419599843|ref|ZP_14134622.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23344]
gi|57020729|gb|EAL57393.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Campylobacter coli RM2228]
gi|304443814|gb|EFM36471.1| RluA family pseudouridine synthase [Campylobacter coli JV20]
gi|380522199|gb|EIA47891.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2680]
gi|380524351|gb|EIA49963.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2548]
gi|380525533|gb|EIA51049.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2553]
gi|380535890|gb|EIA60561.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 84-2]
gi|380542564|gb|EIA66797.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1091]
gi|380547949|gb|EIA71863.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1148]
gi|380552367|gb|EIA75928.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1891]
gi|380571961|gb|EIA94308.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9854]
gi|380583821|gb|EIB05330.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23344]
Length = 321
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGT--------TDNIEESCATFASRALGLTTPL 263
+DID++ I+ E +VL+KP+ V G D + E T ++ LG
Sbjct: 70 FDIDFDIEILYEDEDLLVLNKPSNLVVHGAKSVRSATLVDWLIEKQYTLST--LGGEVRA 127
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ ++ +K + ++YLAL PL
Sbjct: 128 GLVHRLDKETSGAILIAKNNFTHQKLSEQLSDKTMGRIYLALIDLPLK 175
>gi|419588372|ref|ZP_14124194.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 317/04]
gi|380570075|gb|EIA92505.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 317/04]
Length = 321
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGT--------TDNIEESCATFASRALGLTTPL 263
+DID++ I+ E +VL+KP+ V G D + E T ++ LG
Sbjct: 70 FDIDFDIEILYEDEDLLVLNKPSNLVVHGAKSVKSATLVDWLIEKQYTLST--LGGEVRA 127
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ ++ +K + ++YLAL PL
Sbjct: 128 GLVHRLDKETSGAILIAKNNFTHQKLSEQLSDKTMGRIYLALIDLPLK 175
>gi|419536489|ref|ZP_14075970.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 111-3]
gi|419540657|ref|ZP_14079891.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z163]
gi|419549014|ref|ZP_14087623.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2685]
gi|419550911|ref|ZP_14089390.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2688]
gi|419553213|ref|ZP_14091473.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2692]
gi|419554296|ref|ZP_14092440.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2698]
gi|419558219|ref|ZP_14096100.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 80352]
gi|419561083|ref|ZP_14098711.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 86119]
gi|419564301|ref|ZP_14101684.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1098]
gi|419568744|ref|ZP_14105876.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1417]
gi|419569920|ref|ZP_14106976.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 7--1]
gi|419572491|ref|ZP_14109404.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 132-6]
gi|419574881|ref|ZP_14111581.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1909]
gi|419577849|ref|ZP_14114393.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 59-2]
gi|419579268|ref|ZP_14115685.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1948]
gi|419580721|ref|ZP_14117041.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1957]
gi|419582802|ref|ZP_14118996.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1961]
gi|419585023|ref|ZP_14121086.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 202/04]
gi|419586665|ref|ZP_14122623.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 67-8]
gi|419590846|ref|ZP_14126209.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 37/05]
gi|419594888|ref|ZP_14130005.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23336]
gi|419597464|ref|ZP_14132439.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23341]
gi|419598023|ref|ZP_14132912.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23342]
gi|419602392|ref|ZP_14136971.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 151-9]
gi|419605113|ref|ZP_14139562.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9853]
gi|419606421|ref|ZP_14140787.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9860]
gi|419608035|ref|ZP_14142234.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H6]
gi|419610134|ref|ZP_14144206.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H8]
gi|419613642|ref|ZP_14147438.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H56]
gi|419616437|ref|ZP_14150085.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z156]
gi|380516423|gb|EIA42556.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z163]
gi|380518257|gb|EIA44356.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 111-3]
gi|380526757|gb|EIA52198.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2685]
gi|380529338|gb|EIA54504.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2692]
gi|380529451|gb|EIA54606.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2688]
gi|380533046|gb|EIA58006.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 2698]
gi|380536357|gb|EIA60993.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 86119]
gi|380540006|gb|EIA64336.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 80352]
gi|380542908|gb|EIA67134.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1098]
gi|380545172|gb|EIA69166.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1417]
gi|380548735|gb|EIA72634.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 7--1]
gi|380550871|gb|EIA74502.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 132-6]
gi|380554546|gb|EIA78008.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1909]
gi|380556502|gb|EIA79753.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 59-2]
gi|380557837|gb|EIA81035.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1948]
gi|380560532|gb|EIA83609.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1957]
gi|380562931|gb|EIA85778.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 202/04]
gi|380564583|gb|EIA87387.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 1961]
gi|380565718|gb|EIA88428.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 67-8]
gi|380569989|gb|EIA92421.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 37/05]
gi|380573564|gb|EIA95706.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23341]
gi|380574758|gb|EIA96851.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23336]
gi|380577662|gb|EIA99659.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 23342]
gi|380578672|gb|EIB00503.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9853]
gi|380581382|gb|EIB03109.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli 151-9]
gi|380586032|gb|EIB07349.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H6]
gi|380586940|gb|EIB08192.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli LMG 9860]
gi|380590695|gb|EIB11699.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H8]
gi|380593921|gb|EIB14734.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli H56]
gi|380595817|gb|EIB16541.1| ribosomal large subunit pseudouridine synthase A [Campylobacter
coli Z156]
Length = 321
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 212 YDIDWNSRIIAVTESHVVLDKPAGTSVGGT--------TDNIEESCATFASRALGLTTPL 263
+DID++ I+ E +VL+KP+ V G D + E T ++ LG
Sbjct: 70 FDIDFDIEILYEDEDLLVLNKPSNLVVHGAKSVKSATLVDWLIEKQYTLST--LGGEVRA 127
Query: 264 RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ ++ +K + ++YLAL PL
Sbjct: 128 GLVHRLDKETSGAILIAKNNFTHQKLSEQLSDKTMGRIYLALIDLPLK 175
>gi|365134632|ref|ZP_09343347.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613591|gb|EHL65100.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 316
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 220 IIAVTESHVVL--DKPAGTSVGGTTDNIEESCATFASRAL------GLTTPLRT-----T 266
+ AV E VL DKPAG V TD + T +RAL G P R
Sbjct: 82 LCAVYEDSDVLVADKPAGLPV---TDEDGRTADTLINRALLYLYHKGEYAPERGWTPRLC 138
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALT 306
H++D T G V++A+TQ+ ++ ++E+ ++K YL +T
Sbjct: 139 HRLDTGTSGLVLIAKTQQAEALLLHLVKERMIEKKYLCVT 178
>gi|292487948|ref|YP_003530825.1| pseudouridylate synthase [Erwinia amylovora CFBP1430]
gi|292899167|ref|YP_003538536.1| ribosomal large subunit pseudouridine synthase C [Erwinia amylovora
ATCC 49946]
gi|428784882|ref|ZP_19002373.1| pseudouridylate synthase [Erwinia amylovora ACW56400]
gi|291199015|emb|CBJ46126.1| ribosomal large subunit pseudouridine synthase C [Erwinia amylovora
ATCC 49946]
gi|291553372|emb|CBA20417.1| pseudouridylate synthase [Erwinia amylovora CFBP1430]
gi|426276444|gb|EKV54171.1| pseudouridylate synthase [Erwinia amylovora ACW56400]
Length = 320
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 IIYEDDYLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+++A+ + H ++REK ++K YLAL P
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWP 185
>gi|237731018|ref|ZP_04561499.1| 23S rRNA pseudouridylate synthase [Citrobacter sp. 30_2]
gi|395227749|ref|ZP_10406075.1| 23S rRNA pseudouridylate synthase [Citrobacter sp. A1]
gi|424728548|ref|ZP_18157153.1| 23s rrna pseudouridylate synthase [Citrobacter sp. L17]
gi|226906557|gb|EEH92475.1| 23S rRNA pseudouridylate synthase [Citrobacter sp. 30_2]
gi|394719077|gb|EJF24698.1| 23S rRNA pseudouridylate synthase [Citrobacter sp. A1]
gi|422896419|gb|EKU36201.1| 23s rrna pseudouridylate synthase [Citrobacter sp. L17]
Length = 331
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 108 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 163
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 164 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 193
>gi|262375074|ref|ZP_06068308.1| 23S rRNA pseudouridylate synthase [Acinetobacter lwoffii SH145]
gi|262310087|gb|EEY91216.1| 23S rRNA pseudouridylate synthase [Acinetobacter lwoffii SH145]
gi|407006864|gb|EKE22676.1| hypothetical protein ACD_6C00761G0002 [uncultured bacterium]
Length = 318
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 31/141 (21%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT---------HQ 268
+R+I E +V++KP+G +V G + A GL LR H+
Sbjct: 95 ARVIYEDEGLMVVNKPSGIAVHGGS-----------GVAYGLIEGLRAATGKKYLELIHR 143
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA-----------LTTAPLPVGIMTH 317
ID T G V++++ + +RE K+KK Y A L APL + +
Sbjct: 144 IDRDTSGLVMISKKRSVLKTLQDMLREHKIKKTYAAVVKGQVSLDKQLIDAPLHRYELAN 203
Query: 318 YMRPINIAPRLVSEGKTIFGL 338
R + ++P+ E KT + +
Sbjct: 204 GERRVCVSPKEGKESKTQWNV 224
>gi|197104733|ref|YP_002130110.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
gi|196478153|gb|ACG77681.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
Length = 325
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S +I E + L+KP+G +V G T ++ GL P R H++D T G
Sbjct: 88 RSLVIYEDEDVLALNKPSGLAVQGGTKTTRHIDGLLSAWGEGLERP-RLVHRLDRDTSGV 146
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+VL +T + +++ +K+Y AL A LP
Sbjct: 147 LVLGKTPGAAAKLAGAFAKRRTQKIYWAL-VAGLP 180
>gi|114766871|ref|ZP_01445793.1| ribosomal large subunit pseudouridine synthase C [Pelagibaca
bermudensis HTCC2601]
gi|114540917|gb|EAU43977.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
HTCC2601]
Length = 350
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + R H++D T G ++LART+
Sbjct: 100 DDHIIALNKPPGLPVQGGSKQERHVDGLAEALRFDYDEKPRLVHRLDKDTSGVLLLARTR 159
Query: 284 EYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIA 325
E IR K+ +K+Y A+ G+ T Y+ I
Sbjct: 160 EIAQALTGAIRHKQTRKIYWAVV-----AGVPTPYLGEIRFG 196
>gi|160874866|ref|YP_001554182.1| RluA family pseudouridine synthase [Shewanella baltica OS195]
gi|160860388|gb|ABX48922.1| pseudouridine synthase, RluA family [Shewanella baltica OS195]
Length = 329
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 105 EDRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSG 162
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 163 VLLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 195
>gi|54022650|ref|YP_116892.1| RNA pseudouridylate synthase [Nocardia farcinica IFM 10152]
gi|54014158|dbj|BAD55528.1| putative RNA pseudouridylate synthase [Nocardia farcinica IFM
10152]
Length = 260
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 213 DIDWNSR----IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQ 268
D DW+ ++A ++ + L+KPAG SV G E A G L H+
Sbjct: 2 DTDWSRLRERCLLAEDDAVLALNKPAGISVTG-----ERHDTDIVELAAGAGERLFPVHR 56
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
ID T G V+LA+ R+ ++ +K YLA+
Sbjct: 57 IDKVTSGLVLLAKDLAAHGTLTRQFTKRTAEKAYLAVVAG 96
>gi|326388573|ref|ZP_08210166.1| pseudouridylate synthase [Novosphingobium nitrogenifigens DSM
19370]
gi|326206824|gb|EGD57648.1| pseudouridylate synthase [Novosphingobium nitrogenifigens DSM
19370]
Length = 219
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 228 VVLDKPAGTSV-----GGTT--DNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
+V+DKPAG + GG + D ++E F R P+ H++D T GC++LA
Sbjct: 14 LVIDKPAGLPLDRPRAGGISLDDRLDELRLGFQRR----PAPV---HRLDRDTSGCLLLA 66
Query: 281 RTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
R + F +KV K+YL + P+
Sbjct: 67 RNPKALKRFAAAFEARKVIKIYLGVVAGPV 96
>gi|422428349|ref|ZP_16505260.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA1]
gi|422432932|ref|ZP_16509800.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL059PA2]
gi|422435472|ref|ZP_16512329.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL083PA2]
gi|422443290|ref|ZP_16520088.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA1]
gi|422445452|ref|ZP_16522199.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL027PA1]
gi|422454701|ref|ZP_16531381.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA3]
gi|422510910|ref|ZP_16587056.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL059PA1]
gi|422539719|ref|ZP_16615592.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL013PA1]
gi|422547558|ref|ZP_16623374.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA3]
gi|422549412|ref|ZP_16625212.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA1]
gi|422563332|ref|ZP_16639009.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL046PA1]
gi|422569682|ref|ZP_16645289.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL067PA1]
gi|422578952|ref|ZP_16654476.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA4]
gi|313764724|gb|EFS36088.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL013PA1]
gi|313815789|gb|EFS53503.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL059PA1]
gi|314915215|gb|EFS79046.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL005PA4]
gi|314918556|gb|EFS82387.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA1]
gi|314919819|gb|EFS83650.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL050PA3]
gi|314931834|gb|EFS95665.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL067PA1]
gi|314955990|gb|EFT00388.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL027PA1]
gi|314958385|gb|EFT02488.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL002PA1]
gi|315098276|gb|EFT70252.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL059PA2]
gi|315101033|gb|EFT73009.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL046PA1]
gi|327451042|gb|EGE97696.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA3]
gi|327453603|gb|EGF00258.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL083PA2]
gi|328753075|gb|EGF66691.1| pseudouridine synthase, RluA family [Propionibacterium acnes
HL087PA1]
Length = 285
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RII VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 60 RIIHDDSDIVVVDKPAGVAAHPSLGWEGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 119
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 120 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 155
>gi|170732422|ref|YP_001764369.1| RluA family pseudouridine synthase [Burkholderia cenocepacia MC0-3]
gi|169815664|gb|ACA90247.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
MC0-3]
Length = 316
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ ++ +V+DKPAG +V G + + +A L H++D T G
Sbjct: 81 NFDVLYEDDAMLVIDKPAGVAVHGGS-GVAFGVIEQMRQARPRAKFLELVHRLDRETSGI 139
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA 304
++LA+ + H +IRE ++ K Y A
Sbjct: 140 LMLAKKRTALVGLHEQIRENRMDKRYFA 167
>gi|434387841|ref|YP_007098452.1| 23S RNA-specific pseudouridylate synthase [Chamaesiphon minutus PCC
6605]
gi|428018831|gb|AFY94925.1| 23S RNA-specific pseudouridylate synthase [Chamaesiphon minutus PCC
6605]
Length = 626
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 220 IIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
II E + +DKPAG SV G T +++S T R L + T H++D T G ++
Sbjct: 424 IIYEDEYLIAIDKPAGLLSVPGRTIELQDSVLT---RLRALYPEIYTVHRLDRDTSGTLL 480
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLAL 305
LAR + ++ ++V+K+Y A+
Sbjct: 481 LARDKVTYRHLSQQFEARQVRKIYEAI 507
>gi|421253099|ref|ZP_15708464.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
gi|401694834|gb|EJS88328.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_buffalo]
Length = 165
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 61 EKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 116
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G +++A+ + H ++REK V+K YLAL
Sbjct: 117 SGILLVAKKRSALRSLHEQLREKTVQKDYLALVRG 151
>gi|359443594|ref|ZP_09233430.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20429]
gi|358034640|dbj|GAA69679.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20429]
Length = 226
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESH---VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
S+I+ V +H +L+KPAG + + E+ L+ L H++D T
Sbjct: 6 SKILNVVYTHNDFYILEKPAGLNF-----HSEDGPGFVVLAEQQLSQKLYAVHRLDKVTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G ++LAR + + F E + K YLA++ A
Sbjct: 61 GLIILARNKAAAASFTVMFTEHAIAKFYLAISDA 94
>gi|320168624|gb|EFW45523.1| RNA pseudouridylate synthase domain-containing protein 2
[Capsaspora owczarzaki ATCC 30864]
Length = 515
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
R+IA T+ VV+DKPA V + + +G + L H++D T G +V
Sbjct: 188 RVIAETDDLVVIDKPASIPVHVAGRFNVHTVISIMKSEMGYSN-LLGCHRLDRLTSGVLV 246
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+A+ + + R I E++V+K Y+ T P
Sbjct: 247 MAKNRAAAAAVTRLITEREVEKFYICRVTGVFP 279
>gi|219872253|ref|YP_002476628.1| pseudouridylate synthase, 23S RNA-specific [Haemophilus parasuis
SH0165]
gi|219692457|gb|ACL33680.1| pseudouridylate synthase, 23S RNA-specific [Haemophilus parasuis
SH0165]
Length = 236
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 225 ESHV-VLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
++H+ V++KP+G S+ G ++S + G T P H++D T G ++ A +
Sbjct: 34 DNHILVINKPSGLLSIPGNRPEYQDSAMVRVQQKYGFTEP---AHRLDMATSGILLFALS 90
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPL 310
++ R+ RE++ KK Y AL L
Sbjct: 91 KQAEKELKRQFREREPKKHYQALVWGKL 118
>gi|190891935|ref|YP_001978477.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
etli CIAT 652]
gi|190697214|gb|ACE91299.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CIAT 652]
Length = 330
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 206 KRFPRCYDIDWNSR-IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTT 261
K D D SR ++ E +VL+KP G +V G + +I++ + S
Sbjct: 81 KDLKHSSDFDLLSRMVLHEDEKVIVLNKPPGIAVQGGSGVARHIDQMLEAWTSPK---GE 137
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R H++D T G +V+ART+ RE+ KK Y AL
Sbjct: 138 KPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKTYWALVKG 184
>gi|163849730|ref|YP_001637773.1| RluA family pseudouridine synthase [Methylobacterium extorquens
PA1]
gi|163661335|gb|ABY28702.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
PA1]
Length = 468
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPL----RTTHQIDNCTEGCVVLARTQ 283
++L+KP G +V G + + + LT P R H++D T GC+++A+T+
Sbjct: 237 MILNKPFGLAVQGGSGTVRHVDGLLEA----LTGPDGQRPRLVHRLDKDTAGCLIVAKTR 292
Query: 284 EYCSIFHRKIREKKVKKLYLAL 305
S + R + +K+Y AL
Sbjct: 293 LAASTLAKSFRSRAARKIYWAL 314
>gi|429108353|ref|ZP_19170222.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter malonaticus 681]
gi|429109857|ref|ZP_19171627.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter malonaticus 507]
gi|426295076|emb|CCJ96335.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter malonaticus 681]
gi|426311014|emb|CCJ97740.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter malonaticus 507]
Length = 317
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 179
>gi|421562423|ref|ZP_16008250.1| pseudouridine synthase [Neisseria meningitidis NM2795]
gi|421907597|ref|ZP_16337472.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha704]
gi|393291266|emb|CCI73469.1| ribosomal large subunit pseudouridine synthase C [Neisseria
meningitidis alpha704]
gi|402343079|gb|EJU78234.1| pseudouridine synthase [Neisseria meningitidis NM2795]
Length = 330
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+V++KP+G +V G + + RA L H++D T G +++A+ +
Sbjct: 104 LVVNKPSGVAVHGGS-GVSFGVIEQLRRARPEARYLELVHRLDKDTSGLLMVAKKRSALV 162
Query: 288 IFHRKIREKKVKKLYLALTTAPLP 311
H IR KK+YLAL LP
Sbjct: 163 KLHEAIRNDHPKKIYLALGVGKLP 186
>gi|262276054|ref|ZP_06053863.1| ribosomal large subunit pseudouridine synthase C [Grimontia
hollisae CIP 101886]
gi|262219862|gb|EEY71178.1| ribosomal large subunit pseudouridine synthase C [Grimontia
hollisae CIP 101886]
Length = 318
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCV 277
+I + +VL+KP+GT+V GG+ + A A R+L L H+ID T G +
Sbjct: 96 VIYEDDHMLVLNKPSGTAVHGGSGLHF---GAIEAMRSLRPDARFLELVHRIDRDTSGIL 152
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
++A+ + + REK V+K Y ALT
Sbjct: 153 LIAKKRSALRHLQAQFREKTVQKYYFALTMG 183
>gi|366163177|ref|ZP_09462932.1| RluA family pseudouridine synthase [Acetivibrio cellulolyticus CD2]
Length = 322
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 189 VDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTES---HVVLDKPAGTSVGGTTDNI 245
+D+I+E + + K F Y+ D N I+ + H D+ T + T I
Sbjct: 64 IDEILEGKSISEPTDYFKAFTVIYE-DKNLLIVNKKQGIPVHPDKDQAENTLIDLVTAYI 122
Query: 246 EESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
E T S+ G + L H++D T G +++A+ E + KI+ K+VKK Y L
Sbjct: 123 REKEVT--SKTSGFSPAL--CHRLDRNTGGLIIIAKNNEALKVMLEKIKNKEVKKYYQCL 178
Query: 306 TTAPL--PVGIMTHYM 319
+ P GI+ Y+
Sbjct: 179 VRGKMEKPQGILKAYL 194
>gi|170744410|ref|YP_001773065.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168198684|gb|ACA20631.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 469
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 225 ESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ +VL+KP G +V GG+ A RA P R H++D T GC+V+A+T+
Sbjct: 235 QDMMVLNKPYGLAVQGGSGTKRHVDGLLEALRAPDGQKP-RLVHRLDKDTAGCLVIAKTR 293
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ + R + +K+Y AL
Sbjct: 294 LAAATLAKTFRSRAARKIYWALAAG 318
>gi|160872397|ref|ZP_02062529.1| ribosomal large subunit pseudouridine synthase C [Rickettsiella
grylli]
gi|159121196|gb|EDP46534.1| ribosomal large subunit pseudouridine synthase C [Rickettsiella
grylli]
Length = 315
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEG 275
II + +VL+KP+G +V G + A L P L H++D T G
Sbjct: 91 IIFEDKHLLVLNKPSGMAVHGGS-----GITLGVIEAFRLIRPQLKFLELVHRLDRETSG 145
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMT 316
C+++A+ + H +R +KK Y+AL + P +++
Sbjct: 146 CLLMAKKRSILKELHELLRLNGIKKTYIALVSGHWPPSLLS 186
>gi|261346051|ref|ZP_05973695.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
gi|282565938|gb|EFB71473.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
Length = 318
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 26/130 (20%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTE 274
I+ ES +V++KP+GT+V G S +F L P L H++D T
Sbjct: 94 ILYEDESILVINKPSGTAVHGG------SGLSFGVIEGLRALRPEARFLELVHRLDRDTS 147
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPIN 323
G +++A+ + H ++R K+++K YLAL APL I+ R +
Sbjct: 148 GILLVAKKRSALRALHEQLRLKQMQKDYLALVRGNWQSHMKVVQAPLLKNILQSGERIV- 206
Query: 324 IAPRLVSEGK 333
R+ SEGK
Sbjct: 207 ---RVNSEGK 213
>gi|56413826|ref|YP_150901.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362749|ref|YP_002142386.1| 23S rRNA pseudouridylate synthase C [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128083|gb|AAV77589.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197094226|emb|CAR59731.1| ribosomal large subunit pseudouridine synthase C [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
Length = 319
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 94 VILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALHPEA----RFLELVHRLDRDTSG 149
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++REK ++K YLAL
Sbjct: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|421867150|ref|ZP_16298809.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Burkholderia cenocepacia H111]
gi|358072564|emb|CCE49687.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Burkholderia cenocepacia H111]
Length = 316
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ ++ +V+DKPAG +V G + + +A L H++D T G
Sbjct: 81 NFDVLYEDDAMLVIDKPAGVAVHGGS-GVAFGVIEQMRQARPRAKFLELVHRLDRETSGI 139
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA 304
++LA+ + H +IRE ++ K Y A
Sbjct: 140 LMLAKKRTALVGLHEQIRENRMDKRYFA 167
>gi|254558792|ref|YP_003065887.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
gi|254266070|emb|CAX21822.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
Length = 468
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 193 VEAGTYLRVHV----HPKRFPR-CYDIDWNSR-----IIAVTESHVVLDKPAGTSVGGTT 242
+E G+ +RV P PR ID ++ I+ ++L+KP G +V G +
Sbjct: 192 LEPGSSVRVPPLKLDQPTERPRSAAKIDGDAEFLRSLILYEDADMMILNKPFGLAVQGGS 251
Query: 243 DNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
+ + LT P R H++D T GC+++A+T+ S + R +
Sbjct: 252 GTVRHVDGLLEA----LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRSRAA 307
Query: 299 KKLYLAL 305
+K+Y AL
Sbjct: 308 RKIYWAL 314
>gi|217973818|ref|YP_002358569.1| RluA family pseudouridine synthase [Shewanella baltica OS223]
gi|217498953|gb|ACK47146.1| pseudouridine synthase, RluA family [Shewanella baltica OS223]
Length = 319
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 96 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 154 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 185
>gi|167854620|ref|ZP_02477401.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
parasuis 29755]
gi|167854375|gb|EDS25608.1| ribosomal large subunit pseudouridine synthase A [Haemophilus
parasuis 29755]
Length = 222
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G ++S + G T P H++D T G ++ A +++
Sbjct: 24 LVINKPSGLLSVPGNRPEYQDSAMVRVQQKYGFTEP---AHRLDMATSGILLFALSKQAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y AL L
Sbjct: 81 KELKRQFREREPKKHYQALVWGKL 104
>gi|384209503|ref|YP_005595223.1| Pseudouridine synthase, RsuA/RluD family [Brachyspira intermedia
PWS/A]
gi|343387153|gb|AEM22643.1| Pseudouridine synthase, RsuA/RluD family [Brachyspira intermedia
PWS/A]
Length = 217
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+II + + +DK AG V N + T+ L H+ID T G V+
Sbjct: 2 KIIYEDDYFIAIDKEAGIEVDNNLINAIKKEYTYIDN-------LYLVHRIDKFTSGIVI 54
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
LAR +E F + K + K+Y A+ +
Sbjct: 55 LARDEETKKYFEESFKNKTINKVYHAIVQGKVE 87
>gi|308070410|ref|YP_003872015.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
polymyxa E681]
gi|305859689|gb|ADM71477.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Paenibacillus polymyxa E681]
Length = 304
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 24/161 (14%)
Query: 185 RITHVDQIVEAGTYLRVHVHPKR----FPRCYDIDWNSRIIAVTESHVVLDKPAGTSV-- 238
R+ H +I G LR+ + P PR YD+ +++ + +V+ KPAG +V
Sbjct: 50 RLRHEKEIELTGDRLRLALFPVMNLGITPRWYDL----KVLYEDDFCLVVHKPAGVAVHP 105
Query: 239 -GGTTDN---IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
G D ++ + A++ G+ +R H++D T G V+ A+ + ++R
Sbjct: 106 DGAVQDGPLTLDHAVASYYE-VNGIHAAVRHVHRLDVDTTGPVLYAKNEFALLKLDEQMR 164
Query: 295 EKKVKKLYLALT---------TAPLPVGIMTHYMRPINIAP 326
K + + Y+AL T P+G H+ + I+P
Sbjct: 165 AKDIGRRYVALVRGKVPPSLRTLDWPIGKDRHHKQRRRISP 205
>gi|188534161|ref|YP_001907958.1| 23S rRNA pseudouridylate synthase C [Erwinia tasmaniensis Et1/99]
gi|188029203|emb|CAO97075.1| 23S rRNA pseudouridylate synthase [Erwinia tasmaniensis Et1/99]
Length = 320
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTE 274
II + +V++KP+GT+V G S +F L P L H++D T
Sbjct: 95 IIYEDDYLLVMNKPSGTAVHGG------SGLSFGVIEGLRALRPDARFLELVHRLDRDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+ + H ++REK ++K YLAL P
Sbjct: 149 GILLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWP 185
>gi|375006357|ref|YP_004975141.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427615|emb|CBS90560.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 235
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 217 NSRIIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
+R++ E V+DKPAG +V G TD++E F G P + H++D T
Sbjct: 11 RARVLHQDELCFVIDKPAGLAVHKAGRITDHLELYL-PFLGEPDG--EPPKLAHRLDRDT 67
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
GC++L RT F + V+K Y A+
Sbjct: 68 AGCLILGRTPWALKRFGQMFAAGHVEKTYWAVADG 102
>gi|312172072|emb|CBX80329.1| pseudouridylate synthase [Erwinia amylovora ATCC BAA-2158]
Length = 320
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
II + +V++KP+GT+V G + + E A L H++D T G
Sbjct: 95 IIYEDDYLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 150
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
+++A+ + H ++REK ++K YLAL P
Sbjct: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWP 185
>gi|254785800|ref|YP_003073229.1| ribosomal large subunit pseudouridine synthase C [Teredinibacter
turnerae T7901]
gi|237685873|gb|ACR13137.1| ribosomal large subunit pseudouridine synthase C [Teredinibacter
turnerae T7901]
Length = 314
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIE--ESCATFASRALGLTTPLRTTHQIDNCTEGC 276
++ T+ +V++KP+G +V GG+ N+ E+ ++ T L H++D T GC
Sbjct: 91 VLYETDQLLVVNKPSGLAVHGGSGVNLGLIEAIRQLKAK----DTALELVHRLDRETSGC 146
Query: 277 VVLARTQEYCSIFHRKIR-EKKVKKLYLALTTAPLP 311
+++AR + R EK+V K Y AL P
Sbjct: 147 ILIARKRSMLRYLQDLFRGEKQVDKRYQALVKGRWP 182
>gi|50311419|ref|XP_455734.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644870|emb|CAG98442.1| KLLA0F14553p [Kluyveromyces lactis]
Length = 377
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E +V++KP G V T + + +LG P+ +++D T G ++L
Sbjct: 113 IVHQDEQLLVINKPNGIPVHPTAYFYKNTLTELLKDSLGY--PVHPCYRLDKITSGLLIL 170
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + KIR++ +KK YLA P
Sbjct: 171 AKNPIDANRVQSKIRDRDMKKYYLARVKGKFP 202
>gi|429104090|ref|ZP_19166064.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
gi|426290739|emb|CCJ92177.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
Length = 331
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|49259509|pdb|1V9K|A Chain A, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
gi|49259510|pdb|1V9K|B Chain B, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
Length = 228
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 220 IIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
+I + H+ VL+KP+GT+V G + + E A L H++D T G
Sbjct: 3 VIXYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSG 58
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINI 324
+++A+ + H ++REK +K YLAL APL I+ R +
Sbjct: 59 VLLVAKKRSALRSLHEQLREKGXQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV-- 116
Query: 325 APRLVSEGK 333
R+ EGK
Sbjct: 117 --RVSQEGK 123
>gi|407938135|ref|YP_006853776.1| pseudouridine synthase [Acidovorax sp. KKS102]
gi|407895929|gb|AFU45138.1| pseudouridine synthase [Acidovorax sp. KKS102]
Length = 312
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ E + +DKPAG +V G + + +A + L H++D T G +++
Sbjct: 82 ILLEDEHLIAIDKPAGVAVHGGS-GVSFGVIEQLRQARPASKFLELVHRLDRETSGILLV 140
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + + + RE++ K YLAL T P
Sbjct: 141 AKKRSALTHLQDQFRERETGKTYLALVTGTWP 172
>gi|392978554|ref|YP_006477142.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392324487|gb|AFM59440.1| 23S rRNA pseudouridylate synthase C [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 315
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + S +I + ++ VL+KP+GT+V G + + E A L
Sbjct: 83 PKLQKVAALSDVILYEDDYILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++REK ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179
>gi|333893458|ref|YP_004467333.1| ribosomal large subunit pseudouridine synthase C [Alteromonas sp.
SN2]
gi|332993476|gb|AEF03531.1| ribosomal large subunit pseudouridine synthase C [Alteromonas sp.
SN2]
Length = 314
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 21/105 (20%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT----------T 266
S+I+ E +V++KP+G +V G + + GL LR
Sbjct: 92 ESQILFEDERIIVINKPSGIAVHGGS-----------GLSFGLIEGLRALRPDANFMELV 140
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T GC+++A+ + H ++R K+ K Y AL P
Sbjct: 141 HRLDRDTSGCILIAKKRSALRHMHEQLRTGKMDKRYQALVAGQWP 185
>gi|326795265|ref|YP_004313085.1| pseudouridine synthase [Marinomonas mediterranea MMB-1]
gi|326546029|gb|ADZ91249.1| pseudouridine synthase, RluA family [Marinomonas mediterranea
MMB-1]
Length = 324
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SRII + +V++KP+G +V G + + + L + H++D T G +
Sbjct: 100 SRIIYEDKGLLVVNKPSGLAVHGGS-GLSFGLVEVVRQMRPLEKFVELVHRLDRDTSGLI 158
Query: 278 VLARTQEYCSIFHRKIREKK-VKKLYLAL 305
++A+ + + H +REK V+K YLAL
Sbjct: 159 MIAKRRSVLKLLHEALREKSGVQKTYLAL 187
>gi|373949093|ref|ZP_09609054.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
gi|386325069|ref|YP_006021186.1| RluA family pseudouridine synthase [Shewanella baltica BA175]
gi|333819214|gb|AEG11880.1| pseudouridine synthase, RluA family [Shewanella baltica BA175]
gi|373885693|gb|EHQ14585.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
Length = 319
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 96 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 154 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 185
>gi|300716227|ref|YP_003741030.1| 23S rRNA pseudouridylate synthase [Erwinia billingiae Eb661]
gi|299062063|emb|CAX59179.1| 23S rRNA pseudouridylate synthase [Erwinia billingiae Eb661]
Length = 320
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 228 VVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+V++KP+GT+V G + + E A L H++D T G +++A+ +
Sbjct: 103 LVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGILLVAKKRS 158
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLP 311
H ++REK ++K YLAL P
Sbjct: 159 ALRSLHEQLREKGMQKDYLALVRGSWP 185
>gi|228957662|ref|ZP_04119409.1| Pseudouridine synthase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|423629749|ref|ZP_17605497.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
gi|228802004|gb|EEM48874.1| Pseudouridine synthase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|401266883|gb|EJR72952.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
Length = 307
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|429083131|ref|ZP_19146177.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter condimenti 1330]
gi|426547946|emb|CCJ72218.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter condimenti 1330]
Length = 317
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRQKGMQKDYLAL 179
>gi|392532574|ref|ZP_10279711.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas arctica A
37-1-2]
Length = 226
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 218 SRIIAVTESH---VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTE 274
S+I+ V +H +L+KPAG + + E+ L+ L H++D T
Sbjct: 6 SKILKVVYTHNDFYILEKPAGLNF-----HSEDGPGFVVLAEQQLSQKLYAVHRLDKVTS 60
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
G ++LAR + + F E + K YLA++ A
Sbjct: 61 GLIILARNKAAAASFTVMFTEHAIAKFYLAVSDA 94
>gi|218528371|ref|YP_002419187.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218520674|gb|ACK81259.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
CM4]
Length = 468
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 193 VEAGTYLRVHV----HPKRFPR-CYDIDWNSR-----IIAVTESHVVLDKPAGTSVGGTT 242
+E G+ +RV P PR ID ++ I+ ++L+KP G +V G +
Sbjct: 192 LEPGSSVRVPPLKLDQPTERPRSAAKIDGDAEFLRSLILYEDADMMILNKPFGLAVQGGS 251
Query: 243 DNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
+ + LT P R H++D T GC+++A+T+ S + R +
Sbjct: 252 GTVRHVDGLLEA----LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRSRAA 307
Query: 299 KKLYLAL 305
+K+Y AL
Sbjct: 308 RKIYWAL 314
>gi|251793109|ref|YP_003007835.1| 23S rRNA pseudouridylate synthase C [Aggregatibacter aphrophilus
NJ8700]
gi|422336644|ref|ZP_16417617.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
aphrophilus F0387]
gi|247534502|gb|ACS97748.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
aphrophilus NJ8700]
gi|353346089|gb|EHB90375.1| ribosomal large subunit pseudouridine synthase C [Aggregatibacter
aphrophilus F0387]
Length = 319
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + + A RAL L H++D T G +++A+ +
Sbjct: 105 LVLNKPSGIAVHGGSG--LDFGVIEALRALRPEARFLELVHRLDRDTSGILLVAKKRSAL 162
Query: 287 SIFHRKIREKKVKKLYLAL 305
H+++REK V+K YLAL
Sbjct: 163 RNLHKQLREKTVQKEYLAL 181
>gi|123441934|ref|YP_001005917.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|386307964|ref|YP_006004020.1| ribosomal large subunit pseudouridine synthase C [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418240466|ref|ZP_12867005.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|420258924|ref|ZP_14761646.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|433549991|ref|ZP_20506035.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
enterocolitica IP 10393]
gi|122088895|emb|CAL11702.1| ribosomal large subunit pseudouridine synthase C [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|318606162|emb|CBY27660.1| ribosomal large subunit pseudouridine synthase C; LSU Psi955,
Psi2504 and Psi2580 [Yersinia enterocolitica subsp.
palearctica Y11]
gi|351780097|gb|EHB22182.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|404513580|gb|EKA27393.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|431789126|emb|CCO69075.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
enterocolitica IP 10393]
Length = 319
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERMVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|77360755|ref|YP_340330.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas haloplanktis
TAC125]
gi|76875666|emb|CAI86887.1| 23S rRNA pseudouridylate synthase, in E. coli modifies positions
955, 2504, and 2580 in 23 S ribosomal RNA
[Pseudoalteromonas haloplanktis TAC125]
Length = 319
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
+V++KP+G +V G + + AL + P L H++D T GC+++A+ +
Sbjct: 103 IVINKPSGMAVHGGS-----GLSYGLIEALRVLRPEERSLELVHRLDRDTSGCLLIAKRR 157
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ H ++REK ++K Y AL
Sbjct: 158 SVLTALHEQLREKTMEKNYWALVDG 182
>gi|378773854|ref|YP_005176097.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
multocida 36950]
gi|425063690|ref|ZP_18466815.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida X73]
gi|356596402|gb|AET15128.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
multocida 36950]
gi|404382244|gb|EJZ78705.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida X73]
Length = 326
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 98 EKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 153
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 154 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 185
>gi|332162113|ref|YP_004298690.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325666343|gb|ADZ42987.1| 23S rRNA pseudouridylate synthase C [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 319
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERMVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|386340699|ref|YP_006037065.1| RluA family pseudouridine synthase [Shewanella baltica OS117]
gi|334863100|gb|AEH13571.1| pseudouridine synthase, RluA family [Shewanella baltica OS117]
Length = 319
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 96 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 154 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 185
>gi|262280824|ref|ZP_06058607.1| 23S rRNA pseudouridylate synthase [Acinetobacter calcoaceticus
RUH2202]
gi|262257724|gb|EEY76459.1| 23S rRNA pseudouridylate synthase [Acinetobacter calcoaceticus
RUH2202]
Length = 310
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT---------HQ 268
SRI+ E +V++KP+G +V G + A GL LR H+
Sbjct: 95 SRIVYEDEGLLVVNKPSGIAVHGGS-----------GMAYGLIEALRAATGKKYLELIHR 143
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
ID T G V++++ + + +RE K++K Y A+
Sbjct: 144 IDRDTSGLVMISKKRSTLKLLQDMLREHKIRKTYAAIVKG 183
>gi|261414686|ref|YP_003248369.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371142|gb|ACX73887.1| pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 386
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 220 IIAVTESHVVLDKPAG-TSVGGTTDNIEESCATFA---SRALGLTTPLRTTHQIDNCTEG 275
++ TE +V+++KP+G S G+ ES + R GL H++D T G
Sbjct: 145 LVVQTEDYVIVNKPSGLASQPGSGTRPGESLVEYLWEWGRNEGLDFKPTIAHRLDQETSG 204
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
++ A + F R IRE V K Y AL L
Sbjct: 205 LIIAALHGDTLRDFTRMIREHVVDKFYFALVKGNL 239
>gi|187923831|ref|YP_001895473.1| pseudouridine synthase [Burkholderia phytofirmans PsJN]
gi|187715025|gb|ACD16249.1| pseudouridine synthase, RluA family [Burkholderia phytofirmans
PsJN]
Length = 431
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQIDNCTE 274
I+ ++ VV++KPAG V N + + A GL H++D T
Sbjct: 145 IVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPR-AGIVHRLDKETS 203
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +V+ART E + R+++ + VK+ YLAL +P
Sbjct: 204 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMP 240
>gi|15602857|ref|NP_245929.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Pm70]
gi|421263734|ref|ZP_15714761.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425065858|ref|ZP_18468978.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida P1059]
gi|20139710|sp|Q9CM51.1|RLUC_PASMU RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|12721319|gb|AAK03076.1| RluC [Pasteurella multocida subsp. multocida str. Pm70]
gi|401689183|gb|EJS84664.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404383353|gb|EJZ79807.1| Ribosomal large subunit pseudouridine synthase [Pasteurella
multocida subsp. gallicida P1059]
Length = 326
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 98 EKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 153
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 154 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 185
>gi|240136939|ref|YP_002961408.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|418058116|ref|ZP_12696096.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
gi|240006905|gb|ACS38131.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|373568325|gb|EHP94274.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
Length = 463
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 193 VEAGTYLRVHV----HPKRFPR-CYDIDWNSR-----IIAVTESHVVLDKPAGTSVGGTT 242
+E G+ +RV P PR ID ++ I+ ++L+KP G +V G +
Sbjct: 187 LEPGSSVRVPPLKLDQPTERPRSAAKIDGDAEFLRSLILYEDADMMILNKPFGLAVQGGS 246
Query: 243 DNIEESCATFASRALGLTTPL----RTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKV 298
+ + LT P R H++D T GC+++A+T+ S + R +
Sbjct: 247 GTVRHVDGLLEA----LTGPDGQRPRLVHRLDKDTAGCLIVAKTRLAASTLAKSFRSRAA 302
Query: 299 KKLYLAL 305
+K+Y AL
Sbjct: 303 RKIYWAL 309
>gi|378579324|ref|ZP_09827992.1| Ribosomal large subunit pseudouridine synthase C [Pantoea stewartii
subsp. stewartii DC283]
gi|377818041|gb|EHU01129.1| Ribosomal large subunit pseudouridine synthase C [Pantoea stewartii
subsp. stewartii DC283]
Length = 318
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P+ + + I + H+ V++KP+GT+V G + + E A L
Sbjct: 83 PKLAKVASLANAILFEDDHLLVMNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T G +++A+ + H ++REK ++K YLAL P
Sbjct: 139 LVHRLDRDTSGILLVAKKRSALRSLHEQLREKGMQKDYLALVQGNWP 185
>gi|359436650|ref|ZP_09226744.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20311]
gi|358028695|dbj|GAA62993.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20311]
Length = 319
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
+V++KP+G +V G + + AL + P L H++D T GC+++A+ +
Sbjct: 103 IVINKPSGMAVHGGS-----GLSYGLIEALRVLRPEERSLELVHRLDRDTSGCLLIAKRR 157
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ H ++REK ++K Y AL
Sbjct: 158 SVLTALHEQLREKTMEKNYWALVEG 182
>gi|350569663|ref|ZP_08938059.1| RluA family RNA pseudouridine synthase [Propionibacterium avidum
ATCC 25577]
gi|348660481|gb|EGY77191.1| RluA family RNA pseudouridine synthase [Propionibacterium avidum
ATCC 25577]
Length = 306
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNC 272
RI+ VV+DKPAG S+G ++ E + A FA G ++D
Sbjct: 81 RIVHDDSDIVVVDKPAGVAAHPSLGWDGPSVVEHLAAAGFAISTSGAPERQGIVQRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T G +V+A+++ ++ + R++ V K+YLAL
Sbjct: 141 TSGLMVVAKSEHAYTLLKQAFRDRTVDKVYLALVQG 176
>gi|268597722|ref|ZP_06131889.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae FA19]
gi|268551510|gb|EEZ46529.1| ribosomal large subunit pseudouridine synthase C [Neisseria
gonorrhoeae FA19]
Length = 330
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++ ++ +V++KP+G +V G + + RA L H++D T G +++
Sbjct: 96 VVYEDDALLVVNKPSGVAVHGGS-GVGFGVIEQLRRARPEAKYLELVHRLDKDTSGLLMV 154
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
A+ + H IR KK+YLAL LP
Sbjct: 155 AKKRSALVKLHEAIRNDHPKKIYLALGVGKLP 186
>gi|378708113|ref|YP_005273007.1| RluA family pseudouridine synthase [Shewanella baltica OS678]
gi|418026179|ref|ZP_12665151.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
gi|315267102|gb|ADT93955.1| pseudouridine synthase, RluA family [Shewanella baltica OS678]
gi|353534500|gb|EHC04070.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
Length = 319
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 96 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 154 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 185
>gi|148240684|ref|YP_001226071.1| pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
7803]
gi|147849223|emb|CAK24774.1| Pseudouridylate synthase, 23S RNA-specific [Synechococcus sp. WH
7803]
Length = 333
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSV--------GGTTDNIEESCATFASRALGLT 260
P D+D ++ E +V++KPAG +V G + + C G++
Sbjct: 98 PEAMDLD----VLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLP----GIS 149
Query: 261 TPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVG 313
LR H++D T GC+V+A++QE +I+++ + YLA+ +P G
Sbjct: 150 GKLRPGIVHRLDKDTTGCIVIAKSQEALVKLQVQIQKRIASREYLAVVHG-VPAG 203
>gi|254245933|ref|ZP_04939254.1| Ribosomal large subunit pseudouridine synthase C [Burkholderia
cenocepacia PC184]
gi|124870709|gb|EAY62425.1| Ribosomal large subunit pseudouridine synthase C [Burkholderia
cenocepacia PC184]
Length = 341
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ ++ +V+DKPAG +V G + + +A L H++D T G
Sbjct: 106 NFDVLYEDDAMLVIDKPAGVAVHGGS-GVAFGVIEQMRQARPRAKFLELVHRLDRETSGI 164
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA 304
++LA+ + H +IRE ++ K Y A
Sbjct: 165 LMLAKKRTALVGLHEQIRENRMDKRYFA 192
>gi|238783756|ref|ZP_04627775.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
bercovieri ATCC 43970]
gi|238715307|gb|EEQ07300.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
bercovieri ATCC 43970]
Length = 319
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERVVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|429095682|ref|ZP_19157788.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter dublinensis 582]
gi|426282022|emb|CCJ83901.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter dublinensis 582]
Length = 317
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 83 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 138
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 179
>gi|397688362|ref|YP_006525681.1| 23S RNA-specific pseudouridylate synthase [Pseudomonas stutzeri DSM
10701]
gi|395809918|gb|AFN79323.1| pseudouridylate synthase, 23S RNA-specific [Pseudomonas stutzeri
DSM 10701]
Length = 294
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 199 LRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALG 258
LR+H + P + + RI+ + E +V DKP SV + +EE+ + LG
Sbjct: 64 LRIHYF-REVPNETPVPFQERILHLDEHLLVADKPHFLSVMPAGEYVEETLLARLCKWLG 122
Query: 259 LTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHY 318
L H+ID T G V+ + + + RE+ + K Y A+ A + H
Sbjct: 123 -NPDLVPIHRIDRLTAGLVLFSVNPQSRGAYQALFRERAIHKRYEAICPA------LPHL 175
Query: 319 MRPINIAPRLVSEGKTIF 336
P+ R+V G+ F
Sbjct: 176 QFPLRRQLRMVP-GEPFF 192
>gi|417853665|ref|ZP_12499021.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338219152|gb|EGP04848.1| 23S rRNA pseudouridylate synthase C [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 326
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCT 273
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 98 EKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDT 153
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 154 SGILLVAKKRSALRSLHEQLREKTVQKDYLAL 185
>gi|91783470|ref|YP_558676.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
gi|91687424|gb|ABE30624.1| ribosomal large subunit pseudouridine synthase D [Burkholderia
xenovorans LB400]
Length = 438
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQIDNCTE 274
II ++ VV++KPAG V N + + A GL H++D T
Sbjct: 145 IIYEDDTLVVINKPAGMVVHPAAGNWSGTLLNGLLYRYGDAAAGLPR-AGIVHRLDKETS 203
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +V+ART E + R+++ + VK+ YLAL +P
Sbjct: 204 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMP 240
>gi|238789119|ref|ZP_04632908.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
frederiksenii ATCC 33641]
gi|238722883|gb|EEQ14534.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
frederiksenii ATCC 33641]
Length = 319
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERMVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|402826617|ref|ZP_10875794.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
gi|402259851|gb|EJU10037.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
Length = 426
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 189 VDQIVEAGTYLRV-----------HVHPKRFPRCYDIDW-NSRIIAVTESHVVLDKPAGT 236
VD +EAG LRV P+R +I+ +S ++ + +VL+KP G
Sbjct: 55 VDTRLEAGQTLRVPPGGEQKASASGERPRRELTEAEIELADSMVLTQDRAAIVLNKPPGL 114
Query: 237 SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296
+ G + E + P R H++D T G +++ART + F ++ +
Sbjct: 115 ATQGGSGMKEHVDGLLDAYVEKGPRP-RLVHRLDKDTSGVLLIARTPGSAAFFSKRFSGR 173
Query: 297 KVKKLYLAL 305
KK+Y AL
Sbjct: 174 TAKKIYWAL 182
>gi|392555218|ref|ZP_10302355.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas undina NCIMB
2128]
Length = 319
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP----LRTTHQIDNCTEGCVVLARTQ 283
+V++KP+G +V G + + AL + P L H++D T GC+++A+ +
Sbjct: 103 IVINKPSGMAVHGGS-----GLSYGLIEALRVLRPEERSLELVHRLDRDTSGCLLIAKRR 157
Query: 284 EYCSIFHRKIREKKVKKLYLALTTA 308
+ H ++REK ++K Y AL
Sbjct: 158 SVLTALHEQLREKTMEKNYWALVEG 182
>gi|375136929|ref|YP_004997579.1| 23S rRNA pseudouridylate synthase [Acinetobacter calcoaceticus
PHEA-2]
gi|325124374|gb|ADY83897.1| 23S rRNA pseudouridylate synthase [Acinetobacter calcoaceticus
PHEA-2]
Length = 233
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 20/104 (19%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT---------HQ 268
SR++ E +V++KP+G +V G + A GL LR H+
Sbjct: 95 SRVVYEDEGLLVINKPSGIAVHGGS-----------GVAYGLIEALRAATGKKYLELIHR 143
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPV 312
ID T G V++++ + + +RE K++K Y A+ + +
Sbjct: 144 IDRDTSGLVMISKKRSTLKLLQDMLREHKIRKTYAAIVKGQVSL 187
>gi|78048898|ref|YP_365073.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325929044|ref|ZP_08190199.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
perforans 91-118]
gi|346726005|ref|YP_004852674.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citrumelo F1]
gi|78037328|emb|CAJ25073.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325540577|gb|EGD12164.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
perforans 91-118]
gi|346650752|gb|AEO43376.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 331
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 225 ESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
E +V+DKPAG V G D + F AL H++D T G +V+AR
Sbjct: 97 EQVLVIDKPAGLVVHPGAGNPDQTLVNALLFRDPALASVPRAGVVHRLDKDTSGVMVVAR 156
Query: 282 TQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
T + + ++ ++V + YLA+ L G + PI+ PR
Sbjct: 157 TVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTVNA--PIDRHPR 200
>gi|421187468|ref|ZP_15644827.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB419]
gi|421190491|ref|ZP_15647792.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB422]
gi|421193274|ref|ZP_15650523.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB553]
gi|421195673|ref|ZP_15652877.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB568]
gi|421196393|ref|ZP_15653582.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB576]
gi|399968676|gb|EJO03108.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB419]
gi|399969926|gb|EJO04240.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB422]
gi|399972478|gb|EJO06678.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB553]
gi|399975314|gb|EJO09371.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB568]
gi|399977593|gb|EJO11573.1| pseudouridylate synthase, 23S RNA-specific [Oenococcus oeni
AWRIB576]
Length = 277
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRAL----GLTTPLRT--THQ 268
D RI++ E ++++DKPAG + + N ++ + L + P H+
Sbjct: 56 DRRLRILSEKEDYLLVDKPAGMKMHPHSPNETDTLLNYVEAQLKGHLSRSCPAHAFMVHR 115
Query: 269 IDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
ID T G V++A+ I + + +K++K+ YLA + L
Sbjct: 116 IDRDTSGVVIIAKNPLAVGILDQLLAKKRIKRTYLAWVSGNL 157
>gi|393722169|ref|ZP_10342096.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26605]
Length = 374
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KP G + G T IE + L + H++D T G +V+ART
Sbjct: 116 IVLNKPPGLATQGGTKTIEHVDGLLDALQDDLEGRPKLVHRLDKDTSGALVIARTARAAG 175
Query: 288 IFHRKIREKKVKKLYLALT---------TAPLPVG 313
+ + +K Y AL T LP+G
Sbjct: 176 FLSKSFSSRTARKTYWALVVGVPSIEDGTIELPIG 210
>gi|416892566|ref|ZP_11923890.1| 23S rRNA pseudouridylate synthase C [Aggregatibacter aphrophilus
ATCC 33389]
gi|347814264|gb|EGY30913.1| 23S rRNA pseudouridylate synthase C [Aggregatibacter aphrophilus
ATCC 33389]
Length = 319
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + + A RAL L H++D T G +++A+ +
Sbjct: 105 LVLNKPSGIAVHGGSG--LDFGVIEALRALRPEARFLELVHRLDRDTSGILLVAKKRSAL 162
Query: 287 SIFHRKIREKKVKKLYLAL 305
H+++REK V+K YLAL
Sbjct: 163 RNLHKQLREKTVQKEYLAL 181
>gi|260597456|ref|YP_003210027.1| 23S rRNA pseudouridylate synthase C [Cronobacter turicensis z3032]
gi|260216633|emb|CBA29938.1| Ribosomal large subunit pseudouridine synthase C [Cronobacter
turicensis z3032]
Length = 333
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 99 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 154
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 155 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 195
>gi|429090938|ref|ZP_19153640.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter dublinensis 1210]
gi|426744593|emb|CCJ79753.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter dublinensis 1210]
Length = 331
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 209 PRCYDIDWNSRIIAVTESHV-VLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLR 264
P + S +I + H+ VL+KP+GT+V G + + E A L
Sbjct: 97 PHLQKVAALSDVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLE 152
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
H++D T G +++A+ + H ++R+K ++K YLAL
Sbjct: 153 LVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLAL 193
>gi|374314161|ref|YP_005060590.1| ribosomal large subunit pseudouridine synthase C [Serratia
symbiotica str. 'Cinara cedri']
gi|363988387|gb|AEW44578.1| ribosomal large subunit pseudouridine synthase C [Serratia
symbiotica str. 'Cinara cedri']
Length = 319
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 221 IAVTESHV-VLDKPAGTSV-GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
I ++HV +++KP+GT+V GG+ N R T L H++D T G ++
Sbjct: 95 ILYEDNHVLIINKPSGTAVHGGSGLNFGVIEGLRTKRPD--THFLELVHRLDRDTSGVLM 152
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
LA+ + H ++R K ++K YLAL P
Sbjct: 153 LAKQRSALRSLHEQLRMKTIQKDYLALVRGQWP 185
>gi|375145352|ref|YP_005007793.1| pseudouridine synthase [Niastella koreensis GR20-10]
gi|361059398|gb|AEV98389.1| pseudouridine synthase [Niastella koreensis GR20-10]
Length = 562
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 208 FPRCYDIDWNSRIIAVTESHVVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTT 266
F R D II +S VV++KPAG SV G I+ES T G PL
Sbjct: 350 FLRIPDEKRELEIIYEDDSLVVVNKPAGLLSVPGV--EIKESVYTRLKDVFGGIEPL-IV 406
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
H++D T G +V+A+T R+ + V+K Y AL +
Sbjct: 407 HRLDMDTSGLLVVAKTPHAHKHIQRQFMQGTVRKRYRALLS 447
>gi|365090413|ref|ZP_09328461.1| pseudouridine synthase [Acidovorax sp. NO-1]
gi|363416512|gb|EHL23622.1| pseudouridine synthase [Acidovorax sp. NO-1]
Length = 304
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDN----IEE-SCATFASRALGLTTPLRTTHQIDNCTE 274
++ E + +DKPAG +V G + IE+ A ASR L L H++D T
Sbjct: 67 VLLEDEHLIAIDKPAGVAVHGGSGVSFGVIEQLRQARPASRFLELV------HRLDRETS 120
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+ + + + RE++ K YLAL T P
Sbjct: 121 GILLVAKKRSALTHLQDQFRERETGKTYLALVTGTWP 157
>gi|148554296|ref|YP_001261878.1| pseudouridine synthase [Sphingomonas wittichii RW1]
gi|148499486|gb|ABQ67740.1| pseudouridine synthase [Sphingomonas wittichii RW1]
Length = 250
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ I+ + +V+DKP+G V D S + G H++D T GC
Sbjct: 34 DEHILFIDGEAMVIDKPSGLPVDPPRDGSISLENHLQSLSFGFKRWPSAVHRLDRDTSGC 93
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
++LAR + + E KV+K YLA+
Sbjct: 94 LLLARNPKAHKRYALAFEEGKVEKTYLAI 122
>gi|414167314|ref|ZP_11423543.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410891131|gb|EKS38929.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 415
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 220 IIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ E +VL+KPAG +V G T ++++ R P R H++D T GC
Sbjct: 178 ILFEDEDLMVLNKPAGLAVQGGSGMTKHVDQMLEVM--RDAKGQKP-RLVHRLDRETSGC 234
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+T+ S R + +K+Y AL
Sbjct: 235 LLIAKTRFAASALTGSFRHRSARKIYWALVAG 266
>gi|386833839|ref|YP_006239153.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
multocida subsp. multocida str. 3480]
gi|385200539|gb|AFI45394.1| ribosomal large subunit pseudouridine synthase C [Pasteurella
multocida subsp. multocida str. 3480]
Length = 326
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTE 274
+I+ E +VL+KP+G +V G + + E+ T A L H++D T
Sbjct: 99 KQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDA----RFLELVHRLDRDTS 154
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
G +++A+ + H ++REK V+K YLAL
Sbjct: 155 GILLVAKKRSALRSLHEQLREKTVQKNYLAL 185
>gi|315645744|ref|ZP_07898868.1| pseudouridine synthase, RluA family protein [Paenibacillus vortex
V453]
gi|315279222|gb|EFU42532.1| pseudouridine synthase, RluA family protein [Paenibacillus vortex
V453]
Length = 300
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 181 QKTFR-ITHVDQIVEAGTYLRVHVHPKRF----PRCYDIDWNSRIIAVTESHVVLDKPAG 235
+K +R + H I G LR+ + P R PR ++ ++ E +V++KPAG
Sbjct: 44 EKLYRKLRHEQGIQWRGDQLRLVLFPYRDYGIKPRWQEL----HVLHEDEFCLVVNKPAG 99
Query: 236 TSVGGTTDNIEESCATFAS---RALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSI-FHR 291
+V ++ E + + A G+ T +R H++D T G V+ A+ EY +
Sbjct: 100 MAVHPDQESEETTLNHVVAAYYEAEGIHTAVRHIHRLDKDTTGPVLYAKN-EYAQLKLDE 158
Query: 292 KIREKKVKKLYLALTTA 308
+REKK+ ++Y A+
Sbjct: 159 AMREKKIVRIYAAIVQG 175
>gi|238762184|ref|ZP_04623156.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
kristensenii ATCC 33638]
gi|238699531|gb|EEP92276.1| Ribosomal large subunit pseudouridine synthase C [Yersinia
kristensenii ATCC 33638]
Length = 319
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQSHCKAVQAPLLKNIMQSGERMVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|209522216|ref|ZP_03270853.1| pseudouridine synthase, RluA family [Burkholderia sp. H160]
gi|209497345|gb|EDZ97563.1| pseudouridine synthase, RluA family [Burkholderia sp. H160]
Length = 419
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQIDNCTE 274
I+ ++ VV++KPAG V N + + A GL H++D T
Sbjct: 147 IVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGEAAAGLPR-AGIVHRLDKETS 205
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +V+ART E + R+++ + VK+ YLAL +P
Sbjct: 206 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMP 242
>gi|428168065|gb|EKX37015.1| hypothetical protein GUITHDRAFT_145364 [Guillardia theta CCMP2712]
Length = 330
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 263 LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322
+R ++D T G +VL + E+ S F+R +RE + Y AL P+G + HYM P
Sbjct: 66 VRIHSRLDVPTHGLLVLGKRSEFVSRFNRLLREHQE---YKALVLGHPPLGELVHYMEPS 122
Query: 323 NIAPRLVS 330
+P+++
Sbjct: 123 KRSPKVLD 130
>gi|397171176|ref|ZP_10494585.1| pseudouridine synthase [Alishewanella aestuarii B11]
gi|396087075|gb|EJI84676.1| pseudouridine synthase [Alishewanella aestuarii B11]
Length = 276
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSR------IIAVTES 226
KG A+ R+ +++AG L +H YD + SR ++A ++
Sbjct: 37 KGAVQLIAKPVKRLRRAQFMLKAGDRLALH---------YDSEILSRDCAAAQLLADEKA 87
Query: 227 HVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+ V KPAG G S FA + P+ H++D G V+LA ++
Sbjct: 88 YTVWFKPAGMLSQGNEWGDHLSLLRFAEQHFTPARPVFLLHRLDREASGLVLLAHNKQAA 147
Query: 287 SIFHRKIREKKVKKLYLALTTAPLPVGIMTH 317
+ + I E+ + K Y LP +++
Sbjct: 148 AALSKLIAERAIIKKYRVRVKGALPADVLSQ 178
>gi|377810170|ref|YP_005005391.1| RNA pseudouridylate synthase family protein [Pediococcus claussenii
ATCC BAA-344]
gi|361056911|gb|AEV95715.1| RNA pseudouridylate synthase family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 293
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
II +V++KPAG S F + L P H++D T G +++
Sbjct: 87 IIFEMNDFLVVNKPAGYKTHSNQPGELNSIMNFLTSYLDPVIPY-NVHRLDQATSGALLV 145
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALT---------TAPLPVGI 314
A+ I +++I +K +K+ YLAL T P+GI
Sbjct: 146 AKNPVVLPILNQQISKKIIKRSYLALVEGGLTQTSGTIDFPIGI 189
>gi|339624323|ref|ZP_08660112.1| ribosomal large subunit pseudouridine synthase A [Fructobacillus
fructosus KCTC 3544]
Length = 300
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATF------ASRALGLTTPLRT--THQIDN 271
I+ E +V++K G + + E++ F AS P + TH++D
Sbjct: 87 IVFENEDLLVVNKAEGMKMHPHSPTEEDTLLNFVQAYLDASHGTSANQPAKAFMTHRLDR 146
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAP 326
T G V++A+ I +R+I++K KK Y+A T + T + +PI + P
Sbjct: 147 ATSGLVLIAKNPLAVPILNRQIKDKVAKKTYIAKVTGFFKTKVGT-FTQPIGLHP 200
>gi|89053115|ref|YP_508566.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
gi|88862664|gb|ABD53541.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
Length = 354
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ ++KPAG G T + GL R H++D T G +++ART+
Sbjct: 103 DDHIIAINKPAGLPTQGGTGQSRHVDGLAEALKFGLEDKPRLVHRLDKDTSGVLLMARTR 162
Query: 284 EYCSIFHRKIREKKVKKLYL-ALTTAPLP 311
R + +K+Y A+ +PLP
Sbjct: 163 MGAKALTDAFRLRSTRKIYWAAVAGSPLP 191
>gi|117921007|ref|YP_870199.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
gi|117613339|gb|ABK48793.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
Length = 329
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 106 DRILHEDNHLIVLNKPAGIAVHGGSG--VDYGVIEALRSLRPQQKFLELVHRLDKDTSGV 163
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 164 LLVAKKRSALKHMHDQLRYKKMQKDYLALVKG 195
>gi|402573208|ref|YP_006622551.1| RluA family pseudouridine synthase [Desulfosporosinus meridiei DSM
13257]
gi|402254405|gb|AFQ44680.1| pseudouridine synthase, RluA family [Desulfosporosinus meridiei DSM
13257]
Length = 300
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KP+G V G T+ + F + G+ +R H++D T GC+V A+
Sbjct: 90 IVLNKPSGLLVHPTGQTSSGTLSNYLAFYFQQQGVICTIRPIHRLDRETSGCIVFAKDSR 149
Query: 285 YCSIFHRKIREKKVKKLYLAL 305
+I +++ +K+ Y AL
Sbjct: 150 TQTILETLLKDGSLKRTYRAL 170
>gi|238749676|ref|ZP_04611181.1| Ribosomal large subunit pseudouridine synthase C [Yersinia rohdei
ATCC 43380]
gi|238712331|gb|EEQ04544.1| Ribosomal large subunit pseudouridine synthase C [Yersinia rohdei
ATCC 43380]
Length = 319
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTEGCVVLART 282
+VL+KP+GT+V G S +F AL P L H++D T G +++A+
Sbjct: 103 LVLNKPSGTAVHGG------SGLSFGVIEALRALRPEARFLELVHRLDRDTSGVLLVAKK 156
Query: 283 QEYCSIFHRKIREKKVKKLYLAL-----------TTAPLPVGIMTHYMRPINIAPRLVSE 331
+ H ++R K ++K YLAL APL IM R + ++ SE
Sbjct: 157 RSALRSLHEQLRLKGMQKDYLALVRGQWQPHCKAVQAPLLKNIMQSGERMVKVS----SE 212
Query: 332 GK 333
GK
Sbjct: 213 GK 214
>gi|206559376|ref|YP_002230137.1| ribosomal large subunit pseudouridine synthase C 2 [Burkholderia
cenocepacia J2315]
gi|206561222|ref|YP_002231987.1| ribosomal large subunit pseudouridine synthase C 1 [Burkholderia
cenocepacia J2315]
gi|444363010|ref|ZP_21163491.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia BC7]
gi|444372030|ref|ZP_21171530.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
K56-2Valvano]
gi|198035414|emb|CAR51290.1| ribosomal large subunit pseudouridine synthase C 2 [Burkholderia
cenocepacia J2315]
gi|198037264|emb|CAR53186.1| ribosomal large subunit pseudouridine synthase C 1 [Burkholderia
cenocepacia J2315]
gi|443594261|gb|ELT62928.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia
K56-2Valvano]
gi|443595781|gb|ELT64336.1| pseudouridine synthase, RluA family [Burkholderia cenocepacia BC7]
Length = 334
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ ++ +V+DKPAG +V G + + +A L H++D T G
Sbjct: 99 NFDVLYEDDAMLVIDKPAGVAVHGGS-GVAFGVIEQMRQARPRAKFLELVHRLDRETSGI 157
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA 304
++LA+ + H +IRE ++ K Y A
Sbjct: 158 LMLAKKRTALVGLHEQIRENRMDKRYFA 185
>gi|194761918|ref|XP_001963138.1| GF15796 [Drosophila ananassae]
gi|190616835|gb|EDV32359.1| GF15796 [Drosophila ananassae]
Length = 524
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESH------------------VVLDKPA 234
+EAG ++ V+ ++ P+ Y I N + V H VV++KPA
Sbjct: 179 LEAG---KLTVNNEKVPKDYKIKHNDLLANVVHRHEVPVTSQPITIVYMDKDIVVVNKPA 235
Query: 235 GTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIR 294
V + ++ L LRT H++D T G ++ RT + ++IR
Sbjct: 236 SIPVHPCGRYRHNTVVFILAKEHNLKN-LRTIHRLDRLTSGLLLFGRTSDKARELEQQIR 294
Query: 295 EKKVKKLYLALTTAPLPVGIM 315
++V+K Y+ P GI+
Sbjct: 295 NRQVQKEYVCRVEGRFPDGII 315
>gi|444379435|ref|ZP_21178615.1| Ribosomal large subunit pseudouridine synthase C [Enterovibrio sp.
AK16]
gi|443676439|gb|ELT83140.1| Ribosomal large subunit pseudouridine synthase C [Enterovibrio sp.
AK16]
Length = 318
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 220 IIAVTESHVVLDKPAGTSV-GGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCV 277
+I + +VL+KP+GT+V GG+ + A A RAL L H+ID T G +
Sbjct: 96 VIYEDDHMLVLNKPSGTAVHGGSGLHF---GAIEAMRALRPDARFLELVHRIDRDTSGIL 152
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
++A+ + + REK V+K Y AL
Sbjct: 153 LIAKKRSALRHLQAQFREKTVQKYYFALAMG 183
>gi|328870665|gb|EGG19038.1| hypothetical protein DFA_02281 [Dictyostelium fasciculatum]
Length = 579
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 187 THVDQIVEAGTYLRVHVHPKRFPRCYDID---WNSRIIAVTESHVVLDKPAGTSVGGTTD 243
T D ++++G + VH ++ID +IA T ++V+DKP V
Sbjct: 188 TTADYVIKSGDTFKHIVHR------HEIDVLALEPTLIAETLDYLVVDKPPSIPVHPAGP 241
Query: 244 NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYL 303
S +R G T L H++D T G VVLA+ + ++ + K+YL
Sbjct: 242 YRHNSLTFLLARQFGYTN-LLACHRLDRLTSGVVVLAKNSTASGRLGKVFKKGDIDKIYL 300
Query: 304 ALTTAPLPVGIMTHYMRPINIAPRLVSEG 332
A P T +PI + + G
Sbjct: 301 AKVKGMFPYLEETMVAKPIMVLNEITGLG 329
>gi|149911608|ref|ZP_01900220.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
gi|149805329|gb|EDM65342.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
Length = 317
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT----------T 266
S+II + +V++KP+G +V G + + GL LR
Sbjct: 93 ESQIIYEDDYLIVINKPSGMAVHGGS-----------GLSFGLIEGLRAIRPDSRFLELV 141
Query: 267 HQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T GC+++A+ + H ++R K ++K Y AL P
Sbjct: 142 HRLDRDTSGCLLVAKKRSTLKALHEQLRLKTMRKDYQALVAGAWP 186
>gi|88809823|ref|ZP_01125329.1| Pseudouridine synthase, RluD [Synechococcus sp. WH 7805]
gi|88786207|gb|EAR17368.1| Pseudouridine synthase, RluD [Synechococcus sp. WH 7805]
Length = 327
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 209 PRCYDIDWNSRIIAVTESHVVLDKPAGTSV--------GGTTDNIEESCATFASRALGLT 260
P D+D ++ E +V++KPAG +V G + + C G++
Sbjct: 95 PEAMDLD----VLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLP----GIS 146
Query: 261 TPLR--TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
LR H++D T GC+V+A++QE +I+++ + YLA+
Sbjct: 147 GKLRPGIVHRLDKDTTGCIVIAKSQEALVKLQVQIQKRIASREYLAV 193
>gi|407790939|ref|ZP_11138029.1| 23S rRNA pseudouridylate synthase C [Gallaecimonas xiamenensis
3-C-1]
gi|407202223|gb|EKE72217.1| 23S rRNA pseudouridylate synthase C [Gallaecimonas xiamenensis
3-C-1]
Length = 319
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT----------THQIDNCTEGCV 277
+V++KPAG +V G + + GL LR H++D T GC+
Sbjct: 104 MVVNKPAGLAVHGGS-----------GLSFGLIEGLRALRPDARFLELVHRLDRDTSGCI 152
Query: 278 VLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
++A+ + H +REK ++K YL L P
Sbjct: 153 LIAKKRSALRGLHEALREKTMQKDYLCLVRGDWP 186
>gi|195434114|ref|XP_002065048.1| GK15253 [Drosophila willistoni]
gi|194161133|gb|EDW76034.1| GK15253 [Drosophila willistoni]
Length = 761
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
I+ + E VV++KPA V + ++ L LRT H++D T G ++
Sbjct: 397 IVHMDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKEFNLKN-LRTIHRLDRLTSGLLLF 455
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
R+ + ++IR ++V+K Y+ P GI+
Sbjct: 456 GRSPKKARQMEQQIRNRQVEKEYICRVEGIFPDGIV 491
>gi|107022188|ref|YP_620515.1| pseudouridine synthase RluD [Burkholderia cenocepacia AU 1054]
gi|116689134|ref|YP_834757.1| RluA family pseudouridine synthase [Burkholderia cenocepacia
HI2424]
gi|105892377|gb|ABF75542.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
cenocepacia AU 1054]
gi|116647223|gb|ABK07864.1| ribosomal large subunit pseudouridine synthase C [Burkholderia
cenocepacia HI2424]
Length = 334
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
N ++ ++ +V+DKPAG +V G + + +A L H++D T G
Sbjct: 99 NFDVLYEDDAMLVIDKPAGVAVHGGS-GVAFGVIEQMRQARPRAKFLELVHRLDRETSGI 157
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLA 304
++LA+ + H +IRE ++ K Y A
Sbjct: 158 LMLAKKRTALVGLHEQIRENRMDKRYFA 185
>gi|238018444|ref|ZP_04598870.1| hypothetical protein VEIDISOL_00271 [Veillonella dispar ATCC 17748]
gi|237864915|gb|EEP66205.1| hypothetical protein VEIDISOL_00271 [Veillonella dispar ATCC 17748]
Length = 334
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 48/91 (52%)
Query: 214 IDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCT 273
I+ + I+ + +++DKPAG +V + + + G+ +R +++D T
Sbjct: 87 IEMDLHILYEDDDLLIVDKPAGVTVNSKDQVSLANGVAYYFKENGIKRKVRFLNRLDRDT 146
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
GC+V+A++ S++ +++ + +K Y+A
Sbjct: 147 TGCIVIAKSGLAQSLYQQQMDDNTFEKWYMA 177
>gi|120599252|ref|YP_963826.1| RluA family pseudouridine synthase [Shewanella sp. W3-18-1]
gi|146292674|ref|YP_001183098.1| RluA family pseudouridine synthase [Shewanella putrefaciens CN-32]
gi|120559345|gb|ABM25272.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
W3-18-1]
gi|145564364|gb|ABP75299.1| ribosomal large subunit pseudouridine synthase C [Shewanella
putrefaciens CN-32]
Length = 330
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 107 DRILHEDNHLIVLNKPAGIAVHGGSG--VDYGVIEALRSLRPQQKFLELVHRLDKDTSGV 164
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 165 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 196
>gi|297830600|ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 228 VVLDKPAGTSVGG------TTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
+VL+KP G +V G + D + +C TF + R H++D G +VLAR
Sbjct: 193 IVLNKPHGLAVQGGSGIKTSIDELAATCLTFDK-----SESPRLVHRLDRDCSGLLVLAR 247
Query: 282 TQEYCSIFHRKIREK 296
TQ ++ H REK
Sbjct: 248 TQTAATVLHSIFREK 262
>gi|386313353|ref|YP_006009518.1| RluA family pseudouridine synthase [Shewanella putrefaciens 200]
gi|319425978|gb|ADV54052.1| pseudouridine synthase, RluA family [Shewanella putrefaciens 200]
Length = 330
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 107 DRILHEDNHLIVLNKPAGIAVHGGSG--VDYGVIEALRSLRPQQKFLELVHRLDKDTSGV 164
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 165 LLVAKKRSALKHLHDQLRYKKMQKDYLALVKG 196
>gi|152996325|ref|YP_001341160.1| RluA family pseudouridine synthase [Marinomonas sp. MWYL1]
gi|150837249|gb|ABR71225.1| pseudouridine synthase, RluA family [Marinomonas sp. MWYL1]
Length = 323
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCV 277
SRI+ + +V++KP+G +V G + + + L + H++D T G +
Sbjct: 98 SRIVYEDKGLIVINKPSGLAVHGGS-GLSFGLVEVIRQMRPLEKFIELVHRLDRDTSGLI 156
Query: 278 VLARTQEYCSIFHRKIREKK-VKKLYLALTTAPLP 311
++A+ + H +REK+ V+K YLAL P
Sbjct: 157 MVAKKRAVLKELHTALREKEGVQKTYLALVYGSWP 191
>gi|91789509|ref|YP_550461.1| pseudouridine synthase RluD [Polaromonas sp. JS666]
gi|91698734|gb|ABE45563.1| Pseudouridine synthase, RluD [Polaromonas sp. JS666]
Length = 378
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 21/111 (18%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP-- 262
+ FP ++ D+ ++A+ DKPAG +V G S +F L + P
Sbjct: 124 REFPVLFEDDF---LLAI-------DKPAGVAVHGG------SGVSFGVIEQLRMARPQA 167
Query: 263 --LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
L H++D T G +++A+ + + + RE++ K+YLAL + P
Sbjct: 168 DFLELVHRLDRETSGILLIAKRRMALKLLQEQFRERETDKVYLALVSGNWP 218
>gi|423414917|ref|ZP_17392037.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|423429301|ref|ZP_17406305.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
gi|401097837|gb|EJQ05859.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|401121607|gb|EJQ29396.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
Length = 307
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 233 PAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRK 292
PA GT N+ F + GL T +R H++D T G VV A+ + +I R
Sbjct: 107 PAEKGGTGTLANL----VAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRL 162
Query: 293 IREKKVKKLYLALTTAPL 310
+ E+K+K+ Y AL +
Sbjct: 163 LMERKIKRTYAALVEGKV 180
>gi|383768639|ref|YP_005447702.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
gi|381356760|dbj|BAL73590.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
Length = 233
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNC 272
+R++ +V+DKP+G V GG N+E A+F + GL P H++D
Sbjct: 14 ARVLHRDGLMLVIDKPSGLPVHRGPKGGA--NLE---ASFGALCFGLPRPPVLAHRLDKD 68
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
T GC+VL R ++ + + K+ K Y +
Sbjct: 69 TSGCLVLGRHRKATASLGLLFKHGKIGKTYWTVVEG 104
>gi|318043192|ref|NP_001187897.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
gi|308324268|gb|ADO29269.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
Length = 386
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 203 VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGT---SVGGTTDNIEESCATFASRALGL 259
VHP F + + I+ ++ + ++KP G S GG ++I ES A + +
Sbjct: 106 VHPNVFAKA----LSKSILYQDQNLIAINKPYGVPVYSTGGIGNSIAESLPVLA-KIIDC 160
Query: 260 T---TPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP 311
T + L + ++ T G + LART+E H IR + +K Y+ +T P+P
Sbjct: 161 TKGGSKLHVCYNLEKDTTGVLFLARTEETAERIHNLIRSHQAEKRYMVITVGVPVP 216
>gi|294852409|ref|ZP_06793082.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
gi|294820998|gb|EFG37997.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
Length = 331
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 229 VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
V +KPAG +V G T +I+ + S+ R H+ID T G +V+ART+
Sbjct: 109 VFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK---GEKPRLVHRIDRDTSGVLVVARTRGA 165
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 166 AQALTASFRERDTKKTYWALVKG 188
>gi|295676473|ref|YP_003604997.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1002]
gi|295436316|gb|ADG15486.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1002]
Length = 416
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQIDNCTE 274
I+ ++ VV++KPAG V N + + A GL H++D T
Sbjct: 147 IVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLHRYGETAAGLPR-AGIVHRLDKETS 205
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +V+ART E + R+++ + VK+ YLAL +P
Sbjct: 206 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMP 242
>gi|336311182|ref|ZP_08566149.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
gi|335865398|gb|EGM70424.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
Length = 320
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 97 DRILHEDNHLIVLNKPAGIAVHGGSGV--DYGVIEALRSLRPQQKFLELVHRLDKDTSGV 154
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 155 LLVAKKRSALKHMHDQLRYKKMQKDYLALVKG 186
>gi|297626700|ref|YP_003688463.1| pseudouridylate synthase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922465|emb|CBL57038.1| Pseudouridylate synthase, Uncharacterized RNA pseudouridine
synthase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 306
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 219 RIIAVTESHVVLDKPAGT----SVGGTTDNIEESCATFASR--ALGLTTPLRTTHQIDNC 272
RI+ VV+DKPAG SVG ++ A R G H++D
Sbjct: 81 RIVHDDADIVVVDKPAGVAAHPSVGWDGPDVVSGLAGAGFRISTSGAAERQGIVHRLDVG 140
Query: 273 TEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
T G +V+A+++ ++ R R++ V K YL L L
Sbjct: 141 TSGLMVVAKSERAYTLLKRAFRDRTVDKYYLTLVQGHL 178
>gi|294141325|ref|YP_003557303.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
gi|293327794|dbj|BAJ02525.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
Length = 319
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEG 275
RI+ +S +VL+KP+G +V G + + A R+L T L H++D T G
Sbjct: 95 EDRIVFEDKSIIVLNKPSGIAVHGGSGV--DFGVIEAMRSLRPTQKFLELVHRLDKDTSG 152
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K Y AL
Sbjct: 153 VLLIAKKRSALRHLHDQLRFKKMQKDYQALVKG 185
>gi|149203330|ref|ZP_01880300.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149143163|gb|EDM31202.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 347
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 225 ESHVV-LDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQ 283
+ H++ L+KP G V G + + + G R H++D T G ++LART+
Sbjct: 97 DDHIIALNKPPGLPVQGGSKQLRHVDGLAEALRFGAEDKPRLVHRLDKDTSGVLLLARTR 156
Query: 284 EYCSIFHRKIREKKVKKLYLA 304
E R + +K+Y A
Sbjct: 157 EAAKGLTAAFRHRNTRKIYWA 177
>gi|385788027|ref|YP_005819136.1| 23S rRNA pseudouridylate synthase C [Erwinia sp. Ejp617]
gi|310767299|gb|ADP12249.1| 23S rRNA pseudouridylate synthase C [Erwinia sp. Ejp617]
Length = 320
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDNCTE 274
II + +V++KP+GT+V G S +F L P L H++D T
Sbjct: 95 IIYEDDYLLVMNKPSGTAVHGG------SGLSFGVIEGLRALRPDARFLELVHRLDRDTS 148
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +++A+ + H ++REK ++K YLAL P
Sbjct: 149 GILLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWP 185
>gi|357406442|ref|YP_004918366.1| rRNA pseudouridylate synthase C [Methylomicrobium alcaliphilum 20Z]
gi|351719107|emb|CCE24781.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Methylomicrobium alcaliphilum 20Z]
Length = 318
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGCVVLARTQEYC 286
+VL+KP+G +V G + +S R L P L H++D T GC+++A+ +
Sbjct: 106 LVLNKPSGFAVHGGSG--LDSAVIEGLRQLRPAAPFLELVHRLDRDTSGCLLIAKKRSAL 163
Query: 287 SIFHRKIREKKVKKLYLA-----------LTTAPLPVGIMTHYMRPINIAPRLVSEGKTI 335
H R ++K YLA + TAPL + R + ++ R E +T
Sbjct: 164 RKLHELFRGDDIQKTYLAVLAGRWARKKLVVTAPLQKNVNKGGERMVEVS-RSGKEAETF 222
Query: 336 F 336
F
Sbjct: 223 F 223
>gi|338975000|ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
gi|338231599|gb|EGP06734.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
Length = 424
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 220 IIAVTESHVVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ E +VL+KPAG +V G T ++++ R P R H++D T GC
Sbjct: 187 ILFEDEDLMVLNKPAGLAVQGGSGMTKHVDQMLEVM--RDAKGQKP-RLVHRLDRETSGC 243
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLP-VGIMTHYM 319
+++A+T+ S R + +K+Y AL P P G ++ Y+
Sbjct: 244 LLIAKTRFAASALTGSFRHRSARKIYWALVAGVPKPKQGRISTYL 288
>gi|254561887|ref|YP_003068982.1| hypothetical protein METDI3488 [Methylobacterium extorquens DM4]
gi|254269165|emb|CAX25131.1| hypothetical protein METDI3488 [Methylobacterium extorquens DM4]
Length = 135
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 228 VVLDKPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+V+DKPAG V GG T F GL H++D T GC+VL R
Sbjct: 22 LVIDKPAGLPVHPGPKGGPTLTDHLDALRF-----GLPRRPEAAHRLDRDTSGCLVLGRH 76
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAP 309
+ + +R + KV K Y AL +P
Sbjct: 77 AKALARLNRLFADGKVDKTYWALWRSP 103
>gi|414562070|ref|YP_007001370.1| 23S rRNA pseudouridine955/2504/2580 synthase RluC [Shewanella
oneidensis MR-1]
gi|410519821|gb|AFV73559.1| 23S rRNA pseudouridine955/2504/2580 synthase RluC [Shewanella
oneidensis MR-1]
Length = 319
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 96 DRILHEDNHLIVLNKPAGIAVHGGSG--VDYGVIEALRSLRPQQKFLELVHRLDKDTSGV 153
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
+++A+ + H ++R KK++K YLAL
Sbjct: 154 LLVAKKRSALKHMHDQLRYKKMQKDYLALVKG 185
>gi|407771062|ref|ZP_11118425.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285951|gb|EKF11444.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 365
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
+I E + ++KPAG +V G T+ + L + H++D T G ++L
Sbjct: 113 VIFYDEVVLAINKPAGLAVQGGTNTDLHVDGMLDALKLDSKERPKLVHRLDKDTSGVLLL 172
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLALTTA 308
AR+ + + ++K +KLY A+ T
Sbjct: 173 ARSASAANALTKAFKDKTTRKLYWAIVTG 201
>gi|192291994|ref|YP_001992599.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192285743|gb|ACF02124.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 455
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V GTT +I++ R P R H+ID T GC+++A+T+
Sbjct: 226 LVLNKPAGLAVQGGSGTTRHIDQMLEVL--RDAKGQKP-RLVHRIDKETAGCLLVAKTRF 282
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
+ R + +K+Y AL
Sbjct: 283 AATALTGSFRHRSARKIYWALVAG 306
>gi|295688947|ref|YP_003592640.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430850|gb|ADG10022.1| pseudouridine synthase, RluA family [Caulobacter segnis ATCC 21756]
Length = 332
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S ++ E + L+KPAG +V G T + ++ G+ P R H++D T G
Sbjct: 91 KSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRP-RLVHRLDRDTSGV 149
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPR 327
++L +T + ++K +K Y A+ P P G+M ++ + R
Sbjct: 150 LLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKRGVGDR 202
>gi|422023014|ref|ZP_16369520.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
gi|414094744|gb|EKT56408.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
Length = 318
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
I+ ES +V++KP+GT+V G + + E A L H++D T G
Sbjct: 94 ILYEDESILVINKPSGTAVHGGSGLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGI 149
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALT-----------TAPLPVGIMTHYMRPINIA 325
+++A+ + H ++R K+++K Y+AL APL I+ R + +
Sbjct: 150 LLVAKKRSALRALHEQLRLKQMQKDYMALVRGNWQSHTKVIQAPLLKNILQSGERIVRVN 209
Query: 326 PRLVSEGK 333
P EGK
Sbjct: 210 P----EGK 213
>gi|414174042|ref|ZP_11428669.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410890676|gb|EKS38475.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 408
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCS 287
+VL+KPAG +V G + + + R H++D T GC+++A+T+ S
Sbjct: 179 MVLNKPAGLAVQGGSGMTKHVDQMLEAMRDAKGQKPRLVHRLDRETSGCLLIAKTRFAAS 238
Query: 288 IFHRKIREKKVKKLYLALTTA 308
R + +K+Y AL
Sbjct: 239 ALTGSFRHRSARKIYWALVAG 259
>gi|409437486|ref|ZP_11264600.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
gi|408750914|emb|CCM75758.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
Length = 330
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 228 VVLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
+VL+KPAG +V G T +I++ + S A G R H++D T G +V+ART+
Sbjct: 103 IVLNKPAGLAVQGGSGVTRHIDKMLEAWTS-AKGEKP--RLVHRLDRDTSGVLVVARTRG 159
Query: 285 YCSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y +L
Sbjct: 160 AAQKLTAAFRERDTKKTYWSLVKG 183
>gi|397670593|ref|YP_006512128.1| RluA family pseudouridine synthase [Propionibacterium propionicum
F0230a]
gi|395141906|gb|AFN46013.1| pseudouridine synthase, RluA family [Propionibacterium propionicum
F0230a]
Length = 306
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 172 IKGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPK-----RFPRCYDIDWNSRIIAVTES 226
+ G+TV+ A + IV AG L + P+ PR II
Sbjct: 41 LDGETVKRASR---------IVTAGAMLELVTEPRPTQVASRPRLVG---GLEIIHEDRD 88
Query: 227 HVVLDKPAGT----SVGGTTDNIEE--SCATFASRALGLTTPLRTTHQIDNCTEGCVVLA 280
VV+DKPAG S+G ++ E + A A G ++D T G +VLA
Sbjct: 89 IVVVDKPAGVAAHPSLGWEGPSVTEHLAAAGIAIATSGAPERQGVVSRLDVGTSGLMVLA 148
Query: 281 RTQEYCSIFHRKIREKKVKKLYLAL 305
R++ S+ + R+K V K Y AL
Sbjct: 149 RSERAYSVLKQAFRDKAVDKTYQAL 173
>gi|332141130|ref|YP_004426868.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Deep ecotype']
gi|410861442|ref|YP_006976676.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii AltDE1]
gi|327551152|gb|AEA97870.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Deep ecotype']
gi|410818704|gb|AFV85321.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii AltDE1]
Length = 313
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 29/109 (26%)
Query: 221 IAVTESHV--------VLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRT------- 265
IA ESH+ V++KP+G +V G + + GL LR
Sbjct: 88 IAALESHILFEDDRILVMNKPSGMAVHGGS-----------GLSFGLIEGLRALRPDAKF 136
Query: 266 ---THQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
H++D T GC+++A+ + H ++R K+ K Y AL P
Sbjct: 137 MELVHRLDRDTSGCILIAKKRSALRHMHEQLRTGKMDKRYNALVAGEWP 185
>gi|222086089|ref|YP_002544621.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221723537|gb|ACM26693.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 332
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTT 261
K D D +R++ + V VL+KPAG +V G T ++++ + S+
Sbjct: 82 KDMKHSSDADLLARMLLHEDEKVFVLNKPAGLAVQGGSGLTRHLDKMLEAWTSKK---GE 138
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R H++D T G +V+ART+ RE+ KK Y +L
Sbjct: 139 KPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWSLVKG 185
>gi|115372352|ref|ZP_01459661.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310819495|ref|YP_003951853.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115370565|gb|EAU69491.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309392567|gb|ADO70026.1| Pseudouridine synthase, RluA family [Stigmatella aurantiaca
DW4/3-1]
Length = 324
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 225 ESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQE 284
E+ + +DKP G + T S S LG L H++D T G V +T +
Sbjct: 89 EALIAVDKPVGITAQPTEGRAGGSLVDLVSERLGQLAGL--VHRLDRETSGVTVFGKTPQ 146
Query: 285 YCSIFHRKIREKKVKKLYLALTTAPLPV 312
+ + RE + +K Y+A T LP
Sbjct: 147 ATTALAAEFREGRARKRYVAATGPGLPA 174
>gi|442318156|ref|YP_007358177.1| RNA pseudouridine synthase family protein [Myxococcus stipitatus
DSM 14675]
gi|441485798|gb|AGC42493.1| RNA pseudouridine synthase family protein [Myxococcus stipitatus
DSM 14675]
Length = 345
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVL 279
++A + +VLDKPAG + T + + + G H++D T G VV
Sbjct: 107 VVAQDDWLLVLDKPAGLPIHPTARYHKGTLVSILRERFGERF-AEPAHRLDRETSGLVVC 165
Query: 280 ARTQEYCSIFHRKIREKKVKKLYLAL 305
RT E C + R + V K YLA+
Sbjct: 166 GRTTEACRVLGRLFVSRDVHKEYLAI 191
>gi|16126223|ref|NP_420787.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|221234996|ref|YP_002517432.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|220964168|gb|ACL95524.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 331
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
S ++ E + L+KPAG +V G T + ++ G+ P R H++D T G
Sbjct: 90 KSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSAWGEGVDRP-RLVHRLDRDTSGV 148
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLALTTA-PLPV-GIMTHYMRPINIAPR 327
++L +T + ++K +K Y A+ P P G+M ++ + R
Sbjct: 149 LLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGNPHPTEGVMELHLAKRGVGDR 201
>gi|124024488|ref|YP_001018795.1| pseudouridylate synthase [Prochlorococcus marinus str. MIT 9303]
gi|123964774|gb|ABM79530.1| putative pseudouridylate synthase specific to ribosomal large
subunit [Prochlorococcus marinus str. MIT 9303]
Length = 324
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 228 VVLDKPAGTSV----GGTTDNIEESCATFASRALGLTTPLR--TTHQIDNCTEGCVVLAR 281
+V++KPAG +V G + S G++ LR H++D T GC+V+A+
Sbjct: 104 IVINKPAGLTVHPAPGNRNGTLVNGLLHHCSDLPGISGKLRPGIVHRLDKDTTGCIVIAK 163
Query: 282 TQEYCSIFHRKIREKKVKKLYLAL 305
+QE ++I+++ + YLA+
Sbjct: 164 SQEALVKLQQQIQKRIASRNYLAV 187
>gi|127512523|ref|YP_001093720.1| RluA family pseudouridine synthase [Shewanella loihica PV-4]
gi|126637818|gb|ABO23461.1| ribosomal large subunit pseudouridine synthase C [Shewanella
loihica PV-4]
Length = 329
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP-LRTTHQIDNCTEGC 276
RI+ ++ +VL+KPAG +V G + + A R+L L H++D T G
Sbjct: 106 GRILFEDKAIIVLNKPAGIAVHGGSG--VDFGVIEAMRSLRPQQKFLELVHRLDKETSGV 163
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+++A+ + H ++R KK++K Y+AL
Sbjct: 164 LLIAKKRRALKHLHDQLRYKKMQKDYMAL 192
>gi|384211367|ref|YP_005600449.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384408473|ref|YP_005597094.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|384445066|ref|YP_005603785.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|326409020|gb|ADZ66085.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|326538730|gb|ADZ86945.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
gi|349743057|gb|AEQ08600.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 331
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 229 VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
V +KPAG +V G T +I+ + S+ R H+ID T G +V+ART+
Sbjct: 109 VFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK---GEKPRLVHRIDRDTSGVLVVARTRGA 165
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 166 AQALTASFRERDTKKTYWALVKG 188
>gi|350572343|ref|ZP_08940644.1| ribosomal large subunit pseudouridine synthase C [Neisseria
wadsworthii 9715]
gi|349790270|gb|EGZ44187.1| ribosomal large subunit pseudouridine synthase C [Neisseria
wadsworthii 9715]
Length = 328
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 193 VEAGTYLRV--------HVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDN 244
+E G LR+ V P + + D ++ ++ +V++KP+G +V G +
Sbjct: 61 IETGDILRIPPVRTAEKQVRPAQTVPAREFD----MVYEDDAMLVINKPSGVAVHGGS-G 115
Query: 245 IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLA 304
+ RA L H++D T G +++A+ + H IR KK+YLA
Sbjct: 116 VSFGVIEQIRRARPEARYLELAHRLDKDTSGLLMIAKKRSALVKLHEAIRNDHPKKVYLA 175
Query: 305 LTTAPLP 311
L LP
Sbjct: 176 LGVGRLP 182
>gi|270157796|ref|ZP_06186453.1| RluA family pseudouridine synthase [Legionella longbeachae D-4968]
gi|289163935|ref|YP_003454073.1| ribosomal large subunit pseudouridine synthase [Legionella
longbeachae NSW150]
gi|269989821|gb|EEZ96075.1| RluA family pseudouridine synthase [Legionella longbeachae D-4968]
gi|288857108|emb|CBJ10923.1| Ribosomal large subunit pseudouridine synthase [Legionella
longbeachae NSW150]
Length = 318
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTT----------HQI 269
II S +V++KPAG +V G + +LG+ LR T H++
Sbjct: 89 IIFEDSSLLVINKPAGIAVHGGS-----------GLSLGVIEALRKTRSDLAYLELIHRL 137
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTT 307
D T GC++LA+ + H + ++V+K Y AL T
Sbjct: 138 DKETSGCLLLAKKRSVLRAIHALLEAREVQKTYWALLT 175
>gi|261325093|ref|ZP_05964290.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261301073|gb|EEY04570.1| pseudouridine synthase [Brucella neotomae 5K33]
Length = 326
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 229 VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
V +KPAG +V G T +I+ + S+ R H+ID T G +V+ART+
Sbjct: 104 VFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK---GEKPRLVHRIDRDTSGVLVVARTRGA 160
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 161 AQALTASFRERDTKKTYWALVKG 183
>gi|228920104|ref|ZP_04083453.1| Pseudouridine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423579586|ref|ZP_17555697.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|423637957|ref|ZP_17613610.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
gi|228839560|gb|EEM84852.1| Pseudouridine synthase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401218048|gb|EJR24733.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|401272759|gb|EJR78750.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
Length = 307
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 173 KGKTVREAQKTFRITHVDQIVEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHV-VLD 231
KG TV Q+ + +++++ L+VH+ + D ++ + + HV +++
Sbjct: 45 KGVTVNGEQRRW-----NELLKENDKLQVHMFAEE-EYGVDPEYGELHVVYEDDHVLIVN 98
Query: 232 KPAGTSV-----GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
KP GGT + F + GL T +R H++D T G VV A+ +
Sbjct: 99 KPEQMDTHPAEKGGT--GTLANLVAFHFQMQGLETRVRHIHRLDKDTTGGVVFAKHRIAG 156
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
+I R + E+K+K+ Y AL +
Sbjct: 157 AIMDRLLMERKIKRTYAALVEGKV 180
>gi|421471762|ref|ZP_15920019.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
BAA-247]
gi|421475428|ref|ZP_15923380.1| pseudouridine synthase, RluA family [Burkholderia multivorans CF2]
gi|400224699|gb|EJO54915.1| pseudouridine synthase, RluA family [Burkholderia multivorans ATCC
BAA-247]
gi|400230208|gb|EJO60012.1| pseudouridine synthase, RluA family [Burkholderia multivorans CF2]
Length = 391
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 225 ESHVVLDKPAGTSVGGTTD---NIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLAR 281
++ +V+DKPAG +V G + + E RA L H++D T G ++LA+
Sbjct: 164 DAMLVIDKPAGVAVHGGSGVAFGVIEQLRQARPRA----KFLELVHRLDRETSGVLMLAK 219
Query: 282 TQEYCSIFHRKIREKKVKKLYLA 304
+ H +IRE ++ K Y A
Sbjct: 220 KRTALVALHEQIRENRIDKRYFA 242
>gi|398380034|ref|ZP_10538152.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397721350|gb|EJK81898.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 317
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 206 KRFPRCYDIDWNSRIIAVTESHV-VLDKPAGTSV---GGTTDNIEESCATFASRALGLTT 261
K D D +R++ + V VL+KPAG +V G T ++++ + S+
Sbjct: 67 KDMKHSSDADLLARMLLHEDEKVFVLNKPAGLAVQGGSGLTRHLDKMLEAWTSKK---GE 123
Query: 262 PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTA 308
R H++D T G +V+ART+ RE+ KK Y +L
Sbjct: 124 KPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWSLVKG 170
>gi|322515396|ref|ZP_08068389.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
ureae ATCC 25976]
gi|322118578|gb|EFX90808.1| ribosomal large subunit pseudouridine synthase C [Actinobacillus
ureae ATCC 25976]
Length = 356
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 215 DWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQI 269
+ +I+ + +V++KP+G +V G S +F AL P L H+I
Sbjct: 128 ELEQQILYEDDVMLVINKPSGIAVHGG------SGLSFGVIEALRALRPQARFLELVHRI 181
Query: 270 DNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
D T G +++A+ + H ++REK V+K YLAL
Sbjct: 182 DRDTSGILLVAKKRSALRNLHEQLREKVVQKDYLAL 217
>gi|323526134|ref|YP_004228287.1| RluA family pseudouridine synthase [Burkholderia sp. CCGE1001]
gi|323383136|gb|ADX55227.1| pseudouridine synthase, RluA family [Burkholderia sp. CCGE1001]
Length = 426
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 220 IIAVTESHVVLDKPAGTSVGGTTDNIEESCAT-----FASRALGLTTPLRTTHQIDNCTE 274
I+ ++ VV++KPAG V N + + A GL H++D T
Sbjct: 145 IVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLLYRYGDAAAGLPR-AGIVHRLDKETS 203
Query: 275 GCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLP 311
G +V+ART E + R+++ + VK+ YLAL +P
Sbjct: 204 GLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNMP 240
>gi|442611421|ref|ZP_21026127.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747349|emb|CCQ12189.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 321
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 228 VVLDKPAGTSVGGTTDNIEESCATF----ASRALG-LTTPLRTTHQIDNCTEGCVVLART 282
+V++KP+G +V G S +F A RAL L H++D T GC+++A+
Sbjct: 106 MVINKPSGLAVHGG------SGLSFGLIEAIRALRPEERSLELVHRLDRDTSGCIIIAKK 159
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTA 308
+ H ++REK ++K Y AL
Sbjct: 160 RSILKGLHEQLREKTMEKNYWALVKG 185
>gi|406955940|gb|EKD84217.1| hypothetical protein ACD_39C00172G0002 [uncultured bacterium]
Length = 244
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGT-TDNIEESCATFASRALGLTTPLRTTHQIDNCTEG 275
N II + +S V ++KPAG V + DN E A R L L + H++D T G
Sbjct: 4 NDDIIFLDDSLVAINKPAGLLVHPSFLDNAETQSAMKQVRNL-LGKWVYPVHRLDKPTSG 62
Query: 276 CVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
+V A + E + E+ V K YLA+
Sbjct: 63 ILVFALSSEIARVLTDAFTERSVAKEYLAV 92
>gi|397646140|gb|EJK77140.1| hypothetical protein THAOC_01047 [Thalassiosira oceanica]
Length = 619
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 185 RITHVDQIVEAGTYLR--VHVHPKRFPRCYDIDWNS--RIIAVTESHVVLDKPAGTSV-- 238
R D IV+ G L VH H I+ + I+ +ES +V+DKP+ +
Sbjct: 112 RRVQCDYIVKGGDELMHTVHRHEPAVGLAEGIEGDPPIDILHESESLLVVDKPSTLPIHP 171
Query: 239 -GGTTDN-IEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREK 296
GG N + E +++ G L H++D T G VV+A++ +Y I ++
Sbjct: 172 CGGYNFNSLFEVLSSWRQDRFG-QGKLFNVHRLDRLTSGLVVVAKSSQYARTLSNCIMKR 230
Query: 297 K-VKKLYLALTTAPLPVGIMT 316
+K+YLA P+G++T
Sbjct: 231 DGCEKIYLARVKGKFPLGLIT 251
>gi|387889723|ref|YP_006320021.1| ribosomal large subunit pseudouridine synthase C [Escherichia
blattae DSM 4481]
gi|386924556|gb|AFJ47510.1| ribosomal large subunit pseudouridine synthase C [Escherichia
blattae DSM 4481]
Length = 351
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFAS-RALGLTTP----LRTTHQIDN 271
N I+ + +VL+KP+GT+V G S +F L P L H++D
Sbjct: 124 NDVILYEDDYLLVLNKPSGTAVHGG------SGLSFGVIEGLRALRPEARFLELVHRLDR 177
Query: 272 CTEGCVVLARTQEYCSIFHRKIREKKVKKLYLAL 305
T G +++A+ + H ++REK ++K YLAL
Sbjct: 178 DTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 211
>gi|381203927|ref|ZP_09911031.1| pseudouridylate synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 226
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 217 NSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGC 276
+ +++ + ++LDKPAG V D AS G H++D T GC
Sbjct: 5 SDKVLFIDGEAIILDKPAGLPVDAPRDGSISLENHLASLTFGFQRWPLAVHRLDRDTSGC 64
Query: 277 VVLARTQEYCSIFHRKIREKKVKKLYLAL 305
++LAR + F V+K Y+A+
Sbjct: 65 LLLARNPKAHKRFAAAFEAGTVEKRYVAV 93
>gi|376274261|ref|YP_005114700.1| RluA family pseudouridine synthase [Brucella canis HSK A52141]
gi|363402828|gb|AEW13123.1| pseudouridine synthase, RluA family protein [Brucella canis HSK
A52141]
Length = 331
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 229 VLDKPAGTSV---GGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEY 285
V +KPAG +V G T +I+ + S+ R H+ID T G +V+ART+
Sbjct: 109 VFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK---GEKPRLVHRIDRDTSGVLVVARTRGA 165
Query: 286 CSIFHRKIREKKVKKLYLALTTA 308
RE+ KK Y AL
Sbjct: 166 AQALTASFRERDTKKTYWALVKG 188
>gi|448081767|ref|XP_004194969.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
gi|359376391|emb|CCE86973.1| Piso0_005498 [Millerozyma farinosa CBS 7064]
Length = 602
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 219 RIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVV 278
+I+ E+ + +DKP+G V T + LG + +++D T G +
Sbjct: 189 KIVFEDENIIAIDKPSGIPVHPTGRFRYNTITNIFKHELGQV--VHPCNRLDRLTSGLMF 246
Query: 279 LARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINIAPR 327
L +T + F ++IR++ V K Y+A P+G +T I I+P+
Sbjct: 247 LGKTPKGADSFAQQIRDRTVSKEYVARVKGKFPLGEITVDEPLITISPK 295
>gi|390939837|ref|YP_006403574.1| RluA family pseudouridine synthase [Sulfurospirillum barnesii
SES-3]
gi|390192944|gb|AFL67999.1| pseudouridine synthase, RluA family [Sulfurospirillum barnesii
SES-3]
Length = 326
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 211 CYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATF-ASRALGLTT-----PLR 264
YD+ ++ I+ E ++++KP +V G E + + R + L+T
Sbjct: 68 AYDVTFDVPILYEDEDLLIINKPPFLTVHGAPSVKEATLVDWLKKRGISLSTISGEERHG 127
Query: 265 TTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPINI 324
H+ID T G +V+A+T E ++ +K + + YLAL PL ++ N+
Sbjct: 128 IVHRIDKETSGALVIAKTNEAHVALASQLEDKSMGRYYLALIDVPLKENVVVDLPIGRNL 187
Query: 325 APRL 328
RL
Sbjct: 188 NHRL 191
>gi|262374097|ref|ZP_06067374.1| 23S rRNA pseudouridylate synthase [Acinetobacter junii SH205]
gi|262311108|gb|EEY92195.1| 23S rRNA pseudouridylate synthase [Acinetobacter junii SH205]
Length = 310
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 218 SRIIAVTESHVVLDKPAGTSVGGTTDN----IEESCATFASRALGLTTPLRTTHQIDNCT 273
SR++ E +V++KP+G +V G + IE A + L L H+ID T
Sbjct: 95 SRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATGKKYLELI------HRIDRDT 148
Query: 274 EGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPL 310
G V++++ + + +RE K+KK Y A+ +
Sbjct: 149 SGLVMISKKRSTLKLLQDLLREHKIKKTYAAIVKGQV 185
>gi|240948986|ref|ZP_04753340.1| ribosomal large subunit pseudouridine synthase A [Actinobacillus
minor NM305]
gi|240296573|gb|EER47191.1| ribosomal large subunit pseudouridine synthase A [Actinobacillus
minor NM305]
Length = 222
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 228 VVLDKPAGT-SVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYC 286
+V++KP+G SV G +S T + G T P H++D T G ++ A ++
Sbjct: 24 LVINKPSGLLSVPGNRPEYYDSAMTRVQQKYGFTEP---AHRLDMATSGILLFALSKVAE 80
Query: 287 SIFHRKIREKKVKKLYLALTTAPL 310
R+ RE++ KK Y+AL L
Sbjct: 81 KELKRQFREREPKKHYIALLWGKL 104
>gi|198461946|ref|XP_001352285.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
gi|198142379|gb|EAL42449.2| GA19422 [Drosophila pseudoobscura pseudoobscura]
Length = 321
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 223 VTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLART 282
+ E VV++KPA V + +++ L LRT H++D T G ++ RT
Sbjct: 1 MDEDIVVVNKPASIPVHPCGRYRHNTVVFILAKSHNLKN-LRTIHRLDRLTSGLLIFGRT 59
Query: 283 QEYCSIFHRKIREKKVKKLYLALTTAPLPVGIM 315
+ ++IR ++V+K Y+ P GI+
Sbjct: 60 SKKARELEQQIRNRQVQKEYVCRVEGRFPDGII 92
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,637,708,986
Number of Sequences: 23463169
Number of extensions: 234385019
Number of successful extensions: 521990
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 1565
Number of HSP's that attempted gapping in prelim test: 521048
Number of HSP's gapped (non-prelim): 1804
length of query: 354
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 211
effective length of database: 9,003,962,200
effective search space: 1899836024200
effective search space used: 1899836024200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)